Query 030960
Match_columns 168
No_of_seqs 149 out of 1222
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 07:08:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 2.9E-43 6.2E-48 275.0 17.1 160 1-160 232-396 (406)
2 KOG0730 AAA+-type ATPase [Post 100.0 2.7E-39 5.8E-44 268.0 13.4 156 2-160 516-678 (693)
3 KOG0733 Nuclear AAA ATPase (VC 100.0 2.9E-37 6.3E-42 254.1 15.8 156 2-160 593-773 (802)
4 KOG0734 AAA+-type ATPase conta 100.0 1.4E-36 3E-41 247.2 13.6 154 2-158 385-543 (752)
5 KOG0727 26S proteasome regulat 100.0 6.9E-36 1.5E-40 225.3 14.8 168 1-168 236-408 (408)
6 KOG0738 AAA+-type ATPase [Post 100.0 3.3E-36 7.2E-41 237.3 10.5 163 1-167 292-481 (491)
7 KOG0728 26S proteasome regulat 100.0 1.2E-34 2.6E-39 218.4 13.7 159 1-159 228-391 (404)
8 PTZ00454 26S protease regulato 100.0 4E-34 8.8E-39 232.3 17.5 166 2-167 227-397 (398)
9 KOG0736 Peroxisome assembly fa 100.0 2E-34 4.3E-39 242.1 16.0 158 2-160 753-936 (953)
10 KOG0652 26S proteasome regulat 100.0 9.3E-34 2E-38 214.6 12.1 167 1-167 252-423 (424)
11 KOG0731 AAA+-type ATPase conta 100.0 2.8E-33 6.1E-38 237.5 15.2 156 2-157 392-554 (774)
12 KOG0726 26S proteasome regulat 100.0 1.7E-33 3.7E-38 215.6 11.3 161 1-161 266-431 (440)
13 COG0465 HflB ATP-dependent Zn 100.0 4.2E-33 9.2E-38 232.5 14.6 157 2-158 231-392 (596)
14 KOG0733 Nuclear AAA ATPase (VC 100.0 3E-33 6.4E-38 230.5 12.0 135 2-139 271-414 (802)
15 CHL00195 ycf46 Ycf46; Provisio 100.0 6E-32 1.3E-36 224.0 16.5 159 2-165 307-472 (489)
16 PRK03992 proteasome-activating 100.0 1.1E-31 2.4E-36 218.2 17.6 162 2-163 213-379 (389)
17 COG0464 SpoVK ATPases of the A 100.0 6.9E-32 1.5E-36 225.6 15.6 157 2-161 324-488 (494)
18 CHL00206 ycf2 Ycf2; Provisiona 100.0 1E-31 2.2E-36 242.1 15.6 150 2-160 1721-1881(2281)
19 KOG0739 AAA+-type ATPase [Post 100.0 1.1E-32 2.5E-37 211.6 6.3 155 1-160 213-420 (439)
20 TIGR01241 FtsH_fam ATP-depende 100.0 9.8E-31 2.1E-35 218.6 16.9 157 2-158 136-297 (495)
21 TIGR01243 CDC48 AAA family ATP 100.0 1.2E-30 2.5E-35 226.8 17.6 158 2-161 535-715 (733)
22 PRK10733 hflB ATP-dependent me 100.0 1.1E-30 2.4E-35 223.6 17.1 158 2-159 233-395 (644)
23 PTZ00361 26 proteosome regulat 100.0 6.2E-31 1.3E-35 215.3 14.3 157 2-158 265-426 (438)
24 KOG0735 AAA+-type ATPase [Post 100.0 7.2E-31 1.6E-35 219.4 14.0 135 2-139 749-888 (952)
25 KOG0729 26S proteasome regulat 100.0 6E-31 1.3E-35 199.9 10.2 160 1-160 258-422 (435)
26 CHL00176 ftsH cell division pr 100.0 6.2E-30 1.4E-34 217.7 15.7 156 2-157 264-424 (638)
27 COG1223 Predicted ATPase (AAA+ 100.0 5.2E-30 1.1E-34 193.8 11.6 156 2-161 199-360 (368)
28 TIGR01242 26Sp45 26S proteasom 100.0 1.4E-28 3.1E-33 198.7 17.4 155 2-156 204-363 (364)
29 KOG0737 AAA+-type ATPase [Post 100.0 4.9E-29 1.1E-33 195.9 12.0 153 1-158 174-361 (386)
30 KOG0730 AAA+-type ATPase [Post 99.9 8.1E-27 1.8E-31 194.1 12.8 151 2-162 266-422 (693)
31 KOG0740 AAA+-type ATPase [Post 99.9 4.6E-27 9.9E-32 189.7 8.7 155 1-160 233-408 (428)
32 KOG0651 26S proteasome regulat 99.9 3.1E-27 6.8E-32 182.2 6.8 157 1-157 213-374 (388)
33 TIGR03689 pup_AAA proteasome A 99.9 2.6E-25 5.6E-30 184.7 16.3 155 2-158 274-480 (512)
34 KOG0741 AAA+-type ATPase [Post 99.9 1.2E-26 2.7E-31 189.2 7.4 158 2-160 305-494 (744)
35 KOG0732 AAA+-type ATPase conta 99.9 1.2E-25 2.6E-30 195.8 12.1 158 2-162 352-531 (1080)
36 TIGR01243 CDC48 AAA family ATP 99.9 2.1E-23 4.4E-28 181.7 16.0 157 2-161 260-440 (733)
37 PLN00020 ribulose bisphosphate 99.9 7.1E-23 1.5E-27 162.7 12.4 134 1-139 195-354 (413)
38 KOG0735 AAA+-type ATPase [Post 99.8 4.1E-19 8.9E-24 149.4 12.4 165 1-166 482-658 (952)
39 KOG0742 AAA+-type ATPase [Post 99.8 7.1E-18 1.5E-22 135.0 10.8 148 2-155 431-611 (630)
40 KOG0736 Peroxisome assembly fa 99.7 9.1E-16 2E-20 130.4 11.2 152 2-159 479-656 (953)
41 COG0464 SpoVK ATPases of the A 99.6 1.5E-14 3.2E-19 121.4 15.6 154 2-159 65-229 (494)
42 KOG0743 AAA+-type ATPase [Post 99.6 2E-14 4.4E-19 116.4 9.1 117 12-128 285-412 (457)
43 KOG0744 AAA+-type ATPase [Post 99.5 1E-14 2.2E-19 113.9 7.0 152 2-157 234-415 (423)
44 PF00004 AAA: ATPase family as 99.5 3.4E-14 7.4E-19 98.3 8.2 85 2-90 46-132 (132)
45 TIGR02639 ClpA ATP-dependent C 99.1 5.4E-10 1.2E-14 97.9 9.1 145 2-158 263-431 (731)
46 PRK11034 clpA ATP-dependent Cl 99.1 4.3E-10 9.3E-15 98.4 8.1 145 2-158 267-435 (758)
47 CHL00181 cbbX CbbX; Provisiona 99.0 6.7E-09 1.5E-13 81.7 12.7 118 13-139 122-257 (287)
48 TIGR00763 lon ATP-dependent pr 99.0 6.6E-09 1.4E-13 91.7 11.7 138 3-154 405-584 (775)
49 TIGR02928 orc1/cdc6 family rep 98.9 1.5E-08 3.3E-13 81.8 12.1 141 3-157 118-275 (365)
50 PRK00411 cdc6 cell division co 98.9 3.7E-08 8.1E-13 80.3 11.6 132 13-157 138-283 (394)
51 TIGR02880 cbbX_cfxQ probable R 98.9 3.9E-08 8.5E-13 77.2 11.2 125 3-139 114-256 (284)
52 PRK00080 ruvB Holliday junctio 98.8 3.2E-08 6.9E-13 79.2 10.6 98 58-158 149-252 (328)
53 TIGR00635 ruvB Holliday juncti 98.8 3.4E-08 7.4E-13 78.0 10.6 96 58-156 128-229 (305)
54 TIGR02881 spore_V_K stage V sp 98.8 1.1E-07 2.3E-12 73.8 12.6 124 3-139 98-241 (261)
55 TIGR02902 spore_lonB ATP-depen 98.8 4.8E-08 1E-12 82.9 9.6 91 60-155 235-331 (531)
56 TIGR03345 VI_ClpV1 type VI sec 98.8 5.7E-08 1.2E-12 86.4 9.9 139 2-153 268-428 (852)
57 TIGR00362 DnaA chromosomal rep 98.7 1.2E-07 2.5E-12 78.0 11.0 129 13-157 199-338 (405)
58 PRK00149 dnaA chromosomal repl 98.7 1.2E-07 2.6E-12 78.9 9.8 129 13-157 211-350 (450)
59 PRK06893 DNA replication initi 98.5 4.3E-07 9.4E-12 69.2 7.7 128 13-154 91-228 (229)
60 PTZ00112 origin recognition co 98.5 9.1E-07 2E-11 78.1 10.3 137 2-157 856-1007(1164)
61 PRK14088 dnaA chromosomal repl 98.5 7.6E-07 1.6E-11 74.0 8.6 129 13-157 194-333 (440)
62 PRK07940 DNA polymerase III su 98.4 1.6E-06 3.5E-11 71.0 9.4 108 2-128 102-214 (394)
63 PRK10865 protein disaggregatio 98.4 5.7E-07 1.2E-11 80.3 6.9 88 2-102 259-352 (857)
64 TIGR03346 chaperone_ClpB ATP-d 98.4 5.1E-07 1.1E-11 80.6 6.4 88 2-102 254-347 (852)
65 PRK14961 DNA polymerase III su 98.4 4.7E-06 1E-10 67.7 11.5 117 14-154 120-242 (363)
66 PRK06645 DNA polymerase III su 98.4 6.3E-06 1.4E-10 69.6 11.3 132 2-154 113-254 (507)
67 TIGR02397 dnaX_nterm DNA polym 98.3 5.5E-06 1.2E-10 66.6 10.3 129 2-154 102-240 (355)
68 PRK14087 dnaA chromosomal repl 98.3 3.1E-06 6.7E-11 70.6 8.8 131 12-157 205-349 (450)
69 CHL00095 clpC Clp protease ATP 98.3 4.4E-06 9.5E-11 74.4 10.2 121 2-135 260-400 (821)
70 PRK14086 dnaA chromosomal repl 98.3 5.6E-06 1.2E-10 70.9 10.0 129 13-158 377-517 (617)
71 PRK10787 DNA-binding ATP-depen 98.3 1.1E-05 2.3E-10 71.5 11.5 127 15-155 418-581 (784)
72 PRK14962 DNA polymerase III su 98.3 1.2E-05 2.7E-10 67.4 11.3 130 2-155 102-241 (472)
73 TIGR03420 DnaA_homol_Hda DnaA 98.3 4.6E-06 9.9E-11 62.9 7.6 124 14-153 91-225 (226)
74 PRK12422 chromosomal replicati 98.2 6.1E-06 1.3E-10 68.7 8.6 130 13-157 202-344 (445)
75 TIGR03015 pepcterm_ATPase puta 98.2 3E-05 6.5E-10 60.0 11.7 132 9-157 119-267 (269)
76 PRK08727 hypothetical protein; 98.2 9E-06 2E-10 62.1 8.6 128 13-156 93-231 (233)
77 PRK14956 DNA polymerase III su 98.2 2.1E-05 4.6E-10 65.7 10.9 117 13-153 121-243 (484)
78 PRK05563 DNA polymerase III su 98.2 3.2E-05 6.9E-10 66.2 11.8 128 2-153 104-241 (559)
79 PRK12323 DNA polymerase III su 98.2 9.6E-06 2.1E-10 69.9 8.5 101 13-133 124-230 (700)
80 PRK13342 recombination factor 98.2 7.7E-05 1.7E-09 61.6 13.5 129 2-157 77-220 (413)
81 PRK08084 DNA replication initi 98.1 8.5E-06 1.8E-10 62.3 7.0 124 15-154 99-234 (235)
82 PRK07994 DNA polymerase III su 98.1 4.6E-05 1E-09 66.0 11.4 117 13-153 119-241 (647)
83 PRK07003 DNA polymerase III su 98.1 3.8E-05 8.2E-10 67.3 10.7 112 2-133 104-225 (830)
84 TIGR00678 holB DNA polymerase 98.1 2.7E-05 6E-10 57.3 8.2 82 3-103 82-167 (188)
85 PRK14951 DNA polymerase III su 98.1 6.8E-05 1.5E-09 64.7 11.6 116 14-153 125-246 (618)
86 PRK12402 replication factor C 98.0 0.00013 2.9E-09 58.1 12.0 117 14-155 126-248 (337)
87 PRK05642 DNA replication initi 98.0 3.6E-05 7.8E-10 58.8 8.4 125 14-154 98-233 (234)
88 PRK14958 DNA polymerase III su 98.0 2.7E-05 5.8E-10 66.0 8.1 118 14-155 120-243 (509)
89 PRK14960 DNA polymerase III su 98.0 5E-05 1.1E-09 65.7 9.6 118 13-154 118-241 (702)
90 PRK14964 DNA polymerase III su 98.0 6.2E-05 1.3E-09 63.3 10.0 128 2-153 101-238 (491)
91 PRK14953 DNA polymerase III su 98.0 0.0001 2.2E-09 62.2 11.2 116 14-153 120-241 (486)
92 PRK14970 DNA polymerase III su 98.0 0.00011 2.4E-09 59.7 11.0 128 3-154 94-231 (367)
93 PRK08451 DNA polymerase III su 98.0 7.8E-05 1.7E-09 63.3 10.0 115 15-153 119-239 (535)
94 PRK14963 DNA polymerase III su 98.0 0.00018 3.9E-09 60.9 12.1 117 13-154 116-238 (504)
95 COG1474 CDC6 Cdc6-related prot 97.9 0.00027 5.8E-09 57.6 12.5 129 12-156 122-265 (366)
96 PRK07133 DNA polymerase III su 97.9 0.00014 3E-09 63.7 11.3 127 2-152 103-239 (725)
97 PRK04195 replication factor C 97.9 0.00011 2.3E-09 62.0 10.0 118 13-153 98-222 (482)
98 PRK08691 DNA polymerase III su 97.9 9.9E-05 2.1E-09 64.2 9.6 130 2-155 104-243 (709)
99 PRK09111 DNA polymerase III su 97.9 0.00023 5E-09 61.4 11.4 129 2-154 117-255 (598)
100 PRK07764 DNA polymerase III su 97.9 0.00015 3.2E-09 64.6 10.5 102 12-133 119-226 (824)
101 PRK14969 DNA polymerase III su 97.8 0.00028 6.1E-09 60.1 11.6 129 2-154 104-242 (527)
102 TIGR02030 BchI-ChlI magnesium 97.8 0.00034 7.4E-09 56.3 11.4 128 14-157 132-310 (337)
103 COG2256 MGS1 ATPase related to 97.8 0.00014 3.1E-09 59.1 8.7 138 2-160 89-242 (436)
104 PRK13407 bchI magnesium chelat 97.8 0.00047 1E-08 55.4 11.5 123 15-155 130-305 (334)
105 PRK14949 DNA polymerase III su 97.8 0.0003 6.6E-09 62.7 11.1 100 14-133 120-225 (944)
106 PRK04132 replication factor C 97.8 0.0004 8.7E-09 61.9 12.0 86 15-119 632-723 (846)
107 PRK00440 rfc replication facto 97.8 0.00019 4.2E-09 56.7 9.2 118 14-156 103-226 (319)
108 PRK09087 hypothetical protein; 97.8 0.0001 2.2E-09 56.1 7.3 123 15-156 89-222 (226)
109 PRK14965 DNA polymerase III su 97.8 0.00018 3.8E-09 61.9 9.4 127 2-152 104-240 (576)
110 PRK06620 hypothetical protein; 97.8 7.6E-05 1.7E-09 56.3 6.2 118 14-153 86-213 (214)
111 KOG1514 Origin recognition com 97.8 0.00031 6.7E-09 60.7 10.4 134 13-160 508-659 (767)
112 PRK06647 DNA polymerase III su 97.8 0.00039 8.4E-09 59.7 11.1 117 13-153 119-241 (563)
113 PRK05896 DNA polymerase III su 97.7 0.00017 3.8E-09 61.9 8.7 127 2-152 104-240 (605)
114 PRK08903 DnaA regulatory inact 97.7 0.00023 5E-09 53.9 8.6 124 13-154 90-224 (227)
115 PF00308 Bac_DnaA: Bacterial d 97.7 3.4E-05 7.3E-10 58.5 3.9 107 13-134 97-214 (219)
116 PF05621 TniB: Bacterial TniB 97.7 0.00021 4.4E-09 56.4 7.8 135 4-151 136-284 (302)
117 CHL00081 chlI Mg-protoporyphyr 97.7 0.00074 1.6E-08 54.6 11.0 128 14-157 145-323 (350)
118 PRK14959 DNA polymerase III su 97.7 0.00015 3.3E-09 62.5 7.3 117 13-153 119-241 (624)
119 COG0593 DnaA ATPase involved i 97.7 0.00036 7.8E-09 57.3 9.1 132 13-160 175-317 (408)
120 smart00350 MCM minichromosome 97.7 0.0014 3E-08 55.7 12.9 128 14-157 301-505 (509)
121 CHL00195 ycf46 Ycf46; Provisio 97.7 0.00063 1.4E-08 57.4 10.6 119 14-154 82-206 (489)
122 PRK14957 DNA polymerase III su 97.6 0.00058 1.2E-08 58.3 10.3 117 14-154 120-242 (546)
123 PRK06964 DNA polymerase III su 97.6 0.00035 7.5E-09 56.4 8.4 71 14-103 133-203 (342)
124 TIGR02639 ClpA ATP-dependent C 97.6 0.00063 1.4E-08 60.2 10.6 118 5-138 545-713 (731)
125 PRK05707 DNA polymerase III su 97.6 0.00023 5E-09 57.1 7.3 74 12-104 105-178 (328)
126 PRK06305 DNA polymerase III su 97.6 0.00086 1.9E-08 56.1 10.8 118 12-153 120-243 (451)
127 PLN03025 replication factor C 97.6 0.00041 8.9E-09 55.4 8.3 114 13-151 99-218 (319)
128 PRK05342 clpX ATP-dependent pr 97.6 0.00063 1.4E-08 56.2 9.5 138 11-150 171-399 (412)
129 TIGR00382 clpX endopeptidase C 97.6 0.00044 9.5E-09 57.1 8.4 127 11-139 179-387 (413)
130 PRK13341 recombination factor 97.6 0.0011 2.4E-08 58.5 11.2 122 13-156 109-247 (725)
131 PRK11034 clpA ATP-dependent Cl 97.6 0.00053 1.2E-08 60.7 9.2 116 7-138 551-717 (758)
132 PRK14950 DNA polymerase III su 97.5 0.0017 3.6E-08 56.1 11.4 116 14-153 121-242 (585)
133 PHA02544 44 clamp loader, smal 97.4 0.00033 7.2E-09 55.5 6.0 72 13-102 100-171 (316)
134 TIGR02031 BchD-ChlD magnesium 97.4 0.0012 2.5E-08 57.1 9.2 127 15-157 86-259 (589)
135 PRK14952 DNA polymerase III su 97.4 0.0016 3.5E-08 56.1 9.9 117 14-153 119-241 (584)
136 TIGR02640 gas_vesic_GvpN gas v 97.4 0.0023 5E-08 49.7 9.9 123 14-156 106-257 (262)
137 PRK09112 DNA polymerase III su 97.4 0.0015 3.2E-08 53.0 8.8 89 12-119 140-232 (351)
138 TIGR02903 spore_lon_C ATP-depe 97.3 0.004 8.7E-08 54.1 11.8 93 60-157 324-431 (615)
139 KOG2004 Mitochondrial ATP-depe 97.3 0.00063 1.4E-08 59.1 6.7 84 8-105 501-597 (906)
140 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0025 5.4E-08 57.4 10.6 117 7-139 661-828 (852)
141 PRK14948 DNA polymerase III su 97.3 0.0037 7.9E-08 54.4 11.3 110 2-131 106-225 (620)
142 PRK11331 5-methylcytosine-spec 97.3 0.0019 4.2E-08 53.8 8.7 71 4-90 261-357 (459)
143 PRK07471 DNA polymerase III su 97.2 0.0023 5.1E-08 52.1 8.8 90 11-119 139-230 (365)
144 PF05673 DUF815: Protein of un 97.2 0.0081 1.8E-07 46.2 11.1 91 2-105 94-208 (249)
145 PRK14955 DNA polymerase III su 97.2 0.0011 2.3E-08 54.7 6.7 120 14-153 128-254 (397)
146 COG0466 Lon ATP-dependent Lon 97.2 0.002 4.3E-08 56.0 8.4 135 7-155 412-583 (782)
147 COG2255 RuvB Holliday junction 97.2 0.0065 1.4E-07 47.7 10.3 126 14-156 104-251 (332)
148 COG1220 HslU ATP-dependent pro 97.2 0.004 8.7E-08 50.0 9.2 91 5-101 244-346 (444)
149 PRK08769 DNA polymerase III su 97.2 0.0018 3.9E-08 51.8 7.3 90 14-122 114-203 (319)
150 PRK05201 hslU ATP-dependent pr 97.2 0.0011 2.3E-08 54.8 6.1 85 13-101 249-345 (443)
151 PRK14971 DNA polymerase III su 97.2 0.0056 1.2E-07 53.2 10.7 101 14-134 122-228 (614)
152 cd00009 AAA The AAA+ (ATPases 97.2 0.0018 4E-08 44.2 6.5 68 7-90 78-151 (151)
153 TIGR03345 VI_ClpV1 type VI sec 97.2 0.0042 9E-08 55.9 10.2 116 6-138 661-832 (852)
154 COG0714 MoxR-like ATPases [Gen 97.1 0.0016 3.4E-08 52.2 6.8 71 15-101 114-200 (329)
155 TIGR00764 lon_rel lon-related 97.1 0.0018 3.9E-08 56.1 7.3 97 59-157 268-392 (608)
156 PRK07993 DNA polymerase III su 97.1 0.0024 5.2E-08 51.4 7.5 76 9-103 104-179 (334)
157 TIGR02442 Cob-chelat-sub cobal 97.1 0.0048 1E-07 53.8 9.8 127 15-157 128-305 (633)
158 COG2812 DnaX DNA polymerase II 97.1 0.0086 1.9E-07 50.8 10.9 103 13-135 119-227 (515)
159 KOG2028 ATPase related to the 97.1 0.0053 1.2E-07 49.9 9.1 135 2-157 206-369 (554)
160 PRK14954 DNA polymerase III su 97.1 0.0082 1.8E-07 52.2 10.9 120 14-153 128-254 (620)
161 PF05496 RuvB_N: Holliday junc 97.1 0.0021 4.6E-08 48.8 6.5 102 13-131 101-224 (233)
162 CHL00095 clpC Clp protease ATP 97.0 0.0091 2E-07 53.6 11.2 118 5-138 603-783 (821)
163 PRK06871 DNA polymerase III su 97.0 0.0072 1.6E-07 48.5 9.4 73 12-103 106-178 (325)
164 COG1224 TIP49 DNA helicase TIP 96.9 0.01 2.2E-07 48.1 9.5 126 14-159 292-435 (450)
165 KOG0741 AAA+-type ATPase [Post 96.9 0.0099 2.1E-07 50.4 9.7 94 2-101 587-683 (744)
166 PRK06090 DNA polymerase III su 96.9 0.0038 8.3E-08 49.9 6.8 71 13-102 108-178 (319)
167 TIGR00390 hslU ATP-dependent p 96.8 0.0052 1.1E-07 50.8 7.4 85 13-101 247-343 (441)
168 TIGR01650 PD_CobS cobaltochela 96.8 0.0067 1.4E-07 48.6 7.7 112 8-133 130-281 (327)
169 KOG2680 DNA helicase TIP49, TB 96.8 0.024 5.1E-07 45.1 10.5 89 69-160 339-433 (454)
170 smart00382 AAA ATPases associa 96.8 0.0063 1.4E-07 41.0 6.4 80 2-91 67-147 (148)
171 PRK07276 DNA polymerase III su 96.8 0.016 3.4E-07 45.8 9.3 94 14-129 105-198 (290)
172 PRK09862 putative ATP-dependen 96.7 0.051 1.1E-06 46.2 12.5 125 14-154 295-490 (506)
173 PRK08058 DNA polymerase III su 96.6 0.014 3.1E-07 46.8 8.4 70 14-102 111-180 (329)
174 COG0542 clpA ATP-binding subun 96.5 0.0082 1.8E-07 53.1 7.0 88 2-101 251-343 (786)
175 PRK05564 DNA polymerase III su 96.5 0.012 2.5E-07 46.9 7.3 88 13-119 93-182 (313)
176 PRK07399 DNA polymerase III su 96.4 0.038 8.3E-07 44.2 9.7 97 13-130 124-223 (314)
177 PF01637 Arch_ATPase: Archaeal 96.3 0.0048 1E-07 46.0 3.9 92 2-105 106-205 (234)
178 COG0542 clpA ATP-binding subun 96.3 0.028 6.1E-07 49.8 8.7 116 7-138 587-756 (786)
179 TIGR00368 Mg chelatase-related 96.2 0.14 3E-06 43.6 12.4 37 118-154 461-497 (499)
180 PRK13531 regulatory ATPase Rav 96.2 0.045 9.8E-07 46.2 9.3 125 15-159 109-286 (498)
181 COG3267 ExeA Type II secretory 96.2 0.1 2.2E-06 40.4 10.2 130 5-150 122-267 (269)
182 PRK10865 protein disaggregatio 96.1 0.051 1.1E-06 49.2 9.8 80 10-105 667-780 (857)
183 KOG0989 Replication factor C, 96.0 0.025 5.4E-07 44.9 6.4 87 15-119 131-222 (346)
184 PRK06581 DNA polymerase III su 96.0 0.048 1E-06 42.1 7.8 76 12-106 88-163 (263)
185 PF13177 DNA_pol3_delta2: DNA 95.9 0.015 3.3E-07 41.9 4.7 52 13-82 102-153 (162)
186 COG1067 LonB Predicted ATP-dep 95.9 0.014 3E-07 50.9 5.0 87 71-159 293-402 (647)
187 COG0470 HolB ATPase involved i 95.7 0.042 9.1E-07 43.3 6.6 70 13-101 109-178 (325)
188 KOG2227 Pre-initiation complex 95.6 0.072 1.6E-06 44.6 7.8 133 14-160 257-419 (529)
189 PF05729 NACHT: NACHT domain 95.6 0.06 1.3E-06 37.8 6.7 87 8-105 76-164 (166)
190 KOG1942 DNA helicase, TBP-inte 95.6 0.14 3.1E-06 40.7 8.9 125 13-157 296-439 (456)
191 PHA02244 ATPase-like protein 95.5 0.054 1.2E-06 44.3 6.8 73 13-100 180-269 (383)
192 PRK07132 DNA polymerase III su 95.5 0.11 2.4E-06 41.2 8.5 71 13-102 90-160 (299)
193 PF07728 AAA_5: AAA domain (dy 95.5 0.013 2.7E-07 40.7 2.7 54 13-82 65-139 (139)
194 PF07693 KAP_NTPase: KAP famil 95.4 0.078 1.7E-06 42.0 7.2 78 12-104 171-263 (325)
195 PRK13406 bchD magnesium chelat 95.3 0.19 4.2E-06 43.5 9.7 128 14-157 94-251 (584)
196 PTZ00111 DNA replication licen 95.3 0.16 3.5E-06 45.9 9.4 38 120-157 768-805 (915)
197 PRK05917 DNA polymerase III su 95.2 0.26 5.7E-06 38.9 9.6 59 14-91 96-154 (290)
198 PF05707 Zot: Zonular occluden 95.0 0.03 6.5E-07 41.4 3.6 68 13-91 79-146 (193)
199 PF07724 AAA_2: AAA domain (Cd 95.0 0.039 8.5E-07 40.2 4.1 56 15-73 70-134 (171)
200 COG2607 Predicted ATPase (AAA+ 95.0 0.34 7.4E-06 37.4 9.2 89 4-105 129-240 (287)
201 PRK05818 DNA polymerase III su 94.8 0.24 5.1E-06 38.6 8.1 59 14-91 89-147 (261)
202 PRK08699 DNA polymerase III su 94.6 0.061 1.3E-06 43.2 4.6 82 2-102 98-183 (325)
203 COG1239 ChlI Mg-chelatase subu 94.5 0.65 1.4E-05 38.5 10.2 80 9-105 141-233 (423)
204 PRK14700 recombination factor 94.5 0.24 5.2E-06 39.3 7.5 99 57-159 6-118 (300)
205 PF05872 DUF853: Bacterial pro 94.1 0.081 1.8E-06 44.2 4.4 73 1-86 238-315 (502)
206 PRK08485 DNA polymerase III su 94.1 0.39 8.5E-06 35.9 7.6 83 2-102 42-137 (206)
207 PF14516 AAA_35: AAA-like doma 93.9 0.64 1.4E-05 37.4 9.2 101 12-120 126-232 (331)
208 PRK13765 ATP-dependent proteas 93.9 0.21 4.7E-06 43.7 6.9 95 59-155 277-399 (637)
209 PF00493 MCM: MCM2/3/5 family 93.9 0.13 2.9E-06 41.3 5.2 127 14-156 122-326 (331)
210 PF12846 AAA_10: AAA-like doma 93.5 0.066 1.4E-06 41.5 2.9 71 12-97 219-294 (304)
211 KOG1969 DNA replication checkp 93.0 0.8 1.7E-05 40.6 8.7 104 60-166 439-547 (877)
212 TIGR00602 rad24 checkpoint pro 92.0 1.5 3.3E-05 38.5 9.3 107 13-138 195-330 (637)
213 TIGR01128 holA DNA polymerase 91.6 5.3 0.00012 31.1 11.5 123 14-156 47-178 (302)
214 COG1219 ClpX ATP-dependent pro 91.5 0.3 6.5E-06 39.3 4.1 42 13-54 162-203 (408)
215 PRK05574 holA DNA polymerase I 91.1 6.5 0.00014 31.2 12.3 126 14-157 77-214 (340)
216 PRK10365 transcriptional regul 90.8 0.92 2E-05 37.5 6.6 121 13-153 233-386 (441)
217 PF06068 TIP49: TIP49 C-termin 90.5 0.61 1.3E-05 38.2 5.1 72 14-105 279-362 (398)
218 PF13401 AAA_22: AAA domain; P 89.9 0.81 1.7E-05 30.9 4.7 49 3-66 77-125 (131)
219 PRK11361 acetoacetate metaboli 89.5 1.3 2.9E-05 36.7 6.6 120 14-153 238-390 (457)
220 PF00931 NB-ARC: NB-ARC domain 89.5 0.99 2.1E-05 34.9 5.5 100 5-128 94-202 (287)
221 TIGR02974 phageshock_pspF psp 89.0 1.1 2.4E-05 36.0 5.6 14 13-26 93-106 (329)
222 TIGR01817 nifA Nif-specific re 88.3 2.1 4.6E-05 36.6 7.1 117 14-150 291-439 (534)
223 PRK11388 DNA-binding transcrip 87.9 2.7 6E-05 36.8 7.7 121 14-154 417-569 (638)
224 KOG2228 Origin recognition com 87.9 1.4 3E-05 35.9 5.2 76 14-104 138-219 (408)
225 cd01120 RecA-like_NTPases RecA 87.7 2.2 4.8E-05 29.4 5.9 64 5-72 77-140 (165)
226 PRK04841 transcriptional regul 87.7 3.8 8.2E-05 37.0 8.7 94 12-122 120-220 (903)
227 KOG1051 Chaperone HSP104 and r 86.7 1.6 3.4E-05 39.8 5.5 51 4-68 651-710 (898)
228 TIGR02237 recomb_radB DNA repa 86.7 0.99 2.1E-05 33.4 3.7 68 3-73 87-154 (209)
229 KOG0478 DNA replication licens 86.5 7.4 0.00016 34.6 9.2 36 120-155 688-723 (804)
230 KOG1968 Replication factor C, 86.3 3.4 7.4E-05 37.7 7.4 99 15-135 430-535 (871)
231 PHA00012 I assembly protein 85.9 0.59 1.3E-05 37.7 2.2 80 12-100 80-164 (361)
232 PRK07452 DNA polymerase III su 85.8 12 0.00025 29.8 9.7 123 14-155 62-198 (326)
233 KOG0745 Putative ATP-dependent 84.6 1.8 3.8E-05 36.4 4.4 79 13-93 291-388 (564)
234 PF13304 AAA_21: AAA domain; P 84.4 3 6.6E-05 30.6 5.5 45 15-73 259-303 (303)
235 PRK15115 response regulator Gl 84.0 6.6 0.00014 32.6 7.8 120 14-153 229-381 (444)
236 PRK11608 pspF phage shock prot 83.4 5.8 0.00013 31.8 7.0 13 14-26 101-113 (326)
237 PF12775 AAA_7: P-loop contain 83.2 1.5 3.2E-05 34.3 3.4 85 13-105 100-194 (272)
238 TIGR02915 PEP_resp_reg putativ 82.9 3.6 7.9E-05 34.1 5.8 13 14-26 234-246 (445)
239 TIGR01818 ntrC nitrogen regula 82.5 7.8 0.00017 32.3 7.7 119 14-154 229-382 (463)
240 PF07726 AAA_3: ATPase family 82.4 1.5 3.2E-05 30.6 2.7 52 15-82 64-129 (131)
241 PF02969 TAF: TATA box binding 82.3 3.6 7.9E-05 25.1 4.2 31 124-154 36-66 (66)
242 PLN03210 Resistant to P. syrin 82.3 13 0.00028 35.1 9.6 71 11-104 294-364 (1153)
243 KOG2035 Replication factor C, 82.0 3.5 7.5E-05 32.8 4.9 87 14-119 128-220 (351)
244 cd01121 Sms Sms (bacterial rad 81.2 10 0.00023 31.1 7.7 28 2-29 147-174 (372)
245 PF00808 CBFD_NFYB_HMF: Histon 80.5 3.9 8.5E-05 24.4 3.9 30 124-153 36-65 (65)
246 COG1485 Predicted ATPase [Gene 80.3 1.9 4.1E-05 35.1 3.1 46 14-74 131-177 (367)
247 PF13173 AAA_14: AAA domain 80.1 4.4 9.5E-05 27.5 4.6 64 13-95 61-126 (128)
248 PRK05022 anaerobic nitric oxid 80.0 6 0.00013 33.8 6.2 18 121-138 405-422 (509)
249 smart00803 TAF TATA box bindin 79.5 4.2 9.1E-05 24.6 3.8 32 123-154 34-65 (65)
250 PRK13539 cytochrome c biogenes 78.8 8.2 0.00018 28.5 6.0 65 6-92 138-202 (207)
251 COG1136 SalX ABC-type antimicr 77.8 7.1 0.00015 29.8 5.4 65 5-89 152-216 (226)
252 PF03969 AFG1_ATPase: AFG1-lik 77.0 3.8 8.2E-05 33.5 4.0 46 14-74 128-174 (362)
253 smart00763 AAA_PrkA PrkA AAA d 76.9 9.8 0.00021 31.2 6.2 76 14-106 237-329 (361)
254 COG2909 MalT ATP-dependent tra 76.5 14 0.0003 33.7 7.4 109 3-128 118-235 (894)
255 PF09820 AAA-ATPase_like: Pred 76.1 4.3 9.4E-05 31.9 4.0 19 11-29 141-159 (284)
256 COG1066 Sms Predicted ATP-depe 75.9 22 0.00048 29.8 8.0 84 2-88 157-241 (456)
257 PRK15429 formate hydrogenlyase 74.1 15 0.00033 32.6 7.3 107 13-136 470-609 (686)
258 PF14532 Sigma54_activ_2: Sigm 73.9 5 0.00011 27.6 3.5 14 13-26 69-82 (138)
259 PF09336 Vps4_C: Vps4 C termin 73.9 2.3 4.9E-05 25.5 1.5 18 143-160 29-46 (62)
260 COG1121 ZnuC ABC-type Mn/Zn tr 73.8 11 0.00023 29.4 5.5 56 4-73 148-203 (254)
261 COG4619 ABC-type uncharacteriz 73.8 8 0.00017 28.6 4.5 64 11-93 149-212 (223)
262 PF04465 DUF499: Protein of un 73.4 9.2 0.0002 35.6 5.8 23 2-28 92-114 (1035)
263 PF10236 DAP3: Mitochondrial r 72.3 34 0.00073 27.3 8.2 103 4-106 144-279 (309)
264 COG1131 CcmA ABC-type multidru 72.0 9.8 0.00021 30.1 5.1 56 6-74 147-202 (293)
265 PRK11823 DNA repair protein Ra 71.9 24 0.00052 29.7 7.6 28 2-29 145-172 (446)
266 cd00076 H4 Histone H4, one of 71.9 10 0.00023 24.3 4.3 37 121-157 43-79 (85)
267 cd01122 GP4d_helicase GP4d_hel 71.8 4.8 0.0001 31.0 3.3 57 5-66 132-188 (271)
268 PRK10923 glnG nitrogen regulat 71.6 18 0.00039 30.2 6.9 30 121-153 356-385 (469)
269 TIGR02211 LolD_lipo_ex lipopro 71.6 14 0.0003 27.4 5.7 55 5-72 151-205 (221)
270 cd01124 KaiC KaiC is a circadi 71.2 13 0.00028 26.6 5.3 57 3-70 85-141 (187)
271 cd07981 TAF12 TATA Binding Pro 71.1 12 0.00027 22.9 4.4 35 123-157 34-68 (72)
272 PRK08116 hypothetical protein; 71.1 3.6 7.8E-05 32.1 2.4 66 13-93 178-251 (268)
273 TIGR00929 VirB4_CagE type IV s 71.0 6.9 0.00015 35.0 4.5 66 12-92 628-698 (785)
274 PF13335 Mg_chelatase_2: Magne 70.6 15 0.00033 23.9 5.0 39 116-154 56-94 (96)
275 TIGR02329 propionate_PrpR prop 70.3 16 0.00035 31.4 6.4 31 121-151 435-465 (526)
276 PTZ00015 histone H4; Provision 69.6 12 0.00026 24.9 4.3 38 121-158 60-97 (102)
277 COG0497 RecN ATPase involved i 69.4 5.5 0.00012 34.4 3.3 42 13-70 454-495 (557)
278 cd03216 ABC_Carb_Monos_I This 69.1 11 0.00024 26.8 4.4 55 5-73 92-146 (163)
279 COG4598 HisP ABC-type histidin 68.6 11 0.00023 28.3 4.2 49 4-65 161-209 (256)
280 PLN00035 histone H4; Provision 68.4 13 0.00028 24.8 4.3 36 123-158 61-96 (103)
281 cd03255 ABC_MJ0796_Lo1CDE_FtsE 68.0 12 0.00026 27.7 4.6 55 5-72 150-204 (218)
282 TIGR01166 cbiO cobalt transpor 67.9 26 0.00055 25.3 6.3 52 5-70 137-188 (190)
283 PRK13541 cytochrome c biogenes 67.8 28 0.00061 25.3 6.5 56 6-75 134-189 (195)
284 cd03227 ABC_Class2 ABC-type Cl 67.7 13 0.00028 26.3 4.6 47 13-73 99-145 (162)
285 cd01394 radB RadB. The archaea 67.5 10 0.00022 28.1 4.2 79 13-92 103-188 (218)
286 PRK13543 cytochrome c biogenes 67.4 19 0.00041 26.7 5.6 56 5-74 147-202 (214)
287 KOG0990 Replication factor C, 66.9 44 0.00095 27.2 7.6 70 13-101 131-200 (360)
288 COG1241 MCM2 Predicted ATPase 66.8 22 0.00047 31.7 6.5 43 115-157 551-593 (682)
289 PRK13540 cytochrome c biogenes 66.6 27 0.00059 25.5 6.3 56 5-74 137-192 (200)
290 COG1116 TauB ABC-type nitrate/ 66.4 22 0.00048 27.5 5.8 70 5-91 140-220 (248)
291 PRK11300 livG leucine/isoleuci 66.0 13 0.00029 28.2 4.6 56 5-73 163-218 (255)
292 cd03267 ABC_NatA_like Similar 66.0 16 0.00036 27.5 5.1 55 5-72 163-217 (236)
293 PRK11629 lolD lipoprotein tran 65.5 15 0.00032 27.6 4.7 56 5-73 155-210 (233)
294 PF13481 AAA_25: AAA domain; P 65.3 14 0.00031 26.6 4.5 27 2-28 129-156 (193)
295 TIGR03864 PQQ_ABC_ATP ABC tran 65.2 20 0.00043 27.0 5.4 56 5-73 142-197 (236)
296 PF10923 DUF2791: P-loop Domai 65.2 79 0.0017 26.5 9.2 38 11-54 237-274 (416)
297 cd01393 recA_like RecA is a b 65.0 6.6 0.00014 29.2 2.7 59 11-70 112-170 (226)
298 PRK13538 cytochrome c biogenes 64.8 25 0.00055 25.8 5.8 55 6-74 140-194 (204)
299 PRK09183 transposase/IS protei 64.6 13 0.00028 28.8 4.3 14 12-25 163-176 (259)
300 cd03256 ABC_PhnC_transporter A 64.3 15 0.00032 27.6 4.6 55 6-73 155-209 (241)
301 PRK09361 radB DNA repair and r 64.2 8.8 0.00019 28.7 3.3 85 12-97 106-197 (225)
302 cd03298 ABC_ThiQ_thiamine_tran 64.0 12 0.00027 27.5 4.0 56 5-73 138-193 (211)
303 cd03301 ABC_MalK_N The N-termi 64.0 13 0.00029 27.3 4.2 55 5-72 140-194 (213)
304 cd03283 ABC_MutS-like MutS-lik 63.8 19 0.00042 26.6 5.0 58 3-73 95-152 (199)
305 cd03231 ABC_CcmA_heme_exporter 63.4 30 0.00065 25.3 6.0 56 5-74 135-190 (201)
306 COG1221 PspF Transcriptional r 63.1 52 0.0011 27.4 7.7 109 14-138 174-311 (403)
307 cd03287 ABC_MSH3_euk MutS3 hom 62.4 20 0.00044 27.1 4.9 50 12-73 109-158 (222)
308 TIGR02746 TraC-F-type type-IV 62.4 24 0.00052 31.8 6.1 76 12-101 636-716 (797)
309 COG1119 ModF ABC-type molybden 62.0 42 0.00091 26.1 6.5 63 4-78 180-242 (257)
310 COG2036 HHT1 Histones H3 and H 61.7 23 0.00049 23.1 4.4 37 123-159 51-87 (91)
311 PRK10575 iron-hydroxamate tran 61.7 18 0.0004 27.8 4.7 55 5-72 157-211 (265)
312 COG4555 NatA ABC-type Na+ tran 61.5 28 0.00061 26.5 5.3 53 6-72 144-196 (245)
313 cd03293 ABC_NrtD_SsuB_transpor 61.2 18 0.00039 26.8 4.5 55 5-72 141-195 (220)
314 cd03240 ABC_Rad50 The catalyti 61.1 13 0.00029 27.5 3.7 18 9-26 135-152 (204)
315 cd03238 ABC_UvrA The excision 61.0 31 0.00067 25.1 5.5 64 5-89 97-162 (176)
316 PRK13645 cbiO cobalt transport 60.9 16 0.00034 28.6 4.3 55 5-72 160-214 (289)
317 PRK13652 cbiO cobalt transport 60.9 19 0.00042 27.9 4.8 57 4-73 146-202 (277)
318 cd03259 ABC_Carb_Solutes_like 60.9 15 0.00033 27.1 4.0 54 6-72 141-194 (213)
319 cd03252 ABCC_Hemolysin The ABC 60.9 32 0.0007 25.7 5.9 53 5-72 148-200 (237)
320 PRK10263 DNA translocase FtsK; 60.9 10 0.00022 36.1 3.6 74 15-101 1142-1217(1355)
321 cd03257 ABC_NikE_OppD_transpor 60.6 18 0.00039 26.9 4.4 55 5-72 155-209 (228)
322 TIGR01184 ntrCD nitrate transp 60.6 18 0.0004 27.1 4.5 55 5-72 124-178 (230)
323 PRK06526 transposase; Provisio 60.3 10 0.00022 29.4 3.0 15 12-26 158-172 (254)
324 cd03228 ABCC_MRP_Like The MRP 60.2 30 0.00064 24.6 5.3 53 6-73 107-159 (171)
325 KOG0732 AAA+-type ATPase conta 60.2 6.3 0.00014 36.6 2.1 27 2-28 642-668 (1080)
326 cd03286 ABC_MSH6_euk MutS6 hom 60.2 15 0.00033 27.7 3.9 63 3-79 101-163 (218)
327 cd03296 ABC_CysA_sulfate_impor 59.9 18 0.00039 27.3 4.3 54 6-72 147-200 (239)
328 TIGR02770 nickel_nikD nickel i 59.4 19 0.0004 27.0 4.3 55 5-72 135-189 (230)
329 TIGR02315 ABC_phnC phosphonate 59.3 22 0.00048 26.8 4.7 55 5-72 155-209 (243)
330 PRK10418 nikD nickel transport 59.2 18 0.00039 27.6 4.3 55 5-72 150-204 (254)
331 cd03233 ABC_PDR_domain1 The pl 59.0 30 0.00064 25.4 5.3 54 5-70 128-181 (202)
332 TIGR00960 3a0501s02 Type II (G 58.9 25 0.00054 26.0 4.9 55 5-73 148-202 (216)
333 cd03258 ABC_MetN_methionine_tr 58.9 18 0.0004 27.0 4.2 55 5-72 150-204 (233)
334 PRK09984 phosphonate/organopho 58.8 20 0.00043 27.5 4.5 56 5-73 162-217 (262)
335 TIGR03410 urea_trans_UrtE urea 58.7 23 0.00049 26.5 4.7 56 5-73 141-196 (230)
336 COG1122 CbiO ABC-type cobalt t 58.6 22 0.00047 27.3 4.6 55 6-73 149-203 (235)
337 cd03297 ABC_ModC_molybdenum_tr 58.5 19 0.00042 26.5 4.2 56 5-73 141-196 (214)
338 cd03265 ABC_DrrA DrrA is the A 58.3 24 0.00052 26.2 4.7 56 5-73 141-196 (220)
339 cd03261 ABC_Org_Solvent_Resist 58.2 20 0.00043 26.9 4.3 55 5-72 146-200 (235)
340 KOG2304 3-hydroxyacyl-CoA dehy 58.2 64 0.0014 25.1 6.8 108 43-156 110-235 (298)
341 PRK13537 nodulation ABC transp 58.1 27 0.0006 27.6 5.2 55 5-73 148-202 (306)
342 cd03226 ABC_cobalt_CbiO_domain 58.1 23 0.00051 25.9 4.6 54 5-72 136-189 (205)
343 TIGR01189 ccmA heme ABC export 58.1 52 0.0011 23.9 6.5 54 6-73 138-191 (198)
344 PRK10938 putative molybdenum t 57.9 33 0.00071 29.0 6.0 57 5-74 411-467 (490)
345 PRK13853 type IV secretion sys 57.8 8.5 0.00018 34.8 2.5 67 12-93 626-697 (789)
346 cd03214 ABC_Iron-Siderophores_ 57.6 26 0.00057 25.1 4.7 55 6-73 108-162 (180)
347 cd03292 ABC_FtsE_transporter F 57.6 25 0.00053 25.9 4.7 55 5-73 146-200 (214)
348 PRK11831 putative ABC transpor 57.5 21 0.00046 27.5 4.4 56 5-73 153-208 (269)
349 cd03247 ABCC_cytochrome_bd The 57.4 33 0.00072 24.5 5.2 54 5-73 108-161 (178)
350 PRK10253 iron-enterobactin tra 57.3 24 0.00052 27.1 4.7 56 5-73 153-208 (265)
351 cd03225 ABC_cobalt_CbiO_domain 57.3 24 0.00052 25.9 4.6 55 5-73 144-198 (211)
352 PRK11248 tauB taurine transpor 57.3 22 0.00047 27.3 4.4 55 5-72 138-192 (255)
353 PRK09544 znuC high-affinity zi 57.2 24 0.00051 27.1 4.6 56 5-73 130-185 (251)
354 PF00488 MutS_V: MutS domain V 57.0 33 0.00071 26.2 5.3 57 2-72 113-169 (235)
355 COG1127 Ttg2A ABC-type transpo 56.9 25 0.00055 27.3 4.6 57 3-72 153-209 (263)
356 PRK13635 cbiO cobalt transport 56.8 26 0.00055 27.3 4.8 55 5-72 150-204 (279)
357 PRK10247 putative ABC transpor 56.5 31 0.00067 25.8 5.1 64 5-88 147-210 (225)
358 cd03215 ABC_Carb_Monos_II This 56.5 22 0.00047 25.6 4.1 54 6-73 115-168 (182)
359 KOG1051 Chaperone HSP104 and r 56.4 16 0.00034 33.6 3.9 87 2-101 268-360 (898)
360 cd03218 ABC_YhbG The ABC trans 56.4 26 0.00057 26.1 4.7 55 5-73 143-197 (232)
361 cd03262 ABC_HisP_GlnQ_permease 56.4 27 0.00059 25.6 4.7 54 6-73 146-199 (213)
362 cd03230 ABC_DR_subfamily_A Thi 56.3 31 0.00068 24.5 4.9 55 5-73 105-159 (173)
363 cd03295 ABC_OpuCA_Osmoprotecti 56.3 20 0.00044 27.0 4.1 55 5-72 145-199 (242)
364 PRK11153 metN DL-methionine tr 56.2 23 0.00049 28.6 4.5 55 5-72 150-204 (343)
365 cd03229 ABC_Class3 This class 56.1 23 0.0005 25.4 4.2 56 5-73 110-165 (178)
366 cd03235 ABC_Metallic_Cations A 56.1 30 0.00066 25.4 4.9 54 6-73 143-196 (213)
367 PRK13632 cbiO cobalt transport 56.0 34 0.00075 26.4 5.4 55 5-72 152-206 (271)
368 cd03268 ABC_BcrA_bacitracin_re 56.0 28 0.0006 25.5 4.7 54 6-73 137-190 (208)
369 TIGR03740 galliderm_ABC gallid 55.9 29 0.00062 25.8 4.8 55 5-73 134-188 (223)
370 PRK15112 antimicrobial peptide 55.9 23 0.0005 27.3 4.4 56 5-73 159-214 (267)
371 PRK11701 phnK phosphonate C-P 55.8 27 0.00058 26.7 4.7 56 5-73 161-216 (258)
372 TIGR02769 nickel_nikE nickel i 55.8 24 0.00051 27.2 4.4 56 5-73 160-215 (265)
373 cd03294 ABC_Pro_Gly_Bertaine T 55.1 25 0.00055 27.1 4.5 54 6-72 171-224 (269)
374 TIGR01277 thiQ thiamine ABC tr 55.0 26 0.00056 25.9 4.4 54 6-72 139-192 (213)
375 PRK10771 thiQ thiamine transpo 55.0 26 0.00057 26.2 4.5 55 6-73 140-194 (232)
376 TIGR03411 urea_trans_UrtD urea 54.9 30 0.00065 26.0 4.8 54 5-73 153-206 (242)
377 cd01123 Rad51_DMC1_radA Rad51_ 54.9 13 0.00028 27.8 2.8 63 8-71 109-172 (235)
378 cd00984 DnaB_C DnaB helicase C 54.8 18 0.00038 27.2 3.5 53 9-67 119-171 (242)
379 cd03232 ABC_PDR_domain2 The pl 54.6 55 0.0012 23.7 6.1 52 5-70 118-169 (192)
380 PF02463 SMC_N: RecF/RecN/SMC 54.6 22 0.00047 26.3 4.0 22 5-26 150-171 (220)
381 PRK09580 sufC cysteine desulfu 54.5 31 0.00067 26.0 4.9 55 5-73 155-209 (248)
382 PRK13648 cbiO cobalt transport 54.5 42 0.00092 25.8 5.7 56 5-73 152-207 (269)
383 PHA00350 putative assembly pro 54.0 4.8 0.0001 33.4 0.3 66 13-85 81-159 (399)
384 TIGR02323 CP_lyasePhnK phospho 54.0 26 0.00057 26.6 4.4 56 5-73 158-213 (253)
385 cd03246 ABCC_Protease_Secretio 53.8 36 0.00077 24.3 4.8 54 5-72 106-159 (173)
386 PF00125 Histone: Core histone 53.7 27 0.00058 21.2 3.7 31 124-154 43-73 (75)
387 PRK13646 cbiO cobalt transport 53.7 26 0.00057 27.3 4.4 56 5-73 155-210 (286)
388 PRK10419 nikE nickel transport 53.4 25 0.00055 27.1 4.3 56 5-73 161-216 (268)
389 COG1674 FtsK DNA segregation A 53.4 8.6 0.00019 35.1 1.8 78 11-101 637-715 (858)
390 cd01125 repA Hexameric Replica 53.4 23 0.00049 26.8 3.9 86 3-98 101-198 (239)
391 TIGR03005 ectoine_ehuA ectoine 53.3 30 0.00065 26.3 4.6 54 6-72 157-210 (252)
392 TIGR01188 drrA daunorubicin re 53.2 35 0.00076 26.8 5.1 55 5-73 134-188 (302)
393 PRK13637 cbiO cobalt transport 53.2 28 0.00061 27.2 4.5 55 5-72 154-208 (287)
394 cd03269 ABC_putative_ATPase Th 53.1 36 0.00077 25.0 4.9 54 5-72 138-191 (210)
395 PF13175 AAA_15: AAA ATPase do 53.0 26 0.00056 28.4 4.5 42 16-70 372-413 (415)
396 cd03253 ABCC_ATM1_transporter 53.0 44 0.00095 25.0 5.5 52 6-72 148-199 (236)
397 PRK11247 ssuB aliphatic sulfon 53.0 29 0.00062 26.8 4.5 55 5-72 143-197 (257)
398 TIGR02673 FtsE cell division A 53.0 33 0.00072 25.2 4.7 54 6-73 148-201 (214)
399 PRK11231 fecE iron-dicitrate t 52.9 26 0.00057 26.7 4.3 55 5-73 148-202 (255)
400 PRK13643 cbiO cobalt transport 52.9 29 0.00063 27.1 4.6 55 5-73 154-208 (288)
401 COG1106 Predicted ATPases [Gen 52.9 6.3 0.00014 32.4 0.8 51 15-78 272-322 (371)
402 cd03266 ABC_NatA_sodium_export 52.8 34 0.00074 25.2 4.8 55 5-73 146-200 (218)
403 cd03263 ABC_subfamily_A The AB 52.7 38 0.00083 25.0 5.0 54 5-73 143-196 (220)
404 TIGR02012 tigrfam_recA protein 52.7 31 0.00067 27.8 4.7 66 6-71 126-194 (321)
405 cd03264 ABC_drug_resistance_li 52.5 39 0.00085 24.8 5.0 54 5-73 140-193 (211)
406 TIGR02858 spore_III_AA stage I 52.5 35 0.00076 26.7 4.9 64 4-89 185-256 (270)
407 PRK13634 cbiO cobalt transport 52.3 29 0.00064 27.1 4.5 56 5-73 155-210 (290)
408 cd03244 ABCC_MRP_domain2 Domai 52.3 44 0.00096 24.7 5.3 54 5-73 149-202 (221)
409 PRK10619 histidine/lysine/argi 51.9 29 0.00062 26.5 4.3 55 5-73 162-216 (257)
410 cd03251 ABCC_MsbA MsbA is an e 51.9 49 0.0011 24.7 5.6 53 6-73 149-201 (234)
411 PRK13633 cobalt transporter AT 51.9 38 0.00083 26.3 5.1 55 6-73 155-209 (280)
412 TIGR03522 GldA_ABC_ATP gliding 51.3 43 0.00093 26.4 5.3 54 5-73 143-196 (301)
413 PF02269 TFIID-18kDa: Transcri 51.1 8 0.00017 25.2 1.0 49 112-160 23-71 (93)
414 PRK10584 putative ABC transpor 51.1 44 0.00096 24.8 5.2 54 6-72 157-210 (228)
415 PRK14250 phosphate ABC transpo 50.8 34 0.00073 25.9 4.5 55 6-73 142-196 (241)
416 COG1373 Predicted ATPase (AAA+ 50.8 77 0.0017 26.3 6.9 68 13-98 94-161 (398)
417 PRK13644 cbiO cobalt transport 50.7 40 0.00086 26.1 5.0 54 5-72 146-199 (274)
418 cd03219 ABC_Mj1267_LivG_branch 50.7 38 0.00082 25.3 4.8 55 5-73 153-207 (236)
419 PRK13636 cbiO cobalt transport 50.5 30 0.00065 27.0 4.3 56 5-73 151-206 (283)
420 PRK13640 cbiO cobalt transport 50.5 38 0.00082 26.4 4.8 55 5-72 153-207 (282)
421 PRK14243 phosphate transporter 50.4 36 0.00078 26.2 4.7 54 5-73 161-214 (264)
422 PRK14240 phosphate transporter 50.2 37 0.00081 25.7 4.7 54 5-73 156-209 (250)
423 PF07034 ORC3_N: Origin recogn 50.2 27 0.0006 28.0 4.1 74 13-103 199-278 (330)
424 PRK14253 phosphate ABC transpo 50.2 41 0.00089 25.4 4.9 54 5-73 155-208 (249)
425 PRK14269 phosphate ABC transpo 50.1 42 0.00091 25.4 5.0 54 5-73 152-205 (246)
426 PRK14260 phosphate ABC transpo 50.1 35 0.00076 26.1 4.6 54 5-73 160-213 (259)
427 TIGR03608 L_ocin_972_ABC putat 49.9 61 0.0013 23.6 5.7 52 5-70 144-195 (206)
428 PRK13898 type IV secretion sys 49.8 20 0.00044 32.4 3.6 69 11-94 640-713 (800)
429 PRK13649 cbiO cobalt transport 49.8 36 0.00077 26.4 4.6 54 5-72 155-208 (280)
430 cd03213 ABCG_EPDR ABCG transpo 49.6 76 0.0016 23.1 6.1 52 5-70 121-172 (194)
431 PRK11264 putative amino-acid A 49.6 39 0.00085 25.5 4.7 54 5-72 154-207 (250)
432 PRK13650 cbiO cobalt transport 49.6 36 0.00079 26.4 4.6 55 5-72 150-204 (279)
433 PRK14261 phosphate ABC transpo 49.3 39 0.00086 25.6 4.7 54 5-73 159-212 (253)
434 TIGR01978 sufC FeS assembly AT 49.3 38 0.00082 25.4 4.6 55 5-73 154-208 (243)
435 PF13654 AAA_32: AAA domain; P 49.2 36 0.00077 29.3 4.8 96 59-156 388-506 (509)
436 cd03224 ABC_TM1139_LivF_branch 49.0 38 0.00083 25.0 4.5 53 6-72 143-195 (222)
437 PRK13638 cbiO cobalt transport 49.0 40 0.00086 26.0 4.7 55 5-73 146-200 (271)
438 TIGR00634 recN DNA repair prot 49.0 5.8 0.00013 34.3 0.0 44 14-72 463-506 (563)
439 PRK15093 antimicrobial peptide 48.9 35 0.00076 27.3 4.5 55 5-72 168-222 (330)
440 cd03249 ABC_MTABC3_MDL1_MDL2 M 48.9 55 0.0012 24.5 5.4 52 6-72 150-201 (238)
441 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 48.7 44 0.00095 25.0 4.8 54 6-73 153-206 (224)
442 PRK10895 lipopolysaccharide AB 48.7 40 0.00087 25.3 4.7 55 5-73 147-201 (241)
443 PRK14259 phosphate ABC transpo 48.6 48 0.001 25.6 5.2 52 6-72 165-216 (269)
444 cd03281 ABC_MSH5_euk MutS5 hom 48.6 52 0.0011 24.6 5.2 56 11-76 106-161 (213)
445 PRK10908 cell division protein 48.5 44 0.00096 24.7 4.8 55 5-73 147-201 (222)
446 TIGR00968 3a0106s01 sulfate AB 48.5 32 0.0007 25.9 4.1 55 6-73 141-195 (237)
447 PRK13639 cbiO cobalt transport 48.5 44 0.00095 25.9 4.9 55 5-73 147-201 (275)
448 cd03260 ABC_PstB_phosphate_tra 48.4 51 0.0011 24.5 5.1 52 6-72 152-203 (227)
449 PRK13647 cbiO cobalt transport 48.3 43 0.00093 25.9 4.8 55 5-73 148-202 (274)
450 PRK10869 recombination and rep 48.3 9.7 0.00021 33.0 1.3 43 13-70 452-494 (553)
451 PRK13830 conjugal transfer pro 48.2 17 0.00036 33.1 2.8 66 12-92 651-721 (818)
452 PRK11614 livF leucine/isoleuci 48.1 41 0.00089 25.2 4.6 53 6-72 148-200 (237)
453 TIGR03873 F420-0_ABC_ATP propo 48.1 46 0.001 25.3 4.9 55 5-73 147-201 (256)
454 PRK15056 manganese/iron transp 48.0 48 0.001 25.6 5.1 54 5-72 152-205 (272)
455 TIGR00416 sms DNA repair prote 48.0 76 0.0017 26.8 6.5 26 3-28 160-185 (454)
456 TIGR02314 ABC_MetN D-methionin 47.9 37 0.00081 27.5 4.5 55 5-72 150-204 (343)
457 CHL00131 ycf16 sulfate ABC tra 47.9 50 0.0011 25.0 5.1 53 6-72 162-214 (252)
458 TIGR02142 modC_ABC molybdenum 47.8 37 0.0008 27.5 4.5 55 5-72 141-195 (354)
459 PRK13641 cbiO cobalt transport 47.8 46 0.00099 26.0 4.9 55 5-73 155-209 (287)
460 KOG0058 Peptide exporter, ABC 47.7 52 0.0011 29.5 5.5 46 6-64 615-660 (716)
461 cd03223 ABCD_peroxisomal_ALDP 47.6 98 0.0021 21.8 6.4 20 5-24 101-120 (166)
462 KOG0480 DNA replication licens 47.6 44 0.00094 29.8 5.0 42 117-158 604-645 (764)
463 PRK14266 phosphate ABC transpo 47.5 47 0.001 25.1 4.9 55 5-74 156-210 (250)
464 PRK14258 phosphate ABC transpo 47.4 34 0.00075 26.2 4.2 55 6-73 161-215 (261)
465 PRK14242 phosphate transporter 47.4 48 0.001 25.1 4.9 53 6-73 160-212 (253)
466 COG3196 Uncharacterized protei 47.3 65 0.0014 23.0 5.0 16 109-124 88-103 (183)
467 PRK14245 phosphate ABC transpo 47.3 49 0.0011 25.0 5.0 54 5-73 156-209 (250)
468 PRK09493 glnQ glutamine ABC tr 47.2 40 0.00086 25.4 4.4 55 5-73 146-200 (240)
469 cd03770 SR_TndX_transposase Se 47.1 40 0.00086 23.3 4.1 24 3-26 58-81 (140)
470 KOG2383 Predicted ATPase [Gene 47.1 37 0.00079 28.5 4.3 46 14-74 194-240 (467)
471 cd03369 ABCC_NFT1 Domain 2 of 46.8 68 0.0015 23.4 5.6 53 5-72 135-187 (207)
472 cd03237 ABC_RNaseL_inhibitor_d 46.8 39 0.00085 25.8 4.4 55 5-72 125-179 (246)
473 PRK13642 cbiO cobalt transport 46.8 46 0.00099 25.8 4.8 56 5-73 150-205 (277)
474 COG1120 FepC ABC-type cobalami 46.8 28 0.0006 27.2 3.5 85 4-104 147-236 (258)
475 cd03300 ABC_PotA_N PotA is an 46.7 31 0.00068 25.8 3.8 55 5-72 140-194 (232)
476 PRK14247 phosphate ABC transpo 46.6 57 0.0012 24.7 5.2 52 6-72 157-208 (250)
477 PRK14275 phosphate ABC transpo 46.6 50 0.0011 25.8 5.0 54 5-73 192-245 (286)
478 TIGR03269 met_CoM_red_A2 methy 46.6 37 0.0008 28.9 4.5 56 5-73 178-233 (520)
479 cd00983 recA RecA is a bacter 46.3 41 0.00088 27.2 4.5 66 7-72 127-195 (325)
480 PRK14255 phosphate ABC transpo 46.2 50 0.0011 25.0 4.8 54 5-73 158-211 (252)
481 PRK11022 dppD dipeptide transp 46.0 23 0.0005 28.3 3.1 55 5-72 163-217 (326)
482 PRK14268 phosphate ABC transpo 45.9 50 0.0011 25.2 4.9 54 5-73 164-217 (258)
483 PRK13891 conjugal transfer pro 45.9 33 0.00072 31.4 4.3 69 9-92 683-756 (852)
484 PRK14239 phosphate transporter 45.9 54 0.0012 24.8 5.0 52 6-72 159-210 (252)
485 COG4565 CitB Response regulato 45.8 29 0.00063 26.4 3.3 66 4-86 37-102 (224)
486 PRK14274 phosphate ABC transpo 45.8 54 0.0012 25.0 5.0 53 6-73 166-218 (259)
487 PF08423 Rad51: Rad51; InterP 45.8 17 0.00037 28.1 2.2 67 7-74 127-193 (256)
488 PRK13536 nodulation factor exp 45.7 51 0.0011 26.6 5.0 55 6-74 183-237 (340)
489 PRK14235 phosphate transporter 45.7 45 0.00098 25.6 4.6 54 5-73 173-226 (267)
490 PRK14236 phosphate transporter 45.6 53 0.0011 25.3 5.0 54 5-73 178-231 (272)
491 PRK15134 microcin C ABC transp 45.6 40 0.00087 28.8 4.6 55 5-72 166-220 (529)
492 cd03217 ABC_FeS_Assembly ABC-t 45.5 62 0.0014 23.6 5.1 54 5-72 114-167 (200)
493 cd03221 ABCF_EF-3 ABCF_EF-3 E 45.4 70 0.0015 22.1 5.2 50 6-72 81-130 (144)
494 cd03222 ABC_RNaseL_inhibitor T 45.4 54 0.0012 23.8 4.7 54 6-72 82-135 (177)
495 PRK14272 phosphate ABC transpo 45.4 58 0.0013 24.6 5.1 54 5-73 158-211 (252)
496 cd03299 ABC_ModC_like Archeal 44.9 39 0.00085 25.4 4.1 56 5-73 139-194 (235)
497 cd03248 ABCC_TAP TAP, the Tran 44.6 70 0.0015 23.7 5.4 52 6-72 161-212 (226)
498 PRK14256 phosphate ABC transpo 44.6 48 0.001 25.1 4.6 54 5-73 158-211 (252)
499 TIGR01288 nodI ATP-binding ABC 44.5 52 0.0011 25.9 4.9 55 5-73 145-199 (303)
500 COG2401 ABC-type ATPase fused 44.4 12 0.00026 31.7 1.1 51 10-73 522-572 (593)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-43 Score=274.99 Aligned_cols=160 Identities=58% Similarity=0.905 Sum_probs=153.4
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCC
Q 030960 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (168)
Q Consensus 1 ~l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (168)
|+|++|+.|+.++||||||||+|+++.+|.+.+.+.+..+++.+-+||++||||....+|-||++||+++-|||||+|||
T Consensus 232 lVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPG 311 (406)
T COG1222 232 LVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPG 311 (406)
T ss_pred HHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCC
Confidence 58999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred CcceEEecCCCCHHHHHHHHHh-----hcCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQM-----NLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~~-----~l~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
|||+.|+||+|+.+.|.+||+. .+.+++||+.+|..|+|+||+||+++|.+|.+.|+|+.+..+|++||..|+++
T Consensus 312 R~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 312 RFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred cccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHH
Confidence 9999999999999999999984 45579999999999999999999999999999999999999999999999999
Q ss_pred hcCCC
Q 030960 156 NVKKP 160 (168)
Q Consensus 156 ~~p~~ 160 (168)
+....
T Consensus 392 V~~~~ 396 (406)
T COG1222 392 VVKKK 396 (406)
T ss_pred HHhcc
Confidence 87754
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-39 Score=268.04 Aligned_cols=156 Identities=43% Similarity=0.665 Sum_probs=144.9
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
|+++|++|++.+||||||||+|+++..|++..+ ....++++++|++|||+...++|+|||+||+|+.||+|++||||
T Consensus 516 ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGR 592 (693)
T KOG0730|consen 516 IREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGR 592 (693)
T ss_pred HHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcc
Confidence 789999999999999999999999999974443 45679999999999999999999999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC--CCccCHHHHHHHHH
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN--RYVILPKDFEKGYR 154 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~--~~~i~~~d~~~al~ 154 (168)
||+.||||+|+.+.|.+||+.+.. +++++.+||+.|+||||+||..+|++|+..|++++ -..|+++||++|++
T Consensus 593 lD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~ 672 (693)
T KOG0730|consen 593 LDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALK 672 (693)
T ss_pred cceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 999999999999999999996665 68899999999999999999999999999999986 35699999999999
Q ss_pred hhcCCC
Q 030960 155 TNVKKP 160 (168)
Q Consensus 155 ~~~p~~ 160 (168)
..+|+-
T Consensus 673 ~~r~s~ 678 (693)
T KOG0730|consen 673 AVRPSL 678 (693)
T ss_pred hhcccC
Confidence 998865
No 3
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-37 Score=254.08 Aligned_cols=156 Identities=35% Similarity=0.616 Sum_probs=141.4
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
+|.+|++|+..+||||||||+|+|++.|+...+. ...+++|+||++|||+....+|+|||+||+|+-||||++||||
T Consensus 593 VR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~---~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGR 669 (802)
T KOG0733|consen 593 VRQVFQRARASAPCVIFFDEIDALVPRRSDEGSS---VSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGR 669 (802)
T ss_pred HHHHHHHhhcCCCeEEEecchhhcCcccCCCCch---hHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCc
Confidence 6899999999999999999999999999766543 3459999999999999999999999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhc-------CCCCCHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHhC------------
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNL-------SDEVDLEDYVSRPD--KISAAEIAAICQEAGMHAVRKN------------ 140 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l-------~~~~~~~~la~~t~--g~s~~di~~l~~~a~~~a~~~~------------ 140 (168)
||+.+++++|+.++|.+||+... ..++++++||..+. ||||+||..+|++|.+.|+++.
T Consensus 670 lDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~ 749 (802)
T KOG0733|consen 670 LDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVT 749 (802)
T ss_pred cCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccc
Confidence 99999999999999999998544 47899999998876 9999999999999999999873
Q ss_pred ----CCccCHHHHHHHHHhhcCCC
Q 030960 141 ----RYVILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 141 ----~~~i~~~d~~~al~~~~p~~ 160 (168)
...++..||++|+++++|+-
T Consensus 750 ~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 750 VRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred eeeeeeeecHHHHHHHHHhcCCCc
Confidence 12478889999999999975
No 4
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-36 Score=247.15 Aligned_cols=154 Identities=36% Similarity=0.540 Sum_probs=143.4
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
+|++|+.|++.+||||||||+|+++++|...... ..++.++++|.+||++.++.+|+||++||.|+.||+||.||||
T Consensus 385 VRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~---y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGR 461 (752)
T KOG0734|consen 385 VRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH---YAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGR 461 (752)
T ss_pred HHHHHHHHHhcCCeEEEEechhhhcccCCccHHH---HHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCc
Confidence 6899999999999999999999999998443322 5679999999999999999999999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
||+.|.+|.||...|.+||+.|+. +++|+.-||.-|.||||+||+|+++.|+..|...+...++.++|+-|-.++
T Consensus 462 FD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 462 FDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRI 541 (752)
T ss_pred cceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhhe
Confidence 999999999999999999998876 589999999999999999999999999999999999999999999998776
Q ss_pred cC
Q 030960 157 VK 158 (168)
Q Consensus 157 ~p 158 (168)
.-
T Consensus 542 lM 543 (752)
T KOG0734|consen 542 LM 543 (752)
T ss_pred ee
Confidence 53
No 5
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-36 Score=225.28 Aligned_cols=168 Identities=88% Similarity=1.274 Sum_probs=162.3
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCC
Q 030960 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (168)
Q Consensus 1 ~l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (168)
|++++|..|++++|+||||||+|+++.+|-+...+.+...++++-++|++||++.+..+|-||++||+.+.+|||++|||
T Consensus 236 mvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpg 315 (408)
T KOG0727|consen 236 MVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPG 315 (408)
T ss_pred HHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEecCCCCHHHHHHHHH-----hhcCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~-----~~l~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
|+|++|+||+|+.-++.-+|. +.+.+++|++.+..+.+..|++||.++|++|.+.|++.++..+.+.||+++++.
T Consensus 316 rldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~ 395 (408)
T KOG0727|consen 316 RLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKT 395 (408)
T ss_pred cccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHh
Confidence 999999999999999998886 667789999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcccccC
Q 030960 156 NVKKPDTDFEFYK 168 (168)
Q Consensus 156 ~~p~~~~~~~~~k 168 (168)
.......++++||
T Consensus 396 ~vk~~~~~~~fyk 408 (408)
T KOG0727|consen 396 VVKKDETQFEFYK 408 (408)
T ss_pred hcCCcccchhccC
Confidence 9999999999997
No 6
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-36 Score=237.32 Aligned_cols=163 Identities=37% Similarity=0.587 Sum_probs=145.5
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCC----CCeEEEEecCCCCCCCccc
Q 030960 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQT----VNVKVIMATNRADTLDPAL 76 (168)
Q Consensus 1 ~l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~----~~v~vi~ttn~~~~ld~al 76 (168)
|+|-+|+.|+.++|++|||||||+|+..|++. +.+...+++.++||.+|||+..+ +-|+|+|+||.||+||.|+
T Consensus 292 lvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAl 369 (491)
T KOG0738|consen 292 LVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEAL 369 (491)
T ss_pred HHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHH
Confidence 57899999999999999999999999999655 45666789999999999998532 2399999999999999999
Q ss_pred cCCCCcceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC-----------
Q 030960 77 LRPGRLDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN----------- 140 (168)
Q Consensus 77 ~r~grf~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~----------- 140 (168)
+| ||.+.|+||+|+.+.|..+++.++. ++++++.+|+.++||||+||.++|++|.+.+.|+.
