Query 030958
Match_columns 168
No_of_seqs 158 out of 1126
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:07:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030958.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030958hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 4.7E-56 1E-60 327.0 18.2 152 1-165 1-152 (153)
2 KOG0425 Ubiquitin-protein liga 100.0 6.1E-55 1.3E-59 315.3 18.0 167 1-167 1-167 (171)
3 KOG0417 Ubiquitin-protein liga 100.0 1E-54 2.3E-59 313.6 15.4 146 6-165 2-147 (148)
4 KOG0419 Ubiquitin-protein liga 100.0 3.2E-53 7E-58 298.3 15.3 151 2-166 1-151 (152)
5 PTZ00390 ubiquitin-conjugating 100.0 3E-50 6.5E-55 298.7 19.1 146 6-165 3-148 (152)
6 KOG0426 Ubiquitin-protein liga 100.0 2.1E-50 4.7E-55 284.2 15.9 162 3-164 2-163 (165)
7 PLN00172 ubiquitin conjugating 100.0 1.1E-49 2.5E-54 294.3 18.7 144 7-164 3-146 (147)
8 KOG0424 Ubiquitin-protein liga 100.0 7.3E-46 1.6E-50 264.6 15.9 153 2-165 1-157 (158)
9 PF00179 UQ_con: Ubiquitin-con 100.0 3.3E-45 7.2E-50 268.5 14.8 140 9-160 1-140 (140)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 6.6E-44 1.4E-48 261.9 16.7 140 8-160 2-141 (141)
11 smart00212 UBCc Ubiquitin-conj 100.0 4.1E-43 8.9E-48 258.8 18.0 144 8-163 1-144 (145)
12 KOG0418 Ubiquitin-protein liga 100.0 4.3E-43 9.2E-48 260.8 14.8 145 6-164 4-152 (200)
13 KOG0421 Ubiquitin-protein liga 100.0 8.7E-43 1.9E-47 248.9 12.5 145 3-162 27-171 (175)
14 KOG0422 Ubiquitin-protein liga 100.0 3.8E-41 8.3E-46 239.3 14.3 147 6-165 3-149 (153)
15 KOG0420 Ubiquitin-protein liga 100.0 8.4E-38 1.8E-42 229.4 12.8 143 3-161 26-171 (184)
16 KOG0416 Ubiquitin-protein liga 100.0 1.5E-37 3.2E-42 227.7 11.6 143 6-165 4-148 (189)
17 KOG0423 Ubiquitin-protein liga 100.0 3.1E-35 6.7E-40 216.1 8.5 143 5-161 10-152 (223)
18 KOG0894 Ubiquitin-protein liga 100.0 2E-32 4.3E-37 207.6 15.2 119 1-132 1-119 (244)
19 KOG0427 Ubiquitin conjugating 100.0 1.9E-31 4.1E-36 188.0 12.0 114 3-131 13-127 (161)
20 KOG0429 Ubiquitin-conjugating 99.9 7.4E-27 1.6E-31 177.9 14.4 145 8-167 22-172 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 6.2E-25 1.3E-29 169.9 10.5 113 4-130 10-122 (314)
22 KOG0895 Ubiquitin-conjugating 99.8 6.1E-19 1.3E-23 158.8 8.3 119 5-130 851-971 (1101)
23 KOG0895 Ubiquitin-conjugating 99.7 1.7E-16 3.6E-21 143.3 11.4 121 4-131 281-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.5 1E-13 2.2E-18 98.7 7.5 119 1-130 1-123 (138)
25 KOG0897 Predicted ubiquitin-co 98.9 5E-09 1.1E-13 72.8 6.5 78 55-145 13-93 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.6 1.5E-07 3.3E-12 68.3 7.2 67 51-130 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.4 7E-07 1.5E-11 63.9 6.7 78 35-130 32-117 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.0 1.8E-06 4E-11 62.4 1.2 84 5-94 24-117 (161)
29 KOG2391 Vacuolar sorting prote 97.8 0.0002 4.3E-09 58.9 9.7 80 34-131 51-138 (365)
30 KOG3357 Uncharacterized conser 97.4 0.00018 3.9E-09 51.5 3.1 82 5-93 27-119 (167)
31 PF14462 Prok-E2_E: Prokaryoti 97.2 0.0059 1.3E-07 43.6 9.3 103 23-129 12-120 (122)
32 PF05773 RWD: RWD domain; Int 96.5 0.014 3E-07 40.1 6.8 69 8-78 4-74 (113)
33 smart00591 RWD domain in RING 96.1 0.094 2E-06 35.6 9.3 27 51-77 39-65 (107)
34 PF14457 Prok-E2_A: Prokaryoti 95.8 0.014 2.9E-07 43.9 3.9 62 57-130 57-126 (162)
35 PF09765 WD-3: WD-repeat regio 90.0 0.78 1.7E-05 37.6 5.4 86 7-129 101-187 (291)
36 KOG0309 Conserved WD40 repeat- 86.5 3.6 7.8E-05 38.0 7.6 69 6-77 421-491 (1081)
37 PF06113 BRE: Brain and reprod 80.7 8.3 0.00018 32.3 7.0 42 35-82 53-95 (333)
38 KOG4018 Uncharacterized conser 80.0 7.2 0.00016 30.5 6.1 61 9-73 6-69 (215)
39 PF14460 Prok-E2_D: Prokaryoti 76.7 3.5 7.6E-05 31.1 3.5 20 75-94 89-111 (175)
40 PF14455 Metal_CEHH: Predicted 57.9 77 0.0017 23.7 12.0 116 7-130 7-174 (177)
41 TIGR03737 PRTRC_B PRTRC system 57.8 17 0.00038 28.8 4.0 18 76-93 131-151 (228)
42 PF12018 DUF3508: Domain of un 56.1 17 0.00037 29.6 3.8 31 137-167 239-269 (281)
43 smart00340 HALZ homeobox assoc 52.1 13 0.00027 21.5 1.7 15 6-20 20-34 (44)
44 cd00421 intradiol_dioxygenase 51.3 25 0.00055 25.6 3.8 26 51-76 64-90 (146)
45 cd03457 intradiol_dioxygenase_ 48.1 29 0.00063 26.6 3.8 26 51-76 85-110 (188)
46 PF06113 BRE: Brain and reprod 46.2 32 0.00069 28.8 3.9 26 51-76 304-329 (333)
47 cd03459 3,4-PCD Protocatechuat 38.6 52 0.0011 24.4 3.8 25 52-76 72-101 (158)
48 PF03366 YEATS: YEATS family; 36.0 1.3E+02 0.0028 19.8 5.3 42 36-79 2-43 (84)
49 KOG4445 Uncharacterized conser 35.1 49 0.0011 27.5 3.3 25 53-77 45-69 (368)
50 PF00845 Gemini_BL1: Geminivir 33.6 1.1E+02 0.0025 24.6 5.1 47 34-80 101-155 (276)
51 cd01145 TroA_c Periplasmic bin 29.9 62 0.0013 24.6 3.1 51 111-167 111-161 (203)
52 cd01019 ZnuA Zinc binding prot 29.9 81 0.0017 25.5 3.9 52 110-167 123-174 (286)
53 KOG3285 Spindle assembly check 28.7 1.1E+02 0.0024 23.4 4.1 55 6-72 120-174 (203)
54 COG0544 Tig FKBP-type peptidyl 28.4 1.5E+02 0.0032 25.9 5.4 17 52-68 208-224 (441)
55 TIGR02423 protocat_alph protoc 27.7 91 0.002 24.0 3.6 26 51-76 95-125 (193)
56 cd05845 Ig2_L1-CAM_like Second 27.5 1.6E+02 0.0036 19.7 4.5 26 50-77 16-41 (95)
57 KOG0662 Cyclin-dependent kinas 27.3 66 0.0014 25.2 2.7 54 67-133 167-224 (292)
58 PF04881 Adeno_GP19K: Adenovir 25.5 68 0.0015 23.2 2.3 31 31-61 43-74 (139)
59 PF11333 DUF3135: Protein of u 24.8 2E+02 0.0044 18.9 4.4 26 139-164 7-32 (83)
60 PF01175 Urocanase: Urocanase; 24.0 1.4E+02 0.003 26.7 4.4 27 139-165 272-298 (546)
61 PF00779 BTK: BTK motif; Inte 23.9 27 0.00059 18.8 0.1 15 78-92 2-17 (32)
62 cd03463 3,4-PCD_alpha Protocat 23.6 1.2E+02 0.0027 23.1 3.6 24 52-75 92-120 (185)
63 cd01020 TroA_b Metal binding p 22.8 1.2E+02 0.0027 24.0 3.7 52 110-167 97-148 (264)
64 KOG0177 20S proteasome, regula 22.5 43 0.00094 25.8 0.9 29 86-127 135-163 (200)
65 COG2987 HutU Urocanate hydrata 22.5 2.4E+02 0.0052 25.0 5.5 26 139-164 282-307 (561)
66 cd01018 ZntC Metal binding pro 20.7 1.2E+02 0.0026 24.1 3.2 53 109-167 113-165 (266)
67 PF12065 DUF3545: Protein of u 20.7 70 0.0015 19.8 1.4 12 7-18 36-47 (59)
68 KOG3696 Aspartyl beta-hydroxyl 20.2 2.3E+02 0.0049 23.8 4.7 38 51-88 286-328 (334)
69 COG4957 Predicted transcriptio 20.2 52 0.0011 24.0 0.9 17 55-71 104-120 (148)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-56 Score=327.03 Aligned_cols=152 Identities=51% Similarity=0.937 Sum_probs=147.3
Q ss_pred CcchHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEeccccc
Q 030958 1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80 (168)
Q Consensus 1 m~s~~~~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 80 (168)
|++..|.+||++|+++|++++++++++.+++++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.++|||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 77777999999999999999999999999866699999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Q 030958 81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSSPNDESPANIDAAKEWRERKDEFKKKVSRCV 160 (168)
Q Consensus 81 Pnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~ 160 (168)
|||+.+|+|||+||+ +.|+|+++|.+||++|+++|.+||.++|+|.|||++|++|+++|.++||+++
T Consensus 81 PNV~~~G~vCLdIL~-------------~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~ 147 (153)
T COG5078 81 PNVDPSGNVCLDILK-------------DRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWV 147 (153)
T ss_pred CCcCCCCCChhHHHh-------------CCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHH
Confidence 999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 030958 161 RKSLE 165 (168)
Q Consensus 161 ~~~~~ 165 (168)
+++..
