AmiGO: BLAST Results


BLAST match view associations BLAST with RPT3 RPT3 RPT3 AT5G58290	protein from Arabidopsis thaliana	6.4e-83
BLAST match view associations BLAST with psmC4 psmC4 psmC4 HIV TAT binding-protein-related	gene from Dictyostelium discoideum	4.6e-73
BLAST match view associations BLAST with Rpt3 Rpt3 Rpt3 Regulatory particle triple-A ATPase 3	protein from Drosophila melanogaster	7.5e-73
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Bos taurus	6.1e-71
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Bos taurus	6.1e-71
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 Uncharacterized protein	protein from Canis lupus familiaris	6.1e-71
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Homo sapiens	6.1e-71
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Macaca fascicularis	6.1e-71
BLAST match view associations BLAST with Psmc4 Psmc4 Psmc4 proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein from Mus musculus	6.1e-71
BLAST match view associations BLAST with Psmc4 Psmc4 Psmc4 proteasome (prosome, macropain) 26S subunit, ATPase, 4	gene from Rattus norvegicus	6.1e-71
BLAST match view associations BLAST with psmc4 psmc4 psmc4 proteasome (prosome, macropain) 26S subunit, ATPase, 4	gene_product from Danio rerio	1.6e-70
BLAST match view associations BLAST with rpt-3 rpt-3 rpt-3	gene from Caenorhabditis elegans	8.9e-70
BLAST match view associations BLAST with Rpt3R Rpt3R Rpt3R Regulatory particle triple-A ATPase 3-related	protein from Drosophila melanogaster	5.6e-68
BLAST match view associations BLAST with PFD0665c PFD0665c PFD0665c 26s proteasome aaa-ATPase subunit Rpt3, putative	gene from Plasmodium falciparum	1.7e-66
BLAST match view associations BLAST with PFD0665c PFD0665c PFD0665c 26S proteasome AAA-ATPase subunit RPT3, putative	protein from Plasmodium falciparum 3D7	1.7e-66
BLAST match view associations BLAST with RPT3 RPT3 RPT3 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	1.9e-58
BLAST match view associations BLAST with PR26 PR26 PR26	gene_product from Candida albicans	6.6e-58
BLAST match view associations BLAST with PR26 PR26 PR26 Likely 26S proteasome regulatory particle ATPase Rpt3p	protein from Candida albicans SC5314	6.6e-58
BLAST match view associations BLAST with rpt-2 rpt-2 rpt-2	gene from Caenorhabditis elegans	2.1e-45
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Proteasome (Prosome, macropain) 26S subunit, ATPase, 1	protein from Bos taurus	1.2e-44
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Uncharacterized protein	protein from Canis lupus familiaris	1.2e-44
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Homo sapiens	1.2e-44
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Homo sapiens	1.2e-44
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Uncharacterized protein	protein from Sus scrofa	1.2e-44
BLAST match view associations BLAST with Psmc1 Psmc1 Psmc1 protease (prosome, macropain) 26S subunit, ATPase 1	protein from Mus musculus	1.2e-44
BLAST match view associations BLAST with Psmc1 Psmc1 Psmc1 proteasome (prosome, macropain) 26S subunit, ATPase, 1	gene from Rattus norvegicus	1.2e-44
BLAST match view associations BLAST with psmC1 psmC1 psmC1 TAT binding protein alpha	gene from Dictyostelium discoideum	1.5e-44
BLAST match view associations BLAST with psmc1a psmc1a psmc1a proteasome (prosome, macropain) 26S subunit, ATPase, 1a	gene_product from Danio rerio	1.5e-44
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	3.1e-44
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	3.1e-44
BLAST match view associations BLAST with psmc1b psmc1b psmc1b proteasome (prosome, macropain) 26S subunit, ATPase, 1b	gene_product from Danio rerio	3.1e-44
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	1.3e-43
BLAST match view associations BLAST with Rpt2 Rpt2 Rpt2 Regulatory particle triple-A ATPase 2	protein from Drosophila melanogaster	2.2e-43
BLAST match view associations BLAST with RPT2a RPT2a RPT2a regulatory particle AAA-ATPase 2A	protein from Arabidopsis thaliana	9.3e-43
BLAST match view associations BLAST with RPT2b RPT2b RPT2b regulatory particle AAA-ATPase 2b	protein from Arabidopsis thaliana	2.5e-42
BLAST match view associations BLAST with PF10_0081 PF10_0081 PF10_0081 26S proteasome regulatory subunit 4, putative	gene from Plasmodium falciparum	3.2e-42
BLAST match view associations BLAST with PF10_0081 PF10_0081 PF10_0081 26S proteasome regulatory subunit 4, putative	protein from Plasmodium falciparum 3D7	3.2e-42
BLAST match view associations BLAST with RPT2 RPT2 RPT2 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	1.8e-39
BLAST match view associations BLAST with psmC3 psmC3 psmC3 26S proteasome ATPase 3 subunit	gene from Dictyostelium discoideum	7.8e-39
BLAST match view associations BLAST with C10G11.8 C10G11.8 C10G11.8	gene from Caenorhabditis elegans	7.8e-39
BLAST match view associations BLAST with PF11_0314 PF11_0314 PF11_0314 26S protease subunit regulatory subunit 6a, putative	gene from Plasmodium falciparum	1.6e-38
BLAST match view associations BLAST with PF11_0314 PF11_0314 PF11_0314 26S protease subunit regulatory subunit 6a, putative	protein from Plasmodium falciparum 3D7	1.6e-38
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 Uncharacterized protein	protein from Gallus gallus	2.1e-38
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 Uncharacterized protein	protein from Gallus gallus	2.1e-38
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 Uncharacterized protein	protein from Bos taurus	2.1e-38
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 Uncharacterized protein	protein from Canis lupus familiaris	2.1e-38
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 26S protease regulatory subunit 6A	protein from Homo sapiens	2.1e-38
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 26S protease regulatory subunit 6A	protein from Homo sapiens	2.1e-38
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 Uncharacterized protein	protein from Sus scrofa	2.1e-38
BLAST match view associations BLAST with pan pan pan Proteasome-activating nucleotidase	protein from Methanocaldococcus jannaschii DSM 2661	2.1e-38
BLAST match view associations BLAST with Psmc3 Psmc3 Psmc3 proteasome (prosome, macropain) 26S subunit, ATPase 3	protein from Mus musculus	2.1e-38
BLAST match view associations BLAST with Psmc3 Psmc3 Psmc3 proteasome (prosome, macropain) 26S subunit, ATPase 3	gene from Rattus norvegicus	2.1e-38
BLAST match view associations BLAST with Psmc3 Psmc3 Psmc3 Proteasome (Prosome, macropain) 26S subunit, ATPase 3, isoform CRA_a	protein from Rattus norvegicus	2.1e-38
BLAST match view associations BLAST with RPT5A RPT5A RPT5A regulatory particle triple-A ATPase 5A	protein from Arabidopsis thaliana	3.4e-38
BLAST match view associations BLAST with rpt-4 rpt-4 rpt-4	gene from Caenorhabditis elegans	4.3e-38
BLAST match view associations BLAST with rpt-4 rpt-4 rpt-4 Probable 26S protease regulatory subunit 10B	protein from Caenorhabditis elegans	4.3e-38
BLAST match view associations BLAST with psmc3-b psmc3-b psmc3-b 26S protease regulatory subunit 6A-B	protein from Xenopus laevis	5.5e-38
BLAST match view associations BLAST with psmc3 psmc3 psmc3 proteasome (prosome, macropain) 26S subunit, ATPase, 3	gene_product from Danio rerio	7.0e-38
BLAST match view associations BLAST with AT1G45000 AT1G45000 AT1G45000	protein from Arabidopsis thaliana	1.5e-37
BLAST match view associations BLAST with RPT2 RPT2 RPT2	gene_product from Candida albicans	1.9e-37
BLAST match view associations BLAST with RPT5B RPT5B RPT5B 26S proteasome AAA-ATPase subunit RPT5B	protein from Arabidopsis thaliana	1.9e-37
BLAST match view associations BLAST with LOC100687152 LOC100687152 LOC100687152 Uncharacterized protein	protein from Canis lupus familiaris	2.4e-37
BLAST match view associations BLAST with rpt-6 rpt-6 rpt-6	gene from Caenorhabditis elegans	3.0e-37
BLAST match view associations BLAST with Rpt6 Rpt6 Rpt6 Regulatory particle triple-A ATPase 6	protein from Drosophila melanogaster	8.0e-37
BLAST match view associations BLAST with rpt-5 rpt-5 rpt-5	gene from Caenorhabditis elegans	8.0e-37
BLAST match view associations BLAST with rpt-5 rpt-5 rpt-5 Protein RPT-5	protein from Caenorhabditis elegans	8.0e-37
BLAST match view associations BLAST with Rpt4 Rpt4 Rpt4 Regulatory particle triple-A ATPase 4	protein from Drosophila melanogaster	1.0e-36
BLAST match view associations BLAST with RPT4A RPT4A RPT4A regulatory particle triple-A ATPase 4A	protein from Arabidopsis thaliana	1.0e-36
BLAST match view associations BLAST with psmC6 psmC6 psmC6 26S protease regulatory subunit S10B	gene from Dictyostelium discoideum	1.3e-36
BLAST match view associations BLAST with Rpt5 Rpt5 Rpt5 Regulatory particle triple-A ATPase 5	protein from Drosophila melanogaster	1.3e-36
BLAST match view associations BLAST with Rpt4R Rpt4R Rpt4R Regulatory particle triple-A ATPase 4-related	protein from Drosophila melanogaster	1.7e-36
BLAST match view associations BLAST with RPT5 RPT5 RPT5 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	1.7e-36
BLAST match view associations BLAST with Rpt1 Rpt1 Rpt1 Regulatory particle triple-A ATPase 1	protein from Drosophila melanogaster	2.1e-36
BLAST match view associations BLAST with F56F11.4 F56F11.4 F56F11.4	gene from Caenorhabditis elegans	2.1e-36
BLAST match view associations BLAST with OsRPT4 OsRPT4 OsRPT4 26S proteasome regulatory particle triple-A ATPase subunit4	protein from Oryza sativa Japonica Group	3.5e-36
BLAST match view associations BLAST with RPT6 RPT6 RPT6	gene_product from Candida albicans	5.7e-36
BLAST match view associations BLAST with RPT4 RPT4 RPT4 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	5.7e-36
BLAST match view associations BLAST with Rpt6R Rpt6R Rpt6R Regulatory particle triple-A ATPase 6-related	protein from Drosophila melanogaster	7.2e-36
BLAST match view associations BLAST with PFL2345c PFL2345c PFL2345c tat-binding protein homolog	gene from Plasmodium falciparum	7.2e-36
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 Uncharacterized protein	protein from Gallus gallus	7.2e-36
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Bos taurus	7.2e-36
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Homo sapiens	7.2e-36
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Sus scrofa	7.2e-36
BLAST match view associations BLAST with GSTENG00035021001 GSTENG00035021001 GSTENG00035021001 Chromosome 2 SCAF15106, whole genome shotgun sequence.	protein from Tetraodon nigroviridis	7.2e-36
BLAST match view associations BLAST with Q6AZU7 Q6AZU7 Q6AZU7 Putative uncharacterized protein	protein from Xenopus laevis	7.2e-36
BLAST match view associations BLAST with psmc5 psmc5 psmc5 Putative uncharacterized protein MGC75584	protein from Xenopus (Silurana) tropicalis	7.2e-36
BLAST match view associations BLAST with PFL2345c PFL2345c PFL2345c Tat-binding protein homolog	protein from Plasmodium falciparum 3D7	7.2e-36
BLAST match view associations BLAST with Psmc5 Psmc5 Psmc5 protease (prosome, macropain) 26S subunit, ATPase 5	protein from Mus musculus	7.2e-36
BLAST match view associations BLAST with Psmc5 Psmc5 Psmc5 proteasome (prosome, macropain) 26S subunit, ATPase, 5	gene from Rattus norvegicus	7.2e-36
BLAST match view associations BLAST with RPT6A RPT6A RPT6A regulatory particle triple-A ATPase 6A	protein from Arabidopsis thaliana	7.2e-36
BLAST match view associations BLAST with AT5G20000 AT5G20000 AT5G20000	protein from Arabidopsis thaliana	7.2e-36
BLAST match view associations BLAST with psmc5 psmc5 psmc5 proteasome (prosome, macropain) 26S subunit, ATPase, 5	gene_product from Danio rerio	7.2e-36
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030960
        (168 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2161258 - symbol:RPT3 "regulatory particle tri...   831  6.4e-83   1
DICTYBASE|DDB_G0289003 - symbol:psmC4 "HIV TAT binding-pr...   738  4.6e-73   1
FB|FBgn0028686 - symbol:Rpt3 "Regulatory particle triple-...   736  7.5e-73   1
UNIPROTKB|F1MG70 - symbol:PSMC4 "26S protease regulatory ...   718  6.1e-71   1
UNIPROTKB|Q3T030 - symbol:PSMC4 "26S protease regulatory ...   718  6.1e-71   1
UNIPROTKB|E2RH48 - symbol:PSMC4 "Uncharacterized protein"...   718  6.1e-71   1
UNIPROTKB|P43686 - symbol:PSMC4 "26S protease regulatory ...   718  6.1e-71   1
UNIPROTKB|Q4R7L3 - symbol:PSMC4 "26S protease regulatory ...   718  6.1e-71   1
MGI|MGI:1346093 - symbol:Psmc4 "proteasome (prosome, macr...   718  6.1e-71   1
RGD|621102 - symbol:Psmc4 "proteasome (prosome, macropain...   718  6.1e-71   1
ZFIN|ZDB-GENE-030131-5083 - symbol:psmc4 "proteasome (pro...   714  1.6e-70   1
WB|WBGene00004503 - symbol:rpt-3 species:6239 "Caenorhabd...   707  8.9e-70   1
FB|FBgn0037742 - symbol:Rpt3R "Regulatory particle triple...   690  5.6e-68   1
GENEDB_PFALCIPARUM|PFD0665c - symbol:PFD0665c "26s protea...   676  1.7e-66   1
UNIPROTKB|Q8I1V1 - symbol:PFD0665c "26S proteasome AAA-AT...   676  1.7e-66   1
SGD|S000002802 - symbol:RPT3 "ATPase of the 19S regulator...   600  1.9e-58   1
CGD|CAL0001552 - symbol:PR26 species:5476 "Candida albica...   595  6.6e-58   1
UNIPROTKB|Q5A0L8 - symbol:PR26 "Likely 26S proteasome reg...   595  6.6e-58   1
POMBASE|SPCC576.10c - symbol:rpt3 "19S proteasome regulat...   593  1.1e-57   1
ASPGD|ASPL0000036562 - symbol:AN2904 species:162425 "Emer...   584  9.6e-57   1
UNIPROTKB|F1LZ09 - symbol:F1LZ09 "Uncharacterized protein...   574  1.1e-55   1
WB|WBGene00004502 - symbol:rpt-2 species:6239 "Caenorhabd...   477  2.1e-45   1
UNIPROTKB|A4FUZ3 - symbol:PSMC1 "Proteasome (Prosome, mac...   470  1.2e-44   1
UNIPROTKB|F1PQ40 - symbol:PSMC1 "Uncharacterized protein"...   470  1.2e-44   1
UNIPROTKB|B4DR63 - symbol:PSMC1 "cDNA FLJ58247, highly si...   470  1.2e-44   1
UNIPROTKB|P62191 - symbol:PSMC1 "26S protease regulatory ...   470  1.2e-44   1
UNIPROTKB|F2Z5J1 - symbol:PSMC1 "Uncharacterized protein"...   470  1.2e-44   1
MGI|MGI:106054 - symbol:Psmc1 "protease (prosome, macropa...   470  1.2e-44   1
RGD|621097 - symbol:Psmc1 "proteasome (prosome, macropain...   470  1.2e-44   1
DICTYBASE|DDB_G0270784 - symbol:psmC1 "TAT binding protei...   469  1.5e-44   1
ZFIN|ZDB-GENE-030131-8730 - symbol:psmc1a "proteasome (pr...   469  1.5e-44   1
UNIPROTKB|F1NSP7 - symbol:PSMC1 "26S protease regulatory ...   466  3.1e-44   1
UNIPROTKB|F1NTZ4 - symbol:PSMC1 "26S protease regulatory ...   466  3.1e-44   1
ZFIN|ZDB-GENE-040625-69 - symbol:psmc1b "proteasome (pros...   466  3.1e-44   1
UNIPROTKB|Q90732 - symbol:PSMC1 "26S protease regulatory ...   460  1.3e-43   1
FB|FBgn0015282 - symbol:Rpt2 "Regulatory particle triple-...   458  2.2e-43   1
TAIR|locus:2119926 - symbol:RPT2a "regulatory particle AA...   452  9.3e-43   1
TAIR|locus:2061639 - symbol:RPT2b "regulatory particle AA...   448  2.5e-42   1
GENEDB_PFALCIPARUM|PF10_0081 - symbol:PF10_0081 "26S prot...   447  3.2e-42   1
UNIPROTKB|Q8IJW0 - symbol:PF10_0081 "26S proteasome regul...   447  3.2e-42   1
ASPGD|ASPL0000049719 - symbol:AN2213 species:162425 "Emer...   436  4.6e-41   1
SGD|S000002165 - symbol:RPT2 "ATPase of the 19S regulator...   421  1.8e-39   1
POMBASE|SPBC4.07c - symbol:rpt2 "19S proteasome regulator...   417  4.8e-39   1
DICTYBASE|DDB_G0284415 - symbol:psmC3 "26S proteasome ATP...   415  7.8e-39   1
WB|WBGene00015688 - symbol:C10G11.8 species:6239 "Caenorh...   415  7.8e-39   1
GENEDB_PFALCIPARUM|PF11_0314 - symbol:PF11_0314 "26S prot...   412  1.6e-38   1
UNIPROTKB|Q8II60 - symbol:PF11_0314 "26S protease subunit...   412  1.6e-38   1
UNIPROTKB|F1NDQ1 - symbol:PSMC3 "Uncharacterized protein"...   411  2.1e-38   1
UNIPROTKB|F1P3L9 - symbol:PSMC3 "Uncharacterized protein"...   411  2.1e-38   1
UNIPROTKB|F1MWE0 - symbol:PSMC3 "Uncharacterized protein"...   411  2.1e-38   1
UNIPROTKB|F1PBK7 - symbol:PSMC3 "Uncharacterized protein"...   411  2.1e-38   1
UNIPROTKB|E9PM69 - symbol:PSMC3 "26S protease regulatory ...   411  2.1e-38   1
UNIPROTKB|P17980 - symbol:PSMC3 "26S protease regulatory ...   411  2.1e-38   1
UNIPROTKB|F1SID4 - symbol:PSMC3 "Uncharacterized protein"...   411  2.1e-38   1
UNIPROTKB|Q58576 - symbol:pan "Proteasome-activating nucl...   411  2.1e-38   1
MGI|MGI:1098754 - symbol:Psmc3 "proteasome (prosome, macr...   411  2.1e-38   1
RGD|61905 - symbol:Psmc3 "proteasome (prosome, macropain)...   411  2.1e-38   1
UNIPROTKB|Q6P6U2 - symbol:Psmc3 "26S protease regulatory ...   411  2.1e-38   1
TAIR|locus:2079742 - symbol:RPT5A "regulatory particle tr...   409  3.4e-38   1
WB|WBGene00004504 - symbol:rpt-4 species:6239 "Caenorhabd...   408  4.3e-38   1
UNIPROTKB|O17071 - symbol:rpt-4 "Probable 26S protease re...   408  4.3e-38   1
UNIPROTKB|O42586 - symbol:psmc3-b "26S protease regulator...   407  5.5e-38   1
ZFIN|ZDB-GENE-030131-666 - symbol:psmc3 "proteasome (pros...   406  7.0e-38   1
TAIR|locus:2028200 - symbol:AT1G45000 species:3702 "Arabi...   403  1.5e-37   1
CGD|CAL0005257 - symbol:RPT2 species:5476 "Candida albica...   402  1.9e-37   1
TAIR|locus:2036099 - symbol:RPT5B "26S proteasome AAA-ATP...   402  1.9e-37   1
UNIPROTKB|J9NWA6 - symbol:LOC100687152 "Uncharacterized p...   401  2.4e-37   1
POMBASE|SPBC23G7.12c - symbol:rpt6 "19S proteasome regula...   400  3.0e-37   1
WB|WBGene00004506 - symbol:rpt-6 species:6239 "Caenorhabd...   400  3.0e-37   1
ASPGD|ASPL0000010049 - symbol:AN4236 species:162425 "Emer...   397  6.3e-37   1
FB|FBgn0020369 - symbol:Rpt6 "Regulatory particle triple-...   396  8.0e-37   1
WB|WBGene00004505 - symbol:rpt-5 species:6239 "Caenorhabd...   396  8.0e-37   1
UNIPROTKB|O76371 - symbol:rpt-5 "Protein RPT-5" species:6...   396  8.0e-37   1
FB|FBgn0028685 - symbol:Rpt4 "Regulatory particle triple-...   395  1.0e-36   1
TAIR|locus:2159996 - symbol:RPT4A "regulatory particle tr...   395  1.0e-36   1
DICTYBASE|DDB_G0284517 - symbol:psmC6 "26S protease regul...   394  1.3e-36   1
FB|FBgn0028684 - symbol:Rpt5 "Regulatory particle triple-...   394  1.3e-36   1
FB|FBgn0036224 - symbol:Rpt4R "Regulatory particle triple...   393  1.7e-36   1
SGD|S000005643 - symbol:RPT5 "ATPase of the 19S regulator...   393  1.7e-36   1
FB|FBgn0028687 - symbol:Rpt1 "Regulatory particle triple-...   392  2.1e-36   1
WB|WBGene00018991 - symbol:F56F11.4 species:6239 "Caenorh...   392  2.1e-36   1
UNIPROTKB|Q9FXT8 - symbol:OsRPT4 "Os02g0199900 protein" s...   390  3.5e-36   1
ASPGD|ASPL0000064945 - symbol:AN6988 species:162425 "Emer...   389  4.4e-36   1
CGD|CAL0006022 - symbol:RPT6 species:5476 "Candida albica...   388  5.7e-36   1
SGD|S000005785 - symbol:RPT4 "ATPase of the 19S regulator...   388  5.7e-36   1
FB|FBgn0039788 - symbol:Rpt6R "Regulatory particle triple...   387  7.2e-36   1
GENEDB_PFALCIPARUM|PFL2345c - symbol:PFL2345c "tat-bindin...   387  7.2e-36   1
UNIPROTKB|F1NU79 - symbol:PSMC5 "Uncharacterized protein"...   387  7.2e-36   1
UNIPROTKB|P62194 - symbol:PSMC5 "26S protease regulatory ...   387  7.2e-36   1
UNIPROTKB|P62195 - symbol:PSMC5 "26S protease regulatory ...   387  7.2e-36   1
UNIPROTKB|P62197 - symbol:PSMC5 "26S protease regulatory ...   387  7.2e-36   1
UNIPROTKB|Q4RG45 - symbol:GSTENG00035021001 "Chromosome 2...   387  7.2e-36   1
UNIPROTKB|Q6AZU7 - symbol:Q6AZU7 "Putative uncharacterize...   387  7.2e-36   1
UNIPROTKB|Q6P380 - symbol:psmc5 "Putative uncharacterized...   387  7.2e-36   1
UNIPROTKB|Q8I4U5 - symbol:PFL2345c "Tat-binding protein h...   387  7.2e-36   1
MGI|MGI:105047 - symbol:Psmc5 "protease (prosome, macropa...   387  7.2e-36   1
RGD|708376 - symbol:Psmc5 "proteasome (prosome, macropain...   387  7.2e-36   1
TAIR|locus:2147670 - symbol:RPT6A "regulatory particle tr...   387  7.2e-36   1
TAIR|locus:2147685 - symbol:AT5G20000 species:3702 "Arabi...   387  7.2e-36   1
ZFIN|ZDB-GENE-030131-6547 - symbol:psmc5 "proteasome (pro...   387  7.2e-36   1

WARNING:  Descriptions of 544 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2161258 [details] [associations]
            symbol:RPT3 "regulatory particle triple-A ATPase 3"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
            activity" evidence=IGI;ISS] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=RCA;TAS] [GO:0005634 "nucleus" evidence=TAS]
            [GO:0005618 "cell wall" evidence=IDA] [GO:0016020 "membrane"
            evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
            evidence=IDA] [GO:0006094 "gluconeogenesis" evidence=RCA]
            [GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0006888
            "ER to Golgi vesicle-mediated transport" evidence=RCA] [GO:0007010
            "cytoskeleton organization" evidence=RCA] [GO:0009407 "toxin
            catabolic process" evidence=RCA] [GO:0009735 "response to cytokinin
            stimulus" evidence=RCA] [GO:0009853 "photorespiration"
            evidence=RCA] [GO:0010498 "proteasomal protein catabolic process"
            evidence=RCA] [GO:0043090 "amino acid import" evidence=RCA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0048767 "root hair elongation" evidence=RCA]
            [GO:0051788 "response to misfolded protein" evidence=RCA]
            [GO:0080129 "proteasome core complex assembly" evidence=RCA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618
            GO:GO:0016020 EMBL:AB019228 GO:GO:0030163 GO:GO:0000502
            GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 EMBL:AF123392 EMBL:AY070466 EMBL:BT020373
            IPI:IPI00537564 RefSeq:NP_200637.1 UniGene:At.45955
            ProteinModelPortal:Q9SEI4 SMR:Q9SEI4 IntAct:Q9SEI4 STRING:Q9SEI4
            PaxDb:Q9SEI4 PRIDE:Q9SEI4 EnsemblPlants:AT5G58290.1 GeneID:835941
            KEGG:ath:AT5G58290 GeneFarm:1500 TAIR:At5g58290 InParanoid:Q9SEI4
            KO:K03063 OMA:DQTTNVK ProtClustDB:CLSN2686094 Genevestigator:Q9SEI4
            GermOnline:AT5G58290 Uniprot:Q9SEI4
        Length = 408

 Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
 Identities = 167/173 (96%), Positives = 167/173 (96%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV
Sbjct:   236 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 295

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ     MNLSDEVDLEDYVS
Sbjct:   296 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVS 355

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 168
             RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR NVKKPDTDFEFYK
Sbjct:   356 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTDFEFYK 408


>DICTYBASE|DDB_G0289003 [details] [associations]
            symbol:psmC4 "HIV TAT binding-protein-related"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0006972 "hyperosmotic response"
            evidence=IEP] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006508
            "proteolysis" evidence=ISS] [GO:0005838 "proteasome regulatory
            particle" evidence=ISS] [GO:0004175 "endopeptidase activity"
            evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0000502
            "proteasome complex" evidence=IEA] [GO:0044351 "macropinocytosis"
            evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 dictyBase:DDB_G0289003 GO:GO:0005524 GO:GO:0005634
            GO:GO:0045335 GO:GO:0006508 GenomeReviews:CM000154_GR GO:GO:0006972
            GO:GO:0004175 EMBL:AAFI02000129 GO:GO:0030163 GO:GO:0017111
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03063 OMA:DQTTNVK EMBL:L16578
            PIR:JN0611 RefSeq:XP_636422.1 ProteinModelPortal:P34123 SMR:P34123
            STRING:P34123 PRIDE:P34123 EnsemblProtists:DDB0191435
            GeneID:8626913 KEGG:ddi:DDB_G0289003 ProtClustDB:PTZ00454
            GO:GO:0005838 Uniprot:P34123
        Length = 403

 Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
 Identities = 144/172 (83%), Positives = 157/172 (91%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRDVFRLA+EN+PAIIFIDE+DAIAT RFDAQTGADREVQRILMELLNQMDGFD +VNV
Sbjct:   231 LVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILMELLNQMDGFDVSVNV 290

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR DTLDPALLRPGRLDRKIEFPLPDRRQKRL+FQ     MNLSDEVDLEDYVS
Sbjct:   291 KVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDYVS 350

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
             RPDK+S AEI +ICQEAGMHA+RKNRYVILPKDFEKGY+ ++KK   +F FY
Sbjct:   351 RPDKLSGAEIQSICQEAGMHAIRKNRYVILPKDFEKGYKASIKKNTHEFNFY 402


>FB|FBgn0028686 [details] [associations]
            symbol:Rpt3 "Regulatory particle triple-A ATPase 3"
            species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0004175
            "endopeptidase activity" evidence=IDA] [GO:0006508 "proteolysis"
            evidence=ISS;IDA] [GO:0005838 "proteasome regulatory particle"
            evidence=ISS;IDA] [GO:0001673 "male germ cell nucleus"
            evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
            evidence=IMP] InterPro:IPR001270 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PRINTS:PR00300 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 EMBL:AE014298 GO:GO:0006508
            GO:GO:0006974 GO:GO:0016887 GO:GO:0004175 GO:GO:0001673
            GO:GO:0030163 HSSP:Q01853 eggNOG:COG1222 TIGRFAMs:TIGR01242
            GO:GO:0008540 BRENDA:3.4.25.1 KO:K03063 OMA:DQTTNVK
            GeneTree:ENSGT00550000074962 EMBL:AF145306 EMBL:BT046144
            EMBL:FN544098 EMBL:FN544099 EMBL:FN544100 EMBL:FN544101
            EMBL:FN544102 EMBL:FN544103 EMBL:FN544104 EMBL:FN544105
            EMBL:FN544106 EMBL:FN544108 RefSeq:NP_572686.1 UniGene:Dm.8238
            SMR:Q9V405 STRING:Q9V405 EnsemblMetazoa:FBtr0073436 GeneID:32047
            KEGG:dme:Dmel_CG16916 UCSC:CG16916-RA CTD:32047 FlyBase:FBgn0028686
            InParanoid:Q9V405 OrthoDB:EOG4P5HRH GenomeRNAi:32047 NextBio:776548
            Uniprot:Q9V405
        Length = 413

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 143/173 (82%), Positives = 159/173 (91%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRDVFRLAKENAPAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFDQT NV
Sbjct:   241 MVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 300

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF-----QMNLSDEVDLEDYVS 115
             KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF     +MNLS++VDLE++V+
Sbjct:   301 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSEDVDLEEFVA 360

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 168
             RPDKIS A+I AICQEAGMHAVR+NRY++L KDFEKGY+ N+KK + + EFYK
Sbjct:   361 RPDKISGADINAICQEAGMHAVRENRYIVLAKDFEKGYKNNIKKDEQEHEFYK 413


>UNIPROTKB|F1MG70 [details] [associations]
            symbol:PSMC4 "26S protease regulatory subunit 6B"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0001824 "blastocyst
            development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0017111 GO:GO:0001824 TIGRFAMs:TIGR01242 OMA:DQTTNVK
            IPI:IPI00718026 GeneTree:ENSGT00550000074962 EMBL:DAAA02047067
            Ensembl:ENSBTAT00000012391 ArrayExpress:F1MG70 Uniprot:F1MG70
        Length = 417

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 141/173 (81%), Positives = 157/173 (90%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRDVFRLAKENAPAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFDQ VNV
Sbjct:   245 MVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNV 304

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF-----QMNLSDEVDLEDYVS 115
             KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL+F     +MNLS+EVDLEDYV+
Sbjct:   305 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVA 364

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 168
             RPDKIS A+I +ICQE+GM AVR+NRY++L KDFEK Y+T +KK + + EFYK
Sbjct:   365 RPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK 417


>UNIPROTKB|Q3T030 [details] [associations]
            symbol:PSMC4 "26S protease regulatory subunit 6B"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=IEA] [GO:0001824 "blastocyst
            development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0017111 HSSP:Q9WZ49 GO:GO:0001824 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 KO:K03063 EMBL:BC102595 IPI:IPI00718026
            RefSeq:NP_001030255.1 UniGene:Bt.48909 ProteinModelPortal:Q3T030
            SMR:Q3T030 STRING:Q3T030 PRIDE:Q3T030 GeneID:510029 KEGG:bta:510029
            CTD:5704 InParanoid:Q3T030 OrthoDB:EOG4KD6M4 NextBio:20869245
            ArrayExpress:Q3T030 Uniprot:Q3T030
        Length = 418

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 141/173 (81%), Positives = 157/173 (90%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRDVFRLAKENAPAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFDQ VNV
Sbjct:   246 MVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNV 305

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF-----QMNLSDEVDLEDYVS 115
             KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL+F     +MNLS+EVDLEDYV+
Sbjct:   306 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVA 365

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 168
             RPDKIS A+I +ICQE+GM AVR+NRY++L KDFEK Y+T +KK + + EFYK
Sbjct:   366 RPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK 418


>UNIPROTKB|E2RH48 [details] [associations]
            symbol:PSMC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0022624 "proteasome accessory complex"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0001824 "blastocyst development"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0017111 GO:GO:0001824 TIGRFAMs:TIGR01242 KO:K03063
            OMA:DQTTNVK GeneTree:ENSGT00550000074962 EMBL:AAEX03000950
            RefSeq:XP_003638879.1 ProteinModelPortal:E2RH48 SMR:E2RH48
            PRIDE:E2RH48 Ensembl:ENSCAFT00000008685 GeneID:100855613
            KEGG:cfa:100855613 NextBio:20852115 Uniprot:E2RH48
        Length = 418

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 141/173 (81%), Positives = 157/173 (90%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRDVFRLAKENAPAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFDQ VNV
Sbjct:   246 MVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNV 305

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF-----QMNLSDEVDLEDYVS 115
             KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL+F     +MNLS+EVDLEDYV+
Sbjct:   306 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVA 365

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 168
             RPDKIS A+I +ICQE+GM AVR+NRY++L KDFEK Y+T +KK + + EFYK
Sbjct:   366 RPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK 418


>UNIPROTKB|P43686 [details] [associations]
            symbol:PSMC4 "26S protease regulatory subunit 6B"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0001824 "blastocyst development" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0000502 "proteasome complex"
            evidence=TAS] [GO:0006508 "proteolysis" evidence=TAS] [GO:0016887
            "ATPase activity" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
            [GO:0006521 "regulation of cellular amino acid metabolic process"
            evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
            [GO:0006977 "DNA damage response, signal transduction by p53 class
            mediator resulting in cell cycle arrest" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] [GO:0016032 "viral reproduction"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
            "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
            [GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
            [GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
            [GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
            "M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
            "mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
            and presentation of peptide antigen via MHC class I" evidence=TAS]
            [GO:0002479 "antigen processing and presentation of exogenous
            peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0006200 "ATP catabolic process" evidence=TAS]
            Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
            Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005829 GO:GO:0005739 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
            GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
            GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
            GO:GO:0042981 GO:GO:0000082 GO:GO:0016887 GO:GO:0051436
            GO:GO:0000216 GO:GO:0000209 GO:GO:0000084 GO:GO:0031145
            GO:GO:0051437 GO:GO:0006521 GO:GO:0001824 Reactome:REACT_383
            EMBL:AC007842 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK CTD:5704
            OrthoDB:EOG4KD6M4 EMBL:AF038965 EMBL:U27515 EMBL:AF020736
            EMBL:BT007232 EMBL:BC000343 EMBL:BC010396 EMBL:BC014488
            IPI:IPI00020042 IPI:IPI00216770 RefSeq:NP_006494.1
            RefSeq:NP_694546.1 UniGene:Hs.211594 PDB:2DVW PDBsum:2DVW
            ProteinModelPortal:P43686 SMR:P43686 DIP:DIP-29274N IntAct:P43686
            MINT:MINT-5004247 STRING:P43686 PhosphoSite:P43686 DMDM:20532409
            OGP:P43686 PaxDb:P43686 PRIDE:P43686 DNASU:5704
            Ensembl:ENST00000157812 Ensembl:ENST00000455878 GeneID:5704
            KEGG:hsa:5704 UCSC:uc002omq.3 UCSC:uc002omr.3 GeneCards:GC19P040477
            HGNC:HGNC:9551 HPA:HPA002044 HPA:HPA005471 MIM:602707
            neXtProt:NX_P43686 PharmGKB:PA33896 InParanoid:P43686
            PhylomeDB:P43686 ChiTaRS:PSMC4 EvolutionaryTrace:P43686
            GenomeRNAi:5704 NextBio:22160 ArrayExpress:P43686 Bgee:P43686
            CleanEx:HS_PSMC4 Genevestigator:P43686 GermOnline:ENSG00000013275
            Uniprot:P43686
        Length = 418

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 141/173 (81%), Positives = 157/173 (90%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRDVFRLAKENAPAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFDQ VNV
Sbjct:   246 MVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNV 305

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF-----QMNLSDEVDLEDYVS 115
             KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL+F     +MNLS+EVDLEDYV+
Sbjct:   306 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVA 365

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 168
             RPDKIS A+I +ICQE+GM AVR+NRY++L KDFEK Y+T +KK + + EFYK
Sbjct:   366 RPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK 418


>UNIPROTKB|Q4R7L3 [details] [associations]
            symbol:PSMC4 "26S protease regulatory subunit 6B"
            species:9541 "Macaca fascicularis" [GO:0022624 "proteasome
            accessory complex" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 EMBL:AB168803
            ProteinModelPortal:Q4R7L3 SMR:Q4R7L3 PRIDE:Q4R7L3 Uniprot:Q4R7L3
        Length = 418

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 141/173 (81%), Positives = 157/173 (90%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRDVFRLAKENAPAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFDQ VNV
Sbjct:   246 MVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNV 305

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF-----QMNLSDEVDLEDYVS 115
             KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL+F     +MNLS+EVDLEDYV+
Sbjct:   306 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVA 365

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 168
             RPDKIS A+I +ICQE+GM AVR+NRY++L KDFEK Y+T +KK + + EFYK
Sbjct:   366 RPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK 418


>MGI|MGI:1346093 [details] [associations]
            symbol:Psmc4 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 4" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0001824 "blastocyst development" evidence=IMP]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1346093
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0017111 GO:GO:0001824 EMBL:CH466593 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK CTD:5704
            OrthoDB:EOG4KD6M4 GeneTree:ENSGT00550000074962 EMBL:L76223
            EMBL:AB040869 EMBL:AK077507 EMBL:AK153991 EMBL:AK160718
            EMBL:AK167041 EMBL:BC012708 IPI:IPI00108895 RefSeq:NP_036004.2
            UniGene:Mm.29582 PDB:3AJI PDBsum:3AJI ProteinModelPortal:P54775
            SMR:P54775 IntAct:P54775 STRING:P54775 PhosphoSite:P54775
            REPRODUCTION-2DPAGE:P54775 PaxDb:P54775 PRIDE:P54775
            Ensembl:ENSMUST00000032824 GeneID:23996 KEGG:mmu:23996
            InParanoid:Q6ZWN9 EvolutionaryTrace:P54775 NextBio:303909
            Bgee:P54775 Genevestigator:P54775 GermOnline:ENSMUSG00000030603
            Uniprot:P54775
        Length = 418

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 141/173 (81%), Positives = 157/173 (90%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRDVFRLAKENAPAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFDQ VNV
Sbjct:   246 MVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNV 305

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF-----QMNLSDEVDLEDYVS 115
             KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL+F     +MNLS+EVDLEDYV+
Sbjct:   306 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVA 365

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 168
             RPDKIS A+I +ICQE+GM AVR+NRY++L KDFEK Y+T +KK + + EFYK
Sbjct:   366 RPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK 418


>RGD|621102 [details] [associations]
            symbol:Psmc4 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 4" species:10116 "Rattus norvegicus" [GO:0001824
            "blastocyst development" evidence=IEA;ISO] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion"
            evidence=IEA;ISO] [GO:0006200 "ATP catabolic process" evidence=TAS]
            [GO:0016887 "ATPase activity" evidence=TAS] [GO:0022624 "proteasome
            accessory complex" evidence=ISO;ISS] [GO:0030163 "protein catabolic
            process" evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            RGD:621102 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
            GO:GO:0030163 GO:GO:0001824 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03063
            OMA:DQTTNVK CTD:5704 OrthoDB:EOG4KD6M4 GeneTree:ENSGT00550000074962
            EMBL:D50695 EMBL:BC063145 IPI:IPI00210158 RefSeq:NP_476463.1
            UniGene:Rn.11341 PDB:2DWZ PDBsum:2DWZ ProteinModelPortal:Q63570
            SMR:Q63570 IntAct:Q63570 STRING:Q63570 PhosphoSite:Q63570
            PRIDE:Q63570 Ensembl:ENSRNOT00000025819 GeneID:117262
            KEGG:rno:117262 UCSC:RGD:621102 InParanoid:Q63570
            EvolutionaryTrace:Q63570 NextBio:620144 Genevestigator:Q63570
            GermOnline:ENSRNOG00000018994 Uniprot:Q63570
        Length = 418

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 141/173 (81%), Positives = 157/173 (90%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRDVFRLAKENAPAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFDQ VNV
Sbjct:   246 MVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNV 305

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF-----QMNLSDEVDLEDYVS 115
             KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL+F     +MNLS+EVDLEDYV+
Sbjct:   306 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVA 365

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 168
             RPDKIS A+I +ICQE+GM AVR+NRY++L KDFEK Y+T +KK + + EFYK
Sbjct:   366 RPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK 418


>ZFIN|ZDB-GENE-030131-5083 [details] [associations]
            symbol:psmc4 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 4" species:7955 "Danio rerio" [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005937
            Pfam:PF00004 SMART:SM00382 ZFIN:ZDB-GENE-030131-5083 GO:GO:0005524
            GO:GO:0005737 GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 EMBL:BC055215 IPI:IPI00509630
            UniGene:Dr.76514 ProteinModelPortal:Q7SXX0 SMR:Q7SXX0 STRING:Q7SXX0
            PRIDE:Q7SXX0 InParanoid:Q7SXX0 ArrayExpress:Q7SXX0 Bgee:Q7SXX0
            Uniprot:Q7SXX0
        Length = 418

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 142/173 (82%), Positives = 156/173 (90%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRDVFRLAKENAPAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFDQ VNV
Sbjct:   246 MVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNV 305

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF-----QMNLSDEVDLEDYVS 115
             KVIMATNRADTLDPALL PGRLDRKIEFPLPDRRQKRLVF     +MNLS+EVDLEDYV+
Sbjct:   306 KVIMATNRADTLDPALLCPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSEEVDLEDYVA 365

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 168
             RPDKIS A+I +ICQEAGM AVR+NRY++L KDFEK Y+T +KK + + EFYK
Sbjct:   366 RPDKISGADINSICQEAGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK 418


>WB|WBGene00004503 [details] [associations]
            symbol:rpt-3 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
            larval development" evidence=IMP] [GO:0008340 "determination of
            adult lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0002119 GO:GO:0000003
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK
            EMBL:FO081210 PIR:A88485 RefSeq:NP_498429.1
            ProteinModelPortal:P46502 SMR:P46502 DIP:DIP-24412N IntAct:P46502
            MINT:MINT-212949 STRING:P46502 PaxDb:P46502
            EnsemblMetazoa:F23F12.6.1 EnsemblMetazoa:F23F12.6.2 GeneID:175925
            KEGG:cel:CELE_F23F12.6 UCSC:F23F12.6.1 CTD:175925 WormBase:F23F12.6
            GeneTree:ENSGT00550000074962 InParanoid:P46502 NextBio:890338
            Uniprot:P46502
        Length = 414

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 140/173 (80%), Positives = 154/173 (89%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRDVFRLAKEN+P+IIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFDQ+ NV
Sbjct:   242 MVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNV 301

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF-----QMNLSDEVDLEDYVS 115
             KVIMATNR DTLDPALLRPGRLDRKIEFPLPDRRQKRLVF     +MNLSD+VDLED+V+
Sbjct:   302 KVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDWVA 361

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 168
             RPDKIS A+I +ICQEAGM AVR+NRYV+L KD EK Y+  VKK   DFEFYK
Sbjct:   362 RPDKISGADINSICQEAGMQAVRENRYVVLTKDLEKAYKNVVKKDTNDFEFYK 414


>FB|FBgn0037742 [details] [associations]
            symbol:Rpt3R "Regulatory particle triple-A ATPase 3-related"
            species:7227 "Drosophila melanogaster" [GO:0006508 "proteolysis"
            evidence=ISS] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=ISS] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=NAS]
            [GO:0006974 "response to DNA damage stimulus" evidence=IMP]
            InterPro:IPR001270 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PRINTS:PR00300
            PROSITE:PS00674 SMART:SM00382 EMBL:AE014297 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006200 GO:GO:0006974 GO:GO:0016887
            GO:GO:0030163 TIGRFAMs:TIGR01242 KO:K03063
            GeneTree:ENSGT00550000074962 FlyBase:FBgn0037742 EMBL:BT016035
            RefSeq:NP_649938.2 UniGene:Dm.21651 SMR:Q9VH79 STRING:Q9VH79
            EnsemblMetazoa:FBtr0301536 EnsemblMetazoa:FBtr0332172 GeneID:41190
            KEGG:dme:Dmel_CG9475 UCSC:CG9475-RA CTD:41190 InParanoid:Q9VH79
            OMA:KQSNCLV OrthoDB:EOG49GHZ0 GenomeRNAi:41190 NextBio:822637
            Uniprot:Q9VH79
        Length = 405

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 133/172 (77%), Positives = 154/172 (89%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRD+FRLAK+N+P+IIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFD+T N+
Sbjct:   233 MVRDLFRLAKQNSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDETTNI 292

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF-----QMNLSDEVDLEDYVS 115
             KVIMATNRADTLDPALLRPGRLDRKIE PLPDRRQKRLVF     +MN+ ++VDLED ++
Sbjct:   293 KVIMATNRADTLDPALLRPGRLDRKIELPLPDRRQKRLVFTTITSKMNVGEDVDLEDIIA 352

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
             RPDKIS A+I AICQEAGMHAVR+NRYV+  KDFEKGY+T+V+K +   EFY
Sbjct:   353 RPDKISNADINAICQEAGMHAVRENRYVVNAKDFEKGYKTSVRKDEAQHEFY 404


>GENEDB_PFALCIPARUM|PFD0665c [details] [associations]
            symbol:PFD0665c "26s proteasome aaa-ATPase
            subunit Rpt3, putative" species:5833 "Plasmodium falciparum"
            [GO:0005838 "proteasome regulatory particle" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 GO:GO:0016887 GO:GO:0006511 HSSP:Q01853
            EMBL:AL844503 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03063
            OMA:DQTTNVK ProtClustDB:PTZ00454 GO:GO:0005838
            RefSeq:XP_001351444.1 ProteinModelPortal:Q8I1V1 IntAct:Q8I1V1
            MINT:MINT-1573247 PRIDE:Q8I1V1 EnsemblProtists:PFD0665c:mRNA
            GeneID:812570 KEGG:pfa:PFD0665c EuPathDB:PlasmoDB:PF3D7_0413600
            Uniprot:Q8I1V1
        Length = 392

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 133/172 (77%), Positives = 153/172 (88%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRDVFRLA+EN+P+IIFIDEVDAIAT RFDAQTGADREVQRIL+ELLNQMDGFD++ NV
Sbjct:   219 MVRDVFRLARENSPSIIFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTNV 278

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNRADTLDPALLRPGRLDRKIEFPLPDR+QKRL+FQ     MN+S +V++E +V 
Sbjct:   279 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRKQKRLIFQTIISKMNVSSDVNIESFVV 338

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
             R DKISAA+IAAI QEAGM A+RKNRY+I   DFE+GYRT+V+K   D+EFY
Sbjct:   339 RTDKISAADIAAIAQEAGMQAIRKNRYIITANDFEQGYRTHVRKQLRDYEFY 390


>UNIPROTKB|Q8I1V1 [details] [associations]
            symbol:PFD0665c "26S proteasome AAA-ATPase subunit RPT3,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005838
            "proteasome regulatory particle" evidence=ISS] [GO:0006200 "ATP
            catabolic process" evidence=ISS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0016887
            GO:GO:0006511 HSSP:Q01853 EMBL:AL844503 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK ProtClustDB:PTZ00454
            GO:GO:0005838 RefSeq:XP_001351444.1 ProteinModelPortal:Q8I1V1
            IntAct:Q8I1V1 MINT:MINT-1573247 PRIDE:Q8I1V1
            EnsemblProtists:PFD0665c:mRNA GeneID:812570 KEGG:pfa:PFD0665c
            EuPathDB:PlasmoDB:PF3D7_0413600 Uniprot:Q8I1V1
        Length = 392

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 133/172 (77%), Positives = 153/172 (88%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRDVFRLA+EN+P+IIFIDEVDAIAT RFDAQTGADREVQRIL+ELLNQMDGFD++ NV
Sbjct:   219 MVRDVFRLARENSPSIIFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTNV 278

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNRADTLDPALLRPGRLDRKIEFPLPDR+QKRL+FQ     MN+S +V++E +V 
Sbjct:   279 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRKQKRLIFQTIISKMNVSSDVNIESFVV 338

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
             R DKISAA+IAAI QEAGM A+RKNRY+I   DFE+GYRT+V+K   D+EFY
Sbjct:   339 RTDKISAADIAAIAQEAGMQAIRKNRYIITANDFEQGYRTHVRKQLRDYEFY 390


>SGD|S000002802 [details] [associations]
            symbol:RPT3 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0008540
            "proteasome regulatory particle, base subcomplex" evidence=IDA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IMP]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000502
            "proteasome complex" evidence=IEA] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IMP]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
            "proteasome regulatory particle assembly" evidence=IMP]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            SGD:S000002802 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            EMBL:BK006938 GO:GO:0006511 GO:GO:0017111 GO:GO:0045899 EMBL:U32274
            KO:K07101 RefSeq:NP_010687.3 GeneID:852008 KEGG:sce:YDR399W
            GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03063
            OMA:DQTTNVK GeneTree:ENSGT00550000074962 OrthoDB:EOG46HKKC
            EMBL:X73570 EMBL:U06229 PIR:S69678 RefSeq:NP_010682.3 PDB:2DZN
            PDB:2DZO PDBsum:2DZN PDBsum:2DZO ProteinModelPortal:P33298
            SMR:P33298 DIP:DIP-1587N IntAct:P33298 MINT:MINT-383865
            STRING:P33298 PaxDb:P33298 PeptideAtlas:P33298 EnsemblFungi:YDR394W
            GeneID:852003 KEGG:sce:YDR394W EvolutionaryTrace:P33298
            NextBio:970192 Genevestigator:P33298 GermOnline:YDR394W
            Uniprot:P33298
        Length = 428

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 126/176 (71%), Positives = 145/176 (82%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRDVFRLA+ENAP+IIFIDEVD+IAT RFDAQTG+DREVQRIL+ELL QMDGFDQ+ NV
Sbjct:   253 MVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNV 312

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFP-LPDRRQKRLVF-----QMNLSDEVDLEDYV 114
             KVIMATNRADTLDPALLRPGRLDRKIEFP L DRR++RL+F     +M+L+ E DL+  +
Sbjct:   313 KVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLI 372

Query:   115 SRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDT-D-FEFYK 168
              R D +S A IAAI QEAG+ AVRKNRYVIL  D E+ Y T VK  +T D F+FYK
Sbjct:   373 IRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFDFYK 428


>CGD|CAL0001552 [details] [associations]
            symbol:PR26 species:5476 "Candida albicans" [GO:0005838
            "proteasome regulatory particle" evidence=ISS] [GO:0005829
            "cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] [GO:0070682 "proteasome
            regulatory particle assembly" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            CGD:CAL0001552 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 EMBL:AACQ01000088 EMBL:AACQ01000087 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03063 GO:GO:0005838 RefSeq:XP_715269.1
            RefSeq:XP_715334.1 ProteinModelPortal:Q5A0L8 SMR:Q5A0L8
            STRING:Q5A0L8 GeneID:3642981 GeneID:3643038 KEGG:cal:CaO19.13215
            KEGG:cal:CaO19.5793 Uniprot:Q5A0L8
        Length = 411

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 125/176 (71%), Positives = 144/176 (81%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRDVFRLA+EN+PAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFDQT  V
Sbjct:   236 MVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTSTV 295

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFP-LPDRRQKRLVF-----QMNLSDEVDLEDYV 114
             KVIMATNRADTLDPALLRPGRLDRKIEFP L DRR++RL+F     +M+L+ E DL+  +
Sbjct:   296 KVIMATNRADTLDPALLRPGRLDRKIEFPSLKDRRERRLIFSTIASKMSLAPEADLDSLI 355

Query:   115 SRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK-PDTD-FEFYK 168
              R D +S A IAAI QEAG+ AVRKNRY+IL  D E+ Y + VK   + D F+FYK
Sbjct:   356 IRNDPLSGAVIAAIMQEAGLRAVRKNRYMILQSDLEEAYTSQVKTGTEHDKFDFYK 411


>UNIPROTKB|Q5A0L8 [details] [associations]
            symbol:PR26 "Likely 26S proteasome regulatory particle
            ATPase Rpt3p" species:237561 "Candida albicans SC5314" [GO:0005838
            "proteasome regulatory particle" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 CGD:CAL0001552
            GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            EMBL:AACQ01000088 EMBL:AACQ01000087 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03063 GO:GO:0005838 RefSeq:XP_715269.1
            RefSeq:XP_715334.1 ProteinModelPortal:Q5A0L8 SMR:Q5A0L8
            STRING:Q5A0L8 GeneID:3642981 GeneID:3643038 KEGG:cal:CaO19.13215
            KEGG:cal:CaO19.5793 Uniprot:Q5A0L8
        Length = 411

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 125/176 (71%), Positives = 144/176 (81%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRDVFRLA+EN+PAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFDQT  V
Sbjct:   236 MVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTSTV 295

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFP-LPDRRQKRLVF-----QMNLSDEVDLEDYV 114
             KVIMATNRADTLDPALLRPGRLDRKIEFP L DRR++RL+F     +M+L+ E DL+  +
Sbjct:   296 KVIMATNRADTLDPALLRPGRLDRKIEFPSLKDRRERRLIFSTIASKMSLAPEADLDSLI 355

Query:   115 SRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK-PDTD-FEFYK 168
              R D +S A IAAI QEAG+ AVRKNRY+IL  D E+ Y + VK   + D F+FYK
Sbjct:   356 IRNDPLSGAVIAAIMQEAGLRAVRKNRYMILQSDLEEAYTSQVKTGTEHDKFDFYK 411


>POMBASE|SPCC576.10c [details] [associations]
            symbol:rpt3 "19S proteasome regulatory subunit Rpt3
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
            "ATP binding" evidence=IC] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=ISO] [GO:0008540 "proteasome regulatory particle,
            base subcomplex" evidence=ISO] [GO:0016887 "ATPase activity"
            evidence=ISO] [GO:0004175 "endopeptidase activity" evidence=ISO]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            PomBase:SPCC576.10c GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0016887 GO:GO:0006511
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            GO:GO:0008540 KO:K03063 OMA:DQTTNVK PIR:T41420 RefSeq:NP_588437.1
            ProteinModelPortal:O74894 SMR:O74894 STRING:O74894 PRIDE:O74894
            EnsemblFungi:SPCC576.10c.1 GeneID:2539539 KEGG:spo:SPCC576.10c
            OrthoDB:EOG46HKKC NextBio:20800700 Uniprot:O74894
        Length = 389

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 127/175 (72%), Positives = 141/175 (80%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRDVFR+A+ENAPAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELL QMDGFDQ  NV
Sbjct:   215 MVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADREVQRILIELLTQMDGFDQGANV 274

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFP-LPDRRQKRLVFQ-----MNLSDEVDLEDYV 114
             KVIMATNRADTLDPALLRPGRLDRKIEFP   DRRQ+RLVFQ     M LS EVDL+ ++
Sbjct:   275 KVIMATNRADTLDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFI 334

Query:   115 SRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD-FEFYK 168
              RPD  S A+IAAI Q+AG+ AVRK+R VIL  D E+ Y   VK  D + F FYK
Sbjct:   335 MRPDASSGAQIAAIMQDAGLLAVRKSRGVILQSDIEEAYARAVKPTDMEQFAFYK 389


>ASPGD|ASPL0000036562 [details] [associations]
            symbol:AN2904 species:162425 "Emericella nidulans"
            [GO:0070682 "proteasome regulatory particle assembly" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 EMBL:BN001306 GO:GO:0030163 GO:GO:0000502
            GO:GO:0017111 TIGRFAMs:TIGR01242 EnsemblFungi:CADANIAT00010185
            OMA:EDAYSAQ Uniprot:C8VJ79
        Length = 422

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 123/176 (69%), Positives = 142/176 (80%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRDVFR+A+EN+PAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGF+QT NV
Sbjct:   247 MVRDVFRMARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFEQTSNV 306

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFP-LPDRRQKRLVF-----QMNLSDEVDLEDYV 114
             KVIMATNRADTLDPALLRPGRLDRKIEFP L DRR++RL+F     +M+LS EVDL+  +
Sbjct:   307 KVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFSTIASKMSLSPEVDLDSLI 366

Query:   115 SRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK-PDTD-FEFYK 168
              R + +S A IAAI QEAG+ AVRKNRY I+  D E  Y   VK   + D  EFY+
Sbjct:   367 VRNEPLSGAVIAAIMQEAGLRAVRKNRYNIIQSDLEDAYSAQVKTGQEADRLEFYR 422


>UNIPROTKB|F1LZ09 [details] [associations]
            symbol:F1LZ09 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR005937 Pfam:PF00004 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 IPI:IPI00780208
            Ensembl:ENSRNOT00000039743 Uniprot:F1LZ09
        Length = 369

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 115/164 (70%), Positives = 136/164 (82%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++ DVF L KENAPAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFDQ ++V
Sbjct:   195 IIWDVFHLDKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNISV 254

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF-----QMNLSDEVDLEDYVS 115
             K IMATNR DTLDP LLRPG LD KIEFPLPD R KRL+F     +MNLS+EV++EDYV+
Sbjct:   255 KAIMATNRKDTLDPTLLRPGHLDHKIEFPLPDHR-KRLIFSTITSKMNLSEEVNVEDYVA 313

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 159
              PDKIS A+I +ICQE+GM  V +N ++ L KDF+K Y+T +KK
Sbjct:   314 CPDKISGADINSICQESGMLTVCENCHIFLAKDFKKAYKTVIKK 357


>WB|WBGene00004502 [details] [associations]
            symbol:rpt-2 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0009792 "embryo development
            ending in birth or egg hatching" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] [GO:0031625 "ubiquitin protein ligase
            binding" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0000003 GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER EMBL:FO080494 PIR:T31800
            RefSeq:NP_504558.1 ProteinModelPortal:O16368 SMR:O16368
            IntAct:O16368 MINT:MINT-210699 STRING:O16368 PaxDb:O16368
            PRIDE:O16368 EnsemblMetazoa:F29G9.5.1 EnsemblMetazoa:F29G9.5.2
            GeneID:178988 KEGG:cel:CELE_F29G9.5 UCSC:F29G9.5 CTD:178988
            WormBase:F29G9.5 GeneTree:ENSGT00550000074818 InParanoid:O16368
            NextBio:903424 Uniprot:O16368
        Length = 443

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 92/175 (52%), Positives = 132/175 (75%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++FR+A+ENAP+I+FIDE+DA+ T R+D+ +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   269 MVRELFRVAEENAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 328

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KV+MATNR ++LDPAL+RPGR+DRKIEFPLPD + KR +FQ     M L  EV+LE++++
Sbjct:   329 KVLMATNRIESLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTLGKEVNLEEFIT 388

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV---KKPDTDFEFY 167
               D++S A+I A+C EAG+ A+R+ R  +  +DF+K  + NV   KK     E Y
Sbjct:   389 AKDELSGADIKAMCTEAGLLALRERRMRVTMEDFQKS-KENVLYRKKEGAPEELY 442


>UNIPROTKB|A4FUZ3 [details] [associations]
            symbol:PSMC1 "Proteasome (Prosome, macropain) 26S subunit,
            ATPase, 1" species:9913 "Bos taurus" [GO:0022624 "proteasome
            accessory complex" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
            OMA:FIRNQER GeneTree:ENSGT00550000074818 OrthoDB:EOG4D7Z5Q
            EMBL:DAAA02030032 EMBL:BC123487 IPI:IPI00695877 UniGene:Bt.12340
            SMR:A4FUZ3 STRING:A4FUZ3 Ensembl:ENSBTAT00000007135
            InParanoid:A4FUZ3 Uniprot:A4FUZ3
        Length = 440

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 89/162 (54%), Positives = 126/162 (77%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR++FR+A+E+AP+I+FIDE+DAI T R+D+ +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 325

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR +TLDPAL+RPGR+DRKIEFPLPD + K+ +FQ     M L+D+V L+D + 
Sbjct:   326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIM 385

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157
               D +S A+I AIC EAG+ A+R+ R  +  +DF+K  + NV
Sbjct:   386 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS-KENV 426


>UNIPROTKB|F1PQ40 [details] [associations]
            symbol:PSMC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 KO:K03062 OMA:FIRNQER
            GeneTree:ENSGT00550000074818 CTD:5700 EMBL:AAEX03005924
            RefSeq:NP_001238880.1 ProteinModelPortal:F1PQ40
            Ensembl:ENSCAFT00000027737 GeneID:100688636 KEGG:cfa:100688636
            Uniprot:F1PQ40
        Length = 440

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 89/162 (54%), Positives = 126/162 (77%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR++FR+A+E+AP+I+FIDE+DAI T R+D+ +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 325