T Consensus 370 rR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~ 447 (491)
T KOG0738|consen 370 RR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQ 447 (491)
T ss_pred HH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhh
Confidence 99 9999999999999999999998776 58899999999999999999999999999999862
Q ss_pred ------CCccCHHHHHHHHHhhcCCCC-Cccccc
Q 030960 141 ------RYVILPKDFEKGYRTNVKKPD-TDFEFY 167 (168)
Q Consensus 141 ------~~~i~~~d~~~al~~~~p~~~-~~~~~~ 167 (168)
+.+++..||+.|++++.|+.. ..++.|
T Consensus 448 lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ 481 (491)
T KOG0738|consen 448 LAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKY 481 (491)
T ss_pred hhhhccccccchhhHHHHHHHcCcCCCHHHHHHH
Confidence 247999999999999999876 455444
No 7
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-34 Score=218.39 Aligned_cols=159 Identities=48% Similarity=0.830 Sum_probs=149.9
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCC
Q 030960 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (168)
Q Consensus 1 ~l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (168)
|++++|-.|+.++|+|||+||+|+++..|...+++.++..++..-++|+++|++..++++-||++||+++-+|||++|||
T Consensus 228 mvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpg 307 (404)
T KOG0728|consen 228 MVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPG 307 (404)
T ss_pred HHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCC
Confidence 57999999999999999999999999999888888888999999999999999999999999999999999999999999
Q ss_pred CcceEEecCCCCHHHHHHHHHhh-----cCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~~~-----l~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
|+|+.|+||+|+.+.|.+|++.+ +...+++..+|+..+|.||++++.+|.+|.+.|+++.+..+|++||+-|..+
T Consensus 308 ridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~k 387 (404)
T KOG0728|consen 308 RIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 387 (404)
T ss_pred cccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHH
Confidence 99999999999999999999844 4468999999999999999999999999999999999999999999999987
Q ss_pred hcCC
Q 030960 156 NVKK 159 (168)
Q Consensus 156 ~~p~ 159 (168)
+...
T Consensus 388 vm~k 391 (404)
T KOG0728|consen 388 VMQK 391 (404)
T ss_pred HHhc
Confidence 6653
No 8
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=4e-34 Score=232.31 Aligned_cols=166 Identities=87% Similarity=1.298 Sum_probs=152.6
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++++|..|+..+||||||||+|.++..|.+...+.+....+++..++++++++....+++||++||+++.||++++||||
T Consensus 227 lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GR 306 (398)
T PTZ00454 227 VRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGR 306 (398)
T ss_pred HHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCc
Confidence 67899999999999999999999998886555555666778999999999999888899999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
||+.|+|++|+.++|..||+.++. .++++.+++..|+||||+||.++|++|.+.|++++...|+.+||.+|++++
T Consensus 307 fd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 307 LDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTV 386 (398)
T ss_pred ccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 999999999999999999996655 578999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccc
Q 030960 157 VKKPDTDFEFY 167 (168)
Q Consensus 157 ~p~~~~~~~~~ 167 (168)
.......+.||
T Consensus 387 ~~~~~~~~~~~ 397 (398)
T PTZ00454 387 VRKTDRDYDFY 397 (398)
T ss_pred Hhccccchhcc
Confidence 88777778777
No 9
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-34 Score=242.11 Aligned_cols=158 Identities=33% Similarity=0.555 Sum_probs=141.4
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC--CCCCeEEEEecCCCCCCCccccCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD--QTVNVKVIMATNRADTLDPALLRP 79 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~v~vi~ttn~~~~ld~al~r~ 79 (168)
+|++|++||..+||||||||+|+++++|+.++ .+...+.++++++|.+||++. ....|+|||+||+|+.|||||+||
T Consensus 753 VR~VFerAR~A~PCVIFFDELDSlAP~RG~sG-DSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRP 831 (953)
T KOG0736|consen 753 VREVFERARSAAPCVIFFDELDSLAPNRGRSG-DSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRP 831 (953)
T ss_pred HHHHHHHhhccCCeEEEeccccccCccCCCCC-CccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCC
Confidence 79999999999999999999999999996544 556678899999999999996 466899999999999999999999
Q ss_pred CCcceEEecCCC-CHHHHHHHHH-----hhcCCCCCHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHhC------------
Q 030960 80 GRLDRKIEFPLP-DRRQKRLVFQ-----MNLSDEVDLEDYVSRP-DKISAAEIAAICQEAGMHAVRKN------------ 140 (168)
Q Consensus 80 grf~~~i~~~~P-~~~~R~~il~-----~~l~~~~~~~~la~~t-~g~s~~di~~l~~~a~~~a~~~~------------ 140 (168)
||||+.+|++++ +.+.+..+++ ..+++++++.++|+.+ +.|||+|+.++|.+|.+.|++|.
T Consensus 832 GRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~ 911 (953)
T KOG0736|consen 832 GRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEE 911 (953)
T ss_pred CccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 999999999988 5566778886 5667899999999998 46999999999999999999883
Q ss_pred -----CCccCHHHHHHHHHhhcCCC
Q 030960 141 -----RYVILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 141 -----~~~i~~~d~~~al~~~~p~~ 160 (168)
.-.++++||.+++++.+|+-
T Consensus 912 e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 912 EQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred ccCCceEEEEHHHHHHHHHhcCCcc
Confidence 13689999999999999975
No 10
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-34 Score=214.63 Aligned_cols=167 Identities=50% Similarity=0.826 Sum_probs=158.0
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCC
Q 030960 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (168)
Q Consensus 1 ~l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (168)
++|..|..|+..+|+||||||+|+++.+|-++....+..+++..-++|+++|++.++..|-||++||+.+-+|||++|.|
T Consensus 252 LVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSG 331 (424)
T KOG0652|consen 252 LVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSG 331 (424)
T ss_pred HHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcc
Confidence 57899999999999999999999999999888888889999999999999999999999999999999999999999999
Q ss_pred CcceEEecCCCCHHHHHHHHHhh-----cCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~~~-----l~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
|+|++|+||.|+.+.|.+|++.+ ..++++|+++|..|++|.|++++.+|-+|.+.|++++...++.+||.++|.+
T Consensus 332 RLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~e 411 (424)
T KOG0652|consen 332 RLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILE 411 (424)
T ss_pred cccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHHHHHHHHH
Confidence 99999999999999999999844 4479999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCccccc
Q 030960 156 NVKKPDTDFEFY 167 (168)
Q Consensus 156 ~~p~~~~~~~~~ 167 (168)
++...+..+.+|
T Consensus 412 VqakKka~l~yy 423 (424)
T KOG0652|consen 412 VQAKKKASLNYY 423 (424)
T ss_pred HHHhhhhccccc
Confidence 888777777766
No 11
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-33 Score=237.50 Aligned_cols=156 Identities=44% Similarity=0.698 Sum_probs=143.7
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccC-CCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFD-AQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~-~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (168)
++++|..|+.++||||||||+|+++..|++ .....+...+..++++|.+||++..+.+|+|+|+||+++.+|+|++|||
T Consensus 392 vr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpG 471 (774)
T KOG0731|consen 392 VRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPG 471 (774)
T ss_pred HHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCC
Confidence 689999999999999999999999999942 3334555667999999999999998889999999999999999999999
Q ss_pred CcceEEecCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
|||+.|++++|+..+|.+|++.|+. +++++..+|.+|+||||+||.++|++|+..|++++...|+..||+.|++
T Consensus 472 Rfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 472 RFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIE 551 (774)
T ss_pred ccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHH
Confidence 9999999999999999999997776 4678888999999999999999999999999999999999999999999
Q ss_pred hhc
Q 030960 155 TNV 157 (168)
Q Consensus 155 ~~~ 157 (168)
+..
T Consensus 552 Rvi 554 (774)
T KOG0731|consen 552 RVI 554 (774)
T ss_pred HHh
Confidence 654
No 12
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-33 Score=215.65 Aligned_cols=161 Identities=54% Similarity=0.945 Sum_probs=151.6
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCC
Q 030960 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (168)
Q Consensus 1 ~l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (168)
++|++|+.|..++|+|+||||||+++.+|-+++++....+++..-++|+++|+|.....|-||++||+++.|||||+|||
T Consensus 266 lvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPG 345 (440)
T KOG0726|consen 266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPG 345 (440)
T ss_pred HHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCC
Confidence 57999999999999999999999999999888888999999999999999999999989999999999999999999999
Q ss_pred CcceEEecCCCCHHHHHHHHH-----hhcCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~-----~~l~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
|+|+.|+|+.|+...+..||. +-+.++++++++...-+.+||+||+++|.+|.+.|+|+.+..++.+||..|.++
T Consensus 346 rIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~ 425 (440)
T KOG0726|consen 346 RIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEK 425 (440)
T ss_pred ccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHH
Confidence 999999999999999999997 556689999999999999999999999999999999999999999999999998
Q ss_pred hcCCCC
Q 030960 156 NVKKPD 161 (168)
Q Consensus 156 ~~p~~~ 161 (168)
+.-+.+
T Consensus 426 V~~~K~ 431 (440)
T KOG0726|consen 426 VLYKKK 431 (440)
T ss_pred HHHhcc
Confidence 765443
No 13
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-33 Score=232.53 Aligned_cols=157 Identities=41% Similarity=0.647 Sum_probs=146.8
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
+|++|..|++++||||||||+|+++..|+....+.+...++.++++|.+||++..+.+|+||++||+|+-+|+||+||||
T Consensus 231 VRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgR 310 (596)
T COG0465 231 VRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGR 310 (596)
T ss_pred HHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCC
Confidence 68999999999999999999999999997666666667789999999999999988899999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
||+.|.++.||...|++|++.+.. +++++..+|..|+||||+|+++++++|+..++++++..++..||.+|+.++
T Consensus 311 FDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv 390 (596)
T COG0465 311 FDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRV 390 (596)
T ss_pred cceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHH
Confidence 999999999999999999994443 689999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 030960 157 VK 158 (168)
Q Consensus 157 ~p 158 (168)
.-
T Consensus 391 ~~ 392 (596)
T COG0465 391 IA 392 (596)
T ss_pred hc
Confidence 63
No 14
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-33 Score=230.54 Aligned_cols=135 Identities=39% Similarity=0.655 Sum_probs=122.7
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCC----CCeEEEEecCCCCCCCcccc
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQT----VNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~----~~v~vi~ttn~~~~ld~al~ 77 (168)
|+++|+.|+.++|||+||||||++.++|...+... .++++.+||+.||++... .+|+|||+||+|+.|||+|+
T Consensus 271 iRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreM---ErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLR 347 (802)
T KOG0733|consen 271 IRELFDQAKSNAPCIVFIDEIDAITPKREEAQREM---ERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALR 347 (802)
T ss_pred HHHHHHHHhccCCeEEEeecccccccchhhHHHHH---HHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHh
Confidence 78999999999999999999999999996544333 349999999999998433 57999999999999999999
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHh-----hcCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHh
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQM-----NLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK 139 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~-----~l~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~ 139 (168)
|+||||+.|.++.|+..+|.+||+. .+..++++.+||..|+||.|+||.++|.+|+..|+++
T Consensus 348 RaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 348 RAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred ccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999984 3447899999999999999999999999999999988
No 15
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=6e-32 Score=224.05 Aligned_cols=159 Identities=24% Similarity=0.368 Sum_probs=139.7
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++++|+.|+..+||||||||+|.++.++... +.+....++++.|++++++ ...+|+||||||+++.||++++||||
T Consensus 307 l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~allR~GR 382 (489)
T CHL00195 307 MRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEILRKGR 382 (489)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHHhCCCc
Confidence 6889999999999999999999998765322 2334556899999999984 55689999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcCC-------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLSD-------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~~-------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
||..+++++|+.++|.+||+.++.. +.+++.+|+.|+||||+||+++|.+|+..|..++ ..++.+||..|++
T Consensus 383 FD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~dl~~a~~ 461 (489)
T CHL00195 383 FDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTDDILLALK 461 (489)
T ss_pred CCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHHHHHHHHH
Confidence 9999999999999999999977752 6789999999999999999999999999998875 4689999999999
Q ss_pred hhcCCCCCccc
Q 030960 155 TNVKKPDTDFE 165 (168)
Q Consensus 155 ~~~p~~~~~~~ 165 (168)
++.|.+..+.+
T Consensus 462 ~~~Pls~~~~e 472 (489)
T CHL00195 462 QFIPLAQTEKE 472 (489)
T ss_pred hcCCCcccCHH
Confidence 99998765543
No 16
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.1e-31 Score=218.20 Aligned_cols=162 Identities=52% Similarity=0.824 Sum_probs=147.6
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|+.|+..+||||||||+|.++..+.+.....+....+.+..++..++++....++.||+|||+++.+|++++||||
T Consensus 213 i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgR 292 (389)
T PRK03992 213 VRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGR 292 (389)
T ss_pred HHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCcc
Confidence 67899999999999999999999998886655555566778888999999998887899999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
||..|+|++|+.++|.+||+.++. .++++..+|..|+||||+||.++|++|++.|++++...|+.+||.+|++.+
T Consensus 293 fd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~ 372 (389)
T PRK03992 293 FDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKV 372 (389)
T ss_pred CceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 999999999999999999997655 468999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCc
Q 030960 157 VKKPDTD 163 (168)
Q Consensus 157 ~p~~~~~ 163 (168)
+++..+.
T Consensus 373 ~~~~~~~ 379 (389)
T PRK03992 373 MGKEEKD 379 (389)
T ss_pred hcccccc
Confidence 9876554
No 17
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.9e-32 Score=225.62 Aligned_cols=157 Identities=40% Similarity=0.681 Sum_probs=145.5
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
|+.+|..|++.+||||||||+|++++.|+....+.. .+++++++.+++++....+|+||++||+|+.+|+|++||||
T Consensus 324 ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~---~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gR 400 (494)
T COG0464 324 IRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSG---RRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGR 400 (494)
T ss_pred HHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHH---HHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCc
Confidence 789999999999999999999999999865554433 59999999999999999999999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC-CCccCHHHHHHHH
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN-RYVILPKDFEKGY 153 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~-~~~i~~~d~~~al 153 (168)
||..++|++|+.++|.+||+.++. .++++..+++.|+||||+||..+|++|++.++++. ...++.+||..|+
T Consensus 401 fd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~ 480 (494)
T COG0464 401 FDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDAL 480 (494)
T ss_pred cceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHH
Confidence 999999999999999999998877 36889999999999999999999999999999998 7789999999999
Q ss_pred HhhcCCCC
Q 030960 154 RTNVKKPD 161 (168)
Q Consensus 154 ~~~~p~~~ 161 (168)
++..|+-.
T Consensus 481 ~~~~p~~~ 488 (494)
T COG0464 481 KKIKPSVT 488 (494)
T ss_pred HhcCCCCC
Confidence 99888754
No 18
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.98 E-value=1e-31 Score=242.13 Aligned_cols=150 Identities=22% Similarity=0.263 Sum_probs=131.3
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC---CCCCeEEEEecCCCCCCCccccC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD---QTVNVKVIMATNRADTLDPALLR 78 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---~~~~v~vi~ttn~~~~ld~al~r 78 (168)
|+.+|+.|++++||||||||||+++.+. .. ...++.+++.|++.. ...+|+||||||+|+.|||||+|
T Consensus 1721 Ir~lFelARk~SPCIIFIDEIDaL~~~d------s~---~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLR 1791 (2281)
T CHL00206 1721 ITLQFELAKAMSPCIIWIPNIHDLNVNE------SN---YLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIA 1791 (2281)
T ss_pred HHHHHHHHHHCCCeEEEEEchhhcCCCc------cc---eehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcC
Confidence 6789999999999999999999998652 00 134788899998763 45689999999999999999999
Q ss_pred CCCcceEEecCCCCHHHHHHHHHh-------hcCC-CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 030960 79 PGRLDRKIEFPLPDRRQKRLVFQM-------NLSD-EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 150 (168)
Q Consensus 79 ~grf~~~i~~~~P~~~~R~~il~~-------~l~~-~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~ 150 (168)
|||||+.|+|+.|+..+|++++.. ++.+ .++++.+|..|.|||||||+++|++|+..|+++++..|+.++|.
T Consensus 1792 PGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~ 1871 (2281)
T CHL00206 1792 PNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIR 1871 (2281)
T ss_pred CCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Confidence 999999999999999999998863 2333 36899999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCC
Q 030960 151 KGYRTNVKKP 160 (168)
Q Consensus 151 ~al~~~~p~~ 160 (168)
.|+.++.+..
T Consensus 1872 ~Al~Rq~~g~ 1881 (2281)
T CHL00206 1872 SALHRQTWDL 1881 (2281)
T ss_pred HHHHHHHhhh
Confidence 9999887644
No 19
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-32 Score=211.61 Aligned_cols=155 Identities=33% Similarity=0.557 Sum_probs=140.5
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC-CCCCCeEEEEecCCCCCCCccccCC
Q 030960 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-DQTVNVKVIMATNRADTLDPALLRP 79 (168)
Q Consensus 1 ~l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~v~vi~ttn~~~~ld~al~r~ 79 (168)
|++.+|+.|+++.|+||||||+|++++.|+.+++.. .+++..+||.+|+++ ..+.+|+|+++||.||.||.|++|
T Consensus 213 LVknLFemARe~kPSIIFiDEiDslcg~r~enEsea---sRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRR- 288 (439)
T KOG0739|consen 213 LVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEA---SRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRR- 288 (439)
T ss_pred HHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHH---HHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHH-
Confidence 578999999999999999999999999886655544 459999999999998 556789999999999999999999
Q ss_pred CCcceEEecCCCCHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC-------------
Q 030960 80 GRLDRKIEFPLPDRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN------------- 140 (168)
Q Consensus 80 grf~~~i~~~~P~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~------------- 140 (168)
||++.||+|+|+...|..||+.++.+ +.|+.+|+.+|+||||+||.-++++|.+..+|..
T Consensus 289 -RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsAthFk~v~~~s 367 (439)
T KOG0739|consen 289 -RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGPS 367 (439)
T ss_pred -HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCCC
Confidence 99999999999999999999988873 5689999999999999999999999999998872
Q ss_pred ---------------------------------CCccCHHHHHHHHHhhcCCC
Q 030960 141 ---------------------------------RYVILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 141 ---------------------------------~~~i~~~d~~~al~~~~p~~ 160 (168)
.+++|..||..++.+.+|.-
T Consensus 368 ~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTv 420 (439)
T KOG0739|consen 368 NPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTV 420 (439)
T ss_pred ChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCC
Confidence 14799999999999999965
No 20
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=9.8e-31 Score=218.64 Aligned_cols=157 Identities=42% Similarity=0.650 Sum_probs=142.6
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|+.|+..+||||||||+|.++..+.....+.+....++++.|+..|+++.+..+++||+|||+|+.||++++||||
T Consensus 136 l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gR 215 (495)
T TIGR01241 136 VRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGR 215 (495)
T ss_pred HHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCc
Confidence 67899999999999999999999998875543344445568999999999999888899999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
||+.+++++|+.++|.+||+.++. .+.++..+|..|.|||++||.++|++|+..+.++++..|+.+||.+|+.++
T Consensus 216 fd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 216 FDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred ceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 999999999999999999997765 367899999999999999999999999999999999999999999999987
Q ss_pred cC
Q 030960 157 VK 158 (168)
Q Consensus 157 ~p 158 (168)
..
T Consensus 296 ~~ 297 (495)
T TIGR01241 296 IA 297 (495)
T ss_pred hc
Confidence 64
No 21
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=1.2e-30 Score=226.84 Aligned_cols=158 Identities=41% Similarity=0.673 Sum_probs=141.1
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|+.|+..+||||||||+|.+++.|+.... .....+++++|+..|+++....+++||+|||+|+.||++++||||
T Consensus 535 i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~--~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgR 612 (733)
T TIGR01243 535 IREIFRKARQAAPAIIFFDEIDAIAPARGARFD--TSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGR 612 (733)
T ss_pred HHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC--ccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCc
Confidence 688999999999999999999999998854322 224568999999999999888899999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC----------------
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN---------------- 140 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~---------------- 140 (168)
||+.+++++|+.++|.+||+.+.. ++++++.+|+.|+||||+||.++|++|+..++++.
T Consensus 613 fd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~ 692 (733)
T TIGR01243 613 FDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEF 692 (733)
T ss_pred cceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccc
Confidence 999999999999999999986544 57899999999999999999999999999998852
Q ss_pred --CCccCHHHHHHHHHhhcCCCC
Q 030960 141 --RYVILPKDFEKGYRTNVKKPD 161 (168)
Q Consensus 141 --~~~i~~~d~~~al~~~~p~~~ 161 (168)
...|+.+||.+|+++++|+..
T Consensus 693 ~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 693 LKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred cccCcccHHHHHHHHHHcCCCCC
Confidence 126999999999999999763
No 22
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=1.1e-30 Score=223.61 Aligned_cols=158 Identities=39% Similarity=0.612 Sum_probs=144.4
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|+.|+..+||||||||+|.++..|+....+.+....++++.+|..|+++....+++||+|||+|+.||++++||||
T Consensus 233 ~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgR 312 (644)
T PRK10733 233 VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGR 312 (644)
T ss_pred HHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcc
Confidence 57899999999999999999999998886554445555678999999999999888899999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
||+.++|++|+.++|.+||+.++. .++++..+|..|.||||+||.++|++|+..|++.++..|+..||+.|+.++
T Consensus 313 fdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 313 FDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 392 (644)
T ss_pred cceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence 999999999999999999997765 478899999999999999999999999999999999999999999999887
Q ss_pred cCC
Q 030960 157 VKK 159 (168)
Q Consensus 157 ~p~ 159 (168)
.+.
T Consensus 393 ~~g 395 (644)
T PRK10733 393 MMG 395 (644)
T ss_pred hcc
Confidence 653
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=6.2e-31 Score=215.30 Aligned_cols=157 Identities=54% Similarity=0.949 Sum_probs=144.1
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|..|+.++||||||||+|.++..+....++.+....+.+.+++..++++....++.||++||+++.+|++++||||
T Consensus 265 vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGR 344 (438)
T PTZ00361 265 VRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGR 344 (438)
T ss_pred HHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCe
Confidence 68899999999999999999999998886655555666778888999999998877789999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
||..|+|++|+.++|.+||+.++. .++++..++..|+||||+||.++|++|++.|++++...|+.+||..|++++
T Consensus 345 fd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 345 IDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKV 424 (438)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHH
Confidence 999999999999999999997654 578999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 030960 157 VK 158 (168)
Q Consensus 157 ~p 158 (168)
..
T Consensus 425 ~~ 426 (438)
T PTZ00361 425 LY 426 (438)
T ss_pred Hh
Confidence 54
No 24
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.2e-31 Score=219.35 Aligned_cols=135 Identities=38% Similarity=0.637 Sum_probs=125.2
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
+|.+|++|+..+|||+||||+|+++++|+-.+.+-. .++++++|++|||.+.-.+|.|+|+|++|+-|||||+||||
T Consensus 749 vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVT---DRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGR 825 (952)
T KOG0735|consen 749 VRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVT---DRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGR 825 (952)
T ss_pred HHHHHHHhhccCCeEEEeccccccCcccCCCCCCch---HHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCc
Confidence 689999999999999999999999999976555443 49999999999999999999999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHH-----hhcCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQ-----MNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK 139 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~-----~~l~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~ 139 (168)
+|+.++.++|+..+|.+|++ ...+.++|++.+|..|+||||+||..++-+|.+.|+++
T Consensus 826 lD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 826 LDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred cceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999998 34457899999999999999999999999999888876
No 25
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6e-31 Score=199.92 Aligned_cols=160 Identities=49% Similarity=0.794 Sum_probs=149.4
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCC
Q 030960 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (168)
Q Consensus 1 ~l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (168)
|++++|+.|+....|||||||+|++++.|-+...+.+..+++...++++++|++....++-|+++||+|+.|||||+|||
T Consensus 258 mvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpg 337 (435)
T KOG0729|consen 258 MVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPG 337 (435)
T ss_pred HHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCc
Confidence 58999999999999999999999999999777777778889999999999999999999999999999999999999999
Q ss_pred CcceEEecCCCCHHHHHHHHHhh-----cCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~~~-----l~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
|+|++++|++|+.+.|..||+.+ ...++-|+.+|..|+.-||++|.++|.+|.+.|++..++..|++||..|+++
T Consensus 338 rldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av~k 417 (435)
T KOG0729|consen 338 RLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNK 417 (435)
T ss_pred ccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999999999999999999844 4467889999999999999999999999999999999999999999999998
Q ss_pred hcCCC
Q 030960 156 NVKKP 160 (168)
Q Consensus 156 ~~p~~ 160 (168)
+.+..
T Consensus 418 vvkgy 422 (435)
T KOG0729|consen 418 VVKGY 422 (435)
T ss_pred HHHHH
Confidence 87644
No 26
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=6.2e-30 Score=217.74 Aligned_cols=156 Identities=40% Similarity=0.629 Sum_probs=142.7
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|+.|+..+||||||||+|.++..|+....+.+....+.++.++..++++....+++||++||+++.+|++++||||
T Consensus 264 vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGR 343 (638)
T CHL00176 264 VRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGR 343 (638)
T ss_pred HHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhcccc
Confidence 57899999999999999999999998876555555566678999999999999888899999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
||+.+++++|+.++|.+||+.++. .+.++..+|..|.|||++||.++|++|+..+.+++...|+.+||++|+.++
T Consensus 344 Fd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 344 FDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred CceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 999999999999999999997765 466889999999999999999999999999999999999999999999987
Q ss_pred c
Q 030960 157 V 157 (168)
Q Consensus 157 ~ 157 (168)
.
T Consensus 424 ~ 424 (638)
T CHL00176 424 I 424 (638)
T ss_pred H
Confidence 3
No 27
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=5.2e-30 Score=193.82 Aligned_cols=156 Identities=29% Similarity=0.500 Sum_probs=139.7
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
|+++|+.|++.+|||+||||+|+++-.|.-.+- -..+..++|.+|+.||++.++.+|+.||+||+|+.||+|+++ |
T Consensus 199 Ihely~rA~~~aPcivFiDE~DAiaLdRryQel--RGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--R 274 (368)
T COG1223 199 IHELYERARKAAPCIVFIDELDAIALDRRYQEL--RGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--R 274 (368)
T ss_pred HHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHh--cccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--h
Confidence 789999999999999999999999987744321 112348999999999999999999999999999999999999 9
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHH-HHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAA-ICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~-l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
|...|+|.+|+.++|.+|++.+.. -+.++..+++.|.||||+||.. ++..|.+.|+.+++..|+.+||+.|+++
T Consensus 275 FEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 275 FEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred hhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHh
Confidence 999999999999999999997766 3678999999999999999986 7888999999999999999999999998
Q ss_pred hcCCCC
Q 030960 156 NVKKPD 161 (168)
Q Consensus 156 ~~p~~~ 161 (168)
..+...
T Consensus 355 ~r~~r~ 360 (368)
T COG1223 355 ERKRRA 360 (368)
T ss_pred hccccC
Confidence 776543
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=1.4e-28 Score=198.69 Aligned_cols=155 Identities=54% Similarity=0.821 Sum_probs=140.5
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|+.|+..+|+||||||+|.++..+.+...+.+....+.+..++..++++...+++.||+|||+++.+|++++||||
T Consensus 204 i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~gr 283 (364)
T TIGR01242 204 VREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGR 283 (364)
T ss_pred HHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCccc
Confidence 57899999999999999999999998776555455556678888999999988777799999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
||+.|+|++|+.++|.+||+.+.. .++++..++..|+||||+||.++|++|++.|++++...|+.+||..|+.++
T Consensus 284 fd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 284 FDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred CceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 999999999999999999986654 457899999999999999999999999999999999999999999999875
No 29
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.9e-29 Score=195.86 Aligned_cols=153 Identities=31% Similarity=0.503 Sum_probs=135.1
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCC--eEEEEecCCCCCCCccccC
Q 030960 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVN--VKVIMATNRADTLDPALLR 78 (168)
Q Consensus 1 ~l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~--v~vi~ttn~~~~ld~al~r 78 (168)
+++.+|..|...+||||||||+|++++.|. ++.+..+..+.++|+..+||+..+.+ |+|+|+||+|.++|.|++|
T Consensus 174 lv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR 250 (386)
T KOG0737|consen 174 LVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR 250 (386)
T ss_pred HHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHH
Confidence 468899999999999999999999999882 45666777999999999999966554 9999999999999999999
Q ss_pred CCCcceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC-------------
Q 030960 79 PGRLDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN------------- 140 (168)
Q Consensus 79 ~grf~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~------------- 140 (168)
|+.+.++|+.|+..+|.+|++..+. +++|+.++|..|+||||+||.++|..|+..++++-
T Consensus 251 --R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~d~d~~ 328 (386)
T KOG0737|consen 251 --RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLLDLDKA 328 (386)
T ss_pred --hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccchhhhhh
Confidence 9999999999999999999997766 68999999999999999999999999999888751
Q ss_pred ---------------CCccCHHHHHHHHHhhcC
Q 030960 141 ---------------RYVILPKDFEKGYRTNVK 158 (168)
Q Consensus 141 ---------------~~~i~~~d~~~al~~~~p 158 (168)
..++.++||..+++++-+
T Consensus 329 ~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~ 361 (386)
T KOG0737|consen 329 IADLKPTQAAASSCLLRPLEQEDFPKAINRVSA 361 (386)
T ss_pred hhhccCCcccccccccCcccHHHHHHHHHhhhh
Confidence 146778888888875444
No 30
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.1e-27 Score=194.06 Aligned_cols=151 Identities=34% Similarity=0.539 Sum_probs=138.1
Q ss_pred HHHHHHHHHHcC-CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCC
Q 030960 2 VRDVFRLAKENA-PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (168)
Q Consensus 2 l~~iF~~a~~~~-p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (168)
+|++|+.|..++ |++|||||+|+++++|..... ...++++++++.++++....+++|+++||+|+.||++++| |
T Consensus 266 LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~----~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR-g 340 (693)
T KOG0730|consen 266 LRKAFAEALKFQVPSIIFIDELDALCPKREGADD----VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR-G 340 (693)
T ss_pred HHHHHHHHhccCCCeeEeHHhHhhhCCcccccch----HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc-C
Confidence 789999999999 999999999999999855443 3459999999999999988899999999999999999999 9
Q ss_pred CcceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
|||+.+.++.|+..+|.+|++.+.. ++.++.++|..|.||+|+||..+|.+|++.+.++ +.++|..|+..
T Consensus 341 Rfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~~~~A~~~ 415 (693)
T KOG0730|consen 341 RFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEIFQEALMG 415 (693)
T ss_pred CCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHHHHHHHhc
Confidence 9999999999999999999985444 4689999999999999999999999999999998 78999999999
Q ss_pred hcCCCCC
Q 030960 156 NVKKPDT 162 (168)
Q Consensus 156 ~~p~~~~ 162 (168)
+.|+...
T Consensus 416 i~psa~R 422 (693)
T KOG0730|consen 416 IRPSALR 422 (693)
T ss_pred CCchhhh
Confidence 9987644
No 31
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.6e-27 Score=189.74 Aligned_cols=155 Identities=32% Similarity=0.517 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC--CCCCeEEEEecCCCCCCCccccC
Q 030960 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD--QTVNVKVIMATNRADTLDPALLR 78 (168)
Q Consensus 1 ~l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~v~vi~ttn~~~~ld~al~r 78 (168)
+||.+|..|+..+|+||||||+|.++..|.+.....+ .++..+++.++++.. ..++|+||||||.||.+|.+++|
T Consensus 233 ~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~s---rr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R 309 (428)
T KOG0740|consen 233 LVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESS---RRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR 309 (428)
T ss_pred HHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccc---hhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH
Confidence 5899999999999999999999999999955554444 488899999988773 45589999999999999999999
Q ss_pred CCCcceEEecCCCCHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC------------
Q 030960 79 PGRLDRKIEFPLPDRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN------------ 140 (168)
Q Consensus 79 ~grf~~~i~~~~P~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~------------ 140 (168)
||.+.+++|+|+.+.|..+|...+.+ +.+++.+++.|+|||++||.++|.+|++-.++..
T Consensus 310 --rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~~~~~ 387 (428)
T KOG0740|consen 310 --RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEFIDAD 387 (428)
T ss_pred --HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhhhcchh
Confidence 99999999999999999999977764 3678899999999999999999999987776653
Q ss_pred -CCccCHHHHHHHHHhhcCCC
Q 030960 141 -RYVILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 141 -~~~i~~~d~~~al~~~~p~~ 160 (168)
.+.++..||..+++.++|+-
T Consensus 388 ~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 388 KIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred ccCCCCcchHHHHHHhhcccc
Confidence 25789999999999999854
No 32
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.1e-27 Score=182.18 Aligned_cols=157 Identities=51% Similarity=0.830 Sum_probs=145.6
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCC
Q 030960 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (168)
Q Consensus 1 ~l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (168)
+||+.|..|+.+.|||||+||+|++++.+.......+..+++.+-.++++|+++..-.+|-+|+|||+|+.|||+|+|||
T Consensus 213 lIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpG 292 (388)
T KOG0651|consen 213 LIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPG 292 (388)
T ss_pred HHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCc
Confidence 58999999999999999999999999999777777778888999999999999999999999999999999999999999
Q ss_pred CcceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
|.|+.+++|.|+...|..|++.+-. ..++.+.+.+..+||.|+|+.+.|.+|.+-+++.....+-.+||..++.+
T Consensus 293 Rldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk 372 (388)
T KOG0651|consen 293 RLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDFMKLVRK 372 (388)
T ss_pred cccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhHHHHHHHHHH
Confidence 9999999999999999999985444 57889999999999999999999999999999988888999999999987
Q ss_pred hc
Q 030960 156 NV 157 (168)
Q Consensus 156 ~~ 157 (168)
+.
T Consensus 373 ~~ 374 (388)
T KOG0651|consen 373 QA 374 (388)
T ss_pred HH
Confidence 64
No 33
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.93 E-value=2.6e-25 Score=184.75 Aligned_cols=155 Identities=32% Similarity=0.485 Sum_probs=127.1
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcccc
Q 030960 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 2 l~~iF~~a~~~----~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (168)
++.+|+.|+.. .||||||||+|.++..|+...+ +....+++++|++.|+++...++++||+|||+++.||||++
T Consensus 274 ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s--~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALl 351 (512)
T TIGR03689 274 IRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS--SDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAIL 351 (512)
T ss_pred HHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc--chHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhc
Confidence 57889988864 6999999999999988743222 22235788999999999988889999999999999999999
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhcCCCCCH---------------HHHH----------------------------
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNLSDEVDL---------------EDYV---------------------------- 114 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l~~~~~~---------------~~la---------------------------- 114 (168)
||||||.+|+|++|+.++|.+||+.++.+...+ ..++
T Consensus 352 RpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~ 431 (512)
T TIGR03689 352 RPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEV 431 (512)
T ss_pred CccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceee
Confidence 999999999999999999999999888753332 1111
Q ss_pred -hCCCCCCHHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHhhcC
Q 030960 115 -SRPDKISAAEIAAICQEAGMHAVRK----NRYVILPKDFEKGYRTNVK 158 (168)
Q Consensus 115 -~~t~g~s~~di~~l~~~a~~~a~~~----~~~~i~~~d~~~al~~~~p 158 (168)
..++++||++|+++|..|...|+++ +...++.+|+..|+.....
T Consensus 432 l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~ 480 (512)
T TIGR03689 432 LYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFR 480 (512)
T ss_pred EeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhc
Confidence 1256789999999999998888876 3468999999999987654
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.2e-26 Score=189.20 Aligned_cols=158 Identities=32% Similarity=0.483 Sum_probs=139.5
Q ss_pred HHHHHHHHHH--------cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 2 VRDVFRLAKE--------NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 2 l~~iF~~a~~--------~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+|++|.-|.+ ..-.||+|||+|++|.+|++... .+.....+++++|+.||++.+-++++||+.||+.+-||
T Consensus 305 vR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g-~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlID 383 (744)
T KOG0741|consen 305 VRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAG-STGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLID 383 (744)
T ss_pred HHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCC-CCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHH
Confidence 6889988863 23689999999999999866543 33455699999999999999999999999999999999
Q ss_pred ccccCCCCcceEEecCCCCHHHHHHHHH---------hhcCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC----
Q 030960 74 PALLRPGRLDRKIEFPLPDRRQKRLVFQ---------MNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN---- 140 (168)
Q Consensus 74 ~al~r~grf~~~i~~~~P~~~~R~~il~---------~~l~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~---- 140 (168)
+||+|||||...+++.+||.+.|.+|++ .++..++|+.++|..|..|||++|+-+++.|...|+.+.
T Consensus 384 EALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~ 463 (744)
T KOG0741|consen 384 EALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAG 463 (744)
T ss_pred HHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999999999999997 455689999999999999999999999999988888763
Q ss_pred -----------CCccCHHHHHHHHHhhcCCC
Q 030960 141 -----------RYVILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 141 -----------~~~i~~~d~~~al~~~~p~~ 160 (168)
+-.|+.+||..|+++++|.-
T Consensus 464 ~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAF 494 (744)
T KOG0741|consen 464 GKVEVDPVAIENLKVTRGDFLNALEDVKPAF 494 (744)
T ss_pred cceecCchhhhheeecHHHHHHHHHhcCccc
Confidence 12599999999999999964
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.2e-25 Score=195.79 Aligned_cols=158 Identities=34% Similarity=0.522 Sum_probs=138.6
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|+.|+..+|+|||+||||-+++.|+......+ .++++.+|..|+|+...+.|+||++||+|+.+|||++||||
T Consensus 352 lrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih---~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgr 428 (1080)
T KOG0732|consen 352 LRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIH---ASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGR 428 (1080)
T ss_pred HHHHHHHHhccCceEEeccccccccccccchHHHhh---hhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcc
Confidence 678999999999999999999999999854443333 38999999999999999999999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCC--------------
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNR-------------- 141 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~-------------- 141 (168)
||+.++|++|+.+.|.+|+...-.+ .--+..+|+.|.||-|+||+.+|.+|+..++++.-
T Consensus 429 fdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~ 508 (1080)
T KOG0732|consen 429 FDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDV 508 (1080)
T ss_pred cceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccc
Confidence 9999999999999999999854442 22456799999999999999999999999998841
Q ss_pred --CccCHHHHHHHHHhhcCCCCC
Q 030960 142 --YVILPKDFEKGYRTNVKKPDT 162 (168)
Q Consensus 142 --~~i~~~d~~~al~~~~p~~~~ 162 (168)
..+...||..|+.+..|+...
T Consensus 509 ~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 509 ALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred hhhhhhhHhhhhhhhccCCCCCc
Confidence 248899999999999987644
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.91 E-value=2.1e-23 Score=181.66 Aligned_cols=157 Identities=39% Similarity=0.621 Sum_probs=136.9
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|+.|...+|+||||||+|.+++.++..... ...++++.|++.++++....+++||++||.++.+|++++||||
T Consensus 260 l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~---~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gR 336 (733)
T TIGR01243 260 LREIFKEAEENAPSIIFIDEIDAIAPKREEVTGE---VEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGR 336 (733)
T ss_pred HHHHHHHHHhcCCcEEEeehhhhhcccccCCcch---HHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchh
Confidence 6789999999999999999999999887443322 2247888999999998888899999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC----------------
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN---------------- 140 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~---------------- 140 (168)
|+..+++++|+.++|.+||+.+.. .+.+++.+++.|+||+++||..+|+.|+..++++.
T Consensus 337 fd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~ 416 (733)
T TIGR01243 337 FDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAE 416 (733)
T ss_pred ccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccch
Confidence 999999999999999999996544 46789999999999999999999999999888752
Q ss_pred ---CCccCHHHHHHHHHhhcCCCC
Q 030960 141 ---RYVILPKDFEKGYRTNVKKPD 161 (168)
Q Consensus 141 ---~~~i~~~d~~~al~~~~p~~~ 161 (168)
...++.+||..|++...|+..
T Consensus 417 ~~~~~~v~~~df~~Al~~v~ps~~ 440 (733)
T TIGR01243 417 VLKELKVTMKDFMEALKMVEPSAI 440 (733)
T ss_pred hcccccccHHHHHHHHhhcccccc
Confidence 124788999999999998763
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.89 E-value=7.1e-23 Score=162.71 Aligned_cols=134 Identities=22% Similarity=0.237 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHc-----CCeEEEEcccccccccccCCCCCcchHHHHHH-HHHHHhccCC------------CCCCCeEE
Q 030960 1 MVRDVFRLAKEN-----APAIIFIDEVDAIATARFDAQTGADREVQRIL-MELLNQMDGF------------DQTVNVKV 62 (168)
Q Consensus 1 ~l~~iF~~a~~~-----~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~-~~ll~~l~~~------------~~~~~v~v 62 (168)
+|+++|..|++. +||||||||||++++.+++.... ...+++ .+|++.+|+. ....+|+|
T Consensus 195 ~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~t---v~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~V 271 (413)
T PLN00020 195 LIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYT---VNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPI 271 (413)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcc---hHHHHHHHHHHHHhcCCccccccccccccccCCCceE
Confidence 489999999864 69999999999999988532221 223554 7999998863 23567999
Q ss_pred EEecCCCCCCCccccCCCCcceEEecCCCCHHHHHHHHHhhcCC----CCCHHHHHhCCCC----CCHHHHHHHHHHHHH
Q 030960 63 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD----EVDLEDYVSRPDK----ISAAEIAAICQEAGM 134 (168)
Q Consensus 63 i~ttn~~~~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~~----~~~~~~la~~t~g----~s~~di~~l~~~a~~ 134 (168)
|+|||+|+.||++|+||||||+.+ ..|+.++|.+||+.++.. ..++..|+..++| |+|+--..+..++..
T Consensus 272 IaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~ 349 (413)
T PLN00020 272 IVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVSREDVVKLVDTFPGQPLDFFGALRARVYDDEVR 349 (413)
T ss_pred EEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHH
Confidence 999999999999999999999975 589999999999977763 3467778888877 677777778887776
Q ss_pred HHHHh
Q 030960 135 HAVRK 139 (168)
Q Consensus 135 ~a~~~ 139 (168)
..+.+
T Consensus 350 ~~i~~ 354 (413)
T PLN00020 350 KWIAE 354 (413)
T ss_pred HHHHH
Confidence 66654
No 38
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.1e-19 Score=149.44 Aligned_cols=165 Identities=23% Similarity=0.336 Sum_probs=134.0
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhc-cCC-CCCCCeEEEEecCCCCCCCccccC
Q 030960 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQM-DGF-DQTVNVKVIMATNRADTLDPALLR 78 (168)
Q Consensus 1 ~l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l-~~~-~~~~~v~vi~ttn~~~~ld~al~r 78 (168)
+++.+|..|-+++|+||++|++|.|++..+. +++........+..+++++ ..+ .....+.+||+.+....+++.|..
T Consensus 482 ~l~~vfse~~~~~PSiIvLDdld~l~~~s~~-e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s 560 (952)
T KOG0735|consen 482 FLNNVFSEALWYAPSIIVLDDLDCLASASSN-ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVS 560 (952)
T ss_pred HHHHHHHHHHhhCCcEEEEcchhhhhccCcc-cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcC
Confidence 3788999999999999999999999984433 3334444445556666543 333 445568999999999999999999
Q ss_pred CCCcceEEecCCCCHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHh----CCCccCHHH
Q 030960 79 PGRLDRKIEFPLPDRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK----NRYVILPKD 148 (168)
Q Consensus 79 ~grf~~~i~~~~P~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~----~~~~i~~~d 148 (168)
|++|+.++.+++|+..+|.+|++..+.+ ..+++-++..|+||.+.|++-++.+|.+.+..+ +.+.+|.++
T Consensus 561 ~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~ 640 (952)
T KOG0735|consen 561 PLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKEL 640 (952)
T ss_pred ccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHH
Confidence 9999999999999999999999976663 235666999999999999999999999998833 345899999
Q ss_pred HHHHHHhhcCCCCCcccc
Q 030960 149 FEKGYRTNVKKPDTDFEF 166 (168)
Q Consensus 149 ~~~al~~~~p~~~~~~~~ 166 (168)
|.++++.+.|....++.+
T Consensus 641 f~ksL~~F~P~aLR~ik~ 658 (952)
T KOG0735|consen 641 FEKSLKDFVPLALRGIKL 658 (952)
T ss_pred HHHHHHhcChHHhhhccc
Confidence 999999999977665543
No 39
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=7.1e-18 Score=135.03 Aligned_cols=148 Identities=25% Similarity=0.387 Sum_probs=119.7
Q ss_pred HHHHHHHHHHcC-CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCC
Q 030960 2 VRDVFRLAKENA-PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (168)
Q Consensus 2 l~~iF~~a~~~~-p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (168)
|+++|++|+... .-++||||+|.++..|+. ...+......+|.||-.-. .++..++++.+||+|.++|.|+..
T Consensus 431 iH~lFDWakkS~rGLllFIDEADAFLceRnk--tymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D-- 504 (630)
T KOG0742|consen 431 IHKLFDWAKKSRRGLLLFIDEADAFLCERNK--TYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND-- 504 (630)
T ss_pred HHHHHHHHhhcccceEEEehhhHHHHHHhch--hhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--
Confidence 789999999766 567889999999988843 3455556688888887765 466689999999999999999999
Q ss_pred CcceEEecCCCCHHHHHHHHHhhcCC----------------------------CC----CHHHHHhCCCCCCHHHHHHH
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQMNLSD----------------------------EV----DLEDYVSRPDKISAAEIAAI 128 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~~~l~~----------------------------~~----~~~~la~~t~g~s~~di~~l 128 (168)
|||.+++||+|..++|..++..|+.+ .. -+.+.|..|+||||++|..|
T Consensus 505 Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakL 584 (630)
T KOG0742|consen 505 RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKL 584 (630)
T ss_pred hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHH
Confidence 99999999999999999999866651 11 24568899999999999999
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 129 CQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 129 ~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
+......+.-+...+++..-|.+.+..
T Consensus 585 va~vQAavYgsedcvLd~~lf~e~v~y 611 (630)
T KOG0742|consen 585 VASVQAAVYGSEDCVLDEALFDERVDY 611 (630)
T ss_pred HHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 987666666666667777777776653
No 40
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=9.1e-16 Score=130.39 Aligned_cols=152 Identities=19% Similarity=0.398 Sum_probs=122.8
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC-CCCCeEEEEecCCCCCCCccccCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-QTVNVKVIMATNRADTLDPALLRPG 80 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~v~vi~ttn~~~~ld~al~r~g 80 (168)
+..+|++|+..+|+|||+-++|.+..++.+ +.+.+..+.+..++. ++.+. +..+++||++|++.+.+|+.+++
T Consensus 479 l~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~-- 552 (953)
T KOG0736|consen 479 LQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS-- 552 (953)
T ss_pred HHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--
Confidence 568999999999999999999999965533 444445555665555 34333 56789999999999999999999
Q ss_pred CcceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHH---HHHHHhC------------
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAG---MHAVRKN------------ 140 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~---~~a~~~~------------ 140 (168)
.|-+.|.++.|+++||.+||++|+. .++.+..++.+|.|||.+|++.++.... ..-+++.
T Consensus 553 ~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~ 632 (953)
T KOG0736|consen 553 LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEG 632 (953)
T ss_pred hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhcccc
Confidence 9999999999999999999998876 4667889999999999999999998872 2222221
Q ss_pred -----CCccCHHHHHHHHHhhcCC
Q 030960 141 -----RYVILPKDFEKGYRTNVKK 159 (168)
Q Consensus 141 -----~~~i~~~d~~~al~~~~p~ 159 (168)
...++++||..++.+.+..
T Consensus 633 ~~~~~~~~l~~edf~kals~~~~~ 656 (953)
T KOG0736|consen 633 ELCAAGFLLTEEDFDKALSRLQKE 656 (953)
T ss_pred ccccccceecHHHHHHHHHHHHHh
Confidence 1579999999999977653
No 41
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.5e-14 Score=121.40 Aligned_cols=154 Identities=36% Similarity=0.559 Sum_probs=135.0
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|+.|+..+|+++++|++|.+.+.+.. .......+++.+++..++++.... +++++.||.+..+++++++|||
T Consensus 65 ~~~~~~~a~~~~~~ii~~d~~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~ 140 (494)
T COG0464 65 LRELFEEAEKLAPSIIFIDEIDALAPKRSS---DQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGR 140 (494)
T ss_pred HHHHHHHHHHhCCCeEeechhhhcccCccc---cccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccc
Confidence 468999999999999999999999998866 233344589999999999988444 9999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhh-----cCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC------CCccCHHHHH
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMN-----LSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN------RYVILPKDFE 150 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~-----l~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~------~~~i~~~d~~ 150 (168)
|+..++++.|+...|.++++.. +..+.++..++..+.||+++|+..++..+...+.++. ...++.+++.
T Consensus 141 ~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 220 (494)
T COG0464 141 FDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFE 220 (494)
T ss_pred cceeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHH
Confidence 9999999999999999998733 3346789999999999999999999999999888885 3458999999
Q ss_pred HHHHhhcCC
Q 030960 151 KGYRTNVKK 159 (168)
Q Consensus 151 ~al~~~~p~ 159 (168)
++++++.|+
T Consensus 221 ~~l~~~~~~ 229 (494)
T COG0464 221 EALKKVLPS 229 (494)
T ss_pred HHHHhcCcc
Confidence 999999885
No 42
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2e-14 Score=116.38 Aligned_cols=117 Identities=23% Similarity=0.321 Sum_probs=92.1
Q ss_pred cCCeEEEEcccccccccccCCCC---Ccc-hHHHHHHHHHHHhccCCCCCC--CeEEEEecCCCCCCCccccCCCCcceE
Q 030960 12 NAPAIIFIDEVDAIATARFDAQT---GAD-REVQRILMELLNQMDGFDQTV--NVKVIMATNRADTLDPALLRPGRLDRK 85 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~---~~~-~~~~~~~~~ll~~l~~~~~~~--~v~vi~ttn~~~~ld~al~r~grf~~~ 85 (168)
...+||+|+|||.-+.-++.... +.+ ....-.++.||+.+||+.+.. ..++|+|||+++.|||||+||||.|.+
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 34699999999998754322221 111 112356788999999998766 688999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHhhcCC---CCCHHHHHhCCCC--CCHHHHHHH
Q 030960 86 IEFPLPDRRQKRLVFQMNLSD---EVDLEDYVSRPDK--ISAAEIAAI 128 (168)
Q Consensus 86 i~~~~P~~~~R~~il~~~l~~---~~~~~~la~~t~g--~s~~di~~l 128 (168)
|+++..+.++-..++..|++- ..-++++....+| .||||+...
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHHHHH
Confidence 999999999999999999984 3345667766555 699999763
No 43
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1e-14 Score=113.87 Aligned_cols=152 Identities=18% Similarity=0.243 Sum_probs=116.6
Q ss_pred HHHHHHHHHHc-----CCeEEEEcccccccccccCCC-CCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcc
Q 030960 2 VRDVFRLAKEN-----APAIIFIDEVDAIATARFDAQ-TGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPA 75 (168)
Q Consensus 2 l~~iF~~a~~~-----~p~ii~iDe~D~l~~~~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~a 75 (168)
+.++|++.... .-..++|||+|+++..|.+.. .......-++++.+|++||++++.++|++++|+|-.+.||.|
T Consensus 234 V~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~A 313 (423)
T KOG0744|consen 234 VAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVA 313 (423)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHH
Confidence 55666666533 235667999999998885433 333344569999999999999999999999999999999999
Q ss_pred ccCCCCcceEEecCCCCHHHHHHHHHhhcCC-----------------------CCCHHHHHhC-CCCCCHHHHHHHHHH
Q 030960 76 LLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----------------------EVDLEDYVSR-PDKISAAEIAAICQE 131 (168)
Q Consensus 76 l~r~grf~~~i~~~~P~~~~R~~il~~~l~~-----------------------~~~~~~la~~-t~g~s~~di~~l~~~ 131 (168)
+.. |-|-+.++++|+...|.+|++.|+.+ +.....+.+. +.|+||+-|..+--.
T Consensus 314 fVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~L 391 (423)
T KOG0744|consen 314 FVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLL 391 (423)
T ss_pred hhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHH
Confidence 999 99999999999999999999977661 1122233333 489999999998776
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 132 AGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 132 a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
|-..-. ...+++.++|..|+-...
T Consensus 392 aha~y~--~~~~v~~~~fl~al~ea~ 415 (423)
T KOG0744|consen 392 AHAEYF--RTFTVDLSNFLLALLEAA 415 (423)
T ss_pred HHHhcc--CCCccChHHHHHHHHHHH
Confidence 533222 235799999999886543
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.54 E-value=3.4e-14 Score=98.29 Aligned_cols=85 Identities=46% Similarity=0.747 Sum_probs=72.1
Q ss_pred HHHHHHHHHHcC-CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCC-CCeEEEEecCCCCCCCccccCC
Q 030960 2 VRDVFRLAKENA-PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQT-VNVKVIMATNRADTLDPALLRP 79 (168)
Q Consensus 2 l~~iF~~a~~~~-p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~v~vi~ttn~~~~ld~al~r~ 79 (168)
++.+|+.|+..+ ||||+|||+|.+++.. ..........++..++..++..... +++++|+|||.++.++++++|
T Consensus 46 i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~- 121 (132)
T PF00004_consen 46 IRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR- 121 (132)
T ss_dssp HHHHHHHHHHTSTSEEEEEETGGGTSHHC---STSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-
T ss_pred cccccccccccccceeeeeccchhccccc---ccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-
Confidence 678999999998 9999999999999877 2234445568888999999987554 679999999999999999998
Q ss_pred CCcceEEecCC
Q 030960 80 GRLDRKIEFPL 90 (168)
Q Consensus 80 grf~~~i~~~~ 90 (168)
|||+..+++++
T Consensus 122 ~rf~~~i~~~~ 132 (132)
T PF00004_consen 122 SRFDRRIEFPL 132 (132)
T ss_dssp TTSEEEEEE-S
T ss_pred CCCcEEEEcCC
Confidence 89999999874
No 45
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.08 E-value=5.4e-10 Score=97.94 Aligned_cols=145 Identities=20% Similarity=0.204 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCC-----CCCCccc
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA-----DTLDPAL 76 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~-----~~ld~al 76 (168)
++.+|+.++...|+||||||+|.+++.+...++ +.. ..+.+...+. ...+.+|++||.. ...|+++
T Consensus 263 l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~--~~~---~~~~L~~~l~----~g~i~~IgaTt~~e~~~~~~~d~al 333 (731)
T TIGR02639 263 LKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG--SMD---ASNLLKPALS----SGKLRCIGSTTYEEYKNHFEKDRAL 333 (731)
T ss_pred HHHHHHHHhccCCeEEEEecHHHHhccCCCCCc--cHH---HHHHHHHHHh----CCCeEEEEecCHHHHHHHhhhhHHH
Confidence 678999998888999999999999876532221 111 1223333332 4579999999963 3689999
Q ss_pred cCCCCcceEEecCCCCHHHHHHHHHhhcC----------CCCCHHHHHhCCCCCCH-----HHHHHHHHHHHHHHHHh--
Q 030960 77 LRPGRLDRKIEFPLPDRRQKRLVFQMNLS----------DEVDLEDYVSRPDKISA-----AEIAAICQEAGMHAVRK-- 139 (168)
Q Consensus 77 ~r~grf~~~i~~~~P~~~~R~~il~~~l~----------~~~~~~~la~~t~g~s~-----~di~~l~~~a~~~a~~~-- 139 (168)
.| ||. .|+++.|+.+++.+|++.... .+-.+..++..+..|-+ .---.++.+|+.....+
T Consensus 334 ~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~ 410 (731)
T TIGR02639 334 SR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPK 410 (731)
T ss_pred HH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcc
Confidence 99 997 799999999999999984332 12234556666655543 33344555554322211
Q ss_pred --CCCccCHHHHHHHHHhhcC
Q 030960 140 --NRYVILPKDFEKGYRTNVK 158 (168)
Q Consensus 140 --~~~~i~~~d~~~al~~~~p 158 (168)
.+..|+.+|+..++.....
T Consensus 411 ~~~~~~v~~~~i~~~i~~~tg 431 (731)
T TIGR02639 411 AKKKANVSVKDIENVVAKMAH 431 (731)
T ss_pred cccccccCHHHHHHHHHHHhC
Confidence 1346999999999998753
No 46
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.07 E-value=4.3e-10 Score=98.36 Aligned_cols=145 Identities=19% Similarity=0.287 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC-----CCCccc
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPAL 76 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~al 76 (168)
++.+|..++..+|+||||||+|.+++.++.... .....+++.. .+ ....+.+|++|+.++ ..|+++
T Consensus 267 l~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g--~~d~~nlLkp---~L----~~g~i~vIgATt~~E~~~~~~~D~AL 337 (758)
T PRK11034 267 FKALLKQLEQDTNSILFIDEIHTIIGAGAASGG--QVDAANLIKP---LL----SSGKIRVIGSTTYQEFSNIFEKDRAL 337 (758)
T ss_pred HHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc--HHHHHHHHHH---HH----hCCCeEEEecCChHHHHHHhhccHHH
Confidence 467888888888999999999999876632221 1111222222 22 345799999999865 579999
Q ss_pred cCCCCcceEEecCCCCHHHHHHHHHhhcC-----CCCCHHH-----HHh---C--CCCCCHHHHHHHHHHHHHHHH----
Q 030960 77 LRPGRLDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLED-----YVS---R--PDKISAAEIAAICQEAGMHAV---- 137 (168)
Q Consensus 77 ~r~grf~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~-----la~---~--t~g~s~~di~~l~~~a~~~a~---- 137 (168)
.| ||+ .|.++.|+.+++.+|++.... .++.+.+ .+. + +..+.|.....++.+|+....
T Consensus 338 ~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~ 414 (758)
T PRK11034 338 AR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPV 414 (758)
T ss_pred Hh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcc
Confidence 99 996 799999999999999984332 2333322 222 2 345677788889988875432
Q ss_pred HhCCCccCHHHHHHHHHhhcC
Q 030960 138 RKNRYVILPKDFEKGYRTNVK 158 (168)
Q Consensus 138 ~~~~~~i~~~d~~~al~~~~p 158 (168)
...+..++.+|+.+.+.+...
T Consensus 415 ~~~~~~v~~~~i~~v~~~~tg 435 (758)
T PRK11034 415 SKRKKTVNVADIESVVARIAR 435 (758)
T ss_pred cccccccChhhHHHHHHHHhC
Confidence 223456888999999887654
No 47
>CHL00181 cbbX CbbX; Provisional
Probab=99.03 E-value=6.7e-09 Score=81.66 Aligned_cols=118 Identities=18% Similarity=0.254 Sum_probs=80.5
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC-----CCCccccCCCCcceEEe
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPALLRPGRLDRKIE 87 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~al~r~grf~~~i~ 87 (168)
.++||||||+|.++..++. .. ........++..|+. ...+++||++++... .++|++.+ ||+..|+
T Consensus 122 ~ggVLfIDE~~~l~~~~~~--~~---~~~e~~~~L~~~me~--~~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~ 192 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNE--RD---YGSEAIEILLQVMEN--QRDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVD 192 (287)
T ss_pred cCCEEEEEccchhccCCCc--cc---hHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEE
Confidence 4689999999999754321 11 123667778888874 334677777764311 34689999 9999999
Q ss_pred cCCCCHHHHHHHHHhhcCC---CC---CHHH----HHhC--CCCCC-HHHHHHHHHHHHHHHHHh
Q 030960 88 FPLPDRRQKRLVFQMNLSD---EV---DLED----YVSR--PDKIS-AAEIAAICQEAGMHAVRK 139 (168)
Q Consensus 88 ~~~P~~~~R~~il~~~l~~---~~---~~~~----la~~--t~g~s-~~di~~l~~~a~~~a~~~ 139 (168)
|++++.+++.+|++.++.. .+ .... +... .+.|. ++++.++++.+...-..+
T Consensus 193 F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r 257 (287)
T CHL00181 193 FPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANR 257 (287)
T ss_pred cCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999977652 11 1222 2222 34566 899999999986554443
No 48
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.97 E-value=6.6e-09 Score=91.67 Aligned_cols=138 Identities=25% Similarity=0.354 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC-----CC--------CCCCeEEEEecCCC
Q 030960 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-----FD--------QTVNVKVIMATNRA 69 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~--------~~~~v~vi~ttn~~ 69 (168)
...|..|....| ||+|||+|.+.+...+ . ..+.|+..+|. +. ..+++++|+|||.+
T Consensus 405 ~~~l~~~~~~~~-villDEidk~~~~~~~----~------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~ 473 (775)
T TIGR00763 405 IQGLKKAKTKNP-LFLLDEIDKIGSSFRG----D------PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSI 473 (775)
T ss_pred HHHHHHhCcCCC-EEEEechhhcCCccCC----C------HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCc
Confidence 456777766655 8899999999853211 1 12344554442 11 12578999999999
Q ss_pred CCCCccccCCCCcceEEecCCCCHHHHHHHHHhhcC-----------CCC-----CHHHHHh-CCCCCCHHHHHH----H
Q 030960 70 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS-----------DEV-----DLEDYVS-RPDKISAAEIAA----I 128 (168)
Q Consensus 70 ~~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~-----------~~~-----~~~~la~-~t~g~s~~di~~----l 128 (168)
+.+|+++++ ||+ .|+|+.|+.+++.+|++.++. ..+ .+..+++ .|..+..++|+. +
T Consensus 474 ~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~ 550 (775)
T TIGR00763 474 DTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKI 550 (775)
T ss_pred hhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHH
Confidence 999999999 995 789999999999999986652 111 2334444 344455555555 4
Q ss_pred HHHHHHHHHHhCC--------CccCHHHHHHHHH
Q 030960 129 CQEAGMHAVRKNR--------YVILPKDFEKGYR 154 (168)
Q Consensus 129 ~~~a~~~a~~~~~--------~~i~~~d~~~al~ 154 (168)
|+.++...+..+. ..++.+++...+.
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 551 CRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred HHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 5444443332221 3678887776654
No 49
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.95 E-value=1.5e-08 Score=81.82 Aligned_cols=141 Identities=22% Similarity=0.266 Sum_probs=96.5
Q ss_pred HHHHHHHH-HcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC-CCCCCeEEEEecCCCC---CCCcccc
Q 030960 3 RDVFRLAK-ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-DQTVNVKVIMATNRAD---TLDPALL 77 (168)
Q Consensus 3 ~~iF~~a~-~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~v~vi~ttn~~~---~ld~al~ 77 (168)
+.+++... ...|.||+|||+|.+.... . .++..++...+.. ....++.+|+++|.++ .+++.+.
T Consensus 118 ~~l~~~l~~~~~~~vlvIDE~d~L~~~~-------~----~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~ 186 (365)
T TIGR02928 118 RRLYKELNERGDSLIIVLDEIDYLVGDD-------D----DLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVK 186 (365)
T ss_pred HHHHHHHHhcCCeEEEEECchhhhccCC-------c----HHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHh
Confidence 34555444 3457899999999997211 0 2444555442211 2235788999999886 5888888
Q ss_pred CCCCcc-eEEecCCCCHHHHHHHHHhhcC----C-CCC---HHH---HHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 030960 78 RPGRLD-RKIEFPLPDRRQKRLVFQMNLS----D-EVD---LED---YVSRPDKISAAEIAAICQEAGMHAVRKNRYVIL 145 (168)
Q Consensus 78 r~grf~-~~i~~~~P~~~~R~~il~~~l~----~-~~~---~~~---la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~ 145 (168)
+ ||. ..++|++++.++..+|++..+. + .++ ++. ++..+.| .++..-.+|..|+..|..++...|+
T Consensus 187 s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it 263 (365)
T TIGR02928 187 S--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVT 263 (365)
T ss_pred c--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 7 775 6799999999999999986553 1 111 222 3334445 3455566888899889888888999
Q ss_pred HHHHHHHHHhhc
Q 030960 146 PKDFEKGYRTNV 157 (168)
Q Consensus 146 ~~d~~~al~~~~ 157 (168)
.+|+..|+....
T Consensus 264 ~~~v~~a~~~~~ 275 (365)
T TIGR02928 264 EDHVEKAQEKIE 275 (365)
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 50
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.86 E-value=3.7e-08 Score=80.35 Aligned_cols=132 Identities=17% Similarity=0.267 Sum_probs=94.1
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC---CCCccccCCCCcc-eEEec
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD---TLDPALLRPGRLD-RKIEF 88 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~---~ld~al~r~grf~-~~i~~ 88 (168)
.+.||+|||+|.+.... . ...+..++..++.... .++.+|+++|.++ .+++.+.+ ||. ..+.|
T Consensus 138 ~~~viviDE~d~l~~~~-----~-----~~~l~~l~~~~~~~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f 204 (394)
T PRK00411 138 RVLIVALDDINYLFEKE-----G-----NDVLYSLLRAHEEYPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYF 204 (394)
T ss_pred CEEEEEECCHhHhhccC-----C-----chHHHHHHHhhhccCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeec
Confidence 47899999999997211 0 1456666666655433 3788888888764 46777766 664 57899
Q ss_pred CCCCHHHHHHHHHhhcCC--------CCCHHHHHhCCCCC--CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 89 PLPDRRQKRLVFQMNLSD--------EVDLEDYVSRPDKI--SAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 89 ~~P~~~~R~~il~~~l~~--------~~~~~~la~~t~g~--s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
++++.++..+|++..+.. +..++.+++.+.+. ..+..-.+|..|+..|..++...|+.+|+.+|+....
T Consensus 205 ~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 205 PPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred CCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 999999999999865431 12345566666332 3455567888888888888888999999999998764
No 51
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.86 E-value=3.9e-08 Score=77.23 Aligned_cols=125 Identities=18% Similarity=0.306 Sum_probs=83.8
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCC--CC---CCCcccc
Q 030960 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR--AD---TLDPALL 77 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~--~~---~ld~al~ 77 (168)
+.+|+.| .+++|||||+|.+...+.. .. ....+.+.++..|+. ...+++||++++. ++ .++|++.
T Consensus 114 ~~~~~~a---~~gvL~iDEi~~L~~~~~~--~~---~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~~~~~~np~L~ 183 (284)
T TIGR02880 114 KEILKRA---MGGVLFIDEAYYLYRPDNE--RD---YGQEAIEILLQVMEN--QRDDLVVILAGYKDRMDSFFESNPGFS 183 (284)
T ss_pred HHHHHHc---cCcEEEEechhhhccCCCc--cc---hHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHHHHhhCHHHH
Confidence 3455554 4699999999998644311 11 223566778888874 3456777777653 23 2479999
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhcCC---CCC---HHHHHhC------CCCCC-HHHHHHHHHHHHHHHHHh
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNLSD---EVD---LEDYVSR------PDKIS-AAEIAAICQEAGMHAVRK 139 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l~~---~~~---~~~la~~------t~g~s-~~di~~l~~~a~~~a~~~ 139 (168)
+ ||+..|+||+++.+++..|++.++.. .++ +..+..+ -+.+. ++++.++++.+...-..+
T Consensus 184 s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r 256 (284)
T TIGR02880 184 S--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANR 256 (284)
T ss_pred h--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999999987763 111 1222222 13333 799999999986555443
No 52
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.85 E-value=3.2e-08 Score=79.15 Aligned_cols=98 Identities=16% Similarity=0.064 Sum_probs=80.1
Q ss_pred CCeEEEEecCCCCCCCccccCCCCcceEEecCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHH
Q 030960 58 VNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQE 131 (168)
Q Consensus 58 ~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~ 131 (168)
+++.+|++||.+..+++++++ ||+..+.+++|+.+++.++++.... ++-.+..+++.+.| +++.+..+++.
T Consensus 149 ~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~ 225 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRR 225 (328)
T ss_pred CCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHH
Confidence 347889999999999999998 9999999999999999999985544 12236778888887 45888888888
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHhhcC
Q 030960 132 AGMHAVRKNRYVILPKDFEKGYRTNVK 158 (168)
Q Consensus 132 a~~~a~~~~~~~i~~~d~~~al~~~~p 158 (168)
+...+...+...|+.+++..++.....
T Consensus 226 ~~~~a~~~~~~~I~~~~v~~~l~~~~~ 252 (328)
T PRK00080 226 VRDFAQVKGDGVITKEIADKALDMLGV 252 (328)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 877777666678999999999976543
No 53
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.84 E-value=3.4e-08 Score=77.96 Aligned_cols=96 Identities=11% Similarity=0.043 Sum_probs=77.7
Q ss_pred CCeEEEEecCCCCCCCccccCCCCcceEEecCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHH
Q 030960 58 VNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQE 131 (168)
Q Consensus 58 ~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~ 131 (168)
+++.+|++||++..+++++++ ||...+.+++|+.+++.++++.... ++-.++.+++.+.|+ ++.+..++..
T Consensus 128 ~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~~ll~~ 204 (305)
T TIGR00635 128 PPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIANRLLRR 204 (305)
T ss_pred CCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 348899999999999999999 9999999999999999999985543 122456788888884 4777888888
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 132 AGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 132 a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
+...+...+...++.+++..++...
T Consensus 205 ~~~~a~~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 205 VRDFAQVRGQKIINRDIALKALEML 229 (305)
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 7766666666779999999888763
No 54
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.83 E-value=1.1e-07 Score=73.85 Aligned_cols=124 Identities=18% Similarity=0.193 Sum_probs=80.1
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCC-----CCCCcccc
Q 030960 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA-----DTLDPALL 77 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~-----~~ld~al~ 77 (168)
+++|+.| .++||||||+|.+.... ........+..++..++.. ...+++|+++... ..++|++.
T Consensus 98 ~~~~~~a---~~~VL~IDE~~~L~~~~------~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~~~~~~~~~p~L~ 166 (261)
T TIGR02881 98 REVIKKA---LGGVLFIDEAYSLARGG------EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDEMDYFLSLNPGLR 166 (261)
T ss_pred HHHHHhc---cCCEEEEechhhhccCC------ccchHHHHHHHHHHHHhcc--CCCEEEEecCCcchhHHHHhcChHHH
Confidence 4566555 36899999999996311 1112235677788888753 3445555544321 24688999
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhcCCC-C-----CHHHHHhC---------CCCCCHHHHHHHHHHHHHHHHHh
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNLSDE-V-----DLEDYVSR---------PDKISAAEIAAICQEAGMHAVRK 139 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l~~~-~-----~~~~la~~---------t~g~s~~di~~l~~~a~~~a~~~ 139 (168)
+ ||+..++|+.++.+++.+|++.++... . .+..+++. ...-.++.+.+++..|......+
T Consensus 167 s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r 241 (261)
T TIGR02881 167 S--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVR 241 (261)
T ss_pred h--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999776521 1 12233221 12245788888888876555443
No 55
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.77 E-value=4.8e-08 Score=82.90 Aligned_cols=91 Identities=22% Similarity=0.138 Sum_probs=74.3
Q ss_pred eEEEEecCCCCCCCccccCCCCcceEEecCCCCHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHH
Q 030960 60 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAG 133 (168)
Q Consensus 60 v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~ 133 (168)
.++++||+.|+.+++++++ |+. .+.+++++.+++.++++..+.. +..++.++.++. +++++.++++.|+
T Consensus 235 rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa 309 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAA 309 (531)
T ss_pred EEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHH
Confidence 4566788899999999999 884 6889999999999999976652 122445666553 7899999999999
Q ss_pred HHHHHhCCCccCHHHHHHHHHh
Q 030960 134 MHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 134 ~~a~~~~~~~i~~~d~~~al~~ 155 (168)
..+..+++..|+.+|+..++..
T Consensus 310 ~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 310 GIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred HHHhhCCCcEEcHHHHHHHhCC
Confidence 9888888888999999999973
No 56
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.75 E-value=5.7e-08 Score=86.40 Aligned_cols=139 Identities=21% Similarity=0.252 Sum_probs=88.6
Q ss_pred HHHHHHHHHH-cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC-----CCCcc
Q 030960 2 VRDVFRLAKE-NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPA 75 (168)
Q Consensus 2 l~~iF~~a~~-~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~a 75 (168)
++.+|+.++. ..++||||||++.+.+.++.....+ ..+.|+..+ ..+.+.+||+|+..+ .+|+|
T Consensus 268 lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d------~~n~Lkp~l----~~G~l~~IgaTT~~e~~~~~~~d~A 337 (852)
T TIGR03345 268 LKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGD------AANLLKPAL----ARGELRTIAATTWAEYKKYFEKDPA 337 (852)
T ss_pred HHHHHHHHHhcCCCeEEEEeChHHhccCCCcccccc------HHHHhhHHh----hCCCeEEEEecCHHHHhhhhhccHH
Confidence 5778888875 4689999999999987653322111 112233333 355799999998643 48999
Q ss_pred ccCCCCcceEEecCCCCHHHHHHHHHhh---cC-------CCCCHHHHHhCCCCCC-----HHHHHHHHHHHHHHH-HHh
Q 030960 76 LLRPGRLDRKIEFPLPDRRQKRLVFQMN---LS-------DEVDLEDYVSRPDKIS-----AAEIAAICQEAGMHA-VRK 139 (168)
Q Consensus 76 l~r~grf~~~i~~~~P~~~~R~~il~~~---l~-------~~~~~~~la~~t~g~s-----~~di~~l~~~a~~~a-~~~ 139 (168)
|.| ||. .|.++.|+.+++.+||+.. +. .+..+..++..+.+|- |.---.++.+|+... +..