T Consensus 148 ~~~~~ 152 (153)
T COG5078 148 KKYAE 152 (153)
T ss_pred HHhcc
Confidence 99864
No 2
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-55 Score=315.34 Aligned_cols=167 Identities=75% Similarity=1.304 Sum_probs=164.2
Q ss_pred CcchHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEeccccc
Q 030958 1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80 (168)
Q Consensus 1 m~s~~~~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 80 (168)
|+++.+..-|+++|++|++++..|+.+..++++|+++|.|.|+||++|+|+||.|+-.+.||.+||.+||+++|.|++||
T Consensus 1 m~~~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwH 80 (171)
T KOG0425|consen 1 MTSSQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWH 80 (171)
T ss_pred CccchhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcC
Confidence 78888999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Q 030958 81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSSPNDESPANIDAAKEWRERKDEFKKKVSRCV 160 (168)
Q Consensus 81 Pnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~ 160 (168)
|||+.+|++|++||+++++++.+|....+.|.|.+|+++||++|.+||.+||.++|+|.|||+.|++|+++|+++++++|
T Consensus 81 PNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~v 160 (171)
T KOG0425|consen 81 PNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCV 160 (171)
T ss_pred CCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhc
Q 030958 161 RKSLEML 167 (168)
Q Consensus 161 ~~~~~~~ 167 (168)
+++++++
T Consensus 161 r~s~e~~ 167 (171)
T KOG0425|consen 161 RRSQEEA 167 (171)
T ss_pred HHHHHhh
Confidence 9999876
No 3
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-54 Score=313.59 Aligned_cols=146 Identities=38% Similarity=0.819 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEecccccccccC
Q 030958 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP 85 (168)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 85 (168)
+.+||.+|+++|++++++||.+.+. ++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+.
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~-~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPV-GDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCC-CCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 3569999999999999999999975 889999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhh
Q 030958 86 DGKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLE 165 (168)
Q Consensus 86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~~~ 165 (168)
.|+|||+||+ ..|||+++|.+||++|+++|.+||+++|++.++|++|+.|+.+|+++||+|++|++.
T Consensus 81 ~G~IclDILk-------------~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 81 NGRICLDILK-------------DQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred cccchHHhhh-------------ccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 9999999998 779999999999999999999999999999999999999999999999999999864
No 4
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-53 Score=298.26 Aligned_cols=151 Identities=44% Similarity=0.818 Sum_probs=146.5
Q ss_pred cchHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEecccccc
Q 030958 2 AKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHP 81 (168)
Q Consensus 2 ~s~~~~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 81 (168)
|+++|.+||++|++.++++++.||++.|+ ++|+++|.++|+||.+|||+||+|++.|.|+++||.+||.|+|.+.+|||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~-~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHP 79 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPV-ENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHP 79 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCC-ccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCC
Confidence 56789999999999999999999999998 88999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Q 030958 82 NVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSSPNDESPANIDAAKEWRERKDEFKKKVSRCVR 161 (168)
Q Consensus 82 nv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~ 161 (168)
||+++|.+||+||. ..|+|.|++..||.+||++|.+|++++|+|.|||++|++|+.+|.+++++.+.
T Consensus 80 Nvya~G~iClDiLq-------------NrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~ve 146 (152)
T KOG0419|consen 80 NVYADGSICLDILQ-------------NRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVE 146 (152)
T ss_pred CcCCCCcchHHHHh-------------cCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHH
Confidence 99999999999996 78999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q 030958 162 KSLEM 166 (168)
Q Consensus 162 ~~~~~ 166 (168)
+|..-
T Consensus 147 qsw~~ 151 (152)
T KOG0419|consen 147 QSWSD 151 (152)
T ss_pred Hhhcc
Confidence 98753
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=3e-50 Score=298.74 Aligned_cols=146 Identities=28% Similarity=0.652 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEecccccccccC
Q 030958 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP 85 (168)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 85 (168)
+++||++|+++|++++++|+.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~-~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~ 81 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPD-PGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK 81 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEC-CCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC
Confidence 6899999999999999999999986 789999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhh
Q 030958 86 DGKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLE 165 (168)
Q Consensus 86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~~~ 165 (168)
+|.||+++|+ ++|+|++||.+||++|+++|.+|++++|+|.+||++|++|+++|.++||+|++++..
T Consensus 82 ~G~iCl~iL~-------------~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 82 LGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred CCeEECccCc-------------ccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 9999999996 789999999999999999999999999999999999999999999999999998764
No 6
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-50 Score=284.22 Aligned_cols=162 Identities=57% Similarity=1.045 Sum_probs=158.6
Q ss_pred chHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEeccccccc
Q 030958 3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN 82 (168)
Q Consensus 3 s~~~~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 82 (168)
+..|+|||++||++|..++++||.+.|.+++|.++|.+.|.||++|+|+||+|.-++.||.|||.+||+++|...+||||
T Consensus 2 ~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPN 81 (165)
T KOG0426|consen 2 AGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPN 81 (165)
T ss_pred chhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCc
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHH
Q 030958 83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSSPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 162 (168)
Q Consensus 83 v~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~ 162 (168)
|+++|+||++||+-+++++.+|....+.|||..+++.||+++.+||.+||.++.+|.+|+.+|++|+++|.+.|+..++|
T Consensus 82 iy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrK 161 (165)
T KOG0426|consen 82 IYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRK 161 (165)
T ss_pred ccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hh
Q 030958 163 SL 164 (168)
Q Consensus 163 ~~ 164 (168)
..
T Consensus 162 tL 163 (165)
T KOG0426|consen 162 TL 163 (165)
T ss_pred hh
Confidence 75
No 7
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.1e-49 Score=294.31 Aligned_cols=144 Identities=37% Similarity=0.790 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEecccccccccCC
Q 030958 7 SLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPD 86 (168)
Q Consensus 7 ~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~ 86 (168)
.+||++|+++|++++++|+.+.+. ++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+.+
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~-~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~ 81 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPS-DENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN 81 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEC-CCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence 589999999999999999999986 7899999999999999999999999999999999999999999999999999999
Q ss_pred CceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 030958 87 GKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSL 164 (168)
Q Consensus 87 G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~~ 164 (168)
|.||+++|+ ++|+|++||++||.+|+++|.+|++++|+|.+||++|.+|+++|.++||+|++++.
T Consensus 82 G~iCl~il~-------------~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 82 GSICLDILR-------------DQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred CEEEcccCc-------------CCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 999999997 78999999999999999999999999999999999999999999999999998764
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-46 Score=264.60 Aligned_cols=153 Identities=35% Similarity=0.661 Sum_probs=143.9
Q ss_pred cchHHHHHHHHHHHHHhhCCCCCeEEEecCC----CCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEecc
Q 030958 2 AKSQASLLLQKQLKDLCKNPVDGFSAGLVDE----SNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE 77 (168)
Q Consensus 2 ~s~~~~~RL~~E~~~l~~~~~~g~~~~~~~~----~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 77 (168)
||+.++.||++|-+.+.++.+-|+++.|+.. .|+..|++.|.|+.||+||||.|.+++.||++||++||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 4567899999999999999999999999743 368999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHH
Q 030958 78 MWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSSPNDESPANIDAAKEWRERKDEFKKKVS 157 (168)
Q Consensus 78 i~HPnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~ 157 (168)
+|||||++.|.|||+||.. ..+|+|+.||.+||.+||.+|.+||..+|+|.||..+|.+|+.+|+++||
T Consensus 81 l~HPNVypsgtVcLsiL~e-----------~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr 149 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNE-----------EKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVR 149 (158)
T ss_pred CcCCCcCCCCcEehhhhcc-----------ccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHH
Confidence 9999999999999999973 24699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 030958 158 RCVRKSLE 165 (168)
Q Consensus 158 ~~~~~~~~ 165 (168)
.+++++..
T Consensus 150 ~qak~~a~ 157 (158)
T KOG0424|consen 150 AQAKEYAK 157 (158)
T ss_pred HHHHHhcc
Confidence 99998753
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=3.3e-45 Score=268.48 Aligned_cols=140 Identities=49% Similarity=0.932 Sum_probs=128.9
Q ss_pred HHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEecccccccccCCCc
Q 030958 9 LLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGK 88 (168)
Q Consensus 9 RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~ 88 (168)
||++|+++++++++.|+.+.+.+++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++|||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999974459999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Q 030958 89 VCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSSPNDESPANIDAAKEWRERKDEFKKKVSRCV 160 (168)
Q Consensus 89 iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~ 160 (168)
||+++|+. +.|+|+++|.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++||+|.