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR +TLDPAL+RPGR+DRKIEFPLPD + K+ +FQ     M L+D+V L+D + 
Sbjct:   326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIM 385

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157
               D +S A+I AIC EAG+ A+R+ R  +  +DF+K  + NV
Sbjct:   386 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS-KENV 426


>UNIPROTKB|B4DR63 [details] [associations]
            symbol:PSMC1 "cDNA FLJ58247, highly similar to 26S protease
            regulatory subunit 4" species:9606 "Homo sapiens" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008233
            "peptidase activity" evidence=IEA] [GO:0022624 "proteasome
            accessory complex" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0006508 GO:GO:0030163 GO:GO:0017111 GO:GO:0008233
            EMBL:AL161662 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            UniGene:Hs.356654 HGNC:HGNC:9547 EMBL:AL355074 EMBL:AK299121
            IPI:IPI01015427 SMR:B4DR63 STRING:B4DR63 Ensembl:ENST00000543772
            Uniprot:B4DR63
        Length = 367

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 89/162 (54%), Positives = 126/162 (77%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR++FR+A+E+AP+I+FIDE+DAI T R+D+ +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   193 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 252

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR +TLDPAL+RPGR+DRKIEFPLPD + K+ +FQ     M L+D+V L+D + 
Sbjct:   253 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIM 312

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157
               D +S A+I AIC EAG+ A+R+ R  +  +DF+K  + NV
Sbjct:   313 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS-KENV 353


>UNIPROTKB|P62191 [details] [associations]
            symbol:PSMC1 "26S protease regulatory subunit 4"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0000502 "proteasome
            complex" evidence=NAS] [GO:0000075 "cell cycle checkpoint"
            evidence=TAS] [GO:0000082 "G1/S transition of mitotic cell cycle"
            evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
            evidence=TAS] [GO:0000209 "protein polyubiquitination"
            evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell cycle"
            evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
            [GO:0002474 "antigen processing and presentation of peptide antigen
            via MHC class I" evidence=TAS] [GO:0002479 "antigen processing and
            presentation of exogenous peptide antigen via MHC class I,
            TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
            "regulation of cellular amino acid metabolic process" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0016032 "viral reproduction"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
            "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_13505
            Reactome:REACT_578 Reactome:REACT_71 Reactome:REACT_21257
            Reactome:REACT_6850 Reactome:REACT_111217 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
            GO:GO:0005524 Reactome:REACT_111102 Reactome:REACT_116125
            Reactome:REACT_6900 GO:GO:0006915 GO:GO:0010467 GO:GO:0016071
            Reactome:REACT_115566 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
            Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981 GO:GO:0000082
            GO:GO:0016887 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
            GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
            Reactome:REACT_383 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062
            OMA:FIRNQER CTD:5700 OrthoDB:EOG4D7Z5Q EMBL:L02426 EMBL:CR457044
            EMBL:BC000512 EMBL:BC016368 EMBL:BC073818 IPI:IPI00011126
            PIR:A44468 RefSeq:NP_002793.2 UniGene:Hs.356654
            ProteinModelPortal:P62191 SMR:P62191 IntAct:P62191
            MINT:MINT-1141832 STRING:P62191 PhosphoSite:P62191 DMDM:49065817
            PaxDb:P62191 PeptideAtlas:P62191 PRIDE:P62191 DNASU:5700
            Ensembl:ENST00000261303 GeneID:5700 KEGG:hsa:5700 UCSC:uc001xyf.3
            GeneCards:GC14P090722 H-InvDB:HIX0030744 HGNC:HGNC:9547
            HPA:HPA000872 MIM:602706 neXtProt:NX_P62191 PharmGKB:PA33892
            InParanoid:P62191 PhylomeDB:P62191 GenomeRNAi:5700 NextBio:22146
            ArrayExpress:P62191 Bgee:P62191 CleanEx:HS_PSMC1
            Genevestigator:P62191 GermOnline:ENSG00000100764 Uniprot:P62191
        Length = 440

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 89/162 (54%), Positives = 126/162 (77%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR++FR+A+E+AP+I+FIDE+DAI T R+D+ +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 325

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR +TLDPAL+RPGR+DRKIEFPLPD + K+ +FQ     M L+D+V L+D + 
Sbjct:   326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIM 385

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157
               D +S A+I AIC EAG+ A+R+ R  +  +DF+K  + NV
Sbjct:   386 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS-KENV 426


>UNIPROTKB|F2Z5J1 [details] [associations]
            symbol:PSMC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 KO:K03062 OMA:FIRNQER
            GeneTree:ENSGT00550000074818 CTD:5700 EMBL:CT737375
            RefSeq:NP_001231080.1 UniGene:Ssc.1911 ProteinModelPortal:F2Z5J1
            SMR:F2Z5J1 PRIDE:F2Z5J1 Ensembl:ENSSSCT00000002703 GeneID:100155274
            KEGG:ssc:100155274 Uniprot:F2Z5J1
        Length = 440

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 89/162 (54%), Positives = 126/162 (77%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR++FR+A+E+AP+I+FIDE+DAI T R+D+ +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 325

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR +TLDPAL+RPGR+DRKIEFPLPD + K+ +FQ     M L+D+V L+D + 
Sbjct:   326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIM 385

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157
               D +S A+I AIC EAG+ A+R+ R  +  +DF+K  + NV
Sbjct:   386 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS-KENV 426


>MGI|MGI:106054 [details] [associations]
            symbol:Psmc1 "protease (prosome, macropain) 26S subunit,
            ATPase 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017025
            "TBP-class protein binding" evidence=ISO] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:106054
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER CTD:5700
            OrthoDB:EOG4D7Z5Q EMBL:U39302 EMBL:BC003860 IPI:IPI00133428
            RefSeq:NP_032973.1 UniGene:Mm.157105 ProteinModelPortal:P62192
            SMR:P62192 IntAct:P62192 STRING:P62192 PhosphoSite:P62192
            REPRODUCTION-2DPAGE:IPI00133428 PaxDb:P62192 PRIDE:P62192
            Ensembl:ENSMUST00000021595 GeneID:19179 KEGG:mmu:19179
            InParanoid:P62192 NextBio:295866 Bgee:P62192 Genevestigator:P62192
            GermOnline:ENSMUSG00000021178 Uniprot:P62192
        Length = 440

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 89/162 (54%), Positives = 126/162 (77%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR++FR+A+E+AP+I+FIDE+DAI T R+D+ +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 325

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR +TLDPAL+RPGR+DRKIEFPLPD + K+ +FQ     M L+D+V L+D + 
Sbjct:   326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIM 385

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157
               D +S A+I AIC EAG+ A+R+ R  +  +DF+K  + NV
Sbjct:   386 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS-KENV 426


>RGD|621097 [details] [associations]
            symbol:Psmc1 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 1" species:10116 "Rattus norvegicus" [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
            "cytoplasm" evidence=IEA;ISO] [GO:0006200 "ATP catabolic process"
            evidence=TAS] [GO:0008150 "biological_process" evidence=ND]
            [GO:0016887 "ATPase activity" evidence=TAS] [GO:0017025 "TBP-class
            protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
            complex" evidence=ISO;ISS] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            RGD:621097 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
            GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062
            GeneTree:ENSGT00550000074818 CTD:5700 OrthoDB:EOG4D7Z5Q EMBL:D50696
            EMBL:BC063157 IPI:IPI00211733 RefSeq:NP_476464.1 UniGene:Rn.10526
            ProteinModelPortal:P62193 SMR:P62193 IntAct:P62193 STRING:P62193
            PRIDE:P62193 Ensembl:ENSRNOT00000005329 GeneID:117263
            KEGG:rno:117263 UCSC:RGD:621097 InParanoid:P62193 NextBio:620148
            Genevestigator:P62193 GermOnline:ENSRNOG00000003951 Uniprot:P62193
        Length = 440

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 89/162 (54%), Positives = 126/162 (77%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR++FR+A+E+AP+I+FIDE+DAI T R+D+ +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 325

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR +TLDPAL+RPGR+DRKIEFPLPD + K+ +FQ     M L+D+V L+D + 
Sbjct:   326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIM 385

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157
               D +S A+I AIC EAG+ A+R+ R  +  +DF+K  + NV
Sbjct:   386 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS-KENV 426


>DICTYBASE|DDB_G0270784 [details] [associations]
            symbol:psmC1 "TAT binding protein alpha"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0030587 "sorocarp development"
            evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            dictyBase:DDB_G0270784 GO:GO:0005524 GO:GO:0005634
            EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0045335
            GO:GO:0030587 GO:GO:0000910 GO:GO:0030163 GO:GO:0000502
            GO:GO:0017111 HSSP:Q9WZ49 eggNOG:COG1222 TIGRFAMs:TIGR01242
            KO:K03062 OMA:FIRNQER RefSeq:XP_646726.1 ProteinModelPortal:Q55BV5
            STRING:Q55BV5 PRIDE:Q55BV5 EnsemblProtists:DDB0232964
            GeneID:8617698 KEGG:ddi:DDB_G0270784 ProtClustDB:PTZ00361
            Uniprot:Q55BV5
        Length = 439

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 88/156 (56%), Positives = 124/156 (79%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR++FR+A E AP+I+FIDE+DA+ T R+D+Q+G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   265 LVRELFRVADECAPSIVFIDEIDAVGTKRYDSQSGGEREIQRTMLELLNQLDGFDARTDV 324

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR +TLDPAL+RPGR+DRKIEFPLPD + KR +F+     MNLS++V+LE++V 
Sbjct:   325 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDIKTKRKIFEIHTAKMNLSEDVNLEEFVM 384

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
               D +S A+I AIC E+G+ A+R+ R  +   DF+K
Sbjct:   385 SKDDLSGADIKAICTESGLLALRERRMRVTHTDFKK 420


>ZFIN|ZDB-GENE-030131-8730 [details] [associations]
            symbol:psmc1a "proteasome (prosome, macropain) 26S
            subunit, ATPase, 1a" species:7955 "Danio rerio" [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-030131-8730 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 HSSP:P43773
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 KO:K03062 EMBL:BC049471
            IPI:IPI00500900 RefSeq:NP_956327.1 UniGene:Dr.76288
            ProteinModelPortal:Q7ZWD1 STRING:Q7ZWD1 GeneID:336786
            KEGG:dre:336786 CTD:336786 InParanoid:Q7ZWD1 NextBio:20811903
            ArrayExpress:Q7ZWD1 Uniprot:Q7ZWD1
        Length = 440

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 89/162 (54%), Positives = 126/162 (77%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR++FR+A+E+AP+I+FIDE+DAI T R+D+ +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 325

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR +TLDPAL+RPGR+DRKIEFPLPD + KR +FQ     M ++D+V L+D + 
Sbjct:   326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTVADDVTLDDLIL 385

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157
               D +S A+I AIC EAG+ A+R+ R  +  +DF+K  + NV
Sbjct:   386 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS-KENV 426


>UNIPROTKB|F1NSP7 [details] [associations]
            symbol:PSMC1 "26S protease regulatory subunit 4"
            species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:FIRNQER
            GeneTree:ENSGT00550000074818 IPI:IPI00585304 EMBL:AADN02003628
            EMBL:AADN02003629 Ensembl:ENSGALT00000017367 ArrayExpress:F1NSP7
            Uniprot:F1NSP7
        Length = 439

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 88/162 (54%), Positives = 126/162 (77%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR++FR+A+E+AP+I+FIDE+DAI T R+D+ +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   265 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 324

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR +TLDPAL+RPGR+DRKIEFPLPD + K+ +FQ     M L+D+V L++ + 
Sbjct:   325 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIM 384

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157
               D +S A+I AIC EAG+ A+R+ R  +  +DF+K  + NV
Sbjct:   385 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS-KENV 425


>UNIPROTKB|F1NTZ4 [details] [associations]
            symbol:PSMC1 "26S protease regulatory subunit 4"
            species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:FIRNQER
            GeneTree:ENSGT00550000074818 EMBL:AADN02003628 EMBL:AADN02003629
            IPI:IPI00821206 Ensembl:ENSGALT00000037629 ArrayExpress:F1NTZ4
            Uniprot:F1NTZ4
        Length = 438

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 88/162 (54%), Positives = 126/162 (77%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR++FR+A+E+AP+I+FIDE+DAI T R+D+ +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   264 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 323

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR +TLDPAL+RPGR+DRKIEFPLPD + K+ +FQ     M L+D+V L++ + 
Sbjct:   324 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIM 383

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157
               D +S A+I AIC EAG+ A+R+ R  +  +DF+K  + NV
Sbjct:   384 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS-KENV 424


>ZFIN|ZDB-GENE-040625-69 [details] [associations]
            symbol:psmc1b "proteasome (prosome, macropain) 26S
            subunit, ATPase, 1b" species:7955 "Danio rerio" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-040625-69 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
            KO:K03062 GeneTree:ENSGT00550000074818 EMBL:AL935145 EMBL:BC071538
            IPI:IPI00495318 RefSeq:NP_001002091.1 UniGene:Dr.1187 STRING:Q6IQ72
            Ensembl:ENSDART00000063950 GeneID:415181 KEGG:dre:415181 CTD:415181
            InParanoid:Q6IQ72 NextBio:20818851 Uniprot:Q6IQ72
        Length = 440

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 88/162 (54%), Positives = 126/162 (77%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR++FR+A+E+AP+I+FIDE+DAI T R+D+ +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 325

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR +TLDPAL+RPGR+DRKIEFPLPD + KR +FQ     M ++++V L+D + 
Sbjct:   326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTVAEDVSLDDLIL 385

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157
               D +S A+I AIC EAG+ A+R+ R  +  +DF+K  + NV
Sbjct:   386 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS-KENV 426


>UNIPROTKB|Q90732 [details] [associations]
            symbol:PSMC1 "26S protease regulatory subunit 4"
            species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062 EMBL:U60187
            IPI:IPI00585304 PIR:S74197 RefSeq:NP_990289.1 UniGene:Gga.1071
            ProteinModelPortal:Q90732 STRING:Q90732 PRIDE:Q90732 GeneID:395804
            KEGG:gga:395804 CTD:5700 InParanoid:Q90732 OrthoDB:EOG4D7Z5Q
            NextBio:20815872 Uniprot:Q90732
        Length = 440

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 85/156 (54%), Positives = 122/156 (78%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR++FR+A+E+ P+I+FIDE+DAI T R+D+ +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   266 LVRELFRVAEEHGPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 325

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR +TLDPAL+RPGR+DRKIEFPLPD + K+ +FQ     M L+D+V L++ + 
Sbjct:   326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIM 385

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
               D +S A+I AIC EAG+ A+R+ R  +  +DF+K
Sbjct:   386 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKK 421


>FB|FBgn0015282 [details] [associations]
            symbol:Rpt2 "Regulatory particle triple-A ATPase 2"
            species:7227 "Drosophila melanogaster" [GO:0006508 "proteolysis"
            evidence=ISS;IDA;NAS] [GO:0000502 "proteasome complex"
            evidence=NAS] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=NAS] [GO:0016887 "ATPase activity" evidence=NAS]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=ISS] [GO:0004175 "endopeptidase activity" evidence=IDA]
            [GO:0005838 "proteasome regulatory particle" evidence=ISS;IDA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0009987 "cellular process" evidence=IMP] [GO:0007052 "mitotic
            spindle organization" evidence=IMP] [GO:0000022 "mitotic spindle
            elongation" evidence=IMP] [GO:0008283 "cell proliferation"
            evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 EMBL:AE014297 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008283 GO:GO:0006508 GO:GO:0006974
            GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 GO:GO:0000022
            eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540 KO:K03062
            OMA:FIRNQER GeneTree:ENSGT00550000074818 EMBL:U39303 EMBL:AY058759
            RefSeq:NP_524469.2 UniGene:Dm.2368 ProteinModelPortal:P48601
            SMR:P48601 DIP:DIP-17276N IntAct:P48601 MINT:MINT-817128
            STRING:P48601 PaxDb:P48601 PRIDE:P48601 EnsemblMetazoa:FBtr0084520
            GeneID:42828 KEGG:dme:Dmel_CG5289 CTD:42828 FlyBase:FBgn0015282
            InParanoid:P48601 OrthoDB:EOG4R4XJ3 PhylomeDB:P48601
            BRENDA:3.4.25.1 ChiTaRS:Pros26.4 GenomeRNAi:42828 NextBio:830777
            Bgee:P48601 GermOnline:CG5289 Uniprot:P48601
        Length = 439

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 84/156 (53%), Positives = 123/156 (78%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR++FR+A+E+AP+I+FIDE+DA+ T R+D+ +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   265 LVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 324

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF-----QMNLSDEVDLEDYVS 115
             KVIMATNR +TLDPAL+RPGR+DRKIEFPLPD + KR +F     +M L+++V+L + + 
Sbjct:   325 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIM 384

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
               D +S A+I AIC EAG+ A+R+ R  +  +DF+K
Sbjct:   385 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKK 420


>TAIR|locus:2119926 [details] [associations]
            symbol:RPT2a "regulatory particle AAA-ATPase 2A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
            [GO:0009933 "meristem structural organization" evidence=IMP]
            [GO:0009965 "leaf morphogenesis" evidence=IMP] [GO:0010015 "root
            morphogenesis" evidence=IMP] [GO:0010078 "maintenance of root
            meristem identity" evidence=IMP] [GO:0010311 "lateral root
            formation" evidence=IMP] [GO:0035266 "meristem growth"
            evidence=IMP] [GO:0048367 "shoot system development" evidence=IMP]
            [GO:0048827 "phyllome development" evidence=IMP] [GO:0048829 "root
            cap development" evidence=IMP] [GO:0046686 "response to cadmium
            ion" evidence=IEP;RCA] [GO:0016020 "membrane" evidence=IDA]
            [GO:0009408 "response to heat" evidence=IMP] [GO:0043161
            "proteasomal ubiquitin-dependent protein catabolic process"
            evidence=RCA;IMP] [GO:0043248 "proteasome assembly"
            evidence=RCA;IMP] [GO:0048364 "root development" evidence=IMP]
            [GO:0051788 "response to misfolded protein" evidence=RCA;IMP]
            [GO:0080129 "proteasome core complex assembly" evidence=RCA;IMP]
            [GO:0000502 "proteasome complex" evidence=IDA] [GO:0005829
            "cytosol" evidence=RCA] [GO:0007292 "female gamete generation"
            evidence=IGI] [GO:0048232 "male gamete generation" evidence=IGI]
            [GO:0090351 "seedling development" evidence=IMP] [GO:0006094
            "gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
            [GO:0009407 "toxin catabolic process" evidence=RCA] [GO:0009651
            "response to salt stress" evidence=RCA] [GO:0009853
            "photorespiration" evidence=RCA] [GO:0042023 "DNA
            endoreduplication" evidence=RCA] [GO:0051510 "regulation of
            unidimensional cell growth" evidence=RCA] [GO:0060968 "regulation
            of gene silencing" evidence=IMP] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IDA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0046686 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0043161 GO:GO:0016020 EMBL:AL078470
            EMBL:AL161574 GO:GO:0009408 GO:GO:0010311 GO:GO:0048829
            GO:GO:0000502 GO:GO:0043248 GO:GO:0017111 GO:GO:0009965
            GO:GO:0009933 EMBL:AL078469 GO:GO:0007292 GO:GO:0060968
            GO:GO:0010078 HSSP:P43773 GO:GO:0051788 GO:GO:0090351 GO:GO:0048232
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            EMBL:AF123391 EMBL:AB161192 EMBL:AY034975 IPI:IPI00538666
            PIR:T08959 RefSeq:NP_194633.1 UniGene:At.24596
            ProteinModelPortal:Q9SZD4 SMR:Q9SZD4 IntAct:Q9SZD4 STRING:Q9SZD4
            PaxDb:Q9SZD4 PRIDE:Q9SZD4 EnsemblPlants:AT4G29040.1 GeneID:829025
            KEGG:ath:AT4G29040 GeneFarm:1494 TAIR:At4g29040 InParanoid:Q9SZD4
            KO:K03062 OMA:SAIVMEA PhylomeDB:Q9SZD4 ProtClustDB:CLSN2683303
            GO:GO:0035266 Uniprot:Q9SZD4
        Length = 443

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 85/156 (54%), Positives = 122/156 (78%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR++FR+A + +P+I+FIDE+DA+ T R+DA +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   269 LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV 328

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R +FQ     M LS++V+LE++V 
Sbjct:   329 KVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVM 388

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
               D+ S A+I AIC EAG+ A+R+ R  +   DF+K
Sbjct:   389 TKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKK 424


>TAIR|locus:2061639 [details] [associations]
            symbol:RPT2b "regulatory particle AAA-ATPase 2b"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005886 "plasma
            membrane" evidence=IDA] [GO:0000502 "proteasome complex"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007292
            "female gamete generation" evidence=IGI] [GO:0010078 "maintenance
            of root meristem identity" evidence=IMP] [GO:0048232 "male gamete
            generation" evidence=IGI] [GO:0042023 "DNA endoreduplication"
            evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0051510 "regulation of unidimensional cell
            growth" evidence=RCA] [GO:0051788 "response to misfolded protein"
            evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 EMBL:AC006081 GO:GO:0007292
            GO:GO:0010078 HSSP:P43773 GO:GO:0048232 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 UniGene:At.24596 KO:K03062
            ProtClustDB:CLSN2683303 EMBL:AF372977 EMBL:AY035072 EMBL:AY056335
            EMBL:AY087584 IPI:IPI00521093 PIR:E84585 RefSeq:NP_179604.1
            UniGene:At.13496 ProteinModelPortal:Q9SL67 SMR:Q9SL67 IntAct:Q9SL67
            STRING:Q9SL67 PaxDb:Q9SL67 PRIDE:Q9SL67 EnsemblPlants:AT2G20140.1
            GeneID:816533 KEGG:ath:AT2G20140 GeneFarm:1495 TAIR:At2g20140
            InParanoid:Q9SL67 OMA:FIRNQER PhylomeDB:Q9SL67 Uniprot:Q9SL67
        Length = 443

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 84/156 (53%), Positives = 122/156 (78%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR++FR+A + +P+I+FIDE+DA+ T R+DA +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   269 LVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDV 328

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R +FQ     M L+++V+LE++V 
Sbjct:   329 KVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVM 388

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
               D+ S A+I AIC EAG+ A+R+ R  +   DF+K
Sbjct:   389 TKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKK 424


>GENEDB_PFALCIPARUM|PF10_0081 [details] [associations]
            symbol:PF10_0081 "26S proteasome regulatory
            subunit 4, putative" species:5833 "Plasmodium falciparum"
            [GO:0004175 "endopeptidase activity" evidence=ISS] [GO:0005838
            "proteasome regulatory particle" evidence=ISS] [GO:0006508
            "proteolysis" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
            GO:GO:0004175 GO:GO:0030163 GO:GO:0017111 EMBL:AE014185
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
            ProtClustDB:PTZ00361 GO:GO:0005838 RefSeq:XP_001347366.2
            ProteinModelPortal:Q8IJW0 IntAct:Q8IJW0 MINT:MINT-1726172
            PRIDE:Q8IJW0 EnsemblProtists:PF10_0081:mRNA GeneID:810239
            KEGG:pfa:PF10_0081 EuPathDB:PlasmoDB:PF3D7_1008400 Uniprot:Q8IJW0
        Length = 448

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 84/156 (53%), Positives = 120/156 (76%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR++F++A+E+AP+I+FIDE+DA+ T R++A +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   274 LVREMFKVAEEHAPSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELLNQLDGFDSRGDV 333

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR D+LDPAL+RPGR+DRKI+ P PD + KR +FQ     M +S +VDLE++V 
Sbjct:   334 KVIMATNRIDSLDPALIRPGRIDRKIQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVM 393

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
               D++S A+I AIC EAG+ A+R+ R  I   D  K
Sbjct:   394 SKDELSGADIKAICTEAGLLALRERRMKITQADLRK 429


>UNIPROTKB|Q8IJW0 [details] [associations]
            symbol:PF10_0081 "26S proteasome regulatory subunit 4,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
            "endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
            regulatory particle" evidence=ISS] [GO:0006508 "proteolysis"
            evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
            GO:GO:0004175 GO:GO:0030163 GO:GO:0017111 EMBL:AE014185
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
            ProtClustDB:PTZ00361 GO:GO:0005838 RefSeq:XP_001347366.2
            ProteinModelPortal:Q8IJW0 IntAct:Q8IJW0 MINT:MINT-1726172
            PRIDE:Q8IJW0 EnsemblProtists:PF10_0081:mRNA GeneID:810239
            KEGG:pfa:PF10_0081 EuPathDB:PlasmoDB:PF3D7_1008400 Uniprot:Q8IJW0
        Length = 448

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 84/156 (53%), Positives = 120/156 (76%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR++F++A+E+AP+I+FIDE+DA+ T R++A +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   274 LVREMFKVAEEHAPSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELLNQLDGFDSRGDV 333

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR D+LDPAL+RPGR+DRKI+ P PD + KR +FQ     M +S +VDLE++V 
Sbjct:   334 KVIMATNRIDSLDPALIRPGRIDRKIQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVM 393

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
               D++S A+I AIC EAG+ A+R+ R  I   D  K
Sbjct:   394 SKDELSGADIKAICTEAGLLALRERRMKITQADLRK 429


>ASPGD|ASPL0000049719 [details] [associations]
            symbol:AN2213 species:162425 "Emericella nidulans"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0070682 "proteasome
            regulatory particle assembly" evidence=IEA] [GO:0043161
            "proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IEA] [GO:0043171 "peptide catabolic process"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:BN001307
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER
            OrthoDB:EOG4FN7S6 EMBL:AACD01000035 RefSeq:XP_659817.1
            ProteinModelPortal:Q5BB67 STRING:Q5BB67
            EnsemblFungi:CADANIAT00008897 GeneID:2875757 KEGG:ani:AN2213.2
            Uniprot:Q5BB67
        Length = 460

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 83/168 (49%), Positives = 124/168 (73%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR +F++A E+AP+I+FIDE+DAI T R+D+ +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   285 LVRQIFQVAAEHAPSIVFIDEIDAIGTKRYDSTSGGEREIQRTMLELLNQLDGFDDRGDV 344

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF-----QMNLSDEVDLEDYVS 115
             KVIMATN+ +TLDPAL+RPGR+DRKI F  PD+  K+ +F     +M+L D+VDL+++++
Sbjct:   345 KVIMATNKIETLDPALIRPGRIDRKILFENPDQNTKKKIFTLHTSKMSLGDDVDLDEFIN 404

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD 163
             + D +S A+I AIC EAG+ A+R+ R  +   DF +  R  + K   D
Sbjct:   405 QKDDLSGADIRAICTEAGLMALRERRMRVQMDDF-RAARERIMKTKQD 451


>SGD|S000002165 [details] [associations]
            symbol:RPT2 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA;IDA] [GO:0016887 "ATPase activity"
            evidence=IDA] [GO:0070682 "proteasome regulatory particle assembly"
            evidence=IMP] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=IMP] [GO:0008540 "proteasome regulatory particle,
            base subcomplex" evidence=IDA] [GO:0045732 "positive regulation of
            protein catabolic process" evidence=IDA] [GO:0043171 "peptide
            catabolic process" evidence=IMP] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            SGD:S000002165 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            EMBL:BK006938 GO:GO:0016887 GO:GO:0043171 GO:GO:0006511
            GO:GO:0045732 EMBL:Z48432 GO:GO:0070682 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T
            PDBsum:4B4T KO:K03062 OMA:FIRNQER GeneTree:ENSGT00550000074818
            OrthoDB:EOG4FN7S6 EMBL:X81070 EMBL:L17040 EMBL:Z74055 PIR:S46613
            RefSeq:NP_010277.1 ProteinModelPortal:P40327 SMR:P40327
            DIP:DIP-6282N IntAct:P40327 MINT:MINT-632695 STRING:P40327
            PaxDb:P40327 PeptideAtlas:P40327 PRIDE:P40327 EnsemblFungi:YDL007W
            GeneID:851557 KEGG:sce:YDL007W NextBio:968983 Genevestigator:P40327
            GermOnline:YDL007W Uniprot:P40327
        Length = 437

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 83/171 (48%), Positives = 123/171 (71%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             + R +F++A ENAP+I+FIDE+DAI T R+D+ +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   263 LCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDV 322

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF-----QMNLSDEVDLEDYVS 115
             KVIMATN+ +TLDPAL+RPGR+DRKI F  PD   K+ +      +MNLS++V+LE  V+
Sbjct:   323 KVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVT 382

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK-KPDTDFE 165
               D +S A+I A+C EAG+ A+R+ R  +  +DF++     +K K + + E
Sbjct:   383 TKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEENLE 433


>POMBASE|SPBC4.07c [details] [associations]
            symbol:rpt2 "19S proteasome regulatory subunit Rpt2"
            species:4896 "Schizosaccharomyces pombe" [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IC]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0007346 "regulation of mitotic cell cycle"
            evidence=IC] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IGI] [GO:0016887 "ATPase activity"
            evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IMP] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 PomBase:SPBC4.07c
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0007346
            GO:GO:0043161 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0016887
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            GO:GO:0008540 KO:K03062 OMA:FIRNQER EMBL:Z29366 PIR:S39348
            RefSeq:NP_595480.1 ProteinModelPortal:P36612 IntAct:P36612
            STRING:P36612 PRIDE:P36612 EnsemblFungi:SPBC4.07c.1 GeneID:2540939
            KEGG:spo:SPBC4.07c OrthoDB:EOG4FN7S6 NextBio:20802054
            Uniprot:P36612
        Length = 448

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 84/167 (50%), Positives = 119/167 (71%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTV-N 59
             +VR +F  A+E++P+I+FIDE+DAI T R+DAQ+GA+RE+QR ++ELLNQ+DGFD +  +
Sbjct:   272 LVRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAEREIQRTMLELLNQLDGFDTSQRD 331

Query:    60 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF-----QMNLSDEVDLEDYV 114
             +KVIMATNR   LDPAL+RPGR+DRKI F  PD   KR +F     +MNL ++V+LE+ +
Sbjct:   332 IKVIMATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELI 391

Query:   115 SRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPD 161
                D +S AEI AI  EAG+ A+R+ R  ++  DF +     +K  D
Sbjct:   392 QCKDDLSGAEIKAIVSEAGLLALRERRMRVVMDDFRQAREKVLKTKD 438


>DICTYBASE|DDB_G0284415 [details] [associations]
            symbol:psmC3 "26S proteasome ATPase 3 subunit"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000502 "proteasome
            complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 dictyBase:DDB_G0284415 GO:GO:0005524 GO:GO:0005634
            GO:GO:0045335 GenomeReviews:CM000153_GR GO:GO:0030163 GO:GO:0000502
            HSSP:Q01853 GO:GO:0017111 EMBL:AAFI02000064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
            RefSeq:XP_638617.1 ProteinModelPortal:Q54PN7 STRING:Q54PN7
            PRIDE:Q54PN7 EnsemblProtists:DDB0232967 GeneID:8624588
            KEGG:ddi:DDB_G0284415 InParanoid:Q54PN7 OMA:GALMYGP
            ProtClustDB:CLSZ2433711 Uniprot:Q54PN7
        Length = 421

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 84/172 (48%), Positives = 112/172 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE  P IIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF    N+
Sbjct:   249 LVRDAFALAKEKGPTIIFIDELDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDANI 308

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR D LDPALLR GRLDRKIEFPLP+   +  + Q     MN+S +V+ ++   
Sbjct:   309 KVIAATNRIDILDPALLRSGRLDRKIEFPLPNEEARAHILQIHSRKMNVSADVNFDELAR 368

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
               +  + A++ A+C EAGM A+R+    ++  DF +G    + K     E+Y
Sbjct:   369 SSEDFNGAQLKAVCVEAGMIALRRGGTELIHNDFVEGCVEVMAKKKKTLEYY 420


>WB|WBGene00015688 [details] [associations]
            symbol:C10G11.8 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0030163 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
            GeneTree:ENSGT00550000074818 HSSP:Q9LCZ4 EMBL:FO080499 PIR:D87802
            RefSeq:NP_491811.1 ProteinModelPortal:P91025 SMR:P91025
            STRING:P91025 PaxDb:P91025 EnsemblMetazoa:C10G11.8 GeneID:172324
            KEGG:cel:CELE_C10G11.8 UCSC:C10G11.8 CTD:172324 WormBase:C10G11.8
            InParanoid:P91025 OMA:RGIENAN NextBio:875027 Uniprot:P91025
        Length = 438

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 80/160 (50%), Positives = 112/160 (70%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR +F++AKE AP+I+FIDE+DA+ T RFD  +  ++EVQR L+ELLNQ+DGF+   +V
Sbjct:   264 LVRQIFQMAKEQAPSIVFIDEIDAVGTKRFDTSSRGEQEVQRTLLELLNQLDGFESRGDV 323

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             K+IMATNR D+LDPAL+RPGR+DRKIE P PD + ++ +F      M +   V  E+ + 
Sbjct:   324 KIIMATNRIDSLDPALIRPGRIDRKIELPKPDEKTRQKIFTIHTSGMTIQKAVTYENVLG 383

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155
             +   IS AEI A+C EAGM A+R  R  +   DFEK  ++
Sbjct:   384 KEKSISGAEIKAVCTEAGMLALRAQRKCVGTDDFEKAVKS 423


>GENEDB_PFALCIPARUM|PF11_0314 [details] [associations]
            symbol:PF11_0314 "26S protease subunit
            regulatory subunit 6a, putative" species:5833 "Plasmodium
            falciparum" [GO:0004175 "endopeptidase activity" evidence=ISS]
            [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0000502 "proteasome complex"
            evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
            GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 GO:GO:0000502 HSSP:Q01853
            EMBL:AE014186 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
            OMA:GALMYGP ProtClustDB:CLSZ2433711 RefSeq:XP_001347985.1
            ProteinModelPortal:Q8II60 IntAct:Q8II60 MINT:MINT-1730387
            PRIDE:Q8II60 EnsemblProtists:PF11_0314:mRNA GeneID:810861
            KEGG:pfa:PF11_0314 EuPathDB:PlasmoDB:PF3D7_1130400 Uniprot:Q8II60
        Length = 439

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 86/172 (50%), Positives = 112/172 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRD F LAKE APAIIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF     V
Sbjct:   267 MVRDAFNLAKEKAPAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDDTV 326

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR DTLDPALLR GRLDRKIE P P+   +  + Q     MN+  +V+ E+   
Sbjct:   327 KVIAATNRPDTLDPALLRSGRLDRKIELPHPNEESRARILQIHSRKMNVHKDVNFEELAR 386

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
               D  + A++ A+C EAGM A+R+    I  +DF +G  + + K  +   ++
Sbjct:   387 STDDFNGAQLKAVCVEAGMIALRRGATEIDHEDFVEGITSVLSKKKSTLNYF 438


>UNIPROTKB|Q8II60 [details] [associations]
            symbol:PF11_0314 "26S protease subunit regulatory subunit
            6a, putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000502
            "proteasome complex" evidence=ISS] [GO:0004175 "endopeptidase
            activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
            evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
            "ATPase activity" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006508 GO:GO:0016887 GO:GO:0004175
            GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 EMBL:AE014186
            TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP
            ProtClustDB:CLSZ2433711 RefSeq:XP_001347985.1
            ProteinModelPortal:Q8II60 IntAct:Q8II60 MINT:MINT-1730387
            PRIDE:Q8II60 EnsemblProtists:PF11_0314:mRNA GeneID:810861
            KEGG:pfa:PF11_0314 EuPathDB:PlasmoDB:PF3D7_1130400 Uniprot:Q8II60
        Length = 439

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 86/172 (50%), Positives = 112/172 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRD F LAKE APAIIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF     V
Sbjct:   267 MVRDAFNLAKEKAPAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDDTV 326

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR DTLDPALLR GRLDRKIE P P+   +  + Q     MN+  +V+ E+   
Sbjct:   327 KVIAATNRPDTLDPALLRSGRLDRKIELPHPNEESRARILQIHSRKMNVHKDVNFEELAR 386

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
               D  + A++ A+C EAGM A+R+    I  +DF +G  + + K  +   ++
Sbjct:   387 STDDFNGAQLKAVCVEAGMIALRRGATEIDHEDFVEGITSVLSKKKSTLNYF 438


>UNIPROTKB|F1NDQ1 [details] [associations]
            symbol:PSMC3 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242
            EMBL:AADN02033470 EMBL:AADN02033469 IPI:IPI00819977
            Ensembl:ENSGALT00000013163 Uniprot:F1NDQ1
        Length = 385

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 84/172 (48%), Positives = 112/172 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE AP+IIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF     V
Sbjct:   213 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 272

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR D LDPALLR GRLDRKIEFP+P+   +  + Q     MN+S +V+ E+   
Sbjct:   273 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 332

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
               D  + A+  A+C EAGM A+R+    +  +D+ +G      K   + ++Y
Sbjct:   333 CTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYY 384


>UNIPROTKB|F1P3L9 [details] [associations]
            symbol:PSMC3 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0001824 "blastocyst
            development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0022624 "proteasome
            accessory complex" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242 OMA:GALMYGP
            EMBL:AADN02033470 EMBL:AADN02033469 IPI:IPI00601469
            Ensembl:ENSGALT00000038503 Uniprot:F1P3L9
        Length = 389

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 84/172 (48%), Positives = 112/172 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE AP+IIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF     V
Sbjct:   217 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 276

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR D LDPALLR GRLDRKIEFP+P+   +  + Q     MN+S +V+ E+   
Sbjct:   277 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 336

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
               D  + A+  A+C EAGM A+R+    +  +D+ +G      K   + ++Y
Sbjct:   337 CTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYY 388


>UNIPROTKB|F1MWE0 [details] [associations]
            symbol:PSMC3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0022624 "proteasome accessory complex" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 GeneTree:ENSGT00560000077230 GO:GO:0001824
            TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:DAAA02041602 IPI:IPI00701790
            UniGene:Bt.49089 Ensembl:ENSBTAT00000028983 NextBio:20868523
            Uniprot:F1MWE0
        Length = 456

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 84/172 (48%), Positives = 112/172 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE AP+IIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF     V
Sbjct:   284 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 343

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR D LDPALLR GRLDRKIEFP+P+   +  + Q     MN+S +V+ E+   
Sbjct:   344 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 403

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
               D  + A+  A+C EAGM A+R+    +  +D+ +G      K   + ++Y
Sbjct:   404 CTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYY 455


>UNIPROTKB|F1PBK7 [details] [associations]
            symbol:PSMC3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 GeneTree:ENSGT00560000077230
            TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:AAEX03011486
            Ensembl:ENSCAFT00000013842 Uniprot:F1PBK7
        Length = 439

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 84/172 (48%), Positives = 112/172 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE AP+IIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF     V
Sbjct:   267 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 326

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR D LDPALLR GRLDRKIEFP+P+   +  + Q     MN+S +V+ E+   
Sbjct:   327 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 386

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
               D  + A+  A+C EAGM A+R+    +  +D+ +G      K   + ++Y
Sbjct:   387 CTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYY 438


>UNIPROTKB|E9PM69 [details] [associations]
            symbol:PSMC3 "26S protease regulatory subunit 6A"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 EMBL:AC090559 TIGRFAMs:TIGR01242 HGNC:HGNC:9549
            ChiTaRS:PSMC3 IPI:IPI00979423 ProteinModelPortal:E9PM69 SMR:E9PM69
            PRIDE:E9PM69 Ensembl:ENST00000530912 ArrayExpress:E9PM69
            Bgee:E9PM69 Uniprot:E9PM69
        Length = 397

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 84/172 (48%), Positives = 112/172 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE AP+IIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF     V
Sbjct:   225 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 284

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR D LDPALLR GRLDRKIEFP+P+   +  + Q     MN+S +V+ E+   
Sbjct:   285 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 344

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
               D  + A+  A+C EAGM A+R+    +  +D+ +G      K   + ++Y
Sbjct:   345 CTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYY 396


>UNIPROTKB|P17980 [details] [associations]
            symbol:PSMC3 "26S protease regulatory subunit 6A"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0019048 "virus-host interaction" evidence=IEA] [GO:0001824
            "blastocyst development" evidence=IEA] [GO:0048471 "perinuclear
            region of cytoplasm" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
            processing body" evidence=ISS] [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0003713 "transcription coactivator
            activity" evidence=TAS] [GO:0003714 "transcription corepressor
            activity" evidence=TAS] [GO:0000502 "proteasome complex"
            evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
            [GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
            [GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
            [GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
            "M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
            "mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
            and presentation of peptide antigen via MHC class I" evidence=TAS]
            [GO:0002479 "antigen processing and presentation of exogenous
            peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
            evidence=TAS] [GO:0006521 "regulation of cellular amino acid
            metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
            evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
            by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
            reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
            evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
            [GO:0031145 "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] Reactome:REACT_13505 Reactome:REACT_578
            Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
            Reactome:REACT_111217 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0003714
            GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566
            GO:GO:0019048 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
            EMBL:CH471064 Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981
            GO:GO:0044281 GO:GO:0000082 GO:GO:0003713 GO:GO:0051436
            GO:GO:0017111 GO:GO:0000932 GO:GO:0000216 GO:GO:0000209
            GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
            GO:GO:0001824 Reactome:REACT_383 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624 OMA:GALMYGP
            EMBL:AK313518 EMBL:BC008713 EMBL:BC073165 EMBL:BC106920
            EMBL:BC107804 EMBL:AK222485 EMBL:M34079 EMBL:CR456731
            IPI:IPI00018398 PIR:A34832 RefSeq:NP_002795.2 UniGene:Hs.250758
            ProteinModelPortal:P17980 SMR:P17980 DIP:DIP-27555N IntAct:P17980
            MINT:MINT-1149785 STRING:P17980 PhosphoSite:P17980 DMDM:20532406
            REPRODUCTION-2DPAGE:IPI00018398 PaxDb:P17980 PeptideAtlas:P17980
            PRIDE:P17980 DNASU:5702 Ensembl:ENST00000298852 GeneID:5702
            KEGG:hsa:5702 UCSC:uc001nfh.2 CTD:5702 GeneCards:GC11M047440
            HGNC:HGNC:9549 HPA:HPA006065 MIM:186852 neXtProt:NX_P17980
            PharmGKB:PA33894 InParanoid:P17980 OrthoDB:EOG46143Z
            PhylomeDB:P17980 ChiTaRS:PSMC3 GenomeRNAi:5702 NextBio:22154
            PMAP-CutDB:P17980 ArrayExpress:P17980 Bgee:P17980 CleanEx:HS_PSMC3
            Genevestigator:P17980 GermOnline:ENSG00000165916 Uniprot:P17980
        Length = 439

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 84/172 (48%), Positives = 112/172 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE AP+IIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF     V
Sbjct:   267 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 326

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR D LDPALLR GRLDRKIEFP+P+   +  + Q     MN+S +V+ E+   
Sbjct:   327 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 386

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
               D  + A+  A+C EAGM A+R+    +  +D+ +G      K   + ++Y
Sbjct:   387 CTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYY 438


>UNIPROTKB|F1SID4 [details] [associations]
            symbol:PSMC3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 GeneTree:ENSGT00560000077230 GO:GO:0001824
            TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:CU856312
            Ensembl:ENSSSCT00000014459 Uniprot:F1SID4
        Length = 446

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 84/172 (48%), Positives = 112/172 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE AP+IIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF     V
Sbjct:   274 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 333

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR D LDPALLR GRLDRKIEFP+P+   +  + Q     MN+S +V+ E+   
Sbjct:   334 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 393

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
               D  + A+  A+C EAGM A+R+    +  +D+ +G      K   + ++Y
Sbjct:   394 CTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYY 445


>UNIPROTKB|Q58576 [details] [associations]
            symbol:pan "Proteasome-activating nucleotidase"
            species:243232 "Methanocaldococcus jannaschii DSM 2661" [GO:0003924
            "GTPase activity" evidence=IDA] [GO:0006184 "GTP catabolic process"
            evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
            [GO:0010498 "proteasomal protein catabolic process" evidence=IDA]
            [GO:0016887 "ATPase activity" evidence=IDA] [GO:0022623
            "proteasome-activating nucleotidase complex" evidence=IDA]
            [GO:0043273 "CTPase activity" evidence=IDA] [GO:0043335 "protein
            unfolding" evidence=IDA] HAMAP:MF_00553 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003924 GO:GO:0016887 GO:GO:0010498
            GO:GO:0022623 GO:GO:0043335 GO:GO:0043273 EMBL:L77117
            GenomeReviews:L77117_GR PIR:G64446 RefSeq:NP_248170.1 PDB:3H43
            PDB:3H4M PDB:3IPM PDBsum:3H43 PDBsum:3H4M PDBsum:3IPM
            ProteinModelPortal:Q58576 SMR:Q58576 PRIDE:Q58576 GeneID:1452074
            KEGG:mja:MJ_1176 eggNOG:COG1222 KO:K03420 OMA:RVNERKA
            ProtClustDB:PRK03992 EvolutionaryTrace:Q58576 InterPro:IPR023501
            TIGRFAMs:TIGR01242 Uniprot:Q58576
        Length = 430

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 85/164 (51%), Positives = 113/164 (68%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +V+D+F+LAKE AP+IIFIDE+DAIA  R DA TG DREVQR LM+LL +MDGFD   +V
Sbjct:   251 LVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDV 310

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             K+I ATNR D LDPA+LRPGR DR IE P PD + +  + +     MNL+++V+LE+   
Sbjct:   311 KIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAK 370

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 159
               +    AE+ AIC EAGM+A+R+ R  +   DF K     ++K
Sbjct:   371 MTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEK 414


>MGI|MGI:1098754 [details] [associations]
            symbol:Psmc3 "proteasome (prosome, macropain) 26S subunit,
            ATPase 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0001824 "blastocyst development" evidence=IMP]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0048471 "perinuclear region of
            cytoplasm" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 MGI:MGI:1098754 GO:GO:0005524 GO:GO:0005634
            GO:GO:0030163 GO:GO:0017111 GO:GO:0000932
            GeneTree:ENSGT00560000077230 GO:GO:0001824 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624
            CTD:5702 ChiTaRS:PSMC3 EMBL:D49686 EMBL:AB040858 EMBL:AY902337
            EMBL:AL691439 EMBL:BC005783 IPI:IPI00133206 RefSeq:NP_032974.2
            UniGene:Mm.289832 ProteinModelPortal:O88685 SMR:O88685
            IntAct:O88685 STRING:O88685 PhosphoSite:O88685 PaxDb:O88685
            PRIDE:O88685 Ensembl:ENSMUST00000067663 GeneID:19182 KEGG:mmu:19182
            NextBio:295874 Bgee:O88685 Genevestigator:O88685
            GermOnline:ENSMUSG00000002102 Uniprot:O88685
        Length = 442

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 84/172 (48%), Positives = 112/172 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE AP+IIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF     V
Sbjct:   270 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 329

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR D LDPALLR GRLDRKIEFP+P+   +  + Q     MN+S +V+ E+   
Sbjct:   330 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 389

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
               D  + A+  A+C EAGM A+R+    +  +D+ +G      K   + ++Y
Sbjct:   390 CTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYY 441


>RGD|61905 [details] [associations]
            symbol:Psmc3 "proteasome (prosome, macropain) 26S subunit, ATPase
           3" species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
           processing body" evidence=ISS] [GO:0001824 "blastocyst development"
           evidence=IEA;ISO] [GO:0005515 "protein binding" evidence=IPI]
           [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
           evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO;IDA]
           [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
           [GO:0022624 "proteasome accessory complex" evidence=IEA;ISO;ISS]
           [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0048471
           "perinuclear region of cytoplasm" evidence=IDA] InterPro:IPR003593
           InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
           Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:61905 GO:GO:0005524
           GO:GO:0005634 GO:GO:0048471 GO:GO:0030163 GO:GO:0017111
           GO:GO:0000932 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
           KO:K03065 GO:GO:0022624 CTD:5702 EMBL:D83522 EMBL:U77918
           IPI:IPI00421528 RefSeq:NP_113783.1 UniGene:Rn.11173
           ProteinModelPortal:Q63569 IntAct:Q63569 STRING:Q63569
           PhosphoSite:Q63569 PRIDE:Q63569 GeneID:29677 KEGG:rno:29677
           UCSC:RGD:61905 NextBio:610019 ArrayExpress:Q63569
           Genevestigator:Q63569 GermOnline:ENSRNOG00000011414 Uniprot:Q63569
        Length = 439

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 84/172 (48%), Positives = 112/172 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE AP+IIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF     V
Sbjct:   267 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 326

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR D LDPALLR GRLDRKIEFP+P+   +  + Q     MN+S +V+ E+   
Sbjct:   327 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 386

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
               D  + A+  A+C EAGM A+R+    +  +D+ +G      K   + ++Y
Sbjct:   387 CTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYY 438


>UNIPROTKB|Q6P6U2 [details] [associations]
            symbol:Psmc3 "26S protease regulatory subunit 6A"
            species:10116 "Rattus norvegicus" [GO:0001824 "blastocyst
            development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            RGD:61905 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0000502
            GO:GO:0017111 GeneTree:ENSGT00560000077230 EMBL:CH473949
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
            IPI:IPI00421528 UniGene:Rn.11173 EMBL:BC062019 SMR:Q6P6U2
            IntAct:Q6P6U2 STRING:Q6P6U2 Ensembl:ENSRNOT00000015757
            Genevestigator:Q6P6U2 Uniprot:Q6P6U2
        Length = 442

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 84/172 (48%), Positives = 112/172 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE AP+IIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF     V
Sbjct:   270 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 329

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR D LDPALLR GRLDRKIEFP+P+   +  + Q     MN+S +V+ E+   
Sbjct:   330 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 389

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
               D  + A+  A+C EAGM A+R+    +  +D+ +G      K   + ++Y
Sbjct:   390 CTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYY 441


>TAIR|locus:2079742 [details] [associations]
            symbol:RPT5A "regulatory particle triple-A ATPase 5A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;IDA;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
            [GO:0005516 "calmodulin binding" evidence=TAS] [GO:0009553 "embryo
            sac development" evidence=IGI] [GO:0009555 "pollen development"
            evidence=IGI] [GO:0010498 "proteasomal protein catabolic process"
            evidence=IGI;RCA] [GO:0000502 "proteasome complex" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0000741 "karyogamy"
            evidence=RCA] [GO:0006094 "gluconeogenesis" evidence=RCA]
            [GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0007010
            "cytoskeleton organization" evidence=RCA] [GO:0009407 "toxin
            catabolic process" evidence=RCA] [GO:0009560 "embryo sac egg cell
            differentiation" evidence=RCA] [GO:0009630 "gravitropism"
            evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0051788 "response to misfolded protein"
            evidence=RCA] [GO:0080129 "proteasome core complex assembly"
            evidence=RCA] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009555 GO:GO:0000502
            GO:GO:0017111 GO:GO:0009553 GO:GO:0010498 EMBL:AC009606
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
            OMA:GALMYGP EMBL:AF081573 EMBL:AF123394 EMBL:AY062705 EMBL:BT000140
            IPI:IPI00517001 RefSeq:NP_187204.1 UniGene:At.11513 HSSP:Q9LCZ4
            ProteinModelPortal:Q9SEI2 SMR:Q9SEI2 IntAct:Q9SEI2 STRING:Q9SEI2
            PaxDb:Q9SEI2 PRIDE:Q9SEI2 EnsemblPlants:AT3G05530.1 GeneID:819718
            KEGG:ath:AT3G05530 GeneFarm:2742 TAIR:At3g05530 InParanoid:Q9SEI2
            PhylomeDB:Q9SEI2 ProtClustDB:CLSN2679225 Uniprot:Q9SEI2
        Length = 424

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 83/172 (48%), Positives = 110/172 (63%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F+LAKE AP IIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF     +
Sbjct:   252 LVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERI 311

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNRAD LDPAL+R GRLDRKIEFP P    +  + Q     MN+  +V+ E+   
Sbjct:   312 KVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELAR 371

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
               D  + A++ A+C EAGM A+R++   +  +DF +G      K      +Y
Sbjct:   372 STDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 423


>WB|WBGene00004504 [details] [associations]
            symbol:rpt-4 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
            [GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0008340 "determination of adult lifespan"
            evidence=IMP] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=ISS] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0002119
            GO:GO:0010171 GO:GO:0040011 GO:GO:0000003 GO:GO:0030163
            GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 EMBL:FO080251 PIR:T32268 RefSeq:NP_001022113.1
            RefSeq:NP_001022114.1 ProteinModelPortal:O17071 SMR:O17071
            IntAct:O17071 MINT:MINT-210603 STRING:O17071 PaxDb:O17071
            PRIDE:O17071 EnsemblMetazoa:F23F1.8a GeneID:173384
            KEGG:cel:CELE_F23F1.8 UCSC:F23F1.8a CTD:173384 WormBase:F23F1.8a
            WormBase:F23F1.8b GeneTree:ENSGT00550000074826 InParanoid:O17071
            OMA:EHKEVES NextBio:879415 GO:GO:0008540 Uniprot:O17071
        Length = 406

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 83/173 (47%), Positives = 115/173 (66%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             M+R++F  A+++ P I+F+DE+DAI   RF   T ADRE+QR LMELLNQ+DGFD    V
Sbjct:   231 MIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDSLGKV 290

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             KVIMATNR DTLDPALLRPGRLDRKIE  LP+ + +  + +++ +      E+D E  V 
Sbjct:   291 KVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVK 350

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT--NVKKPDTDFEF 166
               D  SAA++  +C EAGM A+R  R  ++ +DF K  R   + K+ +T  ++
Sbjct:   351 LSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVGDAKRLETKLDY 403


>UNIPROTKB|O17071 [details] [associations]
            symbol:rpt-4 "Probable 26S protease regulatory subunit 10B"
            species:6239 "Caenorhabditis elegans" [GO:0042802 "identical
            protein binding" evidence=IPI] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0002119
            GO:GO:0010171 GO:GO:0040011 GO:GO:0000003 GO:GO:0030163
            GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 EMBL:FO080251 PIR:T32268 RefSeq:NP_001022113.1
            RefSeq:NP_001022114.1 ProteinModelPortal:O17071 SMR:O17071
            IntAct:O17071 MINT:MINT-210603 STRING:O17071 PaxDb:O17071
            PRIDE:O17071 EnsemblMetazoa:F23F1.8a GeneID:173384
            KEGG:cel:CELE_F23F1.8 UCSC:F23F1.8a CTD:173384 WormBase:F23F1.8a
            WormBase:F23F1.8b GeneTree:ENSGT00550000074826 InParanoid:O17071
            OMA:EHKEVES NextBio:879415 GO:GO:0008540 Uniprot:O17071
        Length = 406

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 83/173 (47%), Positives = 115/173 (66%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             M+R++F  A+++ P I+F+DE+DAI   RF   T ADRE+QR LMELLNQ+DGFD    V
Sbjct:   231 MIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDSLGKV 290

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             KVIMATNR DTLDPALLRPGRLDRKIE  LP+ + +  + +++ +      E+D E  V 
Sbjct:   291 KVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVK 350

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT--NVKKPDTDFEF 166
               D  SAA++  +C EAGM A+R  R  ++ +DF K  R   + K+ +T  ++
Sbjct:   351 LSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVGDAKRLETKLDY 403


>UNIPROTKB|O42586 [details] [associations]
            symbol:psmc3-b "26S protease regulatory subunit 6A-B"
            species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 EMBL:Y10460 UniGene:Xl.113 ProteinModelPortal:O42586
            Xenbase:XB-GENE-1009853 Uniprot:O42586
        Length = 404

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 83/172 (48%), Positives = 112/172 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE AP+IIFIDE+DAI   RFD++   DREVQR ++ELLNQ+DGF  T  V
Sbjct:   232 LVRDAFSLAKEKAPSIIFIDELDAIGNKRFDSEKAGDREVQRTMLELLNQLDGFQPTTQV 291

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR D LDPALLR GRLDRKIEFP+P+   +  + Q     MN+S +V+ E+   
Sbjct:   292 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 351

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
               D  + A+  A+C EAG+ A+R+    +  +D+ +G      K   + ++Y
Sbjct:   352 CTDDFNGAQCKAVCVEAGIIALRRGATELTHEDYMEGILEVQAKKKANLQYY 403


>ZFIN|ZDB-GENE-030131-666 [details] [associations]
            symbol:psmc3 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 3" species:7955 "Danio rerio" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-030131-666 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 GeneTree:ENSGT00560000077230
            TIGRFAMs:TIGR01242 EMBL:BX957297 IPI:IPI00817732 PRIDE:F1QJQ2
            Ensembl:ENSDART00000133705 ArrayExpress:F1QJQ2 Bgee:F1QJQ2
            Uniprot:F1QJQ2
        Length = 427

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 83/172 (48%), Positives = 112/172 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE AP+IIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF   + V
Sbjct:   255 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQV 314

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR D LDPALLR GRLDRKIEFP+P+   +  + Q     MN+  +V+ E+   
Sbjct:   315 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVCPDVNFEELAR 374

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
               D  + A+  A+C EAGM A+R+    +  +D+ +G      K   + ++Y
Sbjct:   375 CTDDFNGAQCKAVCVEAGMIALRRGATELNHEDYMEGILEVQAKKKANLQYY 426


>TAIR|locus:2028200 [details] [associations]
            symbol:AT1G45000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
            "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0000502
            "proteasome complex" evidence=IDA] [GO:0005829 "cytosol"
            evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0030244
            "cellulose biosynthetic process" evidence=RCA] [GO:0048193 "Golgi
            vesicle transport" evidence=RCA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005886 GO:GO:0009506 GO:GO:0005524
            GO:GO:0005737 GO:GO:0005618 GO:GO:0005730 GO:GO:0030163
            GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AC007915 KO:K03064
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 OMA:EHKEVES
            ProtClustDB:CLSN2679874 EMBL:AY062709 EMBL:AY114673 IPI:IPI00531336
            RefSeq:NP_175120.1 UniGene:At.27257 ProteinModelPortal:Q9MAK9
            SMR:Q9MAK9 IntAct:Q9MAK9 STRING:Q9MAK9 PaxDb:Q9MAK9 PRIDE:Q9MAK9
            EnsemblPlants:AT1G45000.1 GeneID:841065 KEGG:ath:AT1G45000
            GeneFarm:2760 TAIR:At1g45000 InParanoid:Q9MAK9 PhylomeDB:Q9MAK9
            Uniprot:Q9MAK9
        Length = 399

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 83/173 (47%), Positives = 114/173 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  A+E+ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQ+DGFDQ   V
Sbjct:   220 LIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKV 279

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR D LDPALLRPGRLDRKIE PLP+ + +  + +++ S      E+D E  V 
Sbjct:   280 KMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVK 339

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEF 166
               +  + A++  IC EAGM A+R  R  ++ +DF K  R  +  KK ++   +
Sbjct:   340 LGEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRKLSEAKKLESSSHY 392


>CGD|CAL0005257 [details] [associations]
            symbol:RPT2 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
            evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0045732 "positive regulation
            of protein catabolic process" evidence=IEA] [GO:0043171 "peptide
            catabolic process" evidence=IEA] [GO:0016887 "ATPase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 CGD:CAL0005257 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 EMBL:AACQ01000051 EMBL:AACQ01000050
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03062 RefSeq:XP_717718.1
            RefSeq:XP_717812.1 ProteinModelPortal:Q5A7M6 STRING:Q5A7M6
            GeneID:3640525 GeneID:3640683 KEGG:cal:CaO19.12895
            KEGG:cal:CaO19.5440 Uniprot:Q5A7M6
        Length = 465

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 77/164 (46%), Positives = 120/164 (73%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             + R +F++A ++AP+I+FIDE+DAI T R+++ +G +RE+QR ++ELLNQ+DGFD   ++
Sbjct:   267 LCRQIFQIAADHAPSIVFIDEIDAIGTKRYESTSGGEREIQRTMLELLNQLDGFDDRGDI 326

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF-----QMNLSDEVDLEDYVS 115
             KVIMATN+ ++LDPAL+RPGR+DRKI F  PD   K+ +      +M+L+D+V+L++ V+
Sbjct:   327 KVIMATNKIESLDPALIRPGRIDRKILFENPDANTKKKILTIHTSKMSLADDVNLDEIVT 386

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 159
               D +S A+I AIC EAG+ A+R+ R  +  +DF K  +  V K
Sbjct:   387 GKDDLSGADIKAICTEAGLLALRERRMQVKAEDF-KSAKERVLK 429