T Consensus 338 L~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~ 414 (852)
T TIGR03345 338 LTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQ 414 (852)
T ss_pred HHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhc
Confidence 999 996 7999999999999997622 22 1334556677776654 333444556654333 333
Q ss_pred CCCccCHHHHHHHH
Q 030960 140 NRYVILPKDFEKGY 153 (168)
Q Consensus 140 ~~~~i~~~d~~~al 153 (168)
...+...+++.+.+
T Consensus 415 ~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 415 NATPAALEDLRRRI 428 (852)
T ss_pred cCCchhHHHHHHHH
Confidence 34444444444443
No 57
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.75 E-value=1.2e-07 Score=78.01 Aligned_cols=129 Identities=13% Similarity=0.168 Sum_probs=87.1
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC---CCccccCCCCcc--eEEe
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT---LDPALLRPGRLD--RKIE 87 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~---ld~al~r~grf~--~~i~ 87 (168)
.+.+|+|||+|.+.+.+ .....++..++.+...+..+||+++..|.. +++.+.+ ||. ..+.
T Consensus 199 ~~dlLiiDDi~~l~~~~------------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~ 264 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKE------------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVD 264 (405)
T ss_pred hCCEEEEehhhhhcCCH------------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEE
Confidence 36899999999986432 111123333333222334556666666665 5578888 996 4799
Q ss_pred cCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 88 FPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 88 ~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
+++|+.++|..|++.... ++-.++.+|++..| +.++|+.+++.....+... +..||.+.+.+++....
T Consensus 265 i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~-~~~it~~~~~~~L~~~~ 338 (405)
T TIGR00362 265 IEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLT-GKPITLELAKEALKDLL 338 (405)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHhc
Confidence 999999999999996654 23345668877654 7788998888876666543 35688888888887653
No 58
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.70 E-value=1.2e-07 Score=78.94 Aligned_cols=129 Identities=12% Similarity=0.175 Sum_probs=89.3
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC---CCccccCCCCcc--eEEe
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT---LDPALLRPGRLD--RKIE 87 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~---ld~al~r~grf~--~~i~ 87 (168)
.+.+|+|||+|.+.+++ .....++..++.+....+.++|+++..|.. +++.+.+ ||. ..+.
T Consensus 211 ~~dlLiiDDi~~l~~~~------------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~ 276 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKE------------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVD 276 (450)
T ss_pred cCCEEEEehhhhhcCCH------------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEE
Confidence 47899999999985432 111223333333222334456666666655 6788988 996 5899
Q ss_pred cCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 88 FPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 88 ~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
+.+|+.++|..|++.... ++..++.+|..+.| +.++|..+++.....+...+ ..||.+.+.++++...
T Consensus 277 i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 277 IEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 999999999999996654 22346677877755 78888888888766665443 4689999999988763
No 59
>PRK06893 DNA replication initiation factor; Validated
Probab=98.52 E-value=4.3e-07 Score=69.16 Aligned_cols=128 Identities=13% Similarity=0.125 Sum_probs=83.5
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCC-CeEEEEecCCCCCCC---ccccCCCCcceEEec
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTV-NVKVIMATNRADTLD---PALLRPGRLDRKIEF 88 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~v~vi~ttn~~~~ld---~al~r~grf~~~i~~ 88 (168)
++.+|+|||++.+.+++ . .+..+-.+++.+ ...+ .+++++++..|..++ +.+.+..+++..+.+
T Consensus 91 ~~dlLilDDi~~~~~~~-----~----~~~~l~~l~n~~---~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l 158 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNE-----E----WELAIFDLFNRI---KEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQL 158 (229)
T ss_pred cCCEEEEeChhhhcCCh-----H----HHHHHHHHHHHH---HHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeC
Confidence 46899999999886432 1 112233333333 2233 355666667787776 788884456689999
Q ss_pred CCCCHHHHHHHHHhhcC-C-----CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 89 PLPDRRQKRLVFQMNLS-D-----EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 89 ~~P~~~~R~~il~~~l~-~-----~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
++|+.++|.++++.... . +..++.|+.+.+| +.+.+..+++.-...+.. .++.||...+.+++.
T Consensus 159 ~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~-~~~~it~~~v~~~L~ 228 (229)
T PRK06893 159 NDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQ-AQRKLTIPFVKEILG 228 (229)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHhc
Confidence 99999999999985543 2 2334567777754 677777777765434443 334799888887763
No 60
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.51 E-value=9.1e-07 Score=78.07 Aligned_cols=137 Identities=18% Similarity=0.269 Sum_probs=88.7
Q ss_pred HHHHHHHHH--HcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCC---CCCCCccc
Q 030960 2 VRDVFRLAK--ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR---ADTLDPAL 76 (168)
Q Consensus 2 l~~iF~~a~--~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~---~~~ld~al 76 (168)
+..+|.... ...++||+|||+|.|.... +.++-.|..+.. ....++.|||++|. +..+++.+
T Consensus 856 LerLF~~L~k~~r~v~IIILDEID~L~kK~-----------QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRL 922 (1164)
T PTZ00112 856 LDRLFNQNKKDNRNVSILIIDEIDYLITKT-----------QKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRC 922 (1164)
T ss_pred HHHHHhhhhcccccceEEEeehHhhhCccH-----------HHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhh
Confidence 455666552 2236799999999997421 244555555443 23457999999986 66778888
Q ss_pred cCCCCcce-EEecCCCCHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHH---HHHHHHHHHhCCCccCH
Q 030960 77 LRPGRLDR-KIEFPLPDRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAIC---QEAGMHAVRKNRYVILP 146 (168)
Q Consensus 77 ~r~grf~~-~i~~~~P~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~---~~a~~~a~~~~~~~i~~ 146 (168)
.+ ||.. .+.|++++.++..+||+..+.. +..+..+|.... -..+|+..++ +.|+.. .+...|+.
T Consensus 923 RS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA-q~SGDARKALDILRrAgEi---kegskVT~ 996 (1164)
T PTZ00112 923 RS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA-NVSGDIRKALQICRKAFEN---KRGQKIVP 996 (1164)
T ss_pred hh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh-hcCCHHHHHHHHHHHHHhh---cCCCccCH
Confidence 88 7764 4888999999999999865542 222444555333 2335665544 444432 23447999
Q ss_pred HHHHHHHHhhc
Q 030960 147 KDFEKGYRTNV 157 (168)
Q Consensus 147 ~d~~~al~~~~ 157 (168)
+|+.+|+.+..
T Consensus 997 eHVrkAleeiE 1007 (1164)
T PTZ00112 997 RDITEATNQLF 1007 (1164)
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 61
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.47 E-value=7.6e-07 Score=74.02 Aligned_cols=129 Identities=12% Similarity=0.128 Sum_probs=85.7
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC---CCccccCCCCcc--eEEe
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT---LDPALLRPGRLD--RKIE 87 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~---ld~al~r~grf~--~~i~ 87 (168)
+|.+|+|||++.+.+... ....+...++.+...++.+||++...|.. +.+.+.+ ||. ..+.
T Consensus 194 ~~dvLlIDDi~~l~~~~~------------~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~ 259 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTG------------VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAK 259 (440)
T ss_pred cCCEEEEechhhhcCcHH------------HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEe
Confidence 689999999998864320 11122222332223334556666667765 4567887 774 6778
Q ss_pred cCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 88 FPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 88 ~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
+.+|+.+.|.+|++.... ++..++.||+...| +.++|+.++..-...+...+ .++|.+...++++...
T Consensus 260 i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~~-~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 260 LEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTG-EEVDLKEAILLLKDFI 333 (440)
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 999999999999986654 12345667887765 78888888887655554443 4688888888887653
No 62
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=1.6e-06 Score=71.04 Aligned_cols=108 Identities=14% Similarity=0.183 Sum_probs=77.1
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcccc
Q 030960 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 2 l~~iF~~a~~~----~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (168)
|+++++.+... ...|++|||+|.+.. ...+.|+..|+. ..+++++|.+|++++.++|+++
T Consensus 102 iR~l~~~~~~~p~~~~~kViiIDead~m~~--------------~aanaLLk~LEe--p~~~~~fIL~a~~~~~llpTIr 165 (394)
T PRK07940 102 VRELVTIAARRPSTGRWRIVVIEDADRLTE--------------RAANALLKAVEE--PPPRTVWLLCAPSPEDVLPTIR 165 (394)
T ss_pred HHHHHHHHHhCcccCCcEEEEEechhhcCH--------------HHHHHHHHHhhc--CCCCCeEEEEECChHHChHHHH
Confidence 57788777643 245999999999832 234667888874 3445556666666999999999
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhcC-CCCCHHHHHhCCCCCCHHHHHHH
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNLS-DEVDLEDYVSRPDKISAAEIAAI 128 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l~-~~~~~~~la~~t~g~s~~di~~l 128 (168)
+ |+ ..+.|++|+.++..+.+..... +......++..+.|..+..+.-+
T Consensus 166 S--Rc-~~i~f~~~~~~~i~~~L~~~~~~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 166 S--RC-RHVALRTPSVEAVAEVLVRRDGVDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred h--hC-eEEECCCCCHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 9 87 6999999999999888864322 22335568888889877665443
No 63
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.42 E-value=5.7e-07 Score=80.27 Aligned_cols=88 Identities=19% Similarity=0.251 Sum_probs=64.5
Q ss_pred HHHHHHHHH-HcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC-----CCCcc
Q 030960 2 VRDVFRLAK-ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPA 75 (168)
Q Consensus 2 l~~iF~~a~-~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~a 75 (168)
++.+|+.+. ...|+||||||++.+.+.+++.++ . ....+ |... -..+.+.+||+|+..+ .+|++
T Consensus 259 lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~-~--d~~~~---lkp~----l~~g~l~~IgaTt~~e~r~~~~~d~a 328 (857)
T PRK10865 259 LKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA-M--DAGNM---LKPA----LARGELHCVGATTLDEYRQYIEKDAA 328 (857)
T ss_pred HHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc-h--hHHHH---hcch----hhcCCCeEEEcCCCHHHHHHhhhcHH
Confidence 567887754 356999999999999876532221 1 11122 2222 2456899999999877 48999
Q ss_pred ccCCCCcceEEecCCCCHHHHHHHHHh
Q 030960 76 LLRPGRLDRKIEFPLPDRRQKRLVFQM 102 (168)
Q Consensus 76 l~r~grf~~~i~~~~P~~~~R~~il~~ 102 (168)
+.| ||+ .|.++.|+.+++..|++.
T Consensus 329 l~r--Rf~-~i~v~eP~~~~~~~iL~~ 352 (857)
T PRK10865 329 LER--RFQ-KVFVAEPSVEDTIAILRG 352 (857)
T ss_pred HHh--hCC-EEEeCCCCHHHHHHHHHH
Confidence 999 998 588999999999999973
No 64
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.41 E-value=5.1e-07 Score=80.61 Aligned_cols=88 Identities=19% Similarity=0.182 Sum_probs=63.6
Q ss_pred HHHHHHHHHHc-CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC-----CCCcc
Q 030960 2 VRDVFRLAKEN-APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPA 75 (168)
Q Consensus 2 l~~iF~~a~~~-~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~a 75 (168)
++.+|+.+... .|+||||||++.+++.+...+. . ...+.+... .....+.+||+|+..+ .+|++
T Consensus 254 l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~---~---d~~~~Lk~~----l~~g~i~~IgaTt~~e~r~~~~~d~a 323 (852)
T TIGR03346 254 LKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA---M---DAGNMLKPA----LARGELHCIGATTLDEYRKYIEKDAA 323 (852)
T ss_pred HHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch---h---HHHHHhchh----hhcCceEEEEeCcHHHHHHHhhcCHH
Confidence 56778877654 5999999999999865422211 1 122222222 2455799999999874 58999
Q ss_pred ccCCCCcceEEecCCCCHHHHHHHHHh
Q 030960 76 LLRPGRLDRKIEFPLPDRRQKRLVFQM 102 (168)
Q Consensus 76 l~r~grf~~~i~~~~P~~~~R~~il~~ 102 (168)
+.| ||. .|.++.|+.+++..|++.
T Consensus 324 l~r--Rf~-~i~v~~p~~~~~~~iL~~ 347 (852)
T TIGR03346 324 LER--RFQ-PVFVDEPTVEDTISILRG 347 (852)
T ss_pred HHh--cCC-EEEeCCCCHHHHHHHHHH
Confidence 999 996 589999999999999984
No 65
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=4.7e-06 Score=67.67 Aligned_cols=117 Identities=16% Similarity=0.177 Sum_probs=84.8
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCH
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~ 93 (168)
..|++|||+|.+-. ...+.++..++. ....+.+|.+|+.++.+++++++ |+ ..+.+++|+.
T Consensus 120 ~kviIIDEa~~l~~--------------~a~naLLk~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~ 180 (363)
T PRK14961 120 FKVYLIDEVHMLSR--------------HSFNALLKTLEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISE 180 (363)
T ss_pred ceEEEEEChhhcCH--------------HHHHHHHHHHhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCH
Confidence 45999999998731 334567777764 34466677778889999999988 87 6789999999
Q ss_pred HHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 94 RQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 94 ~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
++..++++..+.. +..+..++..+.| +++++.+++..+... +...++.+++.+++.
T Consensus 181 ~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 181 EKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 9999988864432 2234557777766 788888888776533 345688888877664
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=6.3e-06 Score=69.56 Aligned_cols=132 Identities=15% Similarity=0.246 Sum_probs=95.0
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcccc
Q 030960 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 2 l~~iF~~a~~~----~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (168)
++.+.+.+... ..-|++|||+|.+.. ...+.|+..++. ....+++|.+|+.++.+++.++
T Consensus 113 Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~--------------~a~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~ 176 (507)
T PRK06645 113 IRRIIESAEYKPLQGKHKIFIIDEVHMLSK--------------GAFNALLKTLEE--PPPHIIFIFATTEVQKIPATII 176 (507)
T ss_pred HHHHHHHHHhccccCCcEEEEEEChhhcCH--------------HHHHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHH
Confidence 45666666533 246999999998731 345667777763 4456777777888999999999
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhcCC---CC---CHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNLSD---EV---DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l~~---~~---~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 151 (168)
+ |+ ..+.|.+++.++...+++..+.. .+ .+..++..++| +.+++.+++..++..+-.. ...||.+++.+
T Consensus 177 S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~ 251 (507)
T PRK06645 177 S--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARDAVSILDQAASMSAKS-DNIISPQVINQ 251 (507)
T ss_pred h--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHH
Confidence 8 77 57899999999999999866642 12 35678888876 8999999998886554321 23578777776
Q ss_pred HHH
Q 030960 152 GYR 154 (168)
Q Consensus 152 al~ 154 (168)
.+.
T Consensus 252 llg 254 (507)
T PRK06645 252 MLG 254 (507)
T ss_pred HHC
Confidence 654
No 67
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.34 E-value=5.5e-06 Score=66.64 Aligned_cols=129 Identities=17% Similarity=0.209 Sum_probs=87.9
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcccc
Q 030960 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 2 l~~iF~~a~~~----~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (168)
++.+++.+... ..-||+|||+|.+.. ...+.++..++. ....+++|.+|++++.+.++++
T Consensus 102 ~~~l~~~~~~~p~~~~~~vviidea~~l~~--------------~~~~~Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~ 165 (355)
T TIGR02397 102 IREILDNVKYAPSSGKYKVYIIDEVHMLSK--------------SAFNALLKTLEE--PPEHVVFILATTEPHKIPATIL 165 (355)
T ss_pred HHHHHHHHhcCcccCCceEEEEeChhhcCH--------------HHHHHHHHHHhC--CccceeEEEEeCCHHHHHHHHH
Confidence 45667666533 135999999998731 345667777764 3346777778889999999999
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhcCC---CC---CHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNLSD---EV---DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l~~---~~---~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 151 (168)
+ |+ ..+++++|+..+...+++..+.. .+ .+..+++.+.| +++.+.+.++.+...+ ...|+.+++.+
T Consensus 166 s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~ 237 (355)
T TIGR02397 166 S--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLRDALSLLDQLISFG----NGNITYEDVNE 237 (355)
T ss_pred h--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHH
Confidence 8 87 47899999999999999865542 12 34456666655 7777777776655432 23477777766
Q ss_pred HHH
Q 030960 152 GYR 154 (168)
Q Consensus 152 al~ 154 (168)
++.
T Consensus 238 ~~~ 240 (355)
T TIGR02397 238 LLG 240 (355)
T ss_pred HhC
Confidence 553
No 68
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.33 E-value=3.1e-06 Score=70.57 Aligned_cols=131 Identities=11% Similarity=0.186 Sum_probs=87.1
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC---CCccccCCCCcc--eEE
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT---LDPALLRPGRLD--RKI 86 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~---ld~al~r~grf~--~~i 86 (168)
..+.+|+|||++.+.++. .....+-.+++.+. ...+.+|+.+...|.. +++.+.+ ||. ..+
T Consensus 205 ~~~dvLiIDDiq~l~~k~---------~~~e~lf~l~N~~~---~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~ 270 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKE---------KTNEIFFTIFNNFI---ENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSI 270 (450)
T ss_pred ccCCEEEEeccccccCCH---------HHHHHHHHHHHHHH---HcCCcEEEECCCCHHHHhhccHHHHH--HHhCCcee
Confidence 357899999999885332 11123333333332 2323334443334443 4678888 885 677
Q ss_pred ecCCCCHHHHHHHHHhhcCC--------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC-CCccCHHHHHHHHHhhc
Q 030960 87 EFPLPDRRQKRLVFQMNLSD--------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN-RYVILPKDFEKGYRTNV 157 (168)
Q Consensus 87 ~~~~P~~~~R~~il~~~l~~--------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~-~~~i~~~d~~~al~~~~ 157 (168)
.+.+|+.++|.+|++..+.. +-.+..|+..+.| +++.+..+++.....+.... ...|+.+.+.++++...
T Consensus 271 ~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~ 349 (450)
T PRK14087 271 AIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIP 349 (450)
T ss_pred ccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhcc
Confidence 88999999999999866542 1234457777766 88999999998876665542 36799999999998764
No 69
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.32 E-value=4.4e-06 Score=74.45 Aligned_cols=121 Identities=22% Similarity=0.236 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC-----CCCccc
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPAL 76 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~al 76 (168)
|+.+|+.++...|+||||||+|.+++..+..+. . .+.+.|...+ ..+.+.+||+|+..+ ..|+++
T Consensus 260 l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~-~-----~~a~lLkp~l----~rg~l~~IgaTt~~ey~~~ie~D~aL 329 (821)
T CHL00095 260 LKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA-I-----DAANILKPAL----ARGELQCIGATTLDEYRKHIEKDPAL 329 (821)
T ss_pred HHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc-c-----cHHHHhHHHH----hCCCcEEEEeCCHHHHHHHHhcCHHH
Confidence 578999998888999999999999876532221 1 1122222223 245788999998764 589999
Q ss_pred cCCCCcceEEecCCCCHHHHHHHHHhhc-------C---CCCCHHHHHhCCCCCCH-----HHHHHHHHHHHHH
Q 030960 77 LRPGRLDRKIEFPLPDRRQKRLVFQMNL-------S---DEVDLEDYVSRPDKISA-----AEIAAICQEAGMH 135 (168)
Q Consensus 77 ~r~grf~~~i~~~~P~~~~R~~il~~~l-------~---~~~~~~~la~~t~g~s~-----~di~~l~~~a~~~ 135 (168)
.+ ||.. +.++.|+.++...|++... . ++-.+..++..+.||.+ .---.++.+|+..
T Consensus 330 ~r--Rf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~ 400 (821)
T CHL00095 330 ER--RFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSR 400 (821)
T ss_pred Hh--cceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHH
Confidence 99 9974 7999999999999987322 1 12234556666666543 4344555665443
No 70
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.31 E-value=5.6e-06 Score=70.92 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=83.8
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCC-C---CCCCccccCCCCcc--eEE
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR-A---DTLDPALLRPGRLD--RKI 86 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~-~---~~ld~al~r~grf~--~~i 86 (168)
++.+|+|||++.+.++. .. +..+-++++.+ ...++-+|| |+|. | ..+++.|++ ||. ..+
T Consensus 377 ~~DLLlIDDIq~l~gke-----~t----qeeLF~l~N~l---~e~gk~III-TSd~~P~eL~~l~~rL~S--Rf~~GLvv 441 (617)
T PRK14086 377 EMDILLVDDIQFLEDKE-----ST----QEEFFHTFNTL---HNANKQIVL-SSDRPPKQLVTLEDRLRN--RFEWGLIT 441 (617)
T ss_pred cCCEEEEehhccccCCH-----HH----HHHHHHHHHHH---HhcCCCEEE-ecCCChHhhhhccHHHHh--hhhcCceE
Confidence 47999999999986433 11 12222333333 222333344 5554 3 357888999 884 666
Q ss_pred ecCCCCHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcC
Q 030960 87 EFPLPDRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158 (168)
Q Consensus 87 ~~~~P~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 158 (168)
.+..|+.+.|.+||+..... +-.+..|+.+..+ +.++|+.++..-...+... ...|+.+...+.++.+.+
T Consensus 442 ~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~-~~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 442 DVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLN-RQPVDLGLTEIVLRDLIP 517 (617)
T ss_pred EcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhhc
Confidence 99999999999999966552 2235567777654 6788888888765555443 345788888888876654
No 71
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.28 E-value=1.1e-05 Score=71.51 Aligned_cols=127 Identities=14% Similarity=0.203 Sum_probs=83.5
Q ss_pred eEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC---------C----CCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG---------F----DQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 15 ~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~----~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
.||+|||+|.+.....+ ...+.|+..+|. + -.-++|++|+|||.. .||++++. |
T Consensus 418 ~villDEidk~~~~~~g----------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R 484 (784)
T PRK10787 418 PLFLLDEIDKMSSDMRG----------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--R 484 (784)
T ss_pred CEEEEEChhhcccccCC----------CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--c
Confidence 48999999998643211 112345555552 1 122679999999988 59999999 9
Q ss_pred cceEEecCCCCHHHHHHHHHhhcCC-----------CC-----CHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHh----C
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLSD-----------EV-----DLEDYVS-RPDKISAAEIAAICQEAGMHAVRK----N 140 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~~-----------~~-----~~~~la~-~t~g~s~~di~~l~~~a~~~a~~~----~ 140 (168)
+. .|.+..++.++..+|.+.++.+ .+ -+..+++ .+..+-.+.|++.++..+..++.+ +
T Consensus 485 ~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~ 563 (784)
T PRK10787 485 ME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDK 563 (784)
T ss_pred ee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 95 7899999999999999877741 11 1333443 344555577777666655444433 1
Q ss_pred ---CCccCHHHHHHHHHh
Q 030960 141 ---RYVILPKDFEKGYRT 155 (168)
Q Consensus 141 ---~~~i~~~d~~~al~~ 155 (168)
+..|+.+++.+.+..
T Consensus 564 ~~~~v~v~~~~~~~~lg~ 581 (784)
T PRK10787 564 SLKHIEINGDNLHDYLGV 581 (784)
T ss_pred CCceeeecHHHHHHHhCC
Confidence 236888888887753
No 72
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.2e-05 Score=67.36 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=88.0
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcccc
Q 030960 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 2 l~~iF~~a~~~----~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (168)
++.+.+.+... ...||+|||+|.+.. ...+.|+..++. ..+.+++|++|+++..++++++
T Consensus 102 iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~--------------~a~~~LLk~LE~--p~~~vv~Ilattn~~kl~~~L~ 165 (472)
T PRK14962 102 IRKIRDAVGYRPMEGKYKVYIIDEVHMLTK--------------EAFNALLKTLEE--PPSHVVFVLATTNLEKVPPTII 165 (472)
T ss_pred HHHHHHHHhhChhcCCeEEEEEEChHHhHH--------------HHHHHHHHHHHh--CCCcEEEEEEeCChHhhhHHHh
Confidence 35555555432 246999999998831 234567777764 3346777777778999999999
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 151 (168)
+ |+. .+.|.+|+.++...+++..... +..++.|+..+.| +.+++.+.+..+... ....|+.+++.+
T Consensus 166 S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR~aln~Le~l~~~----~~~~It~e~V~~ 237 (472)
T PRK14962 166 S--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLRDALTMLEQVWKF----SEGKITLETVHE 237 (472)
T ss_pred c--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHH
Confidence 9 874 8999999999998888765431 2235667776654 556666666554332 122488888888
Q ss_pred HHHh
Q 030960 152 GYRT 155 (168)
Q Consensus 152 al~~ 155 (168)
++..
T Consensus 238 ~l~~ 241 (472)
T PRK14962 238 ALGL 241 (472)
T ss_pred HHcC
Confidence 7754
No 73
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.25 E-value=4.6e-06 Score=62.88 Aligned_cols=124 Identities=16% Similarity=0.181 Sum_probs=79.9
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC---ccccCCCCc--ceEEec
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD---PALLRPGRL--DRKIEF 88 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld---~al~r~grf--~~~i~~ 88 (168)
+.+|+|||+|.+.... . ....+..++..+. ..+..+|+.++..+..++ +.+.+ |+ ...+.+
T Consensus 91 ~~lLvIDdi~~l~~~~-----~----~~~~L~~~l~~~~---~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l 156 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQP-----E----WQEALFHLYNRVR---EAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQL 156 (226)
T ss_pred CCEEEEeChhhhcCCh-----H----HHHHHHHHHHHHH---HcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEec
Confidence 5699999999874221 0 0122333333332 222344554444554443 66776 66 578999
Q ss_pred CCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 89 PLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 89 ~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
++|+.+++..+++.+.. ++-.+..+++. -+-+++++.++++.+...+.+.+ ..|+.+...+.+
T Consensus 157 ~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 157 PPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 99999999999986543 12235567774 56689999999998876665544 579888887765
No 74
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.24 E-value=6.1e-06 Score=68.73 Aligned_cols=130 Identities=12% Similarity=0.199 Sum_probs=80.6
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC---CCCccccCCCCcc--eEEe
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD---TLDPALLRPGRLD--RKIE 87 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~---~ld~al~r~grf~--~~i~ 87 (168)
++.+|+|||++.+.+.. .. +..+-.+++.+ ....+.+|++++..|. .+++.+++ ||. ..+.
T Consensus 202 ~~dvLiIDDiq~l~~k~-----~~----qeelf~l~N~l---~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~ 267 (445)
T PRK12422 202 NVDALFIEDIEVFSGKG-----AT----QEEFFHTFNSL---HTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIP 267 (445)
T ss_pred cCCEEEEcchhhhcCCh-----hh----HHHHHHHHHHH---HHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEe
Confidence 57899999999875322 11 12222233222 1223444555544454 56789999 995 8899
Q ss_pred cCCCCHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHH-HHHh-CCCccCHHHHHHHHHhhc
Q 030960 88 FPLPDRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMH-AVRK-NRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 88 ~~~P~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~-a~~~-~~~~i~~~d~~~al~~~~ 157 (168)
+.+|+.++|..|++..... +-.++.++....| ..+.|...++..+.. +... ...+++.++..++++...
T Consensus 268 l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 268 LHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVL 344 (445)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhh
Confidence 9999999999999865542 2234456665543 566777766665322 2221 234688899999888753
No 75
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.22 E-value=3e-05 Score=59.96 Aligned_cols=132 Identities=16% Similarity=0.169 Sum_probs=87.6
Q ss_pred HHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC---CCC----ccccCCCC
Q 030960 9 AKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD---TLD----PALLRPGR 81 (168)
Q Consensus 9 a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~---~ld----~al~r~gr 81 (168)
.....+.+|+|||++.+-.. ....+..+.... ......+.|..+..++ .+. ..+.+ |
T Consensus 119 ~~~~~~~vliiDe~~~l~~~-----------~~~~l~~l~~~~---~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r 182 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPE-----------LLEELRMLSNFQ---TDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--R 182 (269)
T ss_pred HhCCCCeEEEEECcccCCHH-----------HHHHHHHHhCcc---cCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--h
Confidence 34566899999999987311 112222222111 1122222223333333 111 13445 7
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC----------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS----------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~----------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 151 (168)
+...+++++.+.++-.+++...+. .+..++.+.+.|.|.. +.|..+|..+...+..++...|+.+++.+
T Consensus 183 ~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~~~i~~~~v~~ 261 (269)
T TIGR03015 183 IIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEKREIGGEEVRE 261 (269)
T ss_pred eeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 888999999999999999885543 1124566888999985 55999999999999999999999999999
Q ss_pred HHHhhc
Q 030960 152 GYRTNV 157 (168)
Q Consensus 152 al~~~~ 157 (168)
++....
T Consensus 262 ~~~~~~ 267 (269)
T TIGR03015 262 VIAEID 267 (269)
T ss_pred HHHHhh
Confidence 998754
No 76
>PRK08727 hypothetical protein; Validated
Probab=98.22 E-value=9e-06 Score=62.09 Aligned_cols=128 Identities=16% Similarity=0.218 Sum_probs=80.1
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC---CccccCCCCc--ceEEe
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL---DPALLRPGRL--DRKIE 87 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l---d~al~r~grf--~~~i~ 87 (168)
+..+|+|||+|.+.... .. ...+-.+++... ..+.-+++.+...|..+ ++.+++ || ...+.
T Consensus 93 ~~dlLiIDDi~~l~~~~-----~~----~~~lf~l~n~~~---~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~ 158 (233)
T PRK08727 93 GRSLVALDGLESIAGQR-----ED----EVALFDFHNRAR---AAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIG 158 (233)
T ss_pred cCCEEEEeCcccccCCh-----HH----HHHHHHHHHHHH---HcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEE
Confidence 46799999999886433 11 122223444432 22233444455567766 689998 87 56789
Q ss_pred cCCCCHHHHHHHHHh-hcCC-----CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 88 FPLPDRRQKRLVFQM-NLSD-----EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 88 ~~~P~~~~R~~il~~-~l~~-----~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
+++|+.++|.++++. +... +..++.++++++| +.+.+.++++.....+... ++.||...+.+.+...
T Consensus 159 l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~-~~~it~~~~~~~l~~~ 231 (233)
T PRK08727 159 LPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAA-KRRVTVPFLRRVLEEG 231 (233)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHhhc
Confidence 999999999999996 3322 2345667877663 3444444455544434443 3479999999888654
No 77
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.1e-05 Score=65.73 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=81.6
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
..-|++|||+|.+-. ...+.||..++. ...++++|++|+.++.|++++++ |+. .+.|.+++
T Consensus 121 ~~KV~IIDEah~Ls~--------------~A~NALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls 181 (484)
T PRK14956 121 KYKVYIIDEVHMLTD--------------QSFNALLKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVP 181 (484)
T ss_pred CCEEEEEechhhcCH--------------HHHHHHHHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCC
Confidence 457999999998831 456778888873 44578888999999999999999 874 68888888
Q ss_pred HHHHHHHHHhhcC-C-----CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 93 RRQKRLVFQMNLS-D-----EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 93 ~~~R~~il~~~l~-~-----~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
.++-.+.++..+. . +..+..|+..++| +++|.-+++..+... ....|+.+++.+.+
T Consensus 182 ~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~RdAL~lLeq~i~~----~~~~it~~~V~~~l 243 (484)
T PRK14956 182 LSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVRDMLSFMEQAIVF----TDSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHHHHHHHHHHHHHh----CCCCcCHHHHHHHh
Confidence 8777777775543 1 2235567777766 577777777665432 12246666665544
No 78
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=3.2e-05 Score=66.23 Aligned_cols=128 Identities=17% Similarity=0.187 Sum_probs=88.7
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcccc
Q 030960 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 2 l~~iF~~a~~~----~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (168)
++++.+.+... ..-|++|||+|.+.. ...+.|+..++. ...++++|.+|+.++.+++.++
T Consensus 104 ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~--------------~a~naLLKtLEe--pp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 104 IRDIRDKVKYAPSEAKYKVYIIDEVHMLST--------------GAFNALLKTLEE--PPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred HHHHHHHHhhCcccCCeEEEEEECcccCCH--------------HHHHHHHHHhcC--CCCCeEEEEEeCChhhCcHHHH
Confidence 45666665532 256999999998731 346677877774 3446667777788999999999
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 151 (168)
+ |+. .+.|.+|+..+-...++..+.. +..+..++..+.| +.++..+++..+.... ...|+.+++..
T Consensus 168 S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~ 239 (559)
T PRK05563 168 S--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRDALSILDQAISFG----DGKVTYEDALE 239 (559)
T ss_pred h--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHH
Confidence 8 875 5789999999988888765432 2235567777776 8888888887765432 33467666555
Q ss_pred HH
Q 030960 152 GY 153 (168)
Q Consensus 152 al 153 (168)
.+
T Consensus 240 vl 241 (559)
T PRK05563 240 VT 241 (559)
T ss_pred Hh
Confidence 43
No 79
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=9.6e-06 Score=69.87 Aligned_cols=101 Identities=16% Similarity=0.208 Sum_probs=75.7
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
...|++|||+|.+-. ...|.||..|+. ...++.+|.+||+++.|.+.+++ |+ ..+.|..++
T Consensus 124 r~KViIIDEah~Ls~--------------~AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls 184 (700)
T PRK12323 124 RFKVYMIDEVHMLTN--------------HAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMP 184 (700)
T ss_pred CceEEEEEChHhcCH--------------HHHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCC
Confidence 357999999998831 456778888873 45578899999999999999999 87 788999999
Q ss_pred HHHHHHHHHhhcC-CCCC-----HHHHHhCCCCCCHHHHHHHHHHHH
Q 030960 93 RRQKRLVFQMNLS-DEVD-----LEDYVSRPDKISAAEIAAICQEAG 133 (168)
Q Consensus 93 ~~~R~~il~~~l~-~~~~-----~~~la~~t~g~s~~di~~l~~~a~ 133 (168)
.++..+.++..+. ..+. +..|+..++| ++++.-+++..+.
T Consensus 185 ~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G-s~RdALsLLdQai 230 (700)
T PRK12323 185 PGHIVSHLDAILGEEGIAHEVNALRLLAQAAQG-SMRDALSLTDQAI 230 (700)
T ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9988888875543 2222 3456666654 7777777776554
No 80
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.16 E-value=7.7e-05 Score=61.62 Aligned_cols=129 Identities=22% Similarity=0.304 Sum_probs=85.3
Q ss_pred HHHHHHHHHH----cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecC-C-CCCCCcc
Q 030960 2 VRDVFRLAKE----NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATN-R-ADTLDPA 75 (168)
Q Consensus 2 l~~iF~~a~~----~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn-~-~~~ld~a 75 (168)
++.+++.++. ....||+|||+|.+.. ...+.++..++ ...+++|++|+ + ...++++
T Consensus 77 ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------~~q~~LL~~le----~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 77 LREVIEEARQRRSAGRRTILFIDEIHRFNK--------------AQQDALLPHVE----DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHHHHHHHHhhhcCCceEEEEechhhhCH--------------HHHHHHHHHhh----cCcEEEEEeCCCChhhhccHH
Confidence 4556666642 2578999999998741 12234555554 24566666543 3 4589999
Q ss_pred ccCCCCcceEEecCCCCHHHHHHHHHhhcCC------CCC---HHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 030960 76 LLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD------EVD---LEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILP 146 (168)
Q Consensus 76 l~r~grf~~~i~~~~P~~~~R~~il~~~l~~------~~~---~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~ 146 (168)
+++ |+ ..+.+++|+.++...+++..+.. .++ +..+++.+.| .++.+.++++.+... ...|+.
T Consensus 139 L~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~~-----~~~It~ 209 (413)
T PRK13342 139 LLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAALG-----VDSITL 209 (413)
T ss_pred Hhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc-----cCCCCH
Confidence 999 88 78999999999999999865432 122 3456666643 566666666655433 446899
Q ss_pred HHHHHHHHhhc
Q 030960 147 KDFEKGYRTNV 157 (168)
Q Consensus 147 ~d~~~al~~~~ 157 (168)
+++.+++....
T Consensus 210 ~~v~~~~~~~~ 220 (413)
T PRK13342 210 ELLEEALQKRA 220 (413)
T ss_pred HHHHHHHhhhh
Confidence 99988887643
No 81
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.14 E-value=8.5e-06 Score=62.32 Aligned_cols=124 Identities=14% Similarity=0.130 Sum_probs=79.0
Q ss_pred eEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCC-eEEEEecCCCCC---CCccccCCCCcc--eEEec
Q 030960 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVN-VKVIMATNRADT---LDPALLRPGRLD--RKIEF 88 (168)
Q Consensus 15 ~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-v~vi~ttn~~~~---ld~al~r~grf~--~~i~~ 88 (168)
.+|+|||++.+.++. .+ +..+-++++.+ ...++ .+++.+++.|.. +.+.+++ |+. ..+.+
T Consensus 99 dlliiDdi~~~~~~~-----~~----~~~lf~l~n~~---~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l 164 (235)
T PRK08084 99 SLVCIDNIECIAGDE-----LW----EMAIFDLYNRI---LESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKL 164 (235)
T ss_pred CEEEEeChhhhcCCH-----HH----HHHHHHHHHHH---HHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeee
Confidence 589999999874322 11 12232333332 22333 355555555555 5789999 986 88999
Q ss_pred CCCCHHHHHHHHHhhcC-C-----CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 89 PLPDRRQKRLVFQMNLS-D-----EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 89 ~~P~~~~R~~il~~~l~-~-----~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
.+|+.++|.++++.... . +..++.++.+.+| +.+.+..+++.....+.. .+..||...+.+++.
T Consensus 165 ~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~-~~~~it~~~~k~~l~ 234 (235)
T PRK08084 165 QPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASIT-AQRKLTIPFVKEILK 234 (235)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHHc
Confidence 99999999999986332 2 2235567777654 777888888775433333 345688888887763
No 82
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=4.6e-05 Score=65.97 Aligned_cols=117 Identities=19% Similarity=0.211 Sum_probs=82.1
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
..-|++|||+|.+-. ...+.||..|+. ...++.+|.+|+.++.|.+.+++ |+ ..+.|.+++
T Consensus 119 ~~KV~IIDEah~Ls~--------------~a~NALLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls 179 (647)
T PRK07994 119 RFKVYLIDEVHMLSR--------------HSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALD 179 (647)
T ss_pred CCEEEEEechHhCCH--------------HHHHHHHHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCC
Confidence 356999999998731 456788888873 45577788888899999999999 85 889999999
Q ss_pred HHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 93 RRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 93 ~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
.++-...++..+.. +..+..++..+.| ++++.-+++..+... +...|+.+++...+
T Consensus 180 ~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 180 VEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 99999888865531 2234456666555 667777777655322 22335555555443
No 83
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=3.8e-05 Score=67.26 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=80.3
Q ss_pred HHHHHHHHHH----cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcccc
Q 030960 2 VRDVFRLAKE----NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 2 l~~iF~~a~~----~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (168)
++++.+.+.. ...-|++|||+|.+-. ...+.||..|+. ...++.+|.+||+++.|.+.++
T Consensus 104 IReLIe~a~~~P~~gr~KVIIIDEah~LT~--------------~A~NALLKtLEE--PP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 104 MAALLERAVYAPVDARFKVYMIDEVHMLTN--------------HAFNAMLKTLEE--PPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred HHHHHHHHHhccccCCceEEEEeChhhCCH--------------HHHHHHHHHHHh--cCCCeEEEEEECChhhccchhh
Confidence 3455555432 2357999999998831 345677887873 4557889999999999999999
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhcCC-C-----CCHHHHHhCCCCCCHHHHHHHHHHHH
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNLSD-E-----VDLEDYVSRPDKISAAEIAAICQEAG 133 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l~~-~-----~~~~~la~~t~g~s~~di~~l~~~a~ 133 (168)
+ |+ ..+.|..++.++-.+.|+..+.. . ..+..|+..++| +.+|.-+++..+.
T Consensus 168 S--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smRdALsLLdQAi 225 (830)
T PRK07003 168 S--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SMRDALSLTDQAI 225 (830)
T ss_pred h--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9 88 78999999999998888765542 2 234567777766 4566666666554
No 84
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.06 E-value=2.7e-05 Score=57.27 Aligned_cols=82 Identities=15% Similarity=0.272 Sum_probs=60.4
Q ss_pred HHHHHHHHH----cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccC
Q 030960 3 RDVFRLAKE----NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLR 78 (168)
Q Consensus 3 ~~iF~~a~~----~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r 78 (168)
+.+.+.+.. ..+-||+|||+|.+.. ...+.|+..++. ..+...+|.+|+++..+++++++
T Consensus 82 ~~i~~~~~~~~~~~~~kviiide~~~l~~--------------~~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~s 145 (188)
T TIGR00678 82 RELVEFLSRTPQESGRRVVIIEDAERMNE--------------AAANALLKTLEE--PPPNTLFILITPSPEKLLPTIRS 145 (188)
T ss_pred HHHHHHHccCcccCCeEEEEEechhhhCH--------------HHHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHh
Confidence 344555543 3467999999998742 234567777775 33456677777888999999998
Q ss_pred CCCcceEEecCCCCHHHHHHHHHhh
Q 030960 79 PGRLDRKIEFPLPDRRQKRLVFQMN 103 (168)
Q Consensus 79 ~grf~~~i~~~~P~~~~R~~il~~~ 103 (168)
|+ ..+.+++|+.++..++++..
T Consensus 146 --r~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 146 --RC-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred --hc-EEeeCCCCCHHHHHHHHHHc
Confidence 77 48999999999999888765
No 85
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=6.8e-05 Score=64.74 Aligned_cols=116 Identities=12% Similarity=0.123 Sum_probs=83.4
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCH
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~ 93 (168)
.-|++|||+|.+.. ...+.|+..++. ....+.+|.+|+.++.+.+.+++ |+ ..+.|..++.
T Consensus 125 ~KV~IIDEvh~Ls~--------------~a~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~ 185 (618)
T PRK14951 125 FKVFMIDEVHMLTN--------------TAFNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAP 185 (618)
T ss_pred ceEEEEEChhhCCH--------------HHHHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCH
Confidence 35999999998732 336678888873 44567777788889999999988 76 7899999999
Q ss_pred HHHHHHHHhhcCC-C-----CCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 94 RQKRLVFQMNLSD-E-----VDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 94 ~~R~~il~~~l~~-~-----~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
++....++..+.. . ..+..|+..+.| +.+++.+++..+... +...|+.+++.+.+
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARAARG-SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 9988888755431 2 235667887776 888888887665543 23457766666554
No 86
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.02 E-value=0.00013 Score=58.08 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=72.6
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCH
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~ 93 (168)
+.+|+|||+|.+.. ...+.+...++.... ...+|.+|+.+..+.+.+.+ |+ ..+.+.+|+.
T Consensus 126 ~~vlilDe~~~l~~--------------~~~~~L~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~ 186 (337)
T PRK12402 126 YKTILLDNAEALRE--------------DAQQALRRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTD 186 (337)
T ss_pred CcEEEEeCcccCCH--------------HHHHHHHHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCH
Confidence 46999999997731 112234444443222 23455566677788888887 75 5789999999
Q ss_pred HHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 94 RQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 94 ~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
++...+++..+.. +..+..++..+ ++|+..+++.....+. ....||.+++.+++..
T Consensus 187 ~~~~~~l~~~~~~~~~~~~~~al~~l~~~~----~gdlr~l~~~l~~~~~--~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 187 DELVDVLESIAEAEGVDYDDDGLELIAYYA----GGDLRKAILTLQTAAL--AAGEITMEAAYEALGD 248 (337)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHH--cCCCCCHHHHHHHhCC
Confidence 9999999865442 22345566665 3344444443333332 2236888888887654
No 87
>PRK05642 DNA replication initiation factor; Validated
Probab=98.02 E-value=3.6e-05 Score=58.83 Aligned_cols=125 Identities=12% Similarity=0.136 Sum_probs=79.9
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC---CccccCCCCcc--eEEec
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL---DPALLRPGRLD--RKIEF 88 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l---d~al~r~grf~--~~i~~ 88 (168)
..+|+|||++.+.+.. .. +. .+...++.+...++.++|+++..|..+ .+.+++ ||. ..+.+
T Consensus 98 ~d~LiiDDi~~~~~~~-----~~----~~---~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l 163 (234)
T PRK05642 98 YELVCLDDLDVIAGKA-----DW----EE---ALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQM 163 (234)
T ss_pred CCEEEEechhhhcCCh-----HH----HH---HHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeec
Confidence 3588999999875332 11 12 233333333445567777777666544 578888 884 77788
Q ss_pred CCCCHHHHHHHHHh-hcCC-----CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 89 PLPDRRQKRLVFQM-NLSD-----EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 89 ~~P~~~~R~~il~~-~l~~-----~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
.+|+.++|.++++. +... +-.++.++.+.+| +++.+..+++.-...++. .+++||..-+.+++.
T Consensus 164 ~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~-~~~~it~~~~~~~L~ 233 (234)
T PRK05642 164 RGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQ-AQRKLTIPFLKETLG 233 (234)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH-cCCcCCHHHHHHHhc
Confidence 99999999999983 2222 2234456666543 778888887766554444 345688877777664
No 88
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=2.7e-05 Score=65.96 Aligned_cols=118 Identities=19% Similarity=0.185 Sum_probs=83.7
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCH
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~ 93 (168)
.-|++|||+|.+-. ...+.++..|+. ...++.+|.+|+.++.+++.+++ |+ ..++|.+++.
T Consensus 120 ~kV~iIDE~~~ls~--------------~a~naLLk~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~ 180 (509)
T PRK14958 120 FKVYLIDEVHMLSG--------------HSFNALLKTLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPP 180 (509)
T ss_pred cEEEEEEChHhcCH--------------HHHHHHHHHHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCH
Confidence 46999999998841 345678888874 34467777788889999999988 76 6678888888
Q ss_pred HHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 94 RQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 94 ~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
++-...++..+.. +..+..++..+.| +.+++.+++..+... +...|+.+++.+.+..
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~lg~ 243 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARAANG-SVRDALSLLDQSIAY----GNGKVLIADVKTMLGT 243 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHHCC
Confidence 8777666544431 2235567777765 889999998876433 2345888877776643
No 89
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=5e-05 Score=65.66 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=85.0
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
..-|++|||+|.+-. ...+.|+..++. ...++.+|++|+.+..+++.+++ |+ ..+.|.+++
T Consensus 118 k~KV~IIDEVh~LS~--------------~A~NALLKtLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs 178 (702)
T PRK14960 118 RFKVYLIDEVHMLST--------------HSFNALLKTLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLA 178 (702)
T ss_pred CcEEEEEechHhcCH--------------HHHHHHHHHHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCC
Confidence 357999999998731 345667777774 34567778888889999999887 77 688999999
Q ss_pred HHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 93 RRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 93 ~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
..+-.+.++..+.. +..+..++..+.| +.+++.+++..+... +...|+.+++...+.
T Consensus 179 ~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLRdALnLLDQaIay----g~g~IT~edV~~lLG 241 (702)
T PRK14960 179 VDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEMLG 241 (702)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHhc
Confidence 99988888765542 2235567777766 888888887766532 344577777766543
No 90
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=6.2e-05 Score=63.30 Aligned_cols=128 Identities=14% Similarity=0.151 Sum_probs=91.8
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcccc
Q 030960 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 2 l~~iF~~a~~~----~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (168)
++++.+.+... ..-|++|||+|.+-. ...+.|+..++. ..+.+.+|.+|+.++.+++.++
T Consensus 101 IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~--------------~A~NaLLK~LEe--Pp~~v~fIlatte~~Kl~~tI~ 164 (491)
T PRK14964 101 IKVILENSCYLPISSKFKVYIIDEVHMLSN--------------SAFNALLKTLEE--PAPHVKFILATTEVKKIPVTII 164 (491)
T ss_pred HHHHHHHHHhccccCCceEEEEeChHhCCH--------------HHHHHHHHHHhC--CCCCeEEEEEeCChHHHHHHHH
Confidence 45566665433 256999999987731 346778888874 4456777778888999999999
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 151 (168)
+ |+ ..+.|.+++.++....++..... +..+..++..++| +.+++.+++..+...+ ...||.+++.+
T Consensus 165 S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~alslLdqli~y~----~~~It~e~V~~ 236 (491)
T PRK14964 165 S--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRNALFLLEQAAIYS----NNKISEKSVRD 236 (491)
T ss_pred H--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----CCCCCHHHHHH
Confidence 8 77 56899999999988888764432 2235567888865 8889988888776543 23588888776
Q ss_pred HH
Q 030960 152 GY 153 (168)
Q Consensus 152 al 153 (168)
.+
T Consensus 237 ll 238 (491)
T PRK14964 237 LL 238 (491)
T ss_pred HH
Confidence 64
No 91
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.0001 Score=62.16 Aligned_cols=116 Identities=16% Similarity=0.240 Sum_probs=80.2
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCH
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~ 93 (168)
+-|++|||+|.+.. ...+.|+..++. ....+++|.+|+.++.+++++.+ |+. .+.|.+|+.
T Consensus 120 ~KVvIIDEad~Lt~--------------~a~naLLk~LEe--pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~ 180 (486)
T PRK14953 120 YKVYIIDEAHMLTK--------------EAFNALLKTLEE--PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTK 180 (486)
T ss_pred eeEEEEEChhhcCH--------------HHHHHHHHHHhc--CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCH
Confidence 57999999997731 234667777764 33456666667778999999988 765 699999999
Q ss_pred HHHHHHHHhhcCC-C-----CCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 94 RQKRLVFQMNLSD-E-----VDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 94 ~~R~~il~~~l~~-~-----~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
++....++..+.. . ..+..+++.+.| +.+++.++++.+... +...+|.+++.+.+
T Consensus 181 ~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 181 EQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAASLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 9999888864432 1 234556766654 677887877776533 23357777776654
No 92
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00011 Score=59.66 Aligned_cols=128 Identities=14% Similarity=0.208 Sum_probs=81.9
Q ss_pred HHHHHHHHHc----CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccC
Q 030960 3 RDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLR 78 (168)
Q Consensus 3 ~~iF~~a~~~----~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r 78 (168)
+.+++.+... .+.||+|||+|.+.. ...+.++..++. .....++|.+|+.+..+.+++.+
T Consensus 94 ~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------------~~~~~ll~~le~--~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 94 RNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------------AAFNAFLKTLEE--PPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHHHHhhccccCCcEEEEEeChhhcCH--------------HHHHHHHHHHhC--CCCceEEEEEeCCcccCCHHHHh
Confidence 4555555432 257999999997632 234567666664 23345666677788999999988
Q ss_pred CCCcceEEecCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 030960 79 PGRLDRKIEFPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKG 152 (168)
Q Consensus 79 ~grf~~~i~~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~a 152 (168)
|+. .+.+++|+.++...++..... ++..++.+++.+.| +.+.+.+.++.....+ ++. |+.+++...
T Consensus 158 --r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~---~~~-it~~~v~~~ 229 (367)
T PRK14970 158 --RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC---GKN-ITRQAVTEN 229 (367)
T ss_pred --cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc---CCC-CCHHHHHHH
Confidence 664 689999999998888875333 12234567776654 6676666666554332 222 666666655
Q ss_pred HH
Q 030960 153 YR 154 (168)
Q Consensus 153 l~ 154 (168)
+.
T Consensus 230 ~~ 231 (367)
T PRK14970 230 LN 231 (367)
T ss_pred hC
Confidence 43
No 93
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=7.8e-05 Score=63.30 Aligned_cols=115 Identities=19% Similarity=0.204 Sum_probs=81.8
Q ss_pred eEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCHH
Q 030960 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 94 (168)
Q Consensus 15 ~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~~ 94 (168)
-|++|||+|.+-. ...+.|+..++.. .+.+.+|.+|+.+..|++++++ |. ..++|.+++.+
T Consensus 119 KVvIIDEad~Lt~--------------~A~NALLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ 179 (535)
T PRK08451 119 KIFIIDEVHMLTK--------------EAFNALLKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQN 179 (535)
T ss_pred EEEEEECcccCCH--------------HHHHHHHHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHH
Confidence 5899999987731 4456788888753 4456677777889999999999 85 58899999998
Q ss_pred HHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 95 QKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 95 ~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
+-...++..+.. +..+..++..+.| +.+++.+++..+...+ ...||.+++.+.+
T Consensus 180 ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~alnlLdqai~~~----~~~It~~~V~~~l 239 (535)
T PRK08451 180 SIISHLKTILEKEGVSYEPEALEILARSGNG-SLRDTLTLLDQAIIYC----KNAITESKVADML 239 (535)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHHh
Confidence 888877754432 2235567777766 8889988888776544 2236666555443
No 94
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00018 Score=60.93 Aligned_cols=117 Identities=15% Similarity=0.202 Sum_probs=82.3
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
.+.||+|||+|.+. ....+.++..++. ...++++|.+|+.++.+++.+.+ |+. .+.|.+|+
T Consensus 116 ~~kVVIIDEad~ls--------------~~a~naLLk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls 176 (504)
T PRK14963 116 GRKVYILDEAHMMS--------------KSAFNALLKTLEE--PPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLT 176 (504)
T ss_pred CCeEEEEECccccC--------------HHHHHHHHHHHHh--CCCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCC
Confidence 46799999998652 1446677777764 34467777888999999999998 765 79999999
Q ss_pred HHHHHHHHHhhcCC-CC-----CHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 93 RRQKRLVFQMNLSD-EV-----DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 93 ~~~R~~il~~~l~~-~~-----~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
.++-...++..+.. .+ .+..+++.+.| +.+++.++++.+... ...||.+++.+.+.
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~aln~Lekl~~~-----~~~It~~~V~~~l~ 238 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRDAESLLERLLAL-----GTPVTRKQVEEALG 238 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHHC
Confidence 99999888765542 22 34556766654 666676666665331 23588887776654
No 95
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00027 Score=57.58 Aligned_cols=129 Identities=21% Similarity=0.249 Sum_probs=93.0
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC---CCCccccCCCCcc-eEEe
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD---TLDPALLRPGRLD-RKIE 87 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~---~ld~al~r~grf~-~~i~ 87 (168)
..+.||++||+|.|....+ .++-.++..-+.. ..+|.+|+.+|..+ .+|+.+.+ +|. ..|.
T Consensus 122 ~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~ 186 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIV 186 (366)
T ss_pred CCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceee
Confidence 4578999999999985542 3444555555433 56789999999874 88898887 655 4589
Q ss_pred cCCCCHHHHHHHHHhhcC----C----CCCHHHHH---hCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 88 FPLPDRRQKRLVFQMNLS----D----EVDLEDYV---SRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 88 ~~~P~~~~R~~il~~~l~----~----~~~~~~la---~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
|++=+.+|-..|++.... + +..++.+| ....| ..+---.+|+.|+..|-+++...++.++...|....
T Consensus 187 F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 187 FPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 999999999999984443 1 22233333 33444 445555688999999999999999999999995443
No 96
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00014 Score=63.69 Aligned_cols=127 Identities=18% Similarity=0.252 Sum_probs=86.0
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcccc
Q 030960 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 2 l~~iF~~a~~~----~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (168)
++.+.+.+... ...|++|||+|.+-. ...+.|+..|+. ....+++|.+|+.++.|++.++
T Consensus 103 IReLie~~~~~P~~g~~KV~IIDEa~~LT~--------------~A~NALLKtLEE--PP~~tifILaTte~~KLl~TI~ 166 (725)
T PRK07133 103 IRELIENVKNLPTQSKYKIYIIDEVHMLSK--------------SAFNALLKTLEE--PPKHVIFILATTEVHKIPLTIL 166 (725)
T ss_pred HHHHHHHHHhchhcCCCEEEEEEChhhCCH--------------HHHHHHHHHhhc--CCCceEEEEEcCChhhhhHHHH
Confidence 45666666533 356999999998731 346678888874 4456778888889999999999
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhcCC-CC-----CHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNLSD-EV-----DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l~~-~~-----~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 151 (168)
+ |+. .+.|.+|+.++....++..+.. .+ .+..+|..+. -+.+++.+++....... ...|+.+++.+
T Consensus 167 S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~-GslR~AlslLekl~~y~----~~~It~e~V~e 238 (725)
T PRK07133 167 S--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSS-GSLRDALSIAEQVSIFG----NNKITLKNVEE 238 (725)
T ss_pred h--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHHhc----cCCCCHHHHHH
Confidence 8 885 8999999999988888754431 12 2445666665 46677777777654322 22366666554
Q ss_pred H
Q 030960 152 G 152 (168)
Q Consensus 152 a 152 (168)
.
T Consensus 239 l 239 (725)
T PRK07133 239 L 239 (725)
T ss_pred H
Confidence 4
No 97
>PRK04195 replication factor C large subunit; Provisional
Probab=97.91 E-value=0.00011 Score=61.99 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=77.2
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCc-cccCCCCcceEEecCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP-ALLRPGRLDRKIEFPLP 91 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~-al~r~grf~~~i~~~~P 91 (168)
.+.||+|||+|.+..+. .. ..+..++..++. .+..+|+++|.+..+++ .+++ ....+.|++|
T Consensus 98 ~~kvIiIDEaD~L~~~~------d~----~~~~aL~~~l~~----~~~~iIli~n~~~~~~~k~Lrs---r~~~I~f~~~ 160 (482)
T PRK04195 98 RRKLILLDEVDGIHGNE------DR----GGARAILELIKK----AKQPIILTANDPYDPSLRELRN---ACLMIEFKRL 160 (482)
T ss_pred CCeEEEEecCccccccc------ch----hHHHHHHHHHHc----CCCCEEEeccCccccchhhHhc---cceEEEecCC
Confidence 47899999999986421 11 223445555542 23447778899998887 5544 4568999999
Q ss_pred CHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 92 DRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 92 ~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
+..+...+++..+.. +..+..|++.+. +|+..+++.... +..+...++.+++....
T Consensus 161 ~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~----GDlR~ain~Lq~--~a~~~~~it~~~v~~~~ 222 (482)
T PRK04195 161 STRSIVPVLKRICRKEGIECDDEALKEIAERSG----GDLRSAINDLQA--IAEGYGKLTLEDVKTLG 222 (482)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHH--HhcCCCCCcHHHHHHhh
Confidence 999999999865531 223556777654 477777776544 33344567777776554
No 98
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=9.9e-05 Score=64.21 Aligned_cols=130 Identities=16% Similarity=0.166 Sum_probs=90.6
Q ss_pred HHHHHHHHHH----cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcccc
Q 030960 2 VRDVFRLAKE----NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 2 l~~iF~~a~~----~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (168)
|+++.+.+.. ....|++|||+|.+- ....+.|+..|+. ....+.+|++|+.+..+.+.++
T Consensus 104 IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NALLKtLEE--Pp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 104 IREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNAMLKTLEE--PPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred HHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHHHHHHHHh--CCCCcEEEEEeCCccccchHHH
Confidence 4566665532 234699999999762 1345678888874 3446777888889999999998
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhcCC-CC-----CHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNLSD-EV-----DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l~~-~~-----~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 151 (168)
+ |+ ..+.|++++.++-...++..+.. .+ .+..|+..+. -+.+++.+++..+... +...|+.+++..
T Consensus 168 S--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-GslRdAlnLLDqaia~----g~g~It~e~V~~ 239 (709)
T PRK08691 168 S--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-GSMRDALSLLDQAIAL----GSGKVAENDVRQ 239 (709)
T ss_pred H--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CCHHHHHHHHHHHHHh----cCCCcCHHHHHH
Confidence 7 87 56788899999988888766653 22 2566777774 5788888888776553 233577777666
Q ss_pred HHHh
Q 030960 152 GYRT 155 (168)
Q Consensus 152 al~~ 155 (168)
.+..
T Consensus 240 lLG~ 243 (709)
T PRK08691 240 MIGA 243 (709)
T ss_pred HHcc
Confidence 6543
No 99
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00023 Score=61.41 Aligned_cols=129 Identities=16% Similarity=0.197 Sum_probs=90.1
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcccc
Q 030960 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 2 l~~iF~~a~~~----~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (168)
|+++.+.++.. ..-|++|||+|.+-. ...+.|+..|+. ....+.+|.+|+.++.+.+.++
T Consensus 117 IReIie~~~~~P~~a~~KVvIIDEad~Ls~--------------~a~naLLKtLEe--Pp~~~~fIl~tte~~kll~tI~ 180 (598)
T PRK09111 117 IREIIESVRYRPVSARYKVYIIDEVHMLST--------------AAFNALLKTLEE--PPPHVKFIFATTEIRKVPVTVL 180 (598)
T ss_pred HHHHHHHHHhchhcCCcEEEEEEChHhCCH--------------HHHHHHHHHHHh--CCCCeEEEEEeCChhhhhHHHH
Confidence 46666666533 256999999998731 346677777774 3345667777788888999998
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhcCC---CC---CHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNLSD---EV---DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l~~---~~---~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 151 (168)
+ |+ ..+.|..|+.++-...++..+.. .+ .+..++..+.| +.+++.+++..+.... ...|+.+++..
T Consensus 181 S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~al~~Ldkli~~g----~g~It~e~V~~ 252 (598)
T PRK09111 181 S--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRDGLSLLDQAIAHG----AGEVTAEAVRD 252 (598)
T ss_pred h--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhhc----CCCcCHHHHHH
Confidence 8 77 57999999999988888765442 12 34456777765 7888888887765432 33588888777
Q ss_pred HHH
Q 030960 152 GYR 154 (168)
Q Consensus 152 al~ 154 (168)
.+.
T Consensus 253 llg 255 (598)
T PRK09111 253 MLG 255 (598)
T ss_pred HhC
Confidence 654
No 100
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00015 Score=64.61 Aligned_cols=102 Identities=18% Similarity=0.170 Sum_probs=72.9
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCC
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P 91 (168)
...-|++|||+|.|-. ...+.||+.|+. ...++++|++|+.++.|.+.+++ |+ ..+.|..+
T Consensus 119 ~~~KV~IIDEad~lt~--------------~a~NaLLK~LEE--pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l 179 (824)
T PRK07764 119 SRYKIFIIDEAHMVTP--------------QGFNALLKIVEE--PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLV 179 (824)
T ss_pred CCceEEEEechhhcCH--------------HHHHHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCC
Confidence 3457999999999841 446678888874 34467777778888999999998 75 57899999
Q ss_pred CHHHHHHHHHhhcC-CCC-----CHHHHHhCCCCCCHHHHHHHHHHHH
Q 030960 92 DRRQKRLVFQMNLS-DEV-----DLEDYVSRPDKISAAEIAAICQEAG 133 (168)
Q Consensus 92 ~~~~R~~il~~~l~-~~~-----~~~~la~~t~g~s~~di~~l~~~a~ 133 (168)
+.++-.++++..+. ..+ .+..++..+.| +.+++.++++..+
T Consensus 180 ~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 180 PPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDSLSVLDQLL 226 (824)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 98888888876553 122 23456666655 7777777776644
No 101
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00028 Score=60.09 Aligned_cols=129 Identities=15% Similarity=0.145 Sum_probs=88.1
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcccc
Q 030960 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 2 l~~iF~~a~~~----~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (168)
++++.+.+... ...|++|||+|.+.. ...+.|+..++. ....+.+|.+|++++.+.+.++
T Consensus 104 ir~l~~~~~~~p~~~~~kVvIIDEad~ls~--------------~a~naLLK~LEe--pp~~~~fIL~t~d~~kil~tI~ 167 (527)
T PRK14969 104 MRELLDNAQYAPTRGRFKVYIIDEVHMLSK--------------SAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVL 167 (527)
T ss_pred HHHHHHHHhhCcccCCceEEEEcCcccCCH--------------HHHHHHHHHHhC--CCCCEEEEEEeCChhhCchhHH
Confidence 45566655422 245999999997731 345678888874 4456777777888999998888
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhcCC-CC-----CHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNLSD-EV-----DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l~~-~~-----~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 151 (168)
+ |+ ..+.|.+|+.++-...+...+.. .+ .+..++..+. -++++..+++..+... +...|+.+++..
T Consensus 168 S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~-Gslr~al~lldqai~~----~~~~I~~~~v~~ 239 (527)
T PRK14969 168 S--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAA-GSMRDALSLLDQAIAY----GGGTVNESEVRA 239 (527)
T ss_pred H--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHHh----cCCCcCHHHHHH
Confidence 7 76 78999999999988877755431 12 2345666654 4678888888776543 344577777766
Q ss_pred HHH
Q 030960 152 GYR 154 (168)
Q Consensus 152 al~ 154 (168)
.+.
T Consensus 240 ~~~ 242 (527)
T PRK14969 240 MLG 242 (527)
T ss_pred HHC
Confidence 553
No 102
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.84 E-value=0.00034 Score=56.34 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=86.3
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC---------C--CCCCCeEEEEecCCCC-CCCccccCCCC
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG---------F--DQTVNVKVIMATNRAD-TLDPALLRPGR 81 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~--~~~~~v~vi~ttn~~~-~ld~al~r~gr 81 (168)
..++|+||++.+-. .+.+.++..|+. . ....++++|+|+|-.+ .++++++. |
T Consensus 132 ~GvL~lDEi~~L~~--------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--R 195 (337)
T TIGR02030 132 RGILYIDEVNLLED--------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--R 195 (337)
T ss_pred CCEEEecChHhCCH--------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--h
Confidence 47999999998621 233344444421 1 1223577788877544 68999999 9
Q ss_pred cceEEecCCCCH-HHHHHHHHhhcC------------------------------CCCC--------HHHHHhCCCCCCH
Q 030960 82 LDRKIEFPLPDR-RQKRLVFQMNLS------------------------------DEVD--------LEDYVSRPDKISA 122 (168)
Q Consensus 82 f~~~i~~~~P~~-~~R~~il~~~l~------------------------------~~~~--------~~~la~~t~g~s~ 122 (168)
|...+.++.|.. ++|.+|++.... ..+. +.+++..+..-|+
T Consensus 196 f~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~ 275 (337)
T TIGR02030 196 FGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGL 275 (337)
T ss_pred cceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCC
Confidence 999999999976 889999875211 0111 1123333433356
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 123 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 123 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
+--..+++-|...|+.+++..++.+|+..+..-+.
T Consensus 276 Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL 310 (337)
T TIGR02030 276 RGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLAL 310 (337)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 66667778888888889999999999998876443
No 103
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.81 E-value=0.00014 Score=59.09 Aligned_cols=138 Identities=18% Similarity=0.270 Sum_probs=85.7
Q ss_pred HHHHHHHHHHcC----CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEE-ecCCCC-CCCcc
Q 030960 2 VRDVFRLAKENA----PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIM-ATNRAD-TLDPA 75 (168)
Q Consensus 2 l~~iF~~a~~~~----p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~-ttn~~~-~ld~a 75 (168)
|+++|+.|+... ..|||+||++.+-. .....||-.++ +..|++|| ||.+|. .|.+|
T Consensus 89 lr~i~e~a~~~~~~gr~tiLflDEIHRfnK--------------~QQD~lLp~vE----~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 89 LREIIEEARKNRLLGRRTILFLDEIHRFNK--------------AQQDALLPHVE----NGTIILIGATTENPSFELNPA 150 (436)
T ss_pred HHHHHHHHHHHHhcCCceEEEEehhhhcCh--------------hhhhhhhhhhc----CCeEEEEeccCCCCCeeecHH
Confidence 688999996544 59999999998831 11223666664 45677777 555565 89999
Q ss_pred ccCCCCcceEEecCCCCHHHHHHHHHhhcC-C-------CCCHHH-HHhCCCCCCHHHHHHHHHHHHHHHHHhC-CCccC
Q 030960 76 LLRPGRLDRKIEFPLPDRRQKRLVFQMNLS-D-------EVDLED-YVSRPDKISAAEIAAICQEAGMHAVRKN-RYVIL 145 (168)
Q Consensus 76 l~r~grf~~~i~~~~P~~~~R~~il~~~l~-~-------~~~~~~-la~~t~g~s~~di~~l~~~a~~~a~~~~-~~~i~ 145 (168)
+++ |. .++++.+.+.++-.++++..+. . .+.+++ .-...-..+.+|...+++..-+.+.... ...++
T Consensus 151 LlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~ 227 (436)
T COG2256 151 LLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLI 227 (436)
T ss_pred Hhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccC
Confidence 998 64 5688999999999999986222 1 111222 2222223445577776664422222211 12455
Q ss_pred HHHHHHHHHhhcCCC
Q 030960 146 PKDFEKGYRTNVKKP 160 (168)
Q Consensus 146 ~~d~~~al~~~~p~~ 160 (168)
.+++.+.+.+..+..
T Consensus 228 ~~~l~~~l~~~~~~~ 242 (436)
T COG2256 228 LELLEEILQRRSARF 242 (436)
T ss_pred HHHHHHHHhhhhhcc
Confidence 788888887766544
No 104
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.80 E-value=0.00047 Score=55.45 Aligned_cols=123 Identities=17% Similarity=0.200 Sum_probs=83.2
Q ss_pred eEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC-----------CCCCCeEEEEecCCCC-CCCccccCCCCc
Q 030960 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-----------DQTVNVKVIMATNRAD-TLDPALLRPGRL 82 (168)
Q Consensus 15 ~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~v~vi~ttn~~~-~ld~al~r~grf 82 (168)
.+|++||++.+-. .+.+.++..|+.- ....++++++|+|-.+ .++++++. ||
T Consensus 130 GiL~lDEInrl~~--------------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF 193 (334)
T PRK13407 130 GYLYIDEVNLLED--------------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RF 193 (334)
T ss_pred CeEEecChHhCCH--------------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hc
Confidence 5899999998631 3444455555321 1234678888877544 58899999 99
Q ss_pred ceEEecCCCCH-HHHHHHHHhhcCCC------------------------------C-----CHH---HHHhCC--CCCC
Q 030960 83 DRKIEFPLPDR-RQKRLVFQMNLSDE------------------------------V-----DLE---DYVSRP--DKIS 121 (168)
Q Consensus 83 ~~~i~~~~P~~-~~R~~il~~~l~~~------------------------------~-----~~~---~la~~t--~g~s 121 (168)
...+.+++|.. ++|.+|++.....+ + .+. +++..+ +| .
T Consensus 194 ~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s-~ 272 (334)
T PRK13407 194 GLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDG-L 272 (334)
T ss_pred ceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCC-c
Confidence 99999998877 99999997532110 0 011 122222 23 3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 122 AAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 122 ~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
-++|. +++.|...|+..++..|+.+|+..+..-
T Consensus 273 Ra~i~-l~~aA~a~A~l~Gr~~V~~~Di~~~~~~ 305 (334)
T PRK13407 273 RGELT-LLRAARALAAFEGAEAVGRSHLRSVATM 305 (334)
T ss_pred hHHHH-HHHHHHHHHHHcCCCeeCHHHHHHHHHH
Confidence 35565 8888899999999999999999887743
No 105
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.0003 Score=62.74 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=75.4
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCH
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~ 93 (168)
.-|++|||+|.+- ....+.||..|+. ...++.+|++|+.+..|.+.+++ |+ ..+.|++++.
T Consensus 120 ~KViIIDEAh~LT--------------~eAqNALLKtLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~ 180 (944)
T PRK14949 120 FKVYLIDEVHMLS--------------RSSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQ 180 (944)
T ss_pred cEEEEEechHhcC--------------HHHHHHHHHHHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCH
Confidence 4699999999883 1567788888874 44567777788899999999998 77 6799999999
Q ss_pred HHHHHHHHhhcCC-CC-----CHHHHHhCCCCCCHHHHHHHHHHHH
Q 030960 94 RQKRLVFQMNLSD-EV-----DLEDYVSRPDKISAAEIAAICQEAG 133 (168)
Q Consensus 94 ~~R~~il~~~l~~-~~-----~~~~la~~t~g~s~~di~~l~~~a~ 133 (168)
++-.+.++..+.. .+ .+..|+..+.| +++++-+++..+.
T Consensus 181 eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 181 DEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999888865532 22 34556766655 6778888877655
No 106
>PRK04132 replication factor C small subunit; Provisional
Probab=97.79 E-value=0.0004 Score=61.88 Aligned_cols=86 Identities=20% Similarity=0.233 Sum_probs=63.8
Q ss_pred eEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCHH
Q 030960 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 94 (168)
Q Consensus 15 ~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~~ 94 (168)
-|++|||+|.+-. ...+.|+..|+. ...++.+|++||+++.+.+++++ |+ ..+.|++|+.+
T Consensus 632 KVvIIDEaD~Lt~--------------~AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~ 692 (846)
T PRK04132 632 KIIFLDEADALTQ--------------DAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDE 692 (846)
T ss_pred EEEEEECcccCCH--------------HHHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHH
Confidence 5999999998831 334567777773 34578899999999999999998 86 77899999988
Q ss_pred HHHHHHHhhcC------CCCCHHHHHhCCCC
Q 030960 95 QKRLVFQMNLS------DEVDLEDYVSRPDK 119 (168)
Q Consensus 95 ~R~~il~~~l~------~~~~~~~la~~t~g 119 (168)
+-...++.... ++..+..++..++|
T Consensus 693 ~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 693 DIAKRLRYIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 88877764433 12245566666655
No 107
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.79 E-value=0.00019 Score=56.68 Aligned_cols=118 Identities=17% Similarity=0.168 Sum_probs=77.1
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCH
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~ 93 (168)
+.+|+|||+|.+... ....++..++.... ...+|.++|.+..+.+++.+ |+. .+++++|+.
T Consensus 103 ~~vviiDe~~~l~~~--------------~~~~L~~~le~~~~--~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~ 163 (319)
T PRK00440 103 FKIIFLDEADNLTSD--------------AQQALRRTMEMYSQ--NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKK 163 (319)
T ss_pred ceEEEEeCcccCCHH--------------HHHHHHHHHhcCCC--CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCH
Confidence 569999999988421 12334445554332 34566677888888888888 765 589999999
Q ss_pred HHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 94 RQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 94 ~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
++...+++..+.. ...+..++..+.| +.+.+.+.++.++.. ...||.+++..++...