T Consensus 81 icl~~l~~------------~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNP------------ESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTT------------TTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhc------------ccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 99999972 5699999999999999999999999999999999999999999999999984
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=6.6e-44 Score=261.93 Aligned_cols=140 Identities=48% Similarity=0.896 Sum_probs=134.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEecccccccccCCC
Q 030958 8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDG 87 (168)
Q Consensus 8 ~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G 87 (168)
+||++|++++++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+.+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~-~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPV-EENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEEC-CCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCC
Confidence 79999999999999999999986 67999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Q 030958 88 KVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSSPNDESPANIDAAKEWRERKDEFKKKVSRCV 160 (168)
Q Consensus 88 ~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~ 160 (168)
.||+++|.. .+|+|++++.+||.+|+++|.+|+.++|+|.+||.+|++|+++|+++|++++
T Consensus 81 ~icl~~l~~------------~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 81 KICLSILKT------------HGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCchhhcCC------------CCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999972 3499999999999999999999999999999999999999999999999874
No 11
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=4.1e-43 Score=258.84 Aligned_cols=144 Identities=47% Similarity=0.894 Sum_probs=138.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEecccccccccCCC
Q 030958 8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDG 87 (168)
Q Consensus 8 ~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G 87 (168)
+||++|++++++++++|+++.+..++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.++++||||+.+|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 59999999999999999999887445999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHH
Q 030958 88 KVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 163 (168)
Q Consensus 88 ~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~ 163 (168)
.||+++|.. ++|+|++++.+||.+|+++|.+|+.++|+|.|||++|++|++.|+++|+++++|+
T Consensus 81 ~icl~~l~~------------~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~ 144 (145)
T smart00212 81 EICLDILKQ------------EKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKY 144 (145)
T ss_pred CEehhhcCC------------CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 999999952 6899999999999999999999999999999999999999999999999999986
No 12
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-43 Score=260.77 Aligned_cols=145 Identities=30% Similarity=0.645 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHhhCC---CCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEeccccccc
Q 030958 6 ASLLLQKQLKDLCKNP---VDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN 82 (168)
Q Consensus 6 ~~~RL~~E~~~l~~~~---~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 82 (168)
+.+||++|.+++.+++ ..||.++.+ ++|+.+..+.|.||+|||||||+|.++|++|++|||+||+|+|.|+|||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~v-n~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPn 82 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMV-NENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPN 82 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEc-cCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCC
Confidence 8999999999999988 678999998 689999999999999999999999999999999999999999999999999
Q ss_pred ccC-CCceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Q 030958 83 VYP-DGKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSSPNDESPANIDAAKEWRERKDEFKKKVSRCVR 161 (168)
Q Consensus 83 v~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~ 161 (168)
|++ .|.|||+||+ +.|++++|++++|++||++|+.|++.+|.+..+|+.|.+|++.|.+.||.|+.
T Consensus 83 VSs~tGaICLDilk-------------d~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~ 149 (200)
T KOG0418|consen 83 VSSQTGAICLDILK-------------DQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTT 149 (200)
T ss_pred CCcccccchhhhhh-------------cccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 997 7999999997 89999999999999999999999999999999999999999999999999998
Q ss_pred HHh
Q 030958 162 KSL 164 (168)
Q Consensus 162 ~~~ 164 (168)
..+
T Consensus 150 ~fA 152 (200)
T KOG0418|consen 150 EFA 152 (200)
T ss_pred HHh
Confidence 765
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-43 Score=248.88 Aligned_cols=145 Identities=39% Similarity=0.721 Sum_probs=138.2
Q ss_pred chHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEeccccccc
Q 030958 3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN 82 (168)
Q Consensus 3 s~~~~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 82 (168)
.....|||++||..|.-...+||++.|. ++|++.|.++|.||++|+|+|-.|++.+.||.+||++||.|+|+|+.||||
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~-~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPN 105 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPE-SDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPN 105 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcC-cCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCC
Confidence 3567899999999999999999999996 779999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHH
Q 030958 83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSSPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 162 (168)
Q Consensus 83 v~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~ 162 (168)
||-.|.|||+||+ +.|+..+++++||++||++|-+||.++|+|..||++|. |.++|++.+.+.-++
T Consensus 106 VD~~GnIcLDILk-------------dKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 106 VDLSGNICLDILK-------------DKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred ccccccchHHHHH-------------HHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 9999999999997 89999999999999999999999999999999999998 999999998876554
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-41 Score=239.26 Aligned_cols=147 Identities=34% Similarity=0.679 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEecccccccccC
Q 030958 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP 85 (168)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 85 (168)
+.+||.+|+.+|++++...+.-..++++|++.|.+.|. |++-||..|.|+++|.||.+|||+||+|.|.|+|||||||+
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 78999999999999988876655567889999999997 89999999999999999999999999999999999999999
Q ss_pred CCceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhh
Q 030958 86 DGKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLE 165 (168)
Q Consensus 86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~~~ 165 (168)
.|.||+.|+. .++|.|+.++.+||.+|..++.+|+++.|++.|+|..|.+|+..|.++|.++++|+.+
T Consensus 82 ~gqvClPiis------------~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 82 KGQVCLPIIS------------AENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred CCceeeeeee------------cccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 9999999997 4999999999999999999999999999999999999999999999999999999764
No 15
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-38 Score=229.44 Aligned_cols=143 Identities=33% Similarity=0.632 Sum_probs=127.6
Q ss_pred chHHHHHHHHHHHHHhhCCCCCeEEEecC-CCCce--EEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEecccc
Q 030958 3 KSQASLLLQKQLKDLCKNPVDGFSAGLVD-ESNVF--EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79 (168)
Q Consensus 3 s~~~~~RL~~E~~~l~~~~~~g~~~~~~~-~~~~~--~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 79 (168)
.++++.||++|..++ +.+++++....+ .+++. +++++|. |+++.|.||.|.|.+.+|+.||+.||+|+|+|+||
T Consensus 26 ~s~a~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~ 102 (184)
T KOG0420|consen 26 VSAALLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVY 102 (184)
T ss_pred ccHHHHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccc
Confidence 467888999888887 445555543332 33444 5999997 99999999999999999999999999999999999
Q ss_pred cccccCCCceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Q 030958 80 HPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSSPNDESPANIDAAKEWRERKDEFKKKVSRC 159 (168)
Q Consensus 80 HPnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~ 159 (168)
||||+.+|.|||+||+ ++|+|+.++.+|+.+|+.+|.+|+++||+|.|||+.+++|++.|..+||+.
T Consensus 103 HPNId~~GnVCLnILR-------------edW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~ 169 (184)
T KOG0420|consen 103 HPNIDLDGNVCLNILR-------------EDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRA 169 (184)
T ss_pred cCCcCCcchHHHHHHH-------------hcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHH
Confidence 9999999999999998 889999999999999999999999999999999999999999999999987
Q ss_pred HH
Q 030958 160 VR 161 (168)
Q Consensus 160 ~~ 161 (168)
..
T Consensus 170 m~ 171 (184)
T KOG0420|consen 170 MS 171 (184)
T ss_pred Hh
Confidence 65
No 16
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-37 Score=227.74 Aligned_cols=143 Identities=26% Similarity=0.616 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEecccccccccC
Q 030958 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP 85 (168)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 85 (168)
..|||..|...|... +..|..+ ++++.+++|.+.||.+|||+||+++++|.+|++||++.|.|.|.++||||||+.
T Consensus 4 ~~rRid~Dv~KL~~s---~yeV~~i-nd~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe 79 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMS---DYEVTII-NDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDE 79 (189)
T ss_pred cccchhhHHHHHHhc---CCeEEEe-cCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchh
Confidence 678999999998663 4566665 778999999999999999999999999999999999999999999999999997
Q ss_pred -CCceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHH-HhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHH
Q 030958 86 -DGKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSII-SMLSSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 163 (168)
Q Consensus 86 -~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~-~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~ 163 (168)
+|.|||++++ ..|+|.+++..|+..+. .+|..||+.+|+|.|||.+|.+++++|++++|++++|+
T Consensus 80 ~SGsVCLDViN-------------QtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kY 146 (189)
T KOG0416|consen 80 ASGSVCLDVIN-------------QTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKY 146 (189)
T ss_pred ccCccHHHHHh-------------hhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 8999999998 78999999999997665 79999999999999999999999999999999999998
Q ss_pred hh
Q 030958 164 LE 165 (168)
Q Consensus 164 ~~ 165 (168)
+.
T Consensus 147 A~ 148 (189)
T KOG0416|consen 147 AT 148 (189)
T ss_pred cC
Confidence 63
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-35 Score=216.08 Aligned_cols=143 Identities=30% Similarity=0.585 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEeccccccccc
Q 030958 5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVY 84 (168)
Q Consensus 5 ~~~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 84 (168)
-.++.|.+|++.+...|+.||.|.+ +++|+....+.|.||.||||++|.|++.+.+..|||.+||+-.|+|+||||||-
T Consensus 10 ~vik~~~kEl~~l~~~PPdGIKV~~-NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa 88 (223)
T KOG0423|consen 10 NVIKQLAKELKSLDESPPDGIKVVV-NEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA 88 (223)
T ss_pred HHHHHHHHHHHhcccCCCCceEEec-ChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc
Confidence 4678999999999999999999987 588999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Q 030958 85 PDGKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSSPNDESPANIDAAKEWRERKDEFKKKVSRCVR 161 (168)
Q Consensus 85 ~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~ 161 (168)
.+|.||.+.|+ .+|+|++.|+.||+.|..+|..|++++.+|.||.++..++.++|.++||-++.
T Consensus 89 aNGEICVNtLK-------------kDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~Te 152 (223)
T KOG0423|consen 89 ANGEICVNTLK-------------KDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTE 152 (223)
T ss_pred cCceehhhhhh-------------cccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999997 89999999999999999999999999999999999999999999999998876
No 18
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-32 Score=207.64 Aligned_cols=119 Identities=30% Similarity=0.655 Sum_probs=108.6
Q ss_pred CcchHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEeccccc
Q 030958 1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80 (168)
Q Consensus 1 m~s~~~~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 80 (168)
||+.+|.|||+|||+.|.++|.++|.+.|. ++|+.+||.+|.||++|||+||.|+.+|.||++||++||.|++.|+-
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~-p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPN-- 77 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPN-PNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPN-- 77 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCC-ccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCC--
Confidence 899999999999999999999999999996 99999999999999999999999999999999999999999999973
Q ss_pred ccccCCCceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccCCC
Q 030958 81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSSPN 132 (168)
Q Consensus 81 Pnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~p~ 132 (168)
..+-.+.++||++-. .|.+.|+|+|+|.+||.+|.++|.+..