>TAIR|locus:2036099 [details] [associations]
            symbol:RPT5B "26S proteasome AAA-ATPase subunit RPT5B"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005516 "calmodulin
            binding" evidence=ISS] [GO:0010255 "glucose mediated signaling
            pathway" evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0009553 "embryo sac
            development" evidence=IGI] [GO:0009555 "pollen development"
            evidence=IGI] [GO:0010498 "proteasomal protein catabolic process"
            evidence=IGI;RCA] [GO:0000502 "proteasome complex" evidence=IDA]
            [GO:0006094 "gluconeogenesis" evidence=RCA] [GO:0006635 "fatty acid
            beta-oxidation" evidence=RCA] [GO:0007010 "cytoskeleton
            organization" evidence=RCA] [GO:0009407 "toxin catabolic process"
            evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0051788 "response to misfolded protein"
            evidence=RCA] [GO:0080129 "proteasome core complex assembly"
            evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005886
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0009555
            GO:GO:0000502 GO:GO:0017111 GO:GO:0009553 EMBL:AC000106
            GO:GO:0010498 GO:GO:0010255 eggNOG:COG1222 TIGRFAMs:TIGR01242
            KO:K03065 HOGENOM:HOG000225143 ProtClustDB:CLSN2679225
            EMBL:EU980096 EMBL:AY050423 EMBL:AF412095 EMBL:AY124813
            IPI:IPI00549144 PIR:C86223 RefSeq:NP_172384.1 UniGene:At.10379
            UniGene:At.42241 ProteinModelPortal:O04019 SMR:O04019 IntAct:O04019
            STRING:O04019 PaxDb:O04019 PRIDE:O04019 EnsemblPlants:AT1G09100.1
            GeneID:837431 KEGG:ath:AT1G09100 GeneFarm:1498 TAIR:At1g09100
            InParanoid:O04019 OMA:VEILEMS PhylomeDB:O04019
            Genevestigator:O04019 Uniprot:O04019
        Length = 423

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 82/172 (47%), Positives = 110/172 (63%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE +P IIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF     +
Sbjct:   251 LVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRI 310

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNRAD LDPAL+R GRLDRKIEFP P    +  + Q     MN++ +V+ E+   
Sbjct:   311 KVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELAR 370

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
               D  + A++ A+C EAGM A+R++   +  +DF +G      K      +Y
Sbjct:   371 STDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 422


>UNIPROTKB|J9NWA6 [details] [associations]
            symbol:LOC100687152 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242
            EMBL:AAEX03026457 Ensembl:ENSCAFT00000026372 OMA:REAVEQP
            Uniprot:J9NWA6
        Length = 434

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 82/172 (47%), Positives = 111/172 (64%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE AP+IIFIDE+DA  T RFD++   DREVQR ++ELLNQ+DGF     V
Sbjct:   262 LVRDAFALAKEKAPSIIFIDELDATGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 321

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR D LDPALLR GRLD+KIEFP+P+   +  + Q     MN+S +V+ E+   
Sbjct:   322 KVIAATNRVDILDPALLRSGRLDQKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 381

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
               D  + A+  A+C EAGM A+R+    +  +D+ +G      K   + ++Y
Sbjct:   382 CMDDFNGAQCKAVCVEAGMIALRRGTTELTHEDYMEGILEVQAKKKANLQYY 433


>POMBASE|SPBC23G7.12c [details] [associations]
            symbol:rpt6 "19S proteasome regulatory subunit Rpt6
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
            "endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
            "nuclear envelope" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=ISO] [GO:0007346 "regulation of mitotic cell
            cycle" evidence=IC] [GO:0008540 "proteasome regulatory particle,
            base subcomplex" evidence=ISO] [GO:0016887 "ATPase activity"
            evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 PomBase:SPBC23G7.12c GO:GO:0005829 GO:GO:0005524
            GO:GO:0007346 GO:GO:0005635 EMBL:CU329671 GenomeReviews:CU329671_GR
            GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 KO:K03066
            OMA:TEILRIH EMBL:U02280 PIR:S45176 RefSeq:NP_595870.1
            ProteinModelPortal:P41836 IntAct:P41836 STRING:P41836 PRIDE:P41836
            EnsemblFungi:SPBC23G7.12c.1 GeneID:2540487 KEGG:spo:SPBC23G7.12c
            OrthoDB:EOG44N21J NextBio:20801614 Uniprot:P41836
        Length = 403

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 81/168 (48%), Positives = 116/168 (69%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGA-DREVQRILMELLNQMDGFDQTVN 59
             MVR++F +A+E+AP+IIF+DE+D+I ++R D+  G+ D EVQR ++ELLNQ+DGF+ T N
Sbjct:   226 MVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKN 285

Query:    60 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYV 114
             +KVIMATNR D LDPALLRPGR+DRKIEFP P    +  + +     MNL+  +DL+   
Sbjct:   286 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIA 345

Query:   115 SRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDT 162
              + +  S AE+  +C EAGM A+R+ R  +  +DFE      + K D+
Sbjct:   346 EKMNGASGAELKGVCTEAGMFALRERRVHVTQEDFELAVAKVLNKGDS 393


>WB|WBGene00004506 [details] [associations]
            symbol:rpt-6 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
            [GO:0007091 "metaphase/anaphase transition of mitotic cell cycle"
            evidence=IMP] [GO:0008340 "determination of adult lifespan"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
            GO:GO:0005737 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
            GO:GO:0040011 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111 EMBL:Z98866
            GO:GO:0007091 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03066 GeneTree:ENSGT00550000074947
            PIR:T27048 RefSeq:NP_499609.1 ProteinModelPortal:Q9XTT9 SMR:Q9XTT9
            DIP:DIP-27139N IntAct:Q9XTT9 MINT:MINT-210855 STRING:Q9XTT9
            PaxDb:Q9XTT9 EnsemblMetazoa:Y49E10.1.1 EnsemblMetazoa:Y49E10.1.2
            GeneID:176661 KEGG:cel:CELE_Y49E10.1 UCSC:Y49E10.1 CTD:176661
            WormBase:Y49E10.1 InParanoid:Q9XTT9 OMA:IDDQIRE NextBio:893504
            Uniprot:Q9XTT9
        Length = 416

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 77/155 (49%), Positives = 111/155 (71%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+E+AP+IIF+DE+D+I ++R +  +G D EVQR ++ELLNQ+DGF+ T N+
Sbjct:   240 MVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNI 299

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR D LDPALLRPGR+DRKIEFP PD + +  + +     MNL   +++     
Sbjct:   300 KVIMATNRIDILDPALLRPGRIDRKIEFPAPDEKARADILKIHSRKMNLMRGINMAKIAE 359

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
             +    S AE+ ++C EAGM A+R+ R  +  +DFE
Sbjct:   360 QIPGASGAEVKSVCTEAGMFALRERRIHVTQEDFE 394


>ASPGD|ASPL0000010049 [details] [associations]
            symbol:AN4236 species:162425 "Emericella nidulans"
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0070682 "proteasome
            regulatory particle assembly" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 EMBL:BN001302 GO:GO:0030163
            GO:GO:0017111 EMBL:AACD01000068 eggNOG:COG1222 TIGRFAMs:TIGR01242
            KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP OrthoDB:EOG40VZZ2
            RefSeq:XP_661840.1 ProteinModelPortal:Q5B5E4 STRING:Q5B5E4
            EnsemblFungi:CADANIAT00004422 GeneID:2873654 KEGG:ani:AN4236.2
            Uniprot:Q5B5E4
        Length = 465

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 83/173 (47%), Positives = 109/173 (63%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE AP+IIFIDE+DA+ T RFD++   DREVQR ++ELLNQ+DGF     +
Sbjct:   292 LVRDCFALAKEKAPSIIFIDELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRI 351

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KV+ ATNR D LDPALLR GRLDRKIEFPLP+   +  + Q     M + D V+  +   
Sbjct:   352 KVLAATNRVDVLDPALLRSGRLDRKIEFPLPNEEARANILQIHSRKMTVEDSVNWAELAR 411

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY-RTNVKKPDTDFEFY 167
               D+   A++ A+C EAGM A+RK    I  +++         KK DT+   Y
Sbjct:   412 STDEFGGAQLKAVCVEAGMIALRKGHSKIGHENYVDAIAEVQAKKKDTNMGIY 464


>FB|FBgn0020369 [details] [associations]
            symbol:Rpt6 "Regulatory particle triple-A ATPase 6"
            species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0004175
            "endopeptidase activity" evidence=IDA;NAS] [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0005838
            "proteasome regulatory particle" evidence=ISS;IDA;NAS] [GO:0000502
            "proteasome complex" evidence=NAS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=NAS] [GO:0006508 "proteolysis"
            evidence=ISS;IDA;NAS] [GO:0016887 "ATPase activity" evidence=NAS]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005875
            "microtubule associated complex" evidence=IDA] [GO:0006974
            "response to DNA damage stimulus" evidence=IMP] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005875 EMBL:AE014298
            GO:GO:0006508 GO:GO:0006974 GO:GO:0016887 GO:GO:0004175
            GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540
            BRENDA:3.4.25.1 KO:K03066 OMA:QNIKVIM GeneTree:ENSGT00550000074947
            EMBL:U97538 EMBL:AF043734 EMBL:AY051732 RefSeq:NP_608447.1
            UniGene:Dm.2162 ProteinModelPortal:O18413 SMR:O18413 DIP:DIP-20087N
            IntAct:O18413 MINT:MINT-759582 STRING:O18413 PaxDb:O18413
            PRIDE:O18413 EnsemblMetazoa:FBtr0077189 GeneID:33105
            KEGG:dme:Dmel_CG1489 CTD:33105 FlyBase:FBgn0020369
            InParanoid:O18413 OrthoDB:EOG47D7XJ PhylomeDB:O18413
            GenomeRNAi:33105 NextBio:781933 Bgee:O18413 GermOnline:CG1489
            Uniprot:O18413
        Length = 405

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 79/168 (47%), Positives = 116/168 (69%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+E+AP+IIF+DE+D+I ++R ++ +G D EVQR ++ELLNQ+DGF+ T N+
Sbjct:   229 MVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNI 288

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR D LDPALLRPGR+DRKIEFP P+   +  + +     MNL+  ++L     
Sbjct:   289 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 348

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD 163
                  S AE+  +C EAGM+A+R+ R  +  +DFE      V + D++
Sbjct:   349 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV-AKVMQKDSE 395


>WB|WBGene00004505 [details] [associations]
            symbol:rpt-5 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
            larval development" evidence=IMP] [GO:0008340 "determination of
            adult lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
            GO:GO:0005737 GO:GO:0002119 GO:GO:0000003 GO:GO:0030163 HSSP:Q01853
            GO:GO:0017111 GeneTree:ENSGT00560000077230 EMBL:FO080337
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
            OMA:GALMYGP PIR:T33155 RefSeq:NP_491672.1 ProteinModelPortal:O76371
            SMR:O76371 IntAct:O76371 MINT:MINT-211164 STRING:O76371
            PaxDb:O76371 EnsemblMetazoa:F56H1.4.1 EnsemblMetazoa:F56H1.4.2
            GeneID:172238 KEGG:cel:CELE_F56H1.4 UCSC:F56H1.4.2 CTD:172238
            WormBase:F56H1.4 InParanoid:O76371 NextBio:874627 Uniprot:O76371
        Length = 430

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 82/154 (53%), Positives = 106/154 (68%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE APAIIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF    ++
Sbjct:   258 LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNDDI 317

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR D LDPALLR GRLDRKIE P P+   +  + Q     MN++ +V+ E+   
Sbjct:   318 KVIAATNRIDVLDPALLRSGRLDRKIELPHPNEDARARIMQIHSRKMNVNKDVNFEELAR 377

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 149
               D  + A+  A+C EAGM A+R++   IL +DF
Sbjct:   378 CTDDFNGAQCKAVCVEAGMIALRRDATEILHEDF 411


>UNIPROTKB|O76371 [details] [associations]
            symbol:rpt-5 "Protein RPT-5" species:6239 "Caenorhabditis
            elegans" [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0008340 GO:GO:0009792 GO:GO:0005737
            GO:GO:0002119 GO:GO:0000003 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111
            GeneTree:ENSGT00560000077230 EMBL:FO080337 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP
            PIR:T33155 RefSeq:NP_491672.1 ProteinModelPortal:O76371 SMR:O76371
            IntAct:O76371 MINT:MINT-211164 STRING:O76371 PaxDb:O76371
            EnsemblMetazoa:F56H1.4.1 EnsemblMetazoa:F56H1.4.2 GeneID:172238
            KEGG:cel:CELE_F56H1.4 UCSC:F56H1.4.2 CTD:172238 WormBase:F56H1.4
            InParanoid:O76371 NextBio:874627 Uniprot:O76371
        Length = 430

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 82/154 (53%), Positives = 106/154 (68%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE APAIIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF    ++
Sbjct:   258 LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNDDI 317

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR D LDPALLR GRLDRKIE P P+   +  + Q     MN++ +V+ E+   
Sbjct:   318 KVIAATNRIDVLDPALLRSGRLDRKIELPHPNEDARARIMQIHSRKMNVNKDVNFEELAR 377

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 149
               D  + A+  A+C EAGM A+R++   IL +DF
Sbjct:   378 CTDDFNGAQCKAVCVEAGMIALRRDATEILHEDF 411


>FB|FBgn0028685 [details] [associations]
            symbol:Rpt4 "Regulatory particle triple-A ATPase 4"
            species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0006508
            "proteolysis" evidence=ISS;IDA] [GO:0004175 "endopeptidase
            activity" evidence=IDA] [GO:0005838 "proteasome regulatory
            particle" evidence=ISS;IDA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005875 "microtubule associated
            complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:1901838 "positive regulation of transcription of nuclear large
            rRNA transcript from RNA polymerase I promoter" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0001163 "RNA polymerase I
            regulatory region sequence-specific DNA binding" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 GO:GO:0005875 GO:GO:0022008
            GO:GO:0006508 GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 HSSP:Q01853
            TIGRFAMs:TIGR01242 GO:GO:0008540 EMBL:AY071182
            ProteinModelPortal:Q8SZ19 SMR:Q8SZ19 IntAct:Q8SZ19 STRING:Q8SZ19
            PRIDE:Q8SZ19 FlyBase:FBgn0028685 InParanoid:Q8SZ19
            OrthoDB:EOG43TX9X ChiTaRS:Rpt4 ArrayExpress:Q8SZ19 Bgee:Q8SZ19
            Uniprot:Q8SZ19
        Length = 397

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 80/173 (46%), Positives = 114/173 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  A+++ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQMDGFD    V
Sbjct:   222 LIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQV 281

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVS 115
             K+IMATNR D+LDPALLRPGRLDRKIE PLP+ + +  + +++        E+D E  V 
Sbjct:   282 KMIMATNRPDSLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVK 341

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEF 166
               D  + A++  +C EAG+ A+R  R  ++  DF K  R  ++ KK ++  ++
Sbjct:   342 LSDNFNGADLRNVCTEAGLFAIRAEREYVIQGDFMKAVRKVSDNKKLESKLDY 394


>TAIR|locus:2159996 [details] [associations]
            symbol:RPT4A "regulatory particle triple-A ATPase 4A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0005618 "cell wall" evidence=IDA] [GO:0000502 "proteasome
            complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0051788 "response to misfolded protein"
            evidence=RCA] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618 GO:GO:0030163
            GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AB008264 KO:K03064
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            EMBL:AF123393 EMBL:AF372945 EMBL:AY078040 EMBL:AK220732
            IPI:IPI00547512 RefSeq:NP_199115.1 UniGene:At.6532
            ProteinModelPortal:Q9SEI3 SMR:Q9SEI3 IntAct:Q9SEI3 STRING:Q9SEI3
            PaxDb:Q9SEI3 PRIDE:Q9SEI3 EnsemblPlants:AT5G43010.1 GeneID:834316
            KEGG:ath:AT5G43010 GeneFarm:2749 TAIR:At5g43010 InParanoid:Q9SEI3
            OMA:NAPFDPE PhylomeDB:Q9SEI3 ProtClustDB:CLSN2679874 Uniprot:Q9SEI3
        Length = 399

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 81/173 (46%), Positives = 113/173 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  A+E+ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQ+DGFD    V
Sbjct:   220 LIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDNLGKV 279

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR D LDPALLRPGRLDRKIE PLP+ + +  + +++ +      E+D E  V 
Sbjct:   280 KMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVK 339

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEF 166
               +  + A++  IC EAGM A+R  R  ++ +DF K  R  +  KK ++   +
Sbjct:   340 LAEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRKLSEAKKLESSSHY 392


>DICTYBASE|DDB_G0284517 [details] [associations]
            symbol:psmC6 "26S protease regulatory subunit S10B"
            species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 dictyBase:DDB_G0284517
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GenomeReviews:CM000153_GR
            GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 GO:GO:0017111
            EMBL:AAFI02000066 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            RefSeq:XP_638541.1 ProteinModelPortal:Q54PJ1 STRING:Q54PJ1
            EnsemblProtists:DDB0232968 GeneID:8624634 KEGG:ddi:DDB_G0284517
            OMA:HAANITK ProtClustDB:CLSZ2429012 Uniprot:Q54PJ1
        Length = 393

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 82/175 (46%), Positives = 113/175 (64%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  A+++ P +IF+DE+DAI   RF   T ADRE+QR LMELLNQMDGFD    V
Sbjct:   218 VIREMFGYARDHQPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLSKV 277

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR D LDPALLRPGRLDRKIE PLP+   +  V +++ ++     +VD E    
Sbjct:   278 KIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIAK 337

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT--NVKKPDTDFEFYK 168
               D  +AA++  +C EAGM A+R  R  ++ +DF K  R     KK +   ++ K
Sbjct:   338 LADGFNAADLRNVCTEAGMFAIRAERDYVMEEDFMKAVRKCQEAKKLEGKLDYQK 392


>FB|FBgn0028684 [details] [associations]
            symbol:Rpt5 "Regulatory particle triple-A ATPase 5"
            species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0004175
            "endopeptidase activity" evidence=IDA;NAS] [GO:0005838 "proteasome
            regulatory particle" evidence=ISS;IDA] [GO:0006508 "proteolysis"
            evidence=ISS;IDA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0009987 "cellular process"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR005937 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006508 GO:GO:0016887 GO:GO:0004175
            GO:GO:0030163 HSSP:Q01853 TIGRFAMs:TIGR01242 GO:GO:0008540
            ChiTaRS:PSMC3 FlyBase:FBgn0028684 EMBL:AF134402
            ProteinModelPortal:Q9XZC3 STRING:Q9XZC3 PRIDE:Q9XZC3
            InParanoid:Q9XZC3 ArrayExpress:Q9XZC3 Bgee:Q9XZC3 Uniprot:Q9XZC3
        Length = 431

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 83/172 (48%), Positives = 111/172 (64%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE APAIIFIDE+DAI T RFD++   DREVQR ++ELLNQ++GF  T ++
Sbjct:   260 LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLNGFSSTADI 319

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR D L PALLR GRLDRKIEFP P+   +  + Q     MN+S++V+ E+   
Sbjct:   320 KVIAATNRVDIL-PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSNDVNFEELSR 378

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
               D  + A+  A+C EAGM A+R++   +  +DF         K   +  +Y
Sbjct:   379 STDDFNGAQCKAVCVEAGMIALRRSANSVTHEDFMDAIMEVQAKKKANLNYY 430


>FB|FBgn0036224 [details] [associations]
            symbol:Rpt4R "Regulatory particle triple-A ATPase 4-related"
            species:7227 "Drosophila melanogaster" [GO:0005838 "proteasome
            regulatory particle" evidence=ISS] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:AE014296
            GO:GO:0006200 GO:GO:0006974 GO:GO:0016887 GO:GO:0030163 HSSP:Q01853
            KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            GeneTree:ENSGT00550000074826 EMBL:AY089267 RefSeq:NP_648525.1
            UniGene:Dm.5141 SMR:Q9VTQ9 IntAct:Q9VTQ9 MINT:MINT-869141
            STRING:Q9VTQ9 EnsemblMetazoa:FBtr0076040 GeneID:39351
            KEGG:dme:Dmel_CG7257 UCSC:CG7257-RA CTD:39351 FlyBase:FBgn0036224
            InParanoid:Q9VTQ9 OMA:CAIWTEA OrthoDB:EOG4VT4CM GenomeRNAi:39351
            NextBio:813228 Uniprot:Q9VTQ9
        Length = 398

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 80/159 (50%), Positives = 107/159 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  A+++ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQMDGFD    V
Sbjct:   223 LIREMFAYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDALGQV 282

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             K+IMATNR DTLDPALLRPGRLDRK+E PLP+   +  + +     +N   E+D E  V 
Sbjct:   283 KMIMATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDYEAVVK 342

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154
               D  + A++  IC EAG+ A+R +R  ++ +DF K  R
Sbjct:   343 LSDLFNGADLRNICTEAGLFALRCDREFVIQEDFMKAVR 381


>SGD|S000005643 [details] [associations]
            symbol:RPT5 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0008540
            "proteasome regulatory particle, base subcomplex" evidence=IDA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0016887
            "ATPase activity" evidence=ISS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=IMP] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IMP]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
            "proteasome regulatory particle assembly" evidence=IMP]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            SGD:S000005643 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            EMBL:BK006948 GO:GO:0006511 GO:GO:0017111 EMBL:X90518 EMBL:X94335
            GO:GO:0045899 GeneTree:ENSGT00560000077230 GO:GO:0070682
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
            GO:GO:0008540 PDB:4B4T PDBsum:4B4T OMA:GALMYGP OrthoDB:EOG40VZZ2
            EMBL:X73569 EMBL:Z75025 PIR:S46605 RefSeq:NP_014760.3
            RefSeq:NP_014762.3 ProteinModelPortal:P33297 SMR:P33297
            DIP:DIP-1590N IntAct:P33297 MINT:MINT-383887 STRING:P33297
            PaxDb:P33297 PeptideAtlas:P33297 EnsemblFungi:YOR117W GeneID:854284
            GeneID:854286 KEGG:sce:YOR117W KEGG:sce:YOR119C KO:K07178
            NextBio:976260 Genevestigator:P33297 GermOnline:YOR117W
            Uniprot:P33297
        Length = 434

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 81/172 (47%), Positives = 107/172 (62%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE AP IIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF     V
Sbjct:   262 LVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRV 321

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KV+ ATNR D LDPALLR GRLDRKIEFPLP    +  + Q     M   D+++ ++   
Sbjct:   322 KVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELAR 381

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
               D+ + A++ A+  EAGM A+R  +  +  +DF +G      +      FY
Sbjct:   382 STDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARKSKSVSFY 433


>FB|FBgn0028687 [details] [associations]
            symbol:Rpt1 "Regulatory particle triple-A ATPase 1"
            species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0006508
            "proteolysis" evidence=ISS;IDA] [GO:0004175 "endopeptidase
            activity" evidence=IDA] [GO:0005838 "proteasome regulatory
            particle" evidence=ISS;IDA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0009987 "cellular process"
            evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 EMBL:AE013599 GO:GO:0005524 GO:GO:0005737
            GO:GO:0006508 GO:GO:0006974 GO:GO:0016887 GO:GO:0004175
            GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540
            KO:K03061 OMA:DIRWELI GeneTree:ENSGT00550000074978 HSSP:Q9LCZ4
            EMBL:AF145307 EMBL:AY061606 RefSeq:NP_477473.1 UniGene:Dm.3425
            SMR:Q7KMQ0 IntAct:Q7KMQ0 STRING:Q7KMQ0 EnsemblMetazoa:FBtr0088947
            GeneID:35701 KEGG:dme:Dmel_CG1341 UCSC:CG1341-RA CTD:35701
            FlyBase:FBgn0028687 HOGENOM:HOG000237377 InParanoid:Q7KMQ0
            OrthoDB:EOG4X3FGQ GenomeRNAi:35701 NextBio:794815 Uniprot:Q7KMQ0
        Length = 433

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 81/164 (49%), Positives = 113/164 (68%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     +IF DE+DAI  ARFD   G D EVQR ++EL+NQ+DGFD   N+
Sbjct:   256 MVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 315

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+MATNR DTLDPAL+RPGRLDRK+EF LPD+  +  +F+++   +S E D+  D ++R
Sbjct:   316 KVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLAR 375

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158
               P+  + AEI ++C EAGM A+R  R V   KDF +  +  +K
Sbjct:   376 LCPNS-TGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVKKVIK 418


>WB|WBGene00018991 [details] [associations]
            symbol:F56F11.4 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0040007
            "growth" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0040011 "locomotion" evidence=IMP] [GO:0040017 "positive
            regulation of locomotion" evidence=IMP] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0002119
            GO:GO:0040011 GO:GO:0040017 GO:GO:0040035 GO:GO:0030163 HSSP:Q01853
            GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03066 GeneTree:ENSGT00550000074947
            EMBL:FO081497 RefSeq:NP_741098.1 ProteinModelPortal:Q8MXF1
            SMR:Q8MXF1 STRING:Q8MXF1 PaxDb:Q8MXF1 PRIDE:Q8MXF1
            EnsemblMetazoa:F56F11.4b GeneID:175403 KEGG:cel:CELE_F56F11.4
            UCSC:F56F11.4b CTD:175403 WormBase:F56F11.4b InParanoid:Q8MXF1
            OMA:TITISEN NextBio:888008 ArrayExpress:Q8MXF1 Uniprot:Q8MXF1
        Length = 432

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 76/155 (49%), Positives = 109/155 (70%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+E+AP+IIF+DE+D+I ++R +   G D EVQR ++ELLNQ+DGF+ T N+
Sbjct:   256 MVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSRGGDSEVQRTMLELLNQLDGFEATKNI 315

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR D LD ALLRPGR+DRKIEFP PD + +  + +     MNL   + ++    
Sbjct:   316 KVIMATNRIDILDSALLRPGRIDRKIEFPAPDEKARAQILKIHSRKMNLMRGIRMDKIAE 375

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
             +    S AE+ ++C EAGM A+R+ R  +  +DFE
Sbjct:   376 QIPGASGAEVKSVCTEAGMFALRERRIHVTQEDFE 410


>UNIPROTKB|Q9FXT8 [details] [associations]
            symbol:OsRPT4 "Os02g0199900 protein" species:39947 "Oryza
            sativa Japonica Group" [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 GO:GO:0005618
            GO:GO:0005730 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111 EMBL:AP008208
            EMBL:CM000139 KO:K03064 EMBL:AP004869 TIGRFAMs:TIGR01242
            OMA:EHKEVES GO:GO:0008540 ProtClustDB:CLSN2679874 EMBL:AP004812
            EMBL:AB033536 RefSeq:NP_001046218.1 UniGene:Os.292 IntAct:Q9FXT8
            STRING:Q9FXT8 EnsemblPlants:LOC_Os02g10640.1 GeneID:4328642
            KEGG:osa:4328642 Uniprot:Q9FXT8
        Length = 400

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 80/173 (46%), Positives = 114/173 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  A+++ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQ+DGFD+   V
Sbjct:   221 LIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKV 280

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR D LDPALLRPGRLDRKIE PLP+ + +  V +++ +      E+D E  V 
Sbjct:   281 KMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGEIDYEAVVK 340

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEF 166
               +  + A++  +C EAGM A+R  R  ++ +DF K  R   + KK ++   +
Sbjct:   341 LAEGFNGADLRNVCTEAGMAAIRAERDYVVHEDFMKAVRKLNDAKKLESSAHY 393


>ASPGD|ASPL0000064945 [details] [associations]
            symbol:AN6988 species:162425 "Emericella nidulans"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005635
            "nuclear envelope" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] [GO:0034515 "proteasome
            storage granule" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA] [GO:0070682 "proteasome regulatory particle
            assembly" evidence=IEA] [GO:0006338 "chromatin remodeling"
            evidence=IEA] [GO:0032968 "positive regulation of transcription
            elongation from RNA polymerase II promoter" evidence=IEA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0051091 "positive regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0043433 "negative regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0006289
            "nucleotide-excision repair" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 EMBL:BN001304 GO:GO:0030163 GO:GO:0017111
            EMBL:AACD01000117 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM OrthoDB:EOG44N21J
            RefSeq:XP_664592.1 ProteinModelPortal:Q5AXJ2 STRING:Q5AXJ2
            EnsemblFungi:CADANIAT00000491 GeneID:2869968 KEGG:ani:AN6988.2
            Uniprot:Q5AXJ2
        Length = 389

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 77/166 (46%), Positives = 113/166 (68%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+E+AP+IIF+DE+D+I ++R D+    D EVQR ++ELLNQ+DGF+ T N+
Sbjct:   213 MVRELFVMAREHAPSIIFMDEIDSIGSSRIDSAGSGDSEVQRTMLELLNQLDGFEPTKNI 272

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             K+IMATNR D LDPALLRPGR+DRKIEFP P    +  + +     MNL+  ++L     
Sbjct:   273 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVEARADILRIHSRSMNLTRGINLTKIAE 332

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPD 161
             + +  S AE+  +C EAGM+A+R+ R  +  +DF+      + K D
Sbjct:   333 KMNGCSGAELKGVCTEAGMYALRERRVHVTQEDFDLATAKILNKHD 378


>CGD|CAL0006022 [details] [associations]
            symbol:RPT6 species:5476 "Candida albicans" [GO:0005635
            "nuclear envelope" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] [GO:0034515 "proteasome
            storage granule" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA] [GO:0070682 "proteasome regulatory particle
            assembly" evidence=IEA] [GO:0032968 "positive regulation of
            transcription elongation from RNA polymerase II promoter"
            evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0051091 "positive regulation
            of sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0043433 "negative regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0006289
            "nucleotide-excision repair" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 CGD:CAL0006022
            GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            EMBL:AACQ01000103 eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03066
            RefSeq:XP_714440.1 ProteinModelPortal:Q59Y56 STRING:Q59Y56
            GeneID:3643877 KEGG:cal:CaO19.3593 Uniprot:Q59Y56
        Length = 401

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 75/166 (45%), Positives = 114/166 (68%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+E+AP+IIF+DE+D+I ++R +  +G D EVQR ++ELLNQ+DGF+ + ++
Sbjct:   225 MVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFESSKDI 284

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             K+IMATNR D LDPALLRPGR+DRKIEFP P    +  + +     MNL+  ++L     
Sbjct:   285 KIIMATNRLDILDPALLRPGRIDRKIEFPAPTVAARTDILKIHSRSMNLTRGINLRKIAE 344

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPD 161
             + +  S A++  +C EAGM+A+R+ R  +  +DFE      + K D
Sbjct:   345 KMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVAKVMSKND 390


>SGD|S000005785 [details] [associations]
            symbol:RPT4 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0016887
            "ATPase activity" evidence=ISS] [GO:0045899 "positive regulation of
            RNA polymerase II transcriptional preinitiation complex assembly"
            evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IDA] [GO:0000502 "proteasome
            complex" evidence=IEA] [GO:0070682 "proteasome regulatory particle
            assembly" evidence=IMP] [GO:0030433 "ER-associated protein
            catabolic process" evidence=IMP] [GO:0032968 "positive regulation
            of transcription elongation from RNA polymerase II promoter"
            evidence=IMP] [GO:0006289 "nucleotide-excision repair"
            evidence=IGI] [GO:0019904 "protein domain specific binding"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 SGD:S000005785 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0019904 EMBL:BK006948 GO:GO:0016887
            GO:GO:0030433 GO:GO:0045899 GO:GO:0006289 GO:GO:0032968
            RefSeq:NP_014902.3 GeneID:854433 KEGG:sce:YOR259C KO:K03064
            GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 GeneTree:ENSGT00550000074826 OMA:EHKEVES
            GO:GO:0008540 OrthoDB:EOG40KC79 EMBL:U43720 EMBL:U93262 EMBL:Z75167
            PIR:S67156 RefSeq:NP_014904.3 PDB:4B4T PDBsum:4B4T
            ProteinModelPortal:P53549 SMR:P53549 DIP:DIP-1589N IntAct:P53549
            MINT:MINT-397407 STRING:P53549 PaxDb:P53549 PeptideAtlas:P53549
            EnsemblFungi:YOR259C GeneID:854435 KEGG:sce:YOR261C KO:K03038
            NextBio:976664 Genevestigator:P53549 GermOnline:YOR259C
            Uniprot:P53549
        Length = 437

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 86/175 (49%), Positives = 108/175 (61%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  AKE+ P IIF+DEVDAI   RF   T ADRE+QR LMELL QMDGFD     
Sbjct:   262 IIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQT 321

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR DTLDPALLRPGRLDRK+E PLP+   +  +F+++ +      E D E  V 
Sbjct:   322 KIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVK 381

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEFYK 168
               D  + A+I     EAG  A+R +R  I P D  K  R    VKK +   E+ K
Sbjct:   382 MSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKKLEGTIEYQK 436


>FB|FBgn0039788 [details] [associations]
            symbol:Rpt6R "Regulatory particle triple-A ATPase 6-related"
            species:7227 "Drosophila melanogaster" [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=ISS] [GO:0006508 "proteolysis"
            evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005875 "microtubule associated complex"
            evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            EMBL:AE014297 GO:GO:0005524 GO:GO:0005737 GO:GO:0005875
            GO:GO:0022008 GO:GO:0006200 GO:GO:0016887 GO:GO:0030163 HSSP:Q01853
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03066
            GeneTree:ENSGT00550000074947 EMBL:AY119229 RefSeq:NP_651811.1
            UniGene:Dm.13760 SMR:Q9VA54 IntAct:Q9VA54 MINT:MINT-308887
            STRING:Q9VA54 EnsemblMetazoa:FBtr0085680 GeneID:43635
            KEGG:dme:Dmel_CG2241 UCSC:CG2241-RA CTD:43635 FlyBase:FBgn0039788
            InParanoid:Q9VA54 OMA:NDAYSAG OrthoDB:EOG41JWTK GenomeRNAi:43635
            NextBio:834976 Uniprot:Q9VA54
        Length = 399

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 78/155 (50%), Positives = 109/155 (70%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+E+AP+IIF+DE+D+I +AR +  TG D EVQR ++ELLNQ+DGF+ T N+
Sbjct:   224 MVRELFVMAREHAPSIIFMDEIDSIGSARLETGTG-DSEVQRTMLELLNQLDGFEATKNI 282

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR D LD ALLRPGR+DRKIEFP P+   +  + +     MNL+  ++L     
Sbjct:   283 KVIMATNRIDVLDQALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 342

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
                  S AE+  +C EAGM+A+R+ R  +  +DFE
Sbjct:   343 EMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 377


>GENEDB_PFALCIPARUM|PFL2345c [details] [associations]
            symbol:PFL2345c "tat-binding protein homolog"
            species:5833 "Plasmodium falciparum" [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            [GO:0003712 "transcription cofactor activity" evidence=ISS]
            [GO:0000502 "proteasome complex" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:AE014188
            GO:GO:0006511 HSSP:Q01853 GO:GO:0017111 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM ProtClustDB:CLSZ2429412
            RefSeq:XP_001350873.1 ProteinModelPortal:Q8I4U5 IntAct:Q8I4U5
            MINT:MINT-1544609 PRIDE:Q8I4U5 EnsemblProtists:PFL2345c:mRNA
            GeneID:811521 KEGG:pfa:PFL2345c EuPathDB:PlasmoDB:PF3D7_1248900
            Uniprot:Q8I4U5
        Length = 435

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 83/171 (48%), Positives = 114/171 (66%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+E+AP+IIF+DE+D+I + R + + G D EVQR +MELLNQ+DGF+ T N+
Sbjct:   260 MVRELFVMAREHAPSIIFMDEIDSIGSQRIEGEHG-DSEVQRTMMELLNQLDGFESTQNI 318

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLP--DRRQKRLVF---QMNLSDEVDLEDYVS 115
             KVIM TNR D LD ALLRPGR+DRKIEFP P  + R + L     +MNL   +D+    +
Sbjct:   319 KVIMCTNRIDILDEALLRPGRIDRKIEFPNPNVEARMEILKIHSRKMNLMRGIDMLKIAT 378

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEF 166
               +  S AE+ A+C EAGM A+R+ R  +  +DFE      V K D +  F
Sbjct:   379 DMNNCSGAEVKAVCTEAGMFALRERRVHVTQEDFEMAV-AKVMKQDAEKNF 428


>UNIPROTKB|F1NU79 [details] [associations]
            symbol:PSMC5 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA] [GO:0022624 "proteasome accessory complex"
            evidence=IEA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA]
            [GO:0031531 "thyrotropin-releasing hormone receptor binding"
            evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0045892 "negative regulation
            of transcription, DNA-dependent" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0045892 GO:GO:0043161 GO:GO:0031410
            GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:QNIKVIM
            GeneTree:ENSGT00550000074947 EMBL:AADN02056696 IPI:IPI00574684
            Ensembl:ENSGALT00000000469 Uniprot:F1NU79
        Length = 412

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 78/168 (46%), Positives = 114/168 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+E+AP+IIF+DE+D+I ++R +  +G D EVQR ++ELLNQ+DGF+ T N+
Sbjct:   236 MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNI 295

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR D LD ALLRPGR+DRKIEFP P+   +  + +     MNL+  ++L     
Sbjct:   296 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 355

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD 163
                  S AE+  +C EAGM+A+R+ R  +  +DFE      V + D++
Sbjct:   356 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV-AKVMQKDSE 402


>UNIPROTKB|P62194 [details] [associations]
            symbol:PSMC5 "26S protease regulatory subunit 8"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0000502 "proteasome complex"
            evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=ISS] [GO:0031531 "thyrotropin-releasing
            hormone receptor binding" evidence=ISS] [GO:0008134 "transcription
            factor binding" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0045892 GO:GO:0043161 GO:GO:0031410 GO:GO:0017111
            GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
            EMBL:AF069053 EMBL:BC146195 IPI:IPI00717227 RefSeq:NP_776866.1
            UniGene:Bt.8062 ProteinModelPortal:P62194 SMR:P62194 STRING:P62194
            PRIDE:P62194 Ensembl:ENSBTAT00000028048 GeneID:282015
            KEGG:bta:282015 CTD:5705 GeneTree:ENSGT00550000074947
            InParanoid:P62194 OrthoDB:EOG4MKNGF NextBio:20805880
            ArrayExpress:P62194 GO:GO:0031531 Uniprot:P62194
        Length = 406

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 78/168 (46%), Positives = 114/168 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+E+AP+IIF+DE+D+I ++R +  +G D EVQR ++ELLNQ+DGF+ T N+
Sbjct:   230 MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNI 289

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR D LD ALLRPGR+DRKIEFP P+   +  + +     MNL+  ++L     
Sbjct:   290 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 349

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD 163
                  S AE+  +C EAGM+A+R+ R  +  +DFE      V + D++
Sbjct:   350 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV-AKVMQKDSE 396


>UNIPROTKB|P62195 [details] [associations]
            symbol:PSMC5 "26S protease regulatory subunit 8"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0031595
            "nuclear proteasome complex" evidence=IEA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=IDA] [GO:0000502 "proteasome complex"
            evidence=IDA] [GO:0016887 "ATPase activity" evidence=TAS]
            [GO:0031531 "thyrotropin-releasing hormone receptor binding"
            evidence=IPI] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=NAS] [GO:0008134 "transcription factor
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0043069 "negative regulation of programmed cell
            death" evidence=NAS] [GO:0022624 "proteasome accessory complex"
            evidence=ISS] [GO:0031410 "cytoplasmic vesicle" evidence=IDA]
            [GO:0003712 "transcription cofactor activity" evidence=TAS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
            [GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
            [GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
            [GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
            "M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
            "mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
            and presentation of peptide antigen via MHC class I" evidence=TAS]
            [GO:0002479 "antigen processing and presentation of exogenous
            peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
            evidence=TAS] [GO:0006521 "regulation of cellular amino acid
            metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
            evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
            by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
            reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
            evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
            [GO:0031145 "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
            Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
            Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            EMBL:L38810 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
            GO:GO:0016071 GO:GO:0045892 Reactome:REACT_115566 GO:GO:0045893
            GO:GO:0005654 GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300
            GO:GO:0006977 GO:GO:0042981 GO:GO:0000082 GO:GO:0031410
            GO:GO:0016887 GO:GO:0006366 GO:GO:0043069 GO:GO:0051436
            EMBL:CH471109 GO:GO:0003712 GO:GO:0000216 GO:GO:0000209
            GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
            Reactome:REACT_383 EMBL:AC015651 ChiTaRS:PSMC5 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 KO:K03066
            OMA:QNIKVIM CTD:5705 OrthoDB:EOG4MKNGF EMBL:D44467 EMBL:AK290758
            EMBL:AK291878 EMBL:BC001932 EMBL:BC002367 EMBL:AF035309
            IPI:IPI00023919 PIR:S60343 PIR:S65536 RefSeq:NP_001186092.1
            RefSeq:NP_002796.4 UniGene:Hs.79387 PDB:2KRK PDB:3KW6 PDBsum:2KRK
            PDBsum:3KW6 ProteinModelPortal:P62195 SMR:P62195 IntAct:P62195
            MINT:MINT-5004394 STRING:P62195 PhosphoSite:P62195 DMDM:49065819
            PaxDb:P62195 PRIDE:P62195 DNASU:5705 Ensembl:ENST00000310144
            Ensembl:ENST00000375812 Ensembl:ENST00000580864
            Ensembl:ENST00000581882 GeneID:5705 KEGG:hsa:5705 UCSC:uc002jcb.3
            GeneCards:GC17P061904 HGNC:HGNC:9552 HPA:HPA017871 MIM:601681
            neXtProt:NX_P62195 PharmGKB:PA33897 InParanoid:P62195
            PhylomeDB:P62195 EvolutionaryTrace:P62195 GenomeRNAi:5705
            NextBio:22166 ArrayExpress:P62195 Bgee:P62195 CleanEx:HS_PSMC5
            Genevestigator:P62195 GermOnline:ENSG00000087191 Uniprot:P62195
        Length = 406

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 78/168 (46%), Positives = 114/168 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+E+AP+IIF+DE+D+I ++R +  +G D EVQR ++ELLNQ+DGF+ T N+
Sbjct:   230 MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNI 289

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR D LD ALLRPGR+DRKIEFP P+   +  + +     MNL+  ++L     
Sbjct:   290 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 349

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD 163
                  S AE+  +C EAGM+A+R+ R  +  +DFE      V + D++
Sbjct:   350 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV-AKVMQKDSE 396


>UNIPROTKB|P62197 [details] [associations]
            symbol:PSMC5 "26S protease regulatory subunit 8"
            species:9823 "Sus scrofa" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0008134 "transcription factor binding"
            evidence=ISS] [GO:0000502 "proteasome complex" evidence=ISS]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=ISS] [GO:0031531 "thyrotropin-releasing hormone
            receptor binding" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0045892
            "negative regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0045892 GO:GO:0043161 GO:GO:0031410 GO:GO:0017111
            GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
            GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF GO:GO:0031531
            EMBL:X89718 EMBL:X89719 RefSeq:NP_999148.1 UniGene:Ssc.5451
            ProteinModelPortal:P62197 SMR:P62197 STRING:P62197 PRIDE:P62197
            Ensembl:ENSSSCT00000018819 GeneID:397043 KEGG:ssc:397043 CTD:397043
            Uniprot:P62197
        Length = 406

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 78/168 (46%), Positives = 114/168 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+E+AP+IIF+DE+D+I ++R +  +G D EVQR ++ELLNQ+DGF+ T N+
Sbjct:   230 MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNI 289

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR D LD ALLRPGR+DRKIEFP P+   +  + +     MNL+  ++L     
Sbjct:   290 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 349

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD 163
                  S AE+  +C EAGM+A+R+ R  +  +DFE      V + D++
Sbjct:   350 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV-AKVMQKDSE 396


>UNIPROTKB|Q4RG45 [details] [associations]
            symbol:GSTENG00035021001 "Chromosome 2 SCAF15106, whole
            genome shotgun sequence." species:99883 "Tetraodon nigroviridis"
            [GO:0000502 "proteasome complex" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0008134 "transcription factor binding" evidence=ISS]
            [GO:0031531 "thyrotropin-releasing hormone receptor binding"
            evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0043161 GO:GO:0000502
            GO:GO:0017111 GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0031531 EMBL:CAAE01015106
            ProteinModelPortal:Q4RG45 STRING:Q4RG45 Uniprot:Q4RG45
        Length = 406

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 78/168 (46%), Positives = 114/168 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+E+AP+IIF+DE+D+I ++R +  +G D EVQR ++ELLNQ+DGF+ T N+
Sbjct:   230 MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNI 289

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR D LD ALLRPGR+DRKIEFP P+   +  + +     MNL+  ++L     
Sbjct:   290 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 349

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD 163
                  S AE+  +C EAGM+A+R+ R  +  +DFE      V + D++
Sbjct:   350 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV-AKVMQKDSE 396


>UNIPROTKB|Q6AZU7 [details] [associations]
            symbol:Q6AZU7 "Putative uncharacterized protein"
            species:8355 "Xenopus laevis" [GO:0000502 "proteasome complex"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0008134 "transcription factor
            binding" evidence=ISS] [GO:0031531 "thyrotropin-releasing hormone
            receptor binding" evidence=ISS] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
            GO:GO:0000502 GO:GO:0017111 GO:GO:0008134 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0031531 EMBL:BC077223
            ProteinModelPortal:Q6AZU7 Uniprot:Q6AZU7
        Length = 414

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 78/168 (46%), Positives = 114/168 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+E+AP+IIF+DE+D+I ++R +  +G D EVQR ++ELLNQ+DGF+ T N+
Sbjct:   238 MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNI 297

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR D LD ALLRPGR+DRKIEFP P+   +  + +     MNL+  ++L     
Sbjct:   298 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 357

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD 163
                  S AE+  +C EAGM+A+R+ R  +  +DFE      V + D++
Sbjct:   358 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV-AKVMQKDSE 404


>UNIPROTKB|Q6P380 [details] [associations]
            symbol:psmc5 "Putative uncharacterized protein MGC75584"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0000502
            "proteasome complex" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0008134
            "transcription factor binding" evidence=ISS] [GO:0031531
            "thyrotropin-releasing hormone receptor binding" evidence=ISS]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0043161 GO:GO:0000502 GO:GO:0017111 GO:GO:0008134
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            HOGENOM:HOG000225143 KO:K03066 CTD:5705 OrthoDB:EOG4MKNGF
            GO:GO:0031531 EMBL:BC064153 RefSeq:NP_989358.1 UniGene:Str.3783
            ProteinModelPortal:Q6P380 STRING:Q6P380 GeneID:394988
            KEGG:xtr:394988 Xenbase:XB-GENE-999928 InParanoid:Q6P380
            Uniprot:Q6P380
        Length = 414

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 78/168 (46%), Positives = 114/168 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+E+AP+IIF+DE+D+I ++R +  +G D EVQR ++ELLNQ+DGF+ T N+
Sbjct:   238 MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNI 297

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR D LD ALLRPGR+DRKIEFP P+   +  + +     MNL+  ++L     
Sbjct:   298 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 357

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD 163
                  S AE+  +C EAGM+A+R+ R  +  +DFE      V + D++
Sbjct:   358 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV-AKVMQKDSE 404


>UNIPROTKB|Q8I4U5 [details] [associations]
            symbol:PFL2345c "Tat-binding protein homolog" species:36329
            "Plasmodium falciparum 3D7" [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 EMBL:AE014188 GO:GO:0006511 HSSP:Q01853 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
            ProtClustDB:CLSZ2429412 RefSeq:XP_001350873.1
            ProteinModelPortal:Q8I4U5 IntAct:Q8I4U5 MINT:MINT-1544609
            PRIDE:Q8I4U5 EnsemblProtists:PFL2345c:mRNA GeneID:811521
            KEGG:pfa:PFL2345c EuPathDB:PlasmoDB:PF3D7_1248900 Uniprot:Q8I4U5
        Length = 435

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 83/171 (48%), Positives = 114/171 (66%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+E+AP+IIF+DE+D+I + R + + G D EVQR +MELLNQ+DGF+ T N+
Sbjct:   260 MVRELFVMAREHAPSIIFMDEIDSIGSQRIEGEHG-DSEVQRTMMELLNQLDGFESTQNI 318

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLP--DRRQKRLVF---QMNLSDEVDLEDYVS 115
             KVIM TNR D LD ALLRPGR+DRKIEFP P  + R + L     +MNL   +D+    +
Sbjct:   319 KVIMCTNRIDILDEALLRPGRIDRKIEFPNPNVEARMEILKIHSRKMNLMRGIDMLKIAT 378

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEF 166
               +  S AE+ A+C EAGM A+R+ R  +  +DFE      V K D +  F
Sbjct:   379 DMNNCSGAEVKAVCTEAGMFALRERRVHVTQEDFEMAV-AKVMKQDAEKNF 428


>MGI|MGI:105047 [details] [associations]
            symbol:Psmc5 "protease (prosome, macropain) 26S subunit,
            ATPase 5" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=ISO] [GO:0005102 "receptor binding" evidence=IPI]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005675 "holo TFIIH complex" evidence=ISA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic process"
            evidence=ISO] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=ISO;ISA] [GO:0008233
            "peptidase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
            [GO:0017025 "TBP-class protein binding" evidence=ISO] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0031410 "cytoplasmic vesicle"
            evidence=ISO] [GO:0031531 "thyrotropin-releasing hormone receptor
            binding" evidence=ISO] [GO:0031595 "nuclear proteasome complex"
            evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0045892 "negative regulation
            of transcription, DNA-dependent" evidence=IDA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:105047
            GO:GO:0005524 GO:GO:0005737 GO:GO:0045892 GO:GO:0043161
            GO:GO:0031410 GO:GO:0017111 GO:GO:0008134 GO:GO:0005675
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            KO:K03066 OMA:QNIKVIM CTD:5705 GeneTree:ENSGT00550000074947
            OrthoDB:EOG4MKNGF GO:GO:0031531 EMBL:Z54219 EMBL:AK010505
            EMBL:AK135451 EMBL:AK145703 IPI:IPI00135640 PIR:S61923
            RefSeq:NP_032976.1 UniGene:Mm.272361 ProteinModelPortal:P62196
            SMR:P62196 IntAct:P62196 STRING:P62196 PhosphoSite:P62196
            REPRODUCTION-2DPAGE:IPI00135640 REPRODUCTION-2DPAGE:P62196
            PaxDb:P62196 PRIDE:P62196 Ensembl:ENSMUST00000021049 GeneID:19184
            KEGG:mmu:19184 InParanoid:P62196 NextBio:295882 Bgee:P62196
            Genevestigator:P62196 GermOnline:ENSMUSG00000020708 Uniprot:P62196
        Length = 406

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 78/168 (46%), Positives = 114/168 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+E+AP+IIF+DE+D+I ++R +  +G D EVQR ++ELLNQ+DGF+ T N+
Sbjct:   230 MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNI 289

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR D LD ALLRPGR+DRKIEFP P+   +  + +     MNL+  ++L     
Sbjct:   290 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 349

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD 163
                  S AE+  +C EAGM+A+R+ R  +  +DFE      V + D++
Sbjct:   350 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV-AKVMQKDSE 396


>RGD|708376 [details] [associations]
            symbol:Psmc5 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 5" species:10116 "Rattus norvegicus" [GO:0000502
            "proteasome complex" evidence=ISO;ISS] [GO:0005102 "receptor
            binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm"
            evidence=ISO;ISS] [GO:0006200 "ATP catabolic process" evidence=IDA]
            [GO:0008134 "transcription factor binding" evidence=ISO;ISS]
            [GO:0016887 "ATPase activity" evidence=IDA] [GO:0017025 "TBP-class
            protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
            complex" evidence=ISO;ISS] [GO:0031410 "cytoplasmic vesicle"
            evidence=IEA;ISO] [GO:0031531 "thyrotropin-releasing hormone
            receptor binding" evidence=ISO;ISS] [GO:0031595 "nuclear proteasome
            complex" evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent
            protein catabolic process" evidence=ISO;ISS] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA;ISO]
            [GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:708376 GO:GO:0005524
            GO:GO:0005737 GO:GO:0045892 GO:GO:0043161 GO:GO:0031410
            GO:GO:0016887 GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066
            OMA:QNIKVIM CTD:5705 GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF
            GO:GO:0031531 EMBL:D83521 EMBL:AB000491 EMBL:AB000493 EMBL:BC058462
            IPI:IPI00213587 PIR:T43799 RefSeq:NP_112411.1 UniGene:Rn.10972
            ProteinModelPortal:P62198 SMR:P62198 IntAct:P62198 STRING:P62198
            PhosphoSite:P62198 World-2DPAGE:0004:P62198 PRIDE:P62198
            Ensembl:ENSRNOT00000013997 GeneID:81827 KEGG:rno:81827
            UCSC:RGD:708376 InParanoid:P62198 NextBio:615767
            ArrayExpress:P62198 Genevestigator:P62198
            GermOnline:ENSRNOG00000010038 GO:GO:0031595 Uniprot:P62198
        Length = 406

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 78/168 (46%), Positives = 114/168 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+E+AP+IIF+DE+D+I ++R +  +G D EVQR ++ELLNQ+DGF+ T N+
Sbjct:   230 MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNI 289

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR D LD ALLRPGR+DRKIEFP P+   +  + +     MNL+  ++L     
Sbjct:   290 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 349

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD 163
                  S AE+  +C EAGM+A+R+ R  +  +DFE      V + D++
Sbjct:   350 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV-AKVMQKDSE 396


>TAIR|locus:2147670 [details] [associations]
            symbol:RPT6A "regulatory particle triple-A ATPase 6A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0005886 "plasma membrane" evidence=IDA] [GO:0000502 "proteasome
            complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0030163
            GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AF296836
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            EMBL:AF123395 EMBL:AB044348 EMBL:AY065174 EMBL:BT009668
            IPI:IPI00542662 RefSeq:NP_568389.1 UniGene:At.10507
            ProteinModelPortal:Q9C5U3 SMR:Q9C5U3 IntAct:Q9C5U3 STRING:Q9C5U3
            PaxDb:Q9C5U3 PRIDE:Q9C5U3 EnsemblPlants:AT5G19990.1 GeneID:832121
            KEGG:ath:AT5G19990 TAIR:At5g19990 InParanoid:Q9C5U3 KO:K03066
            OMA:QNIKVIM PhylomeDB:Q9C5U3 ProtClustDB:CLSN2687185 Uniprot:Q9C5U3
        Length = 419

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 80/169 (47%), Positives = 116/169 (68%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTG-ADREVQRILMELLNQMDGFDQTVN 59
             MVR++F +A+E+AP+IIF+DE+D+I +AR ++ +G  D EVQR ++ELLNQ+DGF+ +  
Sbjct:   242 MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK 301

Query:    60 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYV 114
             +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  + +     MNL   +DL+   
Sbjct:   302 IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIA 361

Query:   115 SRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD 163
              + +  S AE+ A+C EAGM A+R+ R  +  +DFE      V K DT+
Sbjct:   362 EKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAV-AKVMKKDTE 409


>TAIR|locus:2147685 [details] [associations]
            symbol:AT5G20000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;TAS]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0000502 "proteasome
            complex" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0030163 GO:GO:0000502 HSSP:Q01853
            GO:GO:0017111 EMBL:AF296836 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03066 ProtClustDB:CLSN2687185
            EMBL:AY039965 EMBL:AY079403 EMBL:AK226206 EMBL:AY087503
            IPI:IPI00530138 RefSeq:NP_197500.1 UniGene:At.51251
            ProteinModelPortal:Q94BQ2 SMR:Q94BQ2 IntAct:Q94BQ2 STRING:Q94BQ2
            PaxDb:Q94BQ2 PRIDE:Q94BQ2 EnsemblPlants:AT5G20000.1 GeneID:832122
            KEGG:ath:AT5G20000 GeneFarm:1515 TAIR:At5g20000 InParanoid:Q94BQ2
            OMA:TEILRIH PhylomeDB:Q94BQ2 Uniprot:Q94BQ2
        Length = 419

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 80/169 (47%), Positives = 116/169 (68%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTG-ADREVQRILMELLNQMDGFDQTVN 59
             MVR++F +A+E+AP+IIF+DE+D+I +AR ++ +G  D EVQR ++ELLNQ+DGF+ +  
Sbjct:   242 MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK 301

Query:    60 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYV 114
             +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  + +     MNL   +DL+   
Sbjct:   302 IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIA 361

Query:   115 SRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD 163
              + +  S AE+ A+C EAGM A+R+ R  +  +DFE      V K DT+
Sbjct:   362 EKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAV-AKVMKKDTE 409


>ZFIN|ZDB-GENE-030131-6547 [details] [associations]
            symbol:psmc5 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 5" species:7955 "Danio rerio" [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0031531
            "thyrotropin-releasing hormone receptor binding" evidence=ISS]
            [GO:0000502 "proteasome complex" evidence=IEA;ISS] [GO:0008134
            "transcription factor binding" evidence=ISS] [GO:0043161
            "proteasomal ubiquitin-dependent protein catabolic process"
            evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-030131-6547 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0043161 GO:GO:0000502 GO:GO:0017111
            GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM CTD:5705
            GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF GO:GO:0031531
            EMBL:CU459020 EMBL:BC078375 IPI:IPI00482097 RefSeq:NP_001003740.1
            UniGene:Dr.75934 STRING:Q6AZC1 Ensembl:ENSDART00000106191
            GeneID:445285 KEGG:dre:445285 InParanoid:Q6AZC1 NextBio:20832032
            Uniprot:Q6AZC1
        Length = 406

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 78/168 (46%), Positives = 114/168 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+E+AP+IIF+DE+D+I ++R +  +G D EVQR ++ELLNQ+DGF+ T N+
Sbjct:   230 MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNI 289

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR D LD ALLRPGR+DRKIEFP P+   +  + +     MNL+  ++L     
Sbjct:   290 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 349

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD 163
                  S AE+  +C EAGM+A+R+ R  +  +DFE      V + D++
Sbjct:   350 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV-AKVMQKDSE 396


>DICTYBASE|DDB_G0276917 [details] [associations]
            symbol:psmC2 "26S proteasome ATPase 2 subunit"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            [GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0000502
            "proteasome complex" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            dictyBase:DDB_G0276917 GO:GO:0005524 GO:GO:0005634 GO:GO:0045335
            GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0000502 GO:GO:0006511
            HSSP:Q9WZ49 EMBL:AAFI02000019 eggNOG:COG1222 TIGRFAMs:TIGR01242
            KO:K03061 RefSeq:XP_642830.1 ProteinModelPortal:Q86JA1
            STRING:Q86JA1 PRIDE:Q86JA1 EnsemblProtists:DDB0232966
            GeneID:8620693 KEGG:ddi:DDB_G0276917 OMA:HIFTIHA
            ProtClustDB:CLSZ2429177 Uniprot:Q86JA1
        Length = 428

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 81/155 (52%), Positives = 108/155 (69%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVRD+F++A+     IIF DEVDAI  ARFD   G D EVQR ++EL+NQ+DGFD   N+
Sbjct:   251 MVRDLFQMARSKKACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 310

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+MATNR DTLDPALLRPGRLDRK+EF LPD   +  +F ++   +S   D+  + ++R
Sbjct:   311 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHIFTIHAKTMSCARDIRFELLAR 370

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 149
               P+  + A+I ++C EAGM A+R  R V+  KDF
Sbjct:   371 LCPNS-TGADIRSVCTEAGMFAIRARRKVVSEKDF 404


>GENEDB_PFALCIPARUM|PF13_0033 [details] [associations]
            symbol:PF13_0033 "26S proteasome regulatory
            subunit, putative" species:5833 "Plasmodium falciparum" [GO:0005838
            "proteasome regulatory particle" evidence=ISS] [GO:0004175
            "endopeptidase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 HSSP:Q01853
            GO:GO:0017111 EMBL:AL844509 KO:K03064 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 OMA:EHKEVES ProtClustDB:CLSZ2429012
            GO:GO:0005838 RefSeq:XP_001349791.1 ProteinModelPortal:Q8IEQ1
            PRIDE:Q8IEQ1 EnsemblProtists:PF13_0033:mRNA GeneID:814012
            KEGG:pfa:PF13_0033 EuPathDB:PlasmoDB:PF3D7_1306400 Uniprot:Q8IEQ1
        Length = 393

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 80/175 (45%), Positives = 113/175 (64%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  AKE+ P IIF+DE+DAI   RF   T ADRE+QR LMELLN +DGF++  NV
Sbjct:   218 IIREMFNYAKEHQPCIIFMDEIDAIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNV 277

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR D LDPAL+RPGRLDRKIE PLP+   +  + +++ +      ++D E    
Sbjct:   278 KIIMATNRPDVLDPALVRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDYESVCR 337

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEFYK 168
               D  + A++  +C EAGM A+R  R  ++ +DF K  R  +  KK +   E+ K
Sbjct:   338 LCDGFNGADLRNVCTEAGMFAIRAMRDYVIEEDFYKAARKISEGKKLEGKIEYEK 392


>UNIPROTKB|J9NWB0 [details] [associations]
            symbol:J9NWB0 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR005937 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242
            GeneTree:ENSGT00550000074818 EMBL:AAEX03014432
            Ensembl:ENSCAFT00000039483 OMA:AGSELIQ Uniprot:J9NWB0
        Length = 436

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 80/162 (49%), Positives = 115/162 (70%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VR+ FR+A+E+AP+I+FIDE+DAI T R+D+ +G +RE+QR ++ELLNQ+DGFD   +V
Sbjct:   264 VVRESFRVAEEHAPSIVFIDEIDAIGTRRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 323

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR  TLDPAL     L  ++  PLPD + K+ +FQ     M L+D+V L D + 
Sbjct:   324 KVIMATNRIKTLDPALSHQAALTGRLS-PLPDEKTKKHIFQIHTSRMTLADDVTL-DLIM 381

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157
               D +S A+I AIC EAG+ A+R++R  +  +DF+K  + NV
Sbjct:   382 AKDDLSGADIKAICTEAGLMALREHRMKVTNEDFKKS-KENV 422