T Consensus 164 ~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~~-----~~~it~~~v~~~~~~~ 226 (319)
T PRK00440 164 EAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAAT-----GKEVTEEAVYKITGTA 226 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc-----CCCCCHHHHHHHhCCC
Confidence 9999888865542 2245667777655 555555555544432 3468888887776443
No 108
>PRK09087 hypothetical protein; Validated
Probab=97.79 E-value=0.0001 Score=56.09 Aligned_cols=123 Identities=17% Similarity=0.131 Sum_probs=79.0
Q ss_pred eEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC---CccccCCCCcc--eEEecC
Q 030960 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL---DPALLRPGRLD--RKIEFP 89 (168)
Q Consensus 15 ~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l---d~al~r~grf~--~~i~~~ 89 (168)
.+|+|||+|.+. ... .- +...++.+....+.+||+++..|..+ .+.+++ ||. ..+++.
T Consensus 89 ~~l~iDDi~~~~--------~~~----~~---lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~ 151 (226)
T PRK09087 89 GPVLIEDIDAGG--------FDE----TG---LFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIG 151 (226)
T ss_pred CeEEEECCCCCC--------CCH----HH---HHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecC
Confidence 578899999762 111 11 22333332344456666666555533 677888 886 888999
Q ss_pred CCCHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 90 LPDRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 90 ~P~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
+|+.+.|.++++..+.. +-.++.|+++.+| +.+.+..+++.-...+... +..+|...+.++++..
T Consensus 152 ~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~-~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 152 EPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALER-KSRITRALAAEVLNEM 222 (226)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHhh
Confidence 99999999999976652 2245567776652 4455555555554444443 4568999999998765
No 109
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00018 Score=61.95 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=85.2
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcccc
Q 030960 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 2 l~~iF~~a~~~----~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (168)
++++.+.++.. ..-|++|||+|.+.. ...+.|+..|+. ...++++|.+|+.++.|++.++
T Consensus 104 ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~--------------~a~naLLk~LEe--pp~~~~fIl~t~~~~kl~~tI~ 167 (576)
T PRK14965 104 IRELRENVKYLPSRSRYKIFIIDEVHMLST--------------NAFNALLKTLEE--PPPHVKFIFATTEPHKVPITIL 167 (576)
T ss_pred HHHHHHHHHhccccCCceEEEEEChhhCCH--------------HHHHHHHHHHHc--CCCCeEEEEEeCChhhhhHHHH
Confidence 35555555432 135999999997731 345678888873 4457788888899999999999
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 151 (168)
+ |+ ..+.|..++.++-...++..+.. ...+..++..+.| +.++..+++..+...+- ..|+.+++..
T Consensus 168 S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~al~~Ldqliay~g----~~It~edV~~ 239 (576)
T PRK14965 168 S--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMRDSLSTLDQVLAFCG----DAVGDDDVAE 239 (576)
T ss_pred H--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcc----CCCCHHHHHH
Confidence 8 76 47889889888877777654431 2235567777765 77777777765543321 2366666554
Q ss_pred H
Q 030960 152 G 152 (168)
Q Consensus 152 a 152 (168)
.
T Consensus 240 l 240 (576)
T PRK14965 240 L 240 (576)
T ss_pred H
Confidence 4
No 110
>PRK06620 hypothetical protein; Validated
Probab=97.77 E-value=7.6e-05 Score=56.34 Aligned_cols=118 Identities=13% Similarity=0.231 Sum_probs=77.9
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC--CCccccCCCCcc--eEEecC
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT--LDPALLRPGRLD--RKIEFP 89 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~--ld~al~r~grf~--~~i~~~ 89 (168)
..+++|||+|.+ .. ..+-.+++.+ ...++.++|+++..|.. + +++++ |+. ..+.+.
T Consensus 86 ~d~lliDdi~~~----------~~----~~lf~l~N~~---~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~ 145 (214)
T PRK06620 86 YNAFIIEDIENW----------QE----PALLHIFNII---NEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLN 145 (214)
T ss_pred CCEEEEeccccc----------hH----HHHHHHHHHH---HhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeC
Confidence 478999999943 00 1222343333 34556778887777765 5 67888 876 468999
Q ss_pred CCCHHHHHHHHHhhcC-C-----CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 90 LPDRRQKRLVFQMNLS-D-----EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 90 ~P~~~~R~~il~~~l~-~-----~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
+|+.+.|..+++.... . +..++.++++.+| +.+.+..+++.....+.. .+..||...+.+++
T Consensus 146 ~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~-~~~~it~~~~~~~l 213 (214)
T PRK06620 146 SPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALI-SKRKITISLVKEVL 213 (214)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH-cCCCCCHHHHHHHh
Confidence 9999999999986554 2 2234556776643 677777777765433333 34578888887765
No 111
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.77 E-value=0.00031 Score=60.67 Aligned_cols=134 Identities=20% Similarity=0.269 Sum_probs=91.1
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccC---CCCcc-eEEec
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLR---PGRLD-RKIEF 88 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r---~grf~-~~i~~ 88 (168)
.|+||+|||+|.|+..+ +.++-.|..|-. .+..+++||+.+|..+ +|..++- .-|++ ..|.|
T Consensus 508 ~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmd-lPEr~l~nrvsSRlg~tRi~F 573 (767)
T KOG1514|consen 508 STTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMD-LPERLLMNRVSSRLGLTRICF 573 (767)
T ss_pred CCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEeccccc-CHHHHhccchhhhccceeeec
Confidence 49999999999998533 356666666654 4566788888777655 4444432 11555 56888
Q ss_pred CCCCHHHHHHHHHhhcCCCC----CHHHH-HhCCCCCCH--HHHHHHHHHHHHHHHHhCC-------CccCHHHHHHHHH
Q 030960 89 PLPDRRQKRLVFQMNLSDEV----DLEDY-VSRPDKISA--AEIAAICQEAGMHAVRKNR-------YVILPKDFEKGYR 154 (168)
Q Consensus 89 ~~P~~~~R~~il~~~l~~~~----~~~~l-a~~t~g~s~--~di~~l~~~a~~~a~~~~~-------~~i~~~d~~~al~ 154 (168)
.+-+..|-++|+...|..-. +.-+| |..-...|| +--..+|++|+..|-.+.. ..++..|+.+|++
T Consensus 574 ~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~ 653 (767)
T KOG1514|consen 574 QPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAIN 653 (767)
T ss_pred CCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHH
Confidence 89999999999998887431 22233 333333333 3344588888888877754 5689999999999
Q ss_pred hhcCCC
Q 030960 155 TNVKKP 160 (168)
Q Consensus 155 ~~~p~~ 160 (168)
.+..+.
T Consensus 654 em~~~~ 659 (767)
T KOG1514|consen 654 EMLASP 659 (767)
T ss_pred HHhhhh
Confidence 876543
No 112
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00039 Score=59.67 Aligned_cols=117 Identities=14% Similarity=0.158 Sum_probs=83.1
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
..-|++|||+|.+-. ...+.|+..++. ....+++|++|+.++.+.+++++ |+. .+.|.+|+
T Consensus 119 ~~KVvIIDEa~~Ls~--------------~a~naLLK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~ 179 (563)
T PRK06647 119 RYRVYIIDEVHMLSN--------------SAFNALLKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLS 179 (563)
T ss_pred CCEEEEEEChhhcCH--------------HHHHHHHHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCC
Confidence 356999999998731 345678888873 44567777788889999999998 876 68999999
Q ss_pred HHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 93 RRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 93 ~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
.++....++.... +...+..++..+.| +.+++.+++..+...+ ...++.+++.+.+
T Consensus 180 ~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 180 LEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 9999888875442 12345567777766 7888888887664332 2346766666544
No 113
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00017 Score=61.88 Aligned_cols=127 Identities=16% Similarity=0.208 Sum_probs=84.8
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcccc
Q 030960 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 2 l~~iF~~a~~~----~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (168)
++.+.+.+... ..-|++|||+|.+-. ...+.|+..|+. ....+++|++|+.+..|.++++
T Consensus 104 IReIi~~~~~~P~~~~~KVIIIDEad~Lt~--------------~A~NaLLKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~ 167 (605)
T PRK05896 104 IRNIIDNINYLPTTFKYKVYIIDEAHMLST--------------SAWNALLKTLEE--PPKHVVFIFATTEFQKIPLTII 167 (605)
T ss_pred HHHHHHHHHhchhhCCcEEEEEechHhCCH--------------HHHHHHHHHHHh--CCCcEEEEEECCChHhhhHHHH
Confidence 45555555433 235999999998731 234667777773 4446778888888999999999
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 151 (168)
+ |+. .+.|++|+..+....++..+.. ...+..++..+.| +++++.++++...... +. .|+.+++.+
T Consensus 168 S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~AlnlLekL~~y~---~~-~It~e~V~e 239 (605)
T PRK05896 168 S--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRDGLSILDQLSTFK---NS-EIDIEDINK 239 (605)
T ss_pred h--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHhhc---CC-CCCHHHHHH
Confidence 8 875 7899999999988888764431 1234566667665 6777777777643322 21 266665555
Q ss_pred H
Q 030960 152 G 152 (168)
Q Consensus 152 a 152 (168)
.
T Consensus 240 l 240 (605)
T PRK05896 240 T 240 (605)
T ss_pred H
Confidence 3
No 114
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.74 E-value=0.00023 Score=53.86 Aligned_cols=124 Identities=13% Similarity=0.125 Sum_probs=76.4
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC---CCCccccCCCCc--ceEEe
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD---TLDPALLRPGRL--DRKIE 87 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~---~ld~al~r~grf--~~~i~ 87 (168)
.+.+|+|||+|.+-.. ....+..+++.+ ......+++.+++.+. .+.+.+.+ || ...+.
T Consensus 90 ~~~~liiDdi~~l~~~-----------~~~~L~~~~~~~---~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~ 153 (227)
T PRK08903 90 EAELYAVDDVERLDDA-----------QQIALFNLFNRV---RAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYE 153 (227)
T ss_pred cCCEEEEeChhhcCch-----------HHHHHHHHHHHH---HHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEE
Confidence 3678999999976211 112223333332 3333433444444322 34466666 77 57999
Q ss_pred cCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 88 FPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 88 ~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
+++|+..++..+++.... ++.-++.++... +=+.+++.++++.-...+.. .+..||...+.+++.
T Consensus 154 l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~-~gn~~~l~~~l~~l~~~~~~-~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 154 LKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHF-RRDMPSLMALLDALDRYSLE-QKRPVTLPLLREMLA 224 (227)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHh
Confidence 999999999999886433 122345567643 34788888888875444434 346899998888875
No 115
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.74 E-value=3.4e-05 Score=58.45 Aligned_cols=107 Identities=20% Similarity=0.327 Sum_probs=64.9
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC---CccccCCCCcce--EEe
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL---DPALLRPGRLDR--KIE 87 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l---d~al~r~grf~~--~i~ 87 (168)
...+|+|||++.+.++. ..+..+-.+++.+ ...++.+|+++...|..+ ++.+.+ ||.. .+.
T Consensus 97 ~~DlL~iDDi~~l~~~~---------~~q~~lf~l~n~~---~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~ 162 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQ---------RTQEELFHLFNRL---IESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVE 162 (219)
T ss_dssp TSSEEEEETGGGGTTHH---------HHHHHHHHHHHHH---HHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEE
T ss_pred cCCEEEEecchhhcCch---------HHHHHHHHHHHHH---HhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhh
Confidence 47899999999986332 1123333333333 344556677766666654 567777 8765 888
Q ss_pred cCCCCHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHH
Q 030960 88 FPLPDRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGM 134 (168)
Q Consensus 88 ~~~P~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~ 134 (168)
+.+|+.+.|.++++..... +..+..++++.++ +.++|..+++.-..
T Consensus 163 l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 163 LQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDA 214 (219)
T ss_dssp E----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 9999999999999865541 2234456666543 77888887776543
No 116
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.70 E-value=0.00021 Score=56.40 Aligned_cols=135 Identities=19% Similarity=0.291 Sum_probs=82.1
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC--CCCccccCCCC
Q 030960 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD--TLDPALLRPGR 81 (168)
Q Consensus 4 ~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~--~ld~al~r~gr 81 (168)
.+....+..++-+|+|||++.++..+ ... ++.+..++..+.+ .-.-+++.+||-.-.. .-|+-+-+ |
T Consensus 136 ~~~~llr~~~vrmLIIDE~H~lLaGs-------~~~-qr~~Ln~LK~L~N-eL~ipiV~vGt~~A~~al~~D~QLa~--R 204 (302)
T PF05621_consen 136 QVLRLLRRLGVRMLIIDEFHNLLAGS-------YRK-QREFLNALKFLGN-ELQIPIVGVGTREAYRALRTDPQLAS--R 204 (302)
T ss_pred HHHHHHHHcCCcEEEeechHHHhccc-------HHH-HHHHHHHHHHHhh-ccCCCeEEeccHHHHHHhccCHHHHh--c
Confidence 35566788899999999999987432 111 2333334444432 1122566666544333 33555656 8
Q ss_pred cceEEecCCCC-HHHHHHHHH---hhc--CC--CCCH----HHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 030960 82 LDRKIEFPLPD-RRQKRLVFQ---MNL--SD--EVDL----EDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 149 (168)
Q Consensus 82 f~~~i~~~~P~-~~~R~~il~---~~l--~~--~~~~----~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~ 149 (168)
|+.. .+|... .++...++. ..+ .. ...- ..+-..|+|.+| +|.++++.|+..|++.+...||.+.+
T Consensus 205 F~~~-~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~E~It~~~l 282 (302)
T PF05621_consen 205 FEPF-ELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSGEERITREIL 282 (302)
T ss_pred cCCc-cCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcCCceecHHHH
Confidence 8643 445443 233344443 222 22 2222 345566777665 89999999999999999999999988
Q ss_pred HH
Q 030960 150 EK 151 (168)
Q Consensus 150 ~~ 151 (168)
..
T Consensus 283 ~~ 284 (302)
T PF05621_consen 283 DK 284 (302)
T ss_pred hh
Confidence 76
No 117
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.68 E-value=0.00074 Score=54.61 Aligned_cols=128 Identities=19% Similarity=0.224 Sum_probs=83.5
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC---------C--CCCCCeEEEEecCCCC-CCCccccCCCC
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG---------F--DQTVNVKVIMATNRAD-TLDPALLRPGR 81 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~--~~~~~v~vi~ttn~~~-~ld~al~r~gr 81 (168)
..+||+||++.+-+ .+.+.++..|+. . ....++++|+|.|-.+ .+++++.. |
T Consensus 145 ~GiL~lDEInrL~~--------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--R 208 (350)
T CHL00081 145 RGILYVDEVNLLDD--------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--R 208 (350)
T ss_pred CCEEEecChHhCCH--------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--H
Confidence 47999999998742 223334444422 1 1233577777666444 59999999 9
Q ss_pred cceEEecCCCC-HHHHHHHHHhhcCCC------------------------------CC--------HHHHHhCCCCCCH
Q 030960 82 LDRKIEFPLPD-RRQKRLVFQMNLSDE------------------------------VD--------LEDYVSRPDKISA 122 (168)
Q Consensus 82 f~~~i~~~~P~-~~~R~~il~~~l~~~------------------------------~~--------~~~la~~t~g~s~ 122 (168)
|...+.++.|+ .+.|.+|++...... +. +.+++..+.--|+
T Consensus 209 f~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~ 288 (350)
T CHL00081 209 FGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGL 288 (350)
T ss_pred hCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCC
Confidence 99999999997 699999998533210 00 1112223322355
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 123 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 123 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
+---.+++-|...|+-+++..++.+|+..+..-+.
T Consensus 289 Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL 323 (350)
T CHL00081 289 RGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCL 323 (350)
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 55556667677777778889999999999886543
No 118
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.00015 Score=62.49 Aligned_cols=117 Identities=11% Similarity=0.122 Sum_probs=78.5
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
...||+|||+|.+-. ...+.|+..++. ...++++|++|+.++.+.+.+++ |+. .+.|++++
T Consensus 119 ~~kVIIIDEad~Lt~--------------~a~naLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs 179 (624)
T PRK14959 119 RYKVFIIDEAHMLTR--------------EAFNALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLS 179 (624)
T ss_pred CceEEEEEChHhCCH--------------HHHHHHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCC
Confidence 357999999998831 345677877774 34578888889999999999988 874 67999999
Q ss_pred HHHHHHHHHhhcCC-C--C---CHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 93 RRQKRLVFQMNLSD-E--V---DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 93 ~~~R~~il~~~l~~-~--~---~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
.++-..+++..+.. . + .+..+++.+.| +.++..+++..++ ..+...|+.+++..++
T Consensus 180 ~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 180 EAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 99999888764432 2 2 24456665543 4455555555432 2234467777655544
No 119
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.67 E-value=0.00036 Score=57.33 Aligned_cols=132 Identities=16% Similarity=0.221 Sum_probs=86.9
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC---ccccCCCCcce--EEe
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD---PALLRPGRLDR--KIE 87 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld---~al~r~grf~~--~i~ 87 (168)
+-.+++|||++.+.++. +.-..|...+..+...++-+|+.+-..|..++ +.|++ ||.+ .+.
T Consensus 175 ~~dlllIDDiq~l~gk~------------~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~ 240 (408)
T COG0593 175 SLDLLLIDDIQFLAGKE------------RTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVE 240 (408)
T ss_pred ccCeeeechHhHhcCCh------------hHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEe
Confidence 45799999999997654 11222333333334444556666666677665 78888 9874 567
Q ss_pred cCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcCCC
Q 030960 88 FPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 88 ~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~~ 160 (168)
+.+|+.+.|..|++.... ++-....+|.+.. =+.++|+.+++.....+...+. .||.....++++......
T Consensus 241 I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~~ 317 (408)
T COG0593 241 IEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRAG 317 (408)
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhccc
Confidence 799999999999986443 2223445665543 3678888888777666655543 678888888777665543
No 120
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.66 E-value=0.0014 Score=55.70 Aligned_cols=128 Identities=20% Similarity=0.226 Sum_probs=87.5
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC---------C--CCCCCeEEEEecCCCC------------
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG---------F--DQTVNVKVIMATNRAD------------ 70 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~--~~~~~v~vi~ttn~~~------------ 70 (168)
..+++|||+|.+-. .....++..|+. . .-..+..||||+|-..
T Consensus 301 ~Gil~iDEi~~l~~--------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n 366 (509)
T smart00350 301 NGVCCIDEFDKMDD--------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEEN 366 (509)
T ss_pred CCEEEEechhhCCH--------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhc
Confidence 46899999998731 222334444432 1 1124678999999542
Q ss_pred -CCCccccCCCCcceEEec-CCCCHHHHHHHHHhhcC----------C----CCC------------------H-----H
Q 030960 71 -TLDPALLRPGRLDRKIEF-PLPDRRQKRLVFQMNLS----------D----EVD------------------L-----E 111 (168)
Q Consensus 71 -~ld~al~r~grf~~~i~~-~~P~~~~R~~il~~~l~----------~----~~~------------------~-----~ 111 (168)
.+++++++ |||..+.+ +.|+.+.+.+|.++.+. . ..+ + +
T Consensus 367 ~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~ 444 (509)
T smart00350 367 IDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAE 444 (509)
T ss_pred cCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 69999999 99987655 89999999888875211 0 000 0 0
Q ss_pred HH-----HhC----------CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 112 DY-----VSR----------PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 112 ~l-----a~~----------t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
.+ .-+ .-|.|++.+..+++-|...|.-+.+..++.+|+..|++-+.
T Consensus 445 ~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~ 505 (509)
T smart00350 445 KLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLR 505 (509)
T ss_pred HHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 01 001 12579999999999999999999999999999999987553
No 121
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.66 E-value=0.00063 Score=57.42 Aligned_cols=119 Identities=17% Similarity=0.208 Sum_probs=80.7
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCH
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~ 93 (168)
|+|+++.|++.++.. ....+.+..+...+. ..++.+|+.+. ...+|+.|. ++-..+.+++|+.
T Consensus 82 ~~~~vl~d~h~~~~~---------~~~~r~l~~l~~~~~---~~~~~~i~~~~--~~~~p~el~---~~~~~~~~~lP~~ 144 (489)
T CHL00195 82 PALFLLKDFNRFLND---------ISISRKLRNLSRILK---TQPKTIIIIAS--ELNIPKELK---DLITVLEFPLPTE 144 (489)
T ss_pred CcEEEEecchhhhcc---------hHHHHHHHHHHHHHH---hCCCEEEEEcC--CCCCCHHHH---hceeEEeecCcCH
Confidence 799999999999822 123344555544443 34445555544 356777776 4557889999999
Q ss_pred HHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 94 RQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 94 ~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
+++.++++.... ++.+++.++..+.|+|..++.+++..+.. . ...++.+++...++
T Consensus 145 ~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~----~-~~~~~~~~~~~i~~ 206 (489)
T CHL00195 145 SEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIA----T-YKTIDENSIPLILE 206 (489)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH----H-cCCCChhhHHHHHH
Confidence 999999976543 24467889999999999999999887532 1 22355555444443
No 122
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.00058 Score=58.31 Aligned_cols=117 Identities=17% Similarity=0.183 Sum_probs=81.0
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCH
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~ 93 (168)
.-|++|||+|.+-. ...+.|+..|+. ....+.+|++|+.+..+.+.+++ |+ ..++|.+++.
T Consensus 120 ~kViIIDEa~~ls~--------------~a~naLLK~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~ 180 (546)
T PRK14957 120 YKVYLIDEVHMLSK--------------QSFNALLKTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQ 180 (546)
T ss_pred cEEEEEechhhccH--------------HHHHHHHHHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCH
Confidence 56999999998731 355678888874 34466677777779999989888 77 7899999999
Q ss_pred HHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 94 RQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 94 ~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
++-...++..+.. +..+..++..+ |-+.+++.+++..+...+ ...|+.+++.+++.
T Consensus 181 ~eI~~~L~~il~~egi~~e~~Al~~Ia~~s-~GdlR~alnlLek~i~~~----~~~It~~~V~~~l~ 242 (546)
T PRK14957 181 ADIKDQLKIILAKENINSDEQSLEYIAYHA-KGSLRDALSLLDQAISFC----GGELKQAQIKQMLG 242 (546)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc----cCCCCHHHHHHHHc
Confidence 9888777754331 22344566666 457777777777665432 13477777776543
No 123
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.00035 Score=56.37 Aligned_cols=71 Identities=15% Similarity=0.320 Sum_probs=58.9
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCH
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~ 93 (168)
.-|++||++|.+- ....|.||..++ +..+++++|.+|++++.|.|.+++ |+ ..+.|++|+.
T Consensus 133 ~kV~iI~~ae~m~--------------~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~ 193 (342)
T PRK06964 133 ARVVVLYPAEALN--------------VAAANALLKTLE--EPPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAP 193 (342)
T ss_pred ceEEEEechhhcC--------------HHHHHHHHHHhc--CCCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCH
Confidence 4578888888763 155678899998 566789999999999999999999 88 6899999999
Q ss_pred HHHHHHHHhh
Q 030960 94 RQKRLVFQMN 103 (168)
Q Consensus 94 ~~R~~il~~~ 103 (168)
++..+.+...
T Consensus 194 ~~~~~~L~~~ 203 (342)
T PRK06964 194 EAAAAWLAAQ 203 (342)
T ss_pred HHHHHHHHHc
Confidence 9999888753
No 124
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.62 E-value=0.00063 Score=60.17 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=80.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC---------CCCCeEEEEecCCCC-----
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD---------QTVNVKVIMATNRAD----- 70 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vi~ttn~~~----- 70 (168)
+.+..+....+||+|||+|.+-+ .+.+.|+..++.-. ...++++|+|||...
T Consensus 545 l~~~~~~~p~~VvllDEieka~~--------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~ 610 (731)
T TIGR02639 545 LTEAVRKHPHCVLLLDEIEKAHP--------------DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSK 610 (731)
T ss_pred HHHHHHhCCCeEEEEechhhcCH--------------HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhh
Confidence 44555667789999999997631 45566666666421 124578999998742
Q ss_pred --------------------CCCccccCCCCcceEEecCCCCHHHHHHHHHhhcCC---------------CCCHHHHHh
Q 030960 71 --------------------TLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD---------------EVDLEDYVS 115 (168)
Q Consensus 71 --------------------~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~~---------------~~~~~~la~ 115 (168)
.+.|.++. |||.++.|.+.+.++..+|++..+.. +-.++.+++
T Consensus 611 ~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~ 688 (731)
T TIGR02639 611 PPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAE 688 (731)
T ss_pred ccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHH
Confidence 24566665 99999999999999999999866541 112344555
Q ss_pred C--CCCCCHHHHHHHHHHHHHHHHH
Q 030960 116 R--PDKISAAEIAAICQEAGMHAVR 138 (168)
Q Consensus 116 ~--t~g~s~~di~~l~~~a~~~a~~ 138 (168)
. ...|..+.|.++++.....++.
T Consensus 689 ~~~~~~~GaR~l~r~i~~~~~~~l~ 713 (731)
T TIGR02639 689 KGYDEEFGARPLARVIQEEIKKPLS 713 (731)
T ss_pred hCCCcccCchHHHHHHHHHhHHHHH
Confidence 3 4567778888888776655543
No 125
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.00023 Score=57.11 Aligned_cols=74 Identities=16% Similarity=0.342 Sum_probs=60.6
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCC
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P 91 (168)
...-|++||++|.+-. ...+.||..++. ...++++|.+|++++.|.|.+++ |+.. +.|++|
T Consensus 105 ~~~kv~iI~~a~~m~~--------------~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~~-~~~~~~ 165 (328)
T PRK05707 105 GGRKVVLIEPAEAMNR--------------NAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQQ-QACPLP 165 (328)
T ss_pred CCCeEEEECChhhCCH--------------HHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hcee-eeCCCc
Confidence 3467889999998741 556788888884 44678899999999999999999 8866 899999
Q ss_pred CHHHHHHHHHhhc
Q 030960 92 DRRQKRLVFQMNL 104 (168)
Q Consensus 92 ~~~~R~~il~~~l 104 (168)
+.++-.+.+....
T Consensus 166 ~~~~~~~~L~~~~ 178 (328)
T PRK05707 166 SNEESLQWLQQAL 178 (328)
T ss_pred CHHHHHHHHHHhc
Confidence 9999988887654
No 126
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=0.00086 Score=56.12 Aligned_cols=118 Identities=16% Similarity=0.161 Sum_probs=79.1
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCC
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P 91 (168)
....||+|||+|.+.. ...+.|+..++. ....+++|++|+.++.|.+++++ |+. .++|.++
T Consensus 120 ~~~kvvIIdead~lt~--------------~~~n~LLk~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l 180 (451)
T PRK06305 120 SRYKIYIIDEVHMLTK--------------EAFNSLLKTLEE--PPQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRI 180 (451)
T ss_pred CCCEEEEEecHHhhCH--------------HHHHHHHHHhhc--CCCCceEEEEeCChHhcchHHHH--hce-EEeCCCC
Confidence 3478999999998731 235677888875 34467777788889999999998 774 6899999
Q ss_pred CHHHHHHHHHhhcCC---CC---CHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 92 DRRQKRLVFQMNLSD---EV---DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 92 ~~~~R~~il~~~l~~---~~---~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
+.++-...++..+.. .+ .+..++..+.| +.+++.+.++..... .+ ..|+.+++.+.+
T Consensus 181 ~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 181 PEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 999988877754431 12 34567776654 666666666654322 11 236666554443
No 127
>PLN03025 replication factor C subunit; Provisional
Probab=97.59 E-value=0.00041 Score=55.35 Aligned_cols=114 Identities=13% Similarity=0.132 Sum_probs=70.9
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
.+.||+|||+|.+... ..+.++..++... ....+|.+||.++.+.+++++ |+ ..+.|++|+
T Consensus 99 ~~kviiiDE~d~lt~~--------------aq~aL~~~lE~~~--~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~ 159 (319)
T PLN03025 99 RHKIVILDEADSMTSG--------------AQQALRRTMEIYS--NTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLS 159 (319)
T ss_pred CeEEEEEechhhcCHH--------------HHHHHHHHHhccc--CCceEEEEeCCccccchhHHH--hh-hcccCCCCC
Confidence 3679999999988421 1233444454322 234466788888999999998 76 579999999
Q ss_pred HHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 030960 93 RRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151 (168)
Q Consensus 93 ~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 151 (168)
.++....++..... +..+..++..+.| ..+.+.+.++.+. .+...++.+++.+
T Consensus 160 ~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq~~~-----~~~~~i~~~~v~~ 218 (319)
T PLN03025 160 DQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQATH-----SGFGFVNQENVFK 218 (319)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH-----hcCCCCCHHHHHH
Confidence 99998888754431 2235566666543 4445544444221 1223466666544
No 128
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.58 E-value=0.00063 Score=56.24 Aligned_cols=138 Identities=20% Similarity=0.212 Sum_probs=85.3
Q ss_pred HcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC-----------CCCCeEEEEecCCCC---------
Q 030960 11 ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-----------QTVNVKVIMATNRAD--------- 70 (168)
Q Consensus 11 ~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vi~ttn~~~--------- 70 (168)
...++||||||+|.+...+.+.+...+-....+.+.||..|++-. .....++|.|+|-..
T Consensus 171 ~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~ 250 (412)
T PRK05342 171 KAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGL 250 (412)
T ss_pred HcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCc
Confidence 346899999999999876433222221112246667777776420 112355666666511
Q ss_pred -------------------------------------------CCCccccCCCCcceEEecCCCCHHHHHHHHHh----h
Q 030960 71 -------------------------------------------TLDPALLRPGRLDRKIEFPLPDRRQKRLVFQM----N 103 (168)
Q Consensus 71 -------------------------------------------~ld~al~r~grf~~~i~~~~P~~~~R~~il~~----~ 103 (168)
-+.|+++ ||+|..+.|.+.+.++..+|+.. .
T Consensus 251 ~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f~~L~~~~L~~Il~~~~~~l 328 (412)
T PRK05342 251 EKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATLEELDEEALVRILTEPKNAL 328 (412)
T ss_pred HHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeecCCCCHHHHHHHHHHHHHHH
Confidence 0234454 49999999999999999999962 1
Q ss_pred cC---------------CCCCHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHhCC-------CccCHHHHH
Q 030960 104 LS---------------DEVDLEDYVSR--PDKISAAEIAAICQEAGMHAVRKNR-------YVILPKDFE 150 (168)
Q Consensus 104 l~---------------~~~~~~~la~~--t~g~s~~di~~l~~~a~~~a~~~~~-------~~i~~~d~~ 150 (168)
+. ++--+..|++. ..++-.+-|..++++...-.+.+-. ..|+.+.+.
T Consensus 329 ~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~~~~~~~v~I~~~~v~ 399 (412)
T PRK05342 329 VKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPSREDVEKVVITKEVVE 399 (412)
T ss_pred HHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhccccCCCceEEECHHHhc
Confidence 11 12235567764 5677888888888887666655421 236666654
No 129
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.57 E-value=0.00044 Score=57.09 Aligned_cols=127 Identities=18% Similarity=0.210 Sum_probs=81.8
Q ss_pred HcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC-----------CCCCeEEEEecCCC----------
Q 030960 11 ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-----------QTVNVKVIMATNRA---------- 69 (168)
Q Consensus 11 ~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vi~ttn~~---------- 69 (168)
..+|+||||||+|.+...+.+.+...+-....+.+.||..|++.. ...+.++|.|+|-.
T Consensus 179 ~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~ 258 (413)
T TIGR00382 179 KAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGL 258 (413)
T ss_pred hcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccCh
Confidence 346889999999999876533222211111245566666665431 12346778887761
Q ss_pred -----------------C-----------------------CCCccccCCCCcceEEecCCCCHHHHHHHHHhhcC----
Q 030960 70 -----------------D-----------------------TLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS---- 105 (168)
Q Consensus 70 -----------------~-----------------------~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~---- 105 (168)
+ .+.|+++- |+|..+.|.+.+.++..+|+...+.
T Consensus 259 ~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f~pL~~~~L~~Il~~~~n~l~k 336 (413)
T TIGR00382 259 EKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATLEKLDEEALIAILTKPKNALVK 336 (413)
T ss_pred HHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeecCCCCHHHHHHHHHHHHHHHHH
Confidence 0 03355554 9999999999999999999874211
Q ss_pred ---------------CCCCHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHh
Q 030960 106 ---------------DEVDLEDYVSR--PDKISAAEIAAICQEAGMHAVRK 139 (168)
Q Consensus 106 ---------------~~~~~~~la~~--t~g~s~~di~~l~~~a~~~a~~~ 139 (168)
++--++.|++. ..++-.+-|..+++........+
T Consensus 337 q~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 337 QYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred HHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 12235567765 46788888988888877666654
No 130
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.56 E-value=0.0011 Score=58.46 Aligned_cols=122 Identities=18% Similarity=0.154 Sum_probs=77.9
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecC-CC-CCCCccccCCCCcceEEecCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATN-RA-DTLDPALLRPGRLDRKIEFPL 90 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn-~~-~~ld~al~r~grf~~~i~~~~ 90 (168)
...+|+|||+|.+.. .....++..++ ...+++|++|+ ++ ..+++++++ |. ..+.+++
T Consensus 109 ~~~IL~IDEIh~Ln~--------------~qQdaLL~~lE----~g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~p 167 (725)
T PRK13341 109 KRTILFIDEVHRFNK--------------AQQDALLPWVE----NGTITLIGATTENPYFEVNKALVS--RS-RLFRLKS 167 (725)
T ss_pred CceEEEEeChhhCCH--------------HHHHHHHHHhc----CceEEEEEecCCChHhhhhhHhhc--cc-cceecCC
Confidence 467999999998731 11233444443 24566666553 33 468999998 64 4689999
Q ss_pred CCHHHHHHHHHhhcC--------CCC-----CHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCC--CccCHHHHHHHHHh
Q 030960 91 PDRRQKRLVFQMNLS--------DEV-----DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNR--YVILPKDFEKGYRT 155 (168)
Q Consensus 91 P~~~~R~~il~~~l~--------~~~-----~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~--~~i~~~d~~~al~~ 155 (168)
++.+++..+++..+. ..+ .++.|+..+.| ..+.+.++++.++..+..... ..|+.+++.+++.+
T Consensus 168 Ls~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 168 LSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred CCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHH
Confidence 999999999986654 112 24567776643 567777777766543322211 23777888887765
Q ss_pred h
Q 030960 156 N 156 (168)
Q Consensus 156 ~ 156 (168)
.
T Consensus 247 ~ 247 (725)
T PRK13341 247 R 247 (725)
T ss_pred h
Confidence 3
No 131
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.56 E-value=0.00053 Score=60.69 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=77.3
Q ss_pred HHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC--C-------CCCCeEEEEecCCC--------
Q 030960 7 RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--D-------QTVNVKVIMATNRA-------- 69 (168)
Q Consensus 7 ~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~-------~~~~v~vi~ttn~~-------- 69 (168)
+..+....+||||||+|.+-+ .+.+.|+..|+.- . ...++++|+|||.-
T Consensus 551 ~~v~~~p~sVlllDEieka~~--------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~ 616 (758)
T PRK11034 551 DAVIKHPHAVLLLDEIEKAHP--------------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKS 616 (758)
T ss_pred HHHHhCCCcEEEeccHhhhhH--------------HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcc
Confidence 344556679999999998731 4556666666521 1 12468899999932
Q ss_pred -----------------CCCCccccCCCCcceEEecCCCCHHHHHHHHHhhcCC---------------CCCHHHHHhC-
Q 030960 70 -----------------DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD---------------EVDLEDYVSR- 116 (168)
Q Consensus 70 -----------------~~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~~---------------~~~~~~la~~- 116 (168)
..+.|.++. |+|..+.|++.+.++..+|+...+.. +--++.|++.
T Consensus 617 ~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~ 694 (758)
T PRK11034 617 IGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKG 694 (758)
T ss_pred cCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhC
Confidence 125566766 99999999999999999999865541 1123445543
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHH
Q 030960 117 -PDKISAAEIAAICQEAGMHAVR 138 (168)
Q Consensus 117 -t~g~s~~di~~l~~~a~~~a~~ 138 (168)
..+|-.+.|.+++++-....+.
T Consensus 695 ~~~~~GAR~l~r~i~~~l~~~la 717 (758)
T PRK11034 695 YDRAMGARPMARVIQDNLKKPLA 717 (758)
T ss_pred CCCCCCCchHHHHHHHHHHHHHH
Confidence 2456667787777776554443
No 132
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0017 Score=56.15 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=80.1
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCH
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~ 93 (168)
.-||+|||+|.+.. ...+.|+..++. ....+++|.+|+.++.+.+.+++ |+. .+.|..++.
T Consensus 121 ~kVvIIDEa~~L~~--------------~a~naLLk~LEe--pp~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~ 181 (585)
T PRK14950 121 YKVYIIDEVHMLST--------------AAFNALLKTLEE--PPPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSV 181 (585)
T ss_pred eEEEEEeChHhCCH--------------HHHHHHHHHHhc--CCCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCH
Confidence 56999999997731 345667777774 23456677777888889888887 764 688999999
Q ss_pred HHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 94 RQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 94 ~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
.+...+++..... ...+..++..+.| +.+++.+.++..... ....|+.+++...+
T Consensus 182 ~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 182 ADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 9888888755432 1235567777766 888888887764332 23457777766544
No 133
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.44 E-value=0.00033 Score=55.53 Aligned_cols=72 Identities=25% Similarity=0.400 Sum_probs=52.0
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
.+.+|+|||+|.+... .....+. ..++. ...++.+|++||.++.+++++++ ||. .+.++.|+
T Consensus 100 ~~~vliiDe~d~l~~~----------~~~~~L~---~~le~--~~~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~ 161 (316)
T PHA02544 100 GGKVIIIDEFDRLGLA----------DAQRHLR---SFMEA--YSKNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPT 161 (316)
T ss_pred CCeEEEEECcccccCH----------HHHHHHH---HHHHh--cCCCceEEEEcCChhhchHHHHh--hce-EEEeCCCC
Confidence 5789999999977211 1112233 33443 23456788899999999999999 885 78999999
Q ss_pred HHHHHHHHHh
Q 030960 93 RRQKRLVFQM 102 (168)
Q Consensus 93 ~~~R~~il~~ 102 (168)
.+++..+++.
T Consensus 162 ~~~~~~il~~ 171 (316)
T PHA02544 162 KEEQIEMMKQ 171 (316)
T ss_pred HHHHHHHHHH
Confidence 9999877663
No 134
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.40 E-value=0.0012 Score=57.11 Aligned_cols=127 Identities=16% Similarity=0.239 Sum_probs=83.0
Q ss_pred eEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC---------CC--CCCCeEEEEecCCCC---CCCccccCCC
Q 030960 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG---------FD--QTVNVKVIMATNRAD---TLDPALLRPG 80 (168)
Q Consensus 15 ~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~~--~~~~v~vi~ttn~~~---~ld~al~r~g 80 (168)
.+||+||++.+-+ .+.+.|+..|+. .. ...++.||+|+|..+ .+++++..
T Consensus 86 GvL~lDEi~rl~~--------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld-- 149 (589)
T TIGR02031 86 GVLYVDMANLLDD--------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD-- 149 (589)
T ss_pred CcEeccchhhCCH--------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--
Confidence 5899999998732 344455555532 11 123578888888765 79999999
Q ss_pred CcceEEecC-CCCHHHHHHHHHhhcC------------------------CCC-----CHHHHHhCC--CCCC-HHHHHH
Q 030960 81 RLDRKIEFP-LPDRRQKRLVFQMNLS------------------------DEV-----DLEDYVSRP--DKIS-AAEIAA 127 (168)
Q Consensus 81 rf~~~i~~~-~P~~~~R~~il~~~l~------------------------~~~-----~~~~la~~t--~g~s-~~di~~ 127 (168)
||+..+.+. +|...+|.+|++..+. ..+ .+..+++.+ -|.+ .+--..
T Consensus 150 Rf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~ 229 (589)
T TIGR02031 150 RLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLF 229 (589)
T ss_pred hccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHH
Confidence 999988885 5677889998876441 011 111222211 2333 444445
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 128 ICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 128 l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
+++-|...|.-+++..|+.+|+..+..-+.
T Consensus 230 ~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 230 AVRAAKAHAALHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Confidence 566677777778889999999999997654
No 135
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.40 E-value=0.0016 Score=56.11 Aligned_cols=117 Identities=16% Similarity=0.130 Sum_probs=79.1
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCH
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~ 93 (168)
.-|++|||+|.+-. ...+.|+..|+. ...++++|.+|+.++.|.+.+++ |. ..+.|.+++.
T Consensus 119 ~KVvIIDEah~Lt~--------------~A~NALLK~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~ 179 (584)
T PRK14952 119 YRIFIVDEAHMVTT--------------AGFNALLKIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPP 179 (584)
T ss_pred ceEEEEECCCcCCH--------------HHHHHHHHHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCH
Confidence 46999999998831 356678888873 44577788888889999999998 74 6899999999
Q ss_pred HHHHHHHHhhcCC-C--CC---HHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 94 RQKRLVFQMNLSD-E--VD---LEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 94 ~~R~~il~~~l~~-~--~~---~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
++-.+.++..+.. . ++ +..++.. .|-+.++..+++...+... +...|+.+++...+
T Consensus 180 ~~i~~~L~~i~~~egi~i~~~al~~Ia~~-s~GdlR~aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 180 RTMRALIARICEQEGVVVDDAVYPLVIRA-GGGSPRDTLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 8888887754442 2 22 2334443 4557778888777654322 12345555555443
No 136
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.39 E-value=0.0023 Score=49.71 Aligned_cols=123 Identities=16% Similarity=0.092 Sum_probs=74.8
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC-------C-------CCCCeEEEEecCCC-----CCCCc
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-------D-------QTVNVKVIMATNRA-----DTLDP 74 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-------~-------~~~~v~vi~ttn~~-----~~ld~ 74 (168)
+.+|+|||+|.+-+ .+.+.|+..++.- . ..+++.||+|+|.. ..+++
T Consensus 106 g~~lllDEi~r~~~--------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~ 171 (262)
T TIGR02640 106 GFTLVYDEFTRSKP--------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQD 171 (262)
T ss_pred CCEEEEcchhhCCH--------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccH
Confidence 57999999997521 2333344444321 0 12356799999975 36789
Q ss_pred cccCCCCcceEEecCCCCHHHHHHHHHhhcCCCC-CHHH---HHhC------CCCCCHHHHHHHHHHHHHHHHHhCCCcc
Q 030960 75 ALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSDEV-DLED---YVSR------PDKISAAEIAAICQEAGMHAVRKNRYVI 144 (168)
Q Consensus 75 al~r~grf~~~i~~~~P~~~~R~~il~~~l~~~~-~~~~---la~~------t~g~s~~di~~l~~~a~~~a~~~~~~~i 144 (168)
++++ || ..++++.|+.++-.+|++....-+. ..+. ++.. ...++.+..-.+++.+... .....+
T Consensus 172 aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~---~~~~~~ 245 (262)
T TIGR02640 172 ALLD--RL-ITIFMDYPDIDTETAILRAKTDVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQ---DIPVDV 245 (262)
T ss_pred HHHh--hc-EEEECCCCCHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHc---CCCCCC
Confidence 9999 98 6899999999999999987654111 1111 1111 1234444444444444333 335567
Q ss_pred CHHHHHHHHHhh
Q 030960 145 LPKDFEKGYRTN 156 (168)
Q Consensus 145 ~~~d~~~al~~~ 156 (168)
+.+||.+....+
T Consensus 246 ~~~~~~~~~~~~ 257 (262)
T TIGR02640 246 DDEDFVDLCIDI 257 (262)
T ss_pred CcHHHHHHHHHH
Confidence 888888776554
No 137
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0015 Score=53.02 Aligned_cols=89 Identities=16% Similarity=0.192 Sum_probs=64.2
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCC
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P 91 (168)
...-|++|||+|.+-. ...+.+|..++. ...+.++|..|+.++.+.+.+++ |+ ..+.+++|
T Consensus 140 g~~rVviIDeAd~l~~--------------~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl 200 (351)
T PRK09112 140 GNWRIVIIDPADDMNR--------------NAANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPL 200 (351)
T ss_pred CCceEEEEEchhhcCH--------------HHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCC
Confidence 3467999999998831 345667888875 33456666667889999999998 88 69999999
Q ss_pred CHHHHHHHHHhhcCC-CC---CHHHHHhCCCC
Q 030960 92 DRRQKRLVFQMNLSD-EV---DLEDYVSRPDK 119 (168)
Q Consensus 92 ~~~~R~~il~~~l~~-~~---~~~~la~~t~g 119 (168)
+.++-.++++..... .+ .+..++..+.|
T Consensus 201 ~~~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G 232 (351)
T PRK09112 201 DDDELKKALSHLGSSQGSDGEITEALLQRSKG 232 (351)
T ss_pred CHHHHHHHHHHhhcccCCCHHHHHHHHHHcCC
Confidence 999999999863221 11 24456665655
No 138
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.34 E-value=0.004 Score=54.10 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=62.2
Q ss_pred eEEEE-ecCCCCCCCccccCCCCcceEEecCCCCHHHHHHHHHhhcCC-C--C---CHHHHHhCCCCCCHHHHHHHHHHH
Q 030960 60 VKVIM-ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-E--V---DLEDYVSRPDKISAAEIAAICQEA 132 (168)
Q Consensus 60 v~vi~-ttn~~~~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~~-~--~---~~~~la~~t~g~s~~di~~l~~~a 132 (168)
+++|+ ||+.++.+++++++ ||. .+.+++++.++...|++..+.. . + .+..++..+. .++..-+.+.++
T Consensus 324 ~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~ 398 (615)
T TIGR02903 324 FVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADV 398 (615)
T ss_pred EEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHH
Confidence 45554 66779999999998 987 5688999999999999976552 1 1 2334555442 455555555555
Q ss_pred HHHHHHh--------CCCccCHHHHHHHHHhhc
Q 030960 133 GMHAVRK--------NRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 133 ~~~a~~~--------~~~~i~~~d~~~al~~~~ 157 (168)
...++.+ ....|+.+|+.+++..-+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 399 YGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 4443222 223699999999998544
No 139
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00063 Score=59.09 Aligned_cols=84 Identities=29% Similarity=0.349 Sum_probs=57.9
Q ss_pred HHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC---------CC----CCCCeEEEEecCCCCCCCc
Q 030960 8 LAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG---------FD----QTVNVKVIMATNRADTLDP 74 (168)
Q Consensus 8 ~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~~----~~~~v~vi~ttn~~~~ld~ 74 (168)
+.+.. .-+++|||+|.++..- .+... +.+|+.||- +- .-++|++|+|+|.++.||+
T Consensus 501 ~v~t~-NPliLiDEvDKlG~g~--qGDPa--------sALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~ 569 (906)
T KOG2004|consen 501 KVKTE-NPLILIDEVDKLGSGH--QGDPA--------SALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPP 569 (906)
T ss_pred hhCCC-CceEEeehhhhhCCCC--CCChH--------HHHHHhcChhhccchhhhccccccchhheEEEEeccccccCCh
Confidence 33333 4578999999998322 22111 234444442 11 2346999999999999999
Q ss_pred cccCCCCcceEEecCCCCHHHHHHHHHhhcC
Q 030960 75 ALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS 105 (168)
Q Consensus 75 al~r~grf~~~i~~~~P~~~~R~~il~~~l~ 105 (168)
.|+. |. ..|+++=-..++...|-+.||-
T Consensus 570 pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 570 PLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 9998 87 4677777788899999887765
No 140
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.32 E-value=0.0025 Score=57.38 Aligned_cols=117 Identities=19% Similarity=0.275 Sum_probs=77.5
Q ss_pred HHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC--C-------CCCCeEEEEecCCCCC------
Q 030960 7 RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--D-------QTVNVKVIMATNRADT------ 71 (168)
Q Consensus 7 ~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~-------~~~~v~vi~ttn~~~~------ 71 (168)
...+....+||+|||+|.+- . .+.+.|+..++.= . ...+.+||+|||....
T Consensus 661 ~~v~~~p~~vlllDeieka~-----------~---~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~ 726 (852)
T TIGR03346 661 EAVRRKPYSVVLFDEVEKAH-----------P---DVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELA 726 (852)
T ss_pred HHHHcCCCcEEEEeccccCC-----------H---HHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhc
Confidence 34455566899999999652 1 4555666666421 1 1346789999998332
Q ss_pred -------------------CCccccCCCCcceEEecCCCCHHHHHHHHHhhcCC---------------CCCHHHHHhC-
Q 030960 72 -------------------LDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD---------------EVDLEDYVSR- 116 (168)
Q Consensus 72 -------------------ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~~---------------~~~~~~la~~- 116 (168)
+.|.++. |+|..+.|.+++.++..+|+...+.. +-.++.|++.
T Consensus 727 ~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~ 804 (852)
T TIGR03346 727 GGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAG 804 (852)
T ss_pred ccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhC
Confidence 3355665 99999999999999999999754431 1123345554
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHHh
Q 030960 117 -PDKISAAEIAAICQEAGMHAVRK 139 (168)
Q Consensus 117 -t~g~s~~di~~l~~~a~~~a~~~ 139 (168)
...+..+.|.+++++.....+.+
T Consensus 805 ~~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 805 YDPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHH
Confidence 23567788888888876665543
No 141
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.0037 Score=54.37 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=73.0
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcccc
Q 030960 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 2 l~~iF~~a~~~----~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (168)
++++.+.+... ..-|++|||+|.+-. ...+.|+..++. ....+++|++|++++.+.+.++
T Consensus 106 IReii~~a~~~p~~~~~KViIIDEad~Lt~--------------~a~naLLK~LEe--Pp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 106 IRELIERAQFAPVQARWKVYVIDECHMLST--------------AAFNALLKTLEE--PPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred HHHHHHHHhhChhcCCceEEEEECccccCH--------------HHHHHHHHHHhc--CCcCeEEEEEeCChhhhhHHHH
Confidence 46666666432 246999999998731 345678888873 4456777778888999999999
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhcCC---C---CCHHHHHhCCCCCCHHHHHHHHHH
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNLSD---E---VDLEDYVSRPDKISAAEIAAICQE 131 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l~~---~---~~~~~la~~t~g~s~~di~~l~~~ 131 (168)
+ |+ ..+.|..++.++-...+...... . ..+..+++.+.| +.++..++++.
T Consensus 170 S--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr~A~~lLek 225 (620)
T PRK14948 170 S--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLRDAESLLDQ 225 (620)
T ss_pred h--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 8 76 56788888877766655543321 1 235566667665 34666666654
No 142
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.28 E-value=0.0019 Score=53.76 Aligned_cols=71 Identities=30% Similarity=0.392 Sum_probs=47.7
Q ss_pred HHHHHHHHc--CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhcc--------------------CCCCCCCeE
Q 030960 4 DVFRLAKEN--APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMD--------------------GFDQTVNVK 61 (168)
Q Consensus 4 ~iF~~a~~~--~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~--------------------~~~~~~~v~ 61 (168)
++...|+.. .|++|+|||++.--.. ++...+++.|+ .+.-..++.
T Consensus 261 ~~~~~A~~~p~~~~vliIDEINRani~-------------kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~ 327 (459)
T PRK11331 261 NFCQQAKEQPEKKYVFIIDEINRANLS-------------KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVY 327 (459)
T ss_pred HHHHHHHhcccCCcEEEEehhhccCHH-------------HhhhhhhhhccccccccccceeeeccccccccccCCCCeE
Confidence 345666654 4899999999964322 23333333332 234456799
Q ss_pred EEEecCCCC----CCCccccCCCCcceEEecCC
Q 030960 62 VIMATNRAD----TLDPALLRPGRLDRKIEFPL 90 (168)
Q Consensus 62 vi~ttn~~~----~ld~al~r~grf~~~i~~~~ 90 (168)
+|||+|..+ .+|.|++| ||.. +++.+
T Consensus 328 IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 328 IIGLMNTADRSLAVVDYALRR--RFSF-IDIEP 357 (459)
T ss_pred EEEecCccccchhhccHHHHh--hhhe-EEecC
Confidence 999999988 89999999 9965 55543
No 143
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.0023 Score=52.11 Aligned_cols=90 Identities=13% Similarity=0.169 Sum_probs=66.1
Q ss_pred HcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCC
Q 030960 11 ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 90 (168)
Q Consensus 11 ~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~ 90 (168)
...|-|++|||+|.+- ....+.++..++. ...++++|.+|++++.+.+.+++ |+ ..+.|++
T Consensus 139 ~~~~kVviIDead~m~--------------~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~ 199 (365)
T PRK07471 139 EGGWRVVIVDTADEMN--------------ANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRP 199 (365)
T ss_pred cCCCEEEEEechHhcC--------------HHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCC
Confidence 3458899999999772 1456678888873 44467788899999999999887 75 5789999
Q ss_pred CCHHHHHHHHHhhcCCCCC--HHHHHhCCCC
Q 030960 91 PDRRQKRLVFQMNLSDEVD--LEDYVSRPDK 119 (168)
Q Consensus 91 P~~~~R~~il~~~l~~~~~--~~~la~~t~g 119 (168)
|+.++-.+++........+ +..++..+.|
T Consensus 200 l~~~~i~~~L~~~~~~~~~~~~~~l~~~s~G 230 (365)
T PRK07471 200 LAPEDVIDALAAAGPDLPDDPRAALAALAEG 230 (365)
T ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHcCC
Confidence 9999999999876542221 2456666655
No 144
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.24 E-value=0.0081 Score=46.18 Aligned_cols=91 Identities=18% Similarity=0.276 Sum_probs=64.3
Q ss_pred HHHHHHHHH-HcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC--CCCCCeEEEEecCCCCCCCccccC
Q 030960 2 VRDVFRLAK-ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--DQTVNVKVIMATNRADTLDPALLR 78 (168)
Q Consensus 2 l~~iF~~a~-~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~~~~~v~vi~ttn~~~~ld~al~r 78 (168)
|-.+++..+ ...+.|||+||+- |... + .-...|...|+|- ....+|++.||+|+-+-++.....
T Consensus 94 l~~l~~~l~~~~~kFIlf~DDLs--Fe~~-------d----~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d 160 (249)
T PF05673_consen 94 LPELLDLLRDRPYKFILFCDDLS--FEEG-------D----TEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSD 160 (249)
T ss_pred HHHHHHHHhcCCCCEEEEecCCC--CCCC-------c----HHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhh
Confidence 345666655 3458999999854 3211 1 1223455555543 345689999999998888775442
Q ss_pred ----------C-----------CCcceEEecCCCCHHHHHHHHHhhcC
Q 030960 79 ----------P-----------GRLDRKIEFPLPDRRQKRLVFQMNLS 105 (168)
Q Consensus 79 ----------~-----------grf~~~i~~~~P~~~~R~~il~~~l~ 105 (168)
| .||...|.|.+|+.++-.+|++.+..
T Consensus 161 ~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~ 208 (249)
T PF05673_consen 161 REDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAE 208 (249)
T ss_pred ccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHH
Confidence 1 18999999999999999999998885
No 145
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.22 E-value=0.0011 Score=54.67 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=78.5
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCH
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~ 93 (168)
.-|++|||+|.+.. ...+.++..++. ..+..++|.+|+.+..+.+++.+ |+. .++|.+++.
T Consensus 128 ~kvvIIdea~~l~~--------------~~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~ 188 (397)
T PRK14955 128 YRVYIIDEVHMLSI--------------AAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPL 188 (397)
T ss_pred eEEEEEeChhhCCH--------------HHHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCH
Confidence 45999999998741 234556777763 33455566666778889888887 764 788999998
Q ss_pred HHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHH-hCCCccCHHHHHHHH
Q 030960 94 RQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVR-KNRYVILPKDFEKGY 153 (168)
Q Consensus 94 ~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~-~~~~~i~~~d~~~al 153 (168)
++-...++..+.. +..++.++..+.| +.+.+.+.++.....+-. .....|+.+++.+.+
T Consensus 189 ~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 189 EEIQQQLQGICEAEGISVDADALQLIGRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 8888777765431 1234556666654 677777777765544321 123467777776655
No 146
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.002 Score=56.05 Aligned_cols=135 Identities=22% Similarity=0.308 Sum_probs=85.7
Q ss_pred HHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC---------C----CCCCCeEEEEecCCCCCCC
Q 030960 7 RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG---------F----DQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 7 ~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~----~~~~~v~vi~ttn~~~~ld 73 (168)
.+|+... -++++||+|.+...-.+. .. +.||+-||- + -.=++|++|+|+|+.+.||
T Consensus 412 kka~~~N-Pv~LLDEIDKm~ss~rGD---Pa-------SALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP 480 (782)
T COG0466 412 KKAGVKN-PVFLLDEIDKMGSSFRGD---PA-------SALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIP 480 (782)
T ss_pred HHhCCcC-CeEEeechhhccCCCCCC---hH-------HHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCC
Confidence 3444444 578899999997542111 11 234444441 1 1123699999999999999
Q ss_pred ccccCCCCcceEEecCCCCHHHHHHHHHhhcCC-----------CCC-----HHHHHh-CC--CCCCH--HHHHHHHHHH
Q 030960 74 PALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----------EVD-----LEDYVS-RP--DKISA--AEIAAICQEA 132 (168)
Q Consensus 74 ~al~r~grf~~~i~~~~P~~~~R~~il~~~l~~-----------~~~-----~~~la~-~t--~g~s~--~di~~l~~~a 132 (168)
..|+. |. ..|.++--+..+..+|-+.||-+ ++. +..+.. +| .|.-+ +.|..+|+.+
T Consensus 481 ~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~ 557 (782)
T COG0466 481 APLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKA 557 (782)
T ss_pred hHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHH
Confidence 99998 87 46888888999999999866642 121 222222 22 23322 6788888887
Q ss_pred HHHHHHhCCC---ccCHHHHHHHHHh
Q 030960 133 GMHAVRKNRY---VILPKDFEKGYRT 155 (168)
Q Consensus 133 ~~~a~~~~~~---~i~~~d~~~al~~ 155 (168)
+..-+..... .++..++..-+..
T Consensus 558 ~~~i~~~~~k~~~~i~~~~l~~yLG~ 583 (782)
T COG0466 558 AKKILLKKEKSIVKIDEKNLKKYLGV 583 (782)
T ss_pred HHHHHhcCcccceeeCHHHHHHHhCC
Confidence 7666654332 4777777777653
No 147
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.20 E-value=0.0065 Score=47.71 Aligned_cols=126 Identities=18% Similarity=0.143 Sum_probs=92.2
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC----------------CCCCeEEEEecCCCCCCCcccc
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD----------------QTVNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~v~vi~ttn~~~~ld~al~ 77 (168)
..|+|||||+.+.+. +-..+...|+++. .-++..+|++|.+.-.|..-|+
T Consensus 104 ~DVLFIDEIHrl~~~--------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLr 169 (332)
T COG2255 104 GDVLFIDEIHRLSPA--------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLR 169 (332)
T ss_pred CCeEEEehhhhcChh--------------HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhH
Confidence 589999999998532 2223444455441 1235889999999999999999
Q ss_pred CCCCcceEEecCCCCHHHHHHHHH---hhcCC---CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQ---MNLSD---EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~---~~l~~---~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 151 (168)
. ||.....+..-+.++-.+|+. ..+.- +....++|.++.| ||+==-+++++..-.|.-.+...|+.+--.+
T Consensus 170 d--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~ 246 (332)
T COG2255 170 D--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFAQVKGDGDIDRDIADK 246 (332)
T ss_pred H--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 9 999999999999999999997 34442 2335578888876 5665556777777777767777777777777
Q ss_pred HHHhh
Q 030960 152 GYRTN 156 (168)
Q Consensus 152 al~~~ 156 (168)
|++..
T Consensus 247 aL~~L 251 (332)
T COG2255 247 ALKML 251 (332)
T ss_pred HHHHh
Confidence 77653
No 148
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.004 Score=50.04 Aligned_cols=91 Identities=22% Similarity=0.323 Sum_probs=66.1
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC--------CCCCCeEEEEe----cCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--------DQTVNVKVIMA----TNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--------~~~~~v~vi~t----tn~~~~l 72 (168)
..+.|.. -.||||||||.++...+.... +-.-+.+...+|-.++|- -+++++++||+ ...|++|
T Consensus 244 Ai~~aE~--~GIvFIDEIDKIa~~~~~g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDL 319 (444)
T COG1220 244 AIDAAEQ--NGIVFIDEIDKIAKRGGSGGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDL 319 (444)
T ss_pred HHHHHHh--cCeEEEehhhHHHhcCCCCCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhc
Confidence 3344444 479999999999976542221 222245666777777764 24556888885 4668888
Q ss_pred CccccCCCCcceEEecCCCCHHHHHHHHH
Q 030960 73 DPALLRPGRLDRKIEFPLPDRRQKRLVFQ 101 (168)
Q Consensus 73 d~al~r~grf~~~i~~~~P~~~~R~~il~ 101 (168)
=|.|.. ||...+++...+.+.-.+||.
T Consensus 320 iPELQG--RfPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 320 IPELQG--RFPIRVELDALTKEDFERILT 346 (444)
T ss_pred ChhhcC--CCceEEEcccCCHHHHHHHHc
Confidence 889975 999999999999999998886
No 149
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.0018 Score=51.83 Aligned_cols=90 Identities=14% Similarity=0.249 Sum_probs=64.6
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCH
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~ 93 (168)
--|++||++|.+- ....|.+|..++ +...++++|.+|++++.|.|.+++ |+. .+.|++|+.
T Consensus 114 ~kV~iI~~ae~m~--------------~~AaNaLLKtLE--EPp~~~~fiL~~~~~~~lLpTIrS--RCq-~i~~~~~~~ 174 (319)
T PRK08769 114 AQVVIVDPADAIN--------------RAACNALLKTLE--EPSPGRYLWLISAQPARLPATIRS--RCQ-RLEFKLPPA 174 (319)
T ss_pred cEEEEeccHhhhC--------------HHHHHHHHHHhh--CCCCCCeEEEEECChhhCchHHHh--hhe-EeeCCCcCH
Confidence 4699999999883 145677888888 455678888899999999999999 864 567889999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHhCCCCCCH
Q 030960 94 RQKRLVFQMNLSDEVDLEDYVSRPDKISA 122 (168)
Q Consensus 94 ~~R~~il~~~l~~~~~~~~la~~t~g~s~ 122 (168)
++-.+.+...-.+..+...++..+.|--+
T Consensus 175 ~~~~~~L~~~~~~~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 175 HEALAWLLAQGVSERAAQEALDAARGHPG 203 (319)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHcCCCHH
Confidence 88887776432122223345555555444
No 150
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.16 E-value=0.0011 Score=54.83 Aligned_cols=85 Identities=24% Similarity=0.347 Sum_probs=63.0
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC--------CCCCCeEEEEe----cCCCCCCCccccCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--------DQTVNVKVIMA----TNRADTLDPALLRPG 80 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--------~~~~~v~vi~t----tn~~~~ld~al~r~g 80 (168)
+-.||||||+|.++...++. +.+-....+-..||..++|- -.+.++++|++ ...|+++=|.+..
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~--~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G-- 324 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSS--GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG-- 324 (443)
T ss_pred cCCEEEEEcchhhcccCCCC--CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--
Confidence 46899999999999765322 22222246777888888873 13456777774 2457788888886
Q ss_pred CcceEEecCCCCHHHHHHHHH
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQ 101 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~ 101 (168)
||...+.+.+++.++-.+||.
T Consensus 325 R~Pi~v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 325 RFPIRVELDALTEEDFVRILT 345 (443)
T ss_pred ccceEEECCCCCHHHHHHHhc
Confidence 999999999999999999985
No 151
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.0056 Score=53.20 Aligned_cols=101 Identities=18% Similarity=0.219 Sum_probs=70.1
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCH
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~ 93 (168)
.-|++|||+|.+-. ...+.|+..|+. .....++|.+|+.+..|-+.+++ |+ ..+.|.+++.
T Consensus 122 ~KVvIIdea~~Ls~--------------~a~naLLK~LEe--pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~ 182 (614)
T PRK14971 122 YKIYIIDEVHMLSQ--------------AAFNAFLKTLEE--PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQV 182 (614)
T ss_pred cEEEEEECcccCCH--------------HHHHHHHHHHhC--CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCH
Confidence 34999999998831 345678888874 33356666677778899999998 76 4599999999
Q ss_pred HHHHHHHHhhcCC-CC-----CHHHHHhCCCCCCHHHHHHHHHHHHH
Q 030960 94 RQKRLVFQMNLSD-EV-----DLEDYVSRPDKISAAEIAAICQEAGM 134 (168)
Q Consensus 94 ~~R~~il~~~l~~-~~-----~~~~la~~t~g~s~~di~~l~~~a~~ 134 (168)
++-...++..+.. .+ .+..+++.+.| +.+++.+.+.....
T Consensus 183 ~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dlr~al~~Lekl~~ 228 (614)
T PRK14971 183 ADIVNHLQYVASKEGITAEPEALNVIAQKADG-GMRDALSIFDQVVS 228 (614)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 8888777754331 12 35567777744 77777777766543
No 152
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.16 E-value=0.0018 Score=44.23 Aligned_cols=68 Identities=41% Similarity=0.632 Sum_probs=45.3
Q ss_pred HHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC----CCCCeEEEEecCCCC--CCCccccCCC
Q 030960 7 RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD----QTVNVKVIMATNRAD--TLDPALLRPG 80 (168)
Q Consensus 7 ~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----~~~~v~vi~ttn~~~--~ld~al~r~g 80 (168)
..+....+.+|++||++.+.. .....++..+.... ...++.+|+++|... .+++.+..
T Consensus 78 ~~~~~~~~~~lilDe~~~~~~--------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~-- 141 (151)
T cd00009 78 ELAEKAKPGVLFIDEIDSLSR--------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD-- 141 (151)
T ss_pred HhhccCCCeEEEEeChhhhhH--------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--
Confidence 344455699999999998721 11223333333322 245788899998887 78888887
Q ss_pred CcceEEecCC
Q 030960 81 RLDRKIEFPL 90 (168)
Q Consensus 81 rf~~~i~~~~ 90 (168)
||+..+.+++
T Consensus 142 r~~~~i~~~~ 151 (151)
T cd00009 142 RLDIRIVIPL 151 (151)
T ss_pred hhccEeecCC
Confidence 9998888763
No 153
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.15 E-value=0.0042 Score=55.92 Aligned_cols=116 Identities=19% Similarity=0.278 Sum_probs=75.8
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC---------CCCCeEEEEecCCCC------
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD---------QTVNVKVIMATNRAD------ 70 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vi~ttn~~~------ 70 (168)
.+..+++.++||+|||+|..- . .+.+.|+..++.-. ...+.++|+|||...
T Consensus 661 ~~~v~~~p~svvllDEieka~-----------~---~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~ 726 (852)
T TIGR03345 661 TEAVRRKPYSVVLLDEVEKAH-----------P---DVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMAL 726 (852)
T ss_pred HHHHHhCCCcEEEEechhhcC-----------H---HHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHh
Confidence 455567788999999998542 1 45556666665321 124688999998522
Q ss_pred -----------------------CCCccccCCCCcceEEecCCCCHHHHHHHHHhhcCC----------------CCCHH
Q 030960 71 -----------------------TLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD----------------EVDLE 111 (168)
Q Consensus 71 -----------------------~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~~----------------~~~~~ 111 (168)
.+.|+++. |++ .|.|.+.+.++-.+|+...+.. +..++
T Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~ 803 (852)
T TIGR03345 727 CADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVE 803 (852)
T ss_pred ccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHH
Confidence 14566666 887 8899999999999999755431 11234
Q ss_pred HHHhCCC--CCCHHHHHHHHHHHHHHHHH
Q 030960 112 DYVSRPD--KISAAEIAAICQEAGMHAVR 138 (168)
Q Consensus 112 ~la~~t~--g~s~~di~~l~~~a~~~a~~ 138 (168)
.|++... .|-.+.|.++++.-...++.
T Consensus 804 ~La~~g~~~~~GAR~L~r~Ie~~i~~~la 832 (852)
T TIGR03345 804 HIVARCTEVESGARNIDAILNQTLLPELS 832 (852)
T ss_pred HHHHHcCCCCCChHHHHHHHHHHHHHHHH
Confidence 4665543 36678888887775554443
No 154
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.14 E-value=0.0016 Score=52.25 Aligned_cols=71 Identities=23% Similarity=0.376 Sum_probs=51.3
Q ss_pred eEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC----------CCCCCCeEEEEecC-----CCCCCCccccCC
Q 030960 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG----------FDQTVNVKVIMATN-----RADTLDPALLRP 79 (168)
Q Consensus 15 ~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~----------~~~~~~v~vi~ttn-----~~~~ld~al~r~ 79 (168)
+|+++|||+..- . .+.+.++..|+. +.-....+||+|+| ....+++|+++
T Consensus 114 ~ill~DEInra~-----------p---~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld- 178 (329)
T COG0714 114 VILLLDEINRAP-----------P---EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD- 178 (329)
T ss_pred eEEEEeccccCC-----------H---HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh-
Confidence 599999999642 2 444555555554 22335688999989 77789999999
Q ss_pred CCcceEEecCCC-CHHHHHHHHH
Q 030960 80 GRLDRKIEFPLP-DRRQKRLVFQ 101 (168)
Q Consensus 80 grf~~~i~~~~P-~~~~R~~il~ 101 (168)
||-..+++++| ...+...+..
T Consensus 179 -Rf~~~~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 179 -RFLLRIYVDYPDSEEEERIILA 200 (329)
T ss_pred -hEEEEEecCCCCchHHHHHHHH
Confidence 99999999999 5555555554
No 155
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.11 E-value=0.0018 Score=56.11 Aligned_cols=97 Identities=13% Similarity=0.222 Sum_probs=65.7
Q ss_pred CeEEEEecCCC--CCCCccccCCCCcc---eEEecC---CCCHHHHHHHHHh---hc-----CCCCCHH---HHH---hC
Q 030960 59 NVKVIMATNRA--DTLDPALLRPGRLD---RKIEFP---LPDRRQKRLVFQM---NL-----SDEVDLE---DYV---SR 116 (168)
Q Consensus 59 ~v~vi~ttn~~--~~ld~al~r~grf~---~~i~~~---~P~~~~R~~il~~---~l-----~~~~~~~---~la---~~ 116 (168)
.+.+|+++|.. ..+++.++. ||+ ..+.++ +++.+.|..+.+. .+ .+.++-+ .+. .+
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 57788888863 689999999 999 666664 3355666555441 11 1122222 222 11
Q ss_pred CC------CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 117 PD------KISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 117 t~------g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
.. ..+.++|.++++.|...|..++...|+.+|+.+|++...
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 11 256799999999998777777888999999999987554
No 156
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.11 E-value=0.0024 Score=51.43 Aligned_cols=76 Identities=12% Similarity=0.168 Sum_probs=61.7
Q ss_pred HHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEec
Q 030960 9 AKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEF 88 (168)
Q Consensus 9 a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~ 88 (168)
......-|++||++|.+- ....|.||..|+ +...++++|.+|++++.|.|.+++ |.. .+.|
T Consensus 104 ~~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~ 164 (334)
T PRK07993 104 ARLGGAKVVWLPDAALLT--------------DAAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR-LHYL 164 (334)
T ss_pred cccCCceEEEEcchHhhC--------------HHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc-cccC
Confidence 334456799999999874 155678999998 466689999999999999999999 887 5799
Q ss_pred CCCCHHHHHHHHHhh
Q 030960 89 PLPDRRQKRLVFQMN 103 (168)
Q Consensus 89 ~~P~~~~R~~il~~~ 103 (168)
++|+.++-.+.+...
T Consensus 165 ~~~~~~~~~~~L~~~ 179 (334)
T PRK07993 165 APPPEQYALTWLSRE 179 (334)
T ss_pred CCCCHHHHHHHHHHc
Confidence 999999988887643
No 157
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.10 E-value=0.0048 Score=53.80 Aligned_cols=127 Identities=17% Similarity=0.206 Sum_probs=82.0
Q ss_pred eEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC---------C--CCCCCeEEEEecCCC-CCCCccccCCCCc
Q 030960 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG---------F--DQTVNVKVIMATNRA-DTLDPALLRPGRL 82 (168)
Q Consensus 15 ~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~--~~~~~v~vi~ttn~~-~~ld~al~r~grf 82 (168)
.||||||++.+-. .+.+.|+..|+. . ....++.+|+|+|-- ..++++|+. ||
T Consensus 128 GiL~lDEi~~l~~--------------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~ 191 (633)
T TIGR02442 128 GILYIDEVNLLDD--------------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RF 191 (633)
T ss_pred CeEEeChhhhCCH--------------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hc
Confidence 5999999998731 344455555531 1 112358889988843 358889999 99
Q ss_pred ceEEecCCCC-HHHHHHHHHhhcCC------------------------------CC-----CHHHHHhCC--CCC-CHH
Q 030960 83 DRKIEFPLPD-RRQKRLVFQMNLSD------------------------------EV-----DLEDYVSRP--DKI-SAA 123 (168)
Q Consensus 83 ~~~i~~~~P~-~~~R~~il~~~l~~------------------------------~~-----~~~~la~~t--~g~-s~~ 123 (168)
+..+.++.|. .++|.++++..+.. .+ .+..++..+ -|. +.+
T Consensus 192 ~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~R 271 (633)
T TIGR02442 192 GLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHR 271 (633)
T ss_pred ceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCcc
Confidence 9999998774 67788887643220 01 011122211 234 345
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 124 EIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 124 di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
-...+++-|...|.-++...|+.+|+.+|+.-+.