T Consensus 78 GRFktntRLCLSiSD----------fHPdsWNP~WsVStILtGLlSFM~e~~ 119 (244)
T KOG0894|consen 78 GRFKTNTRLCLSISD----------FHPDSWNPGWSVSTILTGLLSFMTEDS 119 (244)
T ss_pred CceecCceEEEeccc----------cCcCcCCCcccHHHHHHHHHHHHhcCC
Confidence 223356789999975 346999999999999999999998643
No 19
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-31 Score=187.99 Aligned_cols=114 Identities=37% Similarity=0.775 Sum_probs=108.3
Q ss_pred chHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEeccc-ccc
Q 030958 3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM-WHP 81 (168)
Q Consensus 3 s~~~~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HP 81 (168)
+..|.+||+||+.+++.+|+.|+.... .+|+.+|.+.+.|.+||.|+|.+|.+.++||+.||+..|+|.|..++ .||
T Consensus 13 s~~at~RLqKEl~e~q~~pP~G~~~~v--~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HP 90 (161)
T KOG0427|consen 13 SKIATNRLQKELSEWQNNPPTGFKHRV--TDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHP 90 (161)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcceeec--ccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCC
Confidence 467899999999999999999999884 57999999999999999999999999999999999999999999997 799
Q ss_pred cccCCCceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccCC
Q 030958 82 NVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSSP 131 (168)
Q Consensus 82 nv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~p 131 (168)
+|+.+|.|||+||. +.|+|++++.+|.++|.+||++-
T Consensus 91 HiYSNGHICL~iL~-------------d~WsPAmsv~SvClSIlSMLSSs 127 (161)
T KOG0427|consen 91 HIYSNGHICLDILY-------------DSWSPAMSVQSVCLSILSMLSSS 127 (161)
T ss_pred ceecCCeEEEEeec-------------ccCCcchhhHHHHHHHHHHHccC
Confidence 99999999999997 89999999999999999999873
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.4e-27 Score=177.89 Aligned_cols=145 Identities=24% Similarity=0.499 Sum_probs=132.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCC--CCEEEEecccccccccC
Q 030958 8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVS--PPTVRFTSEMWHPNVYP 85 (168)
Q Consensus 8 ~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~--pP~v~f~t~i~HPnv~~ 85 (168)
.-|+.|+..+.+.+.+||+|.|+ -.|-+.|.++|++. .|.|.||+|+|+|.+|++||.. -|+|.|.+.+|||+|.+
T Consensus 22 y~llAEf~lV~~ekL~gIyviPS-yan~l~WFGViFvr-~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp 99 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPS-YANKLLWFGVIFVR-KGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICP 99 (258)
T ss_pred HHHHHHHHHHHhccCCceEEccc-ccccceEEEEEEEe-cccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCC
Confidence 36788889999999999999997 88999999999975 4589999999999999999954 59999999999999998
Q ss_pred -CCceeeccCCCCCCCCCCccccCCCCCC-cCCHHHHHHHHHHhccCCCCCCc-c-cHHHHHHHHHCHHHHHHHHHHHHH
Q 030958 86 -DGKVCISILHPPGDDPNGYELATERWTP-VHTVESIVLSIISMLSSPNDESP-A-NIDAAKEWRERKDEFKKKVSRCVR 161 (168)
Q Consensus 86 -~G~iCl~~l~~~~~~~~~~~~~~~~W~p-~~~i~~iL~~i~~~l~~p~~~~p-~-n~eaa~~~~~~~~~f~~~~~~~~~ 161 (168)
++.+|++-.. ..|+. ..+|++||..+|.+|.+|+.+.+ + |+||+.+|++++++|.++|+++++
T Consensus 100 ~skeLdl~raf-------------~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk 166 (258)
T KOG0429|consen 100 KSKELDLNRAF-------------PEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVK 166 (258)
T ss_pred CccceeHhhhh-------------hhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHH
Confidence 7999998765 55988 67999999999999999998776 4 999999999999999999999999
Q ss_pred HHhhhc
Q 030958 162 KSLEML 167 (168)
Q Consensus 162 ~~~~~~ 167 (168)
.|.++|
T Consensus 167 ~sr~~i 172 (258)
T KOG0429|consen 167 ASRSMI 172 (258)
T ss_pred HHHHHh
Confidence 999886
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.2e-25 Score=169.89 Aligned_cols=113 Identities=31% Similarity=0.685 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEecccccccc
Q 030958 4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV 83 (168)
Q Consensus 4 ~~~~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 83 (168)
+++.|||++|.++++ +|...+.+.+. ++|+++|+++|.||.+|-|+||+||.+|.||.+||++||.+-.+|+- ..+
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~pl-EdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN--GRF 85 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPL-EDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN--GRF 85 (314)
T ss_pred CHHHHHHHHHHHHhc-Cchhhhhhccc-hhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC--Cce
Confidence 689999999999998 78778888887 89999999999999999999999999999999999999999999973 334
Q ss_pred cCCCceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccC
Q 030958 84 YPDGKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSS 130 (168)
Q Consensus 84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~ 130 (168)
.-+.+|||+|-+ +|.+.|.|+|+|++.|++|..+|-+
T Consensus 86 E~nkKiCLSISg----------yHPEtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 86 EVNKKICLSISG----------YHPETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred eeCceEEEEecC----------CCccccCcchhHHHHHHHHHccccC
Confidence 456789999975 6779999999999999999999865
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.1e-19 Score=158.79 Aligned_cols=119 Identities=30% Similarity=0.505 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEecc--ccccc
Q 030958 5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE--MWHPN 82 (168)
Q Consensus 5 ~~~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPn 82 (168)
...+..+.|++.|..+.+.||+|... ++.+....++|.|+.||||.+|.|.|++.||++||..||.+...+. .++||
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~vr~~-e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npn 929 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPLSLPSGIFVRAY-EDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPN 929 (1101)
T ss_pred HHHHHHHHHHHhhhccCCCceEEEec-hHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcc
Confidence 34556677888888899999999975 8899999999999999999999999999999999999999999986 48999
Q ss_pred ccCCCceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccC
Q 030958 83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSS 130 (168)
Q Consensus 83 v~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~ 130 (168)
.|.+|+|||++|++|.. ...+-|+|+.+|.+||.+||.++-+
T Consensus 930 ly~~g~vc~s~l~tw~g------~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 930 LYEDGKVCLSLLNTWHG------RGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred cccccceehhhhccccC------CCccccCcchhHHHHHHHhhhhhcc
Confidence 99999999999987542 2348899999999999999998654
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.7e-16 Score=143.25 Aligned_cols=121 Identities=33% Similarity=0.544 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEecc---ccc
Q 030958 4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE---MWH 80 (168)
Q Consensus 4 ~~~~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~H 80 (168)
....+|+++|++.+.++.++|+.+.+. +.++...+++|.||.||||++|+|.|+|.||..||..||.+.+++. .+.
T Consensus 281 ~~~skrv~ke~~llskdlpEgifvrp~-e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~n 359 (1101)
T KOG0895|consen 281 KNWSKKVAKELKLLSKDLPEGIFVRPD-EGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLN 359 (1101)
T ss_pred hhhHHHHHHHhhhhcccCCCCcccccc-ccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeec
Confidence 456789999999999999999999985 8899999999999999999999999999999999999999999997 489
Q ss_pred ccccCCCceeeccCCCCCCCCCCccccCCCCCCc-CCHHHHHHHHHHhccCC
Q 030958 81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPV-HTVESIVLSIISMLSSP 131 (168)
Q Consensus 81 Pnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~-~~i~~iL~~i~~~l~~p 131 (168)
||.+.+|+||+++|..+..- ..+.|+|. .++.++|..||.++.+.
T Consensus 360 PNlYn~GKVcLslLgTwtg~------~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 360 PNLYNDGKVCLSLLGTWTGS------RREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred CCcccCceEEeeeeeecccc------cccCCCccccchhhhhhhhhhhhccc
Confidence 99999999999999765432 12789996 89999999999987653
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1e-13 Score=98.69 Aligned_cols=119 Identities=29% Similarity=0.476 Sum_probs=93.1
Q ss_pred CcchHHHHHHHHHHHHHhhCCCCC-eEEEecCCCC--ceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEecc
Q 030958 1 MAKSQASLLLQKQLKDLCKNPVDG-FSAGLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE 77 (168)
Q Consensus 1 m~s~~~~~RL~~E~~~l~~~~~~g-~~~~~~~~~~--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 77 (168)
|+-.++.-||.+|+..=++.-.+| ++....+.+| +..|...|.||+.|+||+.+|.+.|...++||..||+|+|.++
T Consensus 1 ~~~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tk 80 (138)
T KOG0896|consen 1 MVKVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTK 80 (138)
T ss_pred CCccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEE
Confidence 444566779999999887766655 4444434445 4589999999999999999999999999999999999999999
Q ss_pred cccccccC-CCceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccC
Q 030958 78 MWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSS 130 (168)
Q Consensus 78 i~HPnv~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~ 130 (168)
+--+-|+. +|.|.-..+.. ..+|+..+++..+|..++.++..