>UNIPROTKB|P46472 [details] [associations]
            symbol:psmc2 "26S protease regulatory subunit 7"
            species:8355 "Xenopus laevis" [GO:0000502 "proteasome complex"
            evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
            GO:GO:0006511 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            KO:K03061 CTD:5701 EMBL:X80157 EMBL:BC054143 PIR:S53709
            RefSeq:NP_001084136.1 UniGene:Xl.57157 ProteinModelPortal:P46472
            GeneID:399327 KEGG:xla:399327 Xenbase:XB-GENE-1000023
            Uniprot:P46472
        Length = 433

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 81/164 (49%), Positives = 111/164 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     +IF DE+DAI  ARFD   G D EVQR ++EL+NQ+DGFD   N+
Sbjct:   256 MVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 315

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  +F+++   +S E D+  + ++R
Sbjct:   316 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 375

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158
               P+  + AEI ++C EAGM A+R  R V   KDF +     +K
Sbjct:   376 LCPNS-TGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVNKVIK 418


>UNIPROTKB|Q8IEQ1 [details] [associations]
            symbol:PF13_0033 "26S proteasome regulatory subunit,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
            "endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
            regulatory particle" evidence=ISS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 HSSP:Q01853 GO:GO:0017111
            EMBL:AL844509 KO:K03064 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            OMA:EHKEVES ProtClustDB:CLSZ2429012 GO:GO:0005838
            RefSeq:XP_001349791.1 ProteinModelPortal:Q8IEQ1 PRIDE:Q8IEQ1
            EnsemblProtists:PF13_0033:mRNA GeneID:814012 KEGG:pfa:PF13_0033
            EuPathDB:PlasmoDB:PF3D7_1306400 Uniprot:Q8IEQ1
        Length = 393

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 80/175 (45%), Positives = 113/175 (64%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  AKE+ P IIF+DE+DAI   RF   T ADRE+QR LMELLN +DGF++  NV
Sbjct:   218 IIREMFNYAKEHQPCIIFMDEIDAIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNV 277

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR D LDPAL+RPGRLDRKIE PLP+   +  + +++ +      ++D E    
Sbjct:   278 KIIMATNRPDVLDPALVRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDYESVCR 337

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEFYK 168
               D  + A++  +C EAGM A+R  R  ++ +DF K  R  +  KK +   E+ K
Sbjct:   338 LCDGFNGADLRNVCTEAGMFAIRAMRDYVIEEDFYKAARKISEGKKLEGKIEYEK 392


>POMBASE|SPAC3A11.12c [details] [associations]
            symbol:rpt5 "19S proteasome regulatory subunit Rpt5
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
            "endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=ISM] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
            cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
            activity" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 PomBase:SPAC3A11.12c GO:GO:0005829 GO:GO:0005524
            GO:GO:0005634 GO:GO:0007346 EMBL:CU329670 GenomeReviews:CU329670_GR
            GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 GO:GO:0008540
            OMA:GALMYGP EMBL:AB012136 PIR:T11634 RefSeq:XP_001713083.1
            ProteinModelPortal:O14126 STRING:O14126 PRIDE:O14126
            EnsemblFungi:SPAC3A11.12c.1 GeneID:3361462 KEGG:spo:SPAC3A11.12c
            OrthoDB:EOG40VZZ2 NextBio:20811506 Uniprot:O14126
        Length = 438

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 82/168 (48%), Positives = 110/168 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE +PAIIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF     V
Sbjct:   266 LVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRV 325

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR DTLDPALLR GRLDRK+EFPLP+   +  + +     M + D+++ E+   
Sbjct:   326 KVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELAR 385

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY-RTNVKKPDT 162
               D+ + A + ++C EAGM A+R+    I  + F  G     ++K  T
Sbjct:   386 STDEYNGAMLKSVCVEAGMIALRQGDTKINHEHFMDGILEVQMRKSKT 433


>SGD|S000003016 [details] [associations]
            symbol:RPT6 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0034515
            "proteasome storage granule" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
            "chromatin remodeling" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IDA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0070682
            "proteasome regulatory particle assembly" evidence=IMP] [GO:0032968
            "positive regulation of transcription elongation from RNA
            polymerase II promoter" evidence=IMP] [GO:0045899 "positive
            regulation of RNA polymerase II transcriptional preinitiation
            complex assembly" evidence=IGI;IMP] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0019904 "protein domain specific binding"
            evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IPI] [GO:0006289 "nucleotide-excision
            repair" evidence=IGI] [GO:0051091 "positive regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IMP] [GO:0043433 "negative regulation of sequence-specific
            DNA binding transcription factor activity" evidence=IMP]
            [GO:0000502 "proteasome complex" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 SGD:S000003016
            GO:GO:0005524 GO:GO:0005634 GO:GO:0019904 GO:GO:0051091
            GO:GO:0043161 EMBL:BK006941 GO:GO:0016887 GO:GO:0006338
            GO:GO:0043433 GO:GO:0045899 GO:GO:0006289 GO:GO:0032968
            GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0034515
            HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03066
            OMA:TEILRIH GeneTree:ENSGT00550000074947 OrthoDB:EOG44N21J
            EMBL:X66400 EMBL:L01626 EMBL:Z72570 EMBL:AY693135 PIR:S64052
            RefSeq:NP_011467.1 ProteinModelPortal:Q01939 SMR:Q01939
            DIP:DIP-979N IntAct:Q01939 MINT:MINT-568023 STRING:Q01939
            PaxDb:Q01939 PeptideAtlas:Q01939 EnsemblFungi:YGL048C GeneID:852834
            KEGG:sce:YGL048C NextBio:972403 Genevestigator:Q01939
            GermOnline:YGL048C Uniprot:Q01939
        Length = 405

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 74/155 (47%), Positives = 109/155 (70%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+E+AP+IIF+DE+D+I + R +   G D EVQR ++ELLNQ+DGF+ + N+
Sbjct:   229 MVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI 288

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             K+IMATNR D LDPALLRPGR+DRKIEFP P    +  + +     MNL+  ++L     
Sbjct:   289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAE 348

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
             + +  S A++  +C EAGM+A+R+ R  +  +DFE
Sbjct:   349 KMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFE 383


>TAIR|locus:2024822 [details] [associations]
            symbol:RPT1A "regulatory particle triple-A 1A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0005886 "plasma membrane" evidence=IDA] [GO:0000502 "proteasome
            complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
            GO:GO:0005886 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 EMBL:AC009324 EMBL:AC024260
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            EMBL:AF123390 EMBL:AY062860 EMBL:BT000069 IPI:IPI00548766
            PIR:G96577 RefSeq:NP_175778.1 UniGene:At.66918
            ProteinModelPortal:Q9SSB5 SMR:Q9SSB5 IntAct:Q9SSB5 STRING:Q9SSB5
            PaxDb:Q9SSB5 PRIDE:Q9SSB5 EnsemblPlants:AT1G53750.1 GeneID:841812
            KEGG:ath:AT1G53750 GeneFarm:2748 TAIR:At1g53750 InParanoid:Q9SSB5
            KO:K03061 OMA:DIRWELI PhylomeDB:Q9SSB5 ProtClustDB:CLSN2682130
            Genevestigator:Q9SSB5 GermOnline:AT1G53750 Uniprot:Q9SSB5
        Length = 426

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 77/155 (49%), Positives = 110/155 (70%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F++A+     I+F DEVDAI  ARFD   G D EVQR ++E++NQ+DGFD   N+
Sbjct:   249 MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 308

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+MATNR DTLDPALLRPGRLDRK+EF LPD   +  +F+++   ++ E D+  + ++R
Sbjct:   309 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLAR 368

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 149
               P+  + A+I ++C EAGM+A+R  R  +  KDF
Sbjct:   369 LCPNS-TGADIRSVCTEAGMYAIRARRKTVTEKDF 402


>DICTYBASE|DDB_G0292382 [details] [associations]
            symbol:psmC5 "HIV TAT binding-protein-related"
            species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006508 "proteolysis"
            evidence=ISS] [GO:0005838 "proteasome regulatory particle"
            evidence=ISS] [GO:0004175 "endopeptidase activity" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000502 "proteasome
            complex" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            dictyBase:DDB_G0292382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GenomeReviews:CM000155_GR GO:GO:0006508 GO:GO:0004175 GO:GO:0030163
            GO:GO:0017111 EMBL:AAFI02000190 eggNOG:COG1222 TIGRFAMs:TIGR01242
            GO:GO:0005838 KO:K03066 EMBL:L16579 PIR:JN0610 RefSeq:XP_629632.1
            ProteinModelPortal:P34124 STRING:P34124 EnsemblProtists:DDB0216230
            GeneID:8628696 KEGG:ddi:DDB_G0292382 OMA:RAALKHE
            ProtClustDB:CLSZ2429412 Uniprot:P34124
        Length = 403

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 79/169 (46%), Positives = 119/169 (70%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGA-DREVQRILMELLNQMDGFDQTVN 59
             MVR++F +A+E+AP+IIF+DE+D+I ++R ++ +G  D EVQR ++ELLNQ+DGF+ T N
Sbjct:   226 MVRELFIMAREHAPSIIFMDEIDSIGSSRGESGSGGGDSEVQRTMLELLNQLDGFESTKN 285

Query:    60 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYV 114
             +KV+M TNR D LDPALLRPGR+DRKIEFP P    +  + +     MNL+  ++L+   
Sbjct:   286 IKVLMCTNRIDILDPALLRPGRIDRKIEFPNPGDAGRLDILKIHSRKMNLTRGINLKKIS 345

Query:   115 SRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD 163
              + +  S AE+ A+C EAGM+A+R+ R  +  +DFE    + V K D++
Sbjct:   346 DKMNGASGAELKAVCTEAGMYALRERRVHVSQEDFEMAV-SKVMKKDSE 393


>UNIPROTKB|E1C4V5 [details] [associations]
            symbol:PSMC2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
            EMBL:AADN02036894 EMBL:AADN02036895 IPI:IPI00602342
            Ensembl:ENSGALT00000013403 ArrayExpress:E1C4V5 Uniprot:E1C4V5
        Length = 424

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 80/164 (48%), Positives = 111/164 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     +IF DE+DAI  ARFD   G D EVQR ++EL+NQ+DGFD   N+
Sbjct:   247 MVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 306

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  +F+++   +S E D+  + ++R
Sbjct:   307 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 366

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158
               P+  + AEI ++C EAGM A+R  R +   KDF +     +K
Sbjct:   367 LCPNS-TGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 409


>UNIPROTKB|F1NFL8 [details] [associations]
            symbol:PSMC2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
            GO:GO:0000502 GO:GO:0006511 TIGRFAMs:TIGR01242 OMA:DIRWELI
            GeneTree:ENSGT00550000074978 EMBL:AADN02036894 EMBL:AADN02036895
            IPI:IPI00821647 Ensembl:ENSGALT00000039595 ArrayExpress:F1NFL8
            Uniprot:F1NFL8
        Length = 432

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 80/164 (48%), Positives = 111/164 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     +IF DE+DAI  ARFD   G D EVQR ++EL+NQ+DGFD   N+
Sbjct:   255 MVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 314

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  +F+++   +S E D+  + ++R
Sbjct:   315 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 374

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158
               P+  + AEI ++C EAGM A+R  R +   KDF +     +K
Sbjct:   375 LCPNS-TGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 417


>UNIPROTKB|Q5E9F9 [details] [associations]
            symbol:PSMC2 "26S protease regulatory subunit 7"
            species:9913 "Bos taurus" [GO:0000932 "cytoplasmic mRNA processing
            body" evidence=ISS] [GO:0022624 "proteasome accessory complex"
            evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=ISS] [GO:0000502 "proteasome complex" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
            GO:GO:0006511 HSSP:Q9WZ49 GO:GO:0000932 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 KO:K03061 OMA:DIRWELI
            EMBL:BT020961 EMBL:BC102391 IPI:IPI00693210 RefSeq:NP_001015639.1
            UniGene:Bt.24017 ProteinModelPortal:Q5E9F9 SMR:Q5E9F9 PRIDE:Q5E9F9
            Ensembl:ENSBTAT00000065774 GeneID:530186 KEGG:bta:530186 CTD:5701
            GeneTree:ENSGT00550000074978 OrthoDB:EOG4RXZ05 NextBio:20875201
            Uniprot:Q5E9F9
        Length = 433

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 80/164 (48%), Positives = 111/164 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     +IF DE+DAI  ARFD   G D EVQR ++EL+NQ+DGFD   N+
Sbjct:   256 MVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 315

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  +F+++   +S E D+  + ++R
Sbjct:   316 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 375

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158
               P+  + AEI ++C EAGM A+R  R +   KDF +     +K
Sbjct:   376 LCPNS-TGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418


>UNIPROTKB|F1PPH7 [details] [associations]
            symbol:PSMC2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0022624 "proteasome accessory complex"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
            GO:GO:0000502 GO:GO:0006511 TIGRFAMs:TIGR01242 KO:K03061
            OMA:DIRWELI CTD:5701 GeneTree:ENSGT00550000074978 EMBL:AAEX03011248
            RefSeq:XP_533103.3 ProteinModelPortal:F1PPH7
            Ensembl:ENSCAFT00000006754 GeneID:475896 KEGG:cfa:475896
            Uniprot:F1PPH7
        Length = 433

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 80/164 (48%), Positives = 111/164 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     +IF DE+DAI  ARFD   G D EVQR ++EL+NQ+DGFD   N+
Sbjct:   256 MVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 315

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  +F+++   +S E D+  + ++R
Sbjct:   316 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 375

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158
               P+  + AEI ++C EAGM A+R  R +   KDF +     +K
Sbjct:   376 LCPNS-TGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418


>UNIPROTKB|B7Z5E2 [details] [associations]
            symbol:PSMC2 "cDNA FLJ52353, highly similar to 26S protease
            regulatory subunit 7" species:9606 "Homo sapiens" [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508
            "proteolysis" evidence=IEA] [GO:0008233 "peptidase activity"
            evidence=IEA] [GO:0022624 "proteasome accessory complex"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
            GO:GO:0030163 GO:GO:0017111 GO:GO:0008233 EMBL:AC004668
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 UniGene:Hs.437366
            HGNC:HGNC:9548 ChiTaRS:PSMC2 EMBL:AC093701 EMBL:AK298821
            IPI:IPI01015219 SMR:B7Z5E2 STRING:B7Z5E2 Ensembl:ENST00000544811
            Uniprot:B7Z5E2
        Length = 296

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 80/164 (48%), Positives = 111/164 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     +IF DE+DAI  ARFD   G D EVQR ++EL+NQ+DGFD   N+
Sbjct:   119 MVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 178

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  +F+++   +S E D+  + ++R
Sbjct:   179 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 238

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158
               P+  + AEI ++C EAGM A+R  R +   KDF +     +K
Sbjct:   239 LCPNS-TGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 281


>UNIPROTKB|P35998 [details] [associations]
            symbol:PSMC2 "26S protease regulatory subunit 7"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
            evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
            [GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            [GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
            transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
            phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
            polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
            mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
            evidence=TAS] [GO:0002474 "antigen processing and presentation of
            peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
            processing and presentation of exogenous peptide antigen via MHC
            class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
            "regulation of cellular amino acid metabolic process" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0016032 "viral reproduction"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
            "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0006200 "ATP catabolic process" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
            Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
            Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005829 GO:GO:0005739 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
            GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0019048
            GO:GO:0005654 GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300
            GO:GO:0006977 GO:GO:0042981 GO:GO:0000082 GO:GO:0016887
            GO:GO:0051436 GO:GO:0000932 EMBL:CH471070 GO:GO:0000216
            GO:GO:0000209 GO:GO:0000084 GO:GO:0031145 GO:GO:0051437
            EMBL:CH236947 GO:GO:0006521 Reactome:REACT_383 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI CTD:5701 EMBL:D11094
            EMBL:AB075520 EMBL:BC002589 IPI:IPI00021435 PIR:S24353
            RefSeq:NP_001191382.1 RefSeq:NP_002794.1 UniGene:Hs.437366
            ProteinModelPortal:P35998 SMR:P35998 DIP:DIP-27554N IntAct:P35998
            MINT:MINT-1163662 STRING:P35998 PhosphoSite:P35998 DMDM:547930
            OGP:P35998 REPRODUCTION-2DPAGE:IPI00021435
            REPRODUCTION-2DPAGE:P35998 PaxDb:P35998 PeptideAtlas:P35998
            PRIDE:P35998 DNASU:5701 Ensembl:ENST00000292644
            Ensembl:ENST00000435765 GeneID:5701 KEGG:hsa:5701 UCSC:uc003vbs.3
            GeneCards:GC07P102984 HGNC:HGNC:9548 HPA:HPA019238 MIM:154365
            neXtProt:NX_P35998 PharmGKB:PA33893 InParanoid:P35998
            PhylomeDB:P35998 ChiTaRS:PSMC2 GenomeRNAi:5701 NextBio:22150
            ArrayExpress:P35998 Bgee:P35998 CleanEx:HS_PSMC2
            Genevestigator:P35998 GermOnline:ENSG00000161057 Uniprot:P35998
        Length = 433

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 80/164 (48%), Positives = 111/164 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     +IF DE+DAI  ARFD   G D EVQR ++EL+NQ+DGFD   N+
Sbjct:   256 MVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 315

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  +F+++   +S E D+  + ++R
Sbjct:   316 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 375

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158
               P+  + AEI ++C EAGM A+R  R +   KDF +     +K
Sbjct:   376 LCPNS-TGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418


>UNIPROTKB|F1SB53 [details] [associations]
            symbol:PSMC2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
            OMA:HIFTIHA EMBL:CU570825 Ensembl:ENSSSCT00000016802 Uniprot:F1SB53
        Length = 475

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 80/164 (48%), Positives = 111/164 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     +IF DE+DAI  ARFD   G D EVQR ++EL+NQ+DGFD   N+
Sbjct:   298 MVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 357

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  +F+++   +S E D+  + ++R
Sbjct:   358 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 417

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158
               P+  + AEI ++C EAGM A+R  R +   KDF +     +K
Sbjct:   418 LCPNS-TGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 460


>UNIPROTKB|I3LJ30 [details] [associations]
            symbol:I3LJ30 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
            Ensembl:ENSSSCT00000030050 OMA:WDLAYEN Uniprot:I3LJ30
        Length = 434

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 80/164 (48%), Positives = 111/164 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     +IF DE+DAI  ARFD   G D EVQR ++EL+NQ+DGFD   N+
Sbjct:   257 MVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 316

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  +F+++   +S E D+  + ++R
Sbjct:   317 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 376

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158
               P+  + AEI ++C EAGM A+R  R +   KDF +     +K
Sbjct:   377 LCPNS-TGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 419


>UNIPROTKB|Q4R4R0 [details] [associations]
            symbol:PSMC2 "26S protease regulatory subunit 7"
            species:9541 "Macaca fascicularis" [GO:0000502 "proteasome complex"
            evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0016887 GO:GO:0006511 HSSP:Q9WZ49
            GO:GO:0000932 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            EMBL:AB169834 ProteinModelPortal:Q4R4R0 SMR:Q4R4R0 PRIDE:Q4R4R0
            Uniprot:Q4R4R0
        Length = 433

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 80/164 (48%), Positives = 111/164 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     +IF DE+DAI  ARFD   G D EVQR ++EL+NQ+DGFD   N+
Sbjct:   256 MVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 315

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  +F+++   +S E D+  + ++R
Sbjct:   316 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 375

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158
               P+  + AEI ++C EAGM A+R  R +   KDF +     +K
Sbjct:   376 LCPNS-TGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418


>MGI|MGI:109555 [details] [associations]
            symbol:Psmc2 "proteasome (prosome, macropain) 26S subunit,
            ATPase 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006200
            "ATP catabolic process" evidence=ISO] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISO]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
            activity" evidence=ISO] [GO:0017025 "TBP-class protein binding"
            evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0022624 "proteasome accessory complex"
            evidence=IDA] [GO:0030163 "protein catabolic process" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            MGI:MGI:109555 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
            GO:GO:0016887 GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            OrthoDB:EOG4RXZ05 ChiTaRS:PSMC2 EMBL:AK005083 EMBL:AK168548
            EMBL:BC005462 EMBL:U61283 IPI:IPI00270326 PIR:S39349
            UniGene:Mm.2462 ProteinModelPortal:P46471 SMR:P46471 IntAct:P46471
            STRING:P46471 PhosphoSite:P46471 REPRODUCTION-2DPAGE:P46471
            SWISS-2DPAGE:P46471 PaxDb:P46471 PRIDE:P46471 InParanoid:P46471
            Bgee:P46471 Genevestigator:P46471 GermOnline:ENSMUSG00000028932
            Uniprot:P46471
        Length = 433

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 80/164 (48%), Positives = 111/164 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     +IF DE+DAI  ARFD   G D EVQR ++EL+NQ+DGFD   N+
Sbjct:   256 MVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 315

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  +F+++   +S E D+  + ++R
Sbjct:   316 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 375

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158
               P+  + AEI ++C EAGM A+R  R +   KDF +     +K
Sbjct:   376 LCPNS-TGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418


>RGD|3428 [details] [associations]
            symbol:Psmc2 "proteasome (prosome, macropain) 26S subunit, ATPase
          2" species:10116 "Rattus norvegicus" [GO:0000502 "proteasome complex"
          evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
          evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
          "nucleus" evidence=IEA;ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
          [GO:0005739 "mitochondrion" evidence=IEA;ISO] [GO:0006200 "ATP
          catabolic process" evidence=ISO] [GO:0006511 "ubiquitin-dependent
          protein catabolic process" evidence=IEA;ISO] [GO:0016887 "ATPase
          activity" evidence=IEA;ISO] [GO:0017025 "TBP-class protein binding"
          evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
          evidence=IEA] [GO:0022624 "proteasome accessory complex"
          evidence=IEA;ISO;ISS] [GO:0030163 "protein catabolic process"
          evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
          InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
          InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
          RGD:3428 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
          GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222 TIGRFAMs:TIGR01242
          HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03061
          CTD:5701 OrthoDB:EOG4RXZ05 EMBL:D50694 EMBL:BC061542 EMBL:U13895
          IPI:IPI00421600 RefSeq:NP_150239.1 UniGene:Rn.1202
          ProteinModelPortal:Q63347 IntAct:Q63347 MINT:MINT-1794034
          STRING:Q63347 PhosphoSite:Q63347 PRIDE:Q63347 GeneID:25581
          KEGG:rno:25581 InParanoid:Q63347 NextBio:607227 Genevestigator:Q63347
          GermOnline:ENSRNOG00000012026 Uniprot:Q63347
        Length = 433

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 80/164 (48%), Positives = 111/164 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     +IF DE+DAI  ARFD   G D EVQR ++EL+NQ+DGFD   N+
Sbjct:   256 MVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 315

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  +F+++   +S E D+  + ++R
Sbjct:   316 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 375

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158
               P+  + AEI ++C EAGM A+R  R +   KDF +     +K
Sbjct:   376 LCPNS-TGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418


>UNIPROTKB|Q63347 [details] [associations]
            symbol:Psmc2 "26S protease regulatory subunit 7"
            species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 RGD:3428 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
            GO:GO:0016887 GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 KO:K03061 CTD:5701 OrthoDB:EOG4RXZ05
            EMBL:D50694 EMBL:BC061542 EMBL:U13895 IPI:IPI00421600
            RefSeq:NP_150239.1 UniGene:Rn.1202 ProteinModelPortal:Q63347
            IntAct:Q63347 MINT:MINT-1794034 STRING:Q63347 PhosphoSite:Q63347
            PRIDE:Q63347 GeneID:25581 KEGG:rno:25581 InParanoid:Q63347
            NextBio:607227 Genevestigator:Q63347 GermOnline:ENSRNOG00000012026
            Uniprot:Q63347
        Length = 433

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 80/164 (48%), Positives = 111/164 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     +IF DE+DAI  ARFD   G D EVQR ++EL+NQ+DGFD   N+
Sbjct:   256 MVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 315

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  +F+++   +S E D+  + ++R
Sbjct:   316 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 375

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158
               P+  + AEI ++C EAGM A+R  R +   KDF +     +K
Sbjct:   376 LCPNS-TGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418


>ZFIN|ZDB-GENE-040426-1327 [details] [associations]
            symbol:psmc2 "proteasome (prosome, macropain) 26S
            subunit, ATPase 2" species:7955 "Danio rerio" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-040426-1327 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
            KO:K03061 OMA:DIRWELI CTD:5701 GeneTree:ENSGT00550000074978
            OrthoDB:EOG4RXZ05 HSSP:Q9LCZ4 EMBL:BX571796 EMBL:BC053187
            IPI:IPI00491385 RefSeq:NP_957260.1 UniGene:Dr.75589 STRING:Q7T3B1
            Ensembl:ENSDART00000019647 GeneID:393941 KEGG:dre:393941
            InParanoid:Q7T3B1 NextBio:20814913 Uniprot:Q7T3B1
        Length = 433

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 80/164 (48%), Positives = 111/164 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     +IF DE+DAI  ARFD   G D EVQR ++EL+NQ+DGFD   N+
Sbjct:   256 MVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 315

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  +F+++   +S E D+  + ++R
Sbjct:   316 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 375

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158
               P+  + AEI ++C EAGM A+R  R +   KDF +     +K
Sbjct:   376 LCPNS-TGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418


>UNIPROTKB|Q2KIW6 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 HSSP:Q9WZ49 KO:K03064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 EMBL:BC112482
            IPI:IPI00707369 RefSeq:NP_001039705.1 UniGene:Bt.22570
            ProteinModelPortal:Q2KIW6 STRING:Q2KIW6 PRIDE:Q2KIW6 GeneID:518637
            KEGG:bta:518637 CTD:5706 HOGENOM:HOG000225143 InParanoid:Q2KIW6
            OrthoDB:EOG408N84 NextBio:20872697 Uniprot:Q2KIW6
        Length = 389

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 79/173 (45%), Positives = 112/173 (64%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  A+++ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQMDGFD    V
Sbjct:   214 LIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRV 273

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR DTLDPALLRPGRLDRKI   LP+ + +  + +++        E+D E  V 
Sbjct:   274 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 333

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEF 166
               D  + A++  +C EAGM A+R +   ++ +DF K  R   + KK ++  ++
Sbjct:   334 LSDGFNGADLGNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDY 386


>CGD|CAL0005827 [details] [associations]
            symbol:RPT4 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IEA] [GO:0019904 "protein domain specific binding"
            evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
            evidence=IEA] [GO:0032968 "positive regulation of transcription
            elongation from RNA polymerase II promoter" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0030433 "ER-associated protein catabolic process" evidence=IEA]
            [GO:0006289 "nucleotide-excision repair" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            CGD:CAL0005827 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 EMBL:AACQ01000055 EMBL:AACQ01000054 KO:K03064
            eggNOG:COG1222 TIGRFAMs:TIGR01242 RefSeq:XP_717345.1
            RefSeq:XP_717434.1 ProteinModelPortal:Q5A6S2 STRING:Q5A6S2
            GeneID:3640859 GeneID:3640966 KEGG:cal:CaO19.482
            KEGG:cal:CaO19.8112 Uniprot:Q5A6S2
        Length = 428

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 86/175 (49%), Positives = 109/175 (62%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  AKE+ P IIF+DEVDAI   RF   T ADRE+QR LMELLNQMDGFD     
Sbjct:   253 LIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLGQT 312

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR DTLDPALLR GRLDRKIE  LP+   +  +F+++ S      E D E  V 
Sbjct:   313 KIIMATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEIFKIHTSKVAKQGEFDFEAAVK 372

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEFYK 168
               D  + A+I  +  EAG  A+R +R  IL  D  K  R   +VKK +   ++ K
Sbjct:   373 MSDGFNGADIRNVVTEAGFFAIRDDRDYILQNDLMKAVRKVADVKKLEGKLDYEK 427


>CGD|CAL0002261 [details] [associations]
            symbol:RPT5 species:5476 "Candida albicans" [GO:0008540
            "proteasome regulatory particle, base subcomplex" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0070682 "proteasome
            regulatory particle assembly" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            CGD:CAL0002261 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 EMBL:AACQ01000086 EMBL:AACQ01000085 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03065 RefSeq:XP_715432.1 RefSeq:XP_715502.1
            ProteinModelPortal:Q5A0X3 STRING:Q5A0X3 GeneID:3642858
            GeneID:3642911 KEGG:cal:CaO19.10635 KEGG:cal:CaO19.3123
            Uniprot:Q5A0X3
        Length = 454

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 81/173 (46%), Positives = 107/173 (61%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE AP IIFIDE+DAI T RFD+    DREVQR ++ELLNQ+DGF     V
Sbjct:   281 LVRDAFALAKEKAPTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFGSDDRV 340

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL------SDEVDLEDYV 114
             KV+ ATNR DTLDPALLR GRLDRKIEFPLP    +  V +++       ++ V+  +  
Sbjct:   341 KVLAATNRVDTLDPALLRSGRLDRKIEFPLPSEEARESVLKIHARKLHCDNNSVNWRELA 400

Query:   115 SRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 167
                D+ + A++ A+  EAGM A+R  + +I  +DF +       +      FY
Sbjct:   401 RSTDEFNGAQLKAVTVEAGMIALRNGKSIIKHEDFVEAISEVQARKSKSVNFY 453


>UNIPROTKB|F1NCS8 [details] [associations]
            symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
            complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242
            GeneTree:ENSGT00550000074826 OMA:EHKEVES EMBL:AADN02004069
            IPI:IPI00570965 Ensembl:ENSGALT00000020277 ArrayExpress:F1NCS8
            Uniprot:F1NCS8
        Length = 403

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 79/173 (45%), Positives = 112/173 (64%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  A+++ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQMDGFD    V
Sbjct:   228 LIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRV 287

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR DTLDPALLRPGRLDRKI   LP+ + +  + +++        E+D E  V 
Sbjct:   288 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 347

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEF 166
               D  + A++  +C EAGM A+R +   ++ +DF K  R   + KK ++  ++
Sbjct:   348 LSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDY 400


>UNIPROTKB|Q5ZKX2 [details] [associations]
            symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
            complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
            OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826 EMBL:AADN02004069
            EMBL:AJ719962 IPI:IPI00820938 RefSeq:NP_001006494.1
            UniGene:Gga.16005 STRING:Q5ZKX2 Ensembl:ENSGALT00000037197
            GeneID:423586 KEGG:gga:423586 InParanoid:Q5ZKX2 NextBio:20826039
            Uniprot:Q5ZKX2
        Length = 389

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 79/173 (45%), Positives = 112/173 (64%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  A+++ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQMDGFD    V
Sbjct:   214 LIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRV 273

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR DTLDPALLRPGRLDRKI   LP+ + +  + +++        E+D E  V 
Sbjct:   274 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 333

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEF 166
               D  + A++  +C EAGM A+R +   ++ +DF K  R   + KK ++  ++
Sbjct:   334 LSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDY 386


>UNIPROTKB|F1MLV1 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242 IPI:IPI00707369
            UniGene:Bt.22570 GeneTree:ENSGT00550000074826 OMA:EHKEVES
            EMBL:DAAA02027846 ProteinModelPortal:F1MLV1 SMR:F1MLV1 PRIDE:F1MLV1
            Ensembl:ENSBTAT00000020886 Uniprot:F1MLV1
        Length = 389

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 79/173 (45%), Positives = 112/173 (64%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  A+++ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQMDGFD    V
Sbjct:   214 LIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRV 273

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR DTLDPALLRPGRLDRKI   LP+ + +  + +++        E+D E  V 
Sbjct:   274 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 333

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEF 166
               D  + A++  +C EAGM A+R +   ++ +DF K  R   + KK ++  ++
Sbjct:   334 LSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDY 386


>UNIPROTKB|J9P1N0 [details] [associations]
            symbol:PSMC6 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074826
            OMA:EHKEVES EMBL:AAEX03016845 Ensembl:ENSCAFT00000019502
            Uniprot:J9P1N0
        Length = 395

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 79/173 (45%), Positives = 112/173 (64%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  A+++ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQMDGFD    V
Sbjct:   220 LIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRV 279

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR DTLDPALLRPGRLDRKI   LP+ + +  + +++        E+D E  V 
Sbjct:   280 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 339

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEF 166
               D  + A++  +C EAGM A+R +   ++ +DF K  R   + KK ++  ++
Sbjct:   340 LSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDY 392


>UNIPROTKB|P62333 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0000502 "proteasome complex" evidence=IDA] [GO:0016887 "ATPase
            activity" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0030674 "protein binding, bridging" evidence=NAS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IC]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            [GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
            transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
            phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
            polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
            mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
            evidence=TAS] [GO:0002474 "antigen processing and presentation of
            peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
            processing and presentation of exogenous peptide antigen via MHC
            class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
            "regulation of cellular amino acid metabolic process" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0016032 "viral reproduction"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
            "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006200 "ATP catabolic process" evidence=TAS] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0005886 "plasma membrane" evidence=IDA] Reactome:REACT_13505
            Reactome:REACT_578 Reactome:REACT_71 Reactome:REACT_21257
            Reactome:REACT_6850 Reactome:REACT_111217 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
            GO:GO:0005886 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
            GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
            GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
            GO:GO:0042981 GO:GO:0000082 GO:GO:0030674 GO:GO:0016887
            EMBL:CH471078 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
            GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
            Reactome:REACT_383 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
            OrthoDB:EOG408N84 EMBL:D78275 EMBL:AF006305 EMBL:BT006843
            EMBL:CR456709 EMBL:AK313670 EMBL:BC005390 IPI:IPI00926977
            PIR:S71316 RefSeq:NP_002797.3 UniGene:Hs.156171
            ProteinModelPortal:P62333 SMR:P62333 DIP:DIP-38150N IntAct:P62333
            MINT:MINT-5001174 STRING:P62333 PhosphoSite:P62333 DMDM:51702772
            REPRODUCTION-2DPAGE:IPI00021926 PaxDb:P62333 PeptideAtlas:P62333
            PRIDE:P62333 DNASU:5706 Ensembl:ENST00000445930 GeneID:5706
            KEGG:hsa:5706 UCSC:uc010tqx.2 GeneCards:GC14P053173
            H-InvDB:HIX0011661 HGNC:HGNC:9553 HPA:HPA042823 MIM:602708
            neXtProt:NX_P62333 PharmGKB:PA33898 InParanoid:P62333
            PhylomeDB:P62333 GenomeRNAi:5706 NextBio:22170 Bgee:P62333
            CleanEx:HS_PSMC6 Genevestigator:P62333 GermOnline:ENSG00000100519
            Uniprot:P62333
        Length = 389

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 79/173 (45%), Positives = 112/173 (64%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  A+++ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQMDGFD    V
Sbjct:   214 LIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRV 273

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR DTLDPALLRPGRLDRKI   LP+ + +  + +++        E+D E  V 
Sbjct:   274 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 333

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEF 166
               D  + A++  +C EAGM A+R +   ++ +DF K  R   + KK ++  ++
Sbjct:   334 LSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDY 386


>UNIPROTKB|F1SFE6 [details] [associations]
            symbol:PSMC6 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
            [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064
            TIGRFAMs:TIGR01242 CTD:5706 GeneTree:ENSGT00550000074826
            OMA:EHKEVES EMBL:CU407115 RefSeq:XP_001928782.2 UniGene:Ssc.51323
            Ensembl:ENSSSCT00000005554 GeneID:100154148 KEGG:ssc:100154148
            ArrayExpress:F1SFE6 Uniprot:F1SFE6
        Length = 403

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 79/173 (45%), Positives = 112/173 (64%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  A+++ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQMDGFD    V
Sbjct:   228 LIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRV 287

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR DTLDPALLRPGRLDRKI   LP+ + +  + +++        E+D E  V 
Sbjct:   288 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 347

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEF 166
               D  + A++  +C EAGM A+R +   ++ +DF K  R   + KK ++  ++
Sbjct:   348 LSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDY 400


>UNIPROTKB|P62335 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:43179 "Spermophilus tridecemlineatus" [GO:0022624
            "proteasome accessory complex" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826
            OMA:EHKEVES EMBL:U36395 PIR:JC5349 ProteinModelPortal:P62335
            SMR:P62335 PRIDE:P62335 Ensembl:ENSSTOT00000014492 Uniprot:P62335
        Length = 389

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 79/173 (45%), Positives = 112/173 (64%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  A+++ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQMDGFD    V
Sbjct:   214 LIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRV 273

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR DTLDPALLRPGRLDRKI   LP+ + +  + +++        E+D E  V 
Sbjct:   274 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 333

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEF 166
               D  + A++  +C EAGM A+R +   ++ +DF K  R   + KK ++  ++
Sbjct:   334 LSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDY 386


>MGI|MGI:1914339 [details] [associations]
            symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 6" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1914339
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
            OrthoDB:EOG408N84 OMA:EHKEVES EMBL:AK012174 EMBL:AK014354
            EMBL:AK144728 EMBL:AK166961 EMBL:BC043044 EMBL:BC057997
            IPI:IPI00125971 RefSeq:NP_080235.2 UniGene:Mm.18472
            ProteinModelPortal:P62334 SMR:P62334 IntAct:P62334 STRING:P62334
            PhosphoSite:P62334 REPRODUCTION-2DPAGE:IPI00125971
            REPRODUCTION-2DPAGE:P62334 PaxDb:P62334 PRIDE:P62334
            Ensembl:ENSMUST00000022380 GeneID:67089 KEGG:mmu:67089
            InParanoid:P62334 NextBio:323546 Bgee:P62334 Genevestigator:P62334
            GermOnline:ENSMUSG00000021832 Uniprot:P62334
        Length = 389

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 79/173 (45%), Positives = 112/173 (64%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  A+++ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQMDGFD    V
Sbjct:   214 LIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRV 273

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR DTLDPALLRPGRLDRKI   LP+ + +  + +++        E+D E  V 
Sbjct:   274 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 333

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEF 166
               D  + A++  +C EAGM A+R +   ++ +DF K  R   + KK ++  ++
Sbjct:   334 LSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDY 386


>RGD|1308825 [details] [associations]
            symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 6" species:10116 "Rattus norvegicus" [GO:0000502
            "proteasome complex" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005886
            "plasma membrane" evidence=ISO] [GO:0022624 "proteasome accessory
            complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            RGD:1308825 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
            OrthoDB:EOG408N84 RefSeq:NP_001093979.1 UniGene:Rn.103233
            GeneID:289990 KEGG:rno:289990 NextBio:630545 EMBL:BC107950
            IPI:IPI00362105 ProteinModelPortal:Q32PW9 IntAct:Q32PW9
            STRING:Q32PW9 PhosphoSite:Q32PW9 PRIDE:Q32PW9 UCSC:RGD:1308825
            InParanoid:Q32PW9 ArrayExpress:Q32PW9 Genevestigator:Q32PW9
            Uniprot:Q32PW9
        Length = 381

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 79/173 (45%), Positives = 112/173 (64%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  A+++ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQMDGFD    V
Sbjct:   206 LIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRV 265

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR DTLDPALLRPGRLDRKI   LP+ + +  + +++        E+D E  V 
Sbjct:   266 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 325

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEF 166
               D  + A++  +C EAGM A+R +   ++ +DF K  R   + KK ++  ++
Sbjct:   326 LSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDY 378


>RGD|2318218 [details] [associations]
            symbol:LOC100365869 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 6-like" species:10116 "Rattus norvegicus"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:2318218
            GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            EMBL:CH474040 KO:K03064 TIGRFAMs:TIGR01242 CTD:5706
            GeneTree:ENSGT00550000074826 RefSeq:NP_001093979.1
            UniGene:Rn.103233 Ensembl:ENSRNOT00000009649 GeneID:289990
            KEGG:rno:289990 NextBio:630545 Uniprot:G3V6W6
        Length = 403

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 79/173 (45%), Positives = 112/173 (64%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  A+++ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQMDGFD    V
Sbjct:   228 LIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRV 287

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR DTLDPALLRPGRLDRKI   LP+ + +  + +++        E+D E  V 
Sbjct:   288 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 347

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEF 166
               D  + A++  +C EAGM A+R +   ++ +DF K  R   + KK ++  ++
Sbjct:   348 LSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDY 400


>WB|WBGene00004501 [details] [associations]
            symbol:rpt-1 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0009792 "embryo development
            ending in birth or egg hatching" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0002119 GO:GO:0000003
            GO:GO:0016887 GO:GO:0000502 GO:GO:0006511 EMBL:Z78012
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061
            OMA:DIRWELI GeneTree:ENSGT00550000074978 PIR:T20152
            RefSeq:NP_506005.1 ProteinModelPortal:Q18787 SMR:Q18787
            IntAct:Q18787 MINT:MINT-212537 STRING:Q18787 PaxDb:Q18787
            PRIDE:Q18787 EnsemblMetazoa:C52E4.4.1 EnsemblMetazoa:C52E4.4.2
            GeneID:179641 KEGG:cel:CELE_C52E4.4 UCSC:C52E4.4.1 CTD:179641
            WormBase:C52E4.4 InParanoid:Q18787 NextBio:906264 Uniprot:Q18787
        Length = 435

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 80/164 (48%), Positives = 110/164 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     +IF DE+DA+  ARFD   G D EVQR ++EL+NQ+DGFD   N+
Sbjct:   258 MVRELFEMARTKKACLIFFDEIDAVGGARFDDGQGGDNEVQRTMLELINQLDGFDPRGNI 317

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+MATNR DTLDPAL+RPGRLDRK+EF LPD   +  + +++   +S E D+  D ++R
Sbjct:   318 KVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLAR 377

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158
               P+  + AEI ++C EAGM A+R  R V   KDF +     VK
Sbjct:   378 LCPNS-TGAEIRSVCTEAGMFAIRARRKVATEKDFLEAINKVVK 420


>UNIPROTKB|Q18787 [details] [associations]
            symbol:rpt-1 "26S protease regulatory subunit 7"
            species:6239 "Caenorhabditis elegans" [GO:0006200 "ATP catabolic
            process" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            [GO:0000502 "proteasome complex" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0005737
            GO:GO:0002119 GO:GO:0000003 GO:GO:0016887 GO:GO:0000502
            GO:GO:0006511 EMBL:Z78012 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI
            GeneTree:ENSGT00550000074978 PIR:T20152 RefSeq:NP_506005.1
            ProteinModelPortal:Q18787 SMR:Q18787 IntAct:Q18787 MINT:MINT-212537
            STRING:Q18787 PaxDb:Q18787 PRIDE:Q18787 EnsemblMetazoa:C52E4.4.1
            EnsemblMetazoa:C52E4.4.2 GeneID:179641 KEGG:cel:CELE_C52E4.4
            UCSC:C52E4.4.1 CTD:179641 WormBase:C52E4.4 InParanoid:Q18787
            NextBio:906264 Uniprot:Q18787
        Length = 435

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 80/164 (48%), Positives = 110/164 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     +IF DE+DA+  ARFD   G D EVQR ++EL+NQ+DGFD   N+
Sbjct:   258 MVRELFEMARTKKACLIFFDEIDAVGGARFDDGQGGDNEVQRTMLELINQLDGFDPRGNI 317

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+MATNR DTLDPAL+RPGRLDRK+EF LPD   +  + +++   +S E D+  D ++R
Sbjct:   318 KVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLAR 377

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158
               P+  + AEI ++C EAGM A+R  R V   KDF +     VK
Sbjct:   378 LCPNS-TGAEIRSVCTEAGMFAIRARRKVATEKDFLEAINKVVK 420


>UNIPROTKB|Q5R8D7 [details] [associations]
            symbol:PSMC2 "26S protease regulatory subunit 7"
            species:9601 "Pongo abelii" [GO:0000502 "proteasome complex"
            evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0016887 GO:GO:0006511 HSSP:Q01853
            GO:GO:0000932 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            KO:K03061 CTD:5701 EMBL:CR859816 RefSeq:NP_001126144.1
            UniGene:Pab.13078 ProteinModelPortal:Q5R8D7 PRIDE:Q5R8D7
            GeneID:100173102 KEGG:pon:100173102 InParanoid:Q5R8D7
            Uniprot:Q5R8D7
        Length = 433

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 79/164 (48%), Positives = 110/164 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     +IF DE+DAI  ARFD   G D EVQR ++EL+NQ+DGFD   N+
Sbjct:   256 MVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 315

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  + +++   +S E D+  + ++R
Sbjct:   316 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHILKIHARSMSVERDIRFELLAR 375

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158
               P+  + AEI ++C EAGM A+R  R +   KDF +     +K
Sbjct:   376 LCPNS-TGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418


>ZFIN|ZDB-GENE-030131-304 [details] [associations]
            symbol:psmc6 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 6" species:7955 "Danio rerio" [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
            [GO:0006508 "proteolysis" evidence=IEA] [GO:0008233 "peptidase
            activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-030131-304 GO:GO:0005524 GO:GO:0005737
            GO:GO:0006508 GO:GO:0030163 GO:GO:0000502 GO:GO:0017111
            GO:GO:0008233 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
            GeneTree:ENSGT00550000074826 OMA:NAPFDPE EMBL:BX936454
            EMBL:AL954679 EMBL:BC083283 EMBL:BC152260 EMBL:BC155769
            EMBL:AY648827 IPI:IPI00507865 RefSeq:NP_001003832.1
            UniGene:Dr.32860 STRING:Q6DRD2 Ensembl:ENSDART00000053834
            GeneID:321585 KEGG:dre:321585 InParanoid:Q6DRD2 NextBio:20807435
            Uniprot:Q6DRD2
        Length = 389

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 78/173 (45%), Positives = 111/173 (64%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  A+++ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQMDGFD    V
Sbjct:   214 LIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRV 273

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR DTLDPALLRPGRLDRKI   LP+ + +  + +++        ++D E  V 
Sbjct:   274 KMIMATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGDIDYEAIVK 333

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEF 166
               D  + A++  +C EAGM A+R +   +  +DF K  R   + KK ++  ++
Sbjct:   334 LSDGFNGADLRNVCTEAGMFAIRADHEYVTQEDFMKAVRKVADSKKLESKLDY 386


>UNIPROTKB|P46470 [details] [associations]
            symbol:psmc5 "26S protease regulatory subunit 8"
            species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 KO:K03066 CTD:5705 EMBL:X81986 RefSeq:NP_001081635.1
            UniGene:Xl.45 ProteinModelPortal:P46470 PRIDE:P46470 GeneID:397968
            KEGG:xla:397968 Uniprot:P46470
        Length = 461

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 78/168 (46%), Positives = 113/168 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+E+AP+IIF+DE+D+I + R +  +G D EVQR ++ELLNQ+DGF+ T N+
Sbjct:   225 MVRELFVMAREHAPSIIFMDEIDSIGS-RLEGGSGGDSEVQRTMLELLNQLDGFEATKNI 283

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVIMATNR D LD ALLRPGR+DRKIEFP P+   +  + +     MNL+  ++L     
Sbjct:   284 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 343

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD 163
                  S AE+  +C EAGM+A+R+ R  +  +DFE      V + D++
Sbjct:   344 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV-AKVMQKDSE 390


>POMBASE|SPCC1682.16 [details] [associations]
            symbol:rpt4 "19S proteasome regulatory subunit Rpt4
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
            "endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
            cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
            activity" evidence=ISM] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=NAS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            PomBase:SPCC1682.16 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0007346 GO:GO:0043161 EMBL:CU329672 GenomeReviews:CU329672_GR
            GO:GO:0016887 GO:GO:0004175 KO:K03064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 PIR:T41073
            PIR:T41279 RefSeq:NP_587809.2 ProteinModelPortal:O74445
            STRING:O74445 PRIDE:O74445 EnsemblFungi:SPCC1682.16.1
            GeneID:2539189 KEGG:spo:SPCC1682.16 OMA:DKERFIV OrthoDB:EOG40KC79
            NextBio:20800360 Uniprot:O74445
        Length = 388

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 79/175 (45%), Positives = 111/175 (63%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  AKE+ P +IF+DE+DAI   RF   T ADRE+QR LMELLNQMDGFD     
Sbjct:   213 IIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDYLGQT 272

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR DTLDPALLRPGRLDRKIE PLP+   +  + +++L       E+D E  V 
Sbjct:   273 KIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVK 332

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEFYK 168
               D  + A++  +  EAG  A++++R  ++  D     R   ++KK +   ++ K
Sbjct:   333 LTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLKKLEGTIDYQK 387


>ASPGD|ASPL0000032311 [details] [associations]
            symbol:AN5747 species:162425 "Emericella nidulans"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
            "proteasome regulatory particle assembly" evidence=IEA] [GO:0032968
            "positive regulation of transcription elongation from RNA
            polymerase II promoter" evidence=IEA] [GO:0045899 "positive
            regulation of RNA polymerase II transcriptional preinitiation
            complex assembly" evidence=IEA] [GO:0030433 "ER-associated protein
            catabolic process" evidence=IEA] [GO:0006289 "nucleotide-excision
            repair" evidence=IEA] [GO:0019904 "protein domain specific binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 EMBL:BN001305 GO:GO:0030163 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 OMA:EHKEVES
            EnsemblFungi:CADANIAT00003315 Uniprot:C8VFJ3
        Length = 393

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 80/175 (45%), Positives = 109/175 (62%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             ++R++F  AKE+ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQ+DGFD     
Sbjct:   218 LIREMFGYAKEHEPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDYLGKT 277

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVS 115
             K+IMATNR DTLDPALLR GRLDRKIE PLP+   +  + +++ S      ++D E  V 
Sbjct:   278 KIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSSTVQMEGDIDFESVVK 337

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEFYK 168
               D ++ A++  +  EAG+ A++  R  I   DF +  R     KK +   E+ K
Sbjct:   338 MSDGLNGADLRNVVTEAGLFAIKDYRDAINQDDFNRAVRKVAEAKKLEGKLEYQK 392


>CGD|CAL0005689 [details] [associations]
            symbol:RPT1 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
            evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0045899 "positive regulation of RNA
            polymerase II transcriptional preinitiation complex assembly"
            evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 CGD:CAL0005689 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 EMBL:AACQ01000078 EMBL:AACQ01000077
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061
            RefSeq:XP_715876.1 RefSeq:XP_715926.1 ProteinModelPortal:Q5A2A0
            STRING:Q5A2A0 GeneID:3642412 GeneID:3642461 KEGG:cal:CaO19.441
            KEGG:cal:CaO19.8071 Uniprot:Q5A2A0
        Length = 444

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 80/164 (48%), Positives = 109/164 (66%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     IIF DEVDAI  ARFD   G D EVQR ++EL+ Q+DGFD   N+
Sbjct:   267 MVRELFEMARTKKACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNI 326

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+ ATNR +TLDPALLRPGR+DRK+EF LPD   +  +F+++   +S E D+  + +SR
Sbjct:   327 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKTMSVEKDIRWELISR 386

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158
               P+  + AE+ ++C EAGM A+R  R V   KDF K     +K
Sbjct:   387 LCPNA-TGAELRSVCTEAGMFAIRARRKVANEKDFLKAVDKVIK 429


>UNIPROTKB|O42587 [details] [associations]
            symbol:psmc3-a "26S protease regulatory subunit 6A-A"
            species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 CTD:4913 TIGRFAMs:TIGR01242 EMBL:Y10461
            RefSeq:NP_001080249.1 UniGene:Xl.12803 ProteinModelPortal:O42587
            PRIDE:O42587 GeneID:379941 KEGG:xla:379941 Xenbase:XB-GENE-962533
            HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624 Uniprot:O42587
        Length = 405

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 78/144 (54%), Positives = 97/144 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE AP+IIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF   + V
Sbjct:   251 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQV 310

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KVI ATNR D LDPALLR GRLDRKIEFP+P+   +  + Q     MN+S +V+ E+   
Sbjct:   311 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 370

Query:   116 RPDKISAAEIAAICQEAGMHAVRK 139
              P    A        EAGM A+R+
Sbjct:   371 CPTISMALSAKQFGVEAGMIALRR 394


>SGD|S000001628 [details] [associations]
            symbol:RPT1 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0070682 "proteasome
            regulatory particle assembly" evidence=IMP] [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=IDA] [GO:0045732
            "positive regulation of protein catabolic process" evidence=IDA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IPI] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IMP]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000502
            "proteasome complex" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 SGD:S000001628 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 EMBL:BK006944 GO:GO:0006511 GO:GO:0017111
            GO:GO:0045899 GO:GO:0045732 PDB:3VLF PDB:4A3V PDBsum:3VLF
            PDBsum:4A3V GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03061
            OMA:DIRWELI GeneTree:ENSGT00550000074978 OrthoDB:EOG4B01XN
            EMBL:Z22817 EMBL:X73571 EMBL:Z28145 PIR:S34354 RefSeq:NP_012777.1
            ProteinModelPortal:P33299 SMR:P33299 DIP:DIP-2883N IntAct:P33299
            MINT:MINT-612502 STRING:P33299 SWISS-2DPAGE:P33299 PaxDb:P33299
            PeptideAtlas:P33299 PRIDE:P33299 EnsemblFungi:YKL145W GeneID:853712
            KEGG:sce:YKL145W CYGD:YKL145w NextBio:974719 Genevestigator:P33299
            GermOnline:YKL145W Uniprot:P33299
        Length = 467

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 76/158 (48%), Positives = 106/158 (67%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     IIF DE+DA+  ARFD   G D EVQR ++EL+ Q+DGFD   N+
Sbjct:   290 MVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNI 349

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSDEVDLE-----DYVS 115
             KV+ ATNR +TLDPALLRPGR+DRK+EF LPD   +  +F+++ S  + +E     + +S
Sbjct:   350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIH-SKSMSVERGIRWELIS 408

Query:   116 R--PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
             R  P+  + AE+ ++C EAGM A+R  R V   KDF K
Sbjct:   409 RLCPNS-TGAELRSVCTEAGMFAIRARRKVATEKDFLK 445


>GENEDB_PFALCIPARUM|PF13_0063 [details] [associations]
            symbol:PF13_0063 "26S proteasome regulatory
            subunit 7, putative" species:5833 "Plasmodium falciparum"
            [GO:0005838 "proteasome regulatory particle" evidence=ISS]
            [GO:0004175 "endopeptidase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 GO:GO:0004175 GO:GO:0006511
            GO:GO:0017111 EMBL:AL844509 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            GO:GO:0005838 KO:K03061 OMA:DIRWELI ProtClustDB:CLSZ2429177
            RefSeq:XP_001349843.2 ProteinModelPortal:Q8IEK3 IntAct:Q8IEK3
            MINT:MINT-1698409 PRIDE:Q8IEK3 EnsemblProtists:PF13_0063:mRNA
            GeneID:814041 KEGG:pfa:PF13_0063 EuPathDB:PlasmoDB:PF3D7_1311500
            Uniprot:Q8IEK3
        Length = 420

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 73/153 (47%), Positives = 100/153 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F++AK     I+FIDEVDAI  +R D     D EVQR ++E++NQ+DGFD   N+
Sbjct:   243 MVRELFQMAKSKKACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRGNI 302

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KV+MATNR DTLD AL+RPGR+DR+IEF LPD   +  +F+     MN+S +V  E    
Sbjct:   303 KVLMATNRPDTLDSALVRPGRIDRRIEFSLPDLEGRTHIFKIHANTMNMSRDVRFELLAR 362

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKD 148
                  + ++I ++C EAGM A+R  R  I  KD
Sbjct:   363 LCPNSTGSDIRSVCTEAGMFAIRARRKTITEKD 395


>UNIPROTKB|Q8IEK3 [details] [associations]
            symbol:PF13_0063 "26S proteasome regulatory subunit 7,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
            "endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
            regulatory particle" evidence=ISS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 GO:GO:0017111
            EMBL:AL844509 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0005838
            KO:K03061 OMA:DIRWELI ProtClustDB:CLSZ2429177 RefSeq:XP_001349843.2
            ProteinModelPortal:Q8IEK3 IntAct:Q8IEK3 MINT:MINT-1698409
            PRIDE:Q8IEK3 EnsemblProtists:PF13_0063:mRNA GeneID:814041
            KEGG:pfa:PF13_0063 EuPathDB:PlasmoDB:PF3D7_1311500 Uniprot:Q8IEK3
        Length = 420

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 73/153 (47%), Positives = 100/153 (65%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F++AK     I+FIDEVDAI  +R D     D EVQR ++E++NQ+DGFD   N+
Sbjct:   243 MVRELFQMAKSKKACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRGNI 302

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
             KV+MATNR DTLD AL+RPGR+DR+IEF LPD   +  +F+     MN+S +V  E    
Sbjct:   303 KVLMATNRPDTLDSALVRPGRIDRRIEFSLPDLEGRTHIFKIHANTMNMSRDVRFELLAR 362

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKD 148
                  + ++I ++C EAGM A+R  R  I  KD
Sbjct:   363 LCPNSTGSDIRSVCTEAGMFAIRARRKTITEKD 395


>ASPGD|ASPL0000034636 [details] [associations]
            symbol:AN2917 species:162425 "Emericella nidulans"
            [GO:0070682 "proteasome regulatory particle assembly" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IEA] [GO:0045899 "positive regulation of RNA
            polymerase II transcriptional preinitiation complex assembly"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:BN001306
            EMBL:AACD01000051 GO:GO:0030163 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI
            OrthoDB:EOG4B01XN RefSeq:XP_660521.1 ProteinModelPortal:Q5B963
            STRING:Q5B963 EnsemblFungi:CADANIAT00010170 GeneID:2874156
            KEGG:ani:AN2917.2 Uniprot:Q5B963
        Length = 443

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 74/155 (47%), Positives = 103/155 (66%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     IIF DE+DA+  ARFD   G D EVQR ++EL+ Q+DGFD   N+
Sbjct:   266 MVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDARGNI 325

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN---LSDEVDLE-DYVSR 116
             KV+ ATNR  TLDPAL+RPGR+DRKIEF LPD   +  + +++   +S E D+  + +SR
Sbjct:   326 KVMFATNRPSTLDPALMRPGRIDRKIEFSLPDVEGRANILRIHAKSMSVERDIRWELISR 385

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 149
               P+  + AE+ ++  EAGM A+R  R V   KDF
Sbjct:   386 LCPNA-TGAELRSVATEAGMFAIRARRKVATEKDF 419


>POMBASE|SPBC16C6.07c [details] [associations]
            symbol:rpt1 "19S proteasome regulatory subunit Rpt1
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
            "endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
            cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
            activity" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 PomBase:SPBC16C6.07c GO:GO:0005829 GO:GO:0005524
            GO:GO:0005634 GO:GO:0007346 EMBL:CU329671 GenomeReviews:CU329671_GR
            GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 KO:K03061
            OMA:DIRWELI PIR:T39558 RefSeq:NP_596805.1 ProteinModelPortal:O42931
            IntAct:O42931 STRING:O42931 PRIDE:O42931
            EnsemblFungi:SPBC16C6.07c.1 GeneID:2539862 KEGG:spo:SPBC16C6.07c
            OrthoDB:EOG4B01XN NextBio:20801008 Uniprot:O42931
        Length = 438

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 74/164 (45%), Positives = 106/164 (64%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             MVR++F +A+     IIF DE+DAI  ARFD   G D EVQR ++EL+ Q+DGFD   N+
Sbjct:   260 MVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNI 319

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-SDEVDLE---DYVSR 116
             KV+ ATNR +TLD AL+RPGR+DRK+EF LPD   +  + +++  S  +D +   + ++R
Sbjct:   320 KVLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIAR 379

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158
               P + + AE+ ++C EAGM A+R  R V   KDF    +  VK
Sbjct:   380 LCPSQ-TGAELRSVCTEAGMFAIRARRRVATEKDFLDAVQKVVK 422


>MGI|MGI:1927170 [details] [associations]
            symbol:Spata5 "spermatogenesis associated 5" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0007275
            "multicellular organismal development" evidence=IEA] [GO:0007283
            "spermatogenesis" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 MGI:MGI:1927170 GO:GO:0007275
            GO:GO:0005739 GO:GO:0005524 GO:GO:0030154 GO:GO:0007283
            eggNOG:COG0464 HOGENOM:HOG000223225 KO:K14575
            GeneTree:ENSGT00700000104502 GO:GO:0017111 HSSP:Q9WZ49
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692 SMART:SM01073
            CTD:166378 HOVERGEN:HBG108504 OMA:NDIRPSA OrthoDB:EOG43FGWF
            EMBL:AF049099 EMBL:AK011111 EMBL:AK144998 EMBL:AL669927
            EMBL:AL627074 EMBL:AL645968 IPI:IPI00649667 RefSeq:NP_001156983.1
            RefSeq:NP_067318.2 UniGene:Mm.172679 ProteinModelPortal:Q3UMC0
            SMR:Q3UMC0 PhosphoSite:Q3UMC0 PaxDb:Q3UMC0 PRIDE:Q3UMC0
            Ensembl:ENSMUST00000029277 Ensembl:ENSMUST00000108112 GeneID:57815
            KEGG:mmu:57815 UCSC:uc008pau.2 InParanoid:Q3UMC0 NextBio:314006
            Bgee:Q3UMC0 Genevestigator:Q3UMC0 Uniprot:Q3UMC0
        Length = 893

 Score = 318 (117.0 bits), Expect = 2.0e-27, P = 2.0e-27
 Identities = 69/144 (47%), Positives = 96/144 (66%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++FR A+  AP+IIF DE+DA+A  R  + +GA     R+L +LL +MDG +Q  NV 
Sbjct:   709 VREIFRKARAVAPSIIFFDELDALAVER-GSSSGAGNVADRVLAQLLTEMDGIEQLKNVT 767