T Consensus 272 a~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 272 ADIVMARAARALAALDGRRRVTAEDVREAAELVL 305 (633)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHh
Confidence 5555667777777788889999999999987654
No 158
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.0086 Score=50.77 Aligned_cols=103 Identities=18% Similarity=0.280 Sum_probs=77.9
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
..-|.+|||++-+- ....|.||..++ +...+|.+|.+|..++.+|+.+++ |+. .+.|..-+
T Consensus 119 ryKVyiIDEvHMLS--------------~~afNALLKTLE--EPP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~ 179 (515)
T COG2812 119 RYKVYIIDEVHMLS--------------KQAFNALLKTLE--EPPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLD 179 (515)
T ss_pred cceEEEEecHHhhh--------------HHHHHHHhcccc--cCccCeEEEEecCCcCcCchhhhh--ccc-cccccCCC
Confidence 36799999998763 267888998888 566689999999999999999998 753 46777788
Q ss_pred HHHHHHHHHhhcCC-CC-----CHHHHHhCCCCCCHHHHHHHHHHHHHH
Q 030960 93 RRQKRLVFQMNLSD-EV-----DLEDYVSRPDKISAAEIAAICQEAGMH 135 (168)
Q Consensus 93 ~~~R~~il~~~l~~-~~-----~~~~la~~t~g~s~~di~~l~~~a~~~ 135 (168)
.++-...+...+.. .+ .+.-+|...+| |.+|-.+++..+...
T Consensus 180 ~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslLDq~i~~ 227 (515)
T COG2812 180 LEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLLDQAIAF 227 (515)
T ss_pred HHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHHHHHHHc
Confidence 88888888766652 22 34456666666 778888888877544
No 159
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.08 E-value=0.0053 Score=49.92 Aligned_cols=135 Identities=20% Similarity=0.303 Sum_probs=85.3
Q ss_pred HHHHHHHHHHc-----CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEE-ecCCCC-CCCc
Q 030960 2 VRDVFRLAKEN-----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIM-ATNRAD-TLDP 74 (168)
Q Consensus 2 l~~iF~~a~~~-----~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~-ttn~~~-~ld~ 74 (168)
+|.+|+.|+.. ...||||||++.+-.. ....||-.++ ...|.+|+ ||.+|. .+..
T Consensus 206 vR~ife~aq~~~~l~krkTilFiDEiHRFNks--------------QQD~fLP~VE----~G~I~lIGATTENPSFqln~ 267 (554)
T KOG2028|consen 206 VRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS--------------QQDTFLPHVE----NGDITLIGATTENPSFQLNA 267 (554)
T ss_pred HHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh--------------hhhcccceec----cCceEEEecccCCCccchhH
Confidence 58899999843 3899999999987311 1123444443 45677887 445554 7888
Q ss_pred cccCCCCcceEEecCCCCHHHHHHHHHhhcC-------------C------CCCHHHHHhCCCCCCHHHHHHHHHHHHHH
Q 030960 75 ALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS-------------D------EVDLEDYVSRPDKISAAEIAAICQEAGMH 135 (168)
Q Consensus 75 al~r~grf~~~i~~~~P~~~~R~~il~~~l~-------------~------~~~~~~la~~t~g~s~~di~~l~~~a~~~ 135 (168)
+|++ |+ .++.+.......-..|+...+. . +..++.++..++|=.-+-|..+=-.+.+.
T Consensus 268 aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~ 344 (554)
T KOG2028|consen 268 ALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMF 344 (554)
T ss_pred HHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 9998 54 3566677777777777764222 1 12356788888875555554332222333
Q ss_pred HHHhC---CCccCHHHHHHHHHhhc
Q 030960 136 AVRKN---RYVILPKDFEKGYRTNV 157 (168)
Q Consensus 136 a~~~~---~~~i~~~d~~~al~~~~ 157 (168)
+.+.+ +..++.+|+.+.+.+..
T Consensus 345 ~tr~g~~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 345 CTRSGQSSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred HhhcCCcccceecHHHHHHHHhhcc
Confidence 44444 35789999999987643
No 160
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.07 E-value=0.0082 Score=52.18 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=78.8
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCH
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~ 93 (168)
.-|++|||+|.+.. ...+.|+..|+. ....+++|.+|+.+..|.+.+++ |. ..++|.+++.
T Consensus 128 ~KVvIIdEad~Lt~--------------~a~naLLK~LEe--Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~ 188 (620)
T PRK14954 128 YRVYIIDEVHMLST--------------AAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPL 188 (620)
T ss_pred CEEEEEeChhhcCH--------------HHHHHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCH
Confidence 46999999998731 235668888874 33356666666778999999887 65 5899999999
Q ss_pred HHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHH-hCCCccCHHHHHHHH
Q 030960 94 RQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVR-KNRYVILPKDFEKGY 153 (168)
Q Consensus 94 ~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~-~~~~~i~~~d~~~al 153 (168)
++-...++..+.. +..++.++..+.| +.+++.+.++.....+.. .....|+.+++.+.+
T Consensus 189 ~ei~~~L~~i~~~egi~I~~eal~~La~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 189 DEIQSQLQMICRAEGIQIDADALQLIARKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 8887777654431 2235567777755 667777766655444321 123457776666554
No 161
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.07 E-value=0.0021 Score=48.79 Aligned_cols=102 Identities=20% Similarity=0.217 Sum_probs=65.7
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC-----C-----------CCCeEEEEecCCCCCCCccc
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-----Q-----------TVNVKVIMATNRADTLDPAL 76 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~-----------~~~v~vi~ttn~~~~ld~al 76 (168)
...||||||++.+-. .+-..|+..|++.. + -++..+|++|++...|.+.+
T Consensus 101 ~~~ILFIDEIHRlnk--------------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pL 166 (233)
T PF05496_consen 101 EGDILFIDEIHRLNK--------------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPL 166 (233)
T ss_dssp TT-EEEECTCCC--H--------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCC
T ss_pred CCcEEEEechhhccH--------------HHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhH
Confidence 468999999998831 23334566665431 1 13488999999999999999
Q ss_pred cCCCCcceEEecCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHH
Q 030960 77 LRPGRLDRKIEFPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQE 131 (168)
Q Consensus 77 ~r~grf~~~i~~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~ 131 (168)
+. ||.....+..-+.++-.+|++..-. ++....++|.++.| ||+=--++++.
T Consensus 167 rd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~r 224 (233)
T PF05496_consen 167 RD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRR 224 (233)
T ss_dssp CT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHH
T ss_pred Hh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 99 9999999999999999999973322 22335578888876 55544445443
No 162
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.03 E-value=0.0091 Score=53.63 Aligned_cols=118 Identities=17% Similarity=0.202 Sum_probs=77.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC---------CCCCeEEEEecCCCCC----
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD---------QTVNVKVIMATNRADT---- 71 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vi~ttn~~~~---- 71 (168)
+.+..+....+||+|||+|..- + .+.+.|+..++.-. ..++.++|+|||....
T Consensus 603 l~~~~~~~p~~VvllDeieka~-----------~---~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~ 668 (821)
T CHL00095 603 LTEAVRKKPYTVVLFDEIEKAH-----------P---DIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIET 668 (821)
T ss_pred HHHHHHhCCCeEEEECChhhCC-----------H---HHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHh
Confidence 4555666666999999999752 1 45666776666311 1346889999996432
Q ss_pred ---------------------------------CCccccCCCCcceEEecCCCCHHHHHHHHHhhcCC------------
Q 030960 72 ---------------------------------LDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD------------ 106 (168)
Q Consensus 72 ---------------------------------ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~~------------ 106 (168)
+.|.++. |+|.++.|.+.+.++-.+|++..+..
T Consensus 669 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l 746 (821)
T CHL00095 669 NSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQL 746 (821)
T ss_pred hccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEE
Confidence 1244565 99999999999999999998755541
Q ss_pred ---CCCHHHHHhC--CCCCCHHHHHHHHHHHHHHHHH
Q 030960 107 ---EVDLEDYVSR--PDKISAAEIAAICQEAGMHAVR 138 (168)
Q Consensus 107 ---~~~~~~la~~--t~g~s~~di~~l~~~a~~~a~~ 138 (168)
+-..+.+++. ...|-.+-|.++++.-...++.
T Consensus 747 ~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~ 783 (821)
T CHL00095 747 EVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLA 783 (821)
T ss_pred EECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHH
Confidence 1123445654 2456677777777765544443
No 163
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.0072 Score=48.49 Aligned_cols=73 Identities=14% Similarity=0.270 Sum_probs=58.8
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCC
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P 91 (168)
...-|++||++|.+-. ...|.||..++ +...++++|.+|++++.|.|.+++ |. ..+.|++|
T Consensus 106 g~~KV~iI~~a~~m~~--------------~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~ 166 (325)
T PRK06871 106 GGNKVVYIQGAERLTE--------------AAANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--RC-QTWLIHPP 166 (325)
T ss_pred CCceEEEEechhhhCH--------------HHHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--hc-eEEeCCCC
Confidence 3456899999998731 45678899998 466688999999999999999998 76 45789999
Q ss_pred CHHHHHHHHHhh
Q 030960 92 DRRQKRLVFQMN 103 (168)
Q Consensus 92 ~~~~R~~il~~~ 103 (168)
+.++-.+.+...
T Consensus 167 ~~~~~~~~L~~~ 178 (325)
T PRK06871 167 EEQQALDWLQAQ 178 (325)
T ss_pred CHHHHHHHHHHH
Confidence 999888887754
No 164
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.94 E-value=0.01 Score=48.07 Aligned_cols=126 Identities=21% Similarity=0.283 Sum_probs=86.6
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCC------------CCCCCccccCCCC
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR------------ADTLDPALLRPGR 81 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~------------~~~ld~al~r~gr 81 (168)
|.|+||||++-|=- ..++-|-..|+ ..-.++ +|.+||+ |+-||..++. |
T Consensus 292 pGVLFIDEvHmLDI--------------E~FsFlnrAlE--se~aPI-ii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHMLDI--------------ECFSFLNRALE--SELAPI-IILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhhhH--------------HHHHHHHHHhh--cccCcE-EEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 99999999987621 23333333343 122234 5555653 5667766665 5
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-C-----CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-D-----EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-~-----~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
. ..|...+-+.++..+|++.-.. . +-.++.|+..-..-|-+--.+|+.-|...|-+++...+..+|+++|.+-
T Consensus 353 l-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred e-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 3 3455567788889999984443 2 3345667777777788888888888999999999999999999999887
Q ss_pred hcCC
Q 030960 156 NVKK 159 (168)
Q Consensus 156 ~~p~ 159 (168)
+.-.
T Consensus 432 F~D~ 435 (450)
T COG1224 432 FLDV 435 (450)
T ss_pred HhhH
Confidence 6543
No 165
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0099 Score=50.45 Aligned_cols=94 Identities=18% Similarity=0.244 Sum_probs=66.9
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCC-CCCeEEEEecCCCCCCCc-cccCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQ-TVNVKVIMATNRADTLDP-ALLRP 79 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~v~vi~ttn~~~~ld~-al~r~ 79 (168)
|+.+|+-|.+..-+||++|++|.|..-- .-.....+.++..++..+..... ..+.+|++||+..+-+-. .+..
T Consensus 587 i~k~F~DAYkS~lsiivvDdiErLiD~v----pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~- 661 (744)
T KOG0741|consen 587 IKKIFEDAYKSPLSIIVVDDIERLLDYV----PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD- 661 (744)
T ss_pred HHHHHHHhhcCcceEEEEcchhhhhccc----ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH-
Confidence 6899999999999999999999987321 11112334666677777776543 346888888887665554 3444
Q ss_pred CCcceEEecCCCCH-HHHHHHHH
Q 030960 80 GRLDRKIEFPLPDR-RQKRLVFQ 101 (168)
Q Consensus 80 grf~~~i~~~~P~~-~~R~~il~ 101 (168)
.|+..+++|..+. ++-.+++.
T Consensus 662 -~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 662 -CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred -hhhheeecCccCchHHHHHHHH
Confidence 7999999998766 56666665
No 166
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.0038 Score=49.93 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=58.9
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
..-|++||++|.+- ....|.||..++ +...++++|.+|++++.|.|.+++ |.. .+.|++|+
T Consensus 108 ~~kV~iI~~ae~m~--------------~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~ 168 (319)
T PRK06090 108 GYRLFVIEPADAMN--------------ESASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVS--RCQ-QWVVTPPS 168 (319)
T ss_pred CceEEEecchhhhC--------------HHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--cce-eEeCCCCC
Confidence 35799999999873 155678999998 466679999999999999999999 875 78999999
Q ss_pred HHHHHHHHHh
Q 030960 93 RRQKRLVFQM 102 (168)
Q Consensus 93 ~~~R~~il~~ 102 (168)
.++..+.+..
T Consensus 169 ~~~~~~~L~~ 178 (319)
T PRK06090 169 TAQAMQWLKG 178 (319)
T ss_pred HHHHHHHHHH
Confidence 9998888764
No 167
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.85 E-value=0.0052 Score=50.85 Aligned_cols=85 Identities=26% Similarity=0.339 Sum_probs=62.1
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC--------CCCCCeEEEEec----CCCCCCCccccCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--------DQTVNVKVIMAT----NRADTLDPALLRPG 80 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--------~~~~~v~vi~tt----n~~~~ld~al~r~g 80 (168)
+-.||||||+|.++....... .+-....+...||..+++- -.+.++++|++- ..|.++=|.+..
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~--~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G-- 322 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSG--ADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG-- 322 (441)
T ss_pred cCCEEEEEchhhhcccCCCCC--CCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--
Confidence 468999999999996652221 1222235677888888773 134568777743 357777778875
Q ss_pred CcceEEecCCCCHHHHHHHHH
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQ 101 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~ 101 (168)
||...+.+.+++.++-..||.
T Consensus 323 R~Pi~v~L~~L~~edL~rILt 343 (441)
T TIGR00390 323 RFPIRVELQALTTDDFERILT 343 (441)
T ss_pred ccceEEECCCCCHHHHHHHhc
Confidence 999999999999999999985
No 168
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.83 E-value=0.0067 Score=48.63 Aligned_cols=112 Identities=11% Similarity=0.122 Sum_probs=71.9
Q ss_pred HHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHh-----ccC----CCCCCCeEEEEecCCCC--------
Q 030960 8 LAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQ-----MDG----FDQTVNVKVIMATNRAD-------- 70 (168)
Q Consensus 8 ~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~-----l~~----~~~~~~v~vi~ttn~~~-------- 70 (168)
.|.. .++++++||+|..- ......++.+|.. +.+ +...+...||||+|...
T Consensus 130 ~A~~-~g~illlDEin~a~-----------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y 197 (327)
T TIGR01650 130 WALQ-HNVALCFDEYDAGR-----------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLY 197 (327)
T ss_pred hHHh-CCeEEEechhhccC-----------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcce
Confidence 3433 47999999999762 1222444445442 111 12344688999999755
Q ss_pred ----CCCccccCCCCcceEEecCCCCHHHHHHHHHhhcCCCC---------CHHHHHhC----------CCCCCHHHHHH
Q 030960 71 ----TLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSDEV---------DLEDYVSR----------PDKISAAEIAA 127 (168)
Q Consensus 71 ----~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~~~~---------~~~~la~~----------t~g~s~~di~~ 127 (168)
.++.|++. ||-.++.+++|+.++-.+|+......-. .+-++|.. ..|+|++.+..
T Consensus 198 ~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~ 275 (327)
T TIGR01650 198 HGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVIT 275 (327)
T ss_pred eeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHH
Confidence 45889998 9999999999999999999875432100 01112222 34678888888
Q ss_pred HHHHHH
Q 030960 128 ICQEAG 133 (168)
Q Consensus 128 l~~~a~ 133 (168)
..+.+.
T Consensus 276 w~~~~~ 281 (327)
T TIGR01650 276 WAENAE 281 (327)
T ss_pred HHHHHH
Confidence 777654
No 169
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.82 E-value=0.024 Score=45.13 Aligned_cols=89 Identities=15% Similarity=0.198 Sum_probs=63.8
Q ss_pred CCCCCccccCCCCcceEEecCCCCHHHHHHHHHh-hcCCCCC-----HHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 030960 69 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQM-NLSDEVD-----LEDYVSRPDKISAAEIAAICQEAGMHAVRKNRY 142 (168)
Q Consensus 69 ~~~ld~al~r~grf~~~i~~~~P~~~~R~~il~~-~l~~~~~-----~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~ 142 (168)
|.-||-.++. |. ..|...+-+.++-.+||+. |..+++. ++.|......-|.+---+++..|...|.++...
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 5667766665 53 3455566788888999984 4454443 333444444557777778889999999999999
Q ss_pred ccCHHHHHHHHHhhcCCC
Q 030960 143 VILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 143 ~i~~~d~~~al~~~~p~~ 160 (168)
.+..+|+..+++-+.-..
T Consensus 416 ~v~~~di~r~y~LFlD~~ 433 (454)
T KOG2680|consen 416 VVEVDDIERVYRLFLDEK 433 (454)
T ss_pred eeehhHHHHHHHHHhhhh
Confidence 999999999998776544
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.76 E-value=0.0063 Score=41.05 Aligned_cols=80 Identities=30% Similarity=0.417 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCC-CCCCCccccCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR-ADTLDPALLRPG 80 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~-~~~ld~al~r~g 80 (168)
++.+++.|+...|.+|++||++.+........ .................+..+|+++|. ....+..+.+
T Consensus 67 ~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-- 136 (148)
T smart00382 67 LRLALALARKLKPDVLILDEITSLLDAEQEAL--------LLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-- 136 (148)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHH--------HHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--
Confidence 35678888888889999999999864331100 000000000111123446778888886 4555555655
Q ss_pred CcceEEecCCC
Q 030960 81 RLDRKIEFPLP 91 (168)
Q Consensus 81 rf~~~i~~~~P 91 (168)
|++..+.++.+
T Consensus 137 ~~~~~~~~~~~ 147 (148)
T smart00382 137 RFDRRIVLLLI 147 (148)
T ss_pred ccceEEEecCC
Confidence 89999888665
No 171
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.75 E-value=0.016 Score=45.82 Aligned_cols=94 Identities=13% Similarity=0.264 Sum_probs=61.8
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCH
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~ 93 (168)
.-|++||++|.+.. ...|.||..++ +...++++|.+|++++.|.|.+++ |. ..+.|+. +.
T Consensus 105 ~kV~II~~ad~m~~--------------~AaNaLLKtLE--EPp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~ 164 (290)
T PRK07276 105 QQVFIIKDADKMHV--------------NAANSLLKVIE--EPQSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK-NE 164 (290)
T ss_pred cEEEEeehhhhcCH--------------HHHHHHHHHhc--CCCCCeEEEEEECChhhCchHHHH--cc-eeeeCCC-cH
Confidence 57999999998741 45677888888 455678899999999999999999 86 4566655 55
Q ss_pred HHHHHHHHhhcCCCCCHHHHHhCCCCCCHHHHHHHH
Q 030960 94 RQKRLVFQMNLSDEVDLEDYVSRPDKISAAEIAAIC 129 (168)
Q Consensus 94 ~~R~~il~~~l~~~~~~~~la~~t~g~s~~di~~l~ 129 (168)
++-.+++... +-+.+...++....| +++....+.
T Consensus 165 ~~~~~~L~~~-g~~~~~a~~la~~~~-s~~~A~~l~ 198 (290)
T PRK07276 165 AYLIQLLEQK-GLLKTQAELLAKLAQ-STSEAEKLA 198 (290)
T ss_pred HHHHHHHHHc-CCChHHHHHHHHHCC-CHHHHHHHh
Confidence 5555555422 111122233334445 566555555
No 172
>PRK09862 putative ATP-dependent protease; Provisional
Probab=96.70 E-value=0.051 Score=46.21 Aligned_cols=125 Identities=19% Similarity=0.237 Sum_probs=81.2
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC-------C----CCCCCeEEEEecCCCC------------
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-------F----DQTVNVKVIMATNRAD------------ 70 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-------~----~~~~~v~vi~ttn~~~------------ 70 (168)
..++|+||++.+-. .+...+++.|+. . ....++.+|+|+|-..
T Consensus 295 gGvLfLDEi~e~~~--------------~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~ 360 (506)
T PRK09862 295 NGVLFLDELPEFER--------------RTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCT 360 (506)
T ss_pred CCEEecCCchhCCH--------------HHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcC
Confidence 47999999986521 344444444421 1 1133588999998742
Q ss_pred ---------CCCccccCCCCcceEEecCCCCHHH----------HHHHHH-------------hhcCCCCCHHHH-----
Q 030960 71 ---------TLDPALLRPGRLDRKIEFPLPDRRQ----------KRLVFQ-------------MNLSDEVDLEDY----- 113 (168)
Q Consensus 71 ---------~ld~al~r~grf~~~i~~~~P~~~~----------R~~il~-------------~~l~~~~~~~~l----- 113 (168)
.++..++. |||..+.++.|+.++ +.++-+ ..+.....-..+
T Consensus 361 ~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~ 438 (506)
T PRK09862 361 PEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCK 438 (506)
T ss_pred HHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhC
Confidence 46778888 999999999885321 111211 011111111111
Q ss_pred -----------HhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 114 -----------VSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 114 -----------a~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
+...-|+|++....+++-|...|.-++...|+.+|+.+|+.
T Consensus 439 l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 439 LESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVS 490 (506)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 11234789999999999999999999999999999999986
No 173
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.62 E-value=0.014 Score=46.82 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=54.8
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCH
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~ 93 (168)
.-|++|||+|.+- ....+.|+..++. ..+++++|.+|+.+..|.+.+++ |. ..++|.+|+.
T Consensus 111 ~kvviI~~a~~~~--------------~~a~NaLLK~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~ 171 (329)
T PRK08058 111 KKVYIIEHADKMT--------------ASAANSLLKFLEE--PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPP 171 (329)
T ss_pred ceEEEeehHhhhC--------------HHHHHHHHHHhcC--CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCH
Confidence 4599999998773 1455678888884 45577777888899999999998 65 5788999999
Q ss_pred HHHHHHHHh
Q 030960 94 RQKRLVFQM 102 (168)
Q Consensus 94 ~~R~~il~~ 102 (168)
++-.+.++.
T Consensus 172 ~~~~~~L~~ 180 (329)
T PRK08058 172 ESLIQRLQE 180 (329)
T ss_pred HHHHHHHHH
Confidence 888777764
No 174
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0082 Score=53.12 Aligned_cols=88 Identities=22% Similarity=0.329 Sum_probs=63.3
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC-----CCCccc
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPAL 76 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~al 76 (168)
++.+.+..+...+.|+||||++.+.+..+..+. .....+++.-. + ....+-+||+|+.-+ .=|+||
T Consensus 251 lk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~DAaNiLKPa---L----ARGeL~~IGATT~~EYRk~iEKD~AL 321 (786)
T COG0542 251 LKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG--AMDAANLLKPA---L----ARGELRCIGATTLDEYRKYIEKDAAL 321 (786)
T ss_pred HHHHHHHHhcCCCeEEEEechhhhcCCCccccc--ccchhhhhHHH---H----hcCCeEEEEeccHHHHHHHhhhchHH
Confidence 567778888888999999999999977644331 11112333322 2 244566888887544 458899
Q ss_pred cCCCCcceEEecCCCCHHHHHHHHH
Q 030960 77 LRPGRLDRKIEFPLPDRRQKRLVFQ 101 (168)
Q Consensus 77 ~r~grf~~~i~~~~P~~~~R~~il~ 101 (168)
-| ||. .|.+..|+.++-..|++
T Consensus 322 ~R--RFQ-~V~V~EPs~e~ti~ILr 343 (786)
T COG0542 322 ER--RFQ-KVLVDEPSVEDTIAILR 343 (786)
T ss_pred Hh--cCc-eeeCCCCCHHHHHHHHH
Confidence 99 996 58899999999999997
No 175
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.54 E-value=0.012 Score=46.89 Aligned_cols=88 Identities=9% Similarity=0.166 Sum_probs=62.9
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
+.-|++||++|.+- ....+.++..++. ..+++++|.+|++++.+.+.+++ |. ..++|++|+
T Consensus 93 ~~kv~iI~~ad~m~--------------~~a~naLLK~LEe--pp~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~ 153 (313)
T PRK05564 93 DKKVIIIYNSEKMT--------------EQAQNAFLKTIEE--PPKGVFIILLCENLEQILDTIKS--RC-QIYKLNRLS 153 (313)
T ss_pred CceEEEEechhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcC
Confidence 35699999998762 1345678888884 44567777777889999999998 77 489999999
Q ss_pred HHHHHHHHHhhcC--CCCCHHHHHhCCCC
Q 030960 93 RRQKRLVFQMNLS--DEVDLEDYVSRPDK 119 (168)
Q Consensus 93 ~~~R~~il~~~l~--~~~~~~~la~~t~g 119 (168)
.++-...++..+. +...+..++..+.|
T Consensus 154 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~g 182 (313)
T PRK05564 154 KEEIEKFISYKYNDIKEEEKKSAIAFSDG 182 (313)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHcCC
Confidence 9998888875542 12223445555555
No 176
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.44 E-value=0.038 Score=44.15 Aligned_cols=97 Identities=14% Similarity=0.224 Sum_probs=68.0
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
..-|++||++|.+-. ...+.||..|+... +.++|.+|++++.|.|.+++ |. ..+.|++|+
T Consensus 124 ~~kVvII~~ae~m~~--------------~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~ 183 (314)
T PRK07399 124 PRKVVVIEDAETMNE--------------AAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLS 183 (314)
T ss_pred CceEEEEEchhhcCH--------------HHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCC
Confidence 468999999987731 45567888887533 44567777899999999999 86 688999999
Q ss_pred HHHHHHHHHhhcC-CCCC--HHHHHhCCCCCCHHHHHHHHH
Q 030960 93 RRQKRLVFQMNLS-DEVD--LEDYVSRPDKISAAEIAAICQ 130 (168)
Q Consensus 93 ~~~R~~il~~~l~-~~~~--~~~la~~t~g~s~~di~~l~~ 130 (168)
.++-.+++..... +..+ ...++....| +++...++++
T Consensus 184 ~~~~~~~L~~~~~~~~~~~~~~~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 184 DEQLEQVLKRLGDEEILNINFPELLALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHHHHHHHHhhccccchhHHHHHHHHcCC-CHHHHHHHHH
Confidence 9999999986543 2222 3566666655 4434333333
No 177
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.35 E-value=0.0048 Score=46.00 Aligned_cols=92 Identities=21% Similarity=0.348 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcC-CeEEEEccccccc-ccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC------CCC
Q 030960 2 VRDVFRLAKENA-PAIIFIDEVDAIA-TARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD------TLD 73 (168)
Q Consensus 2 l~~iF~~a~~~~-p~ii~iDe~D~l~-~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~------~ld 73 (168)
+..+++...... ..||+|||+|.+. ..+ .. ...+..+.+.++......++.+|.+++... .-.
T Consensus 106 l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~---~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~ 176 (234)
T PF01637_consen 106 LERLLEKLKKKGKKVIIVIDEFQYLAIASE------ED---KDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDK 176 (234)
T ss_dssp HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TT---HHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TT
T ss_pred HHHHHHHHHhcCCcEEEEEecHHHHhhccc------ch---HHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhccc
Confidence 456666666554 5999999999997 111 11 255556666666544445554444443321 122
Q ss_pred ccccCCCCcceEEecCCCCHHHHHHHHHhhcC
Q 030960 74 PALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS 105 (168)
Q Consensus 74 ~al~r~grf~~~i~~~~P~~~~R~~il~~~l~ 105 (168)
..+. ||+.. +++++.+.++-.++++..+.
T Consensus 177 ~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~ 205 (234)
T PF01637_consen 177 SPLF--GRFSH-IELKPLSKEEAREFLKELFK 205 (234)
T ss_dssp STTT--T---E-EEE----HHHHHHHHHHHHH
T ss_pred Cccc--cccce-EEEeeCCHHHHHHHHHHHHH
Confidence 2333 38888 99999999999999987643
No 178
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.028 Score=49.84 Aligned_cols=116 Identities=16% Similarity=0.265 Sum_probs=79.1
Q ss_pred HHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC--C-------CCCCeEEEEecCCCCC------
Q 030960 7 RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--D-------QTVNVKVIMATNRADT------ 71 (168)
Q Consensus 7 ~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~-------~~~~v~vi~ttn~~~~------ 71 (168)
+..++...|||+|||+|.- ++ .+++.||.-+|.= . .-++.++|+|||--..
T Consensus 587 EaVRr~PySViLlDEIEKA-----------Hp---dV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~ 652 (786)
T COG0542 587 EAVRRKPYSVILLDEIEKA-----------HP---DVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDA 652 (786)
T ss_pred HhhhcCCCeEEEechhhhc-----------CH---HHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhc
Confidence 4556677899999999953 22 7888888888742 1 1235899999986422
Q ss_pred ----------------------CCccccCCCCcceEEecCCCCHHHHHHHHHhhcCC---------------CCCHHHHH
Q 030960 72 ----------------------LDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD---------------EVDLEDYV 114 (168)
Q Consensus 72 ----------------------ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~~---------------~~~~~~la 114 (168)
..|+++. |+|.+|.|.+.+.+.-.+|+...+.. +.-.+.++
T Consensus 653 ~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~ 730 (786)
T COG0542 653 DGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLA 730 (786)
T ss_pred cccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHH
Confidence 2344555 99999999999999999999855541 11233455
Q ss_pred hCC--CCCCHHHHHHHHHHHHHHHHH
Q 030960 115 SRP--DKISAAEIAAICQEAGMHAVR 138 (168)
Q Consensus 115 ~~t--~g~s~~di~~l~~~a~~~a~~ 138 (168)
+.. +.|-.+-|.+++++-....+.
T Consensus 731 ~~gyd~~~GARpL~R~Iq~~i~~~La 756 (786)
T COG0542 731 EKGYDPEYGARPLRRAIQQEIEDPLA 756 (786)
T ss_pred HhccCCCcCchHHHHHHHHHHHHHHH
Confidence 543 457778888777766544443
No 179
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=96.23 E-value=0.14 Score=43.61 Aligned_cols=37 Identities=16% Similarity=0.026 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 118 DKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 118 ~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
-++|.+-...+++-|...|--++...++.+|+.+|+.
T Consensus 461 ~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 461 LGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred cCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 3689999999999998888888899999999999985
No 180
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.23 E-value=0.045 Score=46.20 Aligned_cols=125 Identities=17% Similarity=0.160 Sum_probs=80.4
Q ss_pred eEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC-C-------CCCCCeEEEEecCCCCCCCc------cccCCC
Q 030960 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-F-------DQTVNVKVIMATNRADTLDP------ALLRPG 80 (168)
Q Consensus 15 ~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~-------~~~~~v~vi~ttn~~~~ld~------al~r~g 80 (168)
.++|+||+...- ..+.+.|+..|+. . .+-+..+++++|| .+|. ++..
T Consensus 109 ~lLfLDEI~ras--------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN---~LPE~g~~leAL~D-- 169 (498)
T PRK13531 109 EIVFLDEIWKAG--------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASN---ELPEADSSLEALYD-- 169 (498)
T ss_pred cEEeecccccCC--------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC---CCcccCCchHHhHh--
Confidence 489999996331 1556667777732 1 1112245556666 3554 8888
Q ss_pred CcceEEecCCCC-HHHHHHHHHhhcC-------C--CCC-----------------------HHHHHh---CC---CCCC
Q 030960 81 RLDRKIEFPLPD-RRQKRLVFQMNLS-------D--EVD-----------------------LEDYVS---RP---DKIS 121 (168)
Q Consensus 81 rf~~~i~~~~P~-~~~R~~il~~~l~-------~--~~~-----------------------~~~la~---~t---~g~s 121 (168)
||-..+.+|+|+ .++-.+|+..... . -+. +-.+.. .+ ...|
T Consensus 170 RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~S 249 (498)
T PRK13531 170 RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVS 249 (498)
T ss_pred hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcC
Confidence 998899999997 4665777753211 0 011 112332 12 2378
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcCC
Q 030960 122 AAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 159 (168)
Q Consensus 122 ~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~ 159 (168)
++--..+++-+...|+-.++..++.+|+. .+....+.
T Consensus 250 pR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 250 DRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred cHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 88888999988899999999999999999 66555443
No 181
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.17 E-value=0.1 Score=40.40 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=85.0
Q ss_pred HHHHHHHcC-CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCC---
Q 030960 5 VFRLAKENA-PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG--- 80 (168)
Q Consensus 5 iF~~a~~~~-p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g--- 80 (168)
+.+..++.+ |.++++||++.+.... - ..+.-|.+.-.+..+.-++++||-.. |.+.++.|.
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~--------l---e~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e 186 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSA--------L---EALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRE 186 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhH--------H---HHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHh
Confidence 334444444 7999999999885221 1 22222322222222222466666422 333333222
Q ss_pred ---CcceEEecCCCCHHHHHHHHHhhcC---------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 030960 81 ---RLDRKIEFPLPDRRQKRLVFQMNLS---------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKD 148 (168)
Q Consensus 81 ---rf~~~i~~~~P~~~~R~~il~~~l~---------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d 148 (168)
|++..|++++.+.++-..++++.+. .+..+..+...+.| .|+-|.++|..|...|...+++.|+...
T Consensus 187 ~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~ 265 (269)
T COG3267 187 LEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAE 265 (269)
T ss_pred hhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhh
Confidence 7888899999999988888887666 23456678888888 8999999999999999999988888766
Q ss_pred HH
Q 030960 149 FE 150 (168)
Q Consensus 149 ~~ 150 (168)
..
T Consensus 266 ~~ 267 (269)
T COG3267 266 IK 267 (269)
T ss_pred cc
Confidence 54
No 182
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.14 E-value=0.051 Score=49.17 Aligned_cols=80 Identities=23% Similarity=0.365 Sum_probs=55.0
Q ss_pred HHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC--C-------CCCCeEEEEecCCCC----------
Q 030960 10 KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--D-------QTVNVKVIMATNRAD---------- 70 (168)
Q Consensus 10 ~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~-------~~~~v~vi~ttn~~~---------- 70 (168)
+....+||+|||+|.+- . .+.+.|+..++.- . ...+.++|+|||...
T Consensus 667 ~~~p~~vLllDEieka~-----------~---~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~ 732 (857)
T PRK10865 667 RRRPYSVILLDEVEKAH-----------P---DVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGEL 732 (857)
T ss_pred HhCCCCeEEEeehhhCC-----------H---HHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhcccc
Confidence 33344999999998652 1 3445555555421 1 123567899999731
Q ss_pred ---------------CCCccccCCCCcceEEecCCCCHHHHHHHHHhhcC
Q 030960 71 ---------------TLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS 105 (168)
Q Consensus 71 ---------------~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~ 105 (168)
.+.|+++. |+|..+.|.+++.+...+|++.++.
T Consensus 733 ~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 733 DYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred chHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 24467777 9999999999999999999886554
No 183
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.01 E-value=0.025 Score=44.90 Aligned_cols=87 Identities=18% Similarity=0.190 Sum_probs=55.6
Q ss_pred eEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCHH
Q 030960 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 94 (168)
Q Consensus 15 ~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~~ 94 (168)
-||+|||+|++.. ..-+.|..-|+. ....+.+|..||+++.|+.-+.+ |..+--.=++++..
T Consensus 131 KiiIlDEcdsmts--------------daq~aLrr~mE~--~s~~trFiLIcnylsrii~pi~S--RC~KfrFk~L~d~~ 192 (346)
T KOG0989|consen 131 KIIILDECDSMTS--------------DAQAALRRTMED--FSRTTRFILICNYLSRIIRPLVS--RCQKFRFKKLKDED 192 (346)
T ss_pred eEEEEechhhhhH--------------HHHHHHHHHHhc--cccceEEEEEcCChhhCChHHHh--hHHHhcCCCcchHH
Confidence 7999999999852 223445566664 34467888899999999999999 87654433444444
Q ss_pred HHHHHHHhhcCCCC-----CHHHHHhCCCC
Q 030960 95 QKRLVFQMNLSDEV-----DLEDYVSRPDK 119 (168)
Q Consensus 95 ~R~~il~~~l~~~~-----~~~~la~~t~g 119 (168)
.-..+-..+-.+.+ .++.+++.++|
T Consensus 193 iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 193 IVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 43333333433333 34556776554
No 184
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.01 E-value=0.048 Score=42.07 Aligned_cols=76 Identities=13% Similarity=0.137 Sum_probs=59.8
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCC
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P 91 (168)
...-|++|+++|.+-. ...+.+|..++ +...++++|..|+++..+.|.+++ |+ ..+.++.|
T Consensus 88 g~~KViII~~ae~mt~--------------~AANALLKtLE--EPP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p 148 (263)
T PRK06581 88 SGYKVAIIYSAELMNL--------------NAANSCLKILE--DAPKNSYIFLITSRAASIISTIRS--RC-FKINVRSS 148 (263)
T ss_pred CCcEEEEEechHHhCH--------------HHHHHHHHhhc--CCCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCC
Confidence 3467999999998742 45678888888 456678888889999999999998 76 46778999
Q ss_pred CHHHHHHHHHhhcCC
Q 030960 92 DRRQKRLVFQMNLSD 106 (168)
Q Consensus 92 ~~~~R~~il~~~l~~ 106 (168)
+...-.+.+...+.+
T Consensus 149 ~~~~~~e~~~~~~~p 163 (263)
T PRK06581 149 ILHAYNELYSQFIQP 163 (263)
T ss_pred CHHHHHHHHHHhccc
Confidence 888777777765553
No 185
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.94 E-value=0.015 Score=41.88 Aligned_cols=52 Identities=25% Similarity=0.403 Sum_probs=40.9
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCc
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRL 82 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf 82 (168)
..-|++|||+|.+- ....+.||..|+ +...++.+|.+|++++.|.+.+++ |.
T Consensus 102 ~~KviiI~~ad~l~--------------~~a~NaLLK~LE--epp~~~~fiL~t~~~~~il~TI~S--Rc 153 (162)
T PF13177_consen 102 KYKVIIIDEADKLT--------------EEAQNALLKTLE--EPPENTYFILITNNPSKILPTIRS--RC 153 (162)
T ss_dssp SSEEEEEETGGGS---------------HHHHHHHHHHHH--STTTTEEEEEEES-GGGS-HHHHT--TS
T ss_pred CceEEEeehHhhhh--------------HHHHHHHHHHhc--CCCCCEEEEEEECChHHChHHHHh--hc
Confidence 46799999999874 256678899998 455689999999999999999999 75
No 186
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.014 Score=50.95 Aligned_cols=87 Identities=18% Similarity=0.332 Sum_probs=61.0
Q ss_pred CCCccccCCCCcceEEec--CCC-CHHHHHHHHHhhcC--------CCCCHH---H---HHhCCCC------CCHHHHHH
Q 030960 71 TLDPALLRPGRLDRKIEF--PLP-DRRQKRLVFQMNLS--------DEVDLE---D---YVSRPDK------ISAAEIAA 127 (168)
Q Consensus 71 ~ld~al~r~grf~~~i~~--~~P-~~~~R~~il~~~l~--------~~~~~~---~---la~~t~g------~s~~di~~ 127 (168)
..++.++. -|+...++ +.| +.+.|.++|+.+.. +.++.+ + .|.+..| .+++||.+
T Consensus 293 ~~~~~r~~--g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~ 370 (647)
T COG1067 293 EPDRSRIE--GFGYEAEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGN 370 (647)
T ss_pred ccCHHHHh--hcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHH
Confidence 34444444 46666666 566 77899999885544 122222 1 2222222 68999999
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHhhcCC
Q 030960 128 ICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 159 (168)
Q Consensus 128 l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~ 159 (168)
+++.|...|...+...|+.+|+++|++...+.
T Consensus 371 lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~~~~ 402 (647)
T COG1067 371 LVREAGDIAVSEGRKLITAEDVEEALQKRELR 402 (647)
T ss_pred HHHHhhHHHhcCCcccCcHHHHHHHHHhhhhH
Confidence 99999999999999999999999999986553
No 187
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.65 E-value=0.042 Score=43.33 Aligned_cols=70 Identities=23% Similarity=0.416 Sum_probs=52.5
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
..-||+|||+|.+.. ...+.++..++ ....+..+|.+||+++.+-+.+++ |. ..+.|++|+
T Consensus 109 ~~kviiidead~mt~--------------~A~nallk~lE--ep~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~ 169 (325)
T COG0470 109 GYKVVIIDEADKLTE--------------DAANALLKTLE--EPPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPS 169 (325)
T ss_pred CceEEEeCcHHHHhH--------------HHHHHHHHHhc--cCCCCeEEEEEcCChhhccchhhh--cc-eeeecCCch
Confidence 368999999998853 34556777776 456678899999999999999998 65 467777766
Q ss_pred HHHHHHHHH
Q 030960 93 RRQKRLVFQ 101 (168)
Q Consensus 93 ~~~R~~il~ 101 (168)
...+....+
T Consensus 170 ~~~~i~~~e 178 (325)
T COG0470 170 RLEAIAWLE 178 (325)
T ss_pred HHHHHHHhh
Confidence 666665555
No 188
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.62 E-value=0.072 Score=44.62 Aligned_cols=133 Identities=18% Similarity=0.164 Sum_probs=85.6
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccC----CCCcceEEecC
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLR----PGRLDRKIEFP 89 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r----~grf~~~i~~~ 89 (168)
+-++++||.|.|+..+. .++- -+-++.. ..+.++++||.+|..+-=|..|-| -+.-...+.|+
T Consensus 257 ~~llVlDEmD~L~tr~~-----------~vLy-~lFewp~-lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~ 323 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITRSQ-----------TVLY-TLFEWPK-LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFP 323 (529)
T ss_pred eEEEEechhhHHhhccc-----------ceee-eehhccc-CCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeec
Confidence 88999999999983221 1111 2223333 244588999999998876665542 23345688999
Q ss_pred CCCHHHHHHHHHhhcCC-------CCCHHHHHhCCCCCCHHHHHH---HHHHHHHHHHHhC----------------CCc
Q 030960 90 LPDRRQKRLVFQMNLSD-------EVDLEDYVSRPDKISAAEIAA---ICQEAGMHAVRKN----------------RYV 143 (168)
Q Consensus 90 ~P~~~~R~~il~~~l~~-------~~~~~~la~~t~g~s~~di~~---l~~~a~~~a~~~~----------------~~~ 143 (168)
+-+.++..+|++.-+.. +..+.-.|....|.|| |+.. +|+.|...+-.+. +..
T Consensus 324 PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~ 402 (529)
T KOG2227|consen 324 PYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKK 402 (529)
T ss_pred CCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccc
Confidence 99999999999976652 1234456777778776 4544 5565554443332 134
Q ss_pred cCHHHHHHHHHhhcCCC
Q 030960 144 ILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 144 i~~~d~~~al~~~~p~~ 160 (168)
|.-+++..++..+..++
T Consensus 403 v~~~~va~viSk~~~s~ 419 (529)
T KOG2227|consen 403 VGVEHVAAVISKVDGSP 419 (529)
T ss_pred cchHHHHHHhhhhccCh
Confidence 55778888887766544
No 189
>PF05729 NACHT: NACHT domain
Probab=95.60 E-value=0.06 Score=37.84 Aligned_cols=87 Identities=18% Similarity=0.244 Sum_probs=48.1
Q ss_pred HHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecC--CCCCCCccccCCCCcceE
Q 030960 8 LAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATN--RADTLDPALLRPGRLDRK 85 (168)
Q Consensus 8 ~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn--~~~~ld~al~r~grf~~~ 85 (168)
.+....+.+|+||.+|.+...... .........+...+.. ...+++-++.|++ ....+...+.. ...
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~------~~~~~~~~~l~~l~~~-~~~~~~~liit~r~~~~~~~~~~~~~----~~~ 144 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQS------QERQRLLDLLSQLLPQ-ALPPGVKLIITSRPRAFPDLRRRLKQ----AQI 144 (166)
T ss_pred HHHcCCceEEEEechHhcccchhh------hHHHHHHHHHHHHhhh-ccCCCCeEEEEEcCChHHHHHHhcCC----CcE
Confidence 345667899999999999754321 0111222222223332 1122333333333 22223333332 167
Q ss_pred EecCCCCHHHHHHHHHhhcC
Q 030960 86 IEFPLPDRRQKRLVFQMNLS 105 (168)
Q Consensus 86 i~~~~P~~~~R~~il~~~l~ 105 (168)
+.+.+.+.+++.++++.++.
T Consensus 145 ~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 145 LELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred EEECCCCHHHHHHHHHHHhh
Confidence 89999999999999998875
No 190
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=95.56 E-value=0.14 Score=40.70 Aligned_cols=125 Identities=22% Similarity=0.302 Sum_probs=76.6
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCC-------------CCCCCccccCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR-------------ADTLDPALLRP 79 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~-------------~~~ld~al~r~ 79 (168)
-|.|+||||++-|- ...++.+-..++ ..-.++ ||.+||+ |..+|+.++.
T Consensus 296 vPGVLFIDEVhMLD--------------iEcFTyL~kalE--S~iaPi-vifAsNrG~~~irGt~d~~sPhGip~dllD- 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD--------------IECFTYLHKALE--SPIAPI-VIFASNRGMCTIRGTEDILSPHGIPPDLLD- 357 (456)
T ss_pred cCcceEeeehhhhh--------------hHHHHHHHHHhc--CCCCce-EEEecCCcceeecCCcCCCCCCCCCHHHhh-
Confidence 49999999998662 145555655564 222334 5555553 4556666665
Q ss_pred CCcceEEecCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 80 GRLDRKIEFPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 80 grf~~~i~~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
|+-..=..++++ ++-.+|++.--. ++-.++.+++....-|-+--..++.-|...|-..++..|+.+|++++-
T Consensus 358 -Rl~Iirt~~y~~-~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 358 -RLLIIRTLPYDE-EEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVT 435 (456)
T ss_pred -heeEEeeccCCH-HHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHH
Confidence 543333444544 444555543222 233455677766666777777777777777777788889999998887
Q ss_pred Hhhc
Q 030960 154 RTNV 157 (168)
Q Consensus 154 ~~~~ 157 (168)
+-+.
T Consensus 436 ~Lf~ 439 (456)
T KOG1942|consen 436 ELFL 439 (456)
T ss_pred HHHH
Confidence 6554
No 191
>PHA02244 ATPase-like protein
Probab=95.53 E-value=0.054 Score=44.26 Aligned_cols=73 Identities=27% Similarity=0.379 Sum_probs=46.6
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHH-----hccCC-CCCCCeEEEEecCCC-----------CCCCcc
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLN-----QMDGF-DQTVNVKVIMATNRA-----------DTLDPA 75 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~-----~l~~~-~~~~~v~vi~ttn~~-----------~~ld~a 75 (168)
.+.+++|||++.+-+. ....++.++. ..++. ....++.+|+|+|.+ ..+++|
T Consensus 180 ~GgvLiLDEId~a~p~-----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~A 248 (383)
T PHA02244 180 KGGLFFIDEIDASIPE-----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGA 248 (383)
T ss_pred cCCEEEEeCcCcCCHH-----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHH
Confidence 4689999999976321 1122333322 11111 234578999999973 688999
Q ss_pred ccCCCCcceEEecCCCCHHHHHHHH
Q 030960 76 LLRPGRLDRKIEFPLPDRRQKRLVF 100 (168)
Q Consensus 76 l~r~grf~~~i~~~~P~~~~R~~il 100 (168)
++. ||- .++++.|+. ....|.
T Consensus 249 llD--RFv-~I~~dyp~~-~E~~i~ 269 (383)
T PHA02244 249 TLD--RFA-PIEFDYDEK-IEHLIS 269 (383)
T ss_pred HHh--hcE-EeeCCCCcH-HHHHHh
Confidence 999 995 699999984 333444
No 192
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.52 E-value=0.11 Score=41.21 Aligned_cols=71 Identities=14% Similarity=0.314 Sum_probs=52.4
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
..-|++||++|.+. ....+.++..++. ..+.+++|.+|+.++.+-+.+++ |. ..++|.+|+
T Consensus 90 ~~KvvII~~~e~m~--------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~ 150 (299)
T PRK07132 90 QKKILIIKNIEKTS--------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPD 150 (299)
T ss_pred CceEEEEecccccC--------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCC
Confidence 45677777776552 2456678888884 45567777777789999999988 64 458999999
Q ss_pred HHHHHHHHHh
Q 030960 93 RRQKRLVFQM 102 (168)
Q Consensus 93 ~~~R~~il~~ 102 (168)
.++-.+.+..
T Consensus 151 ~~~l~~~l~~ 160 (299)
T PRK07132 151 QQKILAKLLS 160 (299)
T ss_pred HHHHHHHHHH
Confidence 8888877764
No 193
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.48 E-value=0.013 Score=40.70 Aligned_cols=54 Identities=30% Similarity=0.514 Sum_probs=35.4
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC-----------CCCC------CeEEEEecCCCC----C
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-----------DQTV------NVKVIMATNRAD----T 71 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~------~v~vi~ttn~~~----~ 71 (168)
.+++++|||++..- . .++..++..+++- .... ++.+|+|+|... .
T Consensus 65 ~~~il~lDEin~a~-----------~---~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~ 130 (139)
T PF07728_consen 65 KGGILVLDEINRAP-----------P---EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKE 130 (139)
T ss_dssp EEEEEEESSCGG-------------H---HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTT
T ss_pred ceeEEEECCcccCC-----------H---HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCc
Confidence 47999999999642 1 3444444444421 0111 389999999999 9
Q ss_pred CCccccCCCCc
Q 030960 72 LDPALLRPGRL 82 (168)
Q Consensus 72 ld~al~r~grf 82 (168)
+++++++ ||
T Consensus 131 l~~al~~--Rf 139 (139)
T PF07728_consen 131 LSPALLD--RF 139 (139)
T ss_dssp TCHHHHT--T-
T ss_pred CCHHHHh--hC
Confidence 9999999 87
No 194
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.36 E-value=0.078 Score=41.97 Aligned_cols=78 Identities=21% Similarity=0.331 Sum_probs=48.2
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccC---------CC--
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLR---------PG-- 80 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r---------~g-- 80 (168)
..|-||+|||+|.+-+. .+..++..+..+-..+++++|.+.+ ++.+-.++.. .|
T Consensus 171 ~~~iViiIDdLDR~~~~--------------~i~~~l~~ik~~~~~~~i~~Il~~D-~~~l~~ai~~~~~~~~~~~~~~~ 235 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSPE--------------EIVELLEAIKLLLDFPNIIFILAFD-PEILEKAIEKNYGEGFDEIDGRE 235 (325)
T ss_pred CceEEEEEcchhcCCcH--------------HHHHHHHHHHHhcCCCCeEEEEEec-HHHHHHHHHhhcCcccccccHHH
Confidence 45899999999987321 1223333333333446777776654 2222222221 11
Q ss_pred ----CcceEEecCCCCHHHHHHHHHhhc
Q 030960 81 ----RLDRKIEFPLPDRRQKRLVFQMNL 104 (168)
Q Consensus 81 ----rf~~~i~~~~P~~~~R~~il~~~l 104 (168)
-|+..+.+|+|+..+...++...+
T Consensus 236 yLeKiiq~~~~lP~~~~~~~~~~~~~~~ 263 (325)
T PF07693_consen 236 YLEKIIQVPFSLPPPSPSDLERYLNELL 263 (325)
T ss_pred HHHhhcCeEEEeCCCCHHHHHHHHHHHH
Confidence 388899999999999888887554
No 195
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=95.28 E-value=0.19 Score=43.52 Aligned_cols=128 Identities=13% Similarity=0.122 Sum_probs=83.7
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC---------C--CCCCCeEEEEecCCC---CCCCccccCC
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG---------F--DQTVNVKVIMATNRA---DTLDPALLRP 79 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~--~~~~~v~vi~ttn~~---~~ld~al~r~ 79 (168)
..|||+||+..+- .+++..|+.-|+. . ....+.++|++-|.. ..|+++++.
T Consensus 94 ~GvL~lDe~n~~~--------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD- 158 (584)
T PRK13406 94 GGVLVLAMAERLE--------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD- 158 (584)
T ss_pred CCEEEecCcccCC--------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh-
Confidence 3799999998762 1667777777752 1 112357778863322 358889999
Q ss_pred CCcceEEecCCCCHHHHH-------HHH--HhhcCC----CCCHHHHHhC--CCCC-CHHHHHHHHHHHHHHHHHhCCCc
Q 030960 80 GRLDRKIEFPLPDRRQKR-------LVF--QMNLSD----EVDLEDYVSR--PDKI-SAAEIAAICQEAGMHAVRKNRYV 143 (168)
Q Consensus 80 grf~~~i~~~~P~~~~R~-------~il--~~~l~~----~~~~~~la~~--t~g~-s~~di~~l~~~a~~~a~~~~~~~ 143 (168)
||+..+.++.|+..+-. +|. +..+.. +..+..++.. .-|. |.+--..+++-|...|.-++...
T Consensus 159 -Rf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~ 237 (584)
T PRK13406 159 -RLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTA 237 (584)
T ss_pred -heEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCC
Confidence 99999999988765421 122 122221 1112222222 1355 77777788888888888889999
Q ss_pred cCHHHHHHHHHhhc
Q 030960 144 ILPKDFEKGYRTNV 157 (168)
Q Consensus 144 i~~~d~~~al~~~~ 157 (168)
|+.+|+.+|+.-+.
T Consensus 238 V~~~dv~~Aa~lvL 251 (584)
T PRK13406 238 VEEEDLALAARLVL 251 (584)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999997543
No 196
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=95.28 E-value=0.16 Score=45.93 Aligned_cols=38 Identities=18% Similarity=0.111 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 120 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 120 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
.|.+.|+++++-|-..|-.+-+..++.+|...|++-+.
T Consensus 768 iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~ 805 (915)
T PTZ00111 768 VSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVK 805 (915)
T ss_pred ccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHH
Confidence 68999999999998888888888999999999987654
No 197
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.22 E-value=0.26 Score=38.95 Aligned_cols=59 Identities=20% Similarity=0.377 Sum_probs=45.1
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCC
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P 91 (168)
.-|++||++|.+-. ...|.+|..++ +...++++|..|++++.+.|.+++ |+. .+.|+++
T Consensus 96 ~kv~ii~~ad~mt~--------------~AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRMTL--------------DAISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred ceEEEEechhhcCH--------------HHHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 46889999998742 45677888888 466688999999999999999998 764 3445544
No 198
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=95.00 E-value=0.03 Score=41.40 Aligned_cols=68 Identities=13% Similarity=0.156 Sum_probs=41.2
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P 91 (168)
..++|+|||+..+++.+....... ...+ ..+.. ....+.-+|.+|.++..||+.++. +.+..+.+..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~----~~~~----~~l~~-hRh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKV----PEII----EFLAQ-HRHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T--------HHH----HGGGG-CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred CCcEEEEECChhhcCCCccccccc----hHHH----HHHHH-hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 579999999999998874421111 1223 33322 234467899999999999999987 88888877654
No 199
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.99 E-value=0.039 Score=40.15 Aligned_cols=56 Identities=25% Similarity=0.343 Sum_probs=37.2
Q ss_pred eEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC---------CCCCCeEEEEecCCCCCCC
Q 030960 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF---------DQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 15 ~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~v~vi~ttn~~~~ld 73 (168)
.||+|||+|...+. .+.+.+-....+.+.||..+++- -..+++++|+|+|.-....
T Consensus 70 gVVllDEidKa~~~---~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~ 134 (171)
T PF07724_consen 70 GVVLLDEIDKAHPS---NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEI 134 (171)
T ss_dssp TEEEEETGGGCSHT---TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHH
T ss_pred hhhhhHHHhhcccc---ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchh
Confidence 49999999999875 22233333447777788877532 1234699999999765433
No 200
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.98 E-value=0.34 Score=37.44 Aligned_cols=89 Identities=18% Similarity=0.271 Sum_probs=59.4
Q ss_pred HHHHHHHH-cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC-C-CCCCCeEEEEecCCCCCCCcccc-C-
Q 030960 4 DVFRLAKE-NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-F-DQTVNVKVIMATNRADTLDPALL-R- 78 (168)
Q Consensus 4 ~iF~~a~~-~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~-~~~~~v~vi~ttn~~~~ld~al~-r- 78 (168)
.+++..+. .++.|||.|++-. +.+. .-...+...++| + ....+|++-||+|+-+.|+.... +
T Consensus 129 ~l~~~Lr~~~~kFIlFcDDLSF--------e~gd-----~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~ 195 (287)
T COG2607 129 DLVELLRARPEKFILFCDDLSF--------EEGD-----DAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNE 195 (287)
T ss_pred HHHHHHhcCCceEEEEecCCCC--------CCCc-----hHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCC
Confidence 45555553 3488999998642 1111 112233344443 2 34558999999999988884332 1
Q ss_pred ------------------CCCcceEEecCCCCHHHHHHHHHhhcC
Q 030960 79 ------------------PGRLDRKIEFPLPDRRQKRLVFQMNLS 105 (168)
Q Consensus 79 ------------------~grf~~~i~~~~P~~~~R~~il~~~l~ 105 (168)
..||+..+.|.+|+.++-..|+..+..
T Consensus 196 ~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~ 240 (287)
T COG2607 196 GSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAK 240 (287)
T ss_pred CcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHH
Confidence 128999999999999999999998774
No 201
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=94.79 E-value=0.24 Score=38.58 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=46.7
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCC
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P 91 (168)
.-|++|+++|.+- ....+.||..++ +...++++|.+|++++.+.|.+++ |... +.++.+
T Consensus 89 ~KV~II~~ae~m~--------------~~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RCq~-~~~~~~ 147 (261)
T PRK05818 89 KKIYIIYGIEKLN--------------KQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RCVQ-YVVLSK 147 (261)
T ss_pred CEEEEeccHhhhC--------------HHHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--heee-eecCCh
Confidence 5788888888773 256678999998 466789999999999999999999 8644 555555
No 202
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.59 E-value=0.061 Score=43.22 Aligned_cols=82 Identities=18% Similarity=0.316 Sum_probs=58.0
Q ss_pred HHHHHHHHHH----cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcccc
Q 030960 2 VRDVFRLAKE----NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 2 l~~iF~~a~~----~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (168)
||++-+.+.. ...-|++||++|.+-. ...+.++..++... .++.+|.+|++++.+.+.++
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~--------------~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNL--------------QAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCH--------------HHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHH
Confidence 3555555543 3356889999998731 34455677776543 34667779999999999998
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHh
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQM 102 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~ 102 (168)
+ |+ ..+.|++|+.++-.+.+..
T Consensus 162 S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 7 65 5678899999988877753
No 203
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=94.48 E-value=0.65 Score=38.48 Aligned_cols=80 Identities=24% Similarity=0.452 Sum_probs=55.3
Q ss_pred HHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhcc---------CC--CCCCCeEEEEecCCC-CCCCccc
Q 030960 9 AKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMD---------GF--DQTVNVKVIMATNRA-DTLDPAL 76 (168)
Q Consensus 9 a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~---------~~--~~~~~v~vi~ttn~~-~~ld~al 76 (168)
|+++ ..|+++||+-.|- .++++.||+.+. |+ ...-++++|||+|-- -.|=|-|
T Consensus 141 a~An-RGIlYvDEvnlL~--------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqL 205 (423)
T COG1239 141 ARAN-RGILYVDEVNLLD--------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQL 205 (423)
T ss_pred hhcc-CCEEEEecccccc--------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhh
Confidence 4455 4899999998773 145555555543 22 233468899998842 2566677
Q ss_pred cCCCCcceEEecCCC-CHHHHHHHHHhhcC
Q 030960 77 LRPGRLDRKIEFPLP-DRRQKRLVFQMNLS 105 (168)
Q Consensus 77 ~r~grf~~~i~~~~P-~~~~R~~il~~~l~ 105 (168)
+. ||+..+.+..| +.++|.+|.+.-..
T Consensus 206 lD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 206 LD--RFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred Hh--hhcceeeccCCCCHHHHHHHHHHHHH
Confidence 77 99999999655 78999999984443
No 204
>PRK14700 recombination factor protein RarA; Provisional
Probab=94.46 E-value=0.24 Score=39.27 Aligned_cols=99 Identities=11% Similarity=0.132 Sum_probs=63.7
Q ss_pred CCCeEEEE-ecCCCC-CCCccccCCCCcceEEecCCCCHHHHHHHHHhhcCC-------CCCH-HHHHhCCCCCCHHHHH
Q 030960 57 TVNVKVIM-ATNRAD-TLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-------EVDL-EDYVSRPDKISAAEIA 126 (168)
Q Consensus 57 ~~~v~vi~-ttn~~~-~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~~-------~~~~-~~la~~t~g~s~~di~ 126 (168)
++.+.+|| ||.+|. .+.+||++ |. +++.+.+++.++-..+++..+.. ++.+ ++.......++.+|..
T Consensus 6 ~G~i~LIGATTENP~f~vn~ALlS--R~-~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR 82 (300)
T PRK14700 6 SGKIILIGATTENPTYYLNDALVS--RL-FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCR 82 (300)
T ss_pred CCcEEEEeecCCCccceecHhhhh--hh-heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHH
Confidence 45677887 444554 89999999 87 78999999999999999876642 1222 2222333345566777
Q ss_pred HHHHHHHHHHHH----hCCCccCHHHHHHHHHhhcCC
Q 030960 127 AICQEAGMHAVR----KNRYVILPKDFEKGYRTNVKK 159 (168)
Q Consensus 127 ~l~~~a~~~a~~----~~~~~i~~~d~~~al~~~~p~ 159 (168)
..++.-- .++. .....||.+++.+.+.+....
T Consensus 83 ~aLN~LE-~a~~~~~~~~~~~it~~~~~~~~~~~~~~ 118 (300)
T PRK14700 83 KILNLLE-RMFLISTRGDEIYLNKELFDQAVGETSRD 118 (300)
T ss_pred HHHHHHH-HHHhhccccCCCccCHHHHHHHHhHHHhc
Confidence 7666332 2221 112248999999988765443
No 205
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=94.13 E-value=0.081 Score=44.24 Aligned_cols=73 Identities=16% Similarity=0.347 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHcC----Ce-EEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcc
Q 030960 1 MVRDVFRLAKENA----PA-IIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPA 75 (168)
Q Consensus 1 ~l~~iF~~a~~~~----p~-ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~a 75 (168)
||.++|+..-+-. |- |+||||++.||.+. .+....-+.+.. ++-.+++|-|+..|.+|.+||..
T Consensus 238 LLsELfe~LPEvGD~dkPklVfFfDEAHLLF~da-------~kall~~ieqvv----rLIRSKGVGv~fvTQ~P~DiP~~ 306 (502)
T PF05872_consen 238 LLSELFEQLPEVGDLDKPKLVFFFDEAHLLFNDA-------PKALLDKIEQVV----RLIRSKGVGVYFVTQNPTDIPDD 306 (502)
T ss_pred HHHHHHHhCccCCCCCCceEEEEEechhhhhcCC-------CHHHHHHHHHHH----HHhhccCceEEEEeCCCCCCCHH
Confidence 4667777765432 54 46699999999432 222222233333 33357789999999999999999
Q ss_pred ccCCCCcceEE
Q 030960 76 LLRPGRLDRKI 86 (168)
Q Consensus 76 l~r~grf~~~i 86 (168)
++. -+...|
T Consensus 307 VL~--QLGnrI 315 (502)
T PF05872_consen 307 VLG--QLGNRI 315 (502)
T ss_pred HHH--hhhhHH
Confidence 986 555555
No 206
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=94.10 E-value=0.39 Score=35.93 Aligned_cols=83 Identities=14% Similarity=0.165 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcC-CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCC
Q 030960 2 VRDVFRLAKENA-PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (168)
Q Consensus 2 l~~iF~~a~~~~-p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (168)
+|++.+.+...+ ...++|+++|.+. ....|.+|..++ ....++++|..|+.+..+.|.+++
T Consensus 42 iReii~~~~~~~~~~k~iI~~a~~l~--------------~~A~NaLLK~LE--EPp~~~~fiL~t~~~~~llpTI~S-- 103 (206)
T PRK08485 42 AKEVIAEAYIAESEEKIIVIAAPSYG--------------IEAQNALLKILE--EPPKNICFIIVAKSKNLLLPTIRS-- 103 (206)
T ss_pred HHHHHHHHhhCCCCcEEEEEchHhhC--------------HHHHHHHHHHhc--CCCCCeEEEEEeCChHhCchHHHh--
Confidence 344555443221 2334577787663 255678898898 466678888888899999999998
Q ss_pred Ccce------------EEecCCCCHHHHHHHHHh
Q 030960 81 RLDR------------KIEFPLPDRRQKRLVFQM 102 (168)
Q Consensus 81 rf~~------------~i~~~~P~~~~R~~il~~ 102 (168)
|+.. .+.+...+.++-.+.++.
T Consensus 104 Rc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 104 RLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred hheeccccccccccccccccCCCCHHHHHHHHHH
Confidence 7653 567788888888888876
No 207
>PF14516 AAA_35: AAA-like domain
Probab=93.93 E-value=0.64 Score=37.40 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=54.0
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC---CCCC-eEEEEecCCCCCCCccccCCCCcceEEe
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD---QTVN-VKVIMATNRADTLDPALLRPGRLDRKIE 87 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---~~~~-v~vi~ttn~~~~ld~al~r~grf~~~i~ 87 (168)
..|-||+|||+|.++... .. ....+..+-.+.+.-. .-.+ +++++.+..+......-.+|=.+...+.
T Consensus 126 ~~~lVL~iDEiD~l~~~~-----~~---~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~ 197 (331)
T PF14516_consen 126 DKPLVLFIDEIDRLFEYP-----QI---ADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIE 197 (331)
T ss_pred CCCEEEEEechhhhccCc-----ch---HHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCccccccee
Confidence 469999999999998432 11 0122221111111111 1112 3344433322222222234434667888
Q ss_pred cCCCCHHHHHHHHHhhcCC--CCCHHHHHhCCCCC
Q 030960 88 FPLPDRRQKRLVFQMNLSD--EVDLEDYVSRPDKI 120 (168)
Q Consensus 88 ~~~P~~~~R~~il~~~l~~--~~~~~~la~~t~g~ 120 (168)
++.-+.++-..+++.+-.. ...++.+-..|.|.
T Consensus 198 L~~Ft~~ev~~L~~~~~~~~~~~~~~~l~~~tgGh 232 (331)
T PF14516_consen 198 LPDFTPEEVQELAQRYGLEFSQEQLEQLMDWTGGH 232 (331)
T ss_pred CCCCCHHHHHHHHHhhhccCCHHHHHHHHHHHCCC
Confidence 8888999999998865432 22367777777773
No 208
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.93 E-value=0.21 Score=43.69 Aligned_cols=95 Identities=13% Similarity=0.252 Sum_probs=62.4
Q ss_pred CeEEEEecCCC--CCCCccccCCCCcc---eEEecC--CC-CHHHHHHHHHh---hcC-----CCCCHHH---HHh---C
Q 030960 59 NVKVIMATNRA--DTLDPALLRPGRLD---RKIEFP--LP-DRRQKRLVFQM---NLS-----DEVDLED---YVS---R 116 (168)
Q Consensus 59 ~v~vi~ttn~~--~~ld~al~r~grf~---~~i~~~--~P-~~~~R~~il~~---~l~-----~~~~~~~---la~---~ 116 (168)
.+.||+++|.. ..+||++.. ||. ..+++. .| +.+.+..+++. ... ..++-+. +.+ +
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 46788888874 677999988 886 566664 22 34555555541 111 1233222 211 1
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 117 PDK------ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 117 t~g------~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
..| +..++|..+++.|...|..++...++.+|..+|+..
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 122 457999999999999999998889999999888754
No 209
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=93.88 E-value=0.13 Score=41.33 Aligned_cols=127 Identities=21% Similarity=0.234 Sum_probs=74.2
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC----CC-------CCCeEEEEecCCCC------------
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF----DQ-------TVNVKVIMATNRAD------------ 70 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~----~~-------~~~v~vi~ttn~~~------------ 70 (168)
..|++|||+|.+-. .....+++.|+.- .+ ..+.-|+|++|-..
T Consensus 122 ~GiccIDe~dk~~~--------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~n 187 (331)
T PF00493_consen 122 GGICCIDEFDKMKE--------------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSEN 187 (331)
T ss_dssp TSEEEECTTTT--C--------------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCC
T ss_pred Cceeeecccccccc--------------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHh
Confidence 58999999998732 1233444555431 11 23477899988666
Q ss_pred -CCCccccCCCCcceEEec-CCCCHHHHHHHHHhhcC----C-------------CC-----------------------
Q 030960 71 -TLDPALLRPGRLDRKIEF-PLPDRRQKRLVFQMNLS----D-------------EV----------------------- 108 (168)
Q Consensus 71 -~ld~al~r~grf~~~i~~-~~P~~~~R~~il~~~l~----~-------------~~----------------------- 108 (168)
.+++.+++ |||..+.+ ..|+.+.=..+.++.+. . ..
T Consensus 188 i~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~e 265 (331)
T PF00493_consen 188 INLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEE 265 (331)
T ss_dssp T-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HH
T ss_pred cccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHH
Confidence 58999999 99999876 67775554444432221 0 00
Q ss_pred CHHHH----------H---hCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 109 DLEDY----------V---SRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 109 ~~~~l----------a---~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
..+.| . ......|.+.|+.+++-|...|--+-+..|+.+|+..|+.-+
T Consensus 266 a~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 266 AKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLF 326 (331)
T ss_dssp CHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHH
Confidence 00011 0 112246788899999999888888888899999999998754
No 210
>PF12846 AAA_10: AAA-like domain
Probab=93.54 E-value=0.066 Score=41.50 Aligned_cols=71 Identities=31% Similarity=0.405 Sum_probs=52.5
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC-----ccccCCCCcceEE
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD-----PALLRPGRLDRKI 86 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld-----~al~r~grf~~~i 86 (168)
..|.++++||+..+.... .....+..++... ...++.++.+|..|.+++ ++++. -+...+
T Consensus 219 ~~~~~i~iDEa~~~~~~~---------~~~~~~~~~~~~~----Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~--n~~~~i 283 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLSNP---------SGAEFLDELLREG----RKYGVGLILATQSPSDLPKSPIEDAILA--NCNTKI 283 (304)
T ss_pred CceEEEEeCCcccccccc---------chhhhhhHHHHHH----HhcCCEEEEeeCCHHHHhccchHHHHHH--hCCcEE
Confidence 569999999999887542 1123344444443 344788999999999999 78887 788888
Q ss_pred ecCCCCHHHHH
Q 030960 87 EFPLPDRRQKR 97 (168)
Q Consensus 87 ~~~~P~~~~R~ 97 (168)
.+..++.+...
T Consensus 284 ~~~~~~~~~~~ 294 (304)
T PF12846_consen 284 IFRLEDSDDAE 294 (304)
T ss_pred EecCChHHHHH
Confidence 88888877766
No 211
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.03 E-value=0.8 Score=40.65 Aligned_cols=104 Identities=15% Similarity=0.126 Sum_probs=61.1
Q ss_pred eEEEEecCCCCCCCccccCCCCcceEEecCCCCHHHHHHHHH-hhcCC--CCCHHHHHhCCCCCCHHHHHHHHHHHHHHH
Q 030960 60 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ-MNLSD--EVDLEDYVSRPDKISAAEIAAICQEAGMHA 136 (168)
Q Consensus 60 v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~~~R~~il~-~~l~~--~~~~~~la~~t~g~s~~di~~l~~~a~~~a 136 (168)
.-||+.+|+. --|||+.=--|-..++|.+|....-.+=|+ .|..+ ..+...|+..|+ ++..||.+.++.-.+.+
T Consensus 439 RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~e-l~~~DIRsCINtLQfLa 515 (877)
T KOG1969|consen 439 RPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCE-LTQNDIRSCINTLQFLA 515 (877)
T ss_pred CCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence 4588888854 456665322489999999998776555444 34433 234444444443 55679999999877766
Q ss_pred HHhCC--CccCHHHHHHHHHhhcCCCCCcccc
Q 030960 137 VRKNR--YVILPKDFEKGYRTNVKKPDTDFEF 166 (168)
Q Consensus 137 ~~~~~--~~i~~~d~~~al~~~~p~~~~~~~~ 166 (168)
.+..+ ..+...++-+.....+.++.+-++|
T Consensus 516 ~~~~r~ds~i~~~~i~a~~~~~k~~~~slf~~ 547 (877)
T KOG1969|consen 516 SNVDRRDSSISVKLICAKNVGAKSNSDSLFSW 547 (877)
T ss_pred HhcccccccchhhhhhhhhhcccccccchHHH
Confidence 65322 2344455544444444444444444
No 212
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.99 E-value=1.5 Score=38.52 Aligned_cols=107 Identities=12% Similarity=0.177 Sum_probs=58.4
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHH-hccCCCCCCCeEEEE-ecCCCC--------C------CCccc
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLN-QMDGFDQTVNVKVIM-ATNRAD--------T------LDPAL 76 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~-~l~~~~~~~~v~vi~-ttn~~~--------~------ld~al 76 (168)
...||+|||+|.++... . +.+..++. ... ....+.+|+ +|..+. . |.+++
T Consensus 195 ~~~IILIDEiPn~~~r~-------~----~~lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eL 260 (637)
T TIGR00602 195 DKKIILVEDLPNQFYRD-------T----RALHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEI 260 (637)
T ss_pred ceeEEEeecchhhchhh-------H----HHHHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhH
Confidence 46899999999876321 1 22333443 221 233443444 442332 0 22566
Q ss_pred cCCCCcceEEecCCCCHHHHHHHHHhhcCC-------C------CCHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Q 030960 77 LRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-------E------VDLEDYVSRPDKISAAEIAAICQEAGMHAVR 138 (168)
Q Consensus 77 ~r~grf~~~i~~~~P~~~~R~~il~~~l~~-------~------~~~~~la~~t~g~s~~di~~l~~~a~~~a~~ 138 (168)
+...|. ..|.|.+.+...-.+.|+..+.. + ..+..|+. .+.+||..+++.-.+.+.+
T Consensus 261 ls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~~~ 330 (637)
T TIGR00602 261 LEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQ----GCSGDIRSAINSLQFSSSK 330 (637)
T ss_pred hcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHH----hCCChHHHHHHHHHHHHhc
Confidence 542233 37899999998866666533331 1 13444555 5667998888865555443
No 213
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=91.61 E-value=5.3 Score=31.10 Aligned_cols=123 Identities=14% Similarity=0.097 Sum_probs=67.5
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC---ccccCCCCcceEEecCC
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD---PALLRPGRLDRKIEFPL 90 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld---~al~r~grf~~~i~~~~ 90 (168)
.-+|+|++++.+... ...+.++..+... .+..++|..++.++.-. ..+..- .-...+.+..