T Consensus 81 inm~gvn~~~g~Vd~~~i~~-----------L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 81 INMNGVNSSNGVVDPRDITV-----------LARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred eeecccccCCCccCccccch-----------hhcccccchhhHHHHhhhHHHHH
Confidence 97776765 56664422221 27899999999999999865543
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=5e-09 Score=72.81 Aligned_cols=78 Identities=24% Similarity=0.470 Sum_probs=61.8
Q ss_pred EEEEEECCCCCCCCCCEEEEeccc-ccccccCCCceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhccCCC-
Q 030958 55 FNAIMTFPDNYPVSPPTVRFTSEM-WHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISMLSSPN- 132 (168)
Q Consensus 55 f~~~i~fp~~YP~~pP~v~f~t~i-~HPnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l~~p~- 132 (168)
..+.+.|+++||+.||.++...|+ --.-|-.+|.||+.+|.+ ++|+.+++|+.++++|..++..-.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~------------qgwssay~Ve~vi~qiaatlVkG~~ 80 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTK------------QGWSSAYEVERVIMQIAATLVKGGA 80 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHcc------------ccccchhhHHHHHHHHHHHhhccce
Confidence 456788999999999999988775 334455689999999974 899999999999999999988754
Q ss_pred -CCCcccHHHHHHH
Q 030958 133 -DESPANIDAAKEW 145 (168)
Q Consensus 133 -~~~p~n~eaa~~~ 145 (168)
.+.+++.+.. +|
T Consensus 81 ri~~~a~k~sk-~~ 93 (122)
T KOG0897|consen 81 RIEFPAEKSSK-LY 93 (122)
T ss_pred eEecCcchhhh-Hh
Confidence 4566655443 44
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.62 E-value=1.5e-07 Score=68.29 Aligned_cols=67 Identities=30% Similarity=0.668 Sum_probs=59.2
Q ss_pred CCcEEEEEEECCCCCCCCCCEEEEeccc---ccccccCCCceee---ccCCCCCCCCCCccccCCCCCCcCCHHHHHHHH
Q 030958 51 EGGFFNAIMTFPDNYPVSPPTVRFTSEM---WHPNVYPDGKVCI---SILHPPGDDPNGYELATERWTPVHTVESIVLSI 124 (168)
Q Consensus 51 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnv~~~G~iCl---~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i 124 (168)
.|+.+.+.|.||++||..||.|....+. +=|||+.+|.+|+ +..- +.|.|.-.+..+|.+.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~-------------D~~~P~~~~~~~l~~a 100 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVL-------------DPWDPEGIIADCLERA 100 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCccc-------------CccCHHHHHHHHHHHH
Confidence 7899999999999999999999998754 6799999999999 4432 7899999999999999
Q ss_pred HHhccC
Q 030958 125 ISMLSS 130 (168)
Q Consensus 125 ~~~l~~ 130 (168)
+.+|.+
T Consensus 101 ~~lL~~ 106 (133)
T PF14461_consen 101 IRLLED 106 (133)
T ss_pred HHHHHH
Confidence 999884
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.44 E-value=7e-07 Score=63.88 Aligned_cols=78 Identities=24% Similarity=0.459 Sum_probs=55.7
Q ss_pred ceEEEEEEeCCCCCCCCCcEE--EEEEECCCCCCCCCCEEEEeccc-----ccccccCCCceeeccCCCCCCCCCCcccc
Q 030958 35 VFEWSVSIIGPPDTLYEGGFF--NAIMTFPDNYPVSPPTVRFTSEM-----WHPNVYPDGKVCISILHPPGDDPNGYELA 107 (168)
Q Consensus 35 ~~~w~~~i~gp~~tpy~gg~f--~~~i~fp~~YP~~pP~v~f~t~i-----~HPnv~~~G~iCl~~l~~~~~~~~~~~~~ 107 (168)
+....++|.- .|+|..| .+.|.+|.+||..||.+...... -+.+|+.+|+|.+..|
T Consensus 32 LL~L~Gtipi----~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL------------- 94 (121)
T PF05743_consen 32 LLCLYGTIPI----TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL------------- 94 (121)
T ss_dssp EEEEEEEEEE----CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-------------
T ss_pred EEEEecCccc----ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-------------
Confidence 4455666632 4888777 56788999999999999886543 2449999999999999
Q ss_pred CCCCCC-cCCHHHHHHHHHHhccC
Q 030958 108 TERWTP-VHTVESIVLSIISMLSS 130 (168)
Q Consensus 108 ~~~W~p-~~~i~~iL~~i~~~l~~ 130 (168)
.+|++ ..++.+++..++..|..
T Consensus 95 -~~W~~~~s~L~~lv~~l~~~F~~ 117 (121)
T PF05743_consen 95 -QNWNPPSSNLVDLVQELQAVFSE 117 (121)
T ss_dssp -HT--TTTS-HHHHHHHHHHCCCH
T ss_pred -ccCCCCCCCHHHHHHHHHHHHhH
Confidence 67998 88999999999988864
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.03 E-value=1.8e-06 Score=62.45 Aligned_cols=84 Identities=19% Similarity=0.269 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhh-------CCCCCeEEEecCCCCceEEEEEEeCCCCCCCC--CcEEEEEEECCCCCCCCCCEEEEe
Q 030958 5 QASLLLQKQLKDLCK-------NPVDGFSAGLVDESNVFEWSVSIIGPPDTLYE--GGFFNAIMTFPDNYPVSPPTVRFT 75 (168)
Q Consensus 5 ~~~~RL~~E~~~l~~-------~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~--gg~f~~~i~fp~~YP~~pP~v~f~ 75 (168)
....||.+||+.|.+ +...-+.++ + +.+=..|.+...- .++ -..|.+++.+|..||..||.|...
T Consensus 24 ~W~~RLKEEy~aLI~Yv~~nK~~DndWF~le-s-n~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lP 97 (161)
T PF08694_consen 24 LWVQRLKEEYQALIKYVENNKENDNDWFRLE-S-NKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALP 97 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---EEEE-E--TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-G
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeEEec-c-CCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceecc
Confidence 457899999999754 122234444 2 3344455443321 011 134677788899999999999875
Q ss_pred ccc-ccccccCCCceeeccC
Q 030958 76 SEM-WHPNVYPDGKVCISIL 94 (168)
Q Consensus 76 t~i-~HPnv~~~G~iCl~~l 94 (168)
.-. -..-.+.+|+|||++=
T Consensus 98 eLdGKTaKMYRGGkIClt~H 117 (161)
T PF08694_consen 98 ELDGKTAKMYRGGKICLTDH 117 (161)
T ss_dssp GGTTT-SSBCCCCBB---TT
T ss_pred ccCCchhhhhcCceEeeecc
Confidence 422 2334567999999863
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.0002 Score=58.91 Aligned_cols=80 Identities=26% Similarity=0.511 Sum_probs=62.6
Q ss_pred CceEEEEEEeCCCCCCCCCcEEE--EEEECCCCCCCCCCEEEEeccc-----ccccccCCCceeeccCCCCCCCCCCccc
Q 030958 34 NVFEWSVSIIGPPDTLYEGGFFN--AIMTFPDNYPVSPPTVRFTSEM-----WHPNVYPDGKVCISILHPPGDDPNGYEL 106 (168)
Q Consensus 34 ~~~~w~~~i~gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~i-----~HPnv~~~G~iCl~~l~~~~~~~~~~~~ 106 (168)
+++...++|. .+|.|.+|. +.|.+.+.||..||.+.....- .|-+|+++|+|.|..|
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL------------ 114 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL------------ 114 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh------------
Confidence 3445555553 468887765 6678899999999999765431 4899999999999999
Q ss_pred cCCCCCC-cCCHHHHHHHHHHhccCC
Q 030958 107 ATERWTP-VHTVESIVLSIISMLSSP 131 (168)
Q Consensus 107 ~~~~W~p-~~~i~~iL~~i~~~l~~p 131 (168)
.+|.+ +..+..++..|.+.|.++
T Consensus 115 --h~W~~pssdLv~Liq~l~a~f~~~ 138 (365)
T KOG2391|consen 115 --HNWDPPSSDLVGLIQELIAAFSED 138 (365)
T ss_pred --ccCCCccchHHHHHHHHHHHhcCC
Confidence 46988 789999999998888764
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.00018 Score=51.50 Aligned_cols=82 Identities=20% Similarity=0.311 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCc----------EEEEEEECCCCCCCCCCEEEE
Q 030958 5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGG----------FFNAIMTFPDNYPVSPPTVRF 74 (168)
Q Consensus 5 ~~~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f 74 (168)
...+||.+||+.|..- + .-+.++-..|.-.-..+.||-|-|. .|.+++.+|-.||..+|.|..
T Consensus 27 ~wvqrlkeey~sli~y------v-qnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeial 99 (167)
T KOG3357|consen 27 LWVQRLKEEYQSLIAY------V-QNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIAL 99 (167)
T ss_pred HHHHHHHHHHHHHHHH------H-HhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccc
Confidence 3568999999998541 0 0111112223222234667777664 366677779999999999876
Q ss_pred eccc-ccccccCCCceeecc
Q 030958 75 TSEM-WHPNVYPDGKVCISI 93 (168)
Q Consensus 75 ~t~i-~HPnv~~~G~iCl~~ 93 (168)
..-- -.--.+.+|+|||..
T Consensus 100 peldgktakmyrggkiclt~ 119 (167)
T KOG3357|consen 100 PELDGKTAKMYRGGKICLTD 119 (167)
T ss_pred cccCchhhhhhcCceEeecc
Confidence 4321 112345789999964
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=97.18 E-value=0.0059 Score=43.64 Aligned_cols=103 Identities=16% Similarity=0.297 Sum_probs=67.3
Q ss_pred CCeEEEecCCCCceEEEEEEeC--CCCCCCCCcEEEEEEECCCCCCCCCCEEEEecccccccccCCCce--eeccCC-CC
Q 030958 23 DGFSAGLVDESNVFEWSVSIIG--PPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKV--CISILH-PP 97 (168)
Q Consensus 23 ~g~~~~~~~~~~~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~i--Cl~~l~-~~ 97 (168)
.|+..+.+ .+.-..|.+ |.| .+.+.|.+..-.+-|.+|+.||..+|.+.+..+-.... .+|.| |-+... ..