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR----LVFQ-MNLSDEVDLEDYVSR 116
             V+ ATNR D +D AL+RPGR+DR I  PLPD   +R    L F  M +S+EVDL++ V +
Sbjct:   768 VLAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREILNLQFHSMPISNEVDLDELVLQ 827

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
              D  S AEI A+C+EA + A+ +N
Sbjct:   828 TDTYSGAEIIAVCKEAALLALEEN 851

 Score = 199 (75.1 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 48/144 (33%), Positives = 78/144 (54%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R +F  A    P+IIFIDE+DA+   R  AQ+  ++ V   L+ L++ +        V 
Sbjct:   435 LRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVEKRVVASLLTLMDGIGSEGSEGRVL 494

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQM------NLSDEVDLEDYVS 115
             V+ ATNR   LD AL RPGR D++IE  +P+ + +  + Q       +L  + +L    +
Sbjct:   495 VLGATNRPQALDAALRRPGRFDKEIEIGIPNAQDRLDILQKLLRRVPHLLTKAELLRLAN 554

Query:   116 RPDKISAAEIAAICQEAGMHAVRK 139
                    A++ A+C EAG+HA+R+
Sbjct:   555 NAHGYVGADLKALCNEAGLHALRR 578


>UNIPROTKB|Q8NB90 [details] [associations]
            symbol:SPATA5 "Spermatogenesis-associated protein 5"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0007275 "multicellular organismal development" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030154 "cell
            differentiation" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            GO:GO:0007275 GO:GO:0005739 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030154 GO:GO:0007283 HSSP:Q01853 eggNOG:COG0464
            HOGENOM:HOG000223225 KO:K14575 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 SMART:SM01073 EMBL:AC021205
            EMBL:AF361489 EMBL:AF479656 EMBL:AK091384 EMBL:AC026402
            EMBL:AC097492 EMBL:AC109357 EMBL:BC048217 IPI:IPI00329583
            IPI:IPI00890715 IPI:IPI00890727 RefSeq:NP_660208.2
            UniGene:Hs.709648 ProteinModelPortal:Q8NB90 SMR:Q8NB90
            IntAct:Q8NB90 STRING:Q8NB90 PhosphoSite:Q8NB90 DMDM:308153554
            PaxDb:Q8NB90 PRIDE:Q8NB90 DNASU:166378 Ensembl:ENST00000274008
            GeneID:166378 KEGG:hsa:166378 UCSC:uc003iey.3 UCSC:uc003iez.4
            CTD:166378 GeneCards:GC04P123844 H-InvDB:HIX0022056 HGNC:HGNC:18119
            HPA:HPA036451 MIM:613940 neXtProt:NX_Q8NB90 PharmGKB:PA38294
            HOVERGEN:HBG108504 InParanoid:Q8NB90 OMA:NDIRPSA OrthoDB:EOG43FGWF
            PhylomeDB:Q8NB90 GenomeRNAi:166378 NextBio:88589 Bgee:Q8NB90
            CleanEx:HS_SPATA5 Genevestigator:Q8NB90 Uniprot:Q8NB90
        Length = 893

 Score = 315 (115.9 bits), Expect = 4.3e-27, P = 4.3e-27
 Identities = 70/175 (40%), Positives = 109/175 (62%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR+ FR A+  AP+IIF DE+DA+A  R  +  GA     R+L +LL +MDG +Q  +V 
Sbjct:   709 VRETFRKARAVAPSIIFFDELDALAVER-GSSLGAGNVADRVLAQLLTEMDGIEQLKDVT 767

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             ++ ATNR D +D AL+RPGR+DR I  PLPD   +R +F+     M +S+EVDL++ + +
Sbjct:   768 ILAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREIFKLQFHSMPVSNEVDLDELILQ 827

Query:   117 PDKISAAEIAAICQEAGMHAVRKN--RYVILPKDFEKGYRTNVKK-PDTDFEFYK 168
              D  S AEI A+C+EA + A+ ++    +I+ + F +   T   + P++   FY+
Sbjct:   828 TDAYSGAEIVAVCREAALLALEEDIQANLIMKRHFTQALSTVTPRIPESLRRFYE 882

 Score = 195 (73.7 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 53/148 (35%), Positives = 79/148 (53%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQ-RILMELLNQMDGFDQTVN- 59
             +R +F  A    P+IIFIDE+DA+   R     GA  EV+ R++  LL  MDG    V+ 
Sbjct:   435 LRQIFAEATLRHPSIIFIDELDALCPKR----EGAQNEVEKRVVASLLTLMDGIGSEVSE 490

Query:    60 --VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQM------NLSDEVDLE 111
               V V+ ATNR   LD AL RPGR D++IE  +P+ + +  + Q       +L  E +L 
Sbjct:   491 GQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNAQDRLDILQKLLRRVPHLLTEAELL 550

Query:   112 DYVSRPDKISAAEIAAICQEAGMHAVRK 139
                +       A++  +C EAG+ A+R+
Sbjct:   551 QLANSAHGYVGADLKVLCNEAGLCALRR 578


>UNIPROTKB|E9PKD5 [details] [associations]
            symbol:PSMC3 "26S protease regulatory subunit 6A"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0017111 EMBL:AC090559 HGNC:HGNC:9549 ChiTaRS:PSMC3
            IPI:IPI00978735 ProteinModelPortal:E9PKD5 SMR:E9PKD5 PRIDE:E9PKD5
            Ensembl:ENST00000524447 ArrayExpress:E9PKD5 Bgee:E9PKD5
            Uniprot:E9PKD5
        Length = 294

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 58/84 (69%), Positives = 66/84 (78%)

Query:     1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +VRD F LAKE AP+IIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF     V
Sbjct:   211 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 270

Query:    61 KVIMATNRADTLDPALLRPGRLDR 84
             KVI ATNR D LDPALLR GRLDR
Sbjct:   271 KVIAATNRVDILDPALLRSGRLDR 294


>TIGR_CMR|DET_0391 [details] [associations]
            symbol:DET_0391 "ATP-dependent metalloprotease FtsH"
            species:243164 "Dehalococcoides ethenogenes 195" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
            GO:GO:0004222 GO:GO:0016887 EMBL:CP000027 GenomeReviews:CP000027_GR
            GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
            HOGENOM:HOG000217276 KO:K03798 OMA:LEIIAMR MEROPS:M41.021
            RefSeq:YP_181136.1 ProteinModelPortal:Q3Z9G3 SMR:Q3Z9G3
            STRING:Q3Z9G3 GeneID:3230280 KEGG:det:DET0391 PATRIC:21607849
            ProtClustDB:CLSK837509 BioCyc:DETH243164:GJNF-391-MONOMER
            Uniprot:Q3Z9G3
        Length = 608

 Score = 302 (111.4 bits), Expect = 4.4e-26, P = 4.4e-26
 Identities = 68/165 (41%), Positives = 98/165 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F  AK+NAP IIFIDE+DA+   R     G   E ++ L ++L +MDGFD   +V 
Sbjct:   240 VRDLFDQAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQILVEMDGFDTDTSVI 299

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSR 116
             VI ATNR D LDPALLRPGR DR++    PD   +  + +++     L+D V+LE+   +
Sbjct:   300 VIAATNRPDILDPALLRPGRFDRRVVLDKPDITGREAILKIHAKGKPLADTVNLENLAKQ 359

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPD 161
                 S A++A +  EA + A RKNR V+  +D E+     +  P+
Sbjct:   360 TVGFSGADLANLLNEAAILAARKNRKVVETEDLEESIDRVIAGPE 404


>UNIPROTKB|E2RC37 [details] [associations]
            symbol:SPATA5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 KO:K14575
            GeneTree:ENSGT00700000104502 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 CTD:166378 OMA:NDIRPSA
            EMBL:AAEX03011797 RefSeq:XP_540960.2 ProteinModelPortal:E2RC37
            Ensembl:ENSCAFT00000006393 GeneID:483840 KEGG:cfa:483840
            Uniprot:E2RC37
        Length = 893

 Score = 294 (108.6 bits), Expect = 7.7e-25, P = 7.7e-25
 Identities = 62/144 (43%), Positives = 96/144 (66%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++FR A+  +P+IIF DE+DA+A  R  + +GA     R+L +LL +MDG +Q  +V 
Sbjct:   709 VREIFRKARAVSPSIIFFDELDALAIER-GSSSGAGNVADRVLAQLLTEMDGIEQLKDVT 767

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR----LVFQ-MNLSDEVDLEDYVSR 116
             ++ ATNR D +D AL+RPGR+DR I  PLPD   +R    L F  M +S++V+L++ + +
Sbjct:   768 ILAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREILNLQFHSMPISNDVNLDELIFQ 827

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
              D  S AEI A+C+EA + A+ ++
Sbjct:   828 TDTYSGAEIIAVCREAALLALEED 851

 Score = 202 (76.2 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 58/148 (39%), Positives = 81/148 (54%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQ-RILMELLNQMDGFDQTVN- 59
             +R +F  A    P+IIFIDE+DA+   R     GA  EV+ R++  LL  MDG     + 
Sbjct:   435 LRQIFAEATLRHPSIIFIDELDALCPKR----EGAQNEVEKRVVASLLTLMDGIGSEGSE 490

Query:    60 --VKVIMATNRADTLDPALLRPGRLDRKIEFPLP---DRR---QKRLVFQMNLSDEVDLE 111
               V V+ ATNR   LD AL RPGR D++IE  +P   DR    QK L    +L  EV+L 
Sbjct:   491 GQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNAADRLDILQKLLQRVPHLLTEVELL 550

Query:   112 DYVSRPDKISAAEIAAICQEAGMHAVRK 139
                +       A++ A+C EAG++A+R+
Sbjct:   551 QLANSAHGYVGADLKALCNEAGLYALRR 578


>UNIPROTKB|Q3AFJ8 [details] [associations]
            symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
            species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0000910 "cytokinesis" evidence=ISS] [GO:0004222
            "metalloendopeptidase activity" evidence=ISS] [GO:0006200 "ATP
            catabolic process" evidence=ISS] [GO:0016887 "ATPase activity"
            evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR
            GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
            GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
            HOGENOM:HOG000217276 KO:K03798 RefSeq:YP_359086.1
            ProteinModelPortal:Q3AFJ8 SMR:Q3AFJ8 STRING:Q3AFJ8 MEROPS:M41.021
            GeneID:3726212 KEGG:chy:CHY_0214 PATRIC:21273609 OMA:TGKADDE
            BioCyc:CHYD246194:GJCN-215-MONOMER Uniprot:Q3AFJ8
        Length = 619

 Score = 290 (107.1 bits), Expect = 9.3e-25, P = 9.3e-25
 Identities = 64/165 (38%), Positives = 96/165 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F  AK+NAP I+FIDE+DA+   R     G   E ++ L +LL +MDGF+    + 
Sbjct:   239 VRDLFEQAKKNAPCIVFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFNSNEGII 298

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSR 116
             +I ATNR D LDPALLRPGR DR I    PD   ++ + +++     L D+VDL+    R
Sbjct:   299 IIAATNRPDILDPALLRPGRFDRHIVVDTPDINGRKEILKVHVKGKPLGDDVDLDVLARR 358

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPD 161
                 + A++A +  EA + A R+N+ VI  ++ E+     +  P+
Sbjct:   359 TPGFTGADLANMVNEAALLAARRNKKVINMEEMEEAIERVIAGPE 403


>TIGR_CMR|CHY_0214 [details] [associations]
            symbol:CHY_0214 "cell division protein FtsH"
            species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0000910 "cytokinesis" evidence=ISS] [GO:0004222
            "metalloendopeptidase activity" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005886 GO:GO:0005524 GO:GO:0046872 EMBL:CP000141
            GenomeReviews:CP000141_GR GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465
            TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798
            RefSeq:YP_359086.1 ProteinModelPortal:Q3AFJ8 SMR:Q3AFJ8
            STRING:Q3AFJ8 MEROPS:M41.021 GeneID:3726212 KEGG:chy:CHY_0214
            PATRIC:21273609 OMA:TGKADDE BioCyc:CHYD246194:GJCN-215-MONOMER
            Uniprot:Q3AFJ8
        Length = 619

 Score = 290 (107.1 bits), Expect = 9.3e-25, P = 9.3e-25
 Identities = 64/165 (38%), Positives = 96/165 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F  AK+NAP I+FIDE+DA+   R     G   E ++ L +LL +MDGF+    + 
Sbjct:   239 VRDLFEQAKKNAPCIVFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFNSNEGII 298

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSR 116
             +I ATNR D LDPALLRPGR DR I    PD   ++ + +++     L D+VDL+    R
Sbjct:   299 IIAATNRPDILDPALLRPGRFDRHIVVDTPDINGRKEILKVHVKGKPLGDDVDLDVLARR 358

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPD 161
                 + A++A +  EA + A R+N+ VI  ++ E+     +  P+
Sbjct:   359 TPGFTGADLANMVNEAALLAARRNKKVINMEEMEEAIERVIAGPE 403


>FB|FBgn0036702 [details] [associations]
            symbol:CG6512 species:7227 "Drosophila melanogaster"
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0005783
            "endoplasmic reticulum" evidence=ISS] [GO:0005739 "mitochondrion"
            evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
            evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0016021 "integral to
            membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046331
            "lateral inhibition" evidence=IMP] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005524 EMBL:AE014296
            GO:GO:0008270 GO:GO:0006200 GO:GO:0006508 GO:GO:0004222
            GO:GO:0016887 GO:GO:0030163 GO:GO:0046331
            GeneTree:ENSGT00530000063070 KO:K08956 TIGRFAMs:TIGR01241
            OMA:YSEDTAM HSSP:Q9LCZ4 UniGene:Dm.986 GeneID:39922
            KEGG:dme:Dmel_CG6512 FlyBase:FBgn0036702 GenomeRNAi:39922
            NextBio:816090 EMBL:AY084199 RefSeq:NP_730248.2 SMR:Q8T4G5
            IntAct:Q8T4G5 MINT:MINT-1004758 STRING:Q8T4G5
            EnsemblMetazoa:FBtr0075251 UCSC:CG6512-RA InParanoid:Q8T4G5
            Uniprot:Q8T4G5
        Length = 826

 Score = 286 (105.7 bits), Expect = 4.8e-24, P = 4.8e-24
 Identities = 64/157 (40%), Positives = 98/157 (62%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F +A+++AP I+FIDE+DA+   R     G   E +  L +LL +MDGF+ T NV 
Sbjct:   409 VRDMFAMARKHAPCILFIDEIDAVGRKRGGKTFGGHSEQENTLNQLLVEMDGFNTTTNVV 468

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-EVDLE-DYVSRP-- 117
             V+ ATNR D LD AL+RPGR DR+I  P PD + +  +F+++L + +  L+ + +SR   
Sbjct:   469 VLAATNRVDILDKALMRPGRFDRQIYVPAPDIKGRASIFKVHLGNLKTSLDKNELSRKMA 528

Query:   118 ---DKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
                   + A+IA +C EA + A R ++  I+ K FE+
Sbjct:   529 ALTPGFTGADIANVCNEAALIAARDSKDSIVLKHFEQ 565


>TAIR|locus:2101933 [details] [associations]
            symbol:AtCDC48B "AT3G53230" species:3702 "Arabidopsis
            thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0046686 "response to cadmium ion"
            evidence=IEP] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0045732 "positive
            regulation of protein catabolic process" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005794 GO:GO:0046686 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0005654 GO:GO:0005730 GO:GO:0051301
            GO:GO:0005856 GO:GO:0015031 GO:GO:0007049 eggNOG:COG0464
            GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0045732 GO:GO:0009524 EMBL:AL132958 HOGENOM:HOG000223224
            KO:K13525 ProtClustDB:CLSN2684913 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 EMBL:AK228801 IPI:IPI00520856 PIR:T46169
            RefSeq:NP_190891.1 UniGene:At.23168 ProteinModelPortal:Q9SCN8
            SMR:Q9SCN8 STRING:Q9SCN8 PaxDb:Q9SCN8 PRIDE:Q9SCN8
            EnsemblPlants:AT3G53230.1 GeneID:824489 KEGG:ath:AT3G53230
            GeneFarm:1909 TAIR:At3g53230 InParanoid:Q9SCN8 OMA:DIRRYEE
            PhylomeDB:Q9SCN8 Genevestigator:Q9SCN8 GermOnline:AT3G53230
            Uniprot:Q9SCN8
        Length = 815

 Score = 285 (105.4 bits), Expect = 6.0e-24, P = 6.0e-24
 Identities = 65/165 (39%), Positives = 96/165 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++F  A+++AP ++F DE+D+IAT R ++   A     R+L +LL +MDG +    V 
Sbjct:   563 VREIFDKARQSAPCVLFFDELDSIATQRGNSVGDAGGAADRVLNQLLTEMDGMNAKKTVF 622

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D +DPALLRPGRLD+ I  PLPD   +  +F+  L     + +VDL      
Sbjct:   623 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALAKY 682

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPD 161
                 S A+I  ICQ +  +A+R+N    + KD EK  R   + P+
Sbjct:   683 TQGFSGADITEICQRSCKYAIREN----IEKDIEKE-RKRAESPE 722

 Score = 239 (89.2 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 59/148 (39%), Positives = 89/148 (60%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F  A++NAP+IIFIDE+D+IA  R   +T  + E +RI+ +LL  MDG     +V 
Sbjct:   290 LRKAFEEAEKNAPSIIFIDEIDSIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKSRAHVI 346

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             V+ ATNR +++DPAL R GR DR+I+  +PD   +  V +     M L+++VDLE     
Sbjct:   347 VMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKD 406

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                   A++AA+C EA +  +R+   VI
Sbjct:   407 THGYVGADLAALCTEAALQCIREKMDVI 434


>TIGR_CMR|GSU_1809 [details] [associations]
            symbol:GSU_1809 "cell division protein FtsH"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
            GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030163
            TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
            RefSeq:NP_952859.2 GeneID:2688702 KEGG:gsu:GSU1809 PATRIC:22026473
            ProtClustDB:CLSK828573 BioCyc:GSUL243231:GH27-1860-MONOMER
            Uniprot:Q74C66
        Length = 610

 Score = 281 (104.0 bits), Expect = 8.5e-24, P = 8.5e-24
 Identities = 62/154 (40%), Positives = 92/154 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F   K+NAP IIFIDE+DA+   R     G   E ++ L +LL +MDGF+    V 
Sbjct:   234 VRDLFVQGKKNAPCIIFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFESNEGVI 293

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSR 116
             +I ATNR D LDPALLRPGR DR++  P PD + + ++ +++     L+ +VDL      
Sbjct:   294 LIAATNRPDVLDPALLRPGRFDRQVVVPQPDVKGREMILKVHTKKTPLASDVDLGVIARG 353

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
                 S A+++ +  EA + A RK++  +  KDF+
Sbjct:   354 TPGFSGADLSNVVNEAALLAARKDKSFVEMKDFD 387


>UNIPROTKB|F1N9N5 [details] [associations]
            symbol:AFG3L2 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0008270
            GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
            GeneTree:ENSGT00530000063070 GO:GO:0017111 TIGRFAMs:TIGR01241
            OMA:LYRFVTT EMBL:AADN02058877 EMBL:AADN02058878 EMBL:AADN02058879
            IPI:IPI00683486 Ensembl:ENSGALT00000016639 ArrayExpress:F1N9N5
            Uniprot:F1N9N5
        Length = 635

 Score = 281 (104.0 bits), Expect = 9.4e-24, P = 9.4e-24
 Identities = 66/159 (41%), Positives = 93/159 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F LA++NAP I+FIDE+DA+   R     G   E +  L +LL +MDGF+ T NV 
Sbjct:   233 VRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVV 292

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS----DEVDLEDYVSRP 117
             ++  TNR D LDPAL+RPGR DR+I    PD + +  +F+++L     D V  +D ++R 
Sbjct:   293 ILAGTNRPDILDPALMRPGRFDRQIYIGPPDIKGRASIFKVHLRPLKLDTVLDKDNLARK 352

Query:   118 -----DKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
                     S A+IA +C EA + A R     I  K FE+
Sbjct:   353 LASLTPGFSGADIANVCNEAALIAARHLSDAINQKHFEQ 391


>DICTYBASE|DDB_G0284249 [details] [associations]
            symbol:DDB_G0284249 "peptidase M41, FtsH
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
            "integral to membrane" evidence=IEA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006508 "proteolysis" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0006461 "protein complex assembly" evidence=ISS] [GO:0005739
            "mitochondrion" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0044351 "macropinocytosis" evidence=RCA] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 dictyBase:DDB_G0284249 GO:GO:0016021 GO:GO:0005739
            GO:GO:0005886 GO:GO:0005524 GO:GO:0006461 GO:GO:0046872
            GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
            eggNOG:COG0465 KO:K08956 GO:GO:0017111 TIGRFAMs:TIGR01241
            EMBL:AAFI02000064 RefSeq:XP_638674.1 ProteinModelPortal:Q54PX1
            SMR:Q54PX1 MEROPS:M41.A17 EnsemblProtists:DDB0229917 GeneID:8624503
            KEGG:ddi:DDB_G0284249 InParanoid:Q54PX1 OMA:VSIYGMN
            ProtClustDB:CLSZ2846729 Uniprot:Q54PX1
        Length = 764

 Score = 281 (104.0 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 65/156 (41%), Positives = 97/156 (62%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQ-TGADREVQRILMELLNQMDGFDQTVNV 60
             VRD+F  A++NAP I+FIDE+DA+  AR     +G++ E +  L +LL +MDGF    NV
Sbjct:   383 VRDLFEQARKNAPCIVFIDEIDAVGRARGKGGFSGSNDERENTLNQLLVEMDGFKPLKNV 442

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSDEV-DLE-DYVSRPD 118
              V+ ATNR D LD ALLRPGR DR+I    PD + +  +F+++L+  + D   +Y  R  
Sbjct:   443 VVLAATNRPDILDKALLRPGRFDRQITIDNPDLKSREEIFRVHLAALLLDKSINYAERLS 502

Query:   119 KI----SAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
             K+    S A+IA +C EA + A R++  +I  + F+
Sbjct:   503 KLTPGFSGADIANVCNEAALIAARRHAEIITLEHFD 538


>MGI|MGI:1916847 [details] [associations]
            symbol:Afg3l2 "AFG3(ATPase family gene 3)-like 2 (yeast)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0005743 "mitochondrial inner
            membrane" evidence=IDA] [GO:0006508 "proteolysis" evidence=IEA]
            [GO:0007005 "mitochondrion organization" evidence=IGI] [GO:0007409
            "axonogenesis" evidence=IMP] [GO:0007528 "neuromuscular junction
            development" evidence=IMP] [GO:0008053 "mitochondrial fusion"
            evidence=IGI] [GO:0008233 "peptidase activity" evidence=IEA]
            [GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0016265 "death" evidence=IMP] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0021675 "nerve development" evidence=IMP]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0034982
            "mitochondrial protein processing" evidence=IGI] [GO:0040014
            "regulation of multicellular organism growth" evidence=IMP]
            [GO:0042407 "cristae formation" evidence=IGI] [GO:0042552
            "myelination" evidence=IMP] [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0048747 "muscle fiber development" evidence=IMP]
            [GO:0060013 "righting reflex" evidence=IMP] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1916847
            GO:GO:0016021 GO:GO:0005524 GO:GO:0005743 GO:GO:0046872
            GO:GO:0007528 GO:GO:0008270 GO:GO:0006508 GO:GO:0040014
            GO:GO:0004222 GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
            eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
            HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
            GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
            CTD:10939 OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
            MEROPS:M41.007 EMBL:BC036999 EMBL:BC043056 IPI:IPI00170357
            RefSeq:NP_081406.1 UniGene:Mm.426052 ProteinModelPortal:Q8JZQ2
            SMR:Q8JZQ2 IntAct:Q8JZQ2 STRING:Q8JZQ2 PhosphoSite:Q8JZQ2
            PaxDb:Q8JZQ2 PRIDE:Q8JZQ2 Ensembl:ENSMUST00000025408 GeneID:69597
            KEGG:mmu:69597 UCSC:uc008fmf.1 InParanoid:Q8JZQ2 NextBio:329880
            Bgee:Q8JZQ2 CleanEx:MM_AFG3L2 Genevestigator:Q8JZQ2
            GermOnline:ENSMUSG00000024527 Uniprot:Q8JZQ2
        Length = 802

 Score = 281 (104.0 bits), Expect = 1.6e-23, P = 1.6e-23
 Identities = 67/159 (42%), Positives = 95/159 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F LA++NAP I+FIDE+DA+   R     G   E +  L +LL +MDGF+ T NV 
Sbjct:   388 VRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVV 447

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-EVD--LE-DYVSRP 117
             ++  TNR D LDPALLRPGR DR+I    PD + +  +F+++L   ++D  LE D ++R 
Sbjct:   448 ILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLARK 507

Query:   118 -----DKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
                     S A++A +C EA + A R     I  K FE+
Sbjct:   508 LASLTPGFSGADVANVCNEAALIAARHLSDAINEKHFEQ 546


>UNIPROTKB|F1LN92 [details] [associations]
            symbol:Afg3l2 "Protein Afg3l2" species:10116 "Rattus
            norvegicus" [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005743
            "mitochondrial inner membrane" evidence=IEA] [GO:0006508
            "proteolysis" evidence=IEA] [GO:0007409 "axonogenesis"
            evidence=IEA] [GO:0007528 "neuromuscular junction development"
            evidence=IEA] [GO:0008053 "mitochondrial fusion" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016021 "integral
            to membrane" evidence=IEA] [GO:0016265 "death" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0021675 "nerve development" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0034982 "mitochondrial protein
            processing" evidence=IEA] [GO:0040014 "regulation of multicellular
            organism growth" evidence=IEA] [GO:0042407 "cristae formation"
            evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0060013
            "righting reflex" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 RGD:1305259
            GO:GO:0016021 GO:GO:0005524 GO:GO:0005743 GO:GO:0007528
            GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
            GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
            GeneTree:ENSGT00530000063070 KO:K08956 GO:GO:0017111 GO:GO:0042407
            GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 CTD:10939
            OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
            IPI:IPI00192903 RefSeq:NP_001128336.1 UniGene:Rn.8386
            ProteinModelPortal:F1LN92 PRIDE:F1LN92 Ensembl:ENSRNOT00000024632
            GeneID:307350 KEGG:rno:307350 NextBio:657254 ArrayExpress:F1LN92
            Uniprot:F1LN92
        Length = 802

 Score = 281 (104.0 bits), Expect = 1.6e-23, P = 1.6e-23
 Identities = 67/159 (42%), Positives = 95/159 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F LA++NAP I+FIDE+DA+   R     G   E +  L +LL +MDGF+ T NV 
Sbjct:   388 VRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVV 447

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-EVD--LE-DYVSRP 117
             ++  TNR D LDPALLRPGR DR+I    PD + +  +F+++L   ++D  LE D ++R 
Sbjct:   448 ILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLARK 507

Query:   118 -----DKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
                     S A++A +C EA + A R     I  K FE+
Sbjct:   508 LASLTPGFSGADVANVCNEAALIAARHLSDAINEKHFEQ 546


>UNIPROTKB|E1BZ74 [details] [associations]
            symbol:AFG3L2 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005743 "mitochondrial
            inner membrane" evidence=IEA] [GO:0007409 "axonogenesis"
            evidence=IEA] [GO:0007528 "neuromuscular junction development"
            evidence=IEA] [GO:0008053 "mitochondrial fusion" evidence=IEA]
            [GO:0016265 "death" evidence=IEA] [GO:0021675 "nerve development"
            evidence=IEA] [GO:0034982 "mitochondrial protein processing"
            evidence=IEA] [GO:0040014 "regulation of multicellular organism
            growth" evidence=IEA] [GO:0042407 "cristae formation" evidence=IEA]
            [GO:0042552 "myelination" evidence=IEA] [GO:0060013 "righting
            reflex" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005524 GO:GO:0005743 GO:GO:0008270 GO:GO:0006508
            GO:GO:0040014 GO:GO:0004222 GO:GO:0030163
            GeneTree:ENSGT00530000063070 GO:GO:0017111 GO:GO:0042407
            GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 GO:GO:0016265
            GO:GO:0060013 EMBL:AADN02058877 EMBL:AADN02058878 EMBL:AADN02058879
            IPI:IPI00603273 Ensembl:ENSGALT00000022474 ArrayExpress:E1BZ74
            Uniprot:E1BZ74
        Length = 805

 Score = 281 (104.0 bits), Expect = 1.6e-23, P = 1.6e-23
 Identities = 66/159 (41%), Positives = 93/159 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F LA++NAP I+FIDE+DA+   R     G   E +  L +LL +MDGF+ T NV 
Sbjct:   389 VRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVV 448

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS----DEVDLEDYVSRP 117
             ++  TNR D LDPAL+RPGR DR+I    PD + +  +F+++L     D V  +D ++R 
Sbjct:   449 ILAGTNRPDILDPALMRPGRFDRQIYIGPPDIKGRASIFKVHLRPLKLDTVLDKDNLARK 508

Query:   118 -----DKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
                     S A+IA +C EA + A R     I  K FE+
Sbjct:   509 LASLTPGFSGADIANVCNEAALIAARHLSDAINQKHFEQ 547


>UNIPROTKB|Q9Y4W6 [details] [associations]
            symbol:AFG3L2 "AFG3-like protein 2" species:9606 "Homo
            sapiens" [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008219
            "cell death" evidence=IEA] [GO:0016021 "integral to membrane"
            evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
            evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0007528
            "neuromuscular junction development" evidence=IEA] [GO:0008053
            "mitochondrial fusion" evidence=IEA] [GO:0021675 "nerve
            development" evidence=IEA] [GO:0034982 "mitochondrial protein
            processing" evidence=IEA] [GO:0040014 "regulation of multicellular
            organism growth" evidence=IEA] [GO:0042407 "cristae formation"
            evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0060013
            "righting reflex" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0051082 "unfolded protein binding" evidence=TAS]
            [GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005743 GO:GO:0046872
            GO:GO:0008219 DrugBank:DB00171 GO:GO:0007528 GO:GO:0051082
            GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
            GO:GO:0042552 GO:GO:0007409 GO:GO:0030163 eggNOG:COG0465
            HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
            GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
            CTD:10939 GO:GO:0021675 GO:GO:0060013 EMBL:Y18314 EMBL:BC065016
            IPI:IPI00001091 RefSeq:NP_006787.2 UniGene:Hs.726355 PDB:2LNA
            PDBsum:2LNA ProteinModelPortal:Q9Y4W6 SMR:Q9Y4W6 IntAct:Q9Y4W6
            MINT:MINT-1161944 STRING:Q9Y4W6 MEROPS:M41.007 PhosphoSite:Q9Y4W6
            DMDM:126302516 PaxDb:Q9Y4W6 PeptideAtlas:Q9Y4W6 PRIDE:Q9Y4W6
            Ensembl:ENST00000269143 GeneID:10939 KEGG:hsa:10939 UCSC:uc002kqz.2
            GeneCards:GC18M012328 H-InvDB:HIX0027367 HGNC:HGNC:315
            HPA:HPA004479 HPA:HPA004480 MIM:604581 MIM:610246 MIM:614487
            neXtProt:NX_Q9Y4W6 Orphanet:101109 PharmGKB:PA24612
            InParanoid:Q9Y4W6 PhylomeDB:Q9Y4W6 GenomeRNAi:10939 NextBio:41551
            ArrayExpress:Q9Y4W6 Bgee:Q9Y4W6 CleanEx:HS_AFG3L2
            Genevestigator:Q9Y4W6 GermOnline:ENSG00000141385 Uniprot:Q9Y4W6
        Length = 797

 Score = 279 (103.3 bits), Expect = 2.5e-23, P = 2.5e-23
 Identities = 67/159 (42%), Positives = 95/159 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F LA++NAP I+FIDE+DA+   R     G   E +  L +LL +MDGF+ T NV 
Sbjct:   389 VRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVV 448

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-EVD--LE-DYVSRP 117
             ++  TNR D LDPALLRPGR DR+I    PD + +  +F+++L   ++D  LE D ++R 
Sbjct:   449 ILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKDKLARK 508

Query:   118 -----DKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
                     S A++A +C EA + A R     I  K FE+
Sbjct:   509 LASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQ 547


>TIGR_CMR|CPS_3452 [details] [associations]
            symbol:CPS_3452 "ATP-dependent metalloprotease FtsH"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
            GO:GO:0004222 GO:GO:0016887 EMBL:CP000083 GenomeReviews:CP000083_GR
            GO:GO:0030163 eggNOG:COG0465 HOGENOM:HOG000217277
            TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 OMA:RSIIDQC
            RefSeq:YP_270126.1 ProteinModelPortal:Q47YJ4 SMR:Q47YJ4
            STRING:Q47YJ4 GeneID:3519317 KEGG:cps:CPS_3452 PATRIC:21469851
            BioCyc:CPSY167879:GI48-3480-MONOMER Uniprot:Q47YJ4
        Length = 660

 Score = 277 (102.6 bits), Expect = 2.8e-23, P = 2.8e-23
 Identities = 64/154 (41%), Positives = 89/154 (57%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F  AK+ AP IIFIDE+DA+   R     G   E ++ L ++L +MDGF+    V 
Sbjct:   235 VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGMGGGHDEREQTLNQMLVEMDGFEGNEGVI 294

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSR 116
             VI ATNR D LDPALLRPGR DR++   LPD R +  + +++     L D+V  E     
Sbjct:   295 VIAATNRPDVLDPALLRPGRFDRQVTVGLPDIRGREQILKVHMRKVPLGDDVKAEVIARG 354

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
                 S A++A +  EA + A R  R V+  K+F+
Sbjct:   355 TPGFSGADLANLVNEAALCAARTARRVVSMKEFD 388


>SGD|S000004695 [details] [associations]
            symbol:YTA12 "Component of the mitochondrial inner membrane
            m-AAA protease" species:4932 "Saccharomyces cerevisiae" [GO:0016887
            "ATPase activity" evidence=ISS;IDA;IMP] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005739 "mitochondrion"
            evidence=IEA;IDA] [GO:0006508 "proteolysis" evidence=IEA;IMP]
            [GO:0016020 "membrane" evidence=IEA] [GO:0046872 "metal ion
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;IDA]
            [GO:0008233 "peptidase activity" evidence=IEA] [GO:0008237
            "metallopeptidase activity" evidence=IEA;IMP] [GO:0016021 "integral
            to membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0097002 "mitochondrial inner boundary membrane"
            evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
            evidence=IDA] [GO:0045041 "protein import into mitochondrial
            intermembrane space" evidence=TAS] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0006461 "protein complex assembly" evidence=IMP]
            [GO:0006465 "signal peptide processing" evidence=IMP] [GO:0005745
            "m-AAA complex" evidence=IDA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0031966 "mitochondrial membrane" evidence=IEA]
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 SGD:S000004695 EMBL:U09358 GO:GO:0005524
            GO:GO:0006461 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
            GO:GO:0008237 GO:GO:0004222 GO:GO:0016887 EMBL:BK006946
            GO:GO:0030163 EMBL:Z49259 eggNOG:COG0465
            GeneTree:ENSGT00530000063070 KO:K08956 TIGRFAMs:TIGR01241
            OrthoDB:EOG4J14HG GO:GO:0005745 GO:GO:0097002 GO:GO:0045041
            GO:GO:0006465 EMBL:X81068 EMBL:AY693099 PIR:S54465
            RefSeq:NP_013807.1 ProteinModelPortal:P40341 SMR:P40341
            DIP:DIP-889N IntAct:P40341 MINT:MINT-596896 STRING:P40341
            MEROPS:M41.003 PaxDb:P40341 PeptideAtlas:P40341
            EnsemblFungi:YMR089C GeneID:855114 KEGG:sce:YMR089C CYGD:YMR089c
            OMA:NFSGAND NextBio:978455 Genevestigator:P40341 GermOnline:YMR089C
            Uniprot:P40341
        Length = 825

 Score = 270 (100.1 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
 Identities = 63/158 (39%), Positives = 94/158 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQ-TGADREVQRILMELLNQMDGFDQTVNV 60
             VRD+F+ A+ENAP+I+FIDE+DAI  AR     +GA+ E +  L ++L +MDGF    +V
Sbjct:   429 VRDLFKTARENAPSIVFIDEIDAIGKARQKGNFSGANDERENTLNQMLVEMDGFTPADHV 488

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF-----QMNLSDEV-DLEDYV 114
              V+  TNR D LD ALLRPGR DR I    P+   ++ +F      + L+ E+ DL++ +
Sbjct:   489 VVLAGTNRPDILDKALLRPGRFDRHINIDKPELEGRKAIFAVHLHHLKLAGEIFDLKNRL 548

Query:   115 SR-PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
             +      S A+IA +C EA + A R +   +    FE+
Sbjct:   549 AALTPGFSGADIANVCNEAALIAARSDEDAVKLNHFEQ 586

 Score = 34 (17.0 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query:   147 KDFEKGYRTNVKKPDTD 163
             K+ EK  + N  KP T+
Sbjct:   809 KEEEKNEKRNEPKPSTN 825


>TAIR|locus:2052806 [details] [associations]
            symbol:VAR2 "VARIEGATED 2" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008152 "metabolic
            process" evidence=IEA] [GO:0008237 "metallopeptidase activity"
            evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0004176
            "ATP-dependent peptidase activity" evidence=ISS] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0010027
            "thylakoid membrane organization" evidence=RCA;IMP] [GO:0009507
            "chloroplast" evidence=IDA] [GO:0010205 "photoinhibition"
            evidence=IMP] [GO:0031977 "thylakoid lumen" evidence=IDA]
            [GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009579
            "thylakoid" evidence=IDA] [GO:0010304 "PSII associated
            light-harvesting complex II catabolic process" evidence=RCA;TAS]
            [GO:0016020 "membrane" evidence=IDA] [GO:0030163 "protein catabolic
            process" evidence=IDA] [GO:0072593 "reactive oxygen species
            metabolic process" evidence=IDA] [GO:0009534 "chloroplast
            thylakoid" evidence=IDA] [GO:0006098 "pentose-phosphate shunt"
            evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
            [GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010207
            "photosystem II assembly" evidence=RCA] [GO:0034660 "ncRNA
            metabolic process" evidence=RCA] [GO:0035304 "regulation of protein
            dephosphorylation" evidence=RCA] [GO:0042744 "hydrogen peroxide
            catabolic process" evidence=RCA] [GO:0042793 "transcription from
            plastid promoter" evidence=RCA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=RCA] [GO:0010206
            "photosystem II repair" evidence=IMP] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0007275 GO:GO:0005524
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0006508
            GO:GO:0009941 GO:GO:0008237 GO:GO:0004222 EMBL:AC004669
            GO:GO:0010027 GO:GO:0072593 GO:GO:0010205 eggNOG:COG0465
            TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535 GO:GO:0031977
            GO:GO:0004176 GO:GO:0010206 HOGENOM:HOG000217276 KO:K03798
            GO:GO:0010304 EMBL:AF135189 EMBL:AY045599 EMBL:AY093791
            EMBL:AK221155 IPI:IPI00546467 PIR:F84714 RefSeq:NP_850156.1
            UniGene:At.22024 UniGene:At.71129 UniGene:At.75189
            ProteinModelPortal:O80860 SMR:O80860 IntAct:O80860 STRING:O80860
            MEROPS:M41.005 World-2DPAGE:0003:O80860 PaxDb:O80860 PRIDE:O80860
            ProMEX:O80860 EnsemblPlants:AT2G30950.1 GeneID:817646
            KEGG:ath:AT2G30950 GeneFarm:2504 TAIR:At2g30950 InParanoid:O80860
            OMA:LEIIAMR PhylomeDB:O80860 ProtClustDB:CLSN2679937
            Genevestigator:O80860 Uniprot:O80860
        Length = 695

 Score = 277 (102.6 bits), Expect = 3.1e-23, P = 3.1e-23
 Identities = 61/154 (39%), Positives = 92/154 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F+ AKENAP I+F+DE+DA+   R     G + E ++ L +LL +MDGF+    V 
Sbjct:   308 VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVI 367

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSR 116
             V+ ATNRAD LD ALLRPGR DR++   +PD + +  + +++       ++V LE    R
Sbjct:   368 VVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHAGNKKFDNDVSLEIIAMR 427

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
                 S A++A +  EA + A R+ R  I  K+ +
Sbjct:   428 TPGFSGADLANLLNEAAILAGRRARTSISSKEID 461


>TIGR_CMR|NSE_0423 [details] [associations]
            symbol:NSE_0423 "ATP-dependent metalloprotease FtsH"
            species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
            GO:GO:0004222 GO:GO:0016887 GO:GO:0030163 eggNOG:COG0465
            TIGRFAMs:TIGR01241 EMBL:CP000237 GenomeReviews:CP000237_GR
            HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001 RefSeq:YP_506309.1
            ProteinModelPortal:Q2GDY7 SMR:Q2GDY7 STRING:Q2GDY7 GeneID:3931660
            KEGG:nse:NSE_0423 PATRIC:22680905 OMA:ENIESLH
            ProtClustDB:CLSK749654 BioCyc:NSEN222891:GHFU-445-MONOMER
            Uniprot:Q2GDY7
        Length = 636

 Score = 276 (102.2 bits), Expect = 3.3e-23, P = 3.3e-23
 Identities = 60/154 (38%), Positives = 92/154 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F   K+NAP +IFIDE+DA+   R     G + E ++ L +LL +MDGF+    V 
Sbjct:   238 VRDMFEQGKKNAPCLIFIDEIDAVGRHRGVGFGGGNDEREQTLNQLLVEMDGFEANEGVI 297

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D LDPALLRPGR DR+I   +PD   ++ + +++L     +  V++      
Sbjct:   298 IIAATNRPDVLDPALLRPGRFDRQITISIPDIAGRQKILEVHLKKIPTAPNVEVSIIARG 357

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
                 S A++A +  E+ + A R+N+ V+  +DFE
Sbjct:   358 TPGFSGADLANLVNESALIAARRNKKVVTNEDFE 391


>UNIPROTKB|I3LLQ8 [details] [associations]
            symbol:AFG3L2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0060013 "righting reflex" evidence=IEA] [GO:0042552
            "myelination" evidence=IEA] [GO:0042407 "cristae formation"
            evidence=IEA] [GO:0040014 "regulation of multicellular organism
            growth" evidence=IEA] [GO:0034982 "mitochondrial protein
            processing" evidence=IEA] [GO:0021675 "nerve development"
            evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
            "mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
            junction development" evidence=IEA] [GO:0007409 "axonogenesis"
            evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0006508
            "proteolysis" evidence=IEA] [GO:0004222 "metalloendopeptidase
            activity" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005743 GO:GO:0007528
            GO:GO:0006508 GO:GO:0040014 GO:GO:0004222 GO:GO:0042552
            GO:GO:0007409 GO:GO:0030163 GeneTree:ENSGT00530000063070
            GO:GO:0017111 GO:GO:0042407 GO:GO:0008053 GO:GO:0034982
            TIGRFAMs:TIGR01241 OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675
            GO:GO:0060013 EMBL:FP565334 Ensembl:ENSSSCT00000025900
            Uniprot:I3LLQ8
        Length = 597

 Score = 275 (101.9 bits), Expect = 3.6e-23, P = 3.6e-23
 Identities = 66/159 (41%), Positives = 92/159 (57%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F LA++NAP I+FIDE+DA+   R     G   E +  L +LL +MDGF+ T NV 
Sbjct:   181 VRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVV 240

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-EVD--LED------ 112
             ++  TNR D LDPALLRPGR DR+I    PD + +  +F+++L   ++D  LE       
Sbjct:   241 ILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKEKLARK 300

Query:   113 YVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
               S     S A++A +C EA + A R     I  K FE+
Sbjct:   301 LASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQ 339


>TAIR|locus:2009235 [details] [associations]
            symbol:FTSH8 "FTSH protease 8" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=ISM] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008237
            "metallopeptidase activity" evidence=ISS] [GO:0008270 "zinc ion
            binding" evidence=IEA;ISS] [GO:0016020 "membrane" evidence=IEA;IDA]
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0016887
            "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0004176
            "ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0009507 "chloroplast"
            evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0010304 "PSII associated light-harvesting complex
            II catabolic process" evidence=TAS] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0007275 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872 GO:GO:0008270
            GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 EMBL:AC007592
            eggNOG:COG0465 TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535
            GO:GO:0004176 HOGENOM:HOG000217276 KO:K03798 GO:GO:0010304
            ProtClustDB:CLSN2679937 EMBL:AF419565 EMBL:BT002649 EMBL:BT003813
            EMBL:AY045951 IPI:IPI00539195 RefSeq:NP_563766.3 UniGene:At.17054
            ProteinModelPortal:Q8W585 SMR:Q8W585 STRING:Q8W585 MEROPS:M41.025
            PaxDb:Q8W585 PRIDE:Q8W585 ProMEX:Q8W585 EnsemblPlants:AT1G06430.1
            GeneID:837154 KEGG:ath:AT1G06430 GeneFarm:2474 TAIR:At1g06430
            InParanoid:Q8W585 OMA:NANADEQ PhylomeDB:Q8W585
            Genevestigator:Q8W585 Uniprot:Q8W585
        Length = 685

 Score = 275 (101.9 bits), Expect = 5.0e-23, P = 5.0e-23
 Identities = 60/154 (38%), Positives = 92/154 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F+ AKENAP I+F+DE+DA+   R     G + E ++ L +LL +MDGF+    V 
Sbjct:   301 VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVI 360

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSDE-----VDLEDYVSR 116
             V+ ATNRAD LD ALLRPGR DR++   +PD + +  + +++  ++     V LE    R
Sbjct:   361 VVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGNKKFESGVSLEVIAMR 420

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
                 S A++A +  EA + A R+ +  I  K+ +
Sbjct:   421 TPGFSGADLANLLNEAAILAGRRGKTAISSKEID 454


>UNIPROTKB|P0AAI3 [details] [associations]
            symbol:ftsH species:83333 "Escherichia coli K-12"
            [GO:0016887 "ATPase activity" evidence=IDA] [GO:0006508
            "proteolysis" evidence=IEA;IDA] [GO:0043273 "CTPase activity"
            evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA;IDA]
            [GO:0030145 "manganese ion binding" evidence=IDA] [GO:0016021
            "integral to membrane" evidence=IEA;IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0004222 "metalloendopeptidase
            activity" evidence=IEA] [GO:0006200 "ATP catabolic process"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0008233
            "peptidase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR GO:GO:0008270 GO:GO:0006508 EMBL:U18997
            GO:GO:0004222 GO:GO:0016887 GO:GO:0030145 GO:GO:0030163
            eggNOG:COG0465 TIGRFAMs:TIGR01241 GO:GO:0043273 EMBL:U01376
            HOGENOM:HOG000217276 KO:K03798 EMBL:M83138 PIR:S35109
            RefSeq:NP_417645.1 RefSeq:YP_491363.1 PDB:1LV7 PDBsum:1LV7
            ProteinModelPortal:P0AAI3 SMR:P0AAI3 DIP:DIP-35828N IntAct:P0AAI3
            MINT:MINT-1226643 MEROPS:M41.001 PaxDb:P0AAI3 PRIDE:P0AAI3
            EnsemblBacteria:EBESCT00000000369 EnsemblBacteria:EBESCT00000000370
            EnsemblBacteria:EBESCT00000017485 GeneID:12933986 GeneID:947690
            KEGG:ecj:Y75_p3098 KEGG:eco:b3178 PATRIC:32121774 EchoBASE:EB1469
            EcoGene:EG11506 OMA:RSIIDQC ProtClustDB:PRK10733
            BioCyc:EcoCyc:EG11506-MONOMER BioCyc:ECOL316407:JW3145-MONOMER
            BioCyc:MetaCyc:EG11506-MONOMER SABIO-RK:P0AAI3
            EvolutionaryTrace:P0AAI3 Genevestigator:P0AAI3 Uniprot:P0AAI3
        Length = 644

 Score = 274 (101.5 bits), Expect = 5.5e-23, P = 5.5e-23
 Identities = 62/155 (40%), Positives = 90/155 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F  AK+ AP IIFIDE+DA+   R     G   E ++ L ++L +MDGF+    + 
Sbjct:   233 VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSR 116
             VI ATNR D LDPALLRPGR DR++   LPD R +  + +++     L+ ++D       
Sbjct:   293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARG 352

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
                 S A++A +  EA + A R N+ V+   +FEK
Sbjct:   353 TPGFSGADLANLVNEAALFAARGNKRVVSMVEFEK 387


>ZFIN|ZDB-GENE-070912-46 [details] [associations]
            symbol:afg3l2 "AFG3 ATPase family gene 3-like 2 (S.
            cerevisiae)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
            "membrane" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0016021
            "integral to membrane" evidence=IEA] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-070912-46 GO:GO:0016021 GO:GO:0005524
            GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
            eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
            HOVERGEN:HBG050184 KO:K08956 GO:GO:0017111 TIGRFAMs:TIGR01241
            CTD:10939 MEROPS:M41.007 EMBL:BX000484 EMBL:BC155655
            IPI:IPI00513225 RefSeq:NP_001104667.1 UniGene:Dr.82691 SMR:A9JRG9
            STRING:A9JRG9 Ensembl:ENSDART00000089834 GeneID:569168
            KEGG:dre:569168 NextBio:20889547 Uniprot:A9JRG9
        Length = 800

 Score = 275 (101.9 bits), Expect = 6.8e-23, P = 6.8e-23
 Identities = 65/159 (40%), Positives = 91/159 (57%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F LA++NAP I+FIDE+DA+   R     G   E +  L +LL +MDGF+   NV 
Sbjct:   384 VRDLFVLARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTATNVV 443

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVDLEDYVSR 116
             V+  TNR D LDPAL+RPGR DR+I    PD + +  +F+++L       E+D E    +
Sbjct:   444 VLAGTNRPDILDPALMRPGRFDRQIYIGPPDIKGRASIFKVHLRPLKLEAELDKEALARK 503

Query:   117 PDKI----SAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
                +    S A+IA +C EA + A R     I  K FE+
Sbjct:   504 MAALTPGFSGADIANVCNEAALIAARHLSDAINQKHFEQ 542


>UNIPROTKB|E1BFQ0 [details] [associations]
            symbol:E1BFQ0 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0042407 "cristae formation" evidence=IEA] [GO:0034982
            "mitochondrial protein processing" evidence=IEA] [GO:0008053
            "mitochondrial fusion" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
            "integral to membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0004222
            "metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
            GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
            GeneTree:ENSGT00530000063070 OMA:WDEKDFR GO:GO:0017111
            GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
            EMBL:DAAA02046282 IPI:IPI00707325 Ensembl:ENSBTAT00000056979
            Uniprot:E1BFQ0
        Length = 802

 Score = 275 (101.9 bits), Expect = 6.9e-23, P = 6.9e-23
 Identities = 66/161 (40%), Positives = 94/161 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F LA++NAP I+F+DE+DAI   R     G   E +  L +LL +MDGF+ T NV 
Sbjct:   384 VRDMFALARKNAPCILFVDEIDAIGRKRGRGHFGGQSEQENTLNQLLVEMDGFNSTTNVV 443

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS----DEVDLEDYVSR- 116
             V+  TNR D LDPAL+RPGR DR+I    PD + +  +F+++L     DE   +D ++R 
Sbjct:   444 VLAGTNRPDVLDPALMRPGRFDRQIYIGPPDIKGRSSIFRVHLRPLKLDESLSKDALARK 503

Query:   117 -----PDKI-SAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
                  P    S A+I+ +C EA + A R     +  K FE+
Sbjct:   504 LAALTPGFTGSGADISNVCNEAALIAARHLNPSVGEKHFEQ 544


>TAIR|locus:2138146 [details] [associations]
            symbol:FtsHi1 "FTSH inactive protease 1" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008237 "metallopeptidase
            activity" evidence=ISS] [GO:0009658 "chloroplast organization"
            evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0009507 "chloroplast" evidence=IDA] [GO:0009941 "chloroplast
            envelope" evidence=IDA] [GO:0007020 "microtubule nucleation"
            evidence=RCA] [GO:0010020 "chloroplast fission" evidence=IMP]
            [GO:0009536 "plastid" evidence=IDA] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 Pfam:PF01434
            SMART:SM00382 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0051301 GO:GO:0006508 GO:GO:0009941 GO:GO:0004222
            eggNOG:COG0465 GO:GO:0017111 GO:GO:0010020 EMBL:AC002343
            EMBL:AL078468 EMBL:AL161560 HSSP:Q9LCZ4 IPI:IPI00537043 PIR:T08913
            RefSeq:NP_567691.1 UniGene:At.3392 ProteinModelPortal:O22993
            SMR:O22993 PaxDb:O22993 PRIDE:O22993 EnsemblPlants:AT4G23940.1
            GeneID:828494 KEGG:ath:AT4G23940 TAIR:At4g23940
            HOGENOM:HOG000029491 InParanoid:O22993 OMA:QMAGSEF PhylomeDB:O22993
            ProtClustDB:CLSN2689578 ArrayExpress:O22993 Genevestigator:O22993
            Uniprot:O22993
        Length = 946

 Score = 276 (102.2 bits), Expect = 7.2e-23, P = 7.2e-23
 Identities = 68/162 (41%), Positives = 95/162 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATAR---FDAQT-----GADREVQRILMELLNQMDG 53
             +RD+F+ AK N P++IFIDE+DA+AT R   F   +      A +E +  L +LL ++DG
Sbjct:   511 IRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKENSDQLYNAATQERETTLNQLLIELDG 570

Query:    54 FDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN-----LSDEV 108
             FD    V  + ATNR D LDPALLRPGR DRKI    P+ + +  + +++     +SD V
Sbjct:   571 FDTGKGVIFLGATNRRDLLDPALLRPGRFDRKIRVRPPNAKGRLDILKIHASKVKMSDSV 630

Query:   109 DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
             DL  Y S     S A++A + QEA + AVRK    IL  D +
Sbjct:   631 DLSSYASNLPGWSGAKLAQLVQEAALVAVRKTHNSILQSDMD 672


>FB|FBgn0032450 [details] [associations]
            symbol:CG5776 species:7227 "Drosophila melanogaster"
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0005783
            "endoplasmic reticulum" evidence=ISS] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 EMBL:AE014134 GO:GO:0006200 GO:GO:0016887 HSSP:Q01853
            eggNOG:COG0464 KO:K14575 GeneTree:ENSGT00700000104502 OMA:MLLRCVA
            EMBL:AY051725 RefSeq:NP_609585.1 UniGene:Dm.8715 SMR:Q9VK63
            EnsemblMetazoa:FBtr0080407 EnsemblMetazoa:FBtr0329925 GeneID:34680
            KEGG:dme:Dmel_CG5776 UCSC:CG5776-RA FlyBase:FBgn0032450
            InParanoid:Q9VK63 OrthoDB:EOG4547DV GenomeRNAi:34680 NextBio:789659
            Uniprot:Q9VK63
        Length = 799

 Score = 274 (101.5 bits), Expect = 8.7e-23, P = 8.7e-23
 Identities = 59/146 (40%), Positives = 89/146 (60%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARF--DAQTGADREVQRILMELLNQMDGFDQTVN 59
             VR+VFR A++ APAI+F DE+DAI   R   D  +      +R+L +LL ++DG +   N
Sbjct:   617 VREVFRKARQVAPAIVFFDEIDAIGGERSEGDGSSSGSSVKERVLTQLLTELDGVEALQN 676

Query:    60 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYV 114
             V ++ ATNR D +D ALLRPGR+DR +   LP    +R + ++ L     S++VD+E  V
Sbjct:   677 VTIVAATNRPDMIDKALLRPGRIDRILYVGLPQCEARREILKIKLRAMPISNDVDMEKLV 736

Query:   115 SRPDKISAAEIAAICQEAGMHAVRKN 140
                +  S AEI A+C EA + A+ ++
Sbjct:   737 QLTEGYSGAEIQAVCHEAALRALEQS 762


>TIGR_CMR|CBU_1352 [details] [associations]
            symbol:CBU_1352 "ATP-dependent metalloprotease FtsH"
            species:227377 "Coxiella burnetii RSA 493" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
            GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
            EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0030163
            TIGRFAMs:TIGR01241 HSSP:P28691 HOGENOM:HOG000217276 KO:K03798
            MEROPS:M41.001 OMA:RSIIDQC RefSeq:NP_820341.1
            ProteinModelPortal:Q83BY5 SMR:Q83BY5 PRIDE:Q83BY5 GeneID:1209258
            KEGG:cbu:CBU_1352 PATRIC:17931447 ProtClustDB:CLSK914722
            BioCyc:CBUR227377:GJ7S-1342-MONOMER Uniprot:Q83BY5
        Length = 647

 Score = 272 (100.8 bits), Expect = 9.2e-23, P = 9.2e-23
 Identities = 63/155 (40%), Positives = 90/155 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F  AK+ AP IIFIDE+DA+   R     G   E ++ L +LL +MDGF+    + 
Sbjct:   237 VRDMFDQAKKQAPCIIFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFEGKEGII 296

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ--MN---LSDEVDLEDYVSR 116
             V+ ATNR D LDPALLRPGR DR++  PLPD + +  + +  MN   L+ +V        
Sbjct:   297 VMAATNRPDVLDPALLRPGRFDRQVVVPLPDIKGREYILKVHMNKLPLAKDVKASVIARG 356

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
                 S A++A I  EA + A R+N+  +   +FE+
Sbjct:   357 TPGFSGADLANIVNEAALFAARENKKDVSMSEFER 391


>UNIPROTKB|Q2GIT4 [details] [associations]
            symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
            species:212042 "Anaplasma phagocytophilum HZ" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
            evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
            "ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0016887 GO:GO:0000910 EMBL:CP000235 GenomeReviews:CP000235_GR
            GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
            HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
            ProtClustDB:CLSK749654 RefSeq:YP_505717.1 ProteinModelPortal:Q2GIT4
            SMR:Q2GIT4 STRING:Q2GIT4 GeneID:3930902 KEGG:aph:APH_1179
            PATRIC:20951138 OMA:GHAVVAM BioCyc:APHA212042:GHPM-1185-MONOMER
            Uniprot:Q2GIT4
        Length = 611

 Score = 271 (100.5 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 61/154 (39%), Positives = 91/154 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F   K++AP IIF+DE+DA+   R     G + E ++ L +LL +MDGF+    V 
Sbjct:   239 VRDMFEQGKKHAPCIIFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESNEGVV 298

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPD--RRQKRLVF---QMNLSDEVDLEDYVSR 116
             +I ATNR D LDPALLRPGR DR++   +PD   R+K +     ++ L+ +VDL      
Sbjct:   299 IIAATNRPDVLDPALLRPGRFDRQVTISIPDINGREKIIAVHAKKVPLAPDVDLRVIARG 358

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
                 S A++A +  EA + A R ++ ++   DFE
Sbjct:   359 TPGFSGADLANLVNEAALIAARLDKKIVTMCDFE 392


>TIGR_CMR|APH_1179 [details] [associations]
            symbol:APH_1179 "ATP-dependent metalloprotease FtsH"
            species:212042 "Anaplasma phagocytophilum HZ" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
            GO:GO:0004222 GO:GO:0016887 GO:GO:0000910 EMBL:CP000235
            GenomeReviews:CP000235_GR GO:GO:0030163 eggNOG:COG0465
            TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
            ProtClustDB:CLSK749654 RefSeq:YP_505717.1 ProteinModelPortal:Q2GIT4
            SMR:Q2GIT4 STRING:Q2GIT4 GeneID:3930902 KEGG:aph:APH_1179
            PATRIC:20951138 OMA:GHAVVAM BioCyc:APHA212042:GHPM-1185-MONOMER
            Uniprot:Q2GIT4
        Length = 611

 Score = 271 (100.5 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 61/154 (39%), Positives = 91/154 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F   K++AP IIF+DE+DA+   R     G + E ++ L +LL +MDGF+    V 
Sbjct:   239 VRDMFEQGKKHAPCIIFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESNEGVV 298

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPD--RRQKRLVF---QMNLSDEVDLEDYVSR 116
             +I ATNR D LDPALLRPGR DR++   +PD   R+K +     ++ L+ +VDL      
Sbjct:   299 IIAATNRPDVLDPALLRPGRFDRQVTISIPDINGREKIIAVHAKKVPLAPDVDLRVIARG 358

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
                 S A++A +  EA + A R ++ ++   DFE
Sbjct:   359 TPGFSGADLANLVNEAALIAARLDKKIVTMCDFE 392


>TAIR|locus:2075581 [details] [associations]
            symbol:ftsh7 "FTSH protease 7" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
            evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0004176
            "ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
            "chloroplast envelope" evidence=IDA] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
            GO:GO:0008270 GO:GO:0006508 GO:GO:0009941 GO:GO:0004222
            GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241 HSSP:Q9WZ49
            GO:GO:0009535 EMBL:AL133292 GO:GO:0004176 HOGENOM:HOG000217276
            KO:K03798 EMBL:AY099737 EMBL:BT000368 IPI:IPI00522102 PIR:T45642
            RefSeq:NP_566889.1 UniGene:At.43767 ProteinModelPortal:Q9SD67
            SMR:Q9SD67 MEROPS:M41.A04 PaxDb:Q9SD67 PRIDE:Q9SD67
            EnsemblPlants:AT3G47060.1 GeneID:823859 KEGG:ath:AT3G47060
            GeneFarm:2514 TAIR:At3g47060 InParanoid:Q9SD67 OMA:SNQVQKV
            PhylomeDB:Q9SD67 ProtClustDB:CLSN2689036 Genevestigator:Q9SD67
            Uniprot:Q9SD67
        Length = 802