T Consensus 47 ~kliii~~~~~~~~~-------------~~~~~L~~~l~~~--~~~~~~i~~~~~~~~~~~~~k~~~~~-~~~~~i~~~~ 110 (302)
T TIGR01128 47 RRLVELRNPEGKPGA-------------KGLKALEEYLANP--PPDTLLLIEAPKLDKRKKLTKWLKAL-KNAQIVECKT 110 (302)
T ss_pred CeEEEEECCCCCCCH-------------HHHHHHHHHHhcC--CCCEEEEEecCCCCHhHHHHHHHHHh-cCeeEEEecC
Confidence 568888888865311 1244566666643 23444555555332111 111110 1245778889
Q ss_pred CCHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 91 PDRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 91 P~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
|+..+...+++..+.. .-.+..+++.++| |+..+.++.-..+.-.+...||.+|+...+...
T Consensus 111 ~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~----d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~~ 178 (302)
T TIGR01128 111 PKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEG----NLLAIAQELEKLALYAPDGKITLEDVEEAVSDS 178 (302)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCc----HHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhhh
Confidence 9999999888765542 2234455555543 555554444444443333468888888877644
No 214
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.54 E-value=0.3 Score=39.30 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=30.7
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF 54 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 54 (168)
+..||+|||+|.+..+..+.+-..+-..+.+...+|..++|-
T Consensus 162 erGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 162 ERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 469999999999998775554443333456777888888764
No 215
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=91.12 E-value=6.5 Score=31.20 Aligned_cols=126 Identities=16% Similarity=0.120 Sum_probs=68.3
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC------CccccCCCCcceEEe
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL------DPALLRPGRLDRKIE 87 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l------d~al~r~grf~~~i~ 87 (168)
.-+|++++.+.+-... ....+..+...+ .....+.++++..++..+.- -+++. .....+.
T Consensus 77 ~klvii~~~~~l~~~~----------~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~---~~~~~~~ 142 (340)
T PRK05574 77 RKLVELRLPEFLTGAK----------GEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALK---KKAVVVE 142 (340)
T ss_pred CeEEEEECCCCCCchh----------HHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHH---hCceEEE
Confidence 5677788877653211 123344455545 33334345555555543321 11222 2346788
Q ss_pred cCCCCHHHHHHHHHhhcCC---CC---CHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 88 FPLPDRRQKRLVFQMNLSD---EV---DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 88 ~~~P~~~~R~~il~~~l~~---~~---~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
++.|+..+....++..+.. .+ .++.+++.+ +.|+..+.++.-..+.-.+...||.+++.+.+....
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~----~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~ 214 (340)
T PRK05574 143 AQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERV----EGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSA 214 (340)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh----CchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhh
Confidence 8899999988888766642 22 233444443 346666666555555443222388888887776543
No 216
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=90.79 E-value=0.92 Score=37.50 Aligned_cols=121 Identities=19% Similarity=0.245 Sum_probs=58.9
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC-----CC----CCCeEEEEecCCCCCCCccccCCCCcc
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-----DQ----TVNVKVIMATNRADTLDPALLRPGRLD 83 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~~----~~~v~vi~ttn~~~~ld~al~r~grf~ 83 (168)
.+..|||||+|.+-.. ....++..++.- .. ...+-+|++|+..- .....+|+|.
T Consensus 233 ~~gtl~ldei~~l~~~--------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~ 295 (441)
T PRK10365 233 DGGTLFLDEIGDISPM--------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFR 295 (441)
T ss_pred CCCEEEEeccccCCHH--------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCch
Confidence 3688999999998521 122333333321 11 12456777776532 2334566774
Q ss_pred e-------EEecCCCCHHHHHH----HHHhhcCC----------CCCHH---HHHhCCCCCCHHHHHHHHHHHHHHHHHh
Q 030960 84 R-------KIEFPLPDRRQKRL----VFQMNLSD----------EVDLE---DYVSRPDKISAAEIAAICQEAGMHAVRK 139 (168)
Q Consensus 84 ~-------~i~~~~P~~~~R~~----il~~~l~~----------~~~~~---~la~~t~g~s~~di~~l~~~a~~~a~~~ 139 (168)
. .+.+..|...+|.+ ++++++.. .++-+ .|..+.=--..++|.++++.++.. .
T Consensus 296 ~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~---~ 372 (441)
T PRK10365 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL---L 372 (441)
T ss_pred HHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh---C
Confidence 3 34555555555543 33444331 01111 122221111346666666666543 2
Q ss_pred CCCccCHHHHHHHH
Q 030960 140 NRYVILPKDFEKGY 153 (168)
Q Consensus 140 ~~~~i~~~d~~~al 153 (168)
....|+.+++...+
T Consensus 373 ~~~~i~~~~l~~~~ 386 (441)
T PRK10365 373 TGEYISERELPLAI 386 (441)
T ss_pred CCCccchHhCchhh
Confidence 33457777765444
No 217
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=90.50 E-value=0.61 Score=38.24 Aligned_cols=72 Identities=22% Similarity=0.344 Sum_probs=40.7
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecC------------CCCCCCccccCCCC
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATN------------RADTLDPALLRPGR 81 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn------------~~~~ld~al~r~gr 81 (168)
|.|+||||++-|= . ..++.|-..++ ..-..+||.+|| .|.-+|..++. |
T Consensus 279 pGVLFIDEvHmLD-----------i---EcFsfLnralE---s~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHMLD-----------I---ECFSFLNRALE---SELSPIIILATNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGSB-----------H---HHHHHHHHHHT---STT--EEEEEES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhcc-----------H---HHHHHHHHHhc---CCCCcEEEEecCceeeeccCccCcCCCCCCcchHh--h
Confidence 9999999999762 1 33444444443 333445666777 46667767766 5
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS 105 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~ 105 (168)
+ ..|...+.+.++-.+|++.-..
T Consensus 340 l-lII~t~py~~~ei~~Il~iR~~ 362 (398)
T PF06068_consen 340 L-LIIRTKPYSEEEIKQILKIRAK 362 (398)
T ss_dssp E-EEEEE----HHHHHHHHHHHHH
T ss_pred c-EEEECCCCCHHHHHHHHHhhhh
Confidence 4 4566678899999999985443
No 218
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=89.87 E-value=0.81 Score=30.86 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEec
Q 030960 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMAT 66 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~tt 66 (168)
+.+.+..+.....+|+|||+|.+. + ...++.+...++ ...-+++++++.
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~-~------------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLF-S------------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHH-T------------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHhcC-C------------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 445556666666799999999975 1 255666655555 233345555554
No 219
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=89.54 E-value=1.3 Score=36.73 Aligned_cols=120 Identities=19% Similarity=0.311 Sum_probs=61.5
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC-----CCC----CCCeEEEEecCCCCCCCccccCCCCcce
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-----FDQ----TVNVKVIMATNRADTLDPALLRPGRLDR 84 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~----~~~v~vi~ttn~~~~ld~al~r~grf~~ 84 (168)
..+|||||+|.+-. .+...++..++. +.. ...+.+|+||+..- . .+.+.|+|..
T Consensus 238 ~gtl~ld~i~~l~~--------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l--~-~~~~~g~~~~ 300 (457)
T PRK11361 238 EGTLLLDEIGEMPL--------------VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDL--Q-AMVKEGTFRE 300 (457)
T ss_pred CCEEEEechhhCCH--------------HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCH--H-HHHHcCCchH
Confidence 46899999998842 122333443332 111 12478888887532 1 3334455554
Q ss_pred -------EEecCCCCHHHHHH----HHHhhcCC----------CCCH---HHHHhCCCCCCHHHHHHHHHHHHHHHHHhC
Q 030960 85 -------KIEFPLPDRRQKRL----VFQMNLSD----------EVDL---EDYVSRPDKISAAEIAAICQEAGMHAVRKN 140 (168)
Q Consensus 85 -------~i~~~~P~~~~R~~----il~~~l~~----------~~~~---~~la~~t~g~s~~di~~l~~~a~~~a~~~~ 140 (168)
.+.+..|...+|.+ +.+.++.. .++- ..+..+.=--..++|+++++.|+..+ .
T Consensus 301 ~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~---~ 377 (457)
T PRK11361 301 DLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN---S 377 (457)
T ss_pred HHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC---C
Confidence 35566666666653 33333321 1111 12222221124578888887776532 3
Q ss_pred CCccCHHHHHHHH
Q 030960 141 RYVILPKDFEKGY 153 (168)
Q Consensus 141 ~~~i~~~d~~~al 153 (168)
...|+.+|+...+
T Consensus 378 ~~~i~~~~l~~~~ 390 (457)
T PRK11361 378 GPIIFSEDLPPQI 390 (457)
T ss_pred CCcccHHHChHhh
Confidence 3467777776544
No 220
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=89.48 E-value=0.99 Score=34.89 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=53.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcce
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDR 84 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~ 84 (168)
+.+..+. .+++|+||+++... .+..+...+. ....+.-||.||.... +-.... .-..
T Consensus 94 l~~~L~~-~~~LlVlDdv~~~~----------------~~~~l~~~~~--~~~~~~kilvTTR~~~-v~~~~~---~~~~ 150 (287)
T PF00931_consen 94 LRELLKD-KRCLLVLDDVWDEE----------------DLEELREPLP--SFSSGSKILVTTRDRS-VAGSLG---GTDK 150 (287)
T ss_dssp HHHHHCC-TSEEEEEEEE-SHH----------------HH-------H--CHHSS-EEEEEESCGG-GGTTHH---SCEE
T ss_pred chhhhcc-ccceeeeeeecccc----------------cccccccccc--cccccccccccccccc-cccccc---cccc
Confidence 3343333 49999999988642 1112222221 1222455677777643 222221 1267
Q ss_pred EEecCCCCHHHHHHHHHhhcCCC---------CCHHHHHhCCCCCCHHHHHHH
Q 030960 85 KIEFPLPDRRQKRLVFQMNLSDE---------VDLEDYVSRPDKISAAEIAAI 128 (168)
Q Consensus 85 ~i~~~~P~~~~R~~il~~~l~~~---------~~~~~la~~t~g~s~~di~~l 128 (168)
.++++..+.++-.++|....... ....++++.+.| .|--|..+
T Consensus 151 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 151 VIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp EEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 89999999999999998665421 124568888865 45555544
No 221
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=89.05 E-value=1.1 Score=36.04 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=11.6
Q ss_pred CCeEEEEccccccc
Q 030960 13 APAIIFIDEVDAIA 26 (168)
Q Consensus 13 ~p~ii~iDe~D~l~ 26 (168)
....|||||+|.+-
T Consensus 93 ~gGtL~Ldei~~L~ 106 (329)
T TIGR02974 93 DGGTLFLDELATAS 106 (329)
T ss_pred CCCEEEeCChHhCC
Confidence 36889999999873
No 222
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=88.25 E-value=2.1 Score=36.65 Aligned_cols=117 Identities=21% Similarity=0.302 Sum_probs=59.6
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC--C---CC----CCCeEEEEecCCCCCCCccccCCCCcc-
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG--F---DQ----TVNVKVIMATNRADTLDPALLRPGRLD- 83 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~--~---~~----~~~v~vi~ttn~~~~ld~al~r~grf~- 83 (168)
...|||||+|.+-. .....++..++. + .. ...+-+|++|+.. +.. +...|+|.
T Consensus 291 ~GtL~ldei~~L~~--------------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~--l~~-~~~~~~f~~ 353 (534)
T TIGR01817 291 GGTLFLDEIGEISP--------------AFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD--LEE-AVAKGEFRA 353 (534)
T ss_pred CCeEEEechhhCCH--------------HHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCC--HHH-HHHcCCCCH
Confidence 57899999998732 222334444432 1 11 1246788887643 111 22345552
Q ss_pred --------eEEecCCCC--HHHHHHHHHhhcCC-------CC--C---HHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCC
Q 030960 84 --------RKIEFPLPD--RRQKRLVFQMNLSD-------EV--D---LEDYVSRPDKISAAEIAAICQEAGMHAVRKNR 141 (168)
Q Consensus 84 --------~~i~~~~P~--~~~R~~il~~~l~~-------~~--~---~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~ 141 (168)
..|.+|+.. .++...++++++.. .. + +..|..+.=--..++|+++++.++..+ ..
T Consensus 354 ~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~ 430 (534)
T TIGR01817 354 DLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLS---RS 430 (534)
T ss_pred HHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CC
Confidence 345555443 34444555555431 11 1 122233221124578888888776543 34
Q ss_pred CccCHHHHH
Q 030960 142 YVILPKDFE 150 (168)
Q Consensus 142 ~~i~~~d~~ 150 (168)
..|+.+|+.
T Consensus 431 ~~I~~~~l~ 439 (534)
T TIGR01817 431 GTITRSDFS 439 (534)
T ss_pred CcccHHHCc
Confidence 568888875
No 223
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=87.93 E-value=2.7 Score=36.78 Aligned_cols=121 Identities=21% Similarity=0.328 Sum_probs=61.5
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC-----CCCC----CCeEEEEecCCCCCCCccccCCCCcce
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-----FDQT----VNVKVIMATNRADTLDPALLRPGRLDR 84 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~~----~~v~vi~ttn~~~~ld~al~r~grf~~ 84 (168)
...|||||+|.+-. .+...++..++. +... ..+-+|+||+..- ..+...|+|..
T Consensus 417 ~GtL~ldei~~l~~--------------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l---~~~~~~~~f~~ 479 (638)
T PRK11388 417 GGTLFLEKVEYLSP--------------ELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADL---AMLVEQNRFSR 479 (638)
T ss_pred CCEEEEcChhhCCH--------------HHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCH---HHHHhcCCChH
Confidence 57899999998732 222233333321 1111 1467888887542 23333456532
Q ss_pred -------EEecCCCCHHHHH----HHHHhhcCC-------C--CC---HHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCC
Q 030960 85 -------KIEFPLPDRRQKR----LVFQMNLSD-------E--VD---LEDYVSRPDKISAAEIAAICQEAGMHAVRKNR 141 (168)
Q Consensus 85 -------~i~~~~P~~~~R~----~il~~~l~~-------~--~~---~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~ 141 (168)
.+.+..|...+|. .+++.++.. . +. +..|..+.=--..++|.++++.++..+ ..
T Consensus 480 dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~---~~ 556 (638)
T PRK11388 480 QLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS---DN 556 (638)
T ss_pred HHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhC---CC
Confidence 3455566666663 333333321 1 11 122222221124588888888776543 33
Q ss_pred CccCHHHHHHHHH
Q 030960 142 YVILPKDFEKGYR 154 (168)
Q Consensus 142 ~~i~~~d~~~al~ 154 (168)
..|+.+|+...+.
T Consensus 557 ~~i~~~~lp~~~~ 569 (638)
T PRK11388 557 GRIRLSDLPEHLF 569 (638)
T ss_pred CeecHHHCchhhh
Confidence 4678888776664
No 224
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=87.85 E-value=1.4 Score=35.87 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=50.4
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC-CCCCCeEEEEecCCCCC---CCccccCCCCcceE-Eec
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-DQTVNVKVIMATNRADT---LDPALLRPGRLDRK-IEF 88 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~v~vi~ttn~~~~---ld~al~r~grf~~~-i~~ 88 (168)
|.|.++||+|.+++-. +++ .+.+.+|-. ....++.|||.|.+.+. +.+.+.+ ||.+. |++
T Consensus 138 ~ViFIldEfDlf~~h~-----------rQt--llYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m 202 (408)
T KOG2228|consen 138 KVIFILDEFDLFAPHS-----------RQT--LLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFM 202 (408)
T ss_pred eEEEEeehhhccccch-----------hhH--HHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeec
Confidence 5677788999987432 011 123333322 23558999998888765 4567888 99987 666
Q ss_pred CCC-CHHHHHHHHHhhc
Q 030960 89 PLP-DRRQKRLVFQMNL 104 (168)
Q Consensus 89 ~~P-~~~~R~~il~~~l 104 (168)
.+| ..++-..+++..+
T Consensus 203 ~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 203 LPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cCCCChHHHHHHHHHHh
Confidence 443 6788888888655
No 225
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=87.71 E-value=2.2 Score=29.43 Aligned_cols=64 Identities=23% Similarity=0.284 Sum_probs=36.1
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
++..+....|.+++|||+..+..................+..++..+. ..++.+|++++.....
T Consensus 77 ~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 77 AERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCCcc
Confidence 455667778999999999998754321111222223344444444443 2356666666655544
No 226
>PRK04841 transcriptional regulator MalT; Provisional
Probab=87.67 E-value=3.8 Score=37.05 Aligned_cols=94 Identities=18% Similarity=0.272 Sum_probs=52.4
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecC--
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFP-- 89 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~-- 89 (168)
..|.+|+|||++.+-. ......+..++... .+++.+|.+|.....++-.-++ .-+..+.++
T Consensus 120 ~~~~~lvlDD~h~~~~----------~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~--~~~~~~~l~~~ 182 (903)
T PRK04841 120 HQPLYLVIDDYHLITN----------PEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLR--VRDQLLEIGSQ 182 (903)
T ss_pred CCCEEEEEeCcCcCCC----------hHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHH--hcCcceecCHH
Confidence 5699999999998721 11224455554433 2234344455442222211111 112345555
Q ss_pred --CCCHHHHHHHHHhhcCCC---CCHHHHHhCCCCCCH
Q 030960 90 --LPDRRQKRLVFQMNLSDE---VDLEDYVSRPDKISA 122 (168)
Q Consensus 90 --~P~~~~R~~il~~~l~~~---~~~~~la~~t~g~s~ 122 (168)
+.+.++-.+++...+... .+...+.+.|+|+-.
T Consensus 183 ~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 183 QLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWAT 220 (903)
T ss_pred hCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHH
Confidence 668899999998666533 345667788888754
No 227
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=86.74 E-value=1.6 Score=39.78 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC---------CCCCeEEEEecCC
Q 030960 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD---------QTVNVKVIMATNR 68 (168)
Q Consensus 4 ~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vi~ttn~ 68 (168)
.+.+..++..-+||||||+|.- +. .+.+.|+..+|.-. .-++++||+|+|.
T Consensus 651 ~LteavrrrP~sVVLfdeIEkA-----------h~---~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 651 QLTEAVKRRPYSVVLFEEIEKA-----------HP---DVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred HHHHHHhcCCceEEEEechhhc-----------CH---HHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 5677778888999999999953 22 56666677676432 2335899999876
No 228
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=86.65 E-value=0.99 Score=33.38 Aligned_cols=68 Identities=10% Similarity=0.227 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
..+.+.+....|.+|+||-+..++....... .. ...+.+..++..+..+.+..++.+|.|+......+
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~--~~-~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~~~ 154 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYRLELSDD--RI-SRNRELARQLTLLLSLARKKNLAVVITNQVYTDVN 154 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhHHHhCCc--cH-HHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEecC
Confidence 3445556666899999999999874321111 11 11223333444444444566777887765444443
No 229
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=86.51 E-value=7.4 Score=34.56 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 120 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 120 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
-+++.++.+.+.+...|-.+....+...|+++|+.-
T Consensus 688 at~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l 723 (804)
T KOG0478|consen 688 ATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRL 723 (804)
T ss_pred hhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 467889999888887777777788888999988854
No 230
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=86.26 E-value=3.4 Score=37.66 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=64.9
Q ss_pred eEEEEcccccccc-cccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCH
Q 030960 15 AIIFIDEVDAIAT-ARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (168)
Q Consensus 15 ~ii~iDe~D~l~~-~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~ 93 (168)
.||++||+|.++. .| ..+..+...+. ...+-+|.++|..+--+..... |-..-++|+.|+.
T Consensus 430 ~vil~devD~~~~~dR------------g~v~~l~~l~~----ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~ 491 (871)
T KOG1968|consen 430 FLILMDEVDGMFGEDR------------GGVSKLSSLCK----KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSS 491 (871)
T ss_pred eEEEEeccccccchhh------------hhHHHHHHHHH----hccCCeEEEecCCCCccccchh--hhcceeeecCCcH
Confidence 3999999999874 11 22222222232 2344588888888877775555 6668899999999
Q ss_pred HHHHHHHHhhcC-C-----CCCHHHHHhCCCCCCHHHHHHHHHHHHHH
Q 030960 94 RQKRLVFQMNLS-D-----EVDLEDYVSRPDKISAAEIAAICQEAGMH 135 (168)
Q Consensus 94 ~~R~~il~~~l~-~-----~~~~~~la~~t~g~s~~di~~l~~~a~~~ 135 (168)
..+..-+..... + +-.++++.+.+ ++||...+..-.+.
T Consensus 492 ~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 492 ELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQLQFW 535 (871)
T ss_pred HHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHHHhhh
Confidence 998876654333 2 33456666655 78888877765554
No 231
>PHA00012 I assembly protein
Probab=85.92 E-value=0.59 Score=37.72 Aligned_cols=80 Identities=10% Similarity=0.120 Sum_probs=50.4
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCC-C----CcceEE
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRP-G----RLDRKI 86 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~-g----rf~~~i 86 (168)
..-+++++||+...++.|....... .-+.+++... ...+.-+|.+|.+|..+|+.++.. + |+-+.-
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p-----~~vie~l~~h----Rh~G~DvilITQ~ps~VDs~IR~ll~eH~v~cRRld 150 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKER-----QPVIDWFLHA----RKLGWDIIFIIQDISIMDKQAREALAEHVVYCRRLD 150 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCc-----HHHHHHHHHh----ccCCceEEEEcCCHHHHhHHHHHhhhheEEEEEecc
Confidence 3468999999999999985544322 2122333322 344677999999999999998731 1 122222
Q ss_pred ecCCCCHHHHHHHH
Q 030960 87 EFPLPDRRQKRLVF 100 (168)
Q Consensus 87 ~~~~P~~~~R~~il 100 (168)
.+..|-...-..++
T Consensus 151 ~~~iP~i~~~~~~~ 164 (361)
T PHA00012 151 KITIPFIGTLYSVL 164 (361)
T ss_pred ccccceehhHHHHh
Confidence 45566656655555
No 232
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=85.78 E-value=12 Score=29.76 Aligned_cols=123 Identities=12% Similarity=0.150 Sum_probs=63.2
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC---CCCccccCCCCcceEEecCC
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD---TLDPALLRPGRLDRKIEFPL 90 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~---~ld~al~r~grf~~~i~~~~ 90 (168)
+-+|++++.+.+-. .. ......+...+++... ..++|+.+++.++ .+...+.. +.....+.+
T Consensus 62 ~rlVvv~~~~~~~~--------~~---~~~~~~L~~~l~~~~~-~~~li~~~~~~~d~r~k~~k~l~k---~~~~~~~~~ 126 (326)
T PRK07452 62 GRLVWLKNSPLCQG--------CS---EELLAELERTLPLIPE-NTHLLLTNTKKPDGRLKSTKLLQK---LAEEKEFSL 126 (326)
T ss_pred ceEEEEeCchhhcc--------CC---HHHHHHHHHHHcCCCC-CcEEEEEeCCCcchHHHHHHHHHH---ceeEEEecC
Confidence 56677777654311 11 1344566666765433 3455655544332 12223332 344555544
Q ss_pred C---CHHHHHHHHHhhcCC---CC---CHHHHHhCCCCCCHHHHHHHHHHHHHHHHH--hCCCccCHHHHHHHHHh
Q 030960 91 P---DRRQKRLVFQMNLSD---EV---DLEDYVSRPDKISAAEIAAICQEAGMHAVR--KNRYVILPKDFEKGYRT 155 (168)
Q Consensus 91 P---~~~~R~~il~~~l~~---~~---~~~~la~~t~g~s~~di~~l~~~a~~~a~~--~~~~~i~~~d~~~al~~ 155 (168)
| +.++...+++..+.. .+ .+..+++.+. .|+..+.++.-..+.- .....||.+|+.+.+..
T Consensus 127 ~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g----~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~ 198 (326)
T PRK07452 127 IPPWDTEGLKQLVERTAQELGVKLTPEAAELLAEAVG----NDSRRLYNELEKLALYAENSTKPISAEEVKALVSN 198 (326)
T ss_pred CCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC----ccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhcc
Confidence 4 445555666544431 22 2344555443 4555555555555444 23457999999988764
No 233
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=84.56 E-value=1.8 Score=36.43 Aligned_cols=79 Identities=28% Similarity=0.402 Sum_probs=44.5
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC-----CC------CCCeEEEE-------ecCCCCCCCc
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-----DQ------TVNVKVIM-------ATNRADTLDP 74 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~~------~~~v~vi~-------ttn~~~~ld~ 74 (168)
+-.||||||+|.+...........+-..+.+...||..+++- .+ ....+.|- ++..-..||.
T Consensus 291 QqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk 370 (564)
T KOG0745|consen 291 QQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDK 370 (564)
T ss_pred hcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHH
Confidence 459999999999984432222111112235666677777653 01 11122333 3334456787
Q ss_pred cccCCCCcc-eEEecCCCCH
Q 030960 75 ALLRPGRLD-RKIEFPLPDR 93 (168)
Q Consensus 75 al~r~grf~-~~i~~~~P~~ 93 (168)
-+-| |.+ ..+-|+.|+.
T Consensus 371 ~I~r--R~~d~slGFg~~s~ 388 (564)
T KOG0745|consen 371 IISR--RLDDKSLGFGAPSS 388 (564)
T ss_pred HHHH--hhcchhcccCCCCC
Confidence 7776 654 6677888833
No 234
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=84.35 E-value=3 Score=30.62 Aligned_cols=45 Identities=36% Similarity=0.536 Sum_probs=25.8
Q ss_pred eEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 15 ~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+++|||.|.-+.. ...+.+-.++..+. . .++=||.||++|.-||
T Consensus 259 ~illiDEpE~~LHp----------~~q~~l~~~l~~~~---~-~~~QviitTHSp~ild 303 (303)
T PF13304_consen 259 SILLIDEPENHLHP----------SWQRKLIELLKELS---K-KNIQVIITTHSPFILD 303 (303)
T ss_dssp SEEEEESSSTTSSH----------HHHHHHHHHHHHTG---G-GSSEEEEEES-GGG--
T ss_pred eEEEecCCcCCCCH----------HHHHHHHHHHHhhC---c-cCCEEEEeCccchhcC
Confidence 99999999986532 22222223443332 2 3555899999987654
No 235
>PRK15115 response regulator GlrR; Provisional
Probab=83.99 E-value=6.6 Score=32.56 Aligned_cols=120 Identities=15% Similarity=0.274 Sum_probs=61.1
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC-----CCC----CCCeEEEEecCCCCCCCccccCCCCcce
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-----FDQ----TVNVKVIMATNRADTLDPALLRPGRLDR 84 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~----~~~v~vi~ttn~~~~ld~al~r~grf~~ 84 (168)
...|||||+|.+-.. ....++..++. +.. ...+.+|+||+. +++..+. .|+|..
T Consensus 229 ~gtl~l~~i~~l~~~--------------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~--~l~~~~~-~~~f~~ 291 (444)
T PRK15115 229 GGTLFLDEIGDMPAP--------------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR--DLPKAMA-RGEFRE 291 (444)
T ss_pred CCEEEEEccccCCHH--------------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC--CHHHHHH-cCCccH
Confidence 578999999987421 22223333321 111 125788888885 3444443 366632
Q ss_pred -------EEecCCCCHHHHHH----HHHhhcCC-------C---CC---HHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC
Q 030960 85 -------KIEFPLPDRRQKRL----VFQMNLSD-------E---VD---LEDYVSRPDKISAAEIAAICQEAGMHAVRKN 140 (168)
Q Consensus 85 -------~i~~~~P~~~~R~~----il~~~l~~-------~---~~---~~~la~~t~g~s~~di~~l~~~a~~~a~~~~ 140 (168)
.+.+..|...+|.+ ++++++.. . ++ +..|..+.=--..++|.++++.++.. ..
T Consensus 292 ~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~---~~ 368 (444)
T PRK15115 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL---TS 368 (444)
T ss_pred HHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh---CC
Confidence 23455566666642 33333321 1 11 22233332122457777777776543 23
Q ss_pred CCccCHHHHHHHH
Q 030960 141 RYVILPKDFEKGY 153 (168)
Q Consensus 141 ~~~i~~~d~~~al 153 (168)
...|+.+++...+
T Consensus 369 ~~~i~~~~l~~~~ 381 (444)
T PRK15115 369 SPVISDALVEQAL 381 (444)
T ss_pred CCccChhhhhhhh
Confidence 4457777765444
No 236
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=83.37 E-value=5.8 Score=31.81 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=11.0
Q ss_pred CeEEEEccccccc
Q 030960 14 PAIIFIDEVDAIA 26 (168)
Q Consensus 14 p~ii~iDe~D~l~ 26 (168)
...|||||+|.+-
T Consensus 101 gGtL~l~~i~~L~ 113 (326)
T PRK11608 101 GGTLFLDELATAP 113 (326)
T ss_pred CCeEEeCChhhCC
Confidence 5789999999874
No 237
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=83.20 E-value=1.5 Score=34.32 Aligned_cols=85 Identities=19% Similarity=0.419 Sum_probs=44.7
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhc---cC--C--CCCCCeEEEEecCCCC---CCCccccCCCCc
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQM---DG--F--DQTVNVKVIMATNRAD---TLDPALLRPGRL 82 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l---~~--~--~~~~~v~vi~ttn~~~---~ld~al~r~grf 82 (168)
..+|+||||+..-..+. .+.. ....++.++++.= |. + ..-..+-+||+.+.+. .+++.++| .|
T Consensus 100 k~lv~fiDDlN~p~~d~----ygtq-~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f 172 (272)
T PF12775_consen 100 KKLVLFIDDLNMPQPDK----YGTQ-PPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF 172 (272)
T ss_dssp SEEEEEEETTT-S---T----TS---HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE
T ss_pred cEEEEEecccCCCCCCC----CCCc-CHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he
Confidence 46899999998654333 1111 1224444444331 11 0 1122477888876422 47777776 55
Q ss_pred ceEEecCCCCHHHHHHHHHhhcC
Q 030960 83 DRKIEFPLPDRRQKRLVFQMNLS 105 (168)
Q Consensus 83 ~~~i~~~~P~~~~R~~il~~~l~ 105 (168)
..+.++.|+.+.-..|+...+.
T Consensus 173 -~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 173 -NILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp -EEEE----TCCHHHHHHHHHHH
T ss_pred -EEEEecCCChHHHHHHHHHHHh
Confidence 4789999999988888774443
No 238
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=82.87 E-value=3.6 Score=34.10 Aligned_cols=13 Identities=23% Similarity=0.646 Sum_probs=11.1
Q ss_pred CeEEEEccccccc
Q 030960 14 PAIIFIDEVDAIA 26 (168)
Q Consensus 14 p~ii~iDe~D~l~ 26 (168)
...|||||+|.+-
T Consensus 234 ~gtl~l~~i~~l~ 246 (445)
T TIGR02915 234 GGTLFLDEIGDLP 246 (445)
T ss_pred CCEEEEechhhCC
Confidence 5789999999874
No 239
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=82.47 E-value=7.8 Score=32.27 Aligned_cols=119 Identities=20% Similarity=0.318 Sum_probs=61.3
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC-----CC----CCCCeEEEEecCCCCCCCccccCCCCcc-
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-----FD----QTVNVKVIMATNRADTLDPALLRPGRLD- 83 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~----~~~~v~vi~ttn~~~~ld~al~r~grf~- 83 (168)
...|||||+|.+-.. +...++..++. .. ....+-+|++|+..- + .+...|+|.
T Consensus 229 ~gtl~l~ei~~l~~~--------------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l--~-~~~~~~~f~~ 291 (463)
T TIGR01818 229 GGTLFLDEIGDMPLD--------------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNL--E-ALVRQGKFRE 291 (463)
T ss_pred CCeEEEEchhhCCHH--------------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCH--H-HHHHcCCcHH
Confidence 678999999987421 12223333321 11 112466788776432 1 222334443
Q ss_pred --------eEEecCCCC--HHHHHHHHHhhcCC----------CCC---HHHHHhCCCCC--CHHHHHHHHHHHHHHHHH
Q 030960 84 --------RKIEFPLPD--RRQKRLVFQMNLSD----------EVD---LEDYVSRPDKI--SAAEIAAICQEAGMHAVR 138 (168)
Q Consensus 84 --------~~i~~~~P~--~~~R~~il~~~l~~----------~~~---~~~la~~t~g~--s~~di~~l~~~a~~~a~~ 138 (168)
..|++|+.. .++...++++++.. .++ +..|..+ +| ..++|++++..++..+
T Consensus 292 ~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~wpgNvreL~~~~~~~~~~~-- 367 (463)
T TIGR01818 292 DLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL--RWPGNVRQLENLCRWLTVMA-- 367 (463)
T ss_pred HHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC--CCCChHHHHHHHHHHHHHhC--
Confidence 355565554 44555555555431 111 1122222 33 2378888888776544
Q ss_pred hCCCccCHHHHHHHHH
Q 030960 139 KNRYVILPKDFEKGYR 154 (168)
Q Consensus 139 ~~~~~i~~~d~~~al~ 154 (168)
....|+.+|+...+.
T Consensus 368 -~~~~i~~~~l~~~~~ 382 (463)
T TIGR01818 368 -SGDEVLVSDLPAELA 382 (463)
T ss_pred -CCCcccHHhchHHHh
Confidence 234688888866553
No 240
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=82.43 E-value=1.5 Score=30.57 Aligned_cols=52 Identities=25% Similarity=0.309 Sum_probs=28.1
Q ss_pred eEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC---------CCCCCeEEEEecCCCC-----CCCccccCCC
Q 030960 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF---------DQTVNVKVIMATNRAD-----TLDPALLRPG 80 (168)
Q Consensus 15 ~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~v~vi~ttn~~~-----~ld~al~r~g 80 (168)
.|+++||+...- . ++.+.+|+.|..- .-..+.+||||-|..+ .||.+++.
T Consensus 64 ~ill~DEiNrap-----------p---ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D-- 127 (131)
T PF07726_consen 64 NILLADEINRAP-----------P---KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD-- 127 (131)
T ss_dssp SEEEEETGGGS------------H---HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--
T ss_pred ceeeecccccCC-----------H---HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--
Confidence 589999987532 1 4445556555421 1233588888988766 67777776
Q ss_pred Cc
Q 030960 81 RL 82 (168)
Q Consensus 81 rf 82 (168)
||
T Consensus 128 RF 129 (131)
T PF07726_consen 128 RF 129 (131)
T ss_dssp TS
T ss_pred cc
Confidence 76
No 241
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=82.31 E-value=3.6 Score=25.05 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 124 EIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 124 di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
-|..++++|...+....+..+|.+|+..||+
T Consensus 36 rlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 36 RLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp HHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 4566777787777777778899999999985
No 242
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=82.25 E-value=13 Score=35.13 Aligned_cols=71 Identities=25% Similarity=0.373 Sum_probs=44.5
Q ss_pred HcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCC
Q 030960 11 ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 90 (168)
Q Consensus 11 ~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~ 90 (168)
...+.+|++||+|.. ..+..+....+.+ ..+..||.||.+.. +.+....++.++++.
T Consensus 294 ~~krvLLVLDdv~~~----------------~~l~~L~~~~~~~--~~GsrIIiTTrd~~-----vl~~~~~~~~~~v~~ 350 (1153)
T PLN03210 294 KHRKVLIFIDDLDDQ----------------DVLDALAGQTQWF--GSGSRIIVITKDKH-----FLRAHGIDHIYEVCL 350 (1153)
T ss_pred hCCeEEEEEeCCCCH----------------HHHHHHHhhCccC--CCCcEEEEEeCcHH-----HHHhcCCCeEEEecC
Confidence 346889999998742 2233333322211 22344666777543 333345788999999
Q ss_pred CCHHHHHHHHHhhc
Q 030960 91 PDRRQKRLVFQMNL 104 (168)
Q Consensus 91 P~~~~R~~il~~~l 104 (168)
|+.++..++|..+.
T Consensus 351 l~~~ea~~LF~~~A 364 (1153)
T PLN03210 351 PSNELALEMFCRSA 364 (1153)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999997543
No 243
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=81.96 E-value=3.5 Score=32.78 Aligned_cols=87 Identities=17% Similarity=0.279 Sum_probs=58.4
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCCH
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~ 93 (168)
--+|+|.|+|.|..+. . ..+-.-|+. ..++.-+|..+|+...+=+++++ |. ..+.++.|+.
T Consensus 128 fKvvvi~ead~LT~dA-------Q-------~aLRRTMEk--Ys~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~ 188 (351)
T KOG2035|consen 128 FKVVVINEADELTRDA-------Q-------HALRRTMEK--YSSNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSD 188 (351)
T ss_pred eEEEEEechHhhhHHH-------H-------HHHHHHHHH--HhcCceEEEEecCcccchhHHhh--he-eEEeCCCCCH
Confidence 3588999999885321 1 112223332 23356678888999999999998 64 4688999999
Q ss_pred HHHHHHHHhhcCC------CCCHHHHHhCCCC
Q 030960 94 RQKRLVFQMNLSD------EVDLEDYVSRPDK 119 (168)
Q Consensus 94 ~~R~~il~~~l~~------~~~~~~la~~t~g 119 (168)
++...++..-+.. +--+.++|+.++|
T Consensus 189 eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 189 EEITSVLSKVLKKEGLQLPKELLKRIAEKSNR 220 (351)
T ss_pred HHHHHHHHHHHHHhcccCcHHHHHHHHHHhcc
Confidence 9999999855542 2335566666654
No 244
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=81.15 E-value=10 Score=31.09 Aligned_cols=28 Identities=18% Similarity=0.495 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccc
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATAR 29 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~ 29 (168)
+..+++.++...|.+|+||.+-.++...
T Consensus 147 le~I~~~i~~~~~~lVVIDSIq~l~~~~ 174 (372)
T cd01121 147 LEDILASIEELKPDLVIIDSIQTVYSSE 174 (372)
T ss_pred HHHHHHHHHhcCCcEEEEcchHHhhccc
Confidence 4567778888899999999999987443
No 245
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=80.53 E-value=3.9 Score=24.44 Aligned_cols=30 Identities=30% Similarity=0.251 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 124 EIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 124 di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
=|..++.+|...+...+++.|+.+|+..|+
T Consensus 36 Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 36 FIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp HHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 466678888888888889999999999885
No 246
>COG1485 Predicted ATPase [General function prediction only]
Probab=80.29 E-value=1.9 Score=35.08 Aligned_cols=46 Identities=24% Similarity=0.308 Sum_probs=30.2
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCC-CCCCCc
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR-ADTLDP 74 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~-~~~ld~ 74 (168)
--||.|||+..- +..-.-+++.|++.|- ..+|++|+|+|. |++|-+
T Consensus 131 ~~vLCfDEF~Vt-----------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~LY~ 177 (367)
T COG1485 131 TRVLCFDEFEVT-----------DIADAMILGRLLEALF----ARGVVLVATSNTAPDNLYK 177 (367)
T ss_pred CCEEEeeeeeec-----------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHhcc
Confidence 468999998742 1122356667777663 338999999997 555544
No 247
>PF13173 AAA_14: AAA domain
Probab=80.07 E-value=4.4 Score=27.51 Aligned_cols=64 Identities=28% Similarity=0.350 Sum_probs=34.4
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCc--cccCCCCcceEEecCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP--ALLRPGRLDRKIEFPL 90 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~--al~r~grf~~~i~~~~ 90 (168)
++.+|+|||+..+- .. ...+..+. +. ..++-+|.|++....+.. +-.-+||.. .+++.|
T Consensus 61 ~~~~i~iDEiq~~~--------~~----~~~lk~l~---d~---~~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~P 121 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--------DW----EDALKFLV---DN---GPNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYP 121 (128)
T ss_pred CCcEEEEehhhhhc--------cH----HHHHHHHH---Hh---ccCceEEEEccchHHHhhcccccCCCeEE-EEEECC
Confidence 67999999998761 11 13333332 21 124445555554444422 222345765 677888
Q ss_pred CCHHH
Q 030960 91 PDRRQ 95 (168)
Q Consensus 91 P~~~~ 95 (168)
.+..|
T Consensus 122 lsf~E 126 (128)
T PF13173_consen 122 LSFRE 126 (128)
T ss_pred CCHHH
Confidence 77765
No 248
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=80.04 E-value=6 Score=33.77 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 030960 121 SAAEIAAICQEAGMHAVR 138 (168)
Q Consensus 121 s~~di~~l~~~a~~~a~~ 138 (168)
..++|+++++.|+..+..
T Consensus 405 NvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 405 NVRELEHVISRAALLARA 422 (509)
T ss_pred cHHHHHHHHHHHHHhcCC
Confidence 558999999988876643
No 249
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=79.46 E-value=4.2 Score=24.63 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 123 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 123 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
--+..++++|...+-..+++.++.+|+..|++
T Consensus 34 ~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 34 YRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred HHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 45667788888888788889999999998874
No 250
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=78.76 E-value=8.2 Score=28.52 Aligned_cols=65 Identities=20% Similarity=0.139 Sum_probs=38.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceE
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRK 85 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~ 85 (168)
+..|-...|.++++||--. +-+......+..++..+. .. +..+|.+|++.+.++. +..
T Consensus 138 la~al~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~~~--------~~~ 195 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTA----------ALDAAAVALFAELIRAHL---AQ-GGIVIAATHIPLGLPG--------ARE 195 (207)
T ss_pred HHHHHhcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCchhhcc--------CcE
Confidence 4455566799999999553 223323344444444432 22 4568888888887774 445
Q ss_pred EecCCCC
Q 030960 86 IEFPLPD 92 (168)
Q Consensus 86 i~~~~P~ 92 (168)
+.+..|.
T Consensus 196 ~~~~~~~ 202 (207)
T PRK13539 196 LDLGPFA 202 (207)
T ss_pred EeecCcc
Confidence 6665554
No 251
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=77.77 E-value=7.1 Score=29.81 Aligned_cols=65 Identities=29% Similarity=0.437 Sum_probs=35.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcce
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDR 84 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~ 84 (168)
....|-.+.|.||+-||= . ..-+......+-.++..+ .+..+..+|+.|.++. +-. ++|+
T Consensus 152 AIARAL~~~P~iilADEP---------T-gnLD~~t~~~V~~ll~~~---~~~~g~tii~VTHd~~-----lA~--~~dr 211 (226)
T COG1136 152 AIARALINNPKIILADEP---------T-GNLDSKTAKEVLELLREL---NKERGKTIIMVTHDPE-----LAK--YADR 211 (226)
T ss_pred HHHHHHhcCCCeEEeeCc---------c-ccCChHHHHHHHHHHHHH---HHhcCCEEEEEcCCHH-----HHH--hCCE
Confidence 455666788999999991 1 122222223333344444 3343445677777544 333 6777
Q ss_pred EEecC
Q 030960 85 KIEFP 89 (168)
Q Consensus 85 ~i~~~ 89 (168)
.|++.
T Consensus 212 ~i~l~ 216 (226)
T COG1136 212 VIELK 216 (226)
T ss_pred EEEEe
Confidence 77653
No 252
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=76.98 E-value=3.8 Score=33.52 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=29.9
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCC-CCCCCc
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR-ADTLDP 74 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~-~~~ld~ 74 (168)
-.+|.|||+..- +....-++..+++.+- ..+|++|+|+|+ |++|-+
T Consensus 128 ~~lLcfDEF~V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~ 174 (362)
T PF03969_consen 128 SRLLCFDEFQVT-----------DIADAMILKRLFEALF----KRGVVLVATSNRPPEDLYK 174 (362)
T ss_pred CCEEEEeeeecc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCChHHHcC
Confidence 459999999853 1112356666666653 358999999997 444443
No 253
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=76.88 E-value=9.8 Score=31.17 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=53.2
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC--C--CC-----CCeEEEEecCCC-------CCCCcccc
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--D--QT-----VNVKVIMATNRA-------DTLDPALL 77 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~--~~-----~~v~vi~ttn~~-------~~ld~al~ 77 (168)
..|+-|+|++..- ..++..||+.++.- . +. -..++|++||.. .....+++
T Consensus 237 rGi~~f~Ei~K~~--------------~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~ 302 (361)
T smart00763 237 RGILEFVEMFKAD--------------IKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALL 302 (361)
T ss_pred CceEEEeehhcCC--------------HHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhh
Confidence 3677777776531 25677777777632 1 11 126789999988 36789999
Q ss_pred CCCCcceEEecCCC-CHHHHHHHHHhhcCC
Q 030960 78 RPGRLDRKIEFPLP-DRRQKRLVFQMNLSD 106 (168)
Q Consensus 78 r~grf~~~i~~~~P-~~~~R~~il~~~l~~ 106 (168)
+ |+. .+.++.| +..+-.+|.+..+..
T Consensus 303 d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 303 D--RII-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred h--ceE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 9 998 8899877 667777888877764
No 254
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.52 E-value=14 Score=33.70 Aligned_cols=109 Identities=21% Similarity=0.280 Sum_probs=65.5
Q ss_pred HHHHHH-HHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 3 RDVFRL-AKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 3 ~~iF~~-a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
..+|.. +....|+.++|||.+.+- ++.....+.-|++.. .+++.+|.+|..--.+.-+=.| -
T Consensus 118 ~~L~~Ela~~~~pl~LVlDDyHli~----------~~~l~~~l~fLl~~~-----P~~l~lvv~SR~rP~l~la~lR--l 180 (894)
T COG2909 118 SSLLNELASYEGPLYLVLDDYHLIS----------DPALHEALRFLLKHA-----PENLTLVVTSRSRPQLGLARLR--L 180 (894)
T ss_pred HHHHHHHHhhcCceEEEeccccccC----------cccHHHHHHHHHHhC-----CCCeEEEEEeccCCCCccccee--e
Confidence 444443 445679999999999773 122234444444333 4577777777665555544443 2
Q ss_pred cceEEecC----CCCHHHHHHHHHhhcC---CCCCHHHHHhCCCCCCH-HHHHHH
Q 030960 82 LDRKIEFP----LPDRRQKRLVFQMNLS---DEVDLEDYVSRPDKISA-AEIAAI 128 (168)
Q Consensus 82 f~~~i~~~----~P~~~~R~~il~~~l~---~~~~~~~la~~t~g~s~-~di~~l 128 (168)
=|..++++ .-+.++-.+++..... +..+++.+-..|+|+.. -.+..+
T Consensus 181 r~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 181 RDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred hhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHH
Confidence 24555555 4577888888886654 34567777888888643 344433
No 255
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=76.07 E-value=4.3 Score=31.90 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=15.5
Q ss_pred HcCCeEEEEcccccccccc
Q 030960 11 ENAPAIIFIDEVDAIATAR 29 (168)
Q Consensus 11 ~~~p~ii~iDe~D~l~~~~ 29 (168)
..+|.||+|||-|..+.+.
T Consensus 141 ~~~kvvlLIDEYD~p~~~~ 159 (284)
T PF09820_consen 141 YGKKVVLLIDEYDKPINDA 159 (284)
T ss_pred hCCceEEEecCccHHHHHH
Confidence 3469999999999987554
No 256
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=75.88 E-value=22 Score=29.82 Aligned_cols=84 Identities=15% Similarity=0.372 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEe-cCCCCCCCccccCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMA-TNRADTLDPALLRPG 80 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~t-tn~~~~ld~al~r~g 80 (168)
+..|.+.+...+|.+++||-|-.++...-++..++-...+.....++..-. ...-.+++++- |-.-.---|.++- |
T Consensus 157 ~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK--~~~i~~fiVGHVTKeG~IAGPrvLE-H 233 (456)
T COG1066 157 LEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK--TKNIAIFIVGHVTKEGAIAGPRVLE-H 233 (456)
T ss_pred HHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH--HcCCeEEEEEEEcccccccCchhee-e
Confidence 577889999999999999999999977644444444444455554444332 12223555553 3222222333332 3
Q ss_pred CcceEEec
Q 030960 81 RLDRKIEF 88 (168)
Q Consensus 81 rf~~~i~~ 88 (168)
-.|.+++|
T Consensus 234 mVDtVlyF 241 (456)
T COG1066 234 MVDTVLYF 241 (456)
T ss_pred eeeEEEEE
Confidence 34445554
No 257
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=74.12 E-value=15 Score=32.56 Aligned_cols=107 Identities=17% Similarity=0.239 Sum_probs=53.6
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC-----CC----CCCCeEEEEecCCCCCCCccccCCCCcc
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-----FD----QTVNVKVIMATNRADTLDPALLRPGRLD 83 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~----~~~~v~vi~ttn~~~~ld~al~r~grf~ 83 (168)
....|||||+|.+-. .+...++..++. .. ...++-+|++|+..- . .+...|+|.
T Consensus 470 ~~GtL~Ldei~~L~~--------------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l--~-~~~~~~~f~ 532 (686)
T PRK15429 470 DKSSLFLDEVGDMPL--------------ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDL--K-KMVADREFR 532 (686)
T ss_pred CCCeEEEechhhCCH--------------HHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCH--H-HHHHcCccc
Confidence 357899999998731 222233333321 11 123577888887542 1 222233444
Q ss_pred e-------EEecCCCCHHHHHH----HHHhhcCC-------C---CC---HHHHHhCCCCCCHHHHHHHHHHHHHHH
Q 030960 84 R-------KIEFPLPDRRQKRL----VFQMNLSD-------E---VD---LEDYVSRPDKISAAEIAAICQEAGMHA 136 (168)
Q Consensus 84 ~-------~i~~~~P~~~~R~~----il~~~l~~-------~---~~---~~~la~~t~g~s~~di~~l~~~a~~~a 136 (168)
. .+.+..|...+|.+ ++++++.. . +. +..|..+.==-..++|+++++.|+..+
T Consensus 533 ~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 533 SDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 3 34566666666653 34444331 1 11 122222211124588888888887643
No 258
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=73.93 E-value=5 Score=27.62 Aligned_cols=14 Identities=7% Similarity=0.503 Sum_probs=11.8
Q ss_pred CCeEEEEccccccc
Q 030960 13 APAIIFIDEVDAIA 26 (168)
Q Consensus 13 ~p~ii~iDe~D~l~ 26 (168)
.+..|+|+|+|.+-
T Consensus 69 ~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 69 KGGTLYLKNIDRLS 82 (138)
T ss_dssp TTSEEEEECGCCS-
T ss_pred CCCEEEECChHHCC
Confidence 67899999999884
No 259
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=73.88 E-value=2.3 Score=25.55 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=16.4
Q ss_pred ccCHHHHHHHHHhhcCCC
Q 030960 143 VILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 143 ~i~~~d~~~al~~~~p~~ 160 (168)
+|+.+||+.||++++|+-
T Consensus 29 ~it~~DF~~Al~~~kpSV 46 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSV 46 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 699999999999999975
No 260
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=73.82 E-value=11 Score=29.41 Aligned_cols=56 Identities=25% Similarity=0.369 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 4 ~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
-++++|-.+.|-++++||= -.+-+...+..+-.++..+ ... +..|++.|.+++.+.
T Consensus 148 V~lARAL~~~p~lllLDEP----------~~gvD~~~~~~i~~lL~~l---~~e-g~tIl~vtHDL~~v~ 203 (254)
T COG1121 148 VLLARALAQNPDLLLLDEP----------FTGVDVAGQKEIYDLLKEL---RQE-GKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHHHhccCCCEEEecCC----------cccCCHHHHHHHHHHHHHH---HHC-CCEEEEEeCCcHHhH
Confidence 4567777888999999992 2233333344555555555 455 777888888777554
No 261
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=73.77 E-value=8 Score=28.63 Aligned_cols=64 Identities=22% Similarity=0.366 Sum_probs=39.0
Q ss_pred HcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCC
Q 030960 11 ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 90 (168)
Q Consensus 11 ~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~ 90 (168)
+..|.|+++||+-+-+.. ...+-++.++-.+- ...+|.|++.|.+++. -+| -+++.|.+.+
T Consensus 149 q~~P~ILLLDE~TsALD~----------~nkr~ie~mi~~~v---~~q~vAv~WiTHd~dq----a~r--ha~k~itl~~ 209 (223)
T COG4619 149 QFMPKILLLDEITSALDE----------SNKRNIEEMIHRYV---REQNVAVLWITHDKDQ----AIR--HADKVITLQP 209 (223)
T ss_pred hcCCceEEecCchhhcCh----------hhHHHHHHHHHHHh---hhhceEEEEEecChHH----Hhh--hhheEEEecc
Confidence 445999999998765421 11244444443332 2457889999987764 234 6777777755
Q ss_pred CCH
Q 030960 91 PDR 93 (168)
Q Consensus 91 P~~ 93 (168)
-..
T Consensus 210 G~~ 212 (223)
T COG4619 210 GHA 212 (223)
T ss_pred Ccc
Confidence 333
No 262
>PF04465 DUF499: Protein of unknown function (DUF499); InterPro: IPR007555 This is a family of uncharacterised hypothetical prokaryotic proteins.
Probab=73.39 E-value=9.2 Score=35.65 Aligned_cols=23 Identities=35% Similarity=0.626 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCeEEEEccccccccc
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATA 28 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~ 28 (168)
|+++|. ..||+|+|||+=..+.+
T Consensus 92 L~eLl~----~~P~LILiDEl~~Y~~~ 114 (1035)
T PF04465_consen 92 LRELLG----GRPVLILIDELVAYARQ 114 (1035)
T ss_pred HHHHhC----CCCEEEEeecHHHHHHH
Confidence 455554 35999999999888763
No 263
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=72.31 E-value=34 Score=27.28 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=58.9
Q ss_pred HHHHHHHHc---CCeEEEEccccccccccc---CCCCCcchHHHHHHHHHHHhccCCCC-CCCeEE--EEecCC---CC-
Q 030960 4 DVFRLAKEN---APAIIFIDEVDAIATARF---DAQTGADREVQRILMELLNQMDGFDQ-TVNVKV--IMATNR---AD- 70 (168)
Q Consensus 4 ~iF~~a~~~---~p~ii~iDe~D~l~~~~~---~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~v~v--i~ttn~---~~- 70 (168)
.+++..+.+ -|.++-+|++..++.... .....-....-.+...|+..+.+-.. .++.+| +++|.. +.
T Consensus 144 ~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~ 223 (309)
T PF10236_consen 144 ALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKS 223 (309)
T ss_pred HHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCC
Confidence 344444433 388888999999997632 12223333444777777777554332 234443 554443 22
Q ss_pred -CCCccccCCCC------cc-------------eEEecCCCCHHHHHHHHHhhcCC
Q 030960 71 -TLDPALLRPGR------LD-------------RKIEFPLPDRRQKRLVFQMNLSD 106 (168)
Q Consensus 71 -~ld~al~r~gr------f~-------------~~i~~~~P~~~~R~~il~~~l~~ 106 (168)
.++.++..... |. ..++++.-+.+|-..+++.|...
T Consensus 224 ~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~ 279 (309)
T PF10236_consen 224 PTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADS 279 (309)
T ss_pred ccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 45555553211 11 26788888888888888877664
No 264
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=72.05 E-value=9.8 Score=30.05 Aligned_cols=56 Identities=25% Similarity=0.456 Sum_probs=36.8
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCc
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP 74 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~ 74 (168)
+..|-...|.++++||= .++-++.....+..++..+ ....+..|+.+|..++.+..
T Consensus 147 ia~aL~~~P~lliLDEP----------t~GLDp~~~~~~~~~l~~l---~~~g~~tvlissH~l~e~~~ 202 (293)
T COG1131 147 IALALLHDPELLILDEP----------TSGLDPESRREIWELLREL---AKEGGVTILLSTHILEEAEE 202 (293)
T ss_pred HHHHHhcCCCEEEECCC----------CcCCCHHHHHHHHHHHHHH---HhCCCcEEEEeCCcHHHHHH
Confidence 44555677999999993 2344454445555555555 34445779999998887654
No 265
>PRK11823 DNA repair protein RadA; Provisional
Probab=71.95 E-value=24 Score=29.73 Aligned_cols=28 Identities=14% Similarity=0.464 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccc
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATAR 29 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~ 29 (168)
+..+++..+...|.+|+||.+-.+....
T Consensus 145 l~~i~~~i~~~~~~lVVIDSIq~l~~~~ 172 (446)
T PRK11823 145 LEAILATIEEEKPDLVVIDSIQTMYSPE 172 (446)
T ss_pred HHHHHHHHHhhCCCEEEEechhhhcccc
Confidence 4567777888899999999999987543
No 266
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=71.88 E-value=10 Score=24.27 Aligned_cols=37 Identities=8% Similarity=0.048 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 121 SAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 121 s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
.-.-++.++.+|...+-..+.+.|+.+|+.-|++++-
T Consensus 43 l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g 79 (85)
T cd00076 43 LKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 79 (85)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCC
Confidence 3445677788888888888899999999999998764
No 267
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=71.81 E-value=4.8 Score=30.99 Aligned_cols=57 Identities=18% Similarity=0.363 Sum_probs=30.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEec
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMAT 66 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~tt 66 (168)
+-..++...|.+|+||.+-.+...... ... ....+..++..|..+.+..++.++.++
T Consensus 132 i~~~~~~~~~~~vvID~l~~l~~~~~~--~~~---~~~~~~~~~~~L~~la~~~~vtvll~s 188 (271)
T cd01122 132 VRYMAVSHGIQHIIIDNLSIMVSDERA--SGD---ERKALDEIMTKLRGFATEHGIHITLVS 188 (271)
T ss_pred HHHHHhcCCceEEEECCHHHHhccCCC--chh---HHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 334455678999999999988643211 011 113344455555444444455455444
No 268
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=71.58 E-value=18 Score=30.21 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 121 SAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 121 s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
..++|+++++.++..+ ....|+.+|+...+
T Consensus 356 Nv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 356 NVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred hHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 4588888888776543 23356666664433
No 269
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=71.56 E-value=14 Score=27.39 Aligned_cols=55 Identities=18% Similarity=0.390 Sum_probs=31.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.|+++||--+ +-+......+..++..+. ...+..+|.+|++++.+
T Consensus 151 ~laral~~~p~illlDEPt~----------~LD~~~~~~l~~~l~~~~---~~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTG----------NLDNNNAKIIFDLMLELN---RELNTSFLVVTHDLELA 205 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCC----------cCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 34555567799999999543 223333344444444442 22234577777776544
No 270
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=71.18 E-value=13 Score=26.57 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC
Q 030960 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (168)
..+...+....|.+|+||++-.+... ........+..++..+.. . ++.+|.+++...
T Consensus 85 ~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~~---~-g~tvi~v~~~~~ 141 (187)
T cd01124 85 QRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALKR---F-GVTTLLTSEQSG 141 (187)
T ss_pred HHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHHH---C-CCEEEEEecccc
Confidence 44555666778999999999987642 111122333445444432 2 455666665544
No 271
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=71.07 E-value=12 Score=22.94 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 123 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 123 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
.-+.+++..|...|-.++...+..+|+.-++++.-
T Consensus 34 ~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r~~ 68 (72)
T cd07981 34 DFVDDVVEDACRLAKHRKSDTLEVKDVQLHLERNW 68 (72)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhc
Confidence 34677888899999999999999999999998754
No 272
>PRK08116 hypothetical protein; Validated
Probab=71.06 E-value=3.6 Score=32.10 Aligned_cols=66 Identities=14% Similarity=0.202 Sum_probs=32.9
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCC-CC----CCccccCCCCc---ce
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA-DT----LDPALLRPGRL---DR 84 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~-~~----ld~al~r~grf---~~ 84 (168)
...+|+|||+...- ... .....+...++..... +..+|.|||.+ +. ++..+.. |+ ..
T Consensus 178 ~~dlLviDDlg~e~--------~t~----~~~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~ 242 (268)
T PRK08116 178 NADLLILDDLGAER--------DTE----WAREKVYNIIDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCT 242 (268)
T ss_pred CCCEEEEecccCCC--------CCH----HHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCE
Confidence 46799999985421 111 1122333333322122 23477777764 33 3555665 63 34
Q ss_pred EEecCCCCH
Q 030960 85 KIEFPLPDR 93 (168)
Q Consensus 85 ~i~~~~P~~ 93 (168)
.+.+.-|+.
T Consensus 243 ~v~~~g~d~ 251 (268)
T PRK08116 243 PVENEGKSY 251 (268)
T ss_pred EEEeeCcCh
Confidence 466666664
No 273
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=71.00 E-value=6.9 Score=35.03 Aligned_cols=66 Identities=23% Similarity=0.301 Sum_probs=40.3
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCc-----cccCCCCcceEE
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP-----ALLRPGRLDRKI 86 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~-----al~r~grf~~~i 86 (168)
..|.+++|||+..++... .....+..++..+ .+. +..++.+|.++.++.. +++. -.+..|
T Consensus 628 ~~~~~i~iDEa~~ll~~~---------~~~~~i~~~~r~~---RK~-~~~~~~~TQ~~~d~~~~~~~~~il~--n~~~ki 692 (785)
T TIGR00929 628 GRPFLIIIDEAWQYLGNP---------VFAAKIRDWLKTL---RKA-NGIVVLATQSINDALGSRIADSILE--QCATKI 692 (785)
T ss_pred CCCeEEEEechhhhcCCH---------HHHHHHHHHHHHH---HHc-CCEEEEEeCCHHHHhcCchHHHHHH--hCCEEE
Confidence 469999999999987422 2234455555544 233 5567788888876643 2233 456666
Q ss_pred ecCCCC
Q 030960 87 EFPLPD 92 (168)
Q Consensus 87 ~~~~P~ 92 (168)
.++.|.
T Consensus 693 ~l~~~~ 698 (785)
T TIGR00929 693 FLPNPE 698 (785)
T ss_pred EcCCCC
Confidence 666553
No 274
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=70.65 E-value=15 Score=23.91 Aligned_cols=39 Identities=15% Similarity=0.012 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 116 RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 116 ~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
...++|++-...+++-|...|--.+...|+.+|+.+|+.
T Consensus 56 ~~~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~ 94 (96)
T PF13335_consen 56 EKLNLSARGYHRILRVARTIADLEGSERITREHIAEALS 94 (96)
T ss_pred HHcCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHh
Confidence 356899999999999999999999999999999999984
No 275
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=70.29 E-value=16 Score=31.44 Aligned_cols=31 Identities=6% Similarity=0.135 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 030960 121 SAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151 (168)
Q Consensus 121 s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 151 (168)
..++|++++.+++..+-......|+.+++..
T Consensus 435 NvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 435 NVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred hHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 4588889888887654322234577777643
No 276
>PTZ00015 histone H4; Provisional
Probab=69.61 E-value=12 Score=24.91 Aligned_cols=38 Identities=8% Similarity=0.063 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcC
Q 030960 121 SAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158 (168)
Q Consensus 121 s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 158 (168)
.-.-++.++++|...+-..+.+.|+.+|+.-|++.+-.
T Consensus 60 le~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~ 97 (102)
T PTZ00015 60 LKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKRQGR 97 (102)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC
Confidence 34456778888888888888999999999999987643
No 277
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=69.44 E-value=5.5 Score=34.43 Aligned_cols=42 Identities=24% Similarity=0.407 Sum_probs=27.4
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (168)
.| .++|||+|. +-++.....+...|..+.. ... |++.|..|.
T Consensus 454 ~p-tlIFDEVD~----------GIsG~~A~aVg~~L~~Ls~---~~Q--Vl~VTHlPQ 495 (557)
T COG0497 454 TP-TLIFDEVDT----------GISGRVAQAVGKKLRRLSE---HHQ--VLCVTHLPQ 495 (557)
T ss_pred CC-eEEEecccC----------CCChHHHHHHHHHHHHHhc---Cce--EEEEecHHH
Confidence 46 889999996 3444455777777777754 223 566666554
No 278
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=69.14 E-value=11 Score=26.77 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=32.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+- -+......+..++..+. .. +..+|.+|++++.+.
T Consensus 92 ~laral~~~p~illlDEP~~~----------LD~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~~~ 146 (163)
T cd03216 92 EIARALARNARLLILDEPTAA----------LTPAEVERLFKVIRRLR---AQ-GVAVIFISHRLDEVF 146 (163)
T ss_pred HHHHHHhcCCCEEEEECCCcC----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 455566778999999996532 22333344555555442 22 445677777766544
No 279
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=68.62 E-value=11 Score=28.29 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEe
Q 030960 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMA 65 (168)
Q Consensus 4 ~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~t 65 (168)
.....|-+.+|.+++|||=-+ .-++ .++.+.|.-|..+....+..|+.|
T Consensus 161 ~aIARaLameP~vmLFDEPTS----------ALDP---ElVgEVLkv~~~LAeEgrTMv~VT 209 (256)
T COG4598 161 VAIARALAMEPEVMLFDEPTS----------ALDP---ELVGEVLKVMQDLAEEGRTMVVVT 209 (256)
T ss_pred HHHHHHHhcCCceEeecCCcc----------cCCH---HHHHHHHHHHHHHHHhCCeEEEEe
Confidence 345667788899999999433 2223 667777777777766666666665
No 280
>PLN00035 histone H4; Provisional
Probab=68.43 E-value=13 Score=24.76 Aligned_cols=36 Identities=8% Similarity=0.064 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcC
Q 030960 123 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158 (168)
Q Consensus 123 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 158 (168)
.-++.++++|...+-..+.+.|+.+|+.-|++.+-.
T Consensus 61 ~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~g~ 96 (103)
T PLN00035 61 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96 (103)
T ss_pred HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHcCC
Confidence 456677788888888888999999999999987654
No 281
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=67.99 E-value=12 Score=27.70 Aligned_cols=55 Identities=25% Similarity=0.408 Sum_probs=31.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+- -+......+..++..+. ...+..||.+|++++.+
T Consensus 150 ~la~al~~~p~lllLDEP~~~----------LD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 204 (218)
T cd03255 150 AIARALANDPKIILADEPTGN----------LDSETGKEVMELLRELN---KEAGTTIVVVTHDPELA 204 (218)
T ss_pred HHHHHHccCCCEEEEcCCccc----------CCHHHHHHHHHHHHHHH---HhcCCeEEEEECCHHHH
Confidence 345555667999999995432 23333344444554442 22245678888876544
No 282
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=67.90 E-value=26 Score=25.34 Aligned_cols=52 Identities=21% Similarity=0.409 Sum_probs=29.4
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (168)
.+..|-...|.++++||--+ +-+......+..++..+. +. +..+|.+|++++
T Consensus 137 ~laral~~~p~llllDEPt~----------~LD~~~~~~~~~~l~~~~---~~-~~tili~sH~~~ 188 (190)
T TIGR01166 137 AIAGAVAMRPDVLLLDEPTA----------GLDPAGREQMLAILRRLR---AE-GMTVVISTHDVD 188 (190)
T ss_pred HHHHHHhcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHHH---Hc-CCEEEEEeeccc
Confidence 34555567799999999543 223333344444444442 22 445677776654
No 283
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=67.81 E-value=28 Score=25.32 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=33.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcc
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPA 75 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~a 75 (168)
+..|-...|.++++||--+=+ +......+..++.... . .+..+|.+|++++.+..+
T Consensus 134 la~al~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~~---~-~~~tiii~sh~~~~i~~~ 189 (195)
T PRK13541 134 IARLIACQSDLWLLDEVETNL----------SKENRDLLNNLIVMKA---N-SGGIVLLSSHLESSIKSA 189 (195)
T ss_pred HHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---h-CCCEEEEEeCCccccchh
Confidence 344556679999999966432 2222344444444332 1 245678888888877653
No 284
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=67.66 E-value=13 Score=26.34 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=27.2
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.|.++++||...=.. ......+...+..... + +..+|.+|.+++...
T Consensus 99 ~~~llllDEp~~gld---------~~~~~~l~~~l~~~~~---~--~~~vii~TH~~~~~~ 145 (162)
T cd03227 99 PRPLYILDEIDRGLD---------PRDGQALAEAILEHLV---K--GAQVIVITHLPELAE 145 (162)
T ss_pred CCCEEEEeCCCCCCC---------HHHHHHHHHHHHHHHh---c--CCEEEEEcCCHHHHH
Confidence 789999999875331 1122234444444433 1 345777888776544
No 285
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=67.46 E-value=10 Score=28.12 Aligned_cols=79 Identities=11% Similarity=0.142 Sum_probs=41.9
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCC-------CCcceE
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRP-------GRLDRK 85 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~-------grf~~~ 85 (168)
.+.+|+||-+-.++........ ......+.+..++..|..+....++.||.|+.........-.+| +..|.+
T Consensus 103 ~~~lvvIDsi~~l~~~~~~~~~-~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g~~~~~~~d~~ 181 (218)
T cd01394 103 KVDLVVVDSATALYRLELGDDD-TTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGGHTLEHWSKVI 181 (218)
T ss_pred CCcEEEEechHHhhhHHhcCcc-chHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCCcchhcceeEE
Confidence 4899999999998632211111 11122233444444444444556777887766543333211122 246777
Q ss_pred EecCCCC
Q 030960 86 IEFPLPD 92 (168)
Q Consensus 86 i~~~~P~ 92 (168)
|.+....
T Consensus 182 i~l~~~~ 188 (218)
T cd01394 182 LRLEKLR 188 (218)
T ss_pred EEEEEcC
Confidence 7777655
No 286
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=67.41 E-value=19 Score=26.72 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=34.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCc
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP 74 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~ 74 (168)
.+..|-...|.++++||--+- -+......+..++..+. +. +..+|.+|.+++.++.
T Consensus 147 ~laral~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~~~ 202 (214)
T PRK13543 147 ALARLWLSPAPLWLLDEPYAN----------LDLEGITLVNRMISAHL---RG-GGAALVTTHGAYAAPP 202 (214)
T ss_pred HHHHHHhcCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHH---hC-CCEEEEEecChhhhhh
Confidence 345555667999999996532 23333455555555542 22 3357778888777664
No 287
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=66.86 E-value=44 Score=27.18 Aligned_cols=70 Identities=21% Similarity=0.289 Sum_probs=44.3
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
.+-.|++||+|....+. -+.+-..++.+ +.++-++..+|++..+-|++.+ ||.+ +.+.+.+
T Consensus 131 ~fKlvILDEADaMT~~A--------------QnALRRviek~--t~n~rF~ii~n~~~ki~pa~qs--Rctr-frf~pl~ 191 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRDA--------------QNALRRVIEKY--TANTRFATISNPPQKIHPAQQS--RCTR-FRFAPLT 191 (360)
T ss_pred ceeEEEecchhHhhHHH--------------HHHHHHHHHHh--ccceEEEEeccChhhcCchhhc--cccc-CCCCCCC
Confidence 57899999999875322 12222334432 3355566889999999999998 7753 4555555
Q ss_pred HHHHHHHHH
Q 030960 93 RRQKRLVFQ 101 (168)
Q Consensus 93 ~~~R~~il~ 101 (168)
.++-...+.
T Consensus 192 ~~~~~~r~s 200 (360)
T KOG0990|consen 192 MAQQTERQS 200 (360)
T ss_pred hhhhhhHHH
Confidence 544444444
No 288
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=66.81 E-value=22 Score=31.72 Aligned_cols=43 Identities=23% Similarity=0.225 Sum_probs=37.3
Q ss_pred hCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 115 SRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 115 ~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
..+-..|.++|+++++-|-..|-.+-+..++.+|..+|++-+.
T Consensus 551 ~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 551 KRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVD 593 (682)
T ss_pred cCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHH
Confidence 3445589999999999999999889999999999999998654
No 289
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=66.65 E-value=27 Score=25.51 Aligned_cols=56 Identities=9% Similarity=0.081 Sum_probs=33.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCc
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP 74 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~ 74 (168)
.+..|-...|.++++||--.- -+......+..++..+. .. +..+|.+|+++..++.
T Consensus 137 ~laral~~~p~~lilDEP~~~----------LD~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 137 ALLRLWMSKAKLWLLDEPLVA----------LDELSLLTIITKIQEHR---AK-GGAVLLTSHQDLPLNK 192 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCcc----------cCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCchhccc
Confidence 344555677999999995532 23333344444444442 22 4457778887777663
No 290
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=66.40 E-value=22 Score=27.53 Aligned_cols=70 Identities=27% Similarity=0.467 Sum_probs=37.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHH-HHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcccc------
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREV-QRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL------ 77 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~-~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~------ 77 (168)
.+..|-...|-|+++||==.- -+.-. ..+-..++..+. ..+..|+..|.+ +++|+.