T Consensus 12 ~g~~~E~v-~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~ 87 (122)
T PF14462_consen 12 RGLRWETV-TEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFD 87 (122)
T ss_pred cCceEEEE-EeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcC
Confidence 35666665 334445654 555 55667999999999999999999999887776643221 23444 443321 11
Q ss_pred CCCCCCccccCCCCCCc-CCHHHHHHHHHHhcc
Q 030958 98 GDDPNGYELATERWTPV-HTVESIVLSIISMLS 129 (168)
Q Consensus 98 ~~~~~~~~~~~~~W~p~-~~i~~iL~~i~~~l~ 129 (168)
|-.--+||.|...|+|. -+|.+.|..|...|.
T Consensus 88 G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 88 GRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred CeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 22222567777889994 589998888877664
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.51 E-value=0.014 Score=40.15 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEe--CCCCCCCCCcEEEEEEECCCCCCCCCCEEEEeccc
Q 030958 8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSII--GPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78 (168)
Q Consensus 8 ~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~--gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 78 (168)
.+...|+..|+.--+..+ ... ...+...+.+.+. ....+.-....+.+.+.||++||..+|.|.+.+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEI-ESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSS-TSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-ccc-ccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 467788888876444333 111 2344556666662 12334455678999999999999999999877754
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.14 E-value=0.094 Score=35.62 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=22.9
Q ss_pred CCcEEEEEEECCCCCCCCCCEEEEecc
Q 030958 51 EGGFFNAIMTFPDNYPVSPPTVRFTSE 77 (168)
Q Consensus 51 ~gg~f~~~i~fp~~YP~~pP~v~f~t~ 77 (168)
....+.+.+.||++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 445689999999999999999987764
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.77 E-value=0.014 Score=43.86 Aligned_cols=62 Identities=21% Similarity=0.402 Sum_probs=48.8
Q ss_pred EEEECCCCCCCCCCEEEEecccc---cccccCC-----CceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhc
Q 030958 57 AIMTFPDNYPVSPPTVRFTSEMW---HPNVYPD-----GKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISML 128 (168)
Q Consensus 57 ~~i~fp~~YP~~pP~v~f~t~i~---HPnv~~~-----G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~l 128 (168)
+.|.|+.+||..+|.|.+.-+.| +|+++.. ..+|+.--. -..|.+..++..+|..|..-|
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~------------~~e~~~~~g~~~~l~rl~~Wl 124 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGP------------WSEWRPSWGPEGFLDRLFDWL 124 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCC------------HHHhhhccCHHHHHHHHHHHH
Confidence 45789999999999887776653 5778765 679986543 267999999999999998777
Q ss_pred cC
Q 030958 129 SS 130 (168)
Q Consensus 129 ~~ 130 (168)
..
T Consensus 125 ~~ 126 (162)
T PF14457_consen 125 RD 126 (162)
T ss_pred HH
Confidence 54
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=89.98 E-value=0.78 Score=37.64 Aligned_cols=86 Identities=15% Similarity=0.357 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEecccccccccCC
Q 030958 7 SLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPD 86 (168)
Q Consensus 7 ~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~ 86 (168)
..+|.+|+.++..+.. +.+.. ++++...++.+.. +.....++|.+|.+||.++|.+...-++
T Consensus 101 ys~ll~EIe~IGW~kl--~~i~~--d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~-------- 162 (291)
T PF09765_consen 101 YSNLLKEIEAIGWDKL--VQIQF--DDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPI-------- 162 (291)
T ss_dssp C-CHHHHHHHHHCGCC--EEEEE---CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS--------
T ss_pred HHHHHHHHHHhccccc--eEEec--CCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCc--------
Confidence 4578889998866654 44432 5578888888863 2267889999999999999975433322
Q ss_pred CceeeccCCCCCCCCCCccccCCCCCC-cCCHHHHHHHHHHhcc
Q 030958 87 GKVCISILHPPGDDPNGYELATERWTP-VHTVESIVLSIISMLS 129 (168)
Q Consensus 87 G~iCl~~l~~~~~~~~~~~~~~~~W~p-~~~i~~iL~~i~~~l~ 129 (168)
.+ ...|++ ..++.+++.+.+..+.
T Consensus 163 -----~~--------------~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 163 -----PF--------------SLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp ------H--------------HHHHHCHT-SHHHHHHHHHHHHH
T ss_pred -----ch--------------hhhhcccccCHHHHHHHHHHHHH
Confidence 11 145888 7788888777765553
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.50 E-value=3.6 Score=38.03 Aligned_cols=69 Identities=17% Similarity=0.315 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcE-EEEEEECCCCCCCC-CCEEEEecc
Q 030958 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGF-FNAIMTFPDNYPVS-PPTVRFTSE 77 (168)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~-f~~~i~fp~~YP~~-pP~v~f~t~ 77 (168)
..+-|.+|+.-|-. .-+.+.++..+. .-..-.+.+.||-... .|.+ .++.|.||.+||.+ +|++.|..+
T Consensus 421 ~pQnLgeE~S~Ig~-k~~nV~fEkidv-a~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 421 LPQNLGEEFSLIGV-KIRNVNFEKIDV-ADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhhHHhHHhHhhc-cccccceEeecc-ccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 34556777766633 333555664422 3345566777755433 4444 58899999999998 589998765
No 37
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=80.68 E-value=8.3 Score=32.26 Aligned_cols=42 Identities=24% Similarity=0.489 Sum_probs=35.3
Q ss_pred ceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEec-cccccc
Q 030958 35 VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS-EMWHPN 82 (168)
Q Consensus 35 ~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPn 82 (168)
...+.+.| ||.|-..+-+|.|...||..||.+.|-. .-|+|-
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 45677777 6999999999999999999999999963 347873
No 38
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=80.04 E-value=7.2 Score=30.51 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhCCCCCe-EEEecCCCCceEEEEEEeCCCC--CCCCCcEEEEEEECCCCCCCCCCEEE
Q 030958 9 LLQKQLKDLCKNPVDGF-SAGLVDESNVFEWSVSIIGPPD--TLYEGGFFNAIMTFPDNYPVSPPTVR 73 (168)
Q Consensus 9 RL~~E~~~l~~~~~~g~-~~~~~~~~~~~~w~~~i~gp~~--tpy~gg~f~~~i~fp~~YP~~pP~v~ 73 (168)
-...|+..|...-+.-+ .+. +.++..+.+.|---.+ .-+.| .+.+.+.++++||..||.|.
T Consensus 6 eQe~E~EaLeSIY~de~~~i~---~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 6 EQEEELEALESIYPDEFKHIN---SEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred HHHHHHHHHHHhccchhhhhh---ccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCccee
Confidence 34556666665444333 222 3344446666642111 11223 78899999999999999993
No 39
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=76.70 E-value=3.5 Score=31.12 Aligned_cols=20 Identities=35% Similarity=0.702 Sum_probs=15.1
Q ss_pred eccccc---ccccCCCceeeccC
Q 030958 75 TSEMWH---PNVYPDGKVCISIL 94 (168)
Q Consensus 75 ~t~i~H---Pnv~~~G~iCl~~l 94 (168)
.|++|| +||+.+|+||+.-.
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~ 111 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNN 111 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCC
Confidence 455666 49999999999553
No 40
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=57.94 E-value=77 Score=23.69 Aligned_cols=116 Identities=14% Similarity=0.214 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhhCC----CCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEecc-----
Q 030958 7 SLLLQKQLKDLCKNP----VDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE----- 77 (168)
Q Consensus 7 ~~RL~~E~~~l~~~~----~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~----- 77 (168)
.+..-+|++.+.... ..|+.+.. .+.-...+++-.|+-.|-.- ...+++.|. ||-..||.|.|+.+
T Consensus 7 rakFdR~V~~~~~~~~a~r~rgwfLiq---a~fP~~~~iF~~~kvaP~~~-~~~lr~d~~-n~Dl~PPSV~fvDp~T~~~ 81 (177)
T PF14455_consen 7 RAKFDRQVGRFRPRADAYRMRGWFLIQ---ASFPTADVIFAAPKVAPRSI-GLRLRFDFT-NWDLRPPSVVFVDPFTGTP 81 (177)
T ss_pred HHHHHHHHhhhhhhhhHhhhcCeEEEE---ccCceEEEEeeCCccCcccc-ceEEEEecc-ccCcCCCceEEeccccCCc
Confidence 344566777765432 35676643 24444555554455555332 245666664 69999999999877
Q ss_pred -------------------------cccc----------cccC-CCc--eeeccCCCCCCCCCCccccCCCC-----CCc
Q 030958 78 -------------------------MWHP----------NVYP-DGK--VCISILHPPGDDPNGYELATERW-----TPV 114 (168)
Q Consensus 78 -------------------------i~HP----------nv~~-~G~--iCl~~l~~~~~~~~~~~~~~~~W-----~p~ 114 (168)
++|+ .-++ +|+ +|+.-.+ |++.+.+-.++.| +..