 Score = 273 (101.2 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 64/156 (41%), Positives = 95/156 (60%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDA-QTGADREVQRILMELLNQMDGFDQTVNV 60
             VRD+F  AK+ AP+IIFIDE+DA+A +R    + G++ E ++ L +LL +MDGFD    V
Sbjct:   406 VRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRMGSNDEREQTLNQLLTEMDGFDSNSAV 465

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS-------DEVDLEDY 113
              V+ ATNRAD LDPAL RPGR DR +    PD+  +  + ++++S       D+V+L   
Sbjct:   466 IVLGATNRADVLDPALRRPGRFDRVVTVETPDKIGRESILRVHVSKKELPLGDDVNLGSI 525

Query:   114 VSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 149
              S     + A++A +  EA + A RKN+  +   DF
Sbjct:   526 ASMTTGFTGADLANLVNEAALLAGRKNKTNVEKIDF 561


>UNIPROTKB|Q2KJI7 [details] [associations]
            symbol:AFG3L2 "AFG3-like protein 2" species:9913 "Bos
            taurus" [GO:0060013 "righting reflex" evidence=IEA] [GO:0042552
            "myelination" evidence=IEA] [GO:0042407 "cristae formation"
            evidence=IEA] [GO:0040014 "regulation of multicellular organism
            growth" evidence=IEA] [GO:0034982 "mitochondrial protein
            processing" evidence=IEA] [GO:0021675 "nerve development"
            evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
            "mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
            junction development" evidence=IEA] [GO:0007409 "axonogenesis"
            evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
            evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0006508 "proteolysis" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004222
            "metalloendopeptidase activity" evidence=IEA] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005524 GO:GO:0005743 GO:GO:0046872 GO:GO:0007528
            GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
            GO:GO:0042552 GO:GO:0007409 GO:GO:0030163 MEROPS:M41.016
            eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
            HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
            GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
            EMBL:BC105322 IPI:IPI00686580 RefSeq:NP_001039676.1 UniGene:Bt.1657
            HSSP:Q9WZ49 ProteinModelPortal:Q2KJI7 SMR:Q2KJI7 STRING:Q2KJI7
            PRIDE:Q2KJI7 Ensembl:ENSBTAT00000031029 GeneID:515757
            KEGG:bta:515757 CTD:10939 InParanoid:Q2KJI7 OMA:LYRFVTT
            NextBio:20871990 GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
            Uniprot:Q2KJI7
        Length = 805

 Score = 273 (101.2 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 65/159 (40%), Positives = 92/159 (57%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F LA++NAP I+FIDE+DA+   R     G   E +  L +LL +MDGF+ T NV 
Sbjct:   390 VRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVV 449

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-EVD--LED------ 112
             ++  TNR D LDPAL+RPGR DR+I    PD + +  +F+++L   ++D  LE       
Sbjct:   450 ILAGTNRPDILDPALMRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKEKLARK 509

Query:   113 YVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
               S     S A++A +C EA + A R     I  K FE+
Sbjct:   510 LASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQ 548


>UNIPROTKB|E2QYF3 [details] [associations]
            symbol:AFG3L2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0060013 "righting reflex" evidence=IEA]
            [GO:0042552 "myelination" evidence=IEA] [GO:0042407 "cristae
            formation" evidence=IEA] [GO:0040014 "regulation of multicellular
            organism growth" evidence=IEA] [GO:0034982 "mitochondrial protein
            processing" evidence=IEA] [GO:0021675 "nerve development"
            evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
            "mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
            junction development" evidence=IEA] [GO:0007409 "axonogenesis"
            evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
            "integral to membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0004222
            "metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0005743
            GO:GO:0007528 GO:GO:0008270 GO:GO:0006508 GO:GO:0040014
            GO:GO:0004222 GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
            GeneTree:ENSGT00530000063070 KO:K08956 GO:GO:0017111 GO:GO:0042407
            GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 CTD:10939
            OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
            EMBL:AAEX03005521 RefSeq:XP_547682.2 ProteinModelPortal:E2QYF3
            Ensembl:ENSCAFT00000029872 GeneID:490560 KEGG:cfa:490560
            Uniprot:E2QYF3
        Length = 806

 Score = 273 (101.2 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 65/159 (40%), Positives = 92/159 (57%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F LA++NAP I+FIDE+DA+   R     G   E +  L +LL +MDGF+ T NV 
Sbjct:   390 VRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVV 449

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-EVD--LED------ 112
             ++  TNR D LDPAL+RPGR DR+I    PD + +  +F+++L   ++D  LE       
Sbjct:   450 ILAGTNRPDILDPALMRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKEKLARK 509

Query:   113 YVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
               S     S A++A +C EA + A R     I  K FE+
Sbjct:   510 LASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQ 548


>UNIPROTKB|P37476 [details] [associations]
            symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
            species:224308 "Bacillus subtilis subsp. subtilis str. 168"
            [GO:0008233 "peptidase activity" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IDA] [GO:0030428 "cell septum"
            evidence=IDA] [GO:0043934 "sporulation" evidence=IMP]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0006950 GO:GO:0051301 GO:GO:0046872
            GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0007049
            GO:GO:0030163 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0043934
            eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0008233
            GO:GO:0030428 EMBL:D26185 HOGENOM:HOG000217276 KO:K03798 PIR:E69627
            RefSeq:NP_387950.1 ProteinModelPortal:P37476 SMR:P37476
            IntAct:P37476 MEROPS:M41.009 EnsemblBacteria:EBBACT00000001428
            GeneID:938094 KEGG:bsu:BSU00690 PATRIC:18971613 GenoList:BSU00690
            OMA:ENMSYST ProtClustDB:CLSK886567 BioCyc:BSUB:BSU00690-MONOMER
            Uniprot:P37476
        Length = 637

 Score = 271 (100.5 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 62/155 (40%), Positives = 90/155 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F  AK+NAP +IFIDE+DA+   R     G   E ++ L +LL +MDGF     + 
Sbjct:   242 VRDLFENAKKNAPCLIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANEGII 301

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSR 116
             +I ATNRAD LDPALLRPGR DR+I    PD   +  V +++     L + V+L+    R
Sbjct:   302 IIAATNRADILDPALLRPGRFDRQITVDRPDVIGREAVLKVHARNKPLDETVNLKSIAMR 361

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
                 S A++  +  EA + A R+N+  I  +D ++
Sbjct:   362 TPGFSGADLENLLNEAALVAARQNKKKIDARDIDE 396


>UNIPROTKB|Q5LNU8 [details] [associations]
            symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000910 "cytokinesis"
            evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
            [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005886 GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 HOGENOM:HOG000217277
            TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 RefSeq:YP_168308.1
            ProteinModelPortal:Q5LNU8 SMR:Q5LNU8 GeneID:3195808
            KEGG:sil:SPO3105 PATRIC:23379655 OMA:QINMEEV ProtClustDB:CLSK934061
            Uniprot:Q5LNU8
        Length = 639

 Score = 271 (100.5 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 61/154 (39%), Positives = 87/154 (56%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F  AK+NAP I+FIDE+DA+   R     G + E ++ L +LL +MDGF+    V 
Sbjct:   237 VRDMFEQAKKNAPCIVFIDEIDAVGRHRGAGYGGGNDEREQTLNQLLVEMDGFEANEGVI 296

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSR 116
             ++ ATNR D LDPALLRPGR DR +    PD + +  +  ++     L  +VDL      
Sbjct:   297 ILAATNRKDVLDPALLRPGRFDRNVTVGNPDIKGREKILGVHARKTPLGPDVDLRIIARG 356

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
                 S A++A +  EA + A R  R  +  +DFE
Sbjct:   357 TPGFSGADLANLVNEAALMAARVGRRFVTMEDFE 390


>TIGR_CMR|SPO_3105 [details] [associations]
            symbol:SPO_3105 "ATP-dependent metalloprotease FtsH"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000910 "cytokinesis"
            evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
            evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
            "ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005886 GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 HOGENOM:HOG000217277
            TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 RefSeq:YP_168308.1
            ProteinModelPortal:Q5LNU8 SMR:Q5LNU8 GeneID:3195808
            KEGG:sil:SPO3105 PATRIC:23379655 OMA:QINMEEV ProtClustDB:CLSK934061
            Uniprot:Q5LNU8
        Length = 639

 Score = 271 (100.5 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 61/154 (39%), Positives = 87/154 (56%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F  AK+NAP I+FIDE+DA+   R     G + E ++ L +LL +MDGF+    V 
Sbjct:   237 VRDMFEQAKKNAPCIVFIDEIDAVGRHRGAGYGGGNDEREQTLNQLLVEMDGFEANEGVI 296

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSR 116
             ++ ATNR D LDPALLRPGR DR +    PD + +  +  ++     L  +VDL      
Sbjct:   297 ILAATNRKDVLDPALLRPGRFDRNVTVGNPDIKGREKILGVHARKTPLGPDVDLRIIARG 356

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
                 S A++A +  EA + A R  R  +  +DFE
Sbjct:   357 TPGFSGADLANLVNEAALMAARVGRRFVTMEDFE 390


>TIGR_CMR|SO_1197 [details] [associations]
            symbol:SO_1197 "ATP-dependent metalloprotease FtsH"
            species:211586 "Shewanella oneidensis MR-1" [GO:0004222
            "metalloendopeptidase activity" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0051301 "cell division" evidence=ISS]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0006200
            GO:GO:0006508 GO:GO:0004222 GO:GO:0016887 EMBL:AE014299
            GenomeReviews:AE014299_GR GO:GO:0030163 TIGRFAMs:TIGR01241
            HSSP:P28691 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
            OMA:RSIIDQC RefSeq:NP_716822.2 ProteinModelPortal:Q8EHM2 SMR:Q8EHM2
            GeneID:1169025 KEGG:son:SO_1197 PATRIC:23522048
            ProtClustDB:CLSK906146 Uniprot:Q8EHM2
        Length = 652

 Score = 271 (100.5 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 62/155 (40%), Positives = 91/155 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F  AK++AP IIFIDE+DA+   R     G   E ++ L ++L +MDGF+    + 
Sbjct:   238 VRDMFEQAKKSAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 297

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSR 116
             VI ATNR D LD ALLRPGR DR++   LPD R +  + +++     LS++V        
Sbjct:   298 VIAATNRPDVLDSALLRPGRFDRQVVVGLPDVRGREQILKVHMRKVPLSEDVKASVIARG 357

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
                 S A++A +  EA + A R NR V+  ++FE+
Sbjct:   358 TPGFSGADLANLVNEAALFAARGNRRVVGMEEFER 392


>UNIPROTKB|Q6GL04 [details] [associations]
            symbol:vcp "Transitional endoplasmic reticulum ATPase"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0000785
            "chromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0006200 "ATP catabolic
            process" evidence=ISS] [GO:0006302 "double-strand break repair"
            evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
            evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0018279 "protein
            N-linked glycosylation via asparagine" evidence=ISS] [GO:0019985
            "translesion synthesis" evidence=ISS] [GO:0030433 "ER-associated
            protein catabolic process" evidence=ISS] [GO:0032403 "protein
            complex binding" evidence=ISS] [GO:0034214 "protein hexamerization"
            evidence=ISS] [GO:0035861 "site of double-strand break"
            evidence=ISS] [GO:0035101 "FACT complex" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0032403 GO:GO:0006810
            GO:GO:0000785 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
            GO:GO:0030433 GO:GO:0006302 HSSP:Q01853 eggNOG:COG0464
            GO:GO:0018279 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 HOGENOM:HOG000223224 KO:K13525
            InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034214
            GO:GO:0035861 GO:GO:0019985 CTD:7415 OrthoDB:EOG45TCMK
            EMBL:BC074716 RefSeq:NP_001005677.1 UniGene:Str.1287
            ProteinModelPortal:Q6GL04 SMR:Q6GL04 STRING:Q6GL04 PRIDE:Q6GL04
            GeneID:448177 KEGG:xtr:448177 Xenbase:XB-GENE-969573
            InParanoid:Q6GL04 Uniprot:Q6GL04
        Length = 805

 Score = 272 (100.8 bits), Expect = 1.4e-22, P = 1.4e-22
 Identities = 64/148 (43%), Positives = 92/148 (62%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F  A++NAPAIIFIDE+DAIA  R   +T  + E +RI+ +LL  MDG  Q  +V 
Sbjct:   286 LRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVI 342

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             V+ ATNR +++DPAL R GR DR+++  +PD   +  + Q     M LSD+VDLE   + 
Sbjct:   343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDSTGRLEILQIHTKNMKLSDDVDLEQVANE 402

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                   A++AA+C EA + A+RK   +I
Sbjct:   403 THGHVGADLAALCSEAALQAIRKKMDLI 430

 Score = 259 (96.2 bits), Expect = 3.6e-21, P = 3.6e-21
 Identities = 55/144 (38%), Positives = 85/144 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++F  A++ AP ++F DE+D+IA AR            R++ ++L +MDG     NV 
Sbjct:   559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D +DPA+LRPGRLD+ I  PLPD + +  + + NL     + +VDL+     
Sbjct:   619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRIAILKANLRKSPVAKDVDLDFLAKM 678

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
              +  S A++  ICQ A   A+R++
Sbjct:   679 TNGFSGADLTEICQRACKLAIRES 702


>UNIPROTKB|P23787 [details] [associations]
            symbol:vcp "Transitional endoplasmic reticulum ATPase"
            species:8355 "Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
            [GO:0006302 "double-strand break repair" evidence=ISS] [GO:0006974
            "response to DNA damage stimulus" evidence=ISS] [GO:0016567
            "protein ubiquitination" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=IDA] [GO:0018279 "protein N-linked glycosylation
            via asparagine" evidence=ISS] [GO:0019985 "translesion synthesis"
            evidence=ISS] [GO:0030433 "ER-associated protein catabolic process"
            evidence=ISS] [GO:0032403 "protein complex binding" evidence=IPI]
            [GO:0034214 "protein hexamerization" evidence=IDA] [GO:0035861
            "site of double-strand break" evidence=ISS] [GO:0035101 "FACT
            complex" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0006810
            GO:GO:0000785 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
            GO:GO:0030433 GO:GO:0006302 GO:GO:0018279 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034214
            GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226 CTD:7415 EMBL:X54240
            EMBL:BC046949 PIR:S19738 RefSeq:NP_001095217.1 UniGene:Xl.8775
            ProteinModelPortal:P23787 SMR:P23787 PRIDE:P23787 GeneID:380491
            KEGG:xla:380491 Xenbase:XB-GENE-969578 Uniprot:P23787
        Length = 805

 Score = 272 (100.8 bits), Expect = 1.4e-22, P = 1.4e-22
 Identities = 64/148 (43%), Positives = 92/148 (62%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F  A++NAPAIIFIDE+DAIA  R   +T  + E +RI+ +LL  MDG  Q  +V 
Sbjct:   286 LRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVI 342

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             V+ ATNR +++DPAL R GR DR+++  +PD   +  + Q     M LSD+VDLE   + 
Sbjct:   343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDSTGRLEILQIHTKNMKLSDDVDLEQVANE 402

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                   A++AA+C EA + A+RK   +I
Sbjct:   403 THGHVGADLAALCSEAALQAIRKKMDLI 430

 Score = 256 (95.2 bits), Expect = 7.5e-21, P = 7.5e-21
 Identities = 54/144 (37%), Positives = 85/144 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++F  A++ AP ++F DE+D+IA AR            R++ ++L +MDG     NV 
Sbjct:   559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSIKKNVF 618

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D +DPA+LRPGRLD+ I  PLPD + +  + + NL     + +VD++     
Sbjct:   619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRMAILKANLRKSPVAKDVDVDFLAKM 678

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
              +  S A++  ICQ A   A+R++
Sbjct:   679 TNGFSGADLTEICQRACKLAIRES 702


>DICTYBASE|DDB_G0278435 [details] [associations]
            symbol:DDB_G0278435 "AAA ATPase domain-containing
            protein" species:44689 "Dictyostelium discoideum" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
            evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            dictyBase:DDB_G0278435 GO:GO:0005524 EMBL:AAFI02000023
            GO:GO:0016887 eggNOG:COG0464 KO:K14575 InterPro:IPR009010
            SUPFAM:SSF50692 RefSeq:XP_642364.1 ProteinModelPortal:Q54Y38
            EnsemblProtists:DDB0237527 GeneID:8621569 KEGG:ddi:DDB_G0278435
            InParanoid:Q54Y38 OMA:TSICREA Uniprot:Q54Y38
        Length = 886

 Score = 272 (100.8 bits), Expect = 1.7e-22, P = 1.7e-22
 Identities = 65/176 (36%), Positives = 102/176 (57%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F+ A++N+P+I+F DE+D +A +R    +GA   V+R++ +LL +MDG     NV 
Sbjct:   704 VRDIFKKARQNSPSILFFDEIDGLAISRSGEGSGA---VERVVSQLLTEMDGIQPLTNVT 760

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D +D A+LR GR+DR +    PD   ++ +F ++L     S ++D+      
Sbjct:   761 IIGATNRPDIIDKAILRAGRIDRILYISPPDLDARKEIFNIHLKKVPHSSDIDINQLSIL 820

Query:   117 PDKISAAEIAAICQEAGMHAVRK--NRYVILPKDFEKGYRTNVKKPDTD--FEFYK 168
              D  S AE+ +IC+EA + A+++  N   I    F      NVKK  T    +FYK
Sbjct:   821 TDGYSGAEVTSICREASIAAMKEDINAKEINMSHFISAIG-NVKKGITQEMLDFYK 875

 Score = 110 (43.8 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
 Identities = 27/81 (33%), Positives = 48/81 (59%)

Query:    60 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR--RQKRL-VFQMNLSDEVDLEDYV-- 114
             V VI  TNR D++D AL RPGR D +IE  +P++  R++ L +F   + +++  ++    
Sbjct:   469 VIVIGCTNRPDSIDSALRRPGRFDNEIEISIPNQQGREQILNIFLSKIPNQLTSQEIAMI 528

Query:   115 -SRPDKISAAEIAAICQEAGM 134
              S+      A+I ++C+EA +
Sbjct:   529 ASKTHGFVGADIESLCKEASL 549

 Score = 89 (36.4 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
 Identities = 21/56 (37%), Positives = 34/56 (60%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQT 57
             ++ +F+ A + +P+IIFIDE+DA+   R D  +  ++   RI+  LL  MDG   T
Sbjct:   394 LQKIFKDAAQKSPSIIFIDELDALCPKREDNSSEVEK---RIVGSLLTLMDGVVST 446


>CGD|CAL0000075 [details] [associations]
            symbol:AFG3 species:5476 "Candida albicans" [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0005745 "m-AAA complex"
            evidence=IEA] [GO:0097002 "mitochondrial inner boundary membrane"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508
            "proteolysis" evidence=IEA] [GO:0006461 "protein complex assembly"
            evidence=IEA] [GO:0006465 "signal peptide processing" evidence=IEA]
            [GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0016887
            "ATPase activity" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 CGD:CAL0000075
            GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0008270
            GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465 KO:K08956
            GO:GO:0017111 TIGRFAMs:TIGR01241 MEROPS:M41.002 EMBL:AACQ01000014
            EMBL:AACQ01000013 RefSeq:XP_721627.1 RefSeq:XP_721746.1
            ProteinModelPortal:Q5AJC2 SMR:Q5AJC2 STRING:Q5AJC2 GeneID:3636589
            GeneID:3636771 KEGG:cal:CaO19.1669 KEGG:cal:CaO19.9238
            Uniprot:Q5AJC2
        Length = 795

 Score = 255 (94.8 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
 Identities = 51/104 (49%), Positives = 72/104 (69%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F+ A+E APAIIF+DE+DAI   R + + G + E +  L +LL +MDGFD T +V 
Sbjct:   368 VRDLFKTAREMAPAIIFVDEIDAIGKERGNGRMGGNDERENTLNQLLVEMDGFDTTDHVV 427

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS 105
             V+  TNR D LD ALLRPGR DR I   +PD   ++ +F+++L+
Sbjct:   428 VLAGTNRPDILDKALLRPGRFDRHISIDVPDVEGRKQIFKVHLN 471

 Score = 41 (19.5 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
 Identities = 17/66 (25%), Positives = 30/66 (45%)

Query:    92 DRRQKRLVFQ--MNLSDEVDLEDYVSRPDKIS----AAEIAAICQEAGMHAVRKNRYVIL 145
             D +QK + F     L +E ++E    R   ++     A+IA  C E  + A R++   + 
Sbjct:   482 DAKQKDVDFSKYQQLKNE-EIEKLAGRLAALTPGFAGADIANCCNEGALIAAREDAPAVD 540

Query:   146 PKDFEK 151
                FE+
Sbjct:   541 TYHFEQ 546


>UNIPROTKB|Q5AJC2 [details] [associations]
            symbol:AFG3 "Putative uncharacterized protein"
            species:237561 "Candida albicans SC5314" [GO:0005886 "plasma
            membrane" evidence=IDA] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 CGD:CAL0000075
            GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0008270
            GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465 KO:K08956
            GO:GO:0017111 TIGRFAMs:TIGR01241 MEROPS:M41.002 EMBL:AACQ01000014
            EMBL:AACQ01000013 RefSeq:XP_721627.1 RefSeq:XP_721746.1
            ProteinModelPortal:Q5AJC2 SMR:Q5AJC2 STRING:Q5AJC2 GeneID:3636589
            GeneID:3636771 KEGG:cal:CaO19.1669 KEGG:cal:CaO19.9238
            Uniprot:Q5AJC2
        Length = 795

 Score = 255 (94.8 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
 Identities = 51/104 (49%), Positives = 72/104 (69%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F+ A+E APAIIF+DE+DAI   R + + G + E +  L +LL +MDGFD T +V 
Sbjct:   368 VRDLFKTAREMAPAIIFVDEIDAIGKERGNGRMGGNDERENTLNQLLVEMDGFDTTDHVV 427

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS 105
             V+  TNR D LD ALLRPGR DR I   +PD   ++ +F+++L+
Sbjct:   428 VLAGTNRPDILDKALLRPGRFDRHISIDVPDVEGRKQIFKVHLN 471

 Score = 41 (19.5 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
 Identities = 17/66 (25%), Positives = 30/66 (45%)

Query:    92 DRRQKRLVFQ--MNLSDEVDLEDYVSRPDKIS----AAEIAAICQEAGMHAVRKNRYVIL 145
             D +QK + F     L +E ++E    R   ++     A+IA  C E  + A R++   + 
Sbjct:   482 DAKQKDVDFSKYQQLKNE-EIEKLAGRLAALTPGFAGADIANCCNEGALIAAREDAPAVD 540

Query:   146 PKDFEK 151
                FE+
Sbjct:   541 TYHFEQ 546


>UNIPROTKB|Q2GFA1 [details] [associations]
            symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
            species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
            evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
            "ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005886 GO:GO:0005524 GO:GO:0046872 EMBL:CP000236
            GenomeReviews:CP000236_GR GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465
            TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 OMA:ENMSYST
            MEROPS:M41.001 ProtClustDB:CLSK749654 RefSeq:YP_507882.1
            ProteinModelPortal:Q2GFA1 SMR:Q2GFA1 STRING:Q2GFA1 GeneID:3927708
            KEGG:ech:ECH_1098 PATRIC:20577534
            BioCyc:ECHA205920:GJNR-1101-MONOMER Uniprot:Q2GFA1
        Length = 610

 Score = 268 (99.4 bits), Expect = 2.2e-22, P = 2.2e-22
 Identities = 58/154 (37%), Positives = 88/154 (57%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F   K+NAP IIFIDE+DA+   R     G + E ++ L +LL +MDGF+    V 
Sbjct:   237 VRDMFEQGKKNAPCIIFIDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESNEGVI 296

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D LD ALLRPGR DR++   +PD   +  +  +++     + +V++      
Sbjct:   297 IIAATNRPDVLDSALLRPGRFDRQVTISIPDINGREKIINVHIKKVPTAPDVNIRTIARG 356

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
                 S A++A +  EA + A R N+ ++   DFE
Sbjct:   357 TPGFSGADLANLVNEAALIAARLNKKIVTMSDFE 390


>TIGR_CMR|ECH_1098 [details] [associations]
            symbol:ECH_1098 "ATP-dependent metalloprotease FtsH"
            species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
            GO:GO:0046872 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0008270
            GO:GO:0006508 GO:GO:0004222 GO:GO:0016887 GO:GO:0000910
            GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
            HOGENOM:HOG000217276 KO:K03798 OMA:ENMSYST MEROPS:M41.001
            ProtClustDB:CLSK749654 RefSeq:YP_507882.1 ProteinModelPortal:Q2GFA1
            SMR:Q2GFA1 STRING:Q2GFA1 GeneID:3927708 KEGG:ech:ECH_1098
            PATRIC:20577534 BioCyc:ECHA205920:GJNR-1101-MONOMER Uniprot:Q2GFA1
        Length = 610

 Score = 268 (99.4 bits), Expect = 2.2e-22, P = 2.2e-22
 Identities = 58/154 (37%), Positives = 88/154 (57%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F   K+NAP IIFIDE+DA+   R     G + E ++ L +LL +MDGF+    V 
Sbjct:   237 VRDMFEQGKKNAPCIIFIDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESNEGVI 296

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D LD ALLRPGR DR++   +PD   +  +  +++     + +V++      
Sbjct:   297 IIAATNRPDVLDSALLRPGRFDRQVTISIPDINGREKIINVHIKKVPTAPDVNIRTIARG 356

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
                 S A++A +  EA + A R N+ ++   DFE
Sbjct:   357 TPGFSGADLANLVNEAALIAARLNKKIVTMSDFE 390


>UNIPROTKB|H9KYT1 [details] [associations]
            symbol:LOC430766 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0017111 InterPro:IPR015415 Pfam:PF09336
            PANTHER:PTHR23077:SF18 GeneTree:ENSGT00700000104534
            EMBL:AADN02071262 Ensembl:ENSGALT00000000527 OMA:NRRTHAK
            Uniprot:H9KYT1
        Length = 538

 Score = 266 (98.7 bits), Expect = 2.5e-22, P = 2.5e-22
 Identities = 63/148 (42%), Positives = 92/148 (62%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F  A++NAPAIIFIDE+DAIA  R   +T  + E +RI+ +LL  MDG  Q  +V 
Sbjct:    18 LRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVI 74

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             V+ ATNR +++DPAL R GR DR+++  +PD   +  + Q     M L+D+VDLE   + 
Sbjct:    75 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVGNE 134

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                   A++AA+C EA + A+RK   +I
Sbjct:   135 THGHVGADLAALCSEAALQAIRKKMDLI 162

 Score = 259 (96.2 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 55/144 (38%), Positives = 85/144 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++F  A++ AP ++F DE+D+IA AR            R++ ++L +MDG     NV 
Sbjct:   291 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 350

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D +DPA+LRPGRLD+ I  PLPD + +  + + NL     + +VDL+     
Sbjct:   351 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLDFLAKM 410

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
              +  S A++  ICQ A   A+R++
Sbjct:   411 TNGFSGADLTEICQRACKLAIRES 434


>ZFIN|ZDB-GENE-030131-5408 [details] [associations]
            symbol:vcp "valosin containing protein"
            species:7955 "Danio rerio" [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006974 "response to DNA
            damage stimulus" evidence=IEA;ISS] [GO:0016567 "protein
            ubiquitination" evidence=ISS] [GO:0035861 "site of double-strand
            break" evidence=ISS] [GO:0006302 "double-strand break repair"
            evidence=ISS] [GO:0018279 "protein N-linked glycosylation via
            asparagine" evidence=ISS] [GO:0019985 "translesion synthesis"
            evidence=ISS] [GO:0030433 "ER-associated protein catabolic process"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:2000058 "regulation of protein ubiquitination involved in
            ubiquitin-dependent protein catabolic process" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006810 "transport"
            evidence=IEA] [GO:0008289 "lipid binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0007049 "cell cycle" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359
            ZFIN:ZDB-GENE-030131-5408 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0006810 EMBL:CR318632 GO:GO:0016567 GO:GO:0007049
            GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 HSSP:Q01853
            eggNOG:COG0464 GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OMA:AYRPIHK GeneTree:ENSGT00700000104534
            GO:GO:0035861 GO:GO:0019985 CTD:7415 OrthoDB:EOG45TCMK
            EMBL:AB093594 EMBL:AY576993 EMBL:BC050488 EMBL:BC067384
            IPI:IPI00505091 RefSeq:NP_958889.1 UniGene:Dr.75122
            ProteinModelPortal:Q7ZU99 SMR:Q7ZU99 STRING:Q7ZU99 PRIDE:Q7ZU99
            Ensembl:ENSDART00000023779 GeneID:327197 KEGG:dre:327197
            InParanoid:Q76KA4 NextBio:20809924 Bgee:Q7ZU99 Uniprot:Q7ZU99
        Length = 806

 Score = 269 (99.8 bits), Expect = 3.0e-22, P = 3.0e-22
 Identities = 63/148 (42%), Positives = 92/148 (62%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F  A++NAPAIIFIDE+DAIA  R   +T  + E +RI+ +LL  MDG  Q  +V 
Sbjct:   286 LRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVI 342

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             V+ ATNR +++DPAL R GR DR+++  +PD   +  + Q     M L+D+VDLE   + 
Sbjct:   343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                   A++AA+C EA + A+RK   +I
Sbjct:   403 THGHVGADLAALCSEAALQAIRKKMDLI 430

 Score = 264 (98.0 bits), Expect = 1.0e-21, P = 1.0e-21
 Identities = 56/144 (38%), Positives = 85/144 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++F  A++ AP ++F DE+D+IA AR            R++ ++L +MDG     NV 
Sbjct:   559 VREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRVINQILTEMDGMSSKKNVF 618

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D +DPA+LRPGRLD+ I  PLPD + +  + + NL     S +VDL+     
Sbjct:   619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRIAILKANLRKSPISKDVDLDFLAKM 678

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
              +  S A++  ICQ A   A+R++
Sbjct:   679 TNGFSGADLTEICQRACKLAIRES 702


>UNIPROTKB|G3X757 [details] [associations]
            symbol:VCP "Transitional endoplasmic reticulum ATPase"
            species:9913 "Bos taurus" [GO:0070842 "aggresome assembly"
            evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IEA] [GO:0035861 "site of double-strand break"
            evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
            [GO:0031334 "positive regulation of protein complex assembly"
            evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
            cytosol" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA] [GO:0019903 "protein phosphatase binding"
            evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
            asparagine" evidence=IEA] [GO:0006919 "activation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0006302 "double-strand break repair"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0031334 GO:GO:0006919 GO:GO:0006302
            GO:GO:0000502 GO:GO:0006511 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            GO:GO:0045732 InterPro:IPR004201 PANTHER:PTHR23077:SF18
            Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            OMA:AYRPIHK GO:GO:0030970 GeneTree:ENSGT00700000104534
            GO:GO:0070842 UniGene:Bt.49331 EMBL:DAAA02023126
            ProteinModelPortal:G3X757 Ensembl:ENSBTAT00000019970 Uniprot:G3X757
        Length = 806

 Score = 269 (99.8 bits), Expect = 3.0e-22, P = 3.0e-22
 Identities = 63/148 (42%), Positives = 92/148 (62%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F  A++NAPAIIFIDE+DAIA  R   +T  + E +RI+ +LL  MDG  Q  +V 
Sbjct:   286 LRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVI 342

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             V+ ATNR +++DPAL R GR DR+++  +PD   +  + Q     M L+D+VDLE   + 
Sbjct:   343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                   A++AA+C EA + A+RK   +I
Sbjct:   403 THGHVGADLAALCSEAALQAIRKKMDLI 430

 Score = 262 (97.3 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 56/144 (38%), Positives = 85/144 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++F  A++ AP ++F DE+D+IA AR            R++ ++L +MDG     NV 
Sbjct:   559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D +DPA+LRPGRLD+ I  PLPD + +  + + NL     + +VDLE     
Sbjct:   619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
              +  S A++  ICQ A   A+R++
Sbjct:   679 TNGFSGADLTEICQRACKLAIRES 702


>UNIPROTKB|Q3ZBT1 [details] [associations]
            symbol:VCP "Transitional endoplasmic reticulum ATPase"
            species:9913 "Bos taurus" [GO:0019985 "translesion synthesis"
            evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
            [GO:0006974 "response to DNA damage stimulus" evidence=ISS]
            [GO:0006302 "double-strand break repair" evidence=ISS] [GO:0035861
            "site of double-strand break" evidence=ISS] [GO:0018279 "protein
            N-linked glycosylation via asparagine" evidence=ISS] [GO:0030433
            "ER-associated protein catabolic process" evidence=ISS] [GO:0005829
            "cytosol" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008289
            "lipid binding" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783 GO:GO:0005829
            GO:GO:0005524 GO:GO:0005634 GO:GO:0006810 GO:GO:0016567
            GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 HSSP:Q01853
            eggNOG:COG0464 GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
            EMBL:BC103125 IPI:IPI00710727 RefSeq:NP_001029466.1
            UniGene:Bt.49331 ProteinModelPortal:Q3ZBT1 SMR:Q3ZBT1 IntAct:Q3ZBT1
            STRING:Q3ZBT1 PRIDE:Q3ZBT1 GeneID:507345 KEGG:bta:507345 CTD:7415
            InParanoid:Q3ZBT1 OrthoDB:EOG45TCMK NextBio:20868019 Uniprot:Q3ZBT1
        Length = 806

 Score = 269 (99.8 bits), Expect = 3.0e-22, P = 3.0e-22
 Identities = 63/148 (42%), Positives = 92/148 (62%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F  A++NAPAIIFIDE+DAIA  R   +T  + E +RI+ +LL  MDG  Q  +V 
Sbjct:   286 LRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVI 342

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             V+ ATNR +++DPAL R GR DR+++  +PD   +  + Q     M L+D+VDLE   + 
Sbjct:   343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                   A++AA+C EA + A+RK   +I
Sbjct:   403 THGHVGADLAALCSEAALQAIRKKMDLI 430

 Score = 262 (97.3 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 56/144 (38%), Positives = 85/144 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++F  A++ AP ++F DE+D+IA AR            R++ ++L +MDG     NV 
Sbjct:   559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D +DPA+LRPGRLD+ I  PLPD + +  + + NL     + +VDLE     
Sbjct:   619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
              +  S A++  ICQ A   A+R++
Sbjct:   679 TNGFSGADLTEICQRACKLAIRES 702


>UNIPROTKB|P55072 [details] [associations]
            symbol:VCP "Transitional endoplasmic reticulum ATPase"
            species:9606 "Homo sapiens" [GO:0008289 "lipid binding"
            evidence=IEA] [GO:0005102 "receptor binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006888 "ER to Golgi
            vesicle-mediated transport" evidence=IEA] [GO:0032403 "protein
            complex binding" evidence=IEA] [GO:0042802 "identical protein
            binding" evidence=IEA] [GO:0051260 "protein homooligomerization"
            evidence=IEA] [GO:0070842 "aggresome assembly" evidence=IEA]
            [GO:0043231 "intracellular membrane-bounded organelle"
            evidence=ISS] [GO:0006919 "activation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=ISS]
            [GO:0006281 "DNA repair" evidence=NAS] [GO:0006974 "response to DNA
            damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006302 "double-strand break repair"
            evidence=IDA] [GO:0019904 "protein domain specific binding"
            evidence=IPI] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=NAS] [GO:0030970 "retrograde protein
            transport, ER to cytosol" evidence=IDA] [GO:0030433 "ER-associated
            protein catabolic process" evidence=IMP;TAS] [GO:0030968
            "endoplasmic reticulum unfolded protein response" evidence=TAS]
            [GO:0016887 "ATPase activity" evidence=TAS] [GO:0005783
            "endoplasmic reticulum" evidence=IDA] [GO:0016567 "protein
            ubiquitination" evidence=IDA;NAS] [GO:0042981 "regulation of
            apoptotic process" evidence=TAS] [GO:0045184 "establishment of
            protein localization" evidence=TAS] [GO:0019985 "translesion
            synthesis" evidence=IMP] [GO:0035861 "site of double-strand break"
            evidence=IDA] [GO:0018279 "protein N-linked glycosylation via
            asparagine" evidence=IMP] [GO:0032436 "positive regulation of
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
            [GO:0019903 "protein phosphatase binding" evidence=IPI] [GO:0045732
            "positive regulation of protein catabolic process" evidence=IDA]
            [GO:0031334 "positive regulation of protein complex assembly"
            evidence=IDA] [GO:0031593 "polyubiquitin binding" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0031334
            GO:GO:0051260 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
            GO:GO:0006919 EMBL:CH471071 GO:GO:0030433 GO:GO:0006302
            GO:GO:0000502 eggNOG:COG0464 GO:GO:0018279 GO:GO:0031593
            GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336 Orphanet:803 PDB:3TIW
            PDBsum:3TIW GO:GO:0030968 HOGENOM:HOG000223224 KO:K13525
            InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
            GO:GO:0030970 TCDB:3.A.16.1.1 GO:GO:0070842 GO:GO:0035861
            GO:GO:0019985 EMBL:AC004472 EMBL:AL353795 PDB:3QC8 PDB:3QQ8
            PDB:3QWZ PDBsum:3QC8 PDBsum:3QQ8 PDBsum:3QWZ HOVERGEN:HBG001226
            PDB:3EBB PDBsum:3EBB CTD:7415 OrthoDB:EOG45TCMK EMBL:AF100752
            EMBL:AK312310 EMBL:BC110913 EMBL:BC121794 EMBL:Z70768
            IPI:IPI00022774 PIR:T02243 RefSeq:NP_009057.1 UniGene:Hs.529782
            PDB:3HU1 PDB:3HU2 PDB:3HU3 PDB:3QQ7 PDBsum:3HU1 PDBsum:3HU2
            PDBsum:3HU3 PDBsum:3QQ7 ProteinModelPortal:P55072 SMR:P55072
            DIP:DIP-33543N IntAct:P55072 MINT:MINT-272884 STRING:P55072
            PhosphoSite:P55072 DMDM:6094447 DOSAC-COBS-2DPAGE:P55072 OGP:P55072
            REPRODUCTION-2DPAGE:IPI00022774 REPRODUCTION-2DPAGE:P55072
            PaxDb:P55072 PRIDE:P55072 Ensembl:ENST00000358901 GeneID:7415
            KEGG:hsa:7415 UCSC:uc003zvy.2 GeneCards:GC09M035056 HGNC:HGNC:12666
            HPA:CAB005593 HPA:HPA012728 HPA:HPA012814 MIM:167320 MIM:601023
            MIM:613954 neXtProt:NX_P55072 Orphanet:52430 PharmGKB:PA37289
            InParanoid:P55072 BindingDB:P55072 ChEMBL:CHEMBL1075145 ChiTaRS:VCP
            EvolutionaryTrace:P55072 GenomeRNAi:7415 NextBio:29034
            ArrayExpress:P55072 Bgee:P55072 CleanEx:HS_VCP
            Genevestigator:P55072 GermOnline:ENSG00000165280 Uniprot:P55072
        Length = 806

 Score = 269 (99.8 bits), Expect = 3.0e-22, P = 3.0e-22
 Identities = 63/148 (42%), Positives = 92/148 (62%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F  A++NAPAIIFIDE+DAIA  R   +T  + E +RI+ +LL  MDG  Q  +V 
Sbjct:   286 LRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVI 342

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             V+ ATNR +++DPAL R GR DR+++  +PD   +  + Q     M L+D+VDLE   + 
Sbjct:   343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                   A++AA+C EA + A+RK   +I
Sbjct:   403 THGHVGADLAALCSEAALQAIRKKMDLI 430

 Score = 262 (97.3 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 56/144 (38%), Positives = 85/144 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++F  A++ AP ++F DE+D+IA AR            R++ ++L +MDG     NV 
Sbjct:   559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D +DPA+LRPGRLD+ I  PLPD + +  + + NL     + +VDLE     
Sbjct:   619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
              +  S A++  ICQ A   A+R++
Sbjct:   679 TNGFSGADLTEICQRACKLAIRES 702


>UNIPROTKB|P03974 [details] [associations]
            symbol:VCP "Transitional endoplasmic reticulum ATPase"
            species:9823 "Sus scrofa" [GO:0019985 "translesion synthesis"
            evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
            [GO:0006974 "response to DNA damage stimulus" evidence=ISS]
            [GO:0035861 "site of double-strand break" evidence=ISS] [GO:0006302
            "double-strand break repair" evidence=ISS] [GO:0018279 "protein
            N-linked glycosylation via asparagine" evidence=ISS] [GO:0030433
            "ER-associated protein catabolic process" evidence=ISS] [GO:0005829
            "cytosol" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008289
            "lipid binding" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783 GO:GO:0005829
            GO:GO:0005524 GO:GO:0005634 GO:GO:0006810 GO:GO:0016567
            GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 eggNOG:COG0464
            GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
            CTD:7415 OrthoDB:EOG45TCMK EMBL:M30143 PIR:A26360
            RefSeq:NP_999445.1 UniGene:Ssc.856 ProteinModelPortal:P03974
            SMR:P03974 STRING:P03974 GeneID:397524 KEGG:ssc:397524
            Uniprot:P03974
        Length = 806

 Score = 269 (99.8 bits), Expect = 3.0e-22, P = 3.0e-22
 Identities = 63/148 (42%), Positives = 92/148 (62%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F  A++NAPAIIFIDE+DAIA  R   +T  + E +RI+ +LL  MDG  Q  +V 
Sbjct:   286 LRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVI 342

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             V+ ATNR +++DPAL R GR DR+++  +PD   +  + Q     M L+D+VDLE   + 
Sbjct:   343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                   A++AA+C EA + A+RK   +I
Sbjct:   403 THGHVGADLAALCSEAALQAIRKKMDLI 430

 Score = 262 (97.3 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 56/144 (38%), Positives = 85/144 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++F  A++ AP ++F DE+D+IA AR            R++ ++L +MDG     NV 
Sbjct:   559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D +DPA+LRPGRLD+ I  PLPD + +  + + NL     + +VDLE     
Sbjct:   619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
              +  S A++  ICQ A   A+R++
Sbjct:   679 TNGFSGADLTEICQRACKLAIRES 702


>MGI|MGI:99919 [details] [associations]
            symbol:Vcp "valosin containing protein" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000502 "proteasome complex" evidence=ISO] [GO:0005102
            "receptor binding" evidence=ISO] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005783 "endoplasmic reticulum" evidence=ISO] [GO:0005829
            "cytosol" evidence=ISO] [GO:0006200 "ATP catabolic process"
            evidence=ISO] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006302
            "double-strand break repair" evidence=ISO] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IGI]
            [GO:0006810 "transport" evidence=IEA] [GO:0006888 "ER to Golgi
            vesicle-mediated transport" evidence=ISO] [GO:0006919 "activation
            of cysteine-type endopeptidase activity involved in apoptotic
            process" evidence=IDA] [GO:0006974 "response to DNA damage
            stimulus" evidence=ISO] [GO:0008289 "lipid binding" evidence=IEA]
            [GO:0016567 "protein ubiquitination" evidence=ISO] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase activity"
            evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
            asparagine" evidence=ISO] [GO:0019903 "protein phosphatase binding"
            evidence=ISO] [GO:0019904 "protein domain specific binding"
            evidence=ISO] [GO:0019985 "translesion synthesis" evidence=ISO]
            [GO:0030433 "ER-associated protein catabolic process" evidence=ISO]
            [GO:0030970 "retrograde protein transport, ER to cytosol"
            evidence=ISO] [GO:0031334 "positive regulation of protein complex
            assembly" evidence=ISO] [GO:0031593 "polyubiquitin binding"
            evidence=ISO;IDA] [GO:0032403 "protein complex binding"
            evidence=ISO] [GO:0032436 "positive regulation of proteasomal
            ubiquitin-dependent protein catabolic process" evidence=ISO]
            [GO:0035861 "site of double-strand break" evidence=ISO] [GO:0042802
            "identical protein binding" evidence=ISO] [GO:0043231
            "intracellular membrane-bounded organelle" evidence=ISO]
            [GO:0043234 "protein complex" evidence=IPI] [GO:0043531 "ADP
            binding" evidence=ISO] [GO:0045732 "positive regulation of protein
            catabolic process" evidence=ISO] [GO:0051260 "protein
            homooligomerization" evidence=ISO] [GO:0070842 "aggresome assembly"
            evidence=IGI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 MGI:MGI:99919 Pfam:PF02359
            GO:GO:0005783 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0043234 GO:GO:0031334 GO:GO:0051260 GO:GO:0016887
            GO:GO:0016567 GO:GO:0008289 GO:GO:0006919 GO:GO:0030433
            GO:GO:0006302 GO:GO:0000502 eggNOG:COG0464 GO:GO:0018279
            GO:GO:0031593 GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336
            KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
            GO:GO:0030970 GeneTree:ENSGT00700000104534 EMBL:AL672276
            GO:GO:0070842 GO:GO:0035861 GO:GO:0019985 PDB:2PJH PDBsum:2PJH
            PDB:1S3S PDBsum:1S3S HOVERGEN:HBG001226 CTD:7415 OrthoDB:EOG45TCMK
            ChiTaRS:VCP EMBL:Z14044 EMBL:AK028264 EMBL:AK030751 EMBL:AK149931
            EMBL:AK151109 EMBL:AK151418 EMBL:AK153249 EMBL:AK159177
            EMBL:AK159509 EMBL:AK167794 EMBL:AK169140 EMBL:BC043053
            EMBL:BC049114 IPI:IPI00622235 PIR:S25197 RefSeq:NP_033529.3
            UniGene:Mm.245976 PDB:1E32 PDB:1R7R PDB:3CF0 PDB:3CF1 PDB:3CF2
            PDB:3CF3 PDBsum:1E32 PDBsum:1R7R PDBsum:3CF0 PDBsum:3CF1
            PDBsum:3CF2 PDBsum:3CF3 DisProt:DP00435 ProteinModelPortal:Q01853
            SMR:Q01853 DIP:DIP-29796N IntAct:Q01853 MINT:MINT-220770
            STRING:Q01853 PhosphoSite:Q01853 REPRODUCTION-2DPAGE:Q01853
            UCD-2DPAGE:Q01853 PaxDb:Q01853 PRIDE:Q01853
            Ensembl:ENSMUST00000030164 GeneID:269523 KEGG:mmu:269523
            UCSC:uc008sor.2 InParanoid:Q01853 BindingDB:Q01853
            EvolutionaryTrace:Q01853 NextBio:392876 Bgee:Q01853 CleanEx:MM_VCP
            Genevestigator:Q01853 GermOnline:ENSMUSG00000028452 Uniprot:Q01853
        Length = 806

 Score = 269 (99.8 bits), Expect = 3.0e-22, P = 3.0e-22
 Identities = 63/148 (42%), Positives = 92/148 (62%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F  A++NAPAIIFIDE+DAIA  R   +T  + E +RI+ +LL  MDG  Q  +V 
Sbjct:   286 LRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVI 342

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             V+ ATNR +++DPAL R GR DR+++  +PD   +  + Q     M L+D+VDLE   + 
Sbjct:   343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                   A++AA+C EA + A+RK   +I
Sbjct:   403 THGHVGADLAALCSEAALQAIRKKMDLI 430

 Score = 262 (97.3 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 56/144 (38%), Positives = 85/144 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++F  A++ AP ++F DE+D+IA AR            R++ ++L +MDG     NV 
Sbjct:   559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D +DPA+LRPGRLD+ I  PLPD + +  + + NL     + +VDLE     
Sbjct:   619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
              +  S A++  ICQ A   A+R++
Sbjct:   679 TNGFSGADLTEICQRACKLAIRES 702


>RGD|621595 [details] [associations]
            symbol:Vcp "valosin-containing protein" species:10116 "Rattus
            norvegicus" [GO:0000502 "proteasome complex" evidence=IEA;ISO]
            [GO:0005102 "receptor binding" evidence=IDA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA;IMP]
            [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
            evidence=ISO] [GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA]
            [GO:0005829 "cytosol" evidence=ISO;IDA] [GO:0006200 "ATP catabolic
            process" evidence=IDA] [GO:0006302 "double-strand break repair"
            evidence=ISO;ISS] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0006888 "ER to Golgi
            vesicle-mediated transport" evidence=IMP] [GO:0006919 "activation
            of cysteine-type endopeptidase activity involved in apoptotic
            process" evidence=IEA;ISO] [GO:0006974 "response to DNA damage
            stimulus" evidence=ISO;ISS] [GO:0008289 "lipid binding"
            evidence=IEA] [GO:0016567 "protein ubiquitination"
            evidence=ISO;ISS] [GO:0016887 "ATPase activity" evidence=IDA]
            [GO:0018279 "protein N-linked glycosylation via asparagine"
            evidence=ISO;ISS] [GO:0019903 "protein phosphatase binding"
            evidence=IEA;ISO] [GO:0019904 "protein domain specific binding"
            evidence=IEA;ISO] [GO:0019985 "translesion synthesis"
            evidence=ISO;ISS] [GO:0030433 "ER-associated protein catabolic
            process" evidence=ISO;ISS] [GO:0030970 "retrograde protein
            transport, ER to cytosol" evidence=IEA;ISO] [GO:0031334 "positive
            regulation of protein complex assembly" evidence=IEA;ISO]
            [GO:0031593 "polyubiquitin binding" evidence=IEA;ISO] [GO:0032403
            "protein complex binding" evidence=IPI] [GO:0032436 "positive
            regulation of proteasomal ubiquitin-dependent protein catabolic
            process" evidence=ISO;IMP] [GO:0035861 "site of double-strand
            break" evidence=ISO;ISS] [GO:0042802 "identical protein binding"
            evidence=IDA] [GO:0043231 "intracellular membrane-bounded
            organelle" evidence=IDA] [GO:0043234 "protein complex"
            evidence=ISO] [GO:0043531 "ADP binding" evidence=IMP] [GO:0045732
            "positive regulation of protein catabolic process" evidence=ISO]
            [GO:0051260 "protein homooligomerization" evidence=IDA] [GO:0070842
            "aggresome assembly" evidence=IEA;ISO] [GO:0005730 "nucleolus"
            evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 RGD:621595 Pfam:PF02359
            GO:GO:0005783 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0031334 GO:GO:0051260 GO:GO:0005102 GO:GO:0016887
            GO:GO:0016567 GO:GO:0042802 GO:GO:0008289 GO:GO:0006919
            GO:GO:0030433 GO:GO:0006302 GO:GO:0000502 eggNOG:COG0464
            GO:GO:0018279 GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 GO:GO:0030970 GeneTree:ENSGT00700000104534
            GO:GO:0070842 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
            CTD:7415 OrthoDB:EOG45TCMK EMBL:U11760 EMBL:BC060518
            IPI:IPI00212014 PIR:A55190 RefSeq:NP_446316.1 UniGene:Rn.98891
            ProteinModelPortal:P46462 SMR:P46462 IntAct:P46462
            MINT:MINT-1954391 STRING:P46462 PhosphoSite:P46462
            World-2DPAGE:0004:P46462 PRIDE:P46462 Ensembl:ENSRNOT00000046102
            GeneID:116643 KEGG:rno:116643 UCSC:RGD:621595 InParanoid:P46462
            NextBio:619375 Genevestigator:P46462 GermOnline:ENSRNOG00000034242
            Uniprot:P46462
        Length = 806

 Score = 269 (99.8 bits), Expect = 3.0e-22, P = 3.0e-22
 Identities = 63/148 (42%), Positives = 92/148 (62%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F  A++NAPAIIFIDE+DAIA  R   +T  + E +RI+ +LL  MDG  Q  +V 
Sbjct:   286 LRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVI 342

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             V+ ATNR +++DPAL R GR DR+++  +PD   +  + Q     M L+D+VDLE   + 
Sbjct:   343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                   A++AA+C EA + A+RK   +I
Sbjct:   403 THGHVGADLAALCSEAALQAIRKKMDLI 430

 Score = 262 (97.3 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 56/144 (38%), Positives = 85/144 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++F  A++ AP ++F DE+D+IA AR            R++ ++L +MDG     NV 
Sbjct:   559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D +DPA+LRPGRLD+ I  PLPD + +  + + NL     + +VDLE     
Sbjct:   619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
              +  S A++  ICQ A   A+R++
Sbjct:   679 TNGFSGADLTEICQRACKLAIRES 702


>UNIPROTKB|F1SIH8 [details] [associations]
            symbol:VCP "Transitional endoplasmic reticulum ATPase"
            species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OMA:DIRRYEE GeneTree:ENSGT00700000104534
            EMBL:FP102396 Ensembl:ENSSSCT00000005837 ArrayExpress:F1SIH8
            Uniprot:F1SIH8
        Length = 808

 Score = 269 (99.8 bits), Expect = 3.1e-22, P = 3.1e-22
 Identities = 63/148 (42%), Positives = 92/148 (62%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F  A++NAPAIIFIDE+DAIA  R   +T  + E +RI+ +LL  MDG  Q  +V 
Sbjct:   286 LRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVI 342

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             V+ ATNR +++DPAL R GR DR+++  +PD   +  + Q     M L+D+VDLE   + 
Sbjct:   343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                   A++AA+C EA + A+RK   +I
Sbjct:   403 THGHVGADLAALCSEAALQAIRKKMDLI 430

 Score = 258 (95.9 bits), Expect = 4.6e-21, P = 4.6e-21
 Identities = 56/146 (38%), Positives = 85/146 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++F  A++ AP ++F DE+D+IA AR            R++ ++L +MDG     NV 
Sbjct:   559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-------SDEVDLEDYV 114
             +I ATNR D +DPA+LRPGRLD+ I  PLPD + +  + + NL       + +VDLE   
Sbjct:   619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKAGDVDLEFLA 678

Query:   115 SRPDKISAAEIAAICQEAGMHAVRKN 140
                +  S A++  ICQ A   A+R++
Sbjct:   679 KMTNGFSGADLTEICQRACKLAIRES 704


>UNIPROTKB|E2RLQ9 [details] [associations]
            symbol:VCP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0070842 "aggresome assembly" evidence=IEA]
            [GO:0045732 "positive regulation of protein catabolic process"
            evidence=IEA] [GO:0035861 "site of double-strand break"
            evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
            [GO:0031334 "positive regulation of protein complex assembly"
            evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
            cytosol" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA] [GO:0019903 "protein phosphatase binding"
            evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
            asparagine" evidence=IEA] [GO:0006919 "activation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0006302 "double-strand break repair"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0031334 GO:GO:0006919 GO:GO:0006302
            GO:GO:0000502 GO:GO:0006511 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            GO:GO:0045732 InterPro:IPR004201 PANTHER:PTHR23077:SF18
            Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            OMA:AYRPIHK GO:GO:0030970 GeneTree:ENSGT00700000104534
            GO:GO:0070842 EMBL:AAEX03007949 Ensembl:ENSCAFT00000003151
            NextBio:20856352 Uniprot:E2RLQ9
        Length = 822

 Score = 269 (99.8 bits), Expect = 3.2e-22, P = 3.2e-22
 Identities = 63/148 (42%), Positives = 92/148 (62%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F  A++NAPAIIFIDE+DAIA  R   +T  + E +RI+ +LL  MDG  Q  +V 
Sbjct:   302 LRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVI 358

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             V+ ATNR +++DPAL R GR DR+++  +PD   +  + Q     M L+D+VDLE   + 
Sbjct:   359 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 418

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                   A++AA+C EA + A+RK   +I
Sbjct:   419 THGHVGADLAALCSEAALQAIRKKMDLI 446

 Score = 262 (97.3 bits), Expect = 1.8e-21, P = 1.8e-21
 Identities = 56/144 (38%), Positives = 85/144 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++F  A++ AP ++F DE+D+IA AR            R++ ++L +MDG     NV 
Sbjct:   575 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 634

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D +DPA+LRPGRLD+ I  PLPD + +  + + NL     + +VDLE     
Sbjct:   635 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 694

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
              +  S A++  ICQ A   A+R++
Sbjct:   695 TNGFSGADLTEICQRACKLAIRES 718


>CGD|CAL0004443 [details] [associations]
            symbol:orf19.2057 species:5476 "Candida albicans" [GO:0005745
            "m-AAA complex" evidence=IEA] [GO:0097002 "mitochondrial inner
            boundary membrane" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] [GO:0006508
            "proteolysis" evidence=IEA] [GO:0006461 "protein complex assembly"
            evidence=IEA] [GO:0006465 "signal peptide processing" evidence=IEA]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 CGD:CAL0004443 GO:GO:0016021
            GO:GO:0005524 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0030163 eggNOG:COG0465 KO:K08956 GO:GO:0017111
            TIGRFAMs:TIGR01241 EMBL:AACQ01000031 EMBL:AACQ01000030
            MEROPS:M41.003 RefSeq:XP_719505.1 RefSeq:XP_719629.1
            ProteinModelPortal:Q5AD10 SMR:Q5AD10 GeneID:3638753 GeneID:3638884
            KEGG:cal:CaO19.2057 KEGG:cal:CaO19.9604 Uniprot:Q5AD10
        Length = 846

 Score = 269 (99.8 bits), Expect = 3.3e-22, P = 3.3e-22
 Identities = 63/158 (39%), Positives = 94/158 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQ-TGADREVQRILMELLNQMDGFDQTVNV 60
             VRD+F+ A+ENAP+I+F+DE+DAI   R     TGA+ E +  L +LL +MDGFD + +V
Sbjct:   454 VRDLFKTARENAPSIVFVDEIDAIGKQRSKGNATGANDERETTLNQLLVEMDGFDTSDHV 513

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD---EVDLE-DYVSR 116
              V+  TNR D LD AL+RPGR DR +    P+   ++ +F ++L     + D++ D   R
Sbjct:   514 VVLAGTNRPDILDRALMRPGRFDRHVHIDNPELLGRKEIFDVHLQKITLQKDIDPDLSGR 573

Query:   117 PDKI----SAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
                +    S A+IA +C EA + A R N   +  + FE
Sbjct:   574 LAALTPGFSGADIANVCNEAALIAARYNAEFVTLRHFE 611


>UNIPROTKB|Q55700 [details] [associations]
            symbol:ftsH2 "ATP-dependent zinc metalloprotease FtsH 2"
            species:1111708 "Synechocystis sp. PCC 6803 substr. Kazusa"
            [GO:0010206 "photosystem II repair" evidence=IMP] [GO:0042651
            "thylakoid membrane" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0009523 "photosystem II" evidence=IDA]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0030163 eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241
            EMBL:BA000022 GenomeReviews:BA000022_GR GO:GO:0042651 GO:GO:0010206
            HOGENOM:HOG000217276 KO:K03798 PIR:S76378 RefSeq:NP_442160.1
            RefSeq:YP_005652219.1 ProteinModelPortal:Q55700 SMR:Q55700
            IntAct:Q55700 STRING:Q55700 MEROPS:M41.017 GeneID:12253438
            GeneID:952628 KEGG:syn:slr0228 KEGG:syy:SYNGTS_2266 PATRIC:23841938
            OMA:NTASTRM Uniprot:Q55700
        Length = 627

 Score = 266 (98.7 bits), Expect = 3.8e-22, P = 3.8e-22
 Identities = 56/148 (37%), Positives = 87/148 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F+ AKENAP +IFIDE+DA+   R     G + E ++ L +LL +MDGF+    + 
Sbjct:   253 VRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGII 312

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSR 116
             +I ATNR D LD AL+RPGR DR++    PD   ++ + +++     L+ EV ++    R
Sbjct:   313 IIAATNRPDVLDSALMRPGRFDRQVMVDAPDYSGRKEILEVHARNKKLAPEVSIDSIARR 372

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                 S A++A +  EA +   R+ +  I
Sbjct:   373 TPGFSGADLANLLNEAAILTARRRKSAI 400


>TAIR|locus:2831844 [details] [associations]
            symbol:AtCDC48C "cell division cycle 48C" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0005618 "cell wall" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005829 "cytosol" evidence=IDA] [GO:0005794
            "Golgi apparatus" evidence=IDA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            Pfam:PF02359 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005794 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618
            EMBL:AL162751 GO:GO:0051301 GO:GO:0005856 GO:GO:0015031
            GO:GO:0007049 GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 GO:GO:0009524 UniGene:At.33291 HOGENOM:HOG000223224
            KO:K13525 ProtClustDB:CLSN2684913 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 EMBL:AK117125 EMBL:AK118571 EMBL:BT006485
            IPI:IPI00543476 RefSeq:NP_568114.1 ProteinModelPortal:Q9LZF6
            SMR:Q9LZF6 IntAct:Q9LZF6 STRING:Q9LZF6 PRIDE:Q9LZF6
            EnsemblPlants:AT5G03340.1 GeneID:831870 KEGG:ath:AT5G03340
            GeneFarm:1899 TAIR:At5g03340 InParanoid:Q9LZF6 OMA:AYRPIHK
            PhylomeDB:Q9LZF6 Genevestigator:Q9LZF6 GermOnline:AT5G03340
            Uniprot:Q9LZF6
        Length = 810