T Consensus 140 aiARAL~~~P~lLLlDEPFgA----------LDalTR~~lq~~l~~lw~----~~~~TvllVTHd---i~EAv~LsdRiv 202 (248)
T COG1116 140 AIARALATRPKLLLLDEPFGA----------LDALTREELQDELLRLWE----ETRKTVLLVTHD---VDEAVYLADRVV 202 (248)
T ss_pred HHHHHHhcCCCEEEEcCCcch----------hhHHHHHHHHHHHHHHHH----hhCCEEEEEeCC---HHHHHhhhCEEE
Confidence 456666778999999993211 11111 133333444443 333445555554 334432
Q ss_pred ----CCCCcceEEecCCC
Q 030960 78 ----RPGRLDRKIEFPLP 91 (168)
Q Consensus 78 ----r~grf~~~i~~~~P 91 (168)
+||+....+.+++|
T Consensus 203 vl~~~P~~i~~~~~i~l~ 220 (248)
T COG1116 203 VLSNRPGRIGEELEIDLP 220 (248)
T ss_pred EecCCCcceeeEEecCCC
Confidence 66777777777766
No 291
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=65.99 E-value=13 Score=28.23 Aligned_cols=56 Identities=21% Similarity=0.327 Sum_probs=33.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+ +-+......+..++..+ .+..+..||.+|++++.+.
T Consensus 163 ~la~al~~~p~llllDEPt~----------~LD~~~~~~l~~~L~~~---~~~~~~tii~~sH~~~~~~ 218 (255)
T PRK11300 163 EIARCMVTQPEILMLDEPAA----------GLNPKETKELDELIAEL---RNEHNVTVLLIEHDMKLVM 218 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcc----------CCCHHHHHHHHHHHHHH---HhhcCCEEEEEeCCHHHHH
Confidence 34455567799999999553 22333334444454444 2233466888888877654
No 292
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=65.98 E-value=16 Score=27.52 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=32.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+ +-+......+..++..+ ....+..+|.+|++++.+
T Consensus 163 ~la~al~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~---~~~~~~tiiivsH~~~~~ 217 (236)
T cd03267 163 EIAAALLHEPEILFLDEPTI----------GLDVVAQENIRNFLKEY---NRERGTTVLLTSHYMKDI 217 (236)
T ss_pred HHHHHHhcCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHH---HhcCCCEEEEEecCHHHH
Confidence 35556677899999999553 23333334444444444 223244577788877654
No 293
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=65.55 E-value=15 Score=27.63 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=32.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.|+++||--+= -+......+..++..+ ....+..||.+|++++.+.
T Consensus 155 ~la~al~~~p~lllLDEPt~~----------LD~~~~~~l~~~l~~~---~~~~g~tvii~sH~~~~~~ 210 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTGN----------LDARNADSIFQLLGEL---NRLQGTAFLVVTHDLQLAK 210 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHH---HHhCCCEEEEEeCCHHHHH
Confidence 345555678999999995542 2222334444444444 2223456778888776544
No 294
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=65.28 E-value=14 Score=26.56 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=17.1
Q ss_pred HHHHHHHHHH-cCCeEEEEccccccccc
Q 030960 2 VRDVFRLAKE-NAPAIIFIDEVDAIATA 28 (168)
Q Consensus 2 l~~iF~~a~~-~~p~ii~iDe~D~l~~~ 28 (168)
++.+.+.++. ..|.+|+||.+..+...
T Consensus 129 ~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 129 LEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp HHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred HHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 3566777777 67999999999999865
No 295
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=65.19 E-value=20 Score=27.00 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=32.4
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.|+++||--+= -+......+..++..+ .+..+..+|.+|++++.+.
T Consensus 142 ~laral~~~p~llllDEP~~~----------LD~~~~~~l~~~l~~~---~~~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTVG----------LDPASRAAIVAHVRAL---CRDQGLSVLWATHLVDEIE 197 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccC----------CCHHHHHHHHHHHHHH---HHhCCCEEEEEecChhhHh
Confidence 455666778999999995542 2232334444444444 2222445777777777654
No 296
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=65.16 E-value=79 Score=26.53 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=24.1
Q ss_pred HcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC
Q 030960 11 ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF 54 (168)
Q Consensus 11 ~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 54 (168)
-++.-+|+|||++.+..-+.. ..-++..+.+++.+|..
T Consensus 237 Gy~GLlI~lDE~e~l~kl~~~------~~R~~~ye~lr~lidd~ 274 (416)
T PF10923_consen 237 GYKGLLILLDELENLYKLRND------QAREKNYEALRQLIDDI 274 (416)
T ss_pred CCCceEEEEechHHHHhcCCh------HHHHHHHHHHHHHHHHH
Confidence 345789999999999754411 11235556666666654
No 297
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=64.98 E-value=6.6 Score=29.22 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=34.8
Q ss_pred HcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC
Q 030960 11 ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (168)
Q Consensus 11 ~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (168)
...+.+|+||-+-.++....... .......+.+..++..|..+....++.||.++....
T Consensus 112 ~~~~~lvVIDsis~l~~~~~~~~-~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~~ 170 (226)
T cd01393 112 SGRVDLVVVDSVAALFRKEFIGR-GMLAERARLLSQALRKLLRLADKFNVAVVFTNQVRA 170 (226)
T ss_pred cCCeeEEEEcCcchhhhhhhcCC-chHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEee
Confidence 45789999999999875421111 111222345566666666655556777777654433
No 298
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=64.82 E-value=25 Score=25.77 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=32.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCc
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP 74 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~ 74 (168)
+..|-...|.++++||--.= -+......+..++..+. .. +..+|.+|++++.++.
T Consensus 140 la~al~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 140 LARLWLTRAPLWILDEPFTA----------IDKQGVARLEALLAQHA---EQ-GGMVILTTHQDLPVAS 194 (204)
T ss_pred HHHHHhcCCCEEEEeCCCcc----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEecChhhhcc
Confidence 44555667999999996532 22222344444444442 22 3457888888887774
No 299
>PRK09183 transposase/IS protein; Provisional
Probab=64.56 E-value=13 Score=28.78 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=11.4
Q ss_pred cCCeEEEEcccccc
Q 030960 12 NAPAIIFIDEVDAI 25 (168)
Q Consensus 12 ~~p~ii~iDe~D~l 25 (168)
..|.+++|||++..
T Consensus 163 ~~~dlLiiDdlg~~ 176 (259)
T PRK09183 163 MAPRLLIIDEIGYL 176 (259)
T ss_pred cCCCEEEEcccccC
Confidence 45789999999765
No 300
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=64.32 E-value=15 Score=27.63 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=31.3
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+..|-...|.|+++||--+- -+......+..++..+ ....+..||.+|++++.+.
T Consensus 155 la~al~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~~---~~~~~~tii~~tH~~~~~~ 209 (241)
T cd03256 155 IARALMQQPKLILADEPVAS----------LDPASSRQVMDLLKRI---NREEGITVIVSLHQVDLAR 209 (241)
T ss_pred HHHHHhcCCCEEEEeCcccc----------CCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 44555677999999995532 2233334444444443 2222445777887776544
No 301
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=64.23 E-value=8.8 Score=28.67 Aligned_cols=85 Identities=12% Similarity=0.225 Sum_probs=43.9
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCc-cccCCC------Ccce
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP-ALLRPG------RLDR 84 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~-al~r~g------rf~~ 84 (168)
..+.+|+||.+..++...-... .......+.+..++..|.++....++.+|.|+......+. .....| -.|.
T Consensus 106 ~~~~lvVIDsi~al~~~~~~~~-~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~~~~~~~~~~~~gg~~~~~~~d~ 184 (225)
T PRK09361 106 ENVGLIVLDSATSLYRLELEDE-EDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVYSDIDSDGLRPLGGHTLEHWSKT 184 (225)
T ss_pred hcccEEEEeCcHHHhHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccceecCCCCcccCCCcchhhhhccE
Confidence 5799999999999874321111 1111222344444444444444557777776554443332 111111 2345
Q ss_pred EEecCCCCHHHHH
Q 030960 85 KIEFPLPDRRQKR 97 (168)
Q Consensus 85 ~i~~~~P~~~~R~ 97 (168)
.+.+..+....|.
T Consensus 185 ii~l~~~~~~~r~ 197 (225)
T PRK09361 185 ILRLEKFRNGKRR 197 (225)
T ss_pred EEEEEEccCCeEE
Confidence 7777665555554
No 302
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=64.03 E-value=12 Score=27.48 Aligned_cols=56 Identities=14% Similarity=0.284 Sum_probs=31.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+-+ +......+..++..+ ....+..+|.+|++++.+.
T Consensus 138 ~ia~al~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~---~~~~~~tii~~sH~~~~~~ 193 (211)
T cd03298 138 ALARVLVRDKPVLLLDEPFAAL----------DPALRAEMLDLVLDL---HAETKMTVLMVTHQPEDAK 193 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHH---HHhcCCEEEEEecCHHHHH
Confidence 3445556679999999965432 222233344444443 2233455777888776554
No 303
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=64.02 E-value=13 Score=27.32 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=31.2
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--.- -+......+..++..+. ...+..||.+|++++.+
T Consensus 140 ~laral~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~~~---~~~~~tvi~~sH~~~~~ 194 (213)
T cd03301 140 ALGRAIVREPKVFLMDEPLSN----------LDAKLRVQMRAELKRLQ---QRLGTTTIYVTHDQVEA 194 (213)
T ss_pred HHHHHHhcCCCEEEEcCCccc----------CCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHH
Confidence 355566678999999995532 23333344444444442 22244577777766543
No 304
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=63.80 E-value=19 Score=26.59 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+++++.+....|.++++||.-.=. +......+...++..+. +. +..+|.+|.+++.+.
T Consensus 95 ~~iL~~~~~~~p~llllDEp~~gl---------D~~~~~~l~~~ll~~l~---~~-~~tiiivTH~~~~~~ 152 (199)
T cd03283 95 KEIVEKAKKGEPVLFLLDEIFKGT---------NSRERQAASAAVLKFLK---NK-NTIGIISTHDLELAD 152 (199)
T ss_pred HHHHHhccCCCCeEEEEecccCCC---------CHHHHHHHHHHHHHHHH---HC-CCEEEEEcCcHHHHH
Confidence 455555554579999999964211 11111233344455543 12 456888888776554
No 305
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=63.39 E-value=30 Score=25.34 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=32.4
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCc
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP 74 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~ 74 (168)
.+..|-...|.++++||--+-+ +......+..++..+. .. +..+|.+|+++..++.
T Consensus 135 ~laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-g~tiii~sH~~~~~~~ 190 (201)
T cd03231 135 ALARLLLSGRPLWILDEPTTAL----------DKAGVARFAEAMAGHC---AR-GGMVVLTTHQDLGLSE 190 (201)
T ss_pred HHHHHHhcCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHH---hC-CCEEEEEecCchhhhh
Confidence 3455556679999999965432 2222334444444332 22 3457778887776665
No 306
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=63.06 E-value=52 Score=27.45 Aligned_cols=109 Identities=20% Similarity=0.229 Sum_probs=55.6
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC-----CC----CCCCeEEEEecCCCCCCCccccC-----C
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-----FD----QTVNVKVIMATNRADTLDPALLR-----P 79 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~----~~~~v~vi~ttn~~~~ld~al~r-----~ 79 (168)
-..+|+||+..+=+ .....++..|+. +. ....|.+|++|+ .+++.+++. .
T Consensus 174 GGtLfLDEI~~LP~--------------~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~--~~l~~~~~~g~dl~~ 237 (403)
T COG1221 174 GGTLFLDEIHRLPP--------------EGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATT--EDLEEAVLAGADLTR 237 (403)
T ss_pred CCEEehhhhhhCCH--------------hHHHHHHHHHHcCceEecCCCCCcCCCceeeeccc--cCHHHHHHhhcchhh
Confidence 47899999987732 112223344432 21 123577888777 344444443 0
Q ss_pred CCcceEEecCCCCH--HHHHHHHHhhcC---------CCCCHHHHHhCCCCC----CHHHHHHHHHHHHHHHHH
Q 030960 80 GRLDRKIEFPLPDR--RQKRLVFQMNLS---------DEVDLEDYVSRPDKI----SAAEIAAICQEAGMHAVR 138 (168)
Q Consensus 80 grf~~~i~~~~P~~--~~R~~il~~~l~---------~~~~~~~la~~t~g~----s~~di~~l~~~a~~~a~~ 138 (168)
-|+...|++|+... +++..+.++++. ...+..+.....-.| .-++|++++..++.++..
T Consensus 238 rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 238 RLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred hhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhcc
Confidence 14445555544422 333344444443 111112222222222 568999999999888753
No 307
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=62.40 E-value=20 Score=27.11 Aligned_cols=50 Identities=12% Similarity=0.156 Sum_probs=27.3
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
..|+++++||+-.=. +......+...++..+.. ..+..+|.+|.+.+-..
T Consensus 109 ~~~sLvllDE~~~gT---------~~~d~~~i~~~il~~l~~---~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 109 TSRSLVILDELGRGT---------STHDGIAIAYATLHYLLE---EKKCLVLFVTHYPSLGE 158 (222)
T ss_pred CCCeEEEEccCCCCC---------ChhhHHHHHHHHHHHHHh---ccCCeEEEEcccHHHHH
Confidence 359999999976421 001111223344444432 23556788888877543
No 308
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=62.35 E-value=24 Score=31.78 Aligned_cols=76 Identities=14% Similarity=0.091 Sum_probs=46.6
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCc-----cccCCCCcceEE
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP-----ALLRPGRLDRKI 86 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~-----al~r~grf~~~i 86 (168)
..|.+++|||+..++.. .++.....+..+.... ...+..++.+|.++.++.. +++. -.+..+
T Consensus 636 ~~~~~~viDEaw~ll~~-------~~~~~~~~i~~~~r~~----RK~g~~~~~~TQ~~~D~~~~~~~~~il~--n~~~~i 702 (797)
T TIGR02746 636 KRRKICIIDEAWSLLDG-------ANPQAADFIETGYRRA----RKYGGAFITITQGIEDFYSSPEARAAYA--NSDWKI 702 (797)
T ss_pred CCceEEEEecHHHHhhc-------ccHHHHHHHHHHHHHH----hhcCceEEEEEecHHHhccCHHHHHHHh--ccccee
Confidence 45999999999999851 1122234444444333 3346668889999998864 3434 466777
Q ss_pred ecCCCCHHHHHHHHH
Q 030960 87 EFPLPDRRQKRLVFQ 101 (168)
Q Consensus 87 ~~~~P~~~~R~~il~ 101 (168)
.++.+. ++..++.+
T Consensus 703 ~L~~~~-~~~~~~~~ 716 (797)
T TIGR02746 703 ILRQSA-ESIAKLKA 716 (797)
T ss_pred eecCCH-HHHHHHHh
Confidence 777653 34444443
No 309
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=61.99 E-value=42 Score=26.14 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccC
Q 030960 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLR 78 (168)
Q Consensus 4 ~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r 78 (168)
-+|.+|--..|-++++||-=.- -+-......++.+-.... ..+.--++..|.+.+++++.+..
T Consensus 180 vLiaRALv~~P~LLiLDEP~~G---------LDl~~re~ll~~l~~~~~---~~~~~~ll~VtHh~eEi~~~~th 242 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQG---------LDLIAREQLLNRLEELAA---SPGAPALLFVTHHAEEIPPCFTH 242 (257)
T ss_pred HHHHHHHhcCCCEEEecCcccc---------CChHHHHHHHHHHHHHhc---CCCCceEEEEEcchhhcccccce
Confidence 4677788888999999993221 111111233333333332 23345577788999999987654
No 310
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=61.75 E-value=23 Score=23.05 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcCC
Q 030960 123 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 159 (168)
Q Consensus 123 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~ 159 (168)
.-+..+..+|...|...+++.|+.+|+.-|++.....
T Consensus 51 ~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~~~ 87 (91)
T COG2036 51 EYLEEIAEDAVELAEHAKRKTVKAEDIKLALKRLGRR 87 (91)
T ss_pred HHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHhccc
Confidence 4466677888889999999999999999999876543
No 311
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=61.69 E-value=18 Score=27.77 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=32.4
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.|+++||--+= -+......+..++..+. ...+..+|.+|++++.+
T Consensus 157 ~laral~~~p~lllLDEPt~~----------LD~~~~~~~~~~l~~l~---~~~~~tiii~sH~~~~i 211 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSA----------LDIAHQVDVLALVHRLS---QERGLTVIAVLHDINMA 211 (265)
T ss_pred HHHHHHhcCCCEEEEcCCccc----------CCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 455666778999999995542 23333344445555442 22234577777776654
No 312
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=61.49 E-value=28 Score=26.55 Aligned_cols=53 Identities=21% Similarity=0.379 Sum_probs=33.8
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
...|--+.|+|+++||- .++-+-...+.+..++.++. ..+..||.+|...+++
T Consensus 144 iARAlvh~P~i~vlDEP----------~sGLDi~~~r~~~dfi~q~k----~egr~viFSSH~m~Ev 196 (245)
T COG4555 144 IARALVHDPSILVLDEP----------TSGLDIRTRRKFHDFIKQLK----NEGRAVIFSSHIMQEV 196 (245)
T ss_pred HHHHHhcCCCeEEEcCC----------CCCccHHHHHHHHHHHHHhh----cCCcEEEEecccHHHH
Confidence 34555678999999993 23444445577777777663 3345577777765544
No 313
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=61.18 E-value=18 Score=26.82 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=31.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+ +-+......+..++..+ ....+..+|.+|++++.+
T Consensus 141 ~la~al~~~p~lllLDEPt~----------~LD~~~~~~~~~~l~~~---~~~~~~tiii~sH~~~~~ 195 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFS----------ALDALTREQLQEELLDI---WRETGKTVLLVTHDIDEA 195 (220)
T ss_pred HHHHHHHcCCCEEEECCCCC----------CCCHHHHHHHHHHHHHH---HHHcCCEEEEEecCHHHH
Confidence 34555566799999999543 23333334444444443 222234577777777644
No 314
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=61.10 E-value=13 Score=27.47 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=13.3
Q ss_pred HHHcCCeEEEEccccccc
Q 030960 9 AKENAPAIIFIDEVDAIA 26 (168)
Q Consensus 9 a~~~~p~ii~iDe~D~l~ 26 (168)
|-...|.++++||-..-+
T Consensus 135 al~~~p~illlDEP~~~L 152 (204)
T cd03240 135 TFGSNCGILALDEPTTNL 152 (204)
T ss_pred HhccCCCEEEEcCCcccc
Confidence 334679999999977543
No 315
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=60.99 E-value=31 Score=25.06 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=35.3
Q ss_pred HHHHHHHcC--CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCc
Q 030960 5 VFRLAKENA--PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRL 82 (168)
Q Consensus 5 iF~~a~~~~--p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf 82 (168)
.+..|-... |.++++||--.- -+......+..++..+ .+ .+..||.+|++++.+ + ..
T Consensus 97 ~laral~~~~~p~llLlDEPt~~----------LD~~~~~~l~~~l~~~---~~-~g~tvIivSH~~~~~-----~--~~ 155 (176)
T cd03238 97 KLASELFSEPPGTLFILDEPSTG----------LHQQDINQLLEVIKGL---ID-LGNTVILIEHNLDVL-----S--SA 155 (176)
T ss_pred HHHHHHhhCCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHH---Hh-CCCEEEEEeCCHHHH-----H--hC
Confidence 345555667 999999996542 2222233333344333 22 244577777776533 3 45
Q ss_pred ceEEecC
Q 030960 83 DRKIEFP 89 (168)
Q Consensus 83 ~~~i~~~ 89 (168)
|+.+.+.
T Consensus 156 d~i~~l~ 162 (176)
T cd03238 156 DWIIDFG 162 (176)
T ss_pred CEEEEEC
Confidence 6666663
No 316
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=60.93 E-value=16 Score=28.59 Aligned_cols=55 Identities=15% Similarity=0.235 Sum_probs=31.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+- -+......+..++..+. +..+..||.+|++++.+
T Consensus 160 ~laral~~~p~lLlLDEPt~~----------LD~~~~~~l~~~l~~~~---~~~~~tiiiisH~~~~~ 214 (289)
T PRK13645 160 ALAGIIAMDGNTLVLDEPTGG----------LDPKGEEDFINLFERLN---KEYKKRIIMVTHNMDQV 214 (289)
T ss_pred HHHHHHHhCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 345555677999999996543 22223344444444442 22245577788877654
No 317
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=60.88 E-value=19 Score=27.90 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=33.9
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 4 ~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
-.+..|-..+|.++++||--. +-+......+..++..+. ...+..||.+|++++.+.
T Consensus 146 l~laraL~~~p~llilDEPt~----------gLD~~~~~~l~~~l~~l~---~~~g~tvli~tH~~~~~~ 202 (277)
T PRK13652 146 VAIAGVIAMEPQVLVLDEPTA----------GLDPQGVKELIDFLNDLP---ETYGMTVIFSTHQLDLVP 202 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHHH
Confidence 345666677899999999543 223323344444444442 222456788888877654
No 318
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=60.88 E-value=15 Score=27.08 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=29.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
+..|-...|.++++||--+= -+......+..++..+ ....+..||.+|++++.+
T Consensus 141 la~al~~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~---~~~~~~tii~~sH~~~~~ 194 (213)
T cd03259 141 LARALAREPSLLLLDEPLSA----------LDAKLREELREELKEL---QRELGITTIYVTHDQEEA 194 (213)
T ss_pred HHHHHhcCCCEEEEcCCccc----------CCHHHHHHHHHHHHHH---HHHcCCEEEEEecCHHHH
Confidence 44555667999999995432 2232334444444443 222234577777776544
No 319
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=60.86 E-value=32 Score=25.74 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=31.4
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+-+ +......+..++..+. . +..+|.+|++++.+
T Consensus 148 ~laral~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~~---~--~~tiii~sH~~~~~ 200 (237)
T cd03252 148 AIARALIHNPRILIFDEATSAL----------DYESEHAIMRNMHDIC---A--GRTVIIIAHRLSTV 200 (237)
T ss_pred HHHHHHhhCCCEEEEeCCcccC----------CHHHHHHHHHHHHHhc---C--CCEEEEEeCCHHHH
Confidence 3455556789999999965432 2223344444444442 2 34577788877655
No 320
>PRK10263 DNA translocase FtsK; Provisional
Probab=60.85 E-value=10 Score=36.14 Aligned_cols=74 Identities=14% Similarity=0.390 Sum_probs=51.9
Q ss_pred eEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC--CCCccccCCCCcceEEecCCCC
Q 030960 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD--TLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 15 ~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~--~ld~al~r~grf~~~i~~~~P~ 92 (168)
-||+|||+..|+... .+. +..++..|-..-..-+|.+|.+|.+|+ .|...++. -|..+|-|..-+
T Consensus 1142 IVVIIDE~AdLm~~~-------~ke----vE~lI~rLAqkGRAaGIHLILATQRPsvDVItg~IKA--N~ptRIAfrVsS 1208 (1355)
T PRK10263 1142 IVVLVDEFADLMMTV-------GKK----VEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 1208 (1355)
T ss_pred EEEEEcChHHHHhhh-------hHH----HHHHHHHHHHHhhhcCeEEEEEecCcccccchHHHHh--hccceEEEEcCC
Confidence 589999998876321 111 223333443334556899999999997 56666666 788899999999
Q ss_pred HHHHHHHHH
Q 030960 93 RRQKRLVFQ 101 (168)
Q Consensus 93 ~~~R~~il~ 101 (168)
..+-..||.
T Consensus 1209 ~~DSrtILd 1217 (1355)
T PRK10263 1209 KIDSRTILD 1217 (1355)
T ss_pred HHHHHHhcC
Confidence 988888885
No 321
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=60.62 E-value=18 Score=26.89 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=31.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+- -+......+..++..+. ...+..||.+|++++.+
T Consensus 155 ~laral~~~p~lllLDEPt~~----------LD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 209 (228)
T cd03257 155 AIARALALNPKLLIADEPTSA----------LDVSVQAQILDLLKKLQ---EELGLTLLFITHDLGVV 209 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCC----------CCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHH
Confidence 344555677999999995542 22333344444444442 22244577787776644
No 322
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=60.60 E-value=18 Score=27.12 Aligned_cols=55 Identities=25% Similarity=0.248 Sum_probs=31.1
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+ +-+......+..++..+ .+..+..+|.+|++++.+
T Consensus 124 ~la~al~~~p~lllLDEPt~----------gLD~~~~~~l~~~l~~~---~~~~~~tii~~sH~~~~~ 178 (230)
T TIGR01184 124 AIARALSIRPKVLLLDEPFG----------ALDALTRGNLQEELMQI---WEEHRVTVLMVTHDVDEA 178 (230)
T ss_pred HHHHHHHcCCCEEEEcCCCc----------CCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 34555567899999999553 22333334444444443 222244577777776643
No 323
>PRK06526 transposase; Provisional
Probab=60.30 E-value=10 Score=29.38 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=11.9
Q ss_pred cCCeEEEEccccccc
Q 030960 12 NAPAIIFIDEVDAIA 26 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~ 26 (168)
..+.+|+|||++.+.
T Consensus 158 ~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 158 GRYPLLIVDEVGYIP 172 (254)
T ss_pred ccCCEEEEcccccCC
Confidence 347899999999763
No 324
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=60.24 E-value=30 Score=24.63 Aligned_cols=53 Identities=25% Similarity=0.422 Sum_probs=30.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+..|-...|.++++||--.- -+......+..++..+. + +..+|.+|+.++.+.
T Consensus 107 la~al~~~p~llllDEP~~g----------LD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~~ 159 (171)
T cd03228 107 IARALLRDPPILILDEATSA----------LDPETEALILEALRALA---K--GKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHhcCCCEEEEECCCcC----------CCHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHHH
Confidence 44555667999999995432 22222344444444442 2 255777888777654
No 325
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=60.22 E-value=6.3 Score=36.62 Aligned_cols=27 Identities=33% Similarity=0.619 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCCeEEEEccccccccc
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATA 28 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~ 28 (168)
|..+|..|+..+||||||-++|.-...
T Consensus 642 iv~i~~eaR~~~psi~~ip~~d~w~~~ 668 (1080)
T KOG0732|consen 642 IVHIFMEARKTTPSIVFIPNVDEWARV 668 (1080)
T ss_pred HHHHHHHHhccCCceeeccchhhhhhc
Confidence 567899999999999999999986543
No 326
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=60.19 E-value=15 Score=27.69 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCC
Q 030960 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRP 79 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~ 79 (168)
+.+++.| ..|++|+|||+-.=. .......+...+++.+.. ..+..+|.+|.+.+-.......|
T Consensus 101 ~~il~~~--~~~sLvLlDE~~~Gt---------~~~dg~~la~ail~~L~~---~~~~~~i~~TH~~el~~~~~~~~ 163 (218)
T cd03286 101 ANILRHA--TPDSLVILDELGRGT---------STHDGYAIAHAVLEYLVK---KVKCLTLFSTHYHSLCDEFHEHG 163 (218)
T ss_pred HHHHHhC--CCCeEEEEecccCCC---------CchHHHHHHHHHHHHHHH---hcCCcEEEEeccHHHHHHhhcCc
Confidence 3444444 569999999965311 111112333344444432 12456777888776555443333
No 327
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=59.93 E-value=18 Score=27.26 Aligned_cols=54 Identities=19% Similarity=0.332 Sum_probs=30.8
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
+..|-...|.++++||--+- -+......+..++..+. ...+..||.+|++++.+
T Consensus 147 la~al~~~p~llllDEP~~~----------LD~~~~~~l~~~l~~~~---~~~~~tvii~sH~~~~~ 200 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGA----------LDAKVRKELRRWLRRLH---DELHVTTVFVTHDQEEA 200 (239)
T ss_pred HHHHHhcCCCEEEEcCCccc----------CCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHH
Confidence 44555667999999995542 23333344444554442 22244577777776543
No 328
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=59.36 E-value=19 Score=27.04 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=30.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.|+++||--+- -+......+..++..+ ....+..||.+|.+++.+
T Consensus 135 ~laral~~~p~vllLDEPt~~----------LD~~~~~~l~~~l~~~---~~~~~~tiii~sH~~~~~ 189 (230)
T TIGR02770 135 MIALALLLEPPFLIADEPTTD----------LDVVNQARVLKLLREL---RQLFGTGILLITHDLGVV 189 (230)
T ss_pred HHHHHHhcCCCEEEEcCCccc----------cCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 344555667999999996532 2222234444444443 222244577777776654
No 329
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=59.27 E-value=22 Score=26.75 Aligned_cols=55 Identities=22% Similarity=0.351 Sum_probs=31.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+- -+......+..++..+. ...+..+|.+|++++.+
T Consensus 155 ~la~al~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~~~---~~~~~tiii~tH~~~~~ 209 (243)
T TIGR02315 155 AIARALAQQPDLILADEPIAS----------LDPKTSKQVMDYLKRIN---KEDGITVIINLHQVDLA 209 (243)
T ss_pred HHHHHHhcCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHH
Confidence 345555677999999996542 22233344444554442 22234577777776654
No 330
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=59.25 E-value=18 Score=27.59 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=31.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.|+++||--+-+ +......+..++..+ ....+..||.+|++++.+
T Consensus 150 ~laral~~~p~lLlLDEPt~~L----------D~~~~~~l~~~L~~~---~~~~g~til~~sH~~~~~ 204 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDL----------DVVAQARILDLLESI---VQKRALGMLLVTHDMGVV 204 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCccc----------CHHHHHHHHHHHHHH---HHhcCcEEEEEecCHHHH
Confidence 3455566789999999965432 222334444444443 222245577777776654
No 331
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=59.04 E-value=30 Score=25.44 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=29.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (168)
.+..|-...|.++++||--+ +-+......+..++..+. ......++|.+++..+
T Consensus 128 ~laral~~~p~llllDEPt~----------~LD~~~~~~~~~~l~~~~--~~~~~t~ii~~~h~~~ 181 (202)
T cd03233 128 SIAEALVSRASVLCWDNSTR----------GLDSSTALEILKCIRTMA--DVLKTTTFVSLYQASD 181 (202)
T ss_pred HHHHHHhhCCCEEEEcCCCc----------cCCHHHHHHHHHHHHHHH--HhCCCEEEEEEcCCHH
Confidence 34555566799999999443 223333344444554442 1223445666666543
No 332
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=58.91 E-value=25 Score=25.96 Aligned_cols=55 Identities=22% Similarity=0.417 Sum_probs=31.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+ +-+......+..++..+. +. +..||.+|++++.+.
T Consensus 148 ~laral~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~---~~-~~tii~vsH~~~~~~ 202 (216)
T TIGR00960 148 AIARAIVHKPPLLLADEPTG----------NLDPELSRDIMRLFEEFN---RR-GTTVLVATHDINLVE 202 (216)
T ss_pred HHHHHHhcCCCEEEEeCCCC----------cCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 34555567799999999543 223333344444544442 22 345777888766443
No 333
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=58.88 E-value=18 Score=27.02 Aligned_cols=55 Identities=18% Similarity=0.424 Sum_probs=31.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+ +-+......+..++..+ ....+..||.+|++++.+
T Consensus 150 ~la~al~~~p~lllLDEP~~----------~LD~~~~~~l~~~l~~~---~~~~~~tvii~sH~~~~~ 204 (233)
T cd03258 150 GIARALANNPKVLLCDEATS----------ALDPETTQSILALLRDI---NRELGLTIVLITHEMEVV 204 (233)
T ss_pred HHHHHHhcCCCEEEecCCCC----------cCCHHHHHHHHHHHHHH---HHHcCCEEEEEeCCHHHH
Confidence 34455566799999999543 23333334444444444 223244577777776654
No 334
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=58.75 E-value=20 Score=27.46 Aligned_cols=56 Identities=25% Similarity=0.308 Sum_probs=32.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.+|++||--+-+ +......+..++..+. ...+..||.+|++++.+.
T Consensus 162 ~laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~g~tvii~tH~~~~~~ 217 (262)
T PRK09984 162 AIARALMQQAKVILADEPIASL----------DPESARIVMDTLRDIN---QNDGITVVVTLHQVDYAL 217 (262)
T ss_pred HHHHHHhcCCCEEEecCccccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 4555667789999999965432 2223344444444442 222456777888776543
No 335
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=58.66 E-value=23 Score=26.46 Aligned_cols=56 Identities=11% Similarity=0.245 Sum_probs=32.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+ +-+......+..++..+. ...+..+|.+|.+++.+.
T Consensus 141 ~la~al~~~p~illlDEPt~----------~LD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~~ 196 (230)
T TIGR03410 141 AIARALVTRPKLLLLDEPTE----------GIQPSIIKDIGRVIRRLR---AEGGMAILLVEQYLDFAR 196 (230)
T ss_pred HHHHHHhcCCCEEEecCCcc----------cCCHHHHHHHHHHHHHHH---HcCCcEEEEEeCCHHHHH
Confidence 34555566899999999543 233333445555555542 222455777777766543
No 336
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=58.59 E-value=22 Score=27.25 Aligned_cols=55 Identities=25% Similarity=0.384 Sum_probs=32.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
++-+-..+|-++++||-=+ +-+....+.+..++..+ ....+..+|..|.+.+.+.
T Consensus 149 IA~vLa~~P~iliLDEPta----------~LD~~~~~~l~~~l~~L---~~~~~~tii~~tHd~~~~~ 203 (235)
T COG1122 149 IAGVLAMGPEILLLDEPTA----------GLDPKGRRELLELLKKL---KEEGGKTIIIVTHDLELVL 203 (235)
T ss_pred hhHHHHcCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHH---HhcCCCeEEEEeCcHHHHH
Confidence 4455677899999999332 33333345555555555 4444455677777666544
No 337
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=58.49 E-value=19 Score=26.54 Aligned_cols=56 Identities=23% Similarity=0.390 Sum_probs=31.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--. +-+......+..++..+. ...+..+|.+|++++.+.
T Consensus 141 ~la~al~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~~ 196 (214)
T cd03297 141 ALARALAAQPELLLLDEPFS----------ALDRALRLQLLPELKQIK---KNLNIPVIFVTHDLSEAE 196 (214)
T ss_pred HHHHHHhcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHHH---HHcCcEEEEEecCHHHHH
Confidence 34555567799999999543 223333344444444442 222345777777776553
No 338
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=58.32 E-value=24 Score=26.19 Aligned_cols=56 Identities=13% Similarity=0.316 Sum_probs=31.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+- -+......+..++..+. ...+..||.+|++++.+.
T Consensus 141 ~la~al~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~~~---~~~~~tvi~~tH~~~~~~ 196 (220)
T cd03265 141 EIARSLVHRPEVLFLDEPTIG----------LDPQTRAHVWEYIEKLK---EEFGMTILLTTHYMEEAE 196 (220)
T ss_pred HHHHHHhcCCCEEEEcCCccC----------CCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 455566778999999995532 22223344444444442 222345777777766543
No 339
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=58.22 E-value=20 Score=26.92 Aligned_cols=55 Identities=24% Similarity=0.382 Sum_probs=30.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.|+++||--+ +-+......+..++..+. ...+..||.+|++++.+
T Consensus 146 ~ia~al~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~---~~~~~tvi~vsH~~~~~ 200 (235)
T cd03261 146 ALARALALDPELLLYDEPTA----------GLDPIASGVIDDLIRSLK---KELGLTSIMVTHDLDTA 200 (235)
T ss_pred HHHHHHhcCCCEEEecCCcc----------cCCHHHHHHHHHHHHHHH---HhcCcEEEEEecCHHHH
Confidence 34555567799999999543 223333344444444442 22244577777776644
No 340
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=58.17 E-value=64 Score=25.08 Aligned_cols=108 Identities=16% Similarity=0.177 Sum_probs=59.4
Q ss_pred HHHHHHHhccCCCCCCCeEEEEecCC----CCCCCccccCCCCcceEEecCCCCHHHHHHHHHhhcCCCC------CHHH
Q 030960 43 ILMELLNQMDGFDQTVNVKVIMATNR----ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSDEV------DLED 112 (168)
Q Consensus 43 ~~~~ll~~l~~~~~~~~v~vi~ttn~----~~~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~~~~------~~~~ 112 (168)
+...+...+++..+++ .|.+||- ..++-+++.||.||.-.-.|.|+-.=.-.++++..-..+. ++..
T Consensus 110 iK~~lF~~l~~~ak~~---~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVir~~~TS~eTf~~l~~f~k 186 (298)
T KOG2304|consen 110 IKRKLFKDLDKIAKSS---TILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVIRTDDTSDETFNALVDFGK 186 (298)
T ss_pred HHHHHHHHHHhhcccc---eEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhhcCCCCCHHHHHHHHHHHH
Confidence 3344555666554432 2333332 4578899999999998777766655555566653333221 1111
Q ss_pred -H------HhCCCCCCHHH-HHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 113 -Y------VSRPDKISAAE-IAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 113 -l------a~~t~g~s~~d-i~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
+ ++-|+||-.-- |.-.+.+|. +...++. -+.+|++.|++--
T Consensus 187 ~~gKttVackDtpGFIVNRlLiPyl~ea~-r~yerGd--AskeDIDtaMklG 235 (298)
T KOG2304|consen 187 AVGKTTVACKDTPGFIVNRLLIPYLMEAI-RMYERGD--ASKEDIDTAMKLG 235 (298)
T ss_pred HhCCCceeecCCCchhhhHHHHHHHHHHH-HHHHhcC--CcHhhHHHHHhcc
Confidence 1 23457774433 333344443 3334443 7889999988753
No 341
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=58.08 E-value=27 Score=27.61 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=35.2
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-.+.|.++++||-- ++-+......+..++..+. .. +..||.+|++.+.+.
T Consensus 148 ~la~aL~~~P~lllLDEPt----------~gLD~~~~~~l~~~l~~l~---~~-g~till~sH~l~e~~ 202 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPT----------TGLDPQARHLMWERLRSLL---AR-GKTILLTTHFMEEAE 202 (306)
T ss_pred HHHHHHhCCCCEEEEeCCC----------cCCCHHHHHHHHHHHHHHH---hC-CCEEEEECCCHHHHH
Confidence 3556667789999999943 2334444455555555552 22 556888888887654
No 342
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=58.07 E-value=23 Score=25.89 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=31.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+ +-+......+..++..+. .. +..+|.+|++++.+
T Consensus 136 ~laral~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~---~~-~~tii~~sH~~~~~ 189 (205)
T cd03226 136 AIAAALLSGKDLLIFDEPTS----------GLDYKNMERVGELIRELA---AQ-GKAVIVITHDYEFL 189 (205)
T ss_pred HHHHHHHhCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 34455566799999999543 233333344455555442 22 44577777776654
No 343
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=58.05 E-value=52 Score=23.89 Aligned_cols=54 Identities=17% Similarity=0.111 Sum_probs=30.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+..|-...|.++++||--+=+ +......+..++..+. .. +..+|.+|+++..+.
T Consensus 138 la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 138 LARLWLSRAPLWILDEPTTAL----------DKAGVALLAGLLRAHL---AR-GGIVLLTTHQDLGLV 191 (198)
T ss_pred HHHHHhcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHH---hC-CCEEEEEEccccccc
Confidence 344556679999999965422 2223344444544442 22 335777777776544
No 344
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=57.94 E-value=33 Score=28.96 Aligned_cols=57 Identities=12% Similarity=0.254 Sum_probs=34.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCc
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP 74 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~ 74 (168)
.+..|-...|.++++||--+ +-+......+..++..+. ...+..||.+|++++.+..
T Consensus 411 ~la~al~~~p~lllLDEPt~----------gLD~~~~~~l~~~L~~l~---~~~~~tviivsHd~~~~~~ 467 (490)
T PRK10938 411 LIVRALVKHPTLLILDEPLQ----------GLDPLNRQLVRRFVDVLI---SEGETQLLFVSHHAEDAPA 467 (490)
T ss_pred HHHHHHhcCCCEEEEcCccc----------cCCHHHHHHHHHHHHHHH---hcCCcEEEEEecchhhhhh
Confidence 45556677899999999432 333333455555555553 2334447778887776653
No 345
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=57.84 E-value=8.5 Score=34.80 Aligned_cols=67 Identities=19% Similarity=0.252 Sum_probs=43.9
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCc-----cccCCCCcceEE
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP-----ALLRPGRLDRKI 86 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~-----al~r~grf~~~i 86 (168)
..|.+++|||+..++... .....+..++..+ .+ .+..++.+|.++.++-. +++. -.+..|
T Consensus 626 gr~~ii~iDEaw~~l~~~---------~~~~~i~~~~kt~---RK-~ng~~~~~TQs~~D~~~s~~~~~i~~--n~~t~I 690 (789)
T PRK13853 626 GRRFVMSCDEFRAYLLNP---------KFAAVVDKFLLTV---RK-NNGMLILATQQPEHVLESPLGASLVA--QCMTKI 690 (789)
T ss_pred CCcEEEEEechhHHhCCH---------HHHHHHHHHHHHH---HH-cCeEEEEecCCHHHHHcCchHHHHHH--hCCeEE
Confidence 469999999998887421 1224444454444 33 35667788888876654 3444 578889
Q ss_pred ecCCCCH
Q 030960 87 EFPLPDR 93 (168)
Q Consensus 87 ~~~~P~~ 93 (168)
.++.|..
T Consensus 691 ~Lpn~~a 697 (789)
T PRK13853 691 FYPSPTA 697 (789)
T ss_pred EcCCccc
Confidence 9988854
No 346
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=57.65 E-value=26 Score=25.13 Aligned_cols=55 Identities=24% Similarity=0.313 Sum_probs=31.0
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+..|-...|.++++||--.-+ +......+..++..+. ...+..+|.+|++++.+.
T Consensus 108 laral~~~p~llllDEP~~~L----------D~~~~~~~~~~l~~~~---~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 108 LARALAQEPPILLLDEPTSHL----------DIAHQIELLELLRRLA---RERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHhcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 445556779999999955322 2222344444444442 222345777777766543
No 347
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=57.60 E-value=25 Score=25.88 Aligned_cols=55 Identities=25% Similarity=0.418 Sum_probs=31.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+- -+......+..++..+. .. +..+|.+|++++.+.
T Consensus 146 ~laral~~~p~llllDEPt~~----------LD~~~~~~~~~~l~~~~---~~-~~tiiivtH~~~~~~ 200 (214)
T cd03292 146 AIARAIVNSPTILIADEPTGN----------LDPDTTWEIMNLLKKIN---KA-GTTVVVATHAKELVD 200 (214)
T ss_pred HHHHHHHcCCCEEEEeCCCCc----------CCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHH
Confidence 345555678999999996543 22333344444554442 22 345777777765543
No 348
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=57.48 E-value=21 Score=27.51 Aligned_cols=56 Identities=18% Similarity=0.335 Sum_probs=31.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+ +-+......+..++..+ .+..+..+|.+|++++.+.
T Consensus 153 ~laral~~~p~lllLDEPt~----------~LD~~~~~~l~~~l~~~---~~~~g~tiiivsH~~~~~~ 208 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFV----------GQDPITMGVLVKLISEL---NSALGVTCVVVSHDVPEVL 208 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCc----------cCCHHHHHHHHHHHHHH---HHhcCcEEEEEecCHHHHH
Confidence 34555566799999999543 22333334444454444 2232455777777765443
No 349
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=57.39 E-value=33 Score=24.51 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=31.2
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+-+ +......+..++..+. + +..+|.+|++++.++
T Consensus 108 ~laral~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~~ 161 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVGL----------DPITERQLLSLIFEVL---K--DKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHc---C--CCEEEEEecCHHHHH
Confidence 3455556789999999965432 2223344444444442 2 345667777776553
No 350
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=57.31 E-value=24 Score=27.15 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=32.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||-..- -+......+..++..+ .+..+..+|.+|++++.+.
T Consensus 153 ~laral~~~p~llllDEPt~g----------LD~~~~~~l~~~L~~l---~~~~~~tiii~tH~~~~~~ 208 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTW----------LDISHQIDLLELLSEL---NREKGYTLAAVLHDLNQAC 208 (265)
T ss_pred HHHHHHhcCCCEEEEeCcccc----------CCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 455566778999999996542 2222334444444444 2222455788888776543
No 351
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=57.31 E-value=24 Score=25.90 Aligned_cols=55 Identities=29% Similarity=0.405 Sum_probs=31.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+ +-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 144 ~laral~~~p~llllDEPt~----------~LD~~~~~~~~~~l~~~~---~~-~~tvi~~sH~~~~~~ 198 (211)
T cd03225 144 AIAGVLAMDPDILLLDEPTA----------GLDPAGRRELLELLKKLK---AE-GKTIIIVTHDLDLLL 198 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHH
Confidence 34455566799999999553 223333344444544442 22 455777777766543
No 352
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=57.29 E-value=22 Score=27.27 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=31.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+ +-+......+..++..+ ....+..||.+|.+++.+
T Consensus 138 ~laral~~~p~lllLDEPt~----------~LD~~~~~~l~~~L~~~---~~~~g~tviivsH~~~~~ 192 (255)
T PRK11248 138 GIARALAANPQLLLLDEPFG----------ALDAFTREQMQTLLLKL---WQETGKQVLLITHDIEEA 192 (255)
T ss_pred HHHHHHhcCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 34555567899999999543 23333334444444444 112244577777877654
No 353
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=57.16 E-value=24 Score=27.07 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=31.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+- -+......+..++..+ ....+..+|.+|.+++.+.
T Consensus 130 ~laral~~~p~lllLDEPt~~----------LD~~~~~~l~~~L~~~---~~~~g~tiiivsH~~~~i~ 185 (251)
T PRK09544 130 LLARALLNRPQLLVLDEPTQG----------VDVNGQVALYDLIDQL---RRELDCAVLMVSHDLHLVM 185 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCcC----------CCHHHHHHHHHHHHHH---HHhcCCEEEEEecCHHHHH
Confidence 455566778999999996542 2222234444444443 2222345777777776553
No 354
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=56.96 E-value=33 Score=26.17 Aligned_cols=57 Identities=21% Similarity=0.266 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
++.+++.+. +.++|+|||+-.= ........+...+++.+. ...+..+|.+|+..+-.
T Consensus 113 ~~~il~~~~--~~sLvliDE~g~g---------T~~~eg~ai~~aile~l~---~~~~~~~i~~TH~~~l~ 169 (235)
T PF00488_consen 113 LSSILRNAT--EKSLVLIDELGRG---------TNPEEGIAIAIAILEYLL---EKSGCFVIIATHFHELA 169 (235)
T ss_dssp HHHHHHH----TTEEEEEESTTTT---------SSHHHHHHHHHHHHHHHH---HTTT-EEEEEES-GGGG
T ss_pred HHhhhhhcc--cceeeecccccCC---------CChhHHHHHHHHHHHHHH---HhccccEEEEeccchhH
Confidence 345565554 4789999997531 222222345555665554 22355788898887643
No 355
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.85 E-value=25 Score=27.32 Aligned_cols=57 Identities=28% Similarity=0.487 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
|..+.+|-...|.+||+||=-+ +-++-....+..++..+. ..-...+|..|.+.+.+
T Consensus 153 RvaLARAialdPell~~DEPts----------GLDPI~a~~~~~LI~~L~---~~lg~T~i~VTHDl~s~ 209 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTS----------GLDPISAGVIDELIRELN---DALGLTVIMVTHDLDSL 209 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCC----------CCCcchHHHHHHHHHHHH---HhhCCEEEEEECChHHH
Confidence 3456777788899999999332 222222355555655553 23344566666655443
No 356
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=56.77 E-value=26 Score=27.31 Aligned_cols=55 Identities=22% Similarity=0.325 Sum_probs=32.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.+|++||--+= -+......+..++..+ .+..+..+|.+|++++.+
T Consensus 150 ~laral~~~p~lllLDEPt~g----------LD~~~~~~l~~~l~~l---~~~~~~tilivsH~~~~~ 204 (279)
T PRK13635 150 AIAGVLALQPDIIILDEATSM----------LDPRGRREVLETVRQL---KEQKGITVLSITHDLDEA 204 (279)
T ss_pred HHHHHHHcCCCEEEEeCCccc----------CCHHHHHHHHHHHHHH---HHcCCCEEEEEecCHHHH
Confidence 455666778999999995542 2332334444444444 333355677777776655
No 357
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=56.51 E-value=31 Score=25.77 Aligned_cols=64 Identities=17% Similarity=0.347 Sum_probs=35.1
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcce
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDR 84 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~ 84 (168)
.+..|-...|.++++||--.= -+......+..++..+. +..+..+|.+|.+++.+. ..|+
T Consensus 147 ~laral~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~~~---~~~~~tvii~sh~~~~~~-------~~d~ 206 (225)
T PRK10247 147 SLIRNLQFMPKVLLLDEITSA----------LDESNKHNVNEIIHRYV---REQNIAVLWVTHDKDEIN-------HADK 206 (225)
T ss_pred HHHHHHhcCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHH---HhcCCEEEEEECChHHHH-------hCCE
Confidence 455566778999999995432 22223344444444432 222344677777665442 2455
Q ss_pred EEec
Q 030960 85 KIEF 88 (168)
Q Consensus 85 ~i~~ 88 (168)
.+.+
T Consensus 207 i~~l 210 (225)
T PRK10247 207 VITL 210 (225)
T ss_pred EEEE
Confidence 5655
No 358
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=56.50 E-value=22 Score=25.64 Aligned_cols=54 Identities=15% Similarity=0.251 Sum_probs=31.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+..|-...|.++++||--+- -+......+..++..+. .. +..+|.+|++++.+.
T Consensus 115 la~al~~~p~llllDEP~~~----------LD~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~~~ 168 (182)
T cd03215 115 LARWLARDPRVLILDEPTRG----------VDVGAKAEIYRLIRELA---DA-GKAVLLISSELDELL 168 (182)
T ss_pred HHHHHccCCCEEEECCCCcC----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 44555667999999995532 23333345555555542 22 345777777665443
No 359
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=56.40 E-value=16 Score=33.63 Aligned_cols=87 Identities=20% Similarity=0.256 Sum_probs=52.4
Q ss_pred HHHHHHHHH-HcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC-----CCCcc
Q 030960 2 VRDVFRLAK-ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPA 75 (168)
Q Consensus 2 l~~iF~~a~-~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~a 75 (168)
++.+-..+. .....|++|||++.+.+...+ .+ .....+-+.-. ....++.+|+||..-. .=||+
T Consensus 268 lk~l~k~v~~~~~gvILfigelh~lvg~g~~--~~----~~d~~nlLkp~----L~rg~l~~IGatT~e~Y~k~iekdPa 337 (898)
T KOG1051|consen 268 LKELLKEVESGGGGVILFLGELHWLVGSGSN--YG----AIDAANLLKPL----LARGGLWCIGATTLETYRKCIEKDPA 337 (898)
T ss_pred HHHHHHHHhcCCCcEEEEecceeeeecCCCc--ch----HHHHHHhhHHH----HhcCCeEEEecccHHHHHHHHhhCcc
Confidence 345555555 445788889999999876533 11 11222222222 2333488999887432 45899
Q ss_pred ccCCCCcceEEecCCCCHHHHHHHHH
Q 030960 76 LLRPGRLDRKIEFPLPDRRQKRLVFQ 101 (168)
Q Consensus 76 l~r~grf~~~i~~~~P~~~~R~~il~ 101 (168)
+-| ||+. +.++.|+.+.-..|++
T Consensus 338 lEr--rw~l-~~v~~pS~~~~~~iL~ 360 (898)
T KOG1051|consen 338 LER--RWQL-VLVPIPSVENLSLILP 360 (898)
T ss_pred hhh--Ccce-eEeccCcccchhhhhh
Confidence 999 9975 4567777665444443
No 360
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=56.39 E-value=26 Score=26.13 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=32.2
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+ +-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 143 ~la~al~~~p~llllDEPt~----------~LD~~~~~~~~~~l~~~~---~~-~~tii~~sH~~~~~~ 197 (232)
T cd03218 143 EIARALATNPKFLLLDEPFA----------GVDPIAVQDIQKIIKILK---DR-GIGVLITDHNVRETL 197 (232)
T ss_pred HHHHHHhcCCCEEEecCCcc----------cCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 45555667799999999543 223333344555555543 22 345777887765443
No 361
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=56.39 E-value=27 Score=25.60 Aligned_cols=54 Identities=13% Similarity=0.302 Sum_probs=31.5
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+..|-...|.++++||--+ +-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 146 la~al~~~p~llllDEP~~----------~LD~~~~~~l~~~l~~~~---~~-~~tvi~~sh~~~~~~ 199 (213)
T cd03262 146 IARALAMNPKVMLFDEPTS----------ALDPELVGEVLDVMKDLA---EE-GMTMVVVTHEMGFAR 199 (213)
T ss_pred HHHHHhcCCCEEEEeCCcc----------CCCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHH
Confidence 4455566799999999553 233333345555555543 22 344777777776543
No 362
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=56.34 E-value=31 Score=24.55 Aligned_cols=55 Identities=18% Similarity=0.354 Sum_probs=31.4
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.|+++||--+-+ +......+..++..+. .. +..+|.+|++++.+.
T Consensus 105 ~laral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~---~~-g~tiii~th~~~~~~ 159 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSGL----------DPESRREFWELLRELK---KE-GKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEECCCHHHHH
Confidence 3555667789999999965432 2223344444444442 22 345777777665443
No 363
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=56.34 E-value=20 Score=27.03 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=31.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+= -+......+..++..+. ...+..||.+|++++.+
T Consensus 145 ~laral~~~p~llllDEPt~~----------LD~~~~~~l~~~L~~~~---~~~g~tvii~sH~~~~~ 199 (242)
T cd03295 145 GVARALAADPPLLLMDEPFGA----------LDPITRDQLQEEFKRLQ---QELGKTIVFVTHDIDEA 199 (242)
T ss_pred HHHHHHhcCCCEEEecCCccc----------CCHHHHHHHHHHHHHHH---HHcCCEEEEEecCHHHH
Confidence 345555677999999996532 22333344444444442 22244577788777654
No 364
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=56.15 E-value=23 Score=28.60 Aligned_cols=55 Identities=20% Similarity=0.461 Sum_probs=32.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.|+++||--+ +-+......+..++..+ ....+..+|.+|++++.+
T Consensus 150 ~lAraL~~~p~iLlLDEPts----------~LD~~~~~~l~~~L~~l---~~~~g~tiilvtH~~~~i 204 (343)
T PRK11153 150 AIARALASNPKVLLCDEATS----------ALDPATTRSILELLKDI---NRELGLTIVLITHEMDVV 204 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 34555667899999999543 22333334444444444 223345678888877654
No 365
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=56.08 E-value=23 Score=25.40 Aligned_cols=56 Identities=20% Similarity=0.354 Sum_probs=31.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+ +-+......+..++..+. +..+..+|.+|++++.++
T Consensus 110 ~la~al~~~p~llilDEP~~----------~LD~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 110 ALARALAMDPDVLLLDEPTS----------ALDPITRREVRALLKSLQ---AQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHCCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 35556677899999999543 223333344444554442 222345777777665543
No 366
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=56.05 E-value=30 Score=25.42 Aligned_cols=54 Identities=22% Similarity=0.370 Sum_probs=30.8
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+..|-...|.++++||--+ +-+......+..++..+. +. +..+|.+|++++.+.
T Consensus 143 la~al~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~---~~-~~tvi~~sH~~~~~~ 196 (213)
T cd03235 143 LARALVQDPDLLLLDEPFA----------GVDPKTQEDIYELLRELR---RE-GMTILVVTHDLGLVL 196 (213)
T ss_pred HHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHHHHH
Confidence 4455566799999999543 223333344444444442 22 445777777766543
No 367
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=56.05 E-value=34 Score=26.38 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=30.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+-+ +......+..++..+ ....+..+|.+|++++.+
T Consensus 152 ~laral~~~p~lllLDEP~~gL----------D~~~~~~l~~~l~~~---~~~~~~tiii~sH~~~~~ 206 (271)
T PRK13632 152 AIASVLALNPEIIIFDESTSML----------DPKGKREIKKIMVDL---RKTRKKTLISITHDMDEA 206 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHH---HHhcCcEEEEEEechhHH
Confidence 3455566789999999965322 222233344444443 222234577777776655
No 368
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=55.98 E-value=28 Score=25.52 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=30.8
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+..|-...|.++++||--+= -+......+..++..+. +. +..+|.+|++++.+.
T Consensus 137 la~al~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~~~---~~-~~tii~~tH~~~~~~ 190 (208)
T cd03268 137 IALALLGNPDLLILDEPTNG----------LDPDGIKELRELILSLR---DQ-GITVLISSHLLSEIQ 190 (208)
T ss_pred HHHHHhcCCCEEEECCCccc----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEcCCHHHHH
Confidence 44555667999999995532 22223344444444442 22 345777788776543
No 369
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=55.93 E-value=29 Score=25.81 Aligned_cols=55 Identities=22% Similarity=0.342 Sum_probs=33.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+ +-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 134 ~laral~~~p~llllDEP~~----------~LD~~~~~~l~~~L~~~~---~~-~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTN----------GLDPIGIQELRELIRSFP---EQ-GITVILSSHILSEVQ 188 (223)
T ss_pred HHHHHHhcCCCEEEECCCcc----------CCCHHHHHHHHHHHHHHH---HC-CCEEEEEcCCHHHHH
Confidence 34555567799999999553 233333344555555542 22 445788888777554
No 370
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=55.92 E-value=23 Score=27.29 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=31.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.|+++||--+-+ +......+..++..+ .+..+..||.+|++++.+.
T Consensus 159 ~laral~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~~---~~~~g~tviivsH~~~~~~ 214 (267)
T PRK15112 159 GLARALILRPKVIIADEALASL----------DMSMRSQLINLMLEL---QEKQGISYIYVTQHLGMMK 214 (267)
T ss_pred HHHHHHHhCCCEEEEcCCcccC----------CHHHHHHHHHHHHHH---HHHcCcEEEEEeCCHHHHH
Confidence 3445556779999999965432 222334444444444 2222445777777776543
No 371
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=55.79 E-value=27 Score=26.67 Aligned_cols=56 Identities=21% Similarity=0.317 Sum_probs=32.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.|+++||--+-+ +......+..++..+ ....+..+|.+|.+++.+.
T Consensus 161 ~laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~---~~~~~~tii~isH~~~~~~ 216 (258)
T PRK11701 161 QIARNLVTHPRLVFMDEPTGGL----------DVSVQARLLDLLRGL---VRELGLAVVIVTHDLAVAR 216 (258)
T ss_pred HHHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHH---HHhcCcEEEEEeCCHHHHH
Confidence 4555566789999999965432 222233344444443 2222456888888877654
No 372
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=55.75 E-value=24 Score=27.17 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=31.4
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+= -+......+..++..+ .+..+..+|.+|.+++.+.
T Consensus 160 ~laral~~~p~illLDEPt~~----------LD~~~~~~l~~~l~~~---~~~~g~tiiivsH~~~~~~ 215 (265)
T TIGR02769 160 NIARALAVKPKLIVLDEAVSN----------LDMVLQAVILELLRKL---QQAFGTAYLFITHDLRLVQ 215 (265)
T ss_pred HHHHHHhcCCCEEEEeCCccc----------CCHHHHHHHHHHHHHH---HHhcCcEEEEEeCCHHHHH
Confidence 345555678999999996432 2222233344444433 2222455777878766553
No 373
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=55.07 E-value=25 Score=27.12 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=30.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
+..|-...|.|+++||--+ +-+......+..++..+. ...+..+|.+|.+++.+
T Consensus 171 lAral~~~p~illLDEPt~----------~LD~~~~~~l~~~l~~~~---~~~g~tiii~tH~~~~~ 224 (269)
T cd03294 171 LARALAVDPDILLMDEAFS----------ALDPLIRREMQDELLRLQ---AELQKTIVFITHDLDEA 224 (269)
T ss_pred HHHHHhcCCCEEEEcCCCc----------cCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 4555567899999999543 233333344444444442 22244577777776544
No 374
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=55.03 E-value=26 Score=25.87 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=29.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
+..|-..+|.++++||--+-+ +......+..++..+ .+..+..+|.+|++++.+
T Consensus 139 laral~~~p~llllDEPt~~L----------D~~~~~~~~~~l~~~---~~~~~~tii~vsh~~~~~ 192 (213)
T TIGR01277 139 LARCLVRPNPILLLDEPFSAL----------DPLLREEMLALVKQL---CSERQRTLLMVTHHLSDA 192 (213)
T ss_pred HHHHHhcCCCEEEEcCCCccC----------CHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 444556679999999966433 222233344444433 222245567777766544
No 375
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=55.01 E-value=26 Score=26.21 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=31.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+..|-...|.++++||--.- -+......+..++..+ .+..+..+|.+|.+++.+.
T Consensus 140 laral~~~p~lllLDEP~~g----------LD~~~~~~~~~~l~~~---~~~~~~tiii~sH~~~~~~ 194 (232)
T PRK10771 140 LARCLVREQPILLLDEPFSA----------LDPALRQEMLTLVSQV---CQERQLTLLMVSHSLEDAA 194 (232)
T ss_pred HHHHHhcCCCEEEEeCCccc----------CCHHHHHHHHHHHHHH---HHhcCCEEEEEECCHHHHH
Confidence 44555667999999996532 2222334444444443 2222445777887777654
No 376
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=54.92 E-value=30 Score=26.04 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=32.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+- -+......+..++..+. . +..+|.+|++++.+.
T Consensus 153 ~laral~~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~~---~--~~tii~~sH~~~~~~ 206 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAG----------MTDEETEKTAELLKSLA---G--KHSVVVVEHDMEFVR 206 (242)
T ss_pred HHHHHHhcCCCEEEecCCccC----------CCHHHHHHHHHHHHHHh---c--CCEEEEEECCHHHHH
Confidence 455566677999999996543 23333345555555543 2 245788888776554
No 377
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=54.86 E-value=13 Score=27.77 Aligned_cols=63 Identities=25% Similarity=0.408 Sum_probs=37.0
Q ss_pred HHHHc-CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC
Q 030960 8 LAKEN-APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (168)
Q Consensus 8 ~a~~~-~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (168)
..... .+.+|+||-+..++...-... .......+.+..++..|..+....++.||.|+.....
T Consensus 109 ~l~~~~~~~liVIDSis~~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~~~ 172 (235)
T cd01123 109 ILIESSRIKLVIVDSVTALFRAEFDGR-GELAERQQHLAKLLRTLKRLADEFNVAVVITNQVTAR 172 (235)
T ss_pred HHhhcCCeeEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEeec
Confidence 33455 899999999999864211111 1112223556666676766655667777777554443
No 378
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=54.84 E-value=18 Score=27.19 Aligned_cols=53 Identities=21% Similarity=0.330 Sum_probs=30.1
Q ss_pred HHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecC
Q 030960 9 AKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATN 67 (168)
Q Consensus 9 a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn 67 (168)
++.+.|.+|+||-+..+.... ..... ...+..++..|..+....++.+|.++.
T Consensus 119 ~~~~~~~~vvID~l~~l~~~~--~~~~~----~~~~~~~~~~L~~la~~~~~~ii~~~q 171 (242)
T cd00984 119 KKEHGLGLIVIDYLQLMSGSK--KKGNR----QQEVAEISRSLKLLAKELNVPVIALSQ 171 (242)
T ss_pred HHhcCCCEEEEcCchhcCCCC--CCCCH----HHHHHHHHHHHHHHHHHhCCeEEEecc
Confidence 345589999999999875322 11111 123444555555554455666666653
No 379
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=54.64 E-value=55 Score=23.73 Aligned_cols=52 Identities=13% Similarity=0.339 Sum_probs=30.1
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (168)
.+..|-...|.++++||--+-+ +......+..++..+. .. +..+|.+|++++
T Consensus 118 ~la~al~~~p~vlllDEP~~~L----------D~~~~~~l~~~l~~~~---~~-~~tiiivtH~~~ 169 (192)
T cd03232 118 TIGVELAAKPSILFLDEPTSGL----------DSQAAYNIVRFLKKLA---DS-GQAILCTIHQPS 169 (192)
T ss_pred HHHHHHhcCCcEEEEeCCCcCC----------CHHHHHHHHHHHHHHH---Hc-CCEEEEEEcCCh
Confidence 3555667789999999965432 2223344444444442 22 345677777665
No 380
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=54.58 E-value=22 Score=26.31 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=13.6
Q ss_pred HHHHHHHcCCeEEEEccccccc
Q 030960 5 VFRLAKENAPAIIFIDEVDAIA 26 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~ 26 (168)
+|...+.....+++|||+|.-+
T Consensus 150 ~lA~~~~~~~p~~ilDEvd~~L 171 (220)
T PF02463_consen 150 LLALQRYKPSPFLILDEVDAAL 171 (220)
T ss_dssp HHHHHTCS--SEEEEESTTTTS
T ss_pred cccccccccccccccccccccc
Confidence 3444444456688999999754
No 381
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=54.52 E-value=31 Score=26.02 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=31.1
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.|+++||--+- -+......+..++..+. +. +..||.+|++++.+.
T Consensus 155 ~laral~~~p~illLDEPt~~----------LD~~~~~~l~~~l~~l~---~~-~~tiii~sH~~~~~~ 209 (248)
T PRK09580 155 DILQMAVLEPELCILDESDSG----------LDIDALKIVADGVNSLR---DG-KRSFIIVTHYQRILD 209 (248)
T ss_pred HHHHHHHcCCCEEEEeCCCcc----------CCHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHHH
Confidence 345555677999999996432 22222344444444442 22 345777777765443
No 382
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=54.52 E-value=42 Score=25.80 Aligned_cols=56 Identities=18% Similarity=0.332 Sum_probs=32.1
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+-+ +......+..++..+ ....+..+|.+|++++.+.
T Consensus 152 ~laral~~~p~lllLDEPt~~L----------D~~~~~~l~~~L~~~---~~~~~~tiiivtH~~~~~~ 207 (269)
T PRK13648 152 AIAGVLALNPSVIILDEATSML----------DPDARQNLLDLVRKV---KSEHNITIISITHDLSEAM 207 (269)
T ss_pred HHHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHH---HHhcCCEEEEEecCchHHh
Confidence 3455556779999999966432 222334444444444 2222445777777776553
No 383
>PHA00350 putative assembly protein
Probab=54.01 E-value=4.8 Score=33.42 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=40.0
Q ss_pred CCeEEEEcccccccccccCCCC--------Cc-----chHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCC
Q 030960 13 APAIIFIDEVDAIATARFDAQT--------GA-----DREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRP 79 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~--------~~-----~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~ 79 (168)
.-++|+|||+-.+++.+..... +. .......+. ++... ...+.=+|.+|.++..||..++.
T Consensus 81 ~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~-~l~~H----RH~G~DIiliTQ~~~~Id~~iR~- 154 (399)
T PHA00350 81 RGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLE-AFMRH----RHYNWDIILLTPNIRKIHSDIRA- 154 (399)
T ss_pred CCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHH-HHHHh----cccCceEEEEeCCHHHhhHHHHH-
Confidence 4589999999999987743110 00 000112222 22222 23355589999999999999886
Q ss_pred CCcceE
Q 030960 80 GRLDRK 85 (168)
Q Consensus 80 grf~~~ 85 (168)
+.+..
T Consensus 155 -lvE~~ 159 (399)
T PHA00350 155 -MIEMT 159 (399)
T ss_pred -hhhhe
Confidence 66653
No 384
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=53.98 E-value=26 Score=26.56 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=31.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+- -+......+..++..+ ....+..+|.+|+.++.+.
T Consensus 158 ~laral~~~p~vlllDEP~~~----------LD~~~~~~l~~~l~~~---~~~~~~tii~vsH~~~~~~ 213 (253)
T TIGR02323 158 QIARNLVTRPRLVFMDEPTGG----------LDVSVQARLLDLLRGL---VRDLGLAVIIVTHDLGVAR 213 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCcc----------CCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 345555678999999996432 2222334444444433 2222456777888776544
No 385
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=53.78 E-value=36 Score=24.26 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=30.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--.- -+......+..++..+. .. +..+|.+|++++.+
T Consensus 106 ~la~al~~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~~ 159 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSH----------LDVEGERALNQAIAALK---AA-GATRIVIAHRPETL 159 (173)
T ss_pred HHHHHHhcCCCEEEEECCccc----------cCHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHH
Confidence 455566778999999995532 23333344444544442 22 34567777766543
No 386
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=53.74 E-value=27 Score=21.18 Aligned_cols=31 Identities=32% Similarity=0.423 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 124 EIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 124 di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
=+..++..|...+...++..|+.+|+.-|++
T Consensus 43 ~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r 73 (75)
T PF00125_consen 43 LLVEILEEAGNLARHAKRKTITPRDIQLAVR 73 (75)
T ss_dssp HHHHHHHHHHHHHHHTTBSEEGHHHHHHHHH
T ss_pred hhhhhhhHHHHHHhhcCCcEecHHHHHHHHh
Confidence 3455667778888888888999999999876
No 387
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=53.71 E-value=26 Score=27.34 Aligned_cols=56 Identities=23% Similarity=0.338 Sum_probs=33.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.|+++||--+= -+......+..++..+. ...+..||.+|++++.+.
T Consensus 155 ~laraL~~~p~illlDEPt~~----------LD~~~~~~l~~~l~~l~---~~~g~tvl~vtH~~~~~~ 210 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAG----------LDPQSKRQVMRLLKSLQ---TDENKTIILVSHDMNEVA 210 (286)
T ss_pred HHHHHHHhCCCEEEEECCccc----------CCHHHHHHHHHHHHHHH---HhCCCEEEEEecCHHHHH
Confidence 345556678999999996543 23333344444555442 233456777887776553
No 388
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=53.44 E-value=25 Score=27.12 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=31.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.|+++||--.-+ +......+..++..+ .+..+..+|.+|++++.+.
T Consensus 161 ~laral~~~p~lllLDEPt~~L----------D~~~~~~~~~~l~~~---~~~~~~tiiivsH~~~~i~ 216 (268)
T PRK10419 161 CLARALAVEPKLLILDEAVSNL----------DLVLQAGVIRLLKKL---QQQFGTACLFITHDLRLVE 216 (268)
T ss_pred HHHHHHhcCCCEEEEeCCCccc----------CHHHHHHHHHHHHHH---HHHcCcEEEEEECCHHHHH
Confidence 4555667789999999965422 222223344444443 2222455777777766543
No 389
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=53.42 E-value=8.6 Score=35.15 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=55.4
Q ss_pred HcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC-CCccccCCCCcceEEecC
Q 030960 11 ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT-LDPALLRPGRLDRKIEFP 89 (168)
Q Consensus 11 ~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~-ld~al~r~grf~~~i~~~ 89 (168)
....-+|+|||++.+.... . .-+...+..|-..-...++-+|.||.+|+. +-..++. .|...|.+.
T Consensus 637 ~lP~iviiiDe~adlm~~~-------~----k~ve~~i~rLa~~ara~GIHlilatqRps~dVit~ika--nipsrIaf~ 703 (858)
T COG1674 637 ELPYIVIIIDEYADLMMVA-------G----KELEELIARLAQKGRAAGIHLILATQRPSVDVITGIKA--NIPTRIALR 703 (858)
T ss_pred CCCeEEEEEcchHHHhhhh-------h----HHHHHHHHHHHHhhhhcceEEEEecCCCCcchhHHHHh--CCcceEEEE
Confidence 3446778899999986322 1 113334444433345568999999999998 7777777 899999999
Q ss_pred CCCHHHHHHHHH
Q 030960 90 LPDRRQKRLVFQ 101 (168)
Q Consensus 90 ~P~~~~R~~il~ 101 (168)
.-+..+...|+.
T Consensus 704 v~s~~dsr~il~ 715 (858)
T COG1674 704 LSSKIDSRLILG 715 (858)
T ss_pred EcCccceeeecc
Confidence 888888887775
No 390
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=53.36 E-value=23 Score=26.81 Aligned_cols=86 Identities=6% Similarity=0.094 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCC--eEEEEecCCCCCCCc------
Q 030960 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVN--VKVIMATNRADTLDP------ 74 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~--v~vi~ttn~~~~ld~------ 74 (168)
..+.+.+....|.+|+||-+-.+.. . ...+......+ +..+..+....+ ++++.-++....-++
T Consensus 101 ~~l~~~~~~~~~~lvviDpl~~~~~-~---~~~d~~~~~~~----~~~L~~~a~~~g~avl~v~H~~K~~~~~~~~~~~~ 172 (239)
T cd01125 101 ERIIEQLLIRRIDLVVIDPLVSFHG-V---SENDNGAMDAV----IKALRRIAAQTGAAILLVHHVRKGSAKDGDTQEAA 172 (239)
T ss_pred HHHHHHHHhcCCCEEEECChHHhCC-C---CcCCHHHHHHH----HHHHHHHHHHhCCEEEEEeccCcccccCccccccc
Confidence 3455556667899999998777621 1 11111122233 333333222223 444444443332221
Q ss_pred ----cccCCCCcceEEecCCCCHHHHHH
Q 030960 75 ----ALLRPGRLDRKIEFPLPDRRQKRL 98 (168)
Q Consensus 75 ----al~r~grf~~~i~~~~P~~~~R~~ 98 (168)
++.. -.+..+.+..++.++..+
T Consensus 173 rGssal~~--~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 173 RGASALVD--GARWVRALTRMTSEEAEK 198 (239)
T ss_pred CcHHHHhc--ccceEEEEeeCCHHHHHh
Confidence 1211 266778888888777776
No 391
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=53.33 E-value=30 Score=26.28 Aligned_cols=54 Identities=15% Similarity=0.312 Sum_probs=30.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
+..|-...|.++++||--+=+ +......+..++..+ .+..+..+|.+|.+++.+
T Consensus 157 laral~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~---~~~~~~tiiivsH~~~~~ 210 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSAL----------DPELVGEVLNVIRRL---ASEHDLTMLLVTHEMGFA 210 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHH---HHhcCcEEEEEeCCHHHH
Confidence 445556679999999966432 222233444444443 222345677777776654
No 392
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=53.18 E-value=35 Score=26.85 Aligned_cols=55 Identities=18% Similarity=0.434 Sum_probs=33.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+ +-+......+..++..+. .. +..||.+|.+++.+.