T Consensus 82 ~~~k~l~~~mlr~~~L~~app~~~~~l~qq~~~s~~~~~~ah~~~~~pF~Cm~G~r---EYH~h~sH~gd~W~~~Rgsg~ 158 (177)
T PF14455_consen 82 LARKDLGLKMLRRPHLPGAPPEMISVLMQQQALSLQDFLSAHPNTGRPFLCMRGVR---EYHTHPSHTGDLWLLHRGSGE 158 (177)
T ss_pred ccccccchhhhhcCCCCCCCchhhhhcccccchhhhhhccCCCCCCCcEEEeccch---hhcCCcccccchHhhhcccCC
Confidence 1233 1112 344 8987665 5666666666778 346
Q ss_pred CCHHHHHHHHHHhccC
Q 030958 115 HTVESIVLSIISMLSS 130 (168)
Q Consensus 115 ~~i~~iL~~i~~~l~~ 130 (168)
.++.-||.+|...-..
T Consensus 159 ~~L~~Il~qiw~~~~~ 174 (177)
T PF14455_consen 159 GDLGGILDQIWRAWKN 174 (177)
T ss_pred chhHHHHHHHHHhccC
Confidence 7888899888765443
No 41
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=57.83 E-value=17 Score=28.76 Aligned_cols=18 Identities=22% Similarity=0.818 Sum_probs=13.6
Q ss_pred cccccc---cccCCCceeecc
Q 030958 76 SEMWHP---NVYPDGKVCISI 93 (168)
Q Consensus 76 t~i~HP---nv~~~G~iCl~~ 93 (168)
|++||. ||+.+|+||+.-
T Consensus 131 T~L~~aPffNV~~~G~VC~G~ 151 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGN 151 (228)
T ss_pred CeeccCCcCccCCCCeEeeCC
Confidence 445663 899999999854
No 42
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=56.08 E-value=17 Score=29.56 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=28.2
Q ss_pred ccHHHHHHHHHCHHHHHHHHHHHHHHHhhhc
Q 030958 137 ANIDAAKEWRERKDEFKKKVSRCVRKSLEML 167 (168)
Q Consensus 137 ~n~eaa~~~~~~~~~f~~~~~~~~~~~~~~~ 167 (168)
.+.+|+..|.++++.|...+.+.++++-++|
T Consensus 239 ~s~~aa~~F~~~P~~yi~~v~~~ar~~peLI 269 (281)
T PF12018_consen 239 SSREAAYRFAEDPERYIQAVLEKARKNPELI 269 (281)
T ss_pred CCHHHHHHHHHCHHHHHHHHHHHHhhCHHHH
Confidence 4689999999999999999999999988765
No 43
>smart00340 HALZ homeobox associated leucin zipper.
Probab=52.09 E-value=13 Score=21.49 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhC
Q 030958 6 ASLLLQKQLKDLCKN 20 (168)
Q Consensus 6 ~~~RL~~E~~~l~~~ 20 (168)
-.+||++|+++|...
T Consensus 20 eNrRL~ke~~eLral 34 (44)
T smart00340 20 ENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHhc
Confidence 458999999999764
No 44
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=51.27 E-value=25 Score=25.56 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=22.8
Q ss_pred CCcEEEEEEECCCCCC-CCCCEEEEec
Q 030958 51 EGGFFNAIMTFPDNYP-VSPPTVRFTS 76 (168)
Q Consensus 51 ~gg~f~~~i~fp~~YP-~~pP~v~f~t 76 (168)
+.|.|.|.-.+|-.|| .+||.|.|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 3488999999999999 9999998764
No 45
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=48.15 E-value=29 Score=26.57 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=23.1
Q ss_pred CCcEEEEEEECCCCCCCCCCEEEEec
Q 030958 51 EGGFFNAIMTFPDNYPVSPPTVRFTS 76 (168)
Q Consensus 51 ~gg~f~~~i~fp~~YP~~pP~v~f~t 76 (168)
+.|.|.|.=.+|--||.+||-|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 35889999999999999999998865
No 46
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=46.16 E-value=32 Score=28.84 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=22.3
Q ss_pred CCcEEEEEEECCCCCCCCCCEEEEec
Q 030958 51 EGGFFNAIMTFPDNYPVSPPTVRFTS 76 (168)
Q Consensus 51 ~gg~f~~~i~fp~~YP~~pP~v~f~t 76 (168)
.+-.|-++|.+|..||...|.++|.+
T Consensus 304 ~~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 304 GDFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred CCeEEEEEEeccCCCCCcCCeEEEEe
Confidence 34458889999999999999999876
No 47
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=38.56 E-value=52 Score=24.42 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=22.1
Q ss_pred CcEEEEEEECCCCCC-----CCCCEEEEec
Q 030958 52 GGFFNAIMTFPDNYP-----VSPPTVRFTS 76 (168)
Q Consensus 52 gg~f~~~i~fp~~YP-----~~pP~v~f~t 76 (168)
.|.|.|.-.+|--|| .+||-|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 488999999999999 8999998765
No 48
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=36.04 E-value=1.3e+02 Score=19.83 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=28.4
Q ss_pred eEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEEEEecccc
Q 030958 36 FEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79 (168)
Q Consensus 36 ~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 79 (168)
.+|.+-+.|+.+..-..-+=++...+.+.|+. |...+..+-|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 57999999988765556667788888888776 6666665533
No 49
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=35.14 E-value=49 Score=27.51 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.3
Q ss_pred cEEEEEEECCCCCCCCCCEEEEecc
Q 030958 53 GFFNAIMTFPDNYPVSPPTVRFTSE 77 (168)
Q Consensus 53 g~f~~~i~fp~~YP~~pP~v~f~t~ 77 (168)
-.+.+.+..++.||...|.|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4677889999999999999999876
No 50
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=33.61 E-value=1.1e+02 Score=24.57 Aligned_cols=47 Identities=15% Similarity=0.372 Sum_probs=29.0
Q ss_pred CceEEEEEEeCCCCCCCCC---cEEEEEEECC-----CCCCCCCCEEEEeccccc
Q 030958 34 NVFEWSVSIIGPPDTLYEG---GFFNAIMTFP-----DNYPVSPPTVRFTSEMWH 80 (168)
Q Consensus 34 ~~~~w~~~i~gp~~tpy~g---g~f~~~i~fp-----~~YP~~pP~v~f~t~i~H 80 (168)
|..-|++....-+...-.| +.|+..+.+. -|-||+||+|..+++-|.
T Consensus 101 Dp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft 155 (276)
T PF00845_consen 101 DPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFT 155 (276)
T ss_pred CCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeecccC
Confidence 3344555554322222233 3456666664 678999999999998664
No 51
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=29.94 E-value=62 Score=24.61 Aligned_cols=51 Identities=14% Similarity=0.290 Sum_probs=36.8
Q ss_pred CCCcCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhhhc
Q 030958 111 WTPVHTVESIVLSIISMLSSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLEML 167 (168)
Q Consensus 111 W~p~~~i~~iL~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~~~~~ 167 (168)
|-.-..+..+...|...|..-++ +-+..|++|.+.|.++..+.-++.++.+
T Consensus 111 Wldp~~~~~~a~~I~~~L~~~dP------~~~~~y~~N~~~~~~~l~~l~~~~~~~l 161 (203)
T cd01145 111 WLDPNNAPALAKALADALIELDP------SEQEEYKENLRVFLAKLNKLLREWERQF 161 (203)
T ss_pred ecCHHHHHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 76666677888888888877443 3356788888999888877766665543
No 52
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.93 E-value=81 Score=25.46 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=38.6
Q ss_pred CCCCcCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhhhc
Q 030958 110 RWTPVHTVESIVLSIISMLSSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLEML 167 (168)
Q Consensus 110 ~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~~~~~ 167 (168)
-|-.-..+..++..|..-|..-+ ++.+..|++|-+.|.++.++.-++.+..+
T Consensus 123 iWldp~n~~~~a~~I~~~L~~~d------P~~~~~y~~N~~~~~~~L~~l~~~~~~~~ 174 (286)
T cd01019 123 LWLSPENAAEVAQAVAEKLSALD------PDNAATYAANLEAFNARLAELDATIKERL 174 (286)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHC------chhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46555567777888888887633 45567899999999999888877776654
No 53
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.70 E-value=1.1e+02 Score=23.43 Aligned_cols=55 Identities=11% Similarity=0.169 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCCCCcEEEEEEECCCCCCCCCCEE
Q 030958 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTV 72 (168)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~g~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v 72 (168)
..+||++|++.+.++-...++.-|. -+-...+.+.|+.-+ +...|.++-.+-|++
T Consensus 120 ~~~~iq~EIraviRQItasVtfLP~-Le~~ctFdvLiyTdk-----------D~~vP~~W~eS~~~~ 174 (203)
T KOG3285|consen 120 DLKRIQNEIRAVIRQITASVTFLPL-LEEICTFDVLIYTDK-----------DTEVPEKWDESGPKL 174 (203)
T ss_pred HHHHHHHHHHHHHHHHhhheeeccc-ccceeEEEEEEEeCC-----------CccCCcchhcCCCeE
Confidence 4689999999999988888888776 445678888886433 345677776666654
No 54
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=28.37 E-value=1.5e+02 Score=25.92 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=13.8
Q ss_pred CcEEEEEEECCCCCCCC
Q 030958 52 GGFFNAIMTFPDNYPVS 68 (168)
Q Consensus 52 gg~f~~~i~fp~~YP~~ 68 (168)
|-...+.++||.+|+..