 Score = 268 (99.4 bits), Expect = 3.9e-22, P = 3.9e-22
 Identities = 63/165 (38%), Positives = 95/165 (57%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++F  A+++AP ++F DE+D+IAT R ++   A     R+L +LL +MDG +    V 
Sbjct:   562 VREIFDKARQSAPCVLFFDELDSIATQRGNSAGDAGGAADRVLNQLLTEMDGMNAKKTVF 621

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D +D ALLRPGRLD+ I  PLPD   +  +F+  L     + +VD+      
Sbjct:   622 IIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTALAKY 681

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPD 161
                 S A+I  ICQ A  +A+R+N    + KD E   R + + P+
Sbjct:   682 TQGFSGADITEICQRACKYAIREN----IEKDIENERRRS-QNPE 721

 Score = 241 (89.9 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 59/148 (39%), Positives = 89/148 (60%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F  A++NAP+IIFIDE+D+IA  R   +T  + E +RI+ +LL  MDG     +V 
Sbjct:   289 LRKAFEEAEKNAPSIIFIDEIDSIAPKR--EKTNGEVE-RRIVSQLLTLMDGLKSRAHVI 345

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             V+ ATNR +++DPAL R GR DR+I+  +PD   +  V +     M L+++VDLE     
Sbjct:   346 VMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKD 405

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                   A++AA+C EA +  +R+   VI
Sbjct:   406 THGYVGADLAALCTEAALQCIREKMDVI 433


>UNIPROTKB|P0C5C0 [details] [associations]
            symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
            species:1773 "Mycobacterium tuberculosis" [GO:0005829 "cytosol"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0006508 "proteolysis" evidence=IMP;IDA] [GO:0006979 "response
            to oxidative stress" evidence=IDA] [GO:0010468 "regulation of gene
            expression" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
            [GO:0030163 "protein catabolic process" evidence=IMP] [GO:0040007
            "growth" evidence=IMP] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005829 GO:GO:0005886
            GO:GO:0005524 GO:GO:0040007 GO:GO:0006979 EMBL:AE000516
            GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0046872
            EMBL:BX842583 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
            eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0010468
            HOGENOM:HOG000217276 KO:K03798 PIR:C70956 RefSeq:NP_218127.1
            RefSeq:NP_338259.1 RefSeq:YP_006517099.1 ProteinModelPortal:P0C5C0
            SMR:P0C5C0 PRIDE:P0C5C0 EnsemblBacteria:EBMYCT00000001212
            EnsemblBacteria:EBMYCT00000069111 GeneID:13317218 GeneID:885732
            GeneID:926520 KEGG:mtc:MT3714 KEGG:mtu:Rv3610c KEGG:mtv:RVBD_3610c
            PATRIC:18129921 TubercuList:Rv3610c OMA:RSEMIAR
            ProtClustDB:CLSK792593 Uniprot:P0C5C0
        Length = 760

 Score = 267 (99.0 bits), Expect = 4.5e-22, P = 4.5e-22
 Identities = 60/148 (40%), Positives = 87/148 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F  AK+N+P IIF+DE+DA+   R     G   E ++ L +LL +MDGF     V 
Sbjct:   244 VRDLFEQAKQNSPCIIFVDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRAGVI 303

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSR 116
             +I ATNR D LDPALLRPGR DR+I    PD   +R V +++     ++ + DL+    R
Sbjct:   304 LIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAKR 363

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                ++ A++A +  EA +   R+N  VI
Sbjct:   364 TVGMTGADLANVINEAALLTARENGTVI 391


>RGD|1309722 [details] [associations]
            symbol:Afg3l1 "AFG3(ATPase family gene 3)-like 1 (S.
            cerevisiae)" species:10116 "Rattus norvegicus" [GO:0004222
            "metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISO]
            [GO:0006508 "proteolysis" evidence=IEA] [GO:0007005 "mitochondrion
            organization" evidence=ISO] [GO:0008053 "mitochondrial fusion"
            evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0034982
            "mitochondrial protein processing" evidence=ISO] [GO:0042407
            "cristae formation" evidence=ISO] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 RGD:1309722
            GO:GO:0016021 GO:GO:0005739 GO:GO:0005524 GO:GO:0008270
            GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 GO:GO:0017111
            GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
            IPI:IPI00365343 Ensembl:ENSRNOT00000065957 UCSC:RGD:1309722
            ArrayExpress:F1LS61 Uniprot:F1LS61
        Length = 761

 Score = 267 (99.0 bits), Expect = 4.5e-22, P = 4.5e-22
 Identities = 62/159 (38%), Positives = 91/159 (57%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F +A+++AP I+FIDE+DAI   R     G   E +  L ++L +MDGF+ T NV 
Sbjct:   353 VRDMFAMARKHAPCILFIDEIDAIGRKRGRGHLGGQSEQENTLNQMLVEMDGFNSTTNVV 412

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS----DEVDLEDYVSRP 117
             V+  TNR D LDPAL RPGR DR+I    PD + +  +F+++L     DE    D +SR 
Sbjct:   413 VLAGTNRPDILDPALTRPGRFDRQIYIGPPDIKGRSSIFKVHLRPLKLDESLTRDALSRK 472

Query:   118 -----DKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
                     + A+I+ +C EA + A R     +  + FE+
Sbjct:   473 LAALTPGFTGADISNVCNEAALIAARHLSPSVQERHFEQ 511


>SGD|S000004389 [details] [associations]
            symbol:AFG2 "ATPase of the CDC48/PAS1/SEC18 (AAA) family,
            forms a hexameric complex" species:4932 "Saccharomyces cerevisiae"
            [GO:0030687 "preribosome, large subunit precursor"
            evidence=IDA;IMP] [GO:0042493 "response to drug" evidence=IMP]
            [GO:0005622 "intracellular" evidence=IDA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IDA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0042273 "ribosomal
            large subunit biogenesis" evidence=IMP] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 SGD:S000004389 GO:GO:0005524 GO:GO:0042493
            EMBL:BK006945 GO:GO:0016887 eggNOG:COG0464 HOGENOM:HOG000223225
            KO:K14575 OrthoDB:EOG49CTH0 GO:GO:0042273 EMBL:L14615 EMBL:U19729
            EMBL:AY693116 PIR:S39110 RefSeq:NP_013501.1
            ProteinModelPortal:P32794 SMR:P32794 DIP:DIP-4470N IntAct:P32794
            MINT:MINT-566202 STRING:P32794 PaxDb:P32794 PeptideAtlas:P32794
            EnsemblFungi:YLR397C GeneID:851113 KEGG:sce:YLR397C CYGD:YLR397c
            GeneTree:ENSGT00700000104502 OMA:MLLRCVA NextBio:967827
            Genevestigator:P32794 GermOnline:YLR397C GO:GO:0030687
            Uniprot:P32794
        Length = 780

 Score = 267 (99.0 bits), Expect = 4.7e-22, P = 4.7e-22
 Identities = 62/161 (38%), Positives = 95/161 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R++FR A+  AP+IIF DE+DA++  R  + T A      +L  LLN++DG ++   V 
Sbjct:   598 IREIFRKARSAAPSIIFFDEIDALSPDRDGSSTSA---ANHVLTSLLNEIDGVEELKGVV 654

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPD---RRQ--KRLVFQMNLSDE-VDLEDYVS 115
             ++ ATNR D +D ALLRPGRLDR I    PD   R +  K+   + N  +  VDL +   
Sbjct:   655 IVAATNRPDEIDAALLRPGRLDRHIYVGPPDVNARLEILKKCTKKFNTEESGVDLHELAD 714

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYV--ILPKDFEKGYR 154
             R +  S AE+  +CQEAG+ A+ ++  V  +  + FEK ++
Sbjct:   715 RTEGYSGAEVVLLCQEAGLAAIMEDLDVAKVELRHFEKAFK 755

 Score = 213 (80.0 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 57/148 (38%), Positives = 88/148 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQ-RILMELLNQMDGFDQTVNV 60
             +RD+F  A++  P+IIFIDE+D+IA  R +  +G   EV+ R++  LL  MDG      V
Sbjct:   327 LRDIFNEARKYQPSIIFIDEIDSIAPNRANDDSG---EVESRVVATLLTLMDGMGAAGKV 383

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPD--RRQKRLVFQMNL--SDE--VDLE--D 112
              VI ATNR +++DPAL RPGR D+++E  +PD   R   L  Q +   SD   +D E   
Sbjct:   384 VVIAATNRPNSVDPALRRPGRFDQEVEIGIPDVDARFDILTKQFSRMSSDRHVLDSEAIK 443

Query:   113 YV-SRPDKISAAEIAAICQEAGMHAVRK 139
             Y+ S+      A++ A+C+E+ M  +++
Sbjct:   444 YIASKTHGYVGADLTALCRESVMKTIQR 471


>ZFIN|ZDB-GENE-060312-22 [details] [associations]
            symbol:zgc:136908 "zgc:136908" species:7955 "Danio
            rerio" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 ZFIN:ZDB-GENE-060312-22
            GO:GO:0005524 eggNOG:COG0464 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 HOGENOM:HOG000223224
            InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            GeneTree:ENSGT00700000104534 HOVERGEN:HBG001226 EMBL:CU571167
            EMBL:BC114306 IPI:IPI00835697 RefSeq:NP_001035017.1
            UniGene:Dr.47664 SMR:Q29RA2 STRING:Q29RA2
            Ensembl:ENSDART00000100551 GeneID:563679 KEGG:dre:563679
            InParanoid:Q29RA2 OrthoDB:EOG4WWRMB NextBio:20885016 Uniprot:Q29RA2
        Length = 805

 Score = 267 (99.0 bits), Expect = 5.0e-22, P = 5.0e-22
 Identities = 61/144 (42%), Positives = 87/144 (60%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRDVF  A++ AP I+F DE+D+IA AR      A     R++ ++L +MDG     NV 
Sbjct:   561 VRDVFDKARQAAPCILFFDELDSIAKARGGGAGDAGGAADRVINQILTEMDGMTNKKNVF 620

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D +DPA+LRPGRLD+ I  PLPD   +  + + NL     + +VDL  Y+S+
Sbjct:   621 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDMPSRTAILRANLRKSPVAKDVDLM-YLSK 679

Query:   117 -PDKISAAEIAAICQEAGMHAVRK 139
               +  S A++  ICQ A   A+R+
Sbjct:   680 ITEGFSGADLTEICQRACKLAIRE 703

 Score = 260 (96.6 bits), Expect = 2.8e-21, P = 2.8e-21
 Identities = 63/148 (42%), Positives = 91/148 (61%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F  A++NAPAIIFIDE+DAIA  R   +T  + E +RI+ +LL  MDG  Q  +V 
Sbjct:   288 LRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVV 344

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             V+ ATNR +++D AL R GR DR+I+  +PD   +  + Q     M LS++VDLE   + 
Sbjct:   345 VMAATNRPNSVDAALRRFGRFDREIDIGIPDSTGRLEILQIHTKNMKLSEDVDLEQISAE 404

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                   A++AA+C EA + A+RK   +I
Sbjct:   405 THGHVGADLAALCSEAALQAIRKKMTLI 432


>FB|FBgn0261014 [details] [associations]
            symbol:TER94 "TER94" species:7227 "Drosophila melanogaster"
            [GO:0045169 "fusome" evidence=IDA;NAS] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0016887 "ATPase activity" evidence=NAS]
            [GO:0005783 "endoplasmic reticulum" evidence=NAS] [GO:0007030
            "Golgi organization" evidence=IMP] [GO:0007317 "regulation of pole
            plasm oskar mRNA localization" evidence=IMP] [GO:0016320
            "endoplasmic reticulum membrane fusion" evidence=ISS] [GO:0000226
            "microtubule cytoskeleton organization" evidence=IMP] [GO:0007029
            "endoplasmic reticulum organization" evidence=IMP] [GO:0045451
            "pole plasm oskar mRNA localization" evidence=IMP] [GO:0008103
            "oocyte microtubule cytoskeleton polarization" evidence=IMP]
            [GO:0008104 "protein localization" evidence=IMP] [GO:0042052
            "rhabdomere development" evidence=IMP] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0032436 "positive regulation of
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IMP] [GO:0000502 "proteasome complex" evidence=NAS]
            [GO:0006508 "proteolysis" evidence=IMP] [GO:0005811 "lipid
            particle" evidence=IDA] [GO:0005875 "microtubule associated
            complex" evidence=IDA] [GO:0030433 "ER-associated protein catabolic
            process" evidence=IMP] [GO:0006200 "ATP catabolic process"
            evidence=IGI] [GO:0048813 "dendrite morphogenesis" evidence=IMP]
            [GO:0043523 "regulation of neuron apoptotic process" evidence=IMP]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IMP]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 EMBL:AE013599 GO:GO:0007275
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005875 GO:GO:0000226
            GO:GO:0030154 GO:GO:0005811 GO:GO:0006810 GO:GO:0006200
            GO:GO:0048477 GO:GO:0030433 GO:GO:0000502 eggNOG:COG0464
            GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336 GO:GO:0007030
            GO:GO:0007029 GO:GO:0016320 GO:GO:0045169 KO:K13525
            InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            GeneTree:ENSGT00700000104534 GO:GO:0007317 EMBL:AF047037
            EMBL:AF202034 EMBL:AF132553 RefSeq:NP_001097249.1
            RefSeq:NP_001097250.1 RefSeq:NP_477369.1 UniGene:Dm.2968
            ProteinModelPortal:Q7KN62 SMR:Q7KN62 IntAct:Q7KN62 STRING:Q7KN62
            PaxDb:Q7KN62 PRIDE:Q7KN62 EnsemblMetazoa:FBtr0088391 GeneID:36040
            KEGG:dme:Dmel_CG2331 UCSC:CG2331-RA CTD:36040 FlyBase:FBgn0261014
            InParanoid:Q7KN62 OMA:RRGTDVN OrthoDB:EOG4TX96S GenomeRNAi:36040
            NextBio:796507 Bgee:Q7KN62 Uniprot:Q7KN62
        Length = 801

 Score = 266 (98.7 bits), Expect = 6.3e-22, P = 6.3e-22
 Identities = 61/161 (37%), Positives = 93/161 (57%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F  A+  AP ++F DE+D+IA AR      A     R++ ++L +MDG     NV 
Sbjct:   556 VRDIFDKARSAAPCVLFFDELDSIAKARGGNVGDAGGAADRVINQILTEMDGMGAKKNVF 615

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D +DPA+LRPGRLD+ I  PLPD + +  + + NL     + EVDL  Y+++
Sbjct:   616 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSREAILKANLRKSPLAKEVDLT-YIAK 674

Query:   117 PDK-ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156
               +  S A++  ICQ A   A+R+     + ++ E+    N
Sbjct:   675 VTQGFSGADLTEICQRACKLAIRQAIEAEIRREKERAENQN 715

 Score = 245 (91.3 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 60/149 (40%), Positives = 91/149 (61%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQR-ILMELLNQMDGFDQTVNV 60
             +R  F  A++N+PAIIFIDE+DAIA  R D   G   EV+R I+ +LL  MDG  ++ ++
Sbjct:   283 LRKAFEEAEKNSPAIIFIDEIDAIAPKR-DKTHG---EVERRIVSQLLTLMDGMKKSSHL 338

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
              V+ ATNR +++DPAL R GR DR+I+  +PD   +  V +     M L D+VDLE   +
Sbjct:   339 IVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVLRIHTKNMKLHDDVDLEQIAA 398

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVI 144
                    A++A++C EA +  +R+   +I
Sbjct:   399 ESHGHVGADLASLCSEAALQQIREKMDLI 427


>TAIR|locus:2085064 [details] [associations]
            symbol:CDC48 "cell division cycle 48" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0042802 "identical protein binding" evidence=IPI] [GO:0022626
            "cytosolic ribosome" evidence=IDA] [GO:0005618 "cell wall"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0046686 "response to cadmium ion" evidence=IEP;RCA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0005635 "nuclear envelope"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005819
            "spindle" evidence=IDA] [GO:0009524 "phragmoplast" evidence=IDA]
            [GO:0009846 "pollen germination" evidence=IMP] [GO:0009860 "pollen
            tube growth" evidence=IMP] [GO:0051301 "cell division"
            evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
            "plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
            [GO:0005794 "Golgi apparatus" evidence=IDA] [GO:0006486 "protein
            glycosylation" evidence=RCA] [GO:0016310 "phosphorylation"
            evidence=RCA] [GO:0042742 "defense response to bacterium"
            evidence=RCA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005886 GO:GO:0009506
            GO:GO:0005524 GO:GO:0005794 GO:GO:0005618 GO:GO:0046686
            GO:GO:0005635 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC015985
            GO:GO:0005730 GO:GO:0051301 GO:GO:0005819 GO:GO:0048046
            GO:GO:0015031 GO:GO:0007049 GO:GO:0009860 eggNOG:COG0464
            GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0022626 GO:GO:0009846 GO:GO:0009524 EMBL:U37587 EMBL:AY065076
            EMBL:AY094434 IPI:IPI00547533 PIR:S60112 RefSeq:NP_187595.1
            UniGene:At.21739 UniGene:At.33291 ProteinModelPortal:P54609
            SMR:P54609 IntAct:P54609 STRING:P54609 PaxDb:P54609 PRIDE:P54609
            ProMEX:P54609 EnsemblPlants:AT3G09840.1 GeneID:820142
            KEGG:ath:AT3G09840 GeneFarm:1893 TAIR:At3g09840
            HOGENOM:HOG000223224 InParanoid:P54609 KO:K13525 OMA:QIANECH
            PhylomeDB:P54609 ProtClustDB:CLSN2684913 Genevestigator:P54609
            GermOnline:AT3G09840 InterPro:IPR004201 PANTHER:PTHR23077:SF18
            Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            Uniprot:P54609
        Length = 809

 Score = 266 (98.7 bits), Expect = 6.4e-22, P = 6.4e-22
 Identities = 64/166 (38%), Positives = 94/166 (56%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTG-ADREVQRILMELLNQMDGFDQTVNV 60
             VR++F  A+++AP ++F DE+D+IAT R     G       R+L +LL +MDG +    V
Sbjct:   562 VREIFDKARQSAPCVLFFDELDSIATQRGGGSGGDGGGAADRVLNQLLTEMDGMNAKKTV 621

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVS 115
              +I ATNR D +D ALLRPGRLD+ I  PLPD   +  +F+  L     + +VD+     
Sbjct:   622 FIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIGALAK 681

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPD 161
                  S A+I  ICQ A  +A+R+N    + KD EK  R + + P+
Sbjct:   682 YTQGFSGADITEICQRACKYAIREN----IEKDIEKEKRRS-ENPE 722

 Score = 241 (89.9 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 59/148 (39%), Positives = 89/148 (60%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F  A++NAP+IIFIDE+D+IA  R   +T  + E +RI+ +LL  MDG     +V 
Sbjct:   289 LRKAFEEAEKNAPSIIFIDEIDSIAPKR--EKTNGEVE-RRIVSQLLTLMDGLKSRAHVI 345

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             V+ ATNR +++DPAL R GR DR+I+  +PD   +  V +     M L+++VDLE     
Sbjct:   346 VMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKD 405

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                   A++AA+C EA +  +R+   VI
Sbjct:   406 THGYVGADLAALCTEAALQCIREKMDVI 433


>POMBASE|SPBC543.09 [details] [associations]
            symbol:yta12 "mitochondrial m-AAA protease Yta12
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004222
            "metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=ISS] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0005745 "m-AAA complex" evidence=ISO] [GO:0006091 "generation
            of precursor metabolites and energy" evidence=NAS] [GO:0006465
            "signal peptide processing" evidence=ISO] [GO:0006508 "proteolysis"
            evidence=ISO] [GO:0008237 "metallopeptidase activity" evidence=ISO]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016887 "ATPase
            activity" evidence=ISO] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0033108 "mitochondrial respiratory chain complex
            assembly" evidence=ISO] [GO:0045041 "protein import into
            mitochondrial intermembrane space" evidence=ISO] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 PomBase:SPBC543.09
            GO:GO:0005524 GO:GO:0046872 EMBL:CU329671 GO:GO:0008270
            GO:GO:0006508 GO:GO:0008237 GO:GO:0004222 GO:GO:0006091
            GO:GO:0016887 GO:GO:0030163 eggNOG:COG0465 HOGENOM:HOG000217277
            KO:K08956 TIGRFAMs:TIGR01241 HSSP:Q9WZ49 OMA:LYRFVTT
            OrthoDB:EOG4J14HG GO:GO:0005745 GO:GO:0045041 GO:GO:0006465
            GO:GO:0033108 RefSeq:NP_596797.1 ProteinModelPortal:Q9HGM3
            SMR:Q9HGM3 STRING:Q9HGM3 MEROPS:M41.A14 EnsemblFungi:SPBC543.09.1
            GeneID:2541079 KEGG:spo:SPBC543.09 NextBio:20802192 Uniprot:Q9HGM3
        Length = 773

 Score = 265 (98.3 bits), Expect = 7.6e-22, P = 7.6e-22
 Identities = 63/158 (39%), Positives = 90/158 (56%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARF-DAQTGADREVQRILMELLNQMDGFDQTVNV 60
             VRD+F  A++NAP IIFIDE+DAI  AR    Q G++ E +  L +LL +MDGF  + ++
Sbjct:   377 VRDLFATARKNAPCIIFIDEIDAIGKARGRGGQFGSNDERESTLNQLLVEMDGFTSSEHI 436

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDL--EDY 113
              V   TNR D LDPALLRPGR DR+I    PD   +  +F+++L     +D +DL  +  
Sbjct:   437 VVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGREQIFKVHLKHIKAADNIDLIAKRL 496

Query:   114 VSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
                    + A+I  +C E  + A R N   +    FE+
Sbjct:   497 AVLTSGFTGADIMNVCNEGALIAARSNSNEVQMVHFEQ 534


>TIGR_CMR|GSU_1180 [details] [associations]
            symbol:GSU_1180 "cell division protein FtsH"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
            GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030163
            TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
            RefSeq:NP_952233.1 ProteinModelPortal:Q74DY5 SMR:Q74DY5
            GeneID:2686793 KEGG:gsu:GSU1180 PATRIC:22025134 OMA:VCQWGMS
            ProtClustDB:CLSK828230 BioCyc:GSUL243231:GH27-1166-MONOMER
            Uniprot:Q74DY5
        Length = 617

 Score = 263 (97.6 bits), Expect = 7.8e-22, P = 7.8e-22
 Identities = 60/155 (38%), Positives = 89/155 (57%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F  AK++AP+IIFIDE+DA+  +R     G   E ++ L +LL++MDGFD    V 
Sbjct:   256 VRDLFATAKKSAPSIIFIDELDAVGRSRGAGLGGGHDEREQTLNQLLSEMDGFDSHDEVI 315

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSR 116
             V+ ATNR D LDPALLRPGR DR +    PD R +  +  ++     L  +VDL      
Sbjct:   316 VMAATNRPDVLDPALLRPGRFDRHVVIDRPDWRDREKILHVHTRKIPLDKDVDLAVIARG 375

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
                ++ A++  +  EA + A R+N   +  +  E+
Sbjct:   376 TPGMAGADLENLVNEAAILAARENAATVTMEHMER 410


>POMBASE|SPBC56F2.07c [details] [associations]
            symbol:SPBC56F2.07c "ribosome biogenesis factor
            recycling AAA family ATPase (predicted)" species:4896
            "Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=ISM]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0016887 "ATPase activity"
            evidence=ISM] [GO:0042273 "ribosomal large subunit biogenesis"
            evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            PomBase:SPBC56F2.07c GO:GO:0005829 GO:GO:0005524 EMBL:CU329671
            GenomeReviews:CU329671_GR GO:GO:0016887 PIR:T40537
            RefSeq:NP_596710.1 HSSP:Q01853 ProteinModelPortal:O60058
            PRIDE:O60058 EnsemblFungi:SPBC56F2.07c.1 GeneID:2540537
            KEGG:spo:SPBC56F2.07c eggNOG:COG0464 HOGENOM:HOG000223225 KO:K14575
            OMA:SSENMAT OrthoDB:EOG49CTH0 NextBio:20801663 GO:GO:0042273
            Uniprot:O60058
        Length = 809

 Score = 265 (98.3 bits), Expect = 8.2e-22, P = 8.2e-22
 Identities = 57/144 (39%), Positives = 91/144 (63%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR VF+ A++ +P++IF DE+DA+   R     G D    R++  LLN++DG +   NV 
Sbjct:   630 VRQVFQKARQASPSVIFFDEIDALTANR-----GEDNSSDRVVAALLNELDGIEALRNVL 684

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPD-RRQKRLVF----QMNLSDEVDLEDYVSR 116
             V+ ATNR D +DPAL+RPGRLDR +    P+   +K++V     +M  +++VDL+    +
Sbjct:   685 VLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVDLDLIAEK 744

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
              +  S AE+ A+CQEAG+ A+ ++
Sbjct:   745 TEGCSGAEVVALCQEAGLIAMHED 768

 Score = 231 (86.4 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 57/153 (37%), Positives = 92/153 (60%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R +F  A+ + P+IIFIDE+DA+A  R +  + A+    R +  LL  +DG      V 
Sbjct:   361 LRKIFEDARAHQPSIIFIDEIDALAPKRTEDVSEAE---SRAVATLLTLLDGMANAGKVV 417

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS---DEVD---LEDYVS 115
             VI ATNR +++D AL RPGRL+++IE  +PD+  +  + ++ LS   +E++   LED  S
Sbjct:   418 VIAATNRPNSIDEALRRPGRLEKEIEIGIPDKSARLDIIKLLLSGVPNEINDAQLEDLAS 477

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKD 148
             R      A++AA+ +EA + A++  R + L KD
Sbjct:   478 RTHAYVGADLAAVVREAALRAIK--RTISLQKD 508


>TAIR|locus:2154568 [details] [associations]
            symbol:ftsh9 "FTSH protease 9" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
            evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0004176
            "ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0010304 "PSII associated
            light-harvesting complex II catabolic process" evidence=RCA]
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005524 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
            GO:GO:0009941 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
            TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535 EMBL:AB016885
            GO:GO:0004176 HOGENOM:HOG000217276 KO:K03798
            ProtClustDB:CLSN2689036 EMBL:AY059856 IPI:IPI00541670
            RefSeq:NP_568892.1 UniGene:At.7754 ProteinModelPortal:Q9FIM2
            SMR:Q9FIM2 STRING:Q9FIM2 MEROPS:M41.A03 PaxDb:Q9FIM2 PRIDE:Q9FIM2
            EnsemblPlants:AT5G58870.1 GeneID:836004 KEGG:ath:AT5G58870
            GeneFarm:2516 TAIR:At5g58870 InParanoid:Q9FIM2 OMA:SSKRGEN
            PhylomeDB:Q9FIM2 Genevestigator:Q9FIM2 Uniprot:Q9FIM2
        Length = 806

 Score = 264 (98.0 bits), Expect = 1.0e-21, P = 1.0e-21
 Identities = 64/158 (40%), Positives = 95/158 (60%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATAR---FDAQTGADREVQRILMELLNQMDGFDQTV 58
             VRD+F  AK+ AP+IIFIDE+DA+A +R   F   +  +RE  + L +LL +MDGFD + 
Sbjct:   410 VRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRMVSNDERE--QTLNQLLTEMDGFDSSS 467

Query:    59 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS-------DEVDLE 111
              V V+ ATNRAD LDPAL RPGR DR +    PD+  +  + ++++S       D+V+L 
Sbjct:   468 AVIVLGATNRADVLDPALRRPGRFDRVVTVESPDKVGRESILKVHVSKKELPLGDDVNLA 527

Query:   112 DYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 149
                S     + A++A +  EA + A RK++  +   DF
Sbjct:   528 SIASMTTGFTGADLANLVNEAALLAGRKSKMTVDKIDF 565


>CGD|CAL0002187 [details] [associations]
            symbol:orf19.6432 species:5476 "Candida albicans" [GO:0005829
            "cytosol" evidence=IEA] [GO:0030687 "preribosome, large subunit
            precursor" evidence=IEA] [GO:0042493 "response to drug"
            evidence=IEA] [GO:0042273 "ribosomal large subunit biogenesis"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            CGD:CAL0002187 GO:GO:0005524 EMBL:AACQ01000073 EMBL:AACQ01000072
            eggNOG:COG0464 KO:K14575 GO:GO:0017111 InterPro:IPR009010
            SUPFAM:SSF50692 SMART:SM01073 RefSeq:XP_716187.1 RefSeq:XP_716270.1
            ProteinModelPortal:Q5A331 GeneID:3642106 GeneID:3642160
            KEGG:cal:CaO19.13790 KEGG:cal:CaO19.6432 Uniprot:Q5A331
        Length = 766

 Score = 263 (97.6 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 70/181 (38%), Positives = 101/181 (55%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARF-DAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +R++FR A+  +P+IIF DE+DAIA  R  D+ T A      +L  LLN++DG ++   V
Sbjct:   581 IREIFRKARAASPSIIFFDEIDAIAGDRDGDSSTTA---ASNVLTSLLNEIDGVEELKGV 637

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLS--DE-VDLED 112
              ++ ATN+   +DPALLRPGRLDR I    PD   +  + Q      NL   DE VDL+ 
Sbjct:   638 VIVGATNKPTEIDPALLRPGRLDRHIYVAPPDYDARLQILQKCSRKFNLQSGDESVDLQK 697

Query:   113 YVSRPDKISAAEIAAICQEAGMHAVRKNRYV--ILPKDFE---KGYRTNVKKPDTDFEFY 167
                  D  S AE+  +CQEAG+ A+ +N+    +  K FE   KG    +  P+   E+Y
Sbjct:   698 LAELTDGCSGAEVTLLCQEAGLAAIMENKEATTVTNKHFEHALKGISRGIT-PEM-LEYY 755

Query:   168 K 168
             +
Sbjct:   756 E 756

 Score = 224 (83.9 bits), Expect = 1.9e-17, P = 1.9e-17
 Identities = 56/155 (36%), Positives = 91/155 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +RD+F  AK+  P+IIF+DE+D+IA +R    +G + E  R++ +LL  MDG      + 
Sbjct:   312 IRDIFNEAKKFQPSIIFMDEIDSIAPSRTSDDSG-ETE-SRVVAQLLTVMDGMGDNGRIV 369

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPD--RRQKRLVFQ---MNLSD-EVDLEDYVS 115
             VI ATNR +++D AL RPGR D+++E  +PD   R++ L  Q   MN    ++  E+  S
Sbjct:   370 VIGATNRPNSIDSALRRPGRFDQEVEIGIPDVEAREEILTKQFAKMNSEKCQITKEEIAS 429

Query:   116 RPDKISA---AEIAAICQEAGMHAVRKNRYVILPK 147
                K      A++ A+C+E+ M A+ +   V +P+
Sbjct:   430 IASKTHGYVGADLTALCRESVMKAINRGLTVGIPQ 464


>UNIPROTKB|F1P4V8 [details] [associations]
            symbol:LOC426240 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OMA:DIRRYEE GeneTree:ENSGT00700000104534
            EMBL:AADN02060646 EMBL:AADN02060647 EMBL:AADN02060648
            EMBL:AADN02060649 EMBL:AADN02060650 EMBL:AADN02060651
            EMBL:AADN02060652 EMBL:AADN02060653 IPI:IPI00585183
            Ensembl:ENSGALT00000003093 ArrayExpress:F1P4V8 Uniprot:F1P4V8
        Length = 810

 Score = 263 (97.6 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 63/150 (42%), Positives = 93/150 (62%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATAR-FDA-QTGADREVQRILMELLNQMDGFDQTVN 59
             +R  F   ++NAPAIIFIDE+DAIA+   F + QT  + E +RI+ +LL  MDG  Q  +
Sbjct:   286 LRKAFEETEKNAPAIIFIDELDAIASDDCFPSPQTHGEVE-RRIVSQLLTLMDGLKQRAH 344

Query:    60 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYV 114
             V V+ ATNR +++DPAL R GR DR+++  +PD   +  + Q     M L+D+VDLE   
Sbjct:   345 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVA 404

Query:   115 SRPDKISAAEIAAICQEAGMHAVRKNRYVI 144
             +       A++AA+C EA + A+RK   +I
Sbjct:   405 NETHGHVGADLAALCSEAALQAIRKKMDLI 434

 Score = 259 (96.2 bits), Expect = 3.6e-21, P = 3.6e-21
 Identities = 55/144 (38%), Positives = 85/144 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++F  A++ AP ++F DE+D+IA AR            R++ ++L +MDG     NV 
Sbjct:   563 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 622

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D +DPA+LRPGRLD+ I  PLPD + +  + + NL     + +VDL+     
Sbjct:   623 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLDFLAKM 682

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
              +  S A++  ICQ A   A+R++
Sbjct:   683 TNGFSGADLTEICQRACKLAIRES 706


>TIGR_CMR|BA_0064 [details] [associations]
            symbol:BA_0064 "cell division protein FtsH" species:198094
            "Bacillus anthracis str. Ames" [GO:0000910 "cytokinesis"
            evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
            evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
            "ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005886 GO:GO:0005524 GO:GO:0051301 GO:GO:0046872
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0008270
            GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
            GO:GO:0030163 HOGENOM:HOG000217277 TIGRFAMs:TIGR01241 KO:K03798
            ProtClustDB:CLSK886567 HSSP:Q9LCZ4 OMA:QINMEEV RefSeq:NP_842633.1
            RefSeq:YP_016667.1 RefSeq:YP_026351.1 ProteinModelPortal:Q81VX5
            SMR:Q81VX5 IntAct:Q81VX5 DNASU:1086600
            EnsemblBacteria:EBBACT00000009752 EnsemblBacteria:EBBACT00000016661
            EnsemblBacteria:EBBACT00000022411 GeneID:1086600 GeneID:2819677
            GeneID:2851579 KEGG:ban:BA_0064 KEGG:bar:GBAA_0064 KEGG:bat:BAS0064
            BioCyc:BANT260799:GJAJ-73-MONOMER BioCyc:BANT261594:GJ7F-75-MONOMER
            Uniprot:Q81VX5
        Length = 633

 Score = 261 (96.9 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 60/155 (38%), Positives = 88/155 (56%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F  AK+NAP IIFIDE+DA+   R     G   E ++ L +LL +MDGF     + 
Sbjct:   243 VRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGII 302

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSR 116
             +I ATNR D LDPALLRPGR DR+I    PD   +  V +++     L + ++L    +R
Sbjct:   303 IIAATNRPDILDPALLRPGRFDRQITVDRPDVNGREAVLKVHARNKPLDENINLRAIATR 362

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
                 S A++  +  EA + A R+++  I   D ++
Sbjct:   363 TPGFSGADLENLLNEAALVAARQDKKKIDMSDIDE 397


>UNIPROTKB|F1NXP0 [details] [associations]
            symbol:SPG7 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0006508 "proteolysis" evidence=IEA] [GO:0008270 "zinc
            ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
            "metalloendopeptidase activity" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=IEA] [GO:0007005 "mitochondrion
            organization" evidence=IEA] [GO:0008089 "anterograde axon cargo
            transport" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
            GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0008089
            GO:GO:0030163 GeneTree:ENSGT00530000063070 GO:GO:0017111
            TIGRFAMs:TIGR01241 GO:GO:0007005 OMA:MMDHEAK EMBL:AADN02054132
            IPI:IPI00601320 Ensembl:ENSGALT00000010016 Uniprot:F1NXP0
        Length = 768

 Score = 262 (97.3 bits), Expect = 1.6e-21, P = 1.6e-21
 Identities = 64/157 (40%), Positives = 94/157 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTG-ADREVQRILMELLNQMDGFDQTVNV 60
             VR +FR A+  AP I++IDE+DA+   R    +G A+ E ++ L +LL +MDG   T +V
Sbjct:   363 VRSLFREAQARAPCIVYIDEIDAVGKKRSTNVSGFANAEEEQTLNQLLVEMDGMGTTDHV 422

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSDEVDLED--YVSR-- 116
              V+ +TNRAD LD AL+RPGRLDR I   LP  +++R +F+ +L     ++D  + S+  
Sbjct:   423 IVLASTNRADVLDNALMRPGRLDRHIFIDLPTLQERREIFEQHLKGLKLIQDASFYSQHL 482

Query:   117 ---PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
                    S A+IA IC EA +HA R+    I   +FE
Sbjct:   483 AELTPGFSGADIANICNEAALHAAREGHKSIDTFNFE 519


>DICTYBASE|DDB_G0288065 [details] [associations]
            symbol:cdcD "CDC48 family AAA ATPase" species:44689
            "Dictyostelium discoideum" [GO:0005615 "extracellular space"
            evidence=IDA] [GO:0045335 "phagocytic vesicle" evidence=IDA]
            [GO:0009617 "response to bacterium" evidence=IEP] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0030433 "ER-associated protein catabolic process" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0007049 "cell
            cycle" evidence=ISS] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISS] [GO:0006200 "ATP catabolic
            process" evidence=ISS] [GO:0005829 "cytosol" evidence=ISS]
            [GO:0051301 "cell division" evidence=IEA] [GO:0044351
            "macropinocytosis" evidence=RCA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            dictyBase:DDB_G0288065 Pfam:PF02359 GO:GO:0005829 GO:GO:0005524
            GO:GO:0005615 GO:GO:0045335 GO:GO:0009617 GO:GO:0051301
            GenomeReviews:CM000154_GR GO:GO:0016887 GO:GO:0007049 GO:GO:0030433
            HSSP:Q01853 eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 EMBL:AAFI02000109 InterPro:IPR015415 Pfam:PF09336
            KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
            ProtClustDB:CLSZ2429060 EMBL:U83085 RefSeq:XP_636910.1
            ProteinModelPortal:P90532 SMR:P90532 STRING:P90532 PRIDE:P90532
            EnsemblProtists:DDB0191154 GeneID:8626465 KEGG:ddi:DDB_G0288065
            InParanoid:P90532 Uniprot:P90532
        Length = 793

 Score = 262 (97.3 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 63/169 (37%), Positives = 97/169 (57%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++F  A++ AP ++F DE+D+IA +R  +Q  A     R++ ++L +MDG +   NV 
Sbjct:   557 VRELFDKARQAAPCVLFFDELDSIARSRGSSQGDAGGAGDRVINQILTEMDGMNAKKNVF 616

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ--MNLSD---EVDLEDYVSR 116
             +I ATNR D +DPA+LRPGRLD+ I  PLPD   +  + +  +N S    +VDLE    +
Sbjct:   617 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDLPSRVAILKACLNKSPVAKDVDLEFLGQK 676

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFE 165
                 S A++  ICQ A   A+R++    + KD E   +   +  DT  E
Sbjct:   677 TQGFSGADLTEICQRACKLAIRES----IEKDIEST-KARQESGDTKME 720

 Score = 242 (90.2 bits), Expect = 2.3e-19, P = 2.3e-19
 Identities = 57/148 (38%), Positives = 86/148 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F  A++NAP+IIFIDE+D+IA  R   Q   +R   RI+ +LL  MDG     +V 
Sbjct:   284 LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTQGEVER---RIVSQLLTLMDGLKSRAHVI 340

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             V+ ATNR +++DPAL R GR DR+I+  +PD   +  + +     M L + VDLE   + 
Sbjct:   341 VMGATNRPNSIDPALRRFGRFDREIDITIPDATGRLEIMRIHTKNMKLDETVDLEAVANE 400

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                   A++AA+C E+ +  +R+   VI
Sbjct:   401 THGYVGADLAALCTESALQCIREKMDVI 428


>SGD|S000002284 [details] [associations]
            symbol:CDC48 "AAA ATPase involved in multiple processes"
            species:4932 "Saccharomyces cerevisiae" [GO:0005829 "cytosol"
            evidence=IDA] [GO:0043332 "mating projection tip" evidence=IDA]
            [GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0030433 "ER-associated protein catabolic process"
            evidence=IMP] [GO:0000837 "Doa10p ubiquitin ligase complex"
            evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0007049
            "cell cycle" evidence=IEA] [GO:0015031 "protein transport"
            evidence=IEA] [GO:0043231 "intracellular membrane-bounded
            organelle" evidence=IEA] [GO:1900182 "positive regulation of
            protein localization to nucleus" evidence=IMP] [GO:0051228 "mitotic
            spindle disassembly" evidence=IMP] [GO:0016320 "endoplasmic
            reticulum membrane fusion" evidence=IMP] [GO:0034517 "ribophagy"
            evidence=IMP] [GO:0071712 "ER-associated misfolded protein
            catabolic process" evidence=IMP] [GO:0030970 "retrograde protein
            transport, ER to cytosol" evidence=IMP] [GO:0034098
            "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IDA] [GO:0043161
            "proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IMP] [GO:0043130 "ubiquitin binding" evidence=IDA]
            [GO:0036266 "Cdc48p-Npl4p-Vms1p AAA ATPase complex" evidence=IDA]
            [GO:0071630 "nucleus-associated proteasomal ubiquitin-dependent
            protein catabolic process" evidence=IMP] [GO:0034727 "piecemeal
            microautophagy of nucleus" evidence=IMP] [GO:0016236
            "macroautophagy" evidence=IMP] [GO:0031134 "sister chromatid
            biorientation" evidence=IMP] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0072671 "mitochondria-associated protein
            catabolic process" evidence=IMP] [GO:0071629 "cytoplasm-associated
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IMP] [GO:0005789 "endoplasmic reticulum membrane"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 SGD:S000002284 Pfam:PF02359
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0043332
            EMBL:BK006938 GO:GO:0016887 eggNOG:COG0464 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 GO:GO:0016236 GO:GO:0031134
            GO:GO:0043130 GO:GO:0034727 GO:GO:0016320 GO:GO:0034517
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OrthoDB:EOG47H8Z3 GO:GO:0034098 GO:GO:0030970
            EMBL:X56956 EMBL:Z74174 PIR:S67669 RefSeq:NP_010157.1
            ProteinModelPortal:P25694 SMR:P25694 DIP:DIP-2704N IntAct:P25694
            MINT:MINT-547129 STRING:P25694 TCDB:3.A.16.1.2 PaxDb:P25694
            PeptideAtlas:P25694 PRIDE:P25694 EnsemblFungi:YDL126C GeneID:851431
            KEGG:sce:YDL126C CYGD:YDL126c GeneTree:ENSGT00700000104534
            OMA:TIPRITW NextBio:968654 Genevestigator:P25694 GermOnline:YDL126C
            GO:GO:0036266 GO:GO:0000837 GO:GO:0071629 GO:GO:0071712
            GO:GO:0072671 GO:GO:0051228 GO:GO:0071630 GO:GO:1900182
            Uniprot:P25694
        Length = 835

 Score = 261 (96.9 bits), Expect = 2.3e-21, P = 2.3e-21
 Identities = 65/154 (42%), Positives = 93/154 (60%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQR-ILMELLNQMDGFDQTVNV 60
             +R  F  A++NAPAIIFIDE+D+IA  R D   G   EV+R ++ +LL  MDG     NV
Sbjct:   296 LRKAFEEAEKNAPAIIFIDEIDSIAPKR-DKTNG---EVERRVVSQLLTLMDGMKARSNV 351

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
              VI ATNR +++DPAL R GR DR+++  +PD   +  V +     M L+D+VDLE   +
Sbjct:   352 VVIAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEVLRIHTKNMKLADDVDLEALAA 411

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVI-LPKD 148
                    A+IA++C EA M  +R+   +I L +D
Sbjct:   412 ETHGYVGADIASLCSEAAMQQIREKMDLIDLDED 445

 Score = 237 (88.5 bits), Expect = 8.7e-19, P = 8.7e-19
 Identities = 55/142 (38%), Positives = 83/142 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +RD+F  A+  AP ++F+DE+D+IA AR  +   A     R++ +LL +MDG +   NV 
Sbjct:   569 IRDIFDKARAAAPTVVFLDELDSIAKARGGSLGDAGGASDRVVNQLLTEMDGMNAKKNVF 628

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD---EVDLE-DYVSRP 117
             VI ATNR D +DPA+LRPGRLD+ I  PLPD   +  +    L     E  LE   +++ 
Sbjct:   629 VIGATNRPDQIDPAILRPGRLDQLIYVPLPDENARLSILNAQLRKTPLEPGLELTAIAKA 688

Query:   118 DK-ISAAEIAAICQEAGMHAVR 138
              +  S A++  I Q A  +A++
Sbjct:   689 TQGFSGADLLYIVQRAAKYAIK 710


>WB|WBGene00004978 [details] [associations]
            symbol:spg-7 species:6239 "Caenorhabditis elegans"
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0016020 "membrane" evidence=IEA] [GO:0030163 "protein catabolic
            process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0008340 "determination of adult lifespan" evidence=IMP]
            [GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
            [GO:0030968 "endoplasmic reticulum unfolded protein response"
            evidence=IMP] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
            GO:GO:0008340 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
            GO:GO:0040010 GO:GO:0002119 GO:GO:0008270 GO:GO:0006508
            GO:GO:0000003 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
            GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277 KO:K08956
            GO:GO:0017111 TIGRFAMs:TIGR01241 OMA:LYRFVTT GO:GO:0030968
            EMBL:FO081580 HSSP:Q9LCZ4 RefSeq:NP_491165.2
            ProteinModelPortal:Q9N3T5 SMR:Q9N3T5 STRING:Q9N3T5 MEROPS:M41.A10
            PaxDb:Q9N3T5 EnsemblMetazoa:Y47G6A.10 GeneID:171915
            KEGG:cel:CELE_Y47G6A.10 UCSC:Y47G6A.10 CTD:171915
            WormBase:Y47G6A.10 InParanoid:Q9N3T5 NextBio:873225 Uniprot:Q9N3T5
        Length = 782

 Score = 260 (96.6 bits), Expect = 2.7e-21, P = 2.7e-21
 Identities = 66/160 (41%), Positives = 95/160 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFD-AQTGADREVQRILMELLNQMDGF--DQTV 58
             VRD+F +A++N+P I+FIDE+DA+   R      G   E +  L +LL +MDGF  D++ 
Sbjct:   374 VRDMFSMARKNSPCILFIDEIDAVGRKRGGKGGMGGHSEQENTLNQLLVEMDGFTTDES- 432

Query:    59 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-EVDLEDYV-SR 116
             +V VI ATNR D LD ALLRPGR DR+I  P+PD + +  +F+++L      L+  V SR
Sbjct:   433 SVIVIAATNRVDILDSALLRPGRFDRQIYVPVPDIKGRASIFRVHLGPLRTSLDKTVLSR 492

Query:   117 P-----DKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
                      S A+I+ +C EA + A R   + I  K FE+
Sbjct:   493 KLAAHTPGFSGADISNVCNEAALIAARDANHEISNKHFEQ 532


>WB|WBGene00008053 [details] [associations]
            symbol:cdc-48.2 species:6239 "Caenorhabditis elegans"
            [GO:0016887 "ATPase activity" evidence=IEA;IDA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
            "DNA recombination" evidence=IEA] [GO:0009378 "four-way junction
            helicase activity" evidence=IEA] [GO:0009792 "embryo development
            ending in birth or egg hatching" evidence=IGI;IMP] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0040011
            "locomotion" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0051301 "cell division"
            evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0007126
            "meiosis" evidence=IMP] [GO:0030968 "endoplasmic reticulum unfolded
            protein response" evidence=IMP] [GO:0071712 "ER-associated
            misfolded protein catabolic process" evidence=IGI] [GO:0034098
            "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IPI] [GO:0005634
            "nucleus" evidence=IDA] [GO:0006200 "ATP catabolic process"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
            GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0040010
            GO:GO:0002119 GO:GO:0040011 EMBL:Z48334 GO:GO:0016887 GO:GO:0000910
            eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 HOGENOM:HOG000223224
            KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
            GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z48045 PIR:T19879
            RefSeq:NP_495705.1 ProteinModelPortal:P54812 SMR:P54812
            DIP:DIP-26566N IntAct:P54812 MINT:MINT-1090535 STRING:P54812
            PaxDb:P54812 PRIDE:P54812 EnsemblMetazoa:C41C4.8.1
            EnsemblMetazoa:C41C4.8.2 EnsemblMetazoa:C41C4.8.3 GeneID:174309
            KEGG:cel:CELE_C41C4.8 UCSC:C41C4.8.1 CTD:174309 WormBase:C41C4.8
            InParanoid:P54812 OMA:ADRQDWE NextBio:883464 Uniprot:P54812
        Length = 810

 Score = 260 (96.6 bits), Expect = 2.8e-21, P = 2.8e-21
 Identities = 58/144 (40%), Positives = 85/144 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRDVF  A+  AP ++F DE+D+IA AR  +   A     R++ ++L +MDG +   NV 
Sbjct:   564 VRDVFDKARAAAPCVLFFDELDSIAKARGGSVGDAGGAADRVINQVLTEMDGMNAKKNVF 623

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D +DPA+LRPGRLD+ I  PLPD   +  +F+ +L     S ++DL      
Sbjct:   624 IIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKN 683

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
                 S A++  ICQ A   A+R++
Sbjct:   684 TVGFSGADLTEICQRACKLAIRES 707

 Score = 228 (85.3 bits), Expect = 7.6e-18, P = 7.6e-18
 Identities = 54/148 (36%), Positives = 85/148 (57%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F   ++N+PAI+FIDE+DAIA  R  A    ++   RI+ +LL  MDG     +V 
Sbjct:   291 LRKAFAECEKNSPAILFIDEIDAIAPKREKAHGEVEK---RIVSQLLTLMDGLKTRAHVV 347

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             VI ATNR +++D AL R GR DR+I+  +PD   +  + +     M L ++VDLE   + 
Sbjct:   348 VIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLGEDVDLEQVANE 407

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                   A++A++C EA +  +R+   +I
Sbjct:   408 CHGFVGADLASLCSEAAIQQIREKMELI 435


>UNIPROTKB|P54812 [details] [associations]
            symbol:cdc-48.2 "Transitional endoplasmic reticulum ATPase
            homolog 2" species:6239 "Caenorhabditis elegans" [GO:0042802
            "identical protein binding" evidence=IPI] [GO:0005515 "protein
            binding" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
            GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0040010
            GO:GO:0002119 GO:GO:0040011 EMBL:Z48334 GO:GO:0016887 GO:GO:0000910
            eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 HOGENOM:HOG000223224
            KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
            GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z48045 PIR:T19879
            RefSeq:NP_495705.1 ProteinModelPortal:P54812 SMR:P54812
            DIP:DIP-26566N IntAct:P54812 MINT:MINT-1090535 STRING:P54812
            PaxDb:P54812 PRIDE:P54812 EnsemblMetazoa:C41C4.8.1
            EnsemblMetazoa:C41C4.8.2 EnsemblMetazoa:C41C4.8.3 GeneID:174309
            KEGG:cel:CELE_C41C4.8 UCSC:C41C4.8.1 CTD:174309 WormBase:C41C4.8
            InParanoid:P54812 OMA:ADRQDWE NextBio:883464 Uniprot:P54812
        Length = 810

 Score = 260 (96.6 bits), Expect = 2.8e-21, P = 2.8e-21
 Identities = 58/144 (40%), Positives = 85/144 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRDVF  A+  AP ++F DE+D+IA AR  +   A     R++ ++L +MDG +   NV 
Sbjct:   564 VRDVFDKARAAAPCVLFFDELDSIAKARGGSVGDAGGAADRVINQVLTEMDGMNAKKNVF 623

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D +DPA+LRPGRLD+ I  PLPD   +  +F+ +L     S ++DL      
Sbjct:   624 IIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKN 683

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
                 S A++  ICQ A   A+R++
Sbjct:   684 TVGFSGADLTEICQRACKLAIRES 707

 Score = 228 (85.3 bits), Expect = 7.6e-18, P = 7.6e-18
 Identities = 54/148 (36%), Positives = 85/148 (57%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F   ++N+PAI+FIDE+DAIA  R  A    ++   RI+ +LL  MDG     +V 
Sbjct:   291 LRKAFAECEKNSPAILFIDEIDAIAPKREKAHGEVEK---RIVSQLLTLMDGLKTRAHVV 347

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             VI ATNR +++D AL R GR DR+I+  +PD   +  + +     M L ++VDLE   + 
Sbjct:   348 VIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLGEDVDLEQVANE 407

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI 144
                   A++A++C EA +  +R+   +I
Sbjct:   408 CHGFVGADLASLCSEAAIQQIREKMELI 435


>UNIPROTKB|E1BTS8 [details] [associations]
            symbol:LOC426240 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            GeneTree:ENSGT00700000104534 EMBL:AADN02060646 EMBL:AADN02060647
            EMBL:AADN02060648 EMBL:AADN02060649 EMBL:AADN02060650
            EMBL:AADN02060651 EMBL:AADN02060652 EMBL:AADN02060653
            IPI:IPI00823321 Ensembl:ENSGALT00000039430 ArrayExpress:E1BTS8
            Uniprot:E1BTS8
        Length = 804

 Score = 259 (96.2 bits), Expect = 3.6e-21, P = 3.6e-21
 Identities = 55/144 (38%), Positives = 85/144 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++F  A++ AP ++F DE+D+IA AR            R++ ++L +MDG     NV 
Sbjct:   557 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 616

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             +I ATNR D +DPA+LRPGRLD+ I  PLPD + +  + + NL     + +VDL+     
Sbjct:   617 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLDFLAKM 676

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
              +  S A++  ICQ A   A+R++
Sbjct:   677 TNGFSGADLTEICQRACKLAIRES 700

 Score = 199 (75.1 bits), Expect = 9.7e-15, P = 9.7e-15
 Identities = 46/117 (39%), Positives = 70/117 (59%)

Query:    33 QTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92
             QT  + E +RI+ +LL  MDG  Q  +V V+ ATNR +++DPAL R GR DR+++  +PD
Sbjct:   313 QTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 371

Query:    93 RRQKRLVFQ-----MNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVI 144
                +  + Q     M L+D+VDLE   +       A++AA+C EA + A+RK   +I
Sbjct:   372 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 428


>FB|FBgn0024992 [details] [associations]
            symbol:CG2658 species:7227 "Drosophila melanogaster"
            [GO:0006508 "proteolysis" evidence=ISS] [GO:0005739 "mitochondrion"
            evidence=ISS] [GO:0008237 "metallopeptidase activity" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
            "metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
            GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
            eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 HSSP:Q9LCZ4
            HOGENOM:HOG000226301 MEROPS:M41.A12 EMBL:AL023874
            ProteinModelPortal:O76867 SMR:O76867 PaxDb:O76867 PRIDE:O76867
            FlyBase:FBgn0024992 InParanoid:O76867 OrthoDB:EOG4V6WXK
            ArrayExpress:O76867 Bgee:O76867 Uniprot:O76867
        Length = 819

 Score = 259 (96.2 bits), Expect = 3.7e-21, P = 3.7e-21
 Identities = 63/160 (39%), Positives = 93/160 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQT---GADREVQRILMELLNQMDGFDQTV 58
             VRD+F+  K+ AP II+IDE+DAI   R   ++   G+  E ++ L +LL +MDG     
Sbjct:   422 VRDLFKEGKKRAPCIIYIDEIDAIGRQRSGTESMGQGSSGESEQTLNQLLVEMDGMATKE 481

Query:    59 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSDEVDLED----YV 114
              V ++ +TNRAD LD ALLRPGR DR I   LP   +++ +F+ +LS  V LE     + 
Sbjct:   482 GVLMLASTNRADILDKALLRPGRFDRHILIDLPTLAERKEIFEKHLSS-VKLESPPTTFS 540

Query:   115 SRPDKI----SAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
              R  ++    S A+IA +C EA +HA R  +  +  K+ E
Sbjct:   541 QRLARLTPGFSGADIANVCNEAALHAARNTQMEVSSKNLE 580


>MGI|MGI:1928277 [details] [associations]
            symbol:Afg3l1 "AFG3(ATPase family gene 3)-like 1 (yeast)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
            evidence=ISA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0006508 "proteolysis"
            evidence=IEA] [GO:0007005 "mitochondrion organization"
            evidence=IGI] [GO:0008053 "mitochondrial fusion" evidence=IGI]
            [GO:0008152 "metabolic process" evidence=ISA] [GO:0008233
            "peptidase activity" evidence=IEA] [GO:0008237 "metallopeptidase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
            "integral to membrane" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0034982 "mitochondrial protein processing"
            evidence=IGI] [GO:0042407 "cristae formation" evidence=IGI]
            [GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1928277
            GO:GO:0016021 GO:GO:0005739 GO:GO:0005524 GO:GO:0031966
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0030163 EMBL:AK012394 EMBL:AK159647 EMBL:AK167964
            EMBL:AK168244 EMBL:BC056978 EMBL:AF329695 IPI:IPI00468514
            IPI:IPI00652659 RefSeq:NP_473411.2 UniGene:Mm.287475
            ProteinModelPortal:Q920A7 SMR:Q920A7 IntAct:Q920A7 STRING:Q920A7
            MEROPS:M41.016 PhosphoSite:Q920A7 PaxDb:Q920A7 PRIDE:Q920A7
            Ensembl:ENSMUST00000001520 Ensembl:ENSMUST00000098320 GeneID:114896
            KEGG:mmu:114896 UCSC:uc009nwd.2 CTD:114896 eggNOG:COG0465
            GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
            HOVERGEN:HBG050184 InParanoid:Q920A7 KO:K08956 OMA:WDEKDFR
            OrthoDB:EOG4SBDXC NextBio:368917 Bgee:Q920A7 CleanEx:MM_AFG3L1
            Genevestigator:Q920A7 GermOnline:ENSMUSG00000031967 GO:GO:0017111
            GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
            Uniprot:Q920A7
        Length = 789

 Score = 258 (95.9 bits), Expect = 4.4e-21, P = 4.4e-21
 Identities = 60/159 (37%), Positives = 93/159 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F +A+++AP I+FIDE+DAI   R     G   E +  L ++L +MDGF+ + NV 
Sbjct:   381 VRDMFAMARKHAPCILFIDEIDAIGRKRGRGHLGGQSEQENTLNQMLVEMDGFNSSTNVV 440

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-EVD---LEDYVSRP 117
             V+  TNR D LDPAL RPGR DR+I    PD + +  +F+++L   ++D    +D +SR 
Sbjct:   441 VLAGTNRPDILDPALTRPGRFDRQIYIGPPDIKGRSSIFKVHLRPLKLDGSLSKDALSRK 500

Query:   118 -----DKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151
                     + A+I+ +C EA + A R     +  + FE+
Sbjct:   501 LAALTPGFTGADISNVCNEAALIAARHLSPSVQERHFEQ 539


>DICTYBASE|DDB_G0282241 [details] [associations]
            symbol:DDB_G0282241 species:44689 "Dictyostelium
            discoideum" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 dictyBase:DDB_G0282241 GO:GO:0005524 eggNOG:COG0464
            GO:GO:0017111 EMBL:AAFI02000046 RefSeq:XP_640304.1
            ProteinModelPortal:Q54ST1 EnsemblProtists:DDB0205288 GeneID:8623480
            KEGG:ddi:DDB_G0282241 InParanoid:Q54ST1 OMA:IEMISID Uniprot:Q54ST1
        Length = 825

 Score = 258 (95.9 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 54/145 (37%), Positives = 87/145 (60%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATAR-FDAQTGADREVQRILMELLNQMDGFDQTVNV 60
             +RD+F+ A++  P+I+F DE+DAI + R     +  D    R+L   LN+MDG +Q   V
Sbjct:   652 IRDIFKKARQTTPSILFFDEIDAIVSKRNLSDNSSGDNAQSRVLSTFLNEMDGVEQLNGV 711

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVS 115
              VI ATNR D +D ALLRPGR D+ +E  LPD+  +  + ++      LSD V+L +  +
Sbjct:   712 IVIGATNRLDMIDNALLRPGRFDKILEIKLPDQLSRLKILKIKTKSIPLSDNVNLIEISN 771

Query:   116 RPDKISAAEIAAICQEAGMHAVRKN 140
               +  S A++  +C+EA   ++R++
Sbjct:   772 LTNGFSGADLENLCREASFQSLRRD 796

 Score = 179 (68.1 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 52/171 (30%), Positives = 94/171 (54%)

Query:     8 LAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-QTVNVKVIMAT 66
             +AK N+P ++FIDE+D I   R    + + +   R++ + L  +DG   +  N+ +I AT
Sbjct:   381 IAKSNSPIVVFIDEIDTICPPR----SKSTQNESRVVGQFLTLLDGIGARKGNLIIIAAT 436

Query:    67 NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSDEVDLEDYVSRP-DKIS---- 121
             NR + +D AL RPGRLDR+IE P+P+++Q+  + ++  S ++ +    S   D+I+    
Sbjct:   437 NRPNQIDNALRRPGRLDREIEIPVPNKQQRLDILKLYCS-KLPISPTPSNLLDQIADETV 495

Query:   122 ---AAEIAAICQEAGMHAVRKNRYVILP-KDFEKGYRTNVKKPDTDFEFYK 168
                 A I  +C+++   A  K  Y +L  ++ E+    N KK   + E ++
Sbjct:   496 GYVGANIQFLCRDSAFIAFSK--YNLLKYQNNEQNENENEKKYLIEIEDFR 544


>UNIPROTKB|Q9KU86 [details] [associations]
            symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0000910 "cytokinesis" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
            GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270
            GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
            GO:GO:0000910 GO:GO:0030163 TIGRFAMs:TIGR01241 HSSP:P28691
            KO:K03798 MEROPS:M41.001 OMA:TGKADDE PIR:E82299 RefSeq:NP_230286.1
            ProteinModelPortal:Q9KU86 SMR:Q9KU86 DNASU:2615425 GeneID:2615425
            KEGG:vch:VC0637 PATRIC:20080383 ProtClustDB:CLSK874054
            Uniprot:Q9KU86
        Length = 651

 Score = 256 (95.2 bits), Expect = 5.0e-21, P = 5.0e-21
 Identities = 59/154 (38%), Positives = 89/154 (57%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F  AK+ +P IIFIDE+DA+   R     G   E ++ L ++L +MDGF+    + 
Sbjct:   237 VRDMFEQAKKASPCIIFIDEIDAVGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGII 296

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSR 116
             VI ATNR D LDPALLRPGR DR++   LPD R +  + +++     L+++V+       
Sbjct:   297 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRKVPLANDVEPSLIARG 356

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
                 S A++A +  EA + A R N+  +   +FE
Sbjct:   357 TPGFSGADLANLVNEAALFAARGNKRNVSMVEFE 390


>TIGR_CMR|VC_0637 [details] [associations]
            symbol:VC_0637 "cell division protein FtsH" species:686
            "Vibrio cholerae O1 biovar El Tor" [GO:0000910 "cytokinesis"
            evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR
            GO:GO:0008270 GO:GO:0006200 GO:GO:0006508 GO:GO:0004222
            GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 TIGRFAMs:TIGR01241
            HSSP:P28691 KO:K03798 MEROPS:M41.001 OMA:TGKADDE PIR:E82299
            RefSeq:NP_230286.1 ProteinModelPortal:Q9KU86 SMR:Q9KU86
            DNASU:2615425 GeneID:2615425 KEGG:vch:VC0637 PATRIC:20080383
            ProtClustDB:CLSK874054 Uniprot:Q9KU86
        Length = 651

 Score = 256 (95.2 bits), Expect = 5.0e-21, P = 5.0e-21
 Identities = 59/154 (38%), Positives = 89/154 (57%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F  AK+ +P IIFIDE+DA+   R     G   E ++ L ++L +MDGF+    + 
Sbjct:   237 VRDMFEQAKKASPCIIFIDEIDAVGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGII 296

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSR 116
             VI ATNR D LDPALLRPGR DR++   LPD R +  + +++     L+++V+       
Sbjct:   297 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRKVPLANDVEPSLIARG 356

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
                 S A++A +  EA + A R N+  +   +FE
Sbjct:   357 TPGFSGADLANLVNEAALFAARGNKRNVSMVEFE 390


>MGI|MGI:2385906 [details] [associations]
            symbol:Spg7 "spastic paraplegia 7 homolog (human)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0006508 "proteolysis"
            evidence=IEA] [GO:0007005 "mitochondrion organization"
            evidence=IMP] [GO:0007155 "cell adhesion" evidence=TAS] [GO:0008089
            "anterograde axon cargo transport" evidence=IMP] [GO:0008233
            "peptidase activity" evidence=IEA] [GO:0008237 "metallopeptidase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
            "integral to membrane" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030155 "regulation of cell adhesion"
            evidence=TAS] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            SMART:SM00382 MGI:MGI:2385906 GO:GO:0016021 GO:GO:0005739
            GO:GO:0005524 GO:GO:0030155 GO:GO:0031966 GO:GO:0046872
            GO:GO:0008270 GO:GO:0006508 GO:GO:0007155 GO:GO:0004222
            GO:GO:0008089 GO:GO:0030163 eggNOG:COG0465
            GeneTree:ENSGT00530000063070 HOVERGEN:HBG050184 GO:GO:0017111
            TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0007005 MEROPS:M41.006
            CTD:6687 KO:K09552 ChiTaRS:SPG7 EMBL:AF512565 EMBL:AF547215
            EMBL:AK145540 EMBL:BC024466 EMBL:BC024986 EMBL:BC051051
            EMBL:BC096690 IPI:IPI00170128 RefSeq:NP_694816.3 UniGene:Mm.292075
            ProteinModelPortal:Q3ULF4 SMR:Q3ULF4 STRING:Q3ULF4
            PhosphoSite:Q3ULF4 PaxDb:Q3ULF4 PRIDE:Q3ULF4
            Ensembl:ENSMUST00000108868 GeneID:234847 KEGG:mmu:234847
            UCSC:uc009nud.1 InParanoid:Q3ULF4 NextBio:382391 Bgee:Q3ULF4
            CleanEx:MM_SPG7 Genevestigator:Q3ULF4 Uniprot:Q3ULF4
        Length = 781

 Score = 257 (95.5 bits), Expect = 5.6e-21, P = 5.6e-21
 Identities = 61/158 (38%), Positives = 95/158 (60%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTG-ADREVQRILMELLNQMDGFDQTVNV 60
             VR +F+ A+  AP I++IDE+DA+   R  + +G ++ E ++ L +LL +MDG   T +V
Sbjct:   390 VRSLFKEARARAPCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTLNQLLVEMDGMGTTDHV 449

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSDEVDLED----YVSR 116
              V+ +TNRAD LD AL+RPGRLDR +   LP  +++R +F+ +L   + L      Y  R
Sbjct:   450 IVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKG-LKLTQPSSFYSQR 508

Query:   117 PDKI----SAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
               ++    S A+IA IC EA +HA R+    +   +FE
Sbjct:   509 LAELTPGFSGADIANICNEAALHAAREGHTSVHTFNFE 546


>UNIPROTKB|Q9UQ90 [details] [associations]
            symbol:SPG7 "Paraplegin" species:9606 "Homo sapiens"
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008219
            "cell death" evidence=IEA] [GO:0016021 "integral to membrane"
            evidence=IEA] [GO:0007005 "mitochondrion organization"
            evidence=IEA] [GO:0008089 "anterograde axon cargo transport"
            evidence=IEA] [GO:0031966 "mitochondrial membrane" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0004222
            "metalloendopeptidase activity" evidence=IDA] [GO:0005739
            "mitochondrion" evidence=TAS] [GO:0051082 "unfolded protein
            binding" evidence=TAS] [GO:0007399 "nervous system development"
            evidence=TAS] [GO:0008233 "peptidase activity" evidence=TAS]
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 SMART:SM00382 GO:GO:0016021 GO:GO:0005739
            GO:GO:0005524 GO:GO:0007399 GO:GO:0031966 GO:GO:0046872
            GO:GO:0008219 GO:GO:0051082 GO:GO:0008270 GO:GO:0006508
            GO:GO:0004222 GO:GO:0008089 GO:GO:0030163 eggNOG:COG0465
            HOGENOM:HOG000217277 HOVERGEN:HBG050184 GO:GO:0017111
            TIGRFAMs:TIGR01241 GO:GO:0007005 EMBL:Y16610 EMBL:AF080525
            EMBL:AF080511 EMBL:AF080512 EMBL:AF080513 EMBL:AF080514
            EMBL:AF080515 EMBL:AF080516 EMBL:AF080517 EMBL:AF080518
            EMBL:AF080519 EMBL:AF080520 EMBL:AF080521 EMBL:AF080522
            EMBL:AF080523 EMBL:AF080524 EMBL:BC007692 EMBL:BC035929
            EMBL:BC036104 EMBL:BC110530 EMBL:BC110531 IPI:IPI00299010
            IPI:IPI00398508 RefSeq:NP_003110.1 RefSeq:NP_955399.1
            UniGene:Hs.185597 PDB:2QZ4 PDBsum:2QZ4 ProteinModelPortal:Q9UQ90
            SMR:Q9UQ90 IntAct:Q9UQ90 STRING:Q9UQ90 MEROPS:M41.006
            PhosphoSite:Q9UQ90 DMDM:116242796 PaxDb:Q9UQ90 PRIDE:Q9UQ90
            DNASU:6687 Ensembl:ENST00000268704 Ensembl:ENST00000341316
            GeneID:6687 KEGG:hsa:6687 UCSC:uc002fni.3 UCSC:uc002fnj.3 CTD:6687
            GeneCards:GC16P089574 HGNC:HGNC:11237 MIM:602783 MIM:607259
            neXtProt:NX_Q9UQ90 Orphanet:99013 PharmGKB:PA36067
            InParanoid:Q9UQ90 KO:K09552 OMA:MMDHEAK OrthoDB:EOG4PG60F
            PhylomeDB:Q9UQ90 ChiTaRS:SPG7 EvolutionaryTrace:Q9UQ90
            GenomeRNAi:6687 NextBio:26057 ArrayExpress:Q9UQ90 Bgee:Q9UQ90
            CleanEx:HS_SPG7 Genevestigator:Q9UQ90 GermOnline:ENSG00000197912
            Uniprot:Q9UQ90
        Length = 795

 Score = 257 (95.5 bits), Expect = 5.8e-21, P = 5.8e-21
 Identities = 60/157 (38%), Positives = 93/157 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTG-ADREVQRILMELLNQMDGFDQTVNV 60
             VR +F+ A+  AP I++IDE+DA+   R    +G ++ E ++ L +LL +MDG   T +V
Sbjct:   390 VRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHV 449

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSDEVDLED---YVSRP 117
              V+ +TNRAD LD AL+RPGRLDR +   LP  +++R +F+ +L      +    Y  R 
Sbjct:   450 IVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRL 509

Query:   118 DKI----SAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
              ++    S A+IA IC EA +HA R+    +   +FE
Sbjct:   510 AELTPGFSGADIANICNEAALHAAREGHTSVHTLNFE 546


>UNIPROTKB|G4N517 [details] [associations]
            symbol:MGG_05193 "Cell division control protein 48"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
            GO:GO:0051301 EMBL:CM001233 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            GO:GO:0043581 KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18
            Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            RefSeq:XP_003712735.1 ProteinModelPortal:G4N517 SMR:G4N517
            EnsemblFungi:MGG_05193T0 GeneID:2675720 KEGG:mgr:MGG_05193
            Uniprot:G4N517
        Length = 820

 Score = 257 (95.5 bits), Expect = 6.1e-21, P = 6.1e-21
 Identities = 60/153 (39%), Positives = 92/153 (60%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F  A++N+PAIIFIDE+D+IA  R   +T  + E +R++ +LL  MDG     NV 
Sbjct:   304 LRKAFEEAEKNSPAIIFIDEIDSIAPKR--EKTNGEVE-RRVVSQLLTLMDGMKARSNVV 360

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             V+ ATNR +++DPAL R GR DR+++  +PD   +  + Q     M L D+VDLE   + 
Sbjct:   361 VMAATNRPNSIDPALRRFGRFDREVDIGIPDPTGRLEILQIHTKNMKLGDDVDLEQIAAE 420

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI-LPKD 148
                   +++AA+C EA M  +R+   +I L +D
Sbjct:   421 THGYVGSDVAALCSEAAMQQIREKMDLIDLDED 453

 Score = 249 (92.7 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 58/144 (40%), Positives = 84/144 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +RD+F  A+  AP I+F+DE+D+IA AR  +   A     R++ +LL +MDG     NV 
Sbjct:   578 IRDIFDKARAAAPCIVFLDELDSIAKARGGSVGDAGGASDRVVNQLLTEMDGMTSKKNVF 637

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             VI ATNR + LDPAL RPGRLD  I  PLPD   +  + +  L     SD+VDL+   ++
Sbjct:   638 VIGATNRPEQLDPALCRPGRLDSLIYVPLPDELGRLSILKAQLRKTPVSDDVDLQYIANK 697

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
                 S A++  I Q A   A++++
Sbjct:   698 THGFSGADLGFITQRAVKIAIKES 721


>CGD|CAL0000732 [details] [associations]
            symbol:CDC48 species:5476 "Candida albicans" [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0043332 "mating projection tip"
            evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
            [GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0036266 "Cdc48p-Npl4p-Vms1p
            AAA ATPase complex" evidence=IEA] [GO:0000837 "Doa10p ubiquitin
            ligase complex" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
            cytosol" evidence=IEA] [GO:0031134 "sister chromatid biorientation"
            evidence=IEA] [GO:0033047 "regulation of mitotic sister chromatid
            segregation" evidence=IEA] [GO:0071629 "cytoplasm-associated
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:1900182 "positive regulation of protein
            localization to nucleus" evidence=IEA] [GO:0071712 "ER-associated
            misfolded protein catabolic process" evidence=IEA] [GO:0071630
            "nucleus-associated proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0051228 "mitotic spindle
            disassembly" evidence=IEA] [GO:0016320 "endoplasmic reticulum
            membrane fusion" evidence=IEA] [GO:0034727 "piecemeal
            microautophagy of nucleus" evidence=IEA] [GO:0072671
            "mitochondria-associated protein catabolic process" evidence=IEA]
            [GO:0034517 "ribophagy" evidence=IEA] [GO:0061166 "establishment of
            endoplasmic reticulum localization involved in endoplasmic
            reticulum polarization at cell division site" evidence=IEA]
            [GO:0016236 "macroautophagy" evidence=IEA] [GO:0009986 "cell
            surface" evidence=IDA] [GO:0043130 "ubiquitin binding"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 CGD:CAL0000732 Pfam:PF02359 GO:GO:0005886
            GO:GO:0005524 GO:GO:0009986 eggNOG:COG0464 GO:GO:0017111
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 EMBL:AACQ01000114 EMBL:AACQ01000113
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 RefSeq:XP_713945.1 RefSeq:XP_714003.1
            ProteinModelPortal:Q59WG3 SMR:Q59WG3 STRING:Q59WG3 GeneID:3644394
            GeneID:3644440 KEGG:cal:CaO19.2340 KEGG:cal:CaO19.9876
            Uniprot:Q59WG3
        Length = 826

 Score = 257 (95.5 bits), Expect = 6.2e-21, P = 6.2e-21
 Identities = 61/149 (40%), Positives = 90/149 (60%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQR-ILMELLNQMDGFDQTVNV 60
             +R  F  A++N+P+IIFIDE+D+IA  R D   G   EV+R ++ +LL  MDG     NV
Sbjct:   297 LRKAFEEAEKNSPSIIFIDEIDSIAPKR-DKTNG---EVERRVVSQLLTLMDGMKARSNV 352

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
              VI ATNR +++DPAL R GR DR+++  +PD   +  + +     M L+D+VDLE   S
Sbjct:   353 VVIAATNRPNSIDPALRRFGRFDREVDIGVPDAEGRLEILRIHTKNMKLADDVDLEAIAS 412

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVI 144
                    A+IA++C EA M  +R+   +I
Sbjct:   413 ETHGFVGADIASLCSEAAMQQIREKMDLI 441

 Score = 253 (94.1 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 60/169 (35%), Positives = 92/169 (54%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +RD+F  A+  AP ++F+DE+D+IA AR  +   A     R++ +LL +MDG +   NV 
Sbjct:   570 IRDIFDKARAAAPTVVFLDELDSIAKARGGSHGDAGGASDRVVNQLLTEMDGMNAKKNVF 629

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSDE-----VDLEDYVSR 116
             VI ATNR D +DPALLRPGRLD+ I  PLPD   +  + Q  L +      +DL +    
Sbjct:   630 VIGATNRPDQIDPALLRPGRLDQLIYVPLPDEPARLSILQAQLRNTPLEPGLDLNEIAKI 689

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFE 165
                 S A+++ I Q +   A++ +    +  +  K  +  VK  D D +
Sbjct:   690 THGFSGADLSYIVQRSAKFAIKDSIEAQVKINKIKEEKEKVKTEDVDMK 738


>UNIPROTKB|Q59WG3 [details] [associations]
            symbol:CDC48 "Putative uncharacterized protein CDC48"
            species:237561 "Candida albicans SC5314" [GO:0005886 "plasma
            membrane" evidence=IDA] [GO:0009986 "cell surface" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 CGD:CAL0000732 Pfam:PF02359 GO:GO:0005886
            GO:GO:0005524 GO:GO:0009986 eggNOG:COG0464 GO:GO:0017111
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 EMBL:AACQ01000114 EMBL:AACQ01000113
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 RefSeq:XP_713945.1 RefSeq:XP_714003.1
            ProteinModelPortal:Q59WG3 SMR:Q59WG3 STRING:Q59WG3 GeneID:3644394
            GeneID:3644440 KEGG:cal:CaO19.2340 KEGG:cal:CaO19.9876
            Uniprot:Q59WG3
        Length = 826

 Score = 257 (95.5 bits), Expect = 6.2e-21, P = 6.2e-21
 Identities = 61/149 (40%), Positives = 90/149 (60%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQR-ILMELLNQMDGFDQTVNV 60
             +R  F  A++N+P+IIFIDE+D+IA  R D   G   EV+R ++ +LL  MDG     NV
Sbjct:   297 LRKAFEEAEKNSPSIIFIDEIDSIAPKR-DKTNG---EVERRVVSQLLTLMDGMKARSNV 352

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVS 115
              VI ATNR +++DPAL R GR DR+++  +PD   +  + +     M L+D+VDLE   S
Sbjct:   353 VVIAATNRPNSIDPALRRFGRFDREVDIGVPDAEGRLEILRIHTKNMKLADDVDLEAIAS 412

Query:   116 RPDKISAAEIAAICQEAGMHAVRKNRYVI 144
                    A+IA++C EA M  +R+   +I
Sbjct:   413 ETHGFVGADIASLCSEAAMQQIREKMDLI 441

 Score = 253 (94.1 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 60/169 (35%), Positives = 92/169 (54%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +RD+F  A+  AP ++F+DE+D+IA AR  +   A     R++ +LL +MDG +   NV 
Sbjct:   570 IRDIFDKARAAAPTVVFLDELDSIAKARGGSHGDAGGASDRVVNQLLTEMDGMNAKKNVF 629

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSDE-----VDLEDYVSR 116
             VI ATNR D +DPALLRPGRLD+ I  PLPD   +  + Q  L +      +DL +    
Sbjct:   630 VIGATNRPDQIDPALLRPGRLDQLIYVPLPDEPARLSILQAQLRNTPLEPGLDLNEIAKI 689

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFE 165
                 S A+++ I Q +   A++ +    +  +  K  +  VK  D D +
Sbjct:   690 THGFSGADLSYIVQRSAKFAIKDSIEAQVKINKIKEEKEKVKTEDVDMK 738


>DICTYBASE|DDB_G0272120 [details] [associations]
            symbol:rcaA "peptidase M41, FtsH domain-containing
            protein" species:44689 "Dictyostelium discoideum" [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
            "membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
            "metalloendopeptidase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
            PROSITE:PS00674 SMART:SM00382 dictyBase:DDB_G0272120 GO:GO:0005524
            GO:GO:0016020 GO:GO:0006508 GenomeReviews:CM000151_GR GO:GO:0004222
            EMBL:AAFI02000008 GO:GO:0030163 KO:K08956 GO:GO:0017111
            TIGRFAMs:TIGR01241 ProtClustDB:CLSZ2846729 RefSeq:XP_645267.1
            ProteinModelPortal:Q75JS8 SMR:Q75JS8 STRING:Q75JS8
            EnsemblProtists:DDB0185211 GeneID:8618433 KEGG:ddi:DDB_G0272120
            InParanoid:Q75JS8 OMA:ERTIVAH Uniprot:Q75JS8
        Length = 844

 Score = 257 (95.5 bits), Expect = 6.4e-21, P = 6.4e-21
 Identities = 60/146 (41%), Positives = 88/146 (60%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F+ A+ N P I+FIDE+DA+  AR       D E +  L +LL +MDGF  T  V 
Sbjct:   435 VRDLFKEARANTPCIVFIDEIDAVGRARSRGGFHND-ERENTLNQLLVEMDGFSSTSGVV 493

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-EVD--LEDYVSRPD 118
             V   TNR+D LDPALLRPGR DR+I    PD + ++ +F ++L + ++D  +E+   +  
Sbjct:   494 VFAGTNRSDVLDPALLRPGRFDRQIYVGKPDIKGRKDIFMVHLKNIKLDGEMEEIAKKLA 553

Query:   119 KI----SAAEIAAICQEAGMHAVRKN 140
              +    S A+IA +C E  + A RK+
Sbjct:   554 TLTPGFSGADIANVCNEGALVAARKD 579


>GENEDB_PFALCIPARUM|PFL1925w [details] [associations]
            symbol:PFL1925w "cell division protein FtsH,
            putative" species:5833 "Plasmodium falciparum" [GO:0004176
            "ATP-dependent peptidase activity" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
            PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0051301
            GO:GO:0016020 GO:GO:0006508 GO:GO:0004222 EMBL:AE014188
            GO:GO:0030163 TIGRFAMs:TIGR01241 GO:GO:0004176 HOGENOM:HOG000217276
            HSSP:Q9LCZ4 KO:K01417 RefSeq:XP_001350791.1
            ProteinModelPortal:Q8I526 SMR:Q8I526 IntAct:Q8I526
            MINT:MINT-1702870 PRIDE:Q8I526 EnsemblProtists:PFL1925w:mRNA
            GeneID:811437 KEGG:pfa:PFL1925w EuPathDB:PlasmoDB:PF3D7_1239700
            ProtClustDB:CLSZ2433071 Uniprot:Q8I526
        Length = 880

 Score = 257 (95.5 bits), Expect = 6.9e-21, P = 6.9e-21
 Identities = 64/151 (42%), Positives = 91/151 (60%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQT-GA-DREVQRILMELLNQMDGFDQTVN 59
             +R +F  A+  AP+I+FIDE+DAI   R      GA  RE  + L +LL +MDGF  TV+
Sbjct:   230 IRQLFAHARSVAPSIVFIDEIDAIGGKRSSGSVNGAGQREHDQTLNQLLVEMDGFSNTVH 289

Query:    60 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPD--RRQKRL-VFQMNLSDEVDLEDY--V 114
             + VI ATNR DTLD ALLRPGR DR +  PLPD   R+K L ++   +  ++ LED   +
Sbjct:   290 IMVIGATNRIDTLDSALLRPGRFDRIVYVPLPDINGRKKILEIYIKKIKSDLKLEDIEKI 349

Query:   115 SR-PDKISAAEIAAICQEAGMHAVRKNRYVI 144
             +R     S A++  +  EA + A R N+ ++
Sbjct:   350 ARLTPGFSGADLENVVNEATILATRNNKSLV 380


>UNIPROTKB|Q8I526 [details] [associations]
            symbol:PFL1925w "Cell division protein FtsH, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0004176
            "ATP-dependent peptidase activity" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
            PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0051301
            GO:GO:0016020 GO:GO:0006508 GO:GO:0004222 EMBL:AE014188
            GO:GO:0030163 TIGRFAMs:TIGR01241 GO:GO:0004176 HOGENOM:HOG000217276
            HSSP:Q9LCZ4 KO:K01417 RefSeq:XP_001350791.1
            ProteinModelPortal:Q8I526 SMR:Q8I526 IntAct:Q8I526
            MINT:MINT-1702870 PRIDE:Q8I526 EnsemblProtists:PFL1925w:mRNA
            GeneID:811437 KEGG:pfa:PFL1925w EuPathDB:PlasmoDB:PF3D7_1239700
            ProtClustDB:CLSZ2433071 Uniprot:Q8I526
        Length = 880

 Score = 257 (95.5 bits), Expect = 6.9e-21, P = 6.9e-21
 Identities = 64/151 (42%), Positives = 91/151 (60%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQT-GA-DREVQRILMELLNQMDGFDQTVN 59
             +R +F  A+  AP+I+FIDE+DAI   R      GA  RE  + L +LL +MDGF  TV+
Sbjct:   230 IRQLFAHARSVAPSIVFIDEIDAIGGKRSSGSVNGAGQREHDQTLNQLLVEMDGFSNTVH 289

Query:    60 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPD--RRQKRL-VFQMNLSDEVDLEDY--V 114
             + VI ATNR DTLD ALLRPGR DR +  PLPD   R+K L ++   +  ++ LED   +
Sbjct:   290 IMVIGATNRIDTLDSALLRPGRFDRIVYVPLPDINGRKKILEIYIKKIKSDLKLEDIEKI 349

Query:   115 SR-PDKISAAEIAAICQEAGMHAVRKNRYVI 144
             +R     S A++  +  EA + A R N+ ++
Sbjct:   350 ARLTPGFSGADLENVVNEATILATRNNKSLV 380


>UNIPROTKB|A7E2Z6 [details] [associations]
            symbol:SPG7 "SPG7 protein" species:9913 "Bos taurus"
            [GO:0008089 "anterograde axon cargo transport" evidence=IEA]
            [GO:0007005 "mitochondrion organization" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=IEA] [GO:0004222 "metalloendopeptidase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
            "integral to membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005739
            GO:GO:0005524 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0008089 GO:GO:0030163 eggNOG:COG0465
            GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
            HOVERGEN:HBG050184 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
            MEROPS:M41.006 CTD:6687 KO:K09552 OMA:MMDHEAK OrthoDB:EOG4PG60F
            EMBL:DAAA02046269 EMBL:BC151632 IPI:IPI00866907
            RefSeq:NP_001095492.1 UniGene:Bt.11239 SMR:A7E2Z6 STRING:A7E2Z6
            Ensembl:ENSBTAT00000032500 GeneID:515269 KEGG:bta:515269
            InParanoid:A7E2Z6 NextBio:20871741 Uniprot:A7E2Z6
        Length = 779

 Score = 256 (95.2 bits), Expect = 7.1e-21, P = 7.1e-21
 Identities = 60/151 (39%), Positives = 92/151 (60%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTG-ADREVQRILMELLNQMDGFDQTVNV 60
             VR +F+ A+  AP I++IDE+DA+   R  A +G ++ E ++ L +LL +MDG   T +V
Sbjct:   390 VRSLFKEARARAPCIVYIDEIDAVGKKRSTAVSGFSNTEEEQTLNQLLVEMDGMGTTDHV 449

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-EVDLED--YVSRP 117
              V+ ATNRAD LD ALLRPGRLDR +   LP  ++++ +F+ +L   ++      Y  R 
Sbjct:   450 IVLAATNRADILDNALLRPGRLDRHVFIDLPTLQERKEIFEQHLKSLKLTRASSFYSQRL 509

Query:   118 DKI----SAAEIAAICQEAGMHAVRKNRYVI 144
              ++    S A+IA IC EA +HA R+    +
Sbjct:   510 AELTPGFSGADIANICNEAALHAAREGHTAV 540


>UNIPROTKB|E2R4F3 [details] [associations]
            symbol:SPG7 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0008089 "anterograde axon cargo transport"
            evidence=IEA] [GO:0007005 "mitochondrion organization"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0004222
            "metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006508
            "proteolysis" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
            GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0008089
            GO:GO:0030163 GeneTree:ENSGT00530000063070 GO:GO:0017111
            TIGRFAMs:TIGR01241 GO:GO:0007005 CTD:6687 KO:K09552 OMA:MMDHEAK
            EMBL:AAEX03003953 EMBL:AAEX03003954 RefSeq:XP_546777.3
            Ensembl:ENSCAFT00000031561 GeneID:489657 KEGG:cfa:489657
            NextBio:20862809 Uniprot:E2R4F3
        Length = 793

 Score = 256 (95.2 bits), Expect = 7.3e-21, P = 7.3e-21
 Identities = 62/158 (39%), Positives = 94/158 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTG-ADREVQRILMELLNQMDGFDQTVNV 60
             VR +F+ A+  AP I++IDE+DA+   R    +G ++ E ++ L +LL +MDG   T +V
Sbjct:   390 VRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHV 449

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSDEVDLED----YVSR 116
              V+ +TNRAD LD ALLRPGRLDR +   LP  +++R +F+ +L   + L      Y  R
Sbjct:   450 IVLASTNRADILDNALLRPGRLDRHVFIDLPTLQERREIFEHHLKS-LKLTQASSFYSQR 508

Query:   117 PDKI----SAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
               ++    S A+IA IC EA +HA R+    +   +FE
Sbjct:   509 LAELTPGFSGADIANICNEAALHAAREGHTSVHTFNFE 546


>TIGR_CMR|CJE_1085 [details] [associations]
            symbol:CJE_1085 "cell division protein FtsH, putative"
            species:195099 "Campylobacter jejuni RM1221" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0051301 EMBL:CP000025 GenomeReviews:CP000025_GR
            eggNOG:COG0465 GO:GO:0017111 HOGENOM:HOG000217276 KO:K01417
            RefSeq:YP_179078.1 ProteinModelPortal:Q5HUF7 SMR:Q5HUF7
            STRING:Q5HUF7 GeneID:3231594 KEGG:cjr:CJE1085 PATRIC:20043979
            OMA:HRSDERE ProtClustDB:CLSK2395802
            BioCyc:CJEJ195099:GJC0-1111-MONOMER Uniprot:Q5HUF7
        Length = 538

 Score = 250 (93.1 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 56/151 (37%), Positives = 89/151 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++F  AK  AP+I+FIDE+DA+  AR +  +  +R+    L +LL QMDGF+    V 
Sbjct:   233 VRELFSKAKMMAPSIVFIDEIDAVGKARGE-MSNVERD--STLNQLLTQMDGFEDNSGVI 289

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSDE---VDLEDYVSRPD 118
             VI ATN+ + +DPALLR GR DR+I   LPD + +  + ++ + D+   ++L        
Sbjct:   290 VIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKDKNNNINLNKIAKASV 349

Query:   119 KISAAEIAAICQEAGMHAVRKNRYVILPKDF 149
               S A +  +  EA ++A+R+N  ++   DF
Sbjct:   350 GFSGAGLETLVNEAAINALRRNSALVEESDF 380


>GENEDB_PFALCIPARUM|PF07_0047 [details] [associations]
            symbol:PF07_0047 "cell division cycle ATPase,
            putative" species:5833 "Plasmodium falciparum" [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0051726 "regulation of cell cycle"
            evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
            GO:GO:0016887 GO:GO:0007049 GO:GO:0051726 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 PANTHER:PTHR23077:SF18
            SMART:SM01073 EMBL:AL844506 EMBL:M96757 RefSeq:XP_001349023.1
            ProteinModelPortal:P46468 IntAct:P46468 MINT:MINT-1593477
            PRIDE:P46468 EnsemblProtists:PF07_0047:mRNA GeneID:2655095
            KEGG:pfa:PF07_0047 EuPathDB:PlasmoDB:PF3D7_0711000 Uniprot:P46468
        Length = 1229

 Score = 256 (95.2 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 62/172 (36%), Positives = 100/172 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F  A+  +P IIF DE+D++A  R ++ T  D    R++ ++L ++DG ++   + 
Sbjct:  1016 VRDLFDKARAASPCIIFFDEIDSLAKER-NSNTNNDAS-DRVINQILTEIDGINEKKTIF 1073

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQM---N--LSDEVDLEDYVSR 116
             +I ATNR D LD AL RPGRLD+ I   LPD + +  +F+    N  L+++VD+ D   R
Sbjct:  1074 IIAATNRPDILDKALTRPGRLDKLIYISLPDLKSRYSIFKAILKNTPLNEDVDIHDMAKR 1133

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYV--ILPKDFEKGYRTN---VKKPDTD 163
              +  S A+I  +CQ A   A+++  ++  I  K+ E+  + N    K  DTD
Sbjct:  1134 TEGFSGADITNLCQSAVNEAIKETIHLLNIRKKEQEEQRKKNKNSFKIDDTD 1185

 Score = 234 (87.4 bits), Expect = 3.2e-18, P = 3.2e-18
 Identities = 52/144 (36%), Positives = 86/144 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R +F+ A E  P IIFIDE+D+IA  R  +++  + E +R++ +LL  MDG  +  NV 
Sbjct:   609 LRKIFKKASEKTPCIIFIDEIDSIANKR--SKSNNELE-KRVVSQLLTLMDGLKKNNNVL 665

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF-----QMNLSDEVDLEDYVSR 116
             V+ ATNR +++DPAL R GR DR+IE P+PD + +  +      +M L  +V+L      
Sbjct:   666 VLAATNRPNSIDPALRRFGRFDREIEIPVPDEQGRYEILLTKTKKMKLDPDVNLRKIAKE 725

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
                   A++A +C EA +  ++++
Sbjct:   726 CHGYVGADLAQLCFEAAIQCIKEH 749


>UNIPROTKB|P46468 [details] [associations]
            symbol:PF07_0047 "Putative cell division cycle ATPase"
            species:36329 "Plasmodium falciparum 3D7" [GO:0006200 "ATP
            catabolic process" evidence=ISS] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0051726 "regulation of cell cycle" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0016887
            GO:GO:0007049 GO:GO:0051726 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 PANTHER:PTHR23077:SF18 SMART:SM01073 EMBL:AL844506
            EMBL:M96757 RefSeq:XP_001349023.1 ProteinModelPortal:P46468
            IntAct:P46468 MINT:MINT-1593477 PRIDE:P46468
            EnsemblProtists:PF07_0047:mRNA GeneID:2655095 KEGG:pfa:PF07_0047
            EuPathDB:PlasmoDB:PF3D7_0711000 Uniprot:P46468
        Length = 1229

 Score = 256 (95.2 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 62/172 (36%), Positives = 100/172 (58%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F  A+  +P IIF DE+D++A  R ++ T  D    R++ ++L ++DG ++   + 
Sbjct:  1016 VRDLFDKARAASPCIIFFDEIDSLAKER-NSNTNNDAS-DRVINQILTEIDGINEKKTIF 1073

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQM---N--LSDEVDLEDYVSR 116
             +I ATNR D LD AL RPGRLD+ I   LPD + +  +F+    N  L+++VD+ D   R
Sbjct:  1074 IIAATNRPDILDKALTRPGRLDKLIYISLPDLKSRYSIFKAILKNTPLNEDVDIHDMAKR 1133

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYV--ILPKDFEKGYRTN---VKKPDTD 163
              +  S A+I  +CQ A   A+++  ++  I  K+ E+  + N    K  DTD
Sbjct:  1134 TEGFSGADITNLCQSAVNEAIKETIHLLNIRKKEQEEQRKKNKNSFKIDDTD 1185

 Score = 234 (87.4 bits), Expect = 3.2e-18, P = 3.2e-18
 Identities = 52/144 (36%), Positives = 86/144 (59%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R +F+ A E  P IIFIDE+D+IA  R  +++  + E +R++ +LL  MDG  +  NV 
Sbjct:   609 LRKIFKKASEKTPCIIFIDEIDSIANKR--SKSNNELE-KRVVSQLLTLMDGLKKNNNVL 665

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF-----QMNLSDEVDLEDYVSR 116
             V+ ATNR +++DPAL R GR DR+IE P+PD + +  +      +M L  +V+L      
Sbjct:   666 VLAATNRPNSIDPALRRFGRFDREIEIPVPDEQGRYEILLTKTKKMKLDPDVNLRKIAKE 725

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
                   A++A +C EA +  ++++
Sbjct:   726 CHGYVGADLAQLCFEAAIQCIKEH 749


>TAIR|locus:2066128 [details] [associations]
            symbol:ftsh3 "FTSH protease 3" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=ISM;IDA] [GO:0006508 "proteolysis" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0004176
            "ATP-dependent peptidase activity" evidence=ISS] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005739 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0005743 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
            GO:GO:0004222 EMBL:AC005315 GO:GO:0030163 eggNOG:COG0465
            HOGENOM:HOG000217277 KO:K08956 OMA:WDEKDFR TIGRFAMs:TIGR01241
            HSSP:Q9WZ49 GO:GO:0009535 GO:GO:0004176 EMBL:BT002743 EMBL:AY063914
            EMBL:AK226271 IPI:IPI00525466 PIR:T02738 RefSeq:NP_850129.1
            UniGene:At.24335 ProteinModelPortal:Q84WU8 SMR:Q84WU8
            MEROPS:M41.022 PaxDb:Q84WU8 PRIDE:Q84WU8 EnsemblPlants:AT2G29080.1
            GeneID:817456 KEGG:ath:AT2G29080 GeneFarm:2506 TAIR:At2g29080
            InParanoid:Q84WU8 PhylomeDB:Q84WU8 ProtClustDB:CLSN2692039
            Genevestigator:Q84WU8 Uniprot:Q84WU8
        Length = 809

 Score = 252 (93.8 bits), Expect = 2.0e-20, P = 2.0e-20
 Identities = 63/156 (40%), Positives = 88/156 (56%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR +F+ A++ AP+IIFIDE+DAI  AR     G + E +  L +LL +MDGF  T  V 
Sbjct:   403 VRHLFQEARQAAPSIIFIDEIDAIGRARGRGGLGGNDERESTLNQLLVEMDGFGTTAGVV 462

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-EVDLE-DYVSR--- 116
             V+  TNR D LD ALLRPGR DR+I    PD + +  +F++ L   ++D E  Y S+   
Sbjct:   463 VLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFKIYLKKIKLDHEPSYYSQRLA 522

Query:   117 --PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150
                   + A+IA +C EA + A R     +    FE
Sbjct:   523 ALTPGFAGADIANVCNEAALIAARHEGATVTMAHFE 558


>GENEDB_PFALCIPARUM|PF14_0126 [details] [associations]
            symbol:PF14_0126 "hypothetical protein,
            conserved" species:5833 "Plasmodium falciparum" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 EMBL:AE014187 HSSP:Q01853 GO:GO:0017111
            RefSeq:XP_001348299.1 ProteinModelPortal:Q8ILW7 IntAct:Q8ILW7
            MINT:MINT-1576109 EnsemblProtists:PF14_0126:mRNA GeneID:811707
            KEGG:pfa:PF14_0126 EuPathDB:PlasmoDB:PF3D7_1412700 Uniprot:Q8ILW7
        Length = 1219

 Score = 230 (86.0 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
 Identities = 45/103 (43%), Positives = 67/103 (65%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R++F+ A+EN P +IF DE+D+IA  R + Q        R+L +LLN++DG    +NV 
Sbjct:   917 IRNIFKKARENHPCVIFFDEIDSIAVNRNNNQNFVSN---RVLCQLLNEIDGIKNRLNVI 973

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL 104
             ++ ATNR D +DPAL+RPGR DR I  PLP+   +  + + NL
Sbjct:   974 ILAATNRPDLIDPALMRPGRFDRIIYVPLPNYSSRFAILKKNL 1016

 Score = 134 (52.2 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
 Identities = 34/99 (34%), Positives = 53/99 (53%)

Query:     7 RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMAT 66
             R  +EN   IIFIDE++ +   R +     +  +      LLN MDG  +  +  +I AT
Sbjct:   549 RYQEENKCTIIFIDEIEILCKKREE-----NNNMNIYTSVLLNNMDGIKKHTHTILIGAT 603

Query:    67 NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS 105
             N  + +D AL R GR D++IE  LP+ + +  +FQ  L+
Sbjct:   604 NYINKIDLALRRSGRFDKEIEVNLPNLKDRISIFQKKLN 642

 Score = 52 (23.4 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query:   119 KISAAEIAAICQEAGMHAVR---KNRYV-ILPK 147
             K S AEI  IC+EA + A+R   K R + I PK
Sbjct:  1119 KYSGAEIVNICREASICALRQTLKKRNIKINPK 1151


>UNIPROTKB|Q8ILW7 [details] [associations]
            symbol:PF14_0126 "AAA family ATPase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 EMBL:AE014187 HSSP:Q01853 GO:GO:0017111
            RefSeq:XP_001348299.1 ProteinModelPortal:Q8ILW7 IntAct:Q8ILW7
            MINT:MINT-1576109 EnsemblProtists:PF14_0126:mRNA GeneID:811707
            KEGG:pfa:PF14_0126 EuPathDB:PlasmoDB:PF3D7_1412700 Uniprot:Q8ILW7
        Length = 1219

 Score = 230 (86.0 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
 Identities = 45/103 (43%), Positives = 67/103 (65%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R++F+ A+EN P +IF DE+D+IA  R + Q        R+L +LLN++DG    +NV 
Sbjct:   917 IRNIFKKARENHPCVIFFDEIDSIAVNRNNNQNFVSN---RVLCQLLNEIDGIKNRLNVI 973

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL 104
             ++ ATNR D +DPAL+RPGR DR I  PLP+   +  + + NL
Sbjct:   974 ILAATNRPDLIDPALMRPGRFDRIIYVPLPNYSSRFAILKKNL 1016

 Score = 134 (52.2 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
 Identities = 34/99 (34%), Positives = 53/99 (53%)

Query:     7 RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMAT 66
             R  +EN   IIFIDE++ +   R +     +  +      LLN MDG  +  +  +I AT
Sbjct:   549 RYQEENKCTIIFIDEIEILCKKREE-----NNNMNIYTSVLLNNMDGIKKHTHTILIGAT 603

Query:    67 NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS 105
             N  + +D AL R GR D++IE  LP+ + +  +FQ  L+
Sbjct:   604 NYINKIDLALRRSGRFDKEIEVNLPNLKDRISIFQKKLN 642

 Score = 52 (23.4 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query:   119 KISAAEIAAICQEAGMHAVR---KNRYV-ILPK 147
             K S AEI  IC+EA + A+R   K R + I PK
Sbjct:  1119 KYSGAEIVNICREASICALRQTLKKRNIKINPK 1151


>UNIPROTKB|P96281 [details] [associations]
            symbol:Rv0435c "Transitional endoplasmic reticulum ATPase"
            species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
            wall" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            Pfam:PF02359 GO:GO:0005886 GO:GO:0005524 GO:GO:0005618
            GO:GO:0051301 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
            EMBL:BX842573 HSSP:Q01853 HOGENOM:HOG000223225 GO:GO:0017111
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692 KO:K13525
            SMART:SM01073 EMBL:CP003248 PIR:A70632 RefSeq:NP_214949.1
            RefSeq:NP_334860.1 RefSeq:YP_006513761.1 SMR:P96281
            EnsemblBacteria:EBMYCT00000001241 EnsemblBacteria:EBMYCT00000071017
            GeneID:13318302 GeneID:886352 GeneID:923768 KEGG:mtc:MT0451
            KEGG:mtu:Rv0435c KEGG:mtv:RVBD_0435c PATRIC:18122702
            TubercuList:Rv0435c OMA:KTHGFAG ProtClustDB:CLSK871802
            Uniprot:P96281
        Length = 728

 Score = 250 (93.1 bits), Expect = 2.8e-20, P = 2.8e-20
 Identities = 55/144 (38%), Positives = 92/144 (63%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VR++FR A+++AP+++F+DE+DA+A  R   Q+       R++  LL ++DG D   +V 
Sbjct:   546 VRELFRRARDSAPSLVFLDELDALAPRR--GQSFDSGVSDRVVAALLTELDGIDPLRDVV 603

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             ++ ATNR D +DPALLRPGRL+R +    PD   +R + +     + LS +VDL++  + 
Sbjct:   604 MLGATNRPDLIDPALLRPGRLERLVFVEPPDAAARREILRTAGKSIPLSSDVDLDEVAAG 663

Query:   117 PDKISAAEIAAICQEAGMHAVRKN 140
              D  SAA+  A+ +EA + A+R++
Sbjct:   664 LDGYSAADCVALLREAALTAMRRS 687


>ASPGD|ASPL0000072959 [details] [associations]
            symbol:AN4557 species:162425 "Emericella nidulans"
            [GO:0097002 "mitochondrial inner boundary membrane" evidence=IEA]
            [GO:0005745 "m-AAA complex" evidence=IEA] [GO:0008237
            "metallopeptidase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            [GO:0006508 "proteolysis" evidence=IEA] [GO:0006461 "protein
            complex assembly" evidence=IEA] [GO:0006465 "signal peptide
            processing" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
            GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
            eggNOG:COG0465 HOGENOM:HOG000217277 KO:K08956 GO:GO:0017111
            TIGRFAMs:TIGR01241 OMA:LYRFVTT MEROPS:M41.002 OrthoDB:EOG4J14HG
            EMBL:BN001303 EMBL:AACD01000078 RefSeq:XP_662161.1
            ProteinModelPortal:Q5B4H3 SMR:Q5B4H3 STRING:Q5B4H3
            EnsemblFungi:CADANIAT00005881 GeneID:2872358 KEGG:ani:AN4557.2
            Uniprot:Q5B4H3
        Length = 883

 Score = 251 (93.4 bits), Expect = 3.0e-20, P = 3.0e-20
 Identities = 61/158 (38%), Positives = 89/158 (56%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQ-TGADREVQRILMELLNQMDGFDQTVNV 60
             VRD+F  A++N P IIFIDE+DAI  +R     +G + E +  L ++L +MDGF+ +  V
Sbjct:   483 VRDLFANARKNTPCIIFIDEIDAIGKSRSAKNFSGGNDERESTLNQILTEMDGFNTSDQV 542

Query:    61 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSDEVDLEDYVSRPDKI 120
              V+  TNR D LD AL+RPGR DR I    P    ++ +F+++L   V  ED      ++
Sbjct:   543 VVLAGTNRPDVLDKALMRPGRFDRHISIDRPTMDGRKQIFRVHLKKIVTKEDMDYLTGRL 602

Query:   121 SA-------AEIAAICQEAGMHAVRKNRYVILPKDFEK 151
             SA       A+IA    EA + A R+N   +  K FE+
Sbjct:   603 SALTPGFAGADIANCVNEAALVAARENAESVTMKHFER 640


>POMBASE|SPAC1565.08 [details] [associations]
            symbol:cdc48 "AAA family ATPase Cdc48" species:4896
            "Schizosaccharomyces pombe" [GO:0000790 "nuclear chromatin"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005789
            "endoplasmic reticulum membrane" evidence=ISO] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=IGI] [GO:0006906 "vesicle fusion"
            evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISM]
            [GO:0030433 "ER-associated protein catabolic process" evidence=ISO]
            [GO:0030970 "retrograde protein transport, ER to cytosol"
            evidence=ISS] [GO:0033047 "regulation of mitotic sister chromatid
            segregation" evidence=IGI] [GO:0033554 "cellular response to
            stress" evidence=IGI] [GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase
            complex" evidence=ISO] [GO:0051230 "spindle disassembly"
            evidence=TAS] [GO:0061166 "establishment of endoplasmic reticulum
            localization involved in endoplasmic reticulum polarization at cell
            division site" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 PomBase:SPAC1565.08 Pfam:PF02359
            GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
            GO:GO:0033554 GO:GO:0016887 GO:GO:0000790 GO:GO:0030433
            eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0006906 GO:GO:0033047 HOGENOM:HOG000223224 KO:K13525
            InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0061166
            OrthoDB:EOG47H8Z3 RefSeq:NP_593287.2 ProteinModelPortal:Q9P3A7
            SMR:Q9P3A7 IntAct:Q9P3A7 STRING:Q9P3A7 PRIDE:Q9P3A7
            EnsemblFungi:SPAC1565.08.1 GeneID:2542744 KEGG:spo:SPAC1565.08
            OMA:IVTIHPC NextBio:20803789 GO:GO:0034098 GO:GO:0030970
            GO:GO:0051230 Uniprot:Q9P3A7
        Length = 815

 Score = 250 (93.1 bits), Expect = 3.4e-20, P = 3.4e-20
 Identities = 59/156 (37%), Positives = 88/156 (56%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             VRD+F  A+  AP ++F+DE+D+IA AR  A  G      R++ +LL +MDG +   NV 
Sbjct:   579 VRDIFDKARAAAPCVVFLDELDSIAKAR-GASAGDSGGGDRVVNQLLTEMDGVNSKKNVF 637

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNL-----SDEVDLEDYVSR 116
             VI ATNR D +DPAL+RPGRLD+ I  PLPD   +  + Q  L     +++VDL      
Sbjct:   638 VIGATNRPDQIDPALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVAKA 697

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKG 152
                 S A++  + Q A   A++ +    + ++ E G
Sbjct:   698 THGFSGADLEFVVQRAVKLAIKDSIEEDIKRENETG 733

 Score = 249 (92.7 bits), Expect = 4.3e-20, P = 4.3e-20
 Identities = 58/153 (37%), Positives = 93/153 (60%)

Query:     2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 61
             +R  F  A++N+PAIIFIDE+D+IA  R   +T  + E +R++ +LL  MDG     NV 
Sbjct:   306 LRKAFEEAEKNSPAIIFIDEIDSIAPKR--EKTNGEVE-RRVVSQLLTLMDGMKARSNVV 362

Query:    62 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSR 116
             V+ ATNR +++DPAL R GR DR+++  +PD   +  + +     M L+D+VDLE   + 
Sbjct:   363 VMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAE 422

Query:   117 PDKISAAEIAAICQEAGMHAVRKNRYVI-LPKD 148
                   +++A++C EA M  +R+   +I L +D
Sbjct:   423 THGYVGSDLASLCSEAAMQQIREKMDMIDLDED 455

WARNING:  HSPs involving 394 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      168       168   0.00079  108 3  11 22  0.49    31
                                                     31  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  644
  No. of states in DFA:  533 (57 KB)
  Total size of DFA:  122 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.02u 0.14s 17.16t   Elapsed:  00:00:01
  Total cpu time:  17.05u 0.14s 17.19t   Elapsed:  00:00:01
  Start:  Fri May 10 05:33:03 2013   End:  Fri May 10 05:33:04 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with RPT3 RPT3 RPT3 AT5G58290	protein from Arabidopsis thaliana	6.4e-83
BLAST match view associations BLAST with psmC4 psmC4 psmC4 HIV TAT binding-protein-related	gene from Dictyostelium discoideum	4.6e-73
BLAST match view associations BLAST with Rpt3 Rpt3 Rpt3 Regulatory particle triple-A ATPase 3	protein from Drosophila melanogaster	7.5e-73
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Bos taurus	6.1e-71
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Bos taurus	6.1e-71
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 Uncharacterized protein	protein from Canis lupus familiaris	6.1e-71
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Homo sapiens	6.1e-71
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Macaca fascicularis	6.1e-71
BLAST match view associations BLAST with Psmc4 Psmc4 Psmc4 proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein from Mus musculus	6.1e-71
BLAST match view associations BLAST with Psmc4 Psmc4 Psmc4 proteasome (prosome, macropain) 26S subunit, ATPase, 4	gene from Rattus norvegicus	6.1e-71
BLAST match view associations BLAST with psmc4 psmc4 psmc4 proteasome (prosome, macropain) 26S subunit, ATPase, 4	gene_product from Danio rerio	1.6e-70
BLAST match view associations BLAST with rpt-3 rpt-3 rpt-3	gene from Caenorhabditis elegans	8.9e-70
BLAST match view associations BLAST with Rpt3R Rpt3R Rpt3R Regulatory particle triple-A ATPase 3-related	protein from Drosophila melanogaster	5.6e-68
BLAST match view associations BLAST with PFD0665c PFD0665c PFD0665c 26s proteasome aaa-ATPase subunit Rpt3, putative	gene from Plasmodium falciparum	1.7e-66
BLAST match view associations BLAST with PFD0665c PFD0665c PFD0665c 26S proteasome AAA-ATPase subunit RPT3, putative	protein from Plasmodium falciparum 3D7	1.7e-66
BLAST match view associations BLAST with RPT3 RPT3 RPT3 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	1.9e-58
BLAST match view associations BLAST with PR26 PR26 PR26	gene_product from Candida albicans	6.6e-58
BLAST match view associations BLAST with PR26 PR26 PR26 Likely 26S proteasome regulatory particle ATPase Rpt3p	protein from Candida albicans SC5314	6.6e-58
BLAST match view associations BLAST with rpt-2 rpt-2 rpt-2	gene from Caenorhabditis elegans	2.1e-45
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Proteasome (Prosome, macropain) 26S subunit, ATPase, 1	protein from Bos taurus	1.2e-44
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Uncharacterized protein	protein from Canis lupus familiaris	1.2e-44
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Homo sapiens	1.2e-44
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Homo sapiens	1.2e-44
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Uncharacterized protein	protein from Sus scrofa	1.2e-44
BLAST match view associations BLAST with Psmc1 Psmc1 Psmc1 protease (prosome, macropain) 26S subunit, ATPase 1	protein from Mus musculus	1.2e-44
BLAST match view associations BLAST with Psmc1 Psmc1 Psmc1 proteasome (prosome, macropain) 26S subunit, ATPase, 1	gene from Rattus norvegicus	1.2e-44
BLAST match view associations BLAST with psmC1 psmC1 psmC1 TAT binding protein alpha	gene from Dictyostelium discoideum	1.5e-44
BLAST match view associations BLAST with psmc1a psmc1a psmc1a proteasome (prosome, macropain) 26S subunit, ATPase, 1a	gene_product from Danio rerio	1.5e-44
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	3.1e-44
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	3.1e-44
BLAST match view associations BLAST with psmc1b psmc1b psmc1b proteasome (prosome, macropain) 26S subunit, ATPase, 1b	gene_product from Danio rerio	3.1e-44
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	1.3e-43
BLAST match view associations BLAST with Rpt2 Rpt2 Rpt2 Regulatory particle triple-A ATPase 2	protein from Drosophila melanogaster	2.2e-43
BLAST match view associations BLAST with RPT2a RPT2a RPT2a regulatory particle AAA-ATPase 2A	protein from Arabidopsis thaliana	9.3e-43
BLAST match view associations BLAST with RPT2b RPT2b RPT2b regulatory particle AAA-ATPase 2b	protein from Arabidopsis thaliana	2.5e-42
BLAST match view associations BLAST with PF10_0081 PF10_0081 PF10_0081 26S proteasome regulatory subunit 4, putative	gene from Plasmodium falciparum	3.2e-42
BLAST match view associations BLAST with PF10_0081 PF10_0081 PF10_0081 26S proteasome regulatory subunit 4, putative	protein from Plasmodium falciparum 3D7	3.2e-42
BLAST match view associations BLAST with RPT2 RPT2 RPT2 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	1.8e-39
BLAST match view associations BLAST with psmC3 psmC3 psmC3 26S proteasome ATPase 3 subunit	gene from Dictyostelium discoideum	7.8e-39
BLAST match view associations BLAST with C10G11.8 C10G11.8 C10G11.8	gene from Caenorhabditis elegans	7.8e-39
BLAST match view associations BLAST with PF11_0314 PF11_0314 PF11_0314 26S protease subunit regulatory subunit 6a, putative	gene from Plasmodium falciparum	1.6e-38
BLAST match view associations BLAST with PF11_0314 PF11_0314 PF11_0314 26S protease subunit regulatory subunit 6a, putative	protein from Plasmodium falciparum 3D7	1.6e-38
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 Uncharacterized protein	protein from Gallus gallus	2.1e-38
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 Uncharacterized protein	protein from Gallus gallus	2.1e-38
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 Uncharacterized protein	protein from Bos taurus	2.1e-38
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 Uncharacterized protein	protein from Canis lupus familiaris	2.1e-38
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 26S protease regulatory subunit 6A	protein from Homo sapiens	2.1e-38
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 26S protease regulatory subunit 6A	protein from Homo sapiens	2.1e-38
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 Uncharacterized protein	protein from Sus scrofa	2.1e-38
BLAST match view associations BLAST with pan pan pan Proteasome-activating nucleotidase	protein from Methanocaldococcus jannaschii DSM 2661	2.1e-38
BLAST match view associations BLAST with Psmc3 Psmc3 Psmc3 proteasome (prosome, macropain) 26S subunit, ATPase 3	protein from Mus musculus	2.1e-38
BLAST match view associations BLAST with Psmc3 Psmc3 Psmc3 proteasome (prosome, macropain) 26S subunit, ATPase 3	gene from Rattus norvegicus	2.1e-38
BLAST match view associations BLAST with Psmc3 Psmc3 Psmc3 Proteasome (Prosome, macropain) 26S subunit, ATPase 3, isoform CRA_a	protein from Rattus norvegicus	2.1e-38
BLAST match view associations BLAST with RPT5A RPT5A RPT5A regulatory particle triple-A ATPase 5A	protein from Arabidopsis thaliana	3.4e-38
BLAST match view associations BLAST with rpt-4 rpt-4 rpt-4	gene from Caenorhabditis elegans	4.3e-38
BLAST match view associations BLAST with rpt-4 rpt-4 rpt-4 Probable 26S protease regulatory subunit 10B	protein from Caenorhabditis elegans	4.3e-38
BLAST match view associations BLAST with psmc3-b psmc3-b psmc3-b 26S protease regulatory subunit 6A-B	protein from Xenopus laevis	5.5e-38
BLAST match view associations BLAST with psmc3 psmc3 psmc3 proteasome (prosome, macropain) 26S subunit, ATPase, 3	gene_product from Danio rerio	7.0e-38
BLAST match view associations BLAST with AT1G45000 AT1G45000 AT1G45000	protein from Arabidopsis thaliana	1.5e-37
BLAST match view associations BLAST with RPT2 RPT2 RPT2	gene_product from Candida albicans	1.9e-37
BLAST match view associations BLAST with RPT5B RPT5B RPT5B 26S proteasome AAA-ATPase subunit RPT5B	protein from Arabidopsis thaliana	1.9e-37
BLAST match view associations BLAST with LOC100687152 LOC100687152 LOC100687152 Uncharacterized protein	protein from Canis lupus familiaris	2.4e-37
BLAST match view associations BLAST with rpt-6 rpt-6 rpt-6	gene from Caenorhabditis elegans	3.0e-37
BLAST match view associations BLAST with Rpt6 Rpt6 Rpt6 Regulatory particle triple-A ATPase 6	protein from Drosophila melanogaster	8.0e-37
BLAST match view associations BLAST with rpt-5 rpt-5 rpt-5	gene from Caenorhabditis elegans	8.0e-37
BLAST match view associations BLAST with rpt-5 rpt-5 rpt-5 Protein RPT-5	protein from Caenorhabditis elegans	8.0e-37
BLAST match view associations BLAST with Rpt4 Rpt4 Rpt4 Regulatory particle triple-A ATPase 4	protein from Drosophila melanogaster	1.0e-36
BLAST match view associations BLAST with RPT4A RPT4A RPT4A regulatory particle triple-A ATPase 4A	protein from Arabidopsis thaliana	1.0e-36
BLAST match view associations BLAST with psmC6 psmC6 psmC6 26S protease regulatory subunit S10B	gene from Dictyostelium discoideum	1.3e-36
BLAST match view associations BLAST with Rpt5 Rpt5 Rpt5 Regulatory particle triple-A ATPase 5	protein from Drosophila melanogaster	1.3e-36
BLAST match view associations BLAST with Rpt4R Rpt4R Rpt4R Regulatory particle triple-A ATPase 4-related	protein from Drosophila melanogaster	1.7e-36
BLAST match view associations BLAST with RPT5 RPT5 RPT5 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	1.7e-36
BLAST match view associations BLAST with Rpt1 Rpt1 Rpt1 Regulatory particle triple-A ATPase 1	protein from Drosophila melanogaster	2.1e-36
BLAST match view associations BLAST with F56F11.4 F56F11.4 F56F11.4	gene from Caenorhabditis elegans	2.1e-36
BLAST match view associations BLAST with OsRPT4 OsRPT4 OsRPT4 26S proteasome regulatory particle triple-A ATPase subunit4	protein from Oryza sativa Japonica Group	3.5e-36
BLAST match view associations BLAST with RPT6 RPT6 RPT6	gene_product from Candida albicans	5.7e-36
BLAST match view associations BLAST with RPT4 RPT4 RPT4 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	5.7e-36
BLAST match view associations BLAST with Rpt6R Rpt6R Rpt6R Regulatory particle triple-A ATPase 6-related	protein from Drosophila melanogaster	7.2e-36
BLAST match view associations BLAST with PFL2345c PFL2345c PFL2345c tat-binding protein homolog	gene from Plasmodium falciparum	7.2e-36
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 Uncharacterized protein	protein from Gallus gallus	7.2e-36
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Bos taurus	7.2e-36
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Homo sapiens	7.2e-36
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Sus scrofa	7.2e-36
BLAST match view associations BLAST with GSTENG00035021001 GSTENG00035021001 GSTENG00035021001 Chromosome 2 SCAF15106, whole genome shotgun sequence.	protein from Tetraodon nigroviridis	7.2e-36
BLAST match view associations BLAST with Q6AZU7 Q6AZU7 Q6AZU7 Putative uncharacterized protein	protein from Xenopus laevis	7.2e-36
BLAST match view associations BLAST with psmc5 psmc5 psmc5 Putative uncharacterized protein MGC75584	protein from Xenopus (Silurana) tropicalis	7.2e-36
BLAST match view associations BLAST with PFL2345c PFL2345c PFL2345c Tat-binding protein homolog	protein from Plasmodium falciparum 3D7	7.2e-36
BLAST match view associations BLAST with Psmc5 Psmc5 Psmc5 protease (prosome, macropain) 26S subunit, ATPase 5	protein from Mus musculus	7.2e-36
BLAST match view associations BLAST with Psmc5 Psmc5 Psmc5 proteasome (prosome, macropain) 26S subunit, ATPase, 5	gene from Rattus norvegicus	7.2e-36
BLAST match view associations BLAST with RPT6A RPT6A RPT6A regulatory particle triple-A ATPase 6A	protein from Arabidopsis thaliana	7.2e-36
BLAST match view associations BLAST with AT5G20000 AT5G20000 AT5G20000	protein from Arabidopsis thaliana	7.2e-36
BLAST match view associations BLAST with psmc5 psmc5 psmc5 proteasome (prosome, macropain) 26S subunit, ATPase, 5	gene_product from Danio rerio	7.2e-36