T Consensus 208 Ge~k~i~vtFP~dy~a~ 224 (441)
T COG0544 208 GEEKDIKVTFPEDYHAE 224 (441)
T ss_pred CCeeEEEEEcccccchh
Confidence 34567899999999986
No 55
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=27.67 E-value=91 Score=23.98 Aligned_cols=26 Identities=23% Similarity=0.361 Sum_probs=21.3
Q ss_pred CCcEEEEEEECCCCCCC-----CCCEEEEec
Q 030958 51 EGGFFNAIMTFPDNYPV-----SPPTVRFTS 76 (168)
Q Consensus 51 ~gg~f~~~i~fp~~YP~-----~pP~v~f~t 76 (168)
+.|.|.|.-..|-.||. +||-|.|.-
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V 125 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVSV 125 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 34789999999999998 888886653
No 56
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=27.49 E-value=1.6e+02 Score=19.72 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=20.1
Q ss_pred CCCcEEEEEEECCCCCCCCCCEEEEecc
Q 030958 50 YEGGFFNAIMTFPDNYPVSPPTVRFTSE 77 (168)
Q Consensus 50 y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 77 (168)
-+|..+.|.-.-|..|| +|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 35667788887888888 588988865
No 57
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=27.30 E-value=66 Score=25.15 Aligned_cols=54 Identities=19% Similarity=0.409 Sum_probs=41.1
Q ss_pred CCCCEEEEecccccccccC--CCceeeccCCCCCCCCCCccccCCCC--CCcCCHHHHHHHHHHhccCCCC
Q 030958 67 VSPPTVRFTSEMWHPNVYP--DGKVCISILHPPGDDPNGYELATERW--TPVHTVESIVLSIISMLSSPND 133 (168)
Q Consensus 67 ~~pP~v~f~t~i~HPnv~~--~G~iCl~~l~~~~~~~~~~~~~~~~W--~p~~~i~~iL~~i~~~l~~p~~ 133 (168)
.+||.|.|-.+.|.-.|+- -|.|--.+.+ .+| -|.-++.+-|..|..+|-.|+.
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelan-------------agrplfpg~dvddqlkrif~~lg~p~e 224 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELAN-------------AGRPLFPGNDVDDQLKRIFRLLGTPTE 224 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhh-------------cCCCCCCCCcHHHHHHHHHHHhCCCcc
Confidence 4699999999999988873 4655555554 445 5678889999999888888753
No 58
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=25.49 E-value=68 Score=23.18 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=21.2
Q ss_pred CCCCceEEEEEEeCCCCCCCCC-cEEEEEEEC
Q 030958 31 DESNVFEWSVSIIGPPDTLYEG-GFFNAIMTF 61 (168)
Q Consensus 31 ~~~~~~~w~~~i~gp~~tpy~g-g~f~~~i~f 61 (168)
...|...|.|++.|++||+... .+|-+.+.|
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred cCCCCcceEEEEECCCCcceeccccchheeeH
Confidence 3667888999999999987653 344444333
No 59
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=24.85 E-value=2e+02 Score=18.94 Aligned_cols=26 Identities=4% Similarity=0.093 Sum_probs=20.7
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHh
Q 030958 139 IDAAKEWRERKDEFKKKVSRCVRKSL 164 (168)
Q Consensus 139 ~eaa~~~~~~~~~f~~~~~~~~~~~~ 164 (168)
.+...++++|+++|.+..++.++.-.
T Consensus 7 D~L~~LA~~dPe~fe~lr~~~~ee~I 32 (83)
T PF11333_consen 7 DELKELAQNDPEAFEQLRQELIEEMI 32 (83)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 46778899999999988888776543
No 60
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=24.00 E-value=1.4e+02 Score=26.71 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=22.4
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHhh
Q 030958 139 IDAAKEWRERKDEFKKKVSRCVRKSLE 165 (168)
Q Consensus 139 ~eaa~~~~~~~~~f~~~~~~~~~~~~~ 165 (168)
.|+.++..+|+++|+++|++..++.-+
T Consensus 272 eea~~l~~~dp~~~~~~v~~Sl~rhv~ 298 (546)
T PF01175_consen 272 EEANELRAEDPEEFKERVQESLARHVE 298 (546)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 477888889999999999998876543
No 61
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=23.88 E-value=27 Score=18.82 Aligned_cols=15 Identities=33% Similarity=0.937 Sum_probs=9.2
Q ss_pred cccccccCCCc-eeec
Q 030958 78 MWHPNVYPDGK-VCIS 92 (168)
Q Consensus 78 i~HPnv~~~G~-iCl~ 92 (168)
.|||.++.+|+ .|..
T Consensus 2 ~yHPg~~~~g~W~CC~ 17 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCK 17 (32)
T ss_dssp EE-SS-EETTCESSSS
T ss_pred CcCCCcccCCcCcCCC
Confidence 48999998776 5653
No 62
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=23.59 E-value=1.2e+02 Score=23.10 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=19.5
Q ss_pred CcEEEEEEECCCCCCC-----CCCEEEEe
Q 030958 52 GGFFNAIMTFPDNYPV-----SPPTVRFT 75 (168)
Q Consensus 52 gg~f~~~i~fp~~YP~-----~pP~v~f~ 75 (168)
.|.|.|.-.+|--||. +||-|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3789999999999995 77777554
No 63
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.81 E-value=1.2e+02 Score=23.98 Aligned_cols=52 Identities=13% Similarity=0.249 Sum_probs=37.5
Q ss_pred CCCCcCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhhhc
Q 030958 110 RWTPVHTVESIVLSIISMLSSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLEML 167 (168)
Q Consensus 110 ~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~~~~~ 167 (168)
-|-.-.....+...|...|..-+++ -+..|.+|.++|.++.++..++..+.+
T Consensus 97 ~Wldp~n~~~~a~~I~~~L~~~dP~------~~~~y~~N~~~~~~~l~~l~~~~~~~~ 148 (264)
T cd01020 97 LWYDPETMSKVANALADALVKADPD------NKKYYQANAKKFVASLKPLAAKIAELS 148 (264)
T ss_pred eecCHhHHHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3766666788888898888874433 345788899999888877766665543
No 64
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.49 E-value=43 Score=25.81 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=22.4
Q ss_pred CCceeeccCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHh
Q 030958 86 DGKVCISILHPPGDDPNGYELATERWTPVHTVESIVLSIISM 127 (168)
Q Consensus 86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~~ 127 (168)
.+..|++||. ..|+|.+|++.-+.-++..
T Consensus 135 ~~~f~~sIlD-------------r~Y~pdmt~eea~~lmkKC 163 (200)
T KOG0177|consen 135 GSYFCLSILD-------------RYYKPDMTIEEALDLMKKC 163 (200)
T ss_pred hhhhhHHHHH-------------hhhCCCCCHHHHHHHHHHH
Confidence 4679999996 7899999988776555443
No 65
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=22.45 E-value=2.4e+02 Score=25.01 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=21.6
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHh
Q 030958 139 IDAAKEWRERKDEFKKKVSRCVRKSL 164 (168)
Q Consensus 139 ~eaa~~~~~~~~~f~~~~~~~~~~~~ 164 (168)
.|+.++-.+|+++|.+.|++..++.-
T Consensus 282 ee~~~lr~~d~~~~~~~a~~sm~~hv 307 (561)
T COG2987 282 EEADELREEDPDKYRKLARASMARHV 307 (561)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 57888888999999999998877543
No 66
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.72 E-value=1.2e+02 Score=24.11 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=37.0
Q ss_pred CCCCCcCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhhhc
Q 030958 109 ERWTPVHTVESIVLSIISMLSSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLEML 167 (168)
Q Consensus 109 ~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~~~~~ 167 (168)
--|-.-..+..++..|...|..-++ +-+..|++|-+.|.++.++.-++..+.+
T Consensus 113 H~Wldp~~~~~~a~~I~~~L~~~dP------~~~~~y~~N~~~~~~~L~~l~~~~~~~~ 165 (266)
T cd01018 113 HIWLSPANAKIMAENIYEALAELDP------QNATYYQANLDALLAELDALDSEIRTIL 165 (266)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3476656677888888888887443 3356788888888887777666655443
No 67
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=20.69 E-value=70 Score=19.85 Aligned_cols=12 Identities=33% Similarity=0.451 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHh
Q 030958 7 SLLLQKQLKDLC 18 (168)
Q Consensus 7 ~~RL~~E~~~l~ 18 (168)
.+||++||+++-
T Consensus 36 r~rL~kEL~d~D 47 (59)
T PF12065_consen 36 RQRLRKELQDMD 47 (59)
T ss_pred HHHHHHHHHHcc
Confidence 469999999983
No 68
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=20.22 E-value=2.3e+02 Score=23.76 Aligned_cols=38 Identities=32% Similarity=0.583 Sum_probs=25.4
Q ss_pred CCcEEEEEEECCCCC-----CCCCCEEEEecccccccccCCCc
Q 030958 51 EGGFFNAIMTFPDNY-----PVSPPTVRFTSEMWHPNVYPDGK 88 (168)
Q Consensus 51 ~gg~f~~~i~fp~~Y-----P~~pP~v~f~t~i~HPnv~~~G~ 88 (168)
+|...-++..|=..- +...|+|.|.-.+|||||-+--+
T Consensus 286 ~g~~ll~ddsf~ha~~~dgs~eds~rvV~~V~lwhpevq~~~r 328 (334)
T KOG3696|consen 286 EGKCLLYDDSFLHALQHDGSSEDSPRVVFTVDLWHPEVQPAER 328 (334)
T ss_pred ccceeEeechhhcccccCCCcccCceEEEEEeccCcccccccc
Confidence 344445556554333 33469999999999999976433
No 69
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=20.20 E-value=52 Score=24.03 Aligned_cols=17 Identities=29% Similarity=0.767 Sum_probs=12.7
Q ss_pred EEEEEECCCCCCCCCCE
Q 030958 55 FNAIMTFPDNYPVSPPT 71 (168)
Q Consensus 55 f~~~i~fp~~YP~~pP~ 71 (168)
|+-.-.+|.|||+.+|-
T Consensus 104 YR~KW~LP~dYPMvAPn 120 (148)
T COG4957 104 YRAKWGLPPDYPMVAPN 120 (148)
T ss_pred HHHhcCCCCCCCccchH
Confidence 33445689999999884
Done!