T Consensus 134 ~la~al~~~p~lllLDEPt~----------gLD~~~~~~l~~~l~~~~---~~-g~tvi~~sH~~~~~~ 188 (302)
T TIGR01188 134 DIAASLIHQPDVLFLDEPTT----------GLDPRTRRAIWDYIRALK---EE-GVTILLTTHYMEEAD 188 (302)
T ss_pred HHHHHHhcCCCEEEEeCCCc----------CCCHHHHHHHHHHHHHHH---hC-CCEEEEECCCHHHHH
Confidence 45566677899999999432 333333444555555542 22 456888888876554
No 393
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=53.17 E-value=28 Score=27.20 Aligned_cols=55 Identities=16% Similarity=0.363 Sum_probs=32.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+ +-+......+..++..+ ....+..||.+|.+.+.+
T Consensus 154 ~iAraL~~~P~llllDEPt~----------gLD~~~~~~l~~~l~~l---~~~~g~tvi~vtHd~~~~ 208 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTA----------GLDPKGRDEILNKIKEL---HKEYNMTIILVSHSMEDV 208 (287)
T ss_pred HHHHHHHcCCCEEEEECCcc----------CCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 34556677899999999543 22333334444444444 223345677788776644
No 394
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=53.07 E-value=36 Score=24.99 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=31.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+= -+......+..++..+. .. +..+|.+|.+++.+
T Consensus 138 ~la~al~~~p~~lllDEP~~~----------LD~~~~~~~~~~l~~~~---~~-~~tii~~sH~~~~~ 191 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSG----------LDPVNVELLKDVIRELA---RA-GKTVILSTHQMELV 191 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcC----------CCHHHHHHHHHHHHHHH---HC-CCEEEEECCCHHHH
Confidence 355556678999999995532 22333344444444442 22 45677888876644
No 395
>PF13175 AAA_15: AAA ATPase domain
Probab=53.02 E-value=26 Score=28.38 Aligned_cols=42 Identities=24% Similarity=0.481 Sum_probs=27.1
Q ss_pred EEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC
Q 030960 16 IIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (168)
Q Consensus 16 ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (168)
|++|||=|..+ ++..++.+...|..+ .+..++=||.||++|.
T Consensus 372 illidEPE~~L----------Hp~~q~~~~~~L~~~---~~~~~~QiiitTHSp~ 413 (415)
T PF13175_consen 372 ILLIDEPELHL----------HPQAQRKFIDFLKKL---SKNNNIQIIITTHSPF 413 (415)
T ss_pred EEEEeCccccC----------CHHHHHHHHHHHHHH---hccCCCEEEEECCChh
Confidence 99999988765 233334444444443 3345667999999885
No 396
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=53.02 E-value=44 Score=24.97 Aligned_cols=52 Identities=21% Similarity=0.358 Sum_probs=30.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
+..|-...|.++++||--.-+ +......+..++..+ .+ +..+|.+|++++.+
T Consensus 148 la~aL~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~---~~--~~tiii~sh~~~~~ 199 (236)
T cd03253 148 IARAILKNPPILLLDEATSAL----------DTHTEREIQAALRDV---SK--GRTTIVIAHRLSTI 199 (236)
T ss_pred HHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHh---cC--CCEEEEEcCCHHHH
Confidence 445556679999999965432 222223344444444 23 44577777777655
No 397
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=53.02 E-value=29 Score=26.76 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=31.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+ +-+......+..++..+. ...+..||.+|++++.+
T Consensus 143 ~laraL~~~p~lllLDEPt~----------~LD~~~~~~l~~~L~~~~---~~~~~tviivsHd~~~~ 197 (257)
T PRK11247 143 ALARALIHRPGLLLLDEPLG----------ALDALTRIEMQDLIESLW---QQHGFTVLLVTHDVSEA 197 (257)
T ss_pred HHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHH
Confidence 34555567799999999543 233333344444544441 22234577788877654
No 398
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=53.01 E-value=33 Score=25.20 Aligned_cols=54 Identities=24% Similarity=0.436 Sum_probs=30.8
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+..|-...|.++++||--+- -+......+..++..+. +. +..+|.+|++++.+.
T Consensus 148 la~al~~~p~lllLDEPt~~----------LD~~~~~~l~~~l~~~~---~~-~~tii~~tH~~~~~~ 201 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGN----------LDPDLSERILDLLKRLN---KR-GTTVIVATHDLSLVD 201 (214)
T ss_pred HHHHHhCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHH
Confidence 44555667999999996532 23333344444554442 22 345777777765443
No 399
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=52.95 E-value=26 Score=26.67 Aligned_cols=55 Identities=15% Similarity=0.259 Sum_probs=33.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+ +-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 148 ~laral~~~p~llllDEP~~----------~LD~~~~~~l~~~l~~l~---~~-~~tiii~tH~~~~~~ 202 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTT----------YLDINHQVELMRLMRELN---TQ-GKTVVTVLHDLNQAS 202 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHHH---HC-CCEEEEEECCHHHHH
Confidence 34555667799999999553 233333344555555442 22 455788888777554
No 400
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=52.89 E-value=29 Score=27.14 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=32.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.|+++||--+- -+......+..++..+. .. +..||.+|++++.+.
T Consensus 154 aiA~aL~~~p~illLDEPt~g----------LD~~~~~~l~~~l~~l~---~~-g~til~vtHd~~~~~ 208 (288)
T PRK13643 154 AIAGILAMEPEVLVLDEPTAG----------LDPKARIEMMQLFESIH---QS-GQTVVLVTHLMDDVA 208 (288)
T ss_pred HHHHHHHhCCCEEEEECCccC----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHHH
Confidence 345555678999999995542 22333344445555543 22 456888888776543
No 401
>COG1106 Predicted ATPases [General function prediction only]
Probab=52.87 E-value=6.3 Score=32.39 Aligned_cols=51 Identities=20% Similarity=0.408 Sum_probs=34.7
Q ss_pred eEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccC
Q 030960 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLR 78 (168)
Q Consensus 15 ~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r 78 (168)
-+++|||+|..+... .+..++..+..-.....+-+++||.+..-+|-.+.+
T Consensus 272 k~l~iDEie~~lHp~-------------lm~~~l~~~~~~~~~~niq~~~TTH~~e~id~~l~~ 322 (371)
T COG1106 272 KVLLIDEIENGLHPS-------------LMILILETLEDKVKNNNIQVFLTTHSTEFIDLLLER 322 (371)
T ss_pred ceEEeehhhhccCHH-------------HHHHHHHHHHhhcccceEEEEeecccHHHHHHHHHh
Confidence 789999999865322 222233333222333479999999999999998886
No 402
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=52.82 E-value=34 Score=25.21 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=31.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+- -+......+..++..+. +. +..+|.+|++++.+.
T Consensus 146 ~laral~~~p~illlDEPt~~----------LD~~~~~~l~~~l~~~~---~~-~~tii~~tH~~~~~~ 200 (218)
T cd03266 146 AIARALVHDPPVLLLDEPTTG----------LDVMATRALREFIRQLR---AL-GKCILFSTHIMQEVE 200 (218)
T ss_pred HHHHHHhcCCCEEEEcCCCcC----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 345555678999999996543 23333344444554442 22 345777777766443
No 403
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=52.74 E-value=38 Score=24.98 Aligned_cols=54 Identities=19% Similarity=0.383 Sum_probs=32.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+-+ +......+..++..+. + +..+|.+|++++.+.
T Consensus 143 ~la~al~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~~---~--~~tii~~sH~~~~~~ 196 (220)
T cd03263 143 SLAIALIGGPSVLLLDEPTSGL----------DPASRRAIWDLILEVR---K--GRSIILTTHSMDEAE 196 (220)
T ss_pred HHHHHHhcCCCEEEECCCCCCC----------CHHHHHHHHHHHHHHh---c--CCEEEEEcCCHHHHH
Confidence 3445556779999999965432 2223344444554442 2 256888888877554
No 404
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=52.66 E-value=31 Score=27.81 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=39.5
Q ss_pred HHHHHHcCCeEEEEcccccccccccCC---CCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDA---QTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~---~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (168)
....+...+.+|+||-+-++.+...-. .........+.++.++..|..+-...++.+|.|...-+.
T Consensus 126 ~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~~ 194 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQIREK 194 (321)
T ss_pred HHHhhccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEecceec
Confidence 344556789999999999998642111 111111223555666666666556667778887554443
No 405
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=52.54 E-value=39 Score=24.78 Aligned_cols=54 Identities=26% Similarity=0.386 Sum_probs=32.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--. +-+......+..++..+. .. ..+|.+|++++.+.
T Consensus 140 ~la~al~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~---~~--~tii~vsH~~~~~~ 193 (211)
T cd03264 140 GIAQALVGDPSILIVDEPTA----------GLDPEERIRFRNLLSELG---ED--RIVILSTHIVEDVE 193 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHHh---CC--CEEEEEcCCHHHHH
Confidence 44556677899999999543 233333344555555553 22 45777777766543
No 406
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=52.47 E-value=35 Score=26.69 Aligned_cols=64 Identities=17% Similarity=0.372 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccC-----
Q 030960 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLR----- 78 (168)
Q Consensus 4 ~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r----- 78 (168)
.++..++.+.|.||++||.- .. ..+..++..+. .+..+|++|..+ .+.....|
T Consensus 185 ~~~~~i~~~~P~villDE~~------------~~----e~~~~l~~~~~-----~G~~vI~ttH~~-~~~~~~~r~~~~~ 242 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIG------------RE----EDVEALLEALH-----AGVSIIATAHGR-DVEDLYKRPVFKE 242 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCC------------cH----HHHHHHHHHHh-----CCCEEEEEechh-HHHHHHhChHHHH
Confidence 35667777899999999941 11 22333444442 255688888754 34334333
Q ss_pred ---CCCcceEEecC
Q 030960 79 ---PGRLDRKIEFP 89 (168)
Q Consensus 79 ---~grf~~~i~~~ 89 (168)
.+-|++.+.+.
T Consensus 243 l~~~~~~~r~i~L~ 256 (270)
T TIGR02858 243 LIENEAFERYVVLS 256 (270)
T ss_pred HHhcCceEEEEEEe
Confidence 34577777664
No 407
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=52.28 E-value=29 Score=27.14 Aligned_cols=56 Identities=14% Similarity=0.272 Sum_probs=32.1
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-..+|.++++||--+-+ +......+..++..+ ....+..||.+|.+++.+.
T Consensus 155 ~lAraL~~~P~llllDEPt~~L----------D~~~~~~l~~~L~~l---~~~~g~tviiitHd~~~~~ 210 (290)
T PRK13634 155 AIAGVLAMEPEVLVLDEPTAGL----------DPKGRKEMMEMFYKL---HKEKGLTTVLVTHSMEDAA 210 (290)
T ss_pred HHHHHHHcCCCEEEEECCcccC----------CHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 3455557789999999965432 222223333344333 2333456788888766543
No 408
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=52.26 E-value=44 Score=24.66 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=31.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||-..-+ +......+..++..+. . +..+|.+|++++.+.
T Consensus 149 ~laral~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~~ 202 (221)
T cd03244 149 CLARALLRKSKILVLDEATASV----------DPETDALIQKTIREAF---K--DCTVLTIAHRLDTII 202 (221)
T ss_pred HHHHHHhcCCCEEEEeCccccC----------CHHHHHHHHHHHHHhc---C--CCEEEEEeCCHHHHh
Confidence 3445556779999999965432 2223344555555442 2 235777777766553
No 409
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=51.94 E-value=29 Score=26.50 Aligned_cols=55 Identities=15% Similarity=0.279 Sum_probs=32.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--. +-+......+..++..+. +. +..+|.+|++++.++
T Consensus 162 ~laral~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~l~---~~-g~tiiivsH~~~~~~ 216 (257)
T PRK10619 162 SIARALAMEPEVLLFDEPTS----------ALDPELVGEVLRIMQQLA---EE-GKTMVVVTHEMGFAR 216 (257)
T ss_pred HHHHHHhcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHHHHH
Confidence 34555567899999999543 223333344555555542 22 455777777776554
No 410
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=51.93 E-value=49 Score=24.68 Aligned_cols=53 Identities=23% Similarity=0.399 Sum_probs=30.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+..|-...|.++++||--+- -+......+..++..+. + +..+|.+|++++.+.
T Consensus 149 la~al~~~p~lllLDEP~~~----------LD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~~ 201 (234)
T cd03251 149 IARALLKDPPILILDEATSA----------LDTESERLVQAALERLM---K--NRTTFVIAHRLSTIE 201 (234)
T ss_pred HHHHHhcCCCEEEEeCcccc----------CCHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHHh
Confidence 44455667999999996532 22222344444544442 2 345777777776553
No 411
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=51.85 E-value=38 Score=26.29 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=32.5
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+..|-...|.++++||--+ +-+......+..++..+ .+..+..||.+|.+++.+.
T Consensus 155 laral~~~p~llllDEPt~----------gLD~~~~~~l~~~l~~l---~~~~g~tillvtH~~~~~~ 209 (280)
T PRK13633 155 IAGILAMRPECIIFDEPTA----------MLDPSGRREVVNTIKEL---NKKYGITIILITHYMEEAV 209 (280)
T ss_pred HHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEecChHHHh
Confidence 4455567899999999553 22333334444444444 2233556777788777654
No 412
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=51.34 E-value=43 Score=26.38 Aligned_cols=54 Identities=15% Similarity=0.316 Sum_probs=33.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--. +-+......+..++..+. + +..||.+|.+++.+.
T Consensus 143 ~la~al~~~p~lliLDEPt~----------gLD~~~~~~l~~~l~~~~---~--~~tiii~sH~l~~~~ 196 (301)
T TIGR03522 143 GLAQALIHDPKVLILDEPTT----------GLDPNQLVEIRNVIKNIG---K--DKTIILSTHIMQEVE 196 (301)
T ss_pred HHHHHHhcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHhc---C--CCEEEEEcCCHHHHH
Confidence 46667778899999999543 333333344444555542 2 255788888877654
No 413
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=51.14 E-value=8 Score=25.15 Aligned_cols=49 Identities=29% Similarity=0.232 Sum_probs=15.9
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcCCC
Q 030960 112 DYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 112 ~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~~ 160 (168)
+-+...+.+.-..|..+|..|...|..++...++.+||.-++++-....
T Consensus 23 eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~D~~Kl 71 (93)
T PF02269_consen 23 ETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLRKDPKKL 71 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHhcCHHHH
Confidence 3334444555678889999999999999888999999999998755433
No 414
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=51.14 E-value=44 Score=24.84 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=30.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
+..|-...|.++++||--.- -+......+..++..+. ...+..||.+|++++.+
T Consensus 157 la~al~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 210 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGN----------LDRQTGDKIADLLFSLN---REHGTTLILVTHDLQLA 210 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 44455667999999995532 23333344444444442 22234577777776543
No 415
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=50.82 E-value=34 Score=25.87 Aligned_cols=55 Identities=22% Similarity=0.389 Sum_probs=31.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+..|-...|.++++||--+-+ +......+..++..+. ...+..||.+|++++.+.
T Consensus 142 la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~g~tii~~sH~~~~~~ 196 (241)
T PRK14250 142 IARTLANNPEVLLLDEPTSAL----------DPTSTEIIEELIVKLK---NKMNLTVIWITHNMEQAK 196 (241)
T ss_pred HHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhCCCEEEEEeccHHHHH
Confidence 445556679999999965432 2222344444444442 222345777777776543
No 416
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=50.77 E-value=77 Score=26.25 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=42.4
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
..+.||+||+..+- ++. +.+..+. |.-.. .+++.+++...-.-..+-.=||| ...+.+.|.+
T Consensus 94 ~~~yifLDEIq~v~--------~W~----~~lk~l~---d~~~~--~v~itgsss~ll~~~~~~~L~GR-~~~~~l~PlS 155 (398)
T COG1373 94 EKSYIFLDEIQNVP--------DWE----RALKYLY---DRGNL--DVLITGSSSSLLSKEISESLAGR-GKDLELYPLS 155 (398)
T ss_pred CCceEEEecccCch--------hHH----HHHHHHH---ccccc--eEEEECCchhhhccchhhhcCCC-ceeEEECCCC
Confidence 34799999998762 222 3333332 21111 56666666655555555556789 6778888889
Q ss_pred HHHHHH
Q 030960 93 RRQKRL 98 (168)
Q Consensus 93 ~~~R~~ 98 (168)
..+...
T Consensus 156 F~Efl~ 161 (398)
T COG1373 156 FREFLK 161 (398)
T ss_pred HHHHHh
Confidence 999865
No 417
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=50.72 E-value=40 Score=26.12 Aligned_cols=54 Identities=15% Similarity=0.262 Sum_probs=32.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.|+++||--+ +-+......+..++..+. .. +..+|.+|++++.+
T Consensus 146 ~laral~~~p~lllLDEPt~----------gLD~~~~~~l~~~l~~l~---~~-g~til~~tH~~~~~ 199 (274)
T PRK13644 146 ALAGILTMEPECLIFDEVTS----------MLDPDSGIAVLERIKKLH---EK-GKTIVYITHNLEEL 199 (274)
T ss_pred HHHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHH---hC-CCEEEEEecCHHHH
Confidence 45566677899999999554 222222344444444442 22 45677778877765
No 418
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=50.67 E-value=38 Score=25.32 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=31.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+- -+......+..++..+. .. +..+|.+|++++.+.
T Consensus 153 ~la~al~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~~~---~~-~~tii~vsH~~~~~~ 207 (236)
T cd03219 153 EIARALATDPKLLLLDEPAAG----------LNPEETEELAELIRELR---ER-GITVLLVEHDMDVVM 207 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccc----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHHH
Confidence 344555667999999995432 23333344444554442 22 345777777776543
No 419
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=50.55 E-value=30 Score=26.97 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=32.4
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--.- -+......+..++..+ ....+..||.+|.+++.+.
T Consensus 151 ~laraL~~~p~lLilDEPt~g----------LD~~~~~~l~~~l~~l---~~~~g~tillvsH~~~~~~ 206 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTAG----------LDPMGVSEIMKLLVEM---QKELGLTIIIATHDIDIVP 206 (283)
T ss_pred HHHHHHHcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHH---HHhCCCEEEEEecCHHHHH
Confidence 455666778999999996543 2233334444444444 2222445777777766544
No 420
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=50.47 E-value=38 Score=26.39 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=31.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--. +-+......+..++..+. ...+..||.+|++++.+
T Consensus 153 ~laral~~~P~llllDEPt~----------gLD~~~~~~l~~~l~~l~---~~~g~tvli~tH~~~~~ 207 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTS----------MLDPAGKEQILKLIRKLK---KKNNLTVISITHDIDEA 207 (282)
T ss_pred HHHHHHHcCCCEEEEECCcc----------cCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 34556677899999999543 233333344444544442 22244577777776654
No 421
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=50.38 E-value=36 Score=26.16 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=31.4
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+ +-+......+..++..+. .. ..||.+|++++.+.
T Consensus 161 ~laral~~~p~lllLDEPt~----------~LD~~~~~~l~~~L~~~~---~~--~tvi~vtH~~~~~~ 214 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCS----------ALDPISTLRIEELMHELK---EQ--YTIIIVTHNMQQAA 214 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHHh---cC--CEEEEEecCHHHHH
Confidence 44555567899999999543 222333344445555543 22 35777777776554
No 422
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=50.22 E-value=37 Score=25.67 Aligned_cols=54 Identities=15% Similarity=0.295 Sum_probs=32.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+-+ +......+..++..+. . +..||.+|.+++.+.
T Consensus 156 ~laral~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~~---~--~~tiii~sH~~~~~~ 209 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTSAL----------DPISTLKIEELIQELK---K--DYTIVIVTHNMQQAS 209 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHh---c--CCeEEEEEeCHHHHH
Confidence 3455556789999999965432 3333344555555553 2 234677777766443
No 423
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=50.22 E-value=27 Score=28.05 Aligned_cols=74 Identities=16% Similarity=0.283 Sum_probs=45.5
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCC-CCeEEEEecCCCCC----CCccccCCCCcceEEe
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQT-VNVKVIMATNRADT----LDPALLRPGRLDRKIE 87 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~v~vi~ttn~~~~----ld~al~r~grf~~~i~ 87 (168)
.|-||+|+|+|++- ..+++.|+..+...... +=++|+|.+..++. ++.+..+ ++....
T Consensus 199 ~~lVIi~eD~EsF~--------------~~VL~dlI~ils~~~~~lP~vli~GiaTs~~~~~~~Lp~~~~~--~L~~~~- 261 (330)
T PF07034_consen 199 PPLVIIFEDFESFD--------------SQVLQDLILILSSYLDRLPFVLIFGIATSVEAFHSRLPRSTLS--LLRIKK- 261 (330)
T ss_pred CCEEEEEcccccCC--------------HHHHHHHHHHHHhccCCcCEEEEEecCCChHHHHhhCCHHHHh--hcCceE-
Confidence 49999999999873 17888888888765433 33677776666654 4555555 554433
Q ss_pred cCCCCHHH-HHHHHHhh
Q 030960 88 FPLPDRRQ-KRLVFQMN 103 (168)
Q Consensus 88 ~~~P~~~~-R~~il~~~ 103 (168)
|..++..+ -.++++..
T Consensus 262 F~~~~~~~~l~~v~~~~ 278 (330)
T PF07034_consen 262 FQLQSSSEILERVLEKV 278 (330)
T ss_pred EEeCChHHHHHHHHHHH
Confidence 44444444 44555533
No 424
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=50.21 E-value=41 Score=25.42 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=32.4
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+= -+......+..++..+. + +..+|.+|++++.+.
T Consensus 155 ~laral~~~p~llllDEP~~~----------LD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~~ 208 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSA----------LDPIATHKIEELMEELK---K--NYTIVIVTHSMQQAR 208 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCcc----------CCHHHHHHHHHHHHHHh---c--CCeEEEEecCHHHHH
Confidence 344555667999999996542 23333355555655553 2 245777777766543
No 425
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=50.12 E-value=42 Score=25.38 Aligned_cols=54 Identities=22% Similarity=0.349 Sum_probs=31.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+-+ +......+..++..+. . +..+|.+|.+++.+.
T Consensus 152 ~laral~~~p~lllLDEP~~~L----------D~~~~~~l~~~l~~~~---~--~~tiii~tH~~~~~~ 205 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSAL----------DPISSGVIEELLKELS---H--NLSMIMVTHNMQQGK 205 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHh---C--CCEEEEEecCHHHHH
Confidence 4555667789999999966432 2223344444544442 2 345777777766554
No 426
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=50.05 E-value=35 Score=26.06 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=32.2
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+= -+......+..++..+. . +..+|.+|++++.++
T Consensus 160 ~laral~~~p~lllLDEPt~~----------LD~~~~~~l~~~l~~~~---~--~~tiii~tH~~~~i~ 213 (259)
T PRK14260 160 CIARALAIKPKVLLMDEPCSA----------LDPIATMKVEELIHSLR---S--ELTIAIVTHNMQQAT 213 (259)
T ss_pred HHHHHHhcCCCEEEEcCCCcc----------CCHHHHHHHHHHHHHHh---c--CCEEEEEeCCHHHHH
Confidence 345555668999999995532 22333344444444442 2 246788888877765
No 427
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=49.94 E-value=61 Score=23.56 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=30.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (168)
.+..|-...|.++++||--+-+ +......+..++..+. +. +..+|.+|++++
T Consensus 144 ~laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~ 195 (206)
T TIGR03608 144 ALARAILKDPPLILADEPTGSL----------DPKNRDEVLDLLLELN---DE-GKTIIIVTHDPE 195 (206)
T ss_pred HHHHHHHcCCCEEEEeCCcCCC----------CHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHH
Confidence 3455556789999999966432 2223344444444442 22 345666777765
No 428
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=49.84 E-value=20 Score=32.43 Aligned_cols=69 Identities=20% Similarity=0.302 Sum_probs=42.4
Q ss_pred HcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCc-----cccCCCCcceE
Q 030960 11 ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP-----ALLRPGRLDRK 85 (168)
Q Consensus 11 ~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~-----al~r~grf~~~ 85 (168)
...|.++++||+...+... .....+..++..+ .+. +..++.+|.+++++.. +++. -....
T Consensus 640 ~g~p~il~iDE~w~~L~~~---------~~~~~i~~~lk~~---RK~-~~~~i~~TQ~~~d~~~s~~~~~i~~--~~~t~ 704 (800)
T PRK13898 640 DGTPSMIVLDEAWALIDNP---------VFAPKIKDWLKVL---RKL-NTFVIFATQSVEDASKSAISDTLVQ--QTATQ 704 (800)
T ss_pred cCCCcEEEEeCChhhCCCH---------HHHHHHHHHHHHH---HHc-CCEEEEEeCCHHHHHhChhHHHHHH--hCCeE
Confidence 4569999999999886321 1223334444433 333 4457788888776543 3444 57777
Q ss_pred EecCCCCHH
Q 030960 86 IEFPLPDRR 94 (168)
Q Consensus 86 i~~~~P~~~ 94 (168)
|.+|.|...
T Consensus 705 I~lpn~~a~ 713 (800)
T PRK13898 705 IFLPNLKAT 713 (800)
T ss_pred EEcCChhhH
Confidence 888877643
No 429
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=49.81 E-value=36 Score=26.38 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=32.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+- -+......+..++..+. .. +..||.+|.+++.+
T Consensus 155 ~la~al~~~p~lllLDEPt~~----------LD~~~~~~l~~~l~~~~---~~-~~tiiivsH~~~~~ 208 (280)
T PRK13649 155 AIAGILAMEPKILVLDEPTAG----------LDPKGRKELMTLFKKLH---QS-GMTIVLVTHLMDDV 208 (280)
T ss_pred HHHHHHHcCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEeccHHHH
Confidence 455566778999999996543 23333344444554442 22 45577777776644
No 430
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=49.64 E-value=76 Score=23.06 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=29.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (168)
.+..|-...|.++++||--+-+ +......+..++..+. .. +..+|.+|.++.
T Consensus 121 ~laral~~~p~illlDEP~~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~ 172 (194)
T cd03213 121 SIALELVSNPSLLFLDEPTSGL----------DSSSALQVMSLLRRLA---DT-GRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHH---hC-CCEEEEEecCch
Confidence 3455556779999999965432 2223344444444442 22 445666666654
No 431
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=49.60 E-value=39 Score=25.53 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=30.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+-+ +......+..++..+. .. +..+|.+|.+++.+
T Consensus 154 ~la~al~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tvi~~tH~~~~~ 207 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSAL----------DPELVGEVLNTIRQLA---QE-KRTMVIVTHEMSFA 207 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHHHH
Confidence 3445556679999999965432 2223344444444442 22 34567777776654
No 432
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=49.55 E-value=36 Score=26.43 Aligned_cols=55 Identities=24% Similarity=0.315 Sum_probs=32.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+-+ +......+..++..+ .+..+..+|.+|++++.+
T Consensus 150 ~lAral~~~p~lLlLDEPt~~L----------D~~~~~~l~~~l~~l---~~~~g~tilivtH~~~~~ 204 (279)
T PRK13650 150 AIAGAVAMRPKIIILDEATSML----------DPEGRLELIKTIKGI---RDDYQMTVISITHDLDEV 204 (279)
T ss_pred HHHHHHHcCCCEEEEECCcccC----------CHHHHHHHHHHHHHH---HHhcCCEEEEEecCHHHH
Confidence 4556667789999999965432 222233444444444 223345577777776655
No 433
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=49.32 E-value=39 Score=25.62 Aligned_cols=54 Identities=17% Similarity=0.272 Sum_probs=31.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+= -+......+..++..+. . +..+|.+|++++.+.
T Consensus 159 ~laral~~~p~lllLDEP~~g----------LD~~~~~~l~~~l~~~~---~--~~tvii~sh~~~~~~ 212 (253)
T PRK14261 159 CIARTLAVNPEVILMDEPCSA----------LDPIATAKIEDLIEDLK---K--EYTVIIVTHNMQQAA 212 (253)
T ss_pred HHHHHHhcCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHh---h--CceEEEEEcCHHHHH
Confidence 344555667999999996542 23333344445554443 2 245777777766554
No 434
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=49.31 E-value=38 Score=25.43 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=31.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+- -+......+..++..+. +. +..||.+|.+++.+.
T Consensus 154 ~la~al~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~~~---~~-~~tvi~vsH~~~~~~ 208 (243)
T TIGR01978 154 EILQMALLEPKLAILDEIDSG----------LDIDALKIVAEGINRLR---EP-DRSFLIITHYQRLLN 208 (243)
T ss_pred HHHHHHhcCCCEEEecCCccc----------CCHHHHHHHHHHHHHHH---HC-CcEEEEEEecHHHHH
Confidence 345555677999999995432 22333344444554442 22 345777787776543
No 435
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=49.23 E-value=36 Score=29.30 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=54.5
Q ss_pred CeEEEEecCC---CCCCCccccCCCCcceEEecC--CC-CHHHHHHHHH---hhcC----CCCCHHHH------HhCCCC
Q 030960 59 NVKVIMATNR---ADTLDPALLRPGRLDRKIEFP--LP-DRRQKRLVFQ---MNLS----DEVDLEDY------VSRPDK 119 (168)
Q Consensus 59 ~v~vi~ttn~---~~~ld~al~r~grf~~~i~~~--~P-~~~~R~~il~---~~l~----~~~~~~~l------a~~t~g 119 (168)
+|++||.-.. ....||.+.. .|....+|. .| +.+....+.+ .... ..++-+.+ +.+..+
T Consensus 388 KVILiG~~~~y~~L~~~D~dF~~--lFkv~aef~~~~~~~~e~~~~~~~~i~~~~~~~~L~~~~~~Av~~li~~~~R~~q 465 (509)
T PF13654_consen 388 KVILIGDRELYYLLYEYDPDFYK--LFKVKAEFDSEMPRTEENIRQYARFIASICQKEGLPPFDRSAVARLIEYSARLDQ 465 (509)
T ss_dssp EEEEEE-TTHHHHS-HHHHHHHH--HHSEEEE--SEEE--HHHHHHHHHHHHHHHHHHSS--BBHHHHHHHHHHHHHCC-
T ss_pred EEEEEcCHHHHHHHHHhCHHHHh--CCCEEEEccccCCCCHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhC
Confidence 4777776665 5677888876 666666553 22 2333333332 1111 12222211 222222
Q ss_pred ----CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 120 ----ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 120 ----~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
....+|..++.+|...|-..+...|+.+|+.+|++..
T Consensus 466 ~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~r 506 (509)
T PF13654_consen 466 DKLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIEER 506 (509)
T ss_dssp SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH-
T ss_pred CEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHcc
Confidence 5778999999999999999999999999999999864
No 436
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=49.04 E-value=38 Score=24.99 Aligned_cols=53 Identities=15% Similarity=0.325 Sum_probs=30.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
+..|-...|.++++||--+ +-+......+..++..+. . .+..+|.+|++++.+
T Consensus 143 laral~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~---~-~~~tiii~sH~~~~~ 195 (222)
T cd03224 143 IARALMSRPKLLLLDEPSE----------GLAPKIVEEIFEAIRELR---D-EGVTILLVEQNARFA 195 (222)
T ss_pred HHHHHhcCCCEEEECCCcc----------cCCHHHHHHHHHHHHHHH---H-CCCEEEEEeCCHHHH
Confidence 3444456799999999543 223333344444554442 2 244577777776643
No 437
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=48.97 E-value=40 Score=25.99 Aligned_cols=55 Identities=15% Similarity=0.171 Sum_probs=31.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.|+++||--+- -+......+..++..+. .. +..||.+|++++.+.
T Consensus 146 ~laraL~~~p~lllLDEPt~~----------LD~~~~~~l~~~l~~~~---~~-g~tii~vtH~~~~~~ 200 (271)
T PRK13638 146 AIAGALVLQARYLLLDEPTAG----------LDPAGRTQMIAIIRRIV---AQ-GNHVIISSHDIDLIY 200 (271)
T ss_pred HHHHHHHcCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 345556778999999996532 23333344444554442 22 345777777776553
No 438
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=48.96 E-value=5.8 Score=34.34 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=26.6
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
|.++++||.++-+. ......+..++..+. . +.-||++|+.+..+
T Consensus 463 ~~~lilDEp~~gld----------~~~~~~~~~~l~~l~---~--~~~vi~iTH~~~~~ 506 (563)
T TIGR00634 463 VTTLIFDEVDVGVS----------GETAQAIAKKLAQLS---E--RHQVLCVTHLPQVA 506 (563)
T ss_pred CCEEEEECCCCCCC----------HHHHHHHHHHHHHHh---c--CCEEEEEEChHHHH
Confidence 68999999986442 222344445555553 1 34577788876543
No 439
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=48.92 E-value=35 Score=27.34 Aligned_cols=55 Identities=20% Similarity=0.402 Sum_probs=32.2
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.+|++||--+- -+......+..++..+ ....+..+|.+|++...+
T Consensus 168 ~iArAL~~~P~llilDEPts~----------LD~~~~~~i~~lL~~l---~~~~g~tii~itHdl~~v 222 (330)
T PRK15093 168 MIAIALANQPRLLIADEPTNA----------MEPTTQAQIFRLLTRL---NQNNNTTILLISHDLQML 222 (330)
T ss_pred HHHHHHHCCCCEEEEeCCCCc----------CCHHHHHHHHHHHHHH---HHhcCCEEEEEECCHHHH
Confidence 455666778999999995432 2232333344444444 333355678888776544
No 440
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=48.91 E-value=55 Score=24.48 Aligned_cols=52 Identities=23% Similarity=0.371 Sum_probs=30.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
+..|-...|.++++||--+= -+......+..++..+ . . +..+|.+|++++.+
T Consensus 150 la~al~~~p~llllDEP~~g----------LD~~~~~~l~~~l~~~---~-~-g~~vi~~sh~~~~~ 201 (238)
T cd03249 150 IARALLRNPKILLLDEATSA----------LDAESEKLVQEALDRA---M-K-GRTTIVIAHRLSTI 201 (238)
T ss_pred HHHHHhcCCCEEEEeCcccc----------CCHHHHHHHHHHHHHh---c-C-CCEEEEEeCCHHHH
Confidence 44555667999999996542 2222234444444444 2 2 34577777776654
No 441
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=48.74 E-value=44 Score=24.96 Aligned_cols=54 Identities=26% Similarity=0.413 Sum_probs=30.5
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+..|-...|.++++||--+-+ +......+..++..+. .. +..||.+|.+++.+.
T Consensus 153 laral~~~p~llllDEP~~gL----------D~~~~~~~~~~l~~~~---~~-~~tiii~sH~~~~~~ 206 (224)
T cd03220 153 FAIATALEPDILLIDEVLAVG----------DAAFQEKCQRRLRELL---KQ-GKTVILVSHDPSSIK 206 (224)
T ss_pred HHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHHH
Confidence 445556679999999965422 2222333444444432 22 345777777766544
No 442
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=48.73 E-value=40 Score=25.35 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=31.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+-+ +......+..++..+. .. +..+|.+|.+++.+.
T Consensus 147 ~laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-g~tiii~sH~~~~~~ 201 (241)
T PRK10895 147 EIARALAANPKFILLDEPFAGV----------DPISVIDIKRIIEHLR---DS-GLGVLITDHNVRETL 201 (241)
T ss_pred HHHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---hc-CCEEEEEEcCHHHHH
Confidence 4455666789999999955432 2222344444554442 22 345777777765443
No 443
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=48.59 E-value=48 Score=25.55 Aligned_cols=52 Identities=15% Similarity=0.271 Sum_probs=30.0
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
+..|-...|.++++||--+ +-+......+..++..+. . +..+|.+|++++.+
T Consensus 165 laral~~~p~lllLDEPt~----------gLD~~~~~~l~~~l~~~~---~--~~tiiivtH~~~~~ 216 (269)
T PRK14259 165 IARTIAIEPEVILMDEPCS----------ALDPISTLKIEETMHELK---K--NFTIVIVTHNMQQA 216 (269)
T ss_pred HHHHHhcCCCEEEEcCCCc----------cCCHHHHHHHHHHHHHHh---c--CCEEEEEeCCHHHH
Confidence 4455566799999999653 223333344444555543 2 23467777776544
No 444
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=48.58 E-value=52 Score=24.57 Aligned_cols=56 Identities=14% Similarity=0.244 Sum_probs=31.4
Q ss_pred HcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccc
Q 030960 11 ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPAL 76 (168)
Q Consensus 11 ~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al 76 (168)
...|++++|||+-.-. +......+...++..+-. ....+..+|.+|.+.+.+....
T Consensus 106 ~~~~slvllDE~~~gt---------d~~~~~~~~~ail~~l~~-~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 106 ATRRSLVLIDEFGKGT---------DTEDGAGLLIATIEHLLK-RGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CCCCcEEEeccccCCC---------CHHHHHHHHHHHHHHHHh-cCCCCcEEEEEcChHHHHHhhh
Confidence 4579999999976422 111112344444444421 1123456888888887666554
No 445
>PRK10908 cell division protein FtsE; Provisional
Probab=48.51 E-value=44 Score=24.74 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=31.2
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+- -+......+..++..+. .. +..+|.+|++++.+.
T Consensus 147 ~laral~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~~ 201 (222)
T PRK10908 147 GIARAVVNKPAVLLADEPTGN----------LDDALSEGILRLFEEFN---RV-GVTVLMATHDIGLIS 201 (222)
T ss_pred HHHHHHHcCCCEEEEeCCCCc----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 344555667999999995532 22222334444444442 22 345777777766544
No 446
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=48.51 E-value=32 Score=25.87 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=31.0
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+..|-...|.++++||-..= -+......+..++..+ ....+..+|.+|.+++.+.
T Consensus 141 laral~~~p~llllDEP~~~----------LD~~~~~~~~~~l~~~---~~~~~~tvli~sH~~~~~~ 195 (237)
T TIGR00968 141 LARALAVEPQVLLLDEPFGA----------LDAKVRKELRSWLRKL---HDEVHVTTVFVTHDQEEAM 195 (237)
T ss_pred HHHHHhcCCCEEEEcCCccc----------CCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 34444567999999996542 2333334444454444 2222455777777776543
No 447
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=48.49 E-value=44 Score=25.87 Aligned_cols=55 Identities=22% Similarity=0.315 Sum_probs=32.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+- -+......+..++..+ ... +..||.+|++++.+.
T Consensus 147 ~laral~~~p~llllDEPt~g----------LD~~~~~~l~~~l~~l---~~~-~~til~vtH~~~~~~ 201 (275)
T PRK13639 147 AIAGILAMKPEIIVLDEPTSG----------LDPMGASQIMKLLYDL---NKE-GITIIISTHDVDLVP 201 (275)
T ss_pred HHHHHHhcCCCEEEEeCCCcC----------CCHHHHHHHHHHHHHH---HHC-CCEEEEEecCHHHHH
Confidence 455566778999999996532 2233334444444444 222 455777777776544
No 448
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=48.39 E-value=51 Score=24.49 Aligned_cols=52 Identities=17% Similarity=0.348 Sum_probs=30.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
+..|-...|.++++||--+ +-+......+..++..+. .. ..||.+|++++.+
T Consensus 152 la~al~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~---~~--~tii~~sH~~~~~ 203 (227)
T cd03260 152 LARALANEPEVLLLDEPTS----------ALDPISTAKIEELIAELK---KE--YTIVIVTHNMQQA 203 (227)
T ss_pred HHHHHhcCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHHh---hC--cEEEEEeccHHHH
Confidence 4445566799999999543 223333344444554442 22 4577777777654
No 449
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=48.34 E-value=43 Score=25.95 Aligned_cols=55 Identities=29% Similarity=0.354 Sum_probs=32.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+- -+......+..++..+ ... +..+|.+|++++.+.
T Consensus 148 ~laraL~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~~---~~~-g~tili~tH~~~~~~ 202 (274)
T PRK13647 148 AIAGVLAMDPDVIVLDEPMAY----------LDPRGQETLMEILDRL---HNQ-GKTVIVATHDVDLAA 202 (274)
T ss_pred HHHHHHHcCCCEEEEECCCcC----------CCHHHHHHHHHHHHHH---HHC-CCEEEEEeCCHHHHH
Confidence 455666778999999995542 2332334444444444 222 455777887776553
No 450
>PRK10869 recombination and repair protein; Provisional
Probab=48.34 E-value=9.7 Score=32.98 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=25.6
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (168)
.|.++++||+|.-+. ......+..++..+. . +.-||++|..|.
T Consensus 452 ~~~~li~DEpd~gld----------~~~~~~v~~~l~~l~---~--~~qvi~iTH~~~ 494 (553)
T PRK10869 452 ETPALIFDEVDVGIS----------GPTAAVVGKLLRQLG---E--STQVMCVTHLPQ 494 (553)
T ss_pred CCCEEEEECCCCCCC----------HHHHHHHHHHHHHHh---c--CCEEEEEecCHH
Confidence 588999999997442 222344444555553 2 233677777664
No 451
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=48.24 E-value=17 Score=33.14 Aligned_cols=66 Identities=23% Similarity=0.299 Sum_probs=40.4
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCc-----cccCCCCcceEE
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP-----ALLRPGRLDRKI 86 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~-----al~r~grf~~~i 86 (168)
..|.++++||.-..+... .....+..++..+ .+. +..+|.+|.+++++.. ++.. -.+..+
T Consensus 651 ~~p~illlDE~~~~L~d~---------~~~~~i~~~lk~~---RK~-~~~vil~Tq~~~d~~~s~~a~~i~~--~~~t~i 715 (818)
T PRK13830 651 GAPSLIILDEAWLMLGHP---------VFRDKIREWLKVL---RKA-NCAVVLATQSISDAERSGIIDVLKE--SCPTKI 715 (818)
T ss_pred CCCcEEEEECchhhcCCH---------HHHHHHHHHHHHH---HHc-CCEEEEEeCCHHHHhcCchHHHHHh--cCCeEE
Confidence 569999999988776321 1223444444444 233 4567788888877642 3333 467777
Q ss_pred ecCCCC
Q 030960 87 EFPLPD 92 (168)
Q Consensus 87 ~~~~P~ 92 (168)
.++.|.
T Consensus 716 ~L~n~~ 721 (818)
T PRK13830 716 CLPNGA 721 (818)
T ss_pred ECCCcc
Confidence 776665
No 452
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=48.13 E-value=41 Score=25.22 Aligned_cols=53 Identities=13% Similarity=0.329 Sum_probs=29.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
+..|-...|.|+++||--. +-+......+..++..+. +. +..+|.+|.+++.+
T Consensus 148 la~al~~~p~illlDEPt~----------~LD~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~ 200 (237)
T PRK11614 148 IGRALMSQPRLLLLDEPSL----------GLAPIIIQQIFDTIEQLR---EQ-GMTIFLVEQNANQA 200 (237)
T ss_pred HHHHHHhCCCEEEEcCccc----------cCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCcHHHH
Confidence 4445566799999999553 223333344444444442 22 34466677776544
No 453
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=48.07 E-value=46 Score=25.33 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=32.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+-+ +......+..++..+. +. +..+|.+|++++.+.
T Consensus 147 ~la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~~ 201 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTNHL----------DVRAQLETLALVRELA---AT-GVTVVAALHDLNLAA 201 (256)
T ss_pred HHHHHHhcCCCEEEEcCccccC----------CHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHHHHH
Confidence 3455556679999999965422 2223344445555542 22 345777888777653
No 454
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=48.00 E-value=48 Score=25.57 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=31.4
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.|+++||--+- -+......+..++..+. .. +..||.+|++++.+
T Consensus 152 ~laraL~~~p~llllDEPt~~----------LD~~~~~~l~~~L~~~~---~~-g~tviivsH~~~~~ 205 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTG----------VDVKTEARIISLLRELR---DE-GKTMLVSTHNLGSV 205 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCcc----------CCHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHH
Confidence 344555667999999995532 23333344455555442 22 34577777777654
No 455
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=48.00 E-value=76 Score=26.83 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCCeEEEEccccccccc
Q 030960 3 RDVFRLAKENAPAIIFIDEVDAIATA 28 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe~D~l~~~ 28 (168)
..+.+.+++..|.+|+||.+-.+...
T Consensus 160 ~~I~~~i~~~~~~~vVIDSIq~l~~~ 185 (454)
T TIGR00416 160 EQICANIEEENPQACVIDSIQTLYSP 185 (454)
T ss_pred HHHHHHHHhcCCcEEEEecchhhccc
Confidence 45667778889999999999998643
No 456
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=47.92 E-value=37 Score=27.49 Aligned_cols=55 Identities=18% Similarity=0.436 Sum_probs=32.1
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
....|-...|.++++||--+-+ +......+..++..+ .+..+..+|.+|...+.+
T Consensus 150 ~IARAL~~~P~iLLlDEPts~L----------D~~t~~~i~~lL~~l---~~~~g~tiiliTH~~~~v 204 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSAL----------DPATTQSILELLKEI---NRRLGLTILLITHEMDVV 204 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccC----------CHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 3455566789999999965432 222233333444443 333356688888877654
No 457
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=47.89 E-value=50 Score=24.95 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=30.3
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
+..|-...|.|+++||--+ +-+......+..++..+. .. +..||.+|++++.+
T Consensus 162 la~al~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~---~~-g~tii~~tH~~~~~ 214 (252)
T CHL00131 162 ILQMALLDSELAILDETDS----------GLDIDALKIIAEGINKLM---TS-ENSIILITHYQRLL 214 (252)
T ss_pred HHHHHHcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHHH---hC-CCEEEEEecCHHHH
Confidence 4455567799999999543 223333344444544442 22 34577777777643
No 458
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=47.81 E-value=37 Score=27.51 Aligned_cols=55 Identities=13% Similarity=0.265 Sum_probs=31.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+- -+......+..++..+ ....+..+|.+|.+++.+
T Consensus 141 alAraL~~~p~lllLDEPts~----------LD~~~~~~l~~~L~~l---~~~~g~tiiivtH~~~~~ 195 (354)
T TIGR02142 141 AIGRALLSSPRLLLMDEPLAA----------LDDPRKYEILPYLERL---HAEFGIPILYVSHSLQEV 195 (354)
T ss_pred HHHHHHHcCCCEEEEcCCCcC----------CCHHHHHHHHHHHHHH---HHhcCCEEEEEecCHHHH
Confidence 345555677999999995532 2333334444444443 222245577777777654
No 459
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=47.80 E-value=46 Score=26.00 Aligned_cols=55 Identities=25% Similarity=0.407 Sum_probs=32.1
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+ +-+......+..++..+ ... +..||.+|.+++.+.
T Consensus 155 ~laral~~~p~lLlLDEPt~----------gLD~~~~~~l~~~l~~l---~~~-g~tvlivsH~~~~~~ 209 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAA----------GLDPEGRKEMMQLFKDY---QKA-GHTVILVTHNMDDVA 209 (287)
T ss_pred HHHHHHHcCCCEEEEECCCC----------CCCHHHHHHHHHHHHHH---HhC-CCEEEEEeCCHHHHH
Confidence 45566677899999999543 22233334444455444 222 455777777766543
No 460
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.65 E-value=52 Score=29.52 Aligned_cols=46 Identities=24% Similarity=0.316 Sum_probs=27.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEE
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIM 64 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ 64 (168)
..+|--..|+|+++||+=+-+. .+.+.++.+.+..+ .+...|+|||
T Consensus 615 IARALlr~P~VLILDEATSALD----------aeSE~lVq~aL~~~---~~~rTVlvIA 660 (716)
T KOG0058|consen 615 IARALLRNPRVLILDEATSALD----------AESEYLVQEALDRL---MQGRTVLVIA 660 (716)
T ss_pred HHHHHhcCCCEEEEechhhhcc----------hhhHHHHHHHHHHh---hcCCeEEEEe
Confidence 4455566799999999876542 22235555555433 2335666666
No 461
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=47.62 E-value=98 Score=21.85 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=14.8
Q ss_pred HHHHHHHcCCeEEEEccccc
Q 030960 5 VFRLAKENAPAIIFIDEVDA 24 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~ 24 (168)
.+..|-...|.++++||--+
T Consensus 101 ~laral~~~p~~lllDEPt~ 120 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATS 120 (166)
T ss_pred HHHHHHHcCCCEEEEECCcc
Confidence 34555567899999999654
No 462
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=47.56 E-value=44 Score=29.78 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcC
Q 030960 117 PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158 (168)
Q Consensus 117 t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 158 (168)
+-+.|.++|+++++-+-..|.-.....+|.+|.++|++-.+.
T Consensus 604 s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~ 645 (764)
T KOG0480|consen 604 SYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKK 645 (764)
T ss_pred cccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHh
Confidence 447899999999999888887777788999999999986554
No 463
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=47.55 E-value=47 Score=25.12 Aligned_cols=55 Identities=13% Similarity=0.275 Sum_probs=32.4
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCc
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP 74 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~ 74 (168)
.+..|-...|.|+++||--+- -+......+..++..+. + +..+|.+|+++..+..
T Consensus 156 ~laral~~~p~llllDEP~~g----------LD~~~~~~l~~~l~~~~---~--~~tiii~sh~~~~~~~ 210 (250)
T PRK14266 156 CIARTIAVSPEVILMDEPCSA----------LDPISTTKIEDLIHKLK---E--DYTIVIVTHNMQQATR 210 (250)
T ss_pred HHHHHHHcCCCEEEEcCCCcc----------CCHHHHHHHHHHHHHHh---c--CCeEEEEECCHHHHHh
Confidence 345555678999999995542 22233344555555542 2 3457777777765543
No 464
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=47.44 E-value=34 Score=26.18 Aligned_cols=55 Identities=11% Similarity=0.174 Sum_probs=30.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+..|-...|.|+++||--+= -+......+..++..+. ...+..+|.+|.+++.+.
T Consensus 161 laral~~~p~vllLDEP~~~----------LD~~~~~~l~~~l~~l~---~~~~~tiiivsH~~~~i~ 215 (261)
T PRK14258 161 IARALAVKPKVLLMDEPCFG----------LDPIASMKVESLIQSLR---LRSELTMVIVSHNLHQVS 215 (261)
T ss_pred HHHHHhcCCCEEEEeCCCcc----------CCHHHHHHHHHHHHHHH---HhCCCEEEEEECCHHHHH
Confidence 44455667999999996542 22223344444444432 122345777778777654
No 465
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=47.43 E-value=48 Score=25.13 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=30.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+..|-...|.|+++||--+= -+......+..++..+. . +..||.+|++++.+.
T Consensus 160 laral~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~~~---~--~~tvii~tH~~~~~~ 212 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASA----------LDPIATQKIEELIHELK---A--RYTIIIVTHNMQQAA 212 (253)
T ss_pred HHHHHhcCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHh---c--CCeEEEEEecHHHHH
Confidence 44455667999999996542 22233344444555542 2 245777777776553
No 466
>COG3196 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.27 E-value=65 Score=22.98 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=12.5
Q ss_pred CHHHHHhCCCCCCHHH
Q 030960 109 DLEDYVSRPDKISAAE 124 (168)
Q Consensus 109 ~~~~la~~t~g~s~~d 124 (168)
-+.++.++|+||++-+
T Consensus 88 ~~~Ev~ERTPGYtgWQ 103 (183)
T COG3196 88 VTEEVLERTPGYTGWQ 103 (183)
T ss_pred HHHHHHhcCCCcchhH
Confidence 3577899999999843
No 467
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=47.26 E-value=49 Score=25.04 Aligned_cols=54 Identities=15% Similarity=0.313 Sum_probs=31.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+= -+......+..++..+. . +..+|.+|++++.+.
T Consensus 156 ~laral~~~p~lllLDEPt~~----------LD~~~~~~l~~~l~~~~---~--~~tiiivtH~~~~~~ 209 (250)
T PRK14245 156 CIARAMAVSPSVLLMDEPASA----------LDPISTAKVEELIHELK---K--DYTIVIVTHNMQQAA 209 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCcc----------CCHHHHHHHHHHHHHHh---c--CCeEEEEeCCHHHHH
Confidence 345555677999999995532 23333344555555542 2 234677777766553
No 468
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=47.20 E-value=40 Score=25.35 Aligned_cols=55 Identities=13% Similarity=0.328 Sum_probs=31.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||-.+-+ +......+..++..+. .. +..+|.+|.+++.+.
T Consensus 146 ~la~al~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~~ 200 (240)
T PRK09493 146 AIARALAVKPKLMLFDEPTSAL----------DPELRHEVLKVMQDLA---EE-GMTMVIVTHEIGFAE 200 (240)
T ss_pred HHHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHH
Confidence 3455556779999999966432 2223344444554442 22 345777777776553
No 469
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=47.08 E-value=40 Score=23.30 Aligned_cols=24 Identities=4% Similarity=0.220 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCCeEEEEccccccc
Q 030960 3 RDVFRLAKENAPAIIFIDEVDAIA 26 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe~D~l~ 26 (168)
+.+.+.++.....+|++-++|.|+
T Consensus 58 ~~ll~~~~~g~vd~vvv~~ldRl~ 81 (140)
T cd03770 58 NRMIEDIEAGKIDIVIVKDMSRLG 81 (140)
T ss_pred HHHHHHHHcCCCCEEEEeccchhc
Confidence 344455555555566666666664
No 470
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=47.07 E-value=37 Score=28.52 Aligned_cols=46 Identities=22% Similarity=0.319 Sum_probs=27.2
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCC-CCCCCc
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR-ADTLDP 74 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~-~~~ld~ 74 (168)
-++|.+||+-.- +-.-.-+++.+.+.|= +++|+++||+|+ |++|..
T Consensus 194 a~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYk 240 (467)
T KOG2383|consen 194 AILLCFDEFQVT-----------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYK 240 (467)
T ss_pred ceeeeechhhhh-----------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhh
Confidence 477778887532 1111244455555542 348999999998 555554
No 471
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=46.84 E-value=68 Score=23.43 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=30.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+=+ +......+..++..+ .. +..+|.+|++++.+
T Consensus 135 ~laral~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~---~~--~~tiii~th~~~~~ 187 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASI----------DYATDALIQKTIREE---FT--NSTILTIAHRLRTI 187 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccC----------CHHHHHHHHHHHHHh---cC--CCEEEEEeCCHHHH
Confidence 3455556679999999965422 222233344444443 22 34566777776654
No 472
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=46.83 E-value=39 Score=25.79 Aligned_cols=55 Identities=11% Similarity=0.168 Sum_probs=30.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+-+ +......+..++..+ ....+..+|.+|++.+.+
T Consensus 125 ~iaraL~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~---~~~~~~tiiivsHd~~~~ 179 (246)
T cd03237 125 AIAACLSKDADIYLLDEPSAYL----------DVEQRLMASKVIRRF---AENNEKTAFVVEHDIIMI 179 (246)
T ss_pred HHHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 3455556779999999965433 222233344444443 222244577777776544
No 473
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=46.81 E-value=46 Score=25.81 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=31.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+ +-+......+..++..+ .+..+..+|.+|++++.+.
T Consensus 150 ~lAraL~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~l---~~~~g~tiil~sH~~~~~~ 205 (277)
T PRK13642 150 AVAGIIALRPEIIILDESTS----------MLDPTGRQEIMRVIHEI---KEKYQLTVLSITHDLDEAA 205 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 44555667899999999543 22333334444444444 2332445677777776653
No 474
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=46.75 E-value=28 Score=27.19 Aligned_cols=85 Identities=14% Similarity=0.174 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCc-
Q 030960 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRL- 82 (168)
Q Consensus 4 ~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf- 82 (168)
-+..+|-.++|-|+++||==+.+ +- +-.-+++..+..+.+..+..+|+++..+ +-|++-..++
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~L----------Di---~~Q~evl~ll~~l~~~~~~tvv~vlHDl---N~A~ryad~~i 210 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHL----------DI---AHQIEVLELLRDLNREKGLTVVMVLHDL---NLAARYADHLI 210 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCcccc----------CH---HHHHHHHHHHHHHHHhcCCEEEEEecCH---HHHHHhCCEEE
Confidence 45677788899999999943332 11 1112234444444555566677776544 3444321110
Q ss_pred ----ceEEecCCCCHHHHHHHHHhhc
Q 030960 83 ----DRKIEFPLPDRRQKRLVFQMNL 104 (168)
Q Consensus 83 ----~~~i~~~~P~~~~R~~il~~~l 104 (168)
+..+..+.|..---.+.++..+
T Consensus 211 ~lk~G~i~a~G~p~evlT~e~l~~Vy 236 (258)
T COG1120 211 LLKDGKIVAQGTPEEVLTEENLREVY 236 (258)
T ss_pred EEECCeEEeecCcchhcCHHHHHHHh
Confidence 2344556665544444454333
No 475
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.71 E-value=31 Score=25.82 Aligned_cols=55 Identities=15% Similarity=0.291 Sum_probs=31.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||-..= -+......+..++..+. +..+..+|.+|++++.+
T Consensus 140 ~laral~~~p~llllDEP~~g----------LD~~~~~~l~~~l~~~~---~~~~~tiii~sh~~~~~ 194 (232)
T cd03300 140 AIARALVNEPKVLLLDEPLGA----------LDLKLRKDMQLELKRLQ---KELGITFVFVTHDQEEA 194 (232)
T ss_pred HHHHHHhcCCCEEEEcCCccc----------CCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHH
Confidence 345555677999999996642 33333344444444442 22244567777766654
No 476
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.64 E-value=57 Score=24.67 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=29.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
+..|-...|.++++||--+=+ +......+..++..+. . +..+|.+|.+++.+
T Consensus 157 laral~~~p~lllLDEP~~~L----------D~~~~~~l~~~l~~~~---~--~~tiii~sH~~~~~ 208 (250)
T PRK14247 157 IARALAFQPEVLLADEPTANL----------DPENTAKIESLFLELK---K--DMTIVLVTHFPQQA 208 (250)
T ss_pred HHHHHhcCCCEEEEcCCCccC----------CHHHHHHHHHHHHHHh---c--CCEEEEEeCCHHHH
Confidence 444556679999999965422 2223344444444442 2 24577777776644
No 477
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.58 E-value=50 Score=25.75 Aligned_cols=54 Identities=13% Similarity=0.289 Sum_probs=31.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+- -+......+..++..+. . +..||.+|++++.+.
T Consensus 192 ~LAraL~~~p~lllLDEPt~g----------LD~~~~~~l~~~L~~~~---~--~~tvIivsH~~~~~~ 245 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSA----------LDPKATAKIEDLIQELR---G--SYTIMIVTHNMQQAS 245 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCcc----------CCHHHHHHHHHHHHHHh---c--CCeEEEEeCCHHHHH
Confidence 345555677999999995532 23333344445555543 2 235777777776553
No 478
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=46.57 E-value=37 Score=28.93 Aligned_cols=56 Identities=11% Similarity=0.317 Sum_probs=31.4
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+-+ +......+..++..+ ....+..||.+|++++.+.
T Consensus 178 ~iA~al~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~l---~~~~g~tviivtHd~~~~~ 233 (520)
T TIGR03269 178 VLARQLAKEPFLFLADEPTGTL----------DPQTAKLVHNALEEA---VKASGISMVLTSHWPEVIE 233 (520)
T ss_pred HHHHHHhcCCCEEEeeCCcccC----------CHHHHHHHHHHHHHH---HHhcCcEEEEEeCCHHHHH
Confidence 4556667789999999954322 222233333344433 2222445777777766543
No 479
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=46.28 E-value=41 Score=27.19 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=38.8
Q ss_pred HHHHHcCCeEEEEcccccccccccCCC-C--CcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 7 RLAKENAPAIIFIDEVDAIATARFDAQ-T--GADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 7 ~~a~~~~p~ii~iDe~D~l~~~~~~~~-~--~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
..++...+.+|+||-+-++.+...-.. . .......+.++.++..|..+....++.+|.|...-+.+
T Consensus 127 ~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~i 195 (325)
T cd00983 127 SLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQLREKI 195 (325)
T ss_pred HHHhccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcccccc
Confidence 344566799999999999986421111 1 11112235556666666555455677777776544444
No 480
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.22 E-value=50 Score=25.03 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=31.2
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+- -+......+..++..+. .. ..+|.+|++++.+.
T Consensus 158 ~laral~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~~~---~~--~tii~vsH~~~~~~ 211 (252)
T PRK14255 158 CIARVLAVKPDVILLDEPTSA----------LDPISSTQIENMLLELR---DQ--YTIILVTHSMHQAS 211 (252)
T ss_pred HHHHHHhcCCCEEEEcCCCcc----------CCHHHHHHHHHHHHHHH---hC--CEEEEEECCHHHHH
Confidence 344555667999999996542 22333344445555543 21 35777777766543
No 481
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=45.97 E-value=23 Score=28.35 Aligned_cols=55 Identities=22% Similarity=0.372 Sum_probs=31.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.+|++||--+- -+...+..+..++..+ ....+..+|.+|.+...+
T Consensus 163 ~iArAL~~~P~llilDEPts~----------LD~~~~~~il~lL~~l---~~~~g~til~iTHdl~~~ 217 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTA----------LDVTIQAQIIELLLEL---QQKENMALVLITHDLALV 217 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 455566778999999995543 2222233333333333 333355678888776654
No 482
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=45.94 E-value=50 Score=25.19 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=31.2
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.|+++||--+= -+......+..++..+. + +..+|.+|++++.+.
T Consensus 164 ~laral~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~l~---~--~~tiiivsH~~~~~~ 217 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSA----------LDPISTARIEDLIMNLK---K--DYTIVIVTHNMQQAA 217 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcc----------cCHHHHHHHHHHHHHHh---h--CCEEEEEECCHHHHH
Confidence 344555667999999996542 22333344444554442 2 245777777766543
No 483
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=45.94 E-value=33 Score=31.42 Aligned_cols=69 Identities=23% Similarity=0.281 Sum_probs=40.7
Q ss_pred HHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcc-----ccCCCCcc
Q 030960 9 AKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPA-----LLRPGRLD 83 (168)
Q Consensus 9 a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~a-----l~r~grf~ 83 (168)
+-...|.++++||.-..+... .....+..++..+ .+. +..++.+|.+++++... ++. -.+
T Consensus 683 ~l~~~p~illlDE~w~~L~d~---------~~~~~i~~~lk~~---RK~-g~~vil~TQs~~d~~~s~i~~~ile--n~~ 747 (852)
T PRK13891 683 ALKGQPAVIILDEAWLMLGHP---------AFRAKIREWLKVL---RKA-NCLVLMATQSLSDAANSGILDVIVE--STA 747 (852)
T ss_pred HhcCCCCEEEEeCchhhcCCH---------HHHHHHHHHHHHH---Hhc-CCEEEEEeCCHHHHhhCchHHHHHH--cCC
Confidence 335679999999988766321 1223444444444 333 44567777887776542 222 355
Q ss_pred eEEecCCCC
Q 030960 84 RKIEFPLPD 92 (168)
Q Consensus 84 ~~i~~~~P~ 92 (168)
..|.++.|.
T Consensus 748 t~I~Lpn~~ 756 (852)
T PRK13891 748 TKIFLPNVY 756 (852)
T ss_pred cceecCCCc
Confidence 677777774
No 484
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=45.88 E-value=54 Score=24.80 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=29.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
+..|-...|.++++||--+- -+......+..++..+. . +..+|.+|++++.+
T Consensus 159 laral~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~~~---~--~~tii~~sH~~~~~ 210 (252)
T PRK14239 159 IARVLATSPKIILLDEPTSA----------LDPISAGKIEETLLGLK---D--DYTMLLVTRSMQQA 210 (252)
T ss_pred HHHHHhcCCCEEEEcCCccc----------cCHHHHHHHHHHHHHHh---h--CCeEEEEECCHHHH
Confidence 44455667999999995532 22333344445555542 2 13477777766543
No 485
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=45.84 E-value=29 Score=26.40 Aligned_cols=66 Identities=29% Similarity=0.374 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcc
Q 030960 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLD 83 (168)
Q Consensus 4 ~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~ 83 (168)
+.-...+..+|.+|++|. ..++.+ + -.|+..+-.-.....|++|-+++..+-+-.+++ -|-||
T Consensus 37 ea~~~i~~~~pDLILLDi---YmPd~~----G---------i~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr-~Gv~D 99 (224)
T COG4565 37 EAKMIIEEFKPDLILLDI---YMPDGN----G---------IELLPELRSQHYPVDVIVITAASDMETIKEALR-YGVVD 99 (224)
T ss_pred HHHHHHHhhCCCEEEEee---ccCCCc----c---------HHHHHHHHhcCCCCCEEEEeccchHHHHHHHHh-cCchh
Confidence 344455677899999875 343321 1 125555554344567999999999999998886 48888
Q ss_pred eEE
Q 030960 84 RKI 86 (168)
Q Consensus 84 ~~i 86 (168)
..|
T Consensus 100 YLi 102 (224)
T COG4565 100 YLI 102 (224)
T ss_pred hee
Confidence 776
No 486
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=45.82 E-value=54 Score=25.00 Aligned_cols=53 Identities=17% Similarity=0.325 Sum_probs=30.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+..|-...|.++++||--+-+ +......+..++..+. . +..+|.+|++++.+.
T Consensus 166 laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~--~~tiiivtH~~~~~~ 218 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSAL----------DPVSTRKIEELILKLK---E--KYTIVIVTHNMQQAA 218 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHh---c--CCEEEEEEcCHHHHH
Confidence 445556679999999965432 2223344445555542 2 245777777766543
No 487
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=45.82 E-value=17 Score=28.12 Aligned_cols=67 Identities=24% Similarity=0.422 Sum_probs=42.3
Q ss_pred HHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCc
Q 030960 7 RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP 74 (168)
Q Consensus 7 ~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~ 74 (168)
.........+|+||-+-.++...-... +......+.+..++..|..+....++.||.|..-....+.
T Consensus 127 ~~l~~~~ikLIVIDSIaalfr~e~~~~-~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~~ 193 (256)
T PF08423_consen 127 KLLSESKIKLIVIDSIAALFRSEFSGR-GDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKIDS 193 (256)
T ss_dssp HHHHHSCEEEEEEETSSHHHHHHSGST-TTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT-
T ss_pred hhccccceEEEEecchHHHHHHHHccc-hhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCCc
Confidence 334456789999999999986432111 1222334677777777777766778888877665655554
No 488
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=45.69 E-value=51 Score=26.65 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=34.5
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCc
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP 74 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~ 74 (168)
+..|-.+.|.++++||--+ +-+......+..++..+. .. +..||.+|++.+.+..
T Consensus 183 lA~aL~~~P~lLiLDEPt~----------gLD~~~r~~l~~~l~~l~---~~-g~tilisSH~l~e~~~ 237 (340)
T PRK13536 183 LARALINDPQLLILDEPTT----------GLDPHARHLIWERLRSLL---AR-GKTILLTTHFMEEAER 237 (340)
T ss_pred HHHHHhcCCCEEEEECCCC----------CCCHHHHHHHHHHHHHHH---hC-CCEEEEECCCHHHHHH
Confidence 4455567899999999443 334444455555555553 22 4568888888876643
No 489
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=45.68 E-value=45 Score=25.65 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=31.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.+|++||--+-+ +......+..++..+. . +..+|.+|.+++.+.
T Consensus 173 ~laral~~~p~lllLDEPt~~L----------D~~~~~~l~~~L~~l~---~--~~tiiivtH~~~~~~ 226 (267)
T PRK14235 173 CIARAIAVSPEVILMDEPCSAL----------DPIATAKVEELIDELR---Q--NYTIVIVTHSMQQAA 226 (267)
T ss_pred HHHHHHHcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHh---c--CCeEEEEEcCHHHHH
Confidence 3445556789999999965432 2333344455555542 2 235777777766553
No 490
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=45.64 E-value=53 Score=25.35 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=31.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.|+++||--.- -+......+..++..+. + +..+|.+|++++.+.
T Consensus 178 ~laral~~~p~lllLDEPt~g----------LD~~~~~~l~~~L~~~~---~--~~tiiivtH~~~~~~ 231 (272)
T PRK14236 178 VIARAIAIEPEVLLLDEPTSA----------LDPISTLKIEELITELK---S--KYTIVIVTHNMQQAA 231 (272)
T ss_pred HHHHHHHCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHH---h--CCeEEEEeCCHHHHH
Confidence 345555668999999995542 22333344445555442 2 235777777776543
No 491
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=45.61 E-value=40 Score=28.80 Aligned_cols=55 Identities=22% Similarity=0.406 Sum_probs=31.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+- -+......+..++..+. ...+..||.+|++++.+
T Consensus 166 ~iAraL~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~l~---~~~g~tvi~vtHd~~~~ 220 (529)
T PRK15134 166 MIAMALLTRPELLIADEPTTA----------LDVSVQAQILQLLRELQ---QELNMGLLFITHNLSIV 220 (529)
T ss_pred HHHHHHhcCCCEEEEcCCCCc----------cCHHHHHHHHHHHHHHH---HhcCCeEEEEcCcHHHH
Confidence 455566778999999995432 23333344444444442 22234577777777654
No 492
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=45.47 E-value=62 Score=23.61 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=30.1
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--. +-+......+..++..+. +. +..+|.+|++++.+
T Consensus 114 ~laral~~~p~illlDEPt~----------~LD~~~~~~l~~~L~~~~---~~-~~tiii~sh~~~~~ 167 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDS----------GLDIDALRLVAEVINKLR---EE-GKSVLIITHYQRLL 167 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHH
Confidence 34555667899999999543 222223344444444442 22 34566677766643
No 493
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=45.41 E-value=70 Score=22.07 Aligned_cols=50 Identities=22% Similarity=0.235 Sum_probs=28.5
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
+..|-...|.++++||-..=+ +......+..++..+ . ..++.+|+.++.+
T Consensus 81 laral~~~p~illlDEP~~~L----------D~~~~~~l~~~l~~~---~----~til~~th~~~~~ 130 (144)
T cd03221 81 LAKLLLENPNLLLLDEPTNHL----------DLESIEALEEALKEY---P----GTVILVSHDRYFL 130 (144)
T ss_pred HHHHHhcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHc---C----CEEEEEECCHHHH
Confidence 344556679999999966432 222233444444443 1 2467777776544
No 494
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=45.41 E-value=54 Score=23.79 Aligned_cols=54 Identities=13% Similarity=0.125 Sum_probs=28.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
+..|-...|.++++||--+- -+......+..++..+ ....+..+|.+|++.+.+
T Consensus 82 laral~~~p~lllLDEPts~----------LD~~~~~~l~~~l~~~---~~~~~~tiiivsH~~~~~ 135 (177)
T cd03222 82 IAAALLRNATFYLFDEPSAY----------LDIEQRLNAARAIRRL---SEEGKKTALVVEHDLAVL 135 (177)
T ss_pred HHHHHhcCCCEEEEECCccc----------CCHHHHHHHHHHHHHH---HHcCCCEEEEEECCHHHH
Confidence 34455667999999995432 2222233333344333 222224466677766544
No 495
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=45.40 E-value=58 Score=24.60 Aligned_cols=54 Identities=17% Similarity=0.291 Sum_probs=32.1
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+= -+......+..++..+. . +..+|.+|++++.+.
T Consensus 158 ~laral~~~p~llllDEP~~~----------LD~~~~~~l~~~l~~~~---~--~~tiii~sH~~~~~~ 211 (252)
T PRK14272 158 CIARALAVEPEILLMDEPTSA----------LDPASTARIEDLMTDLK---K--VTTIIIVTHNMHQAA 211 (252)
T ss_pred HHHHHHhcCCCEEEEeCCCcc----------CCHHHHHHHHHHHHHHh---c--CCeEEEEeCCHHHHH
Confidence 345556677999999995542 22333345555555553 2 245777777776554
No 496
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.91 E-value=39 Score=25.40 Aligned_cols=56 Identities=21% Similarity=0.226 Sum_probs=32.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+ +-+......+..++..+. ...+..+|.+|++++.+.
T Consensus 139 ~laral~~~p~llllDEPt~----------gLD~~~~~~l~~~l~~~~---~~~~~tili~tH~~~~~~ 194 (235)
T cd03299 139 AIARALVVNPKILLLDEPFS----------ALDVRTKEKLREELKKIR---KEFGVTVLHVTHDFEEAW 194 (235)
T ss_pred HHHHHHHcCCCEEEECCCcc----------cCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHHH
Confidence 45556677899999999553 233333344555555442 222445777777666543
No 497
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=44.60 E-value=70 Score=23.70 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=29.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
+..|-...|.++++||--.-+ +......+..++..+. . +..+|.+|++++.+
T Consensus 161 laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 212 (226)
T cd03248 161 IARALIRNPQVLILDEATSAL----------DAESEQQVQQALYDWP---E--RRTVLVIAHRLSTV 212 (226)
T ss_pred HHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHc---C--CCEEEEEECCHHHH
Confidence 444556679999999955422 2223344444444443 2 24577777776654
No 498
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=44.58 E-value=48 Score=25.11 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=30.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+= -+......+..++..+. +. ..+|.+|++++.+.
T Consensus 158 ~laral~~~p~llllDEP~~g----------LD~~~~~~l~~~l~~~~---~~--~tiiivsH~~~~~~ 211 (252)
T PRK14256 158 CIARTIAVKPEVILMDEPASA----------LDPISTLKIEELIEELK---EK--YTIIIVTHNMQQAA 211 (252)
T ss_pred HHHHHHhcCCCEEEEcCCccc----------CCHHHHHHHHHHHHHHH---hC--CcEEEEECCHHHHH
Confidence 345555667999999995532 22233344444555552 21 34777777766554
No 499
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=44.55 E-value=52 Score=25.87 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=32.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||--+ +-+......+..++..+. .. +..||.+|++++.+.
T Consensus 145 ~la~al~~~p~lllLDEPt~----------gLD~~~~~~l~~~l~~~~---~~-g~til~~sH~~~~~~ 199 (303)
T TIGR01288 145 TLARALINDPQLLILDEPTT----------GLDPHARHLIWERLRSLL---AR-GKTILLTTHFMEEAE 199 (303)
T ss_pred HHHHHHhcCCCEEEEeCCCc----------CCCHHHHHHHHHHHHHHH---hC-CCEEEEECCCHHHHH
Confidence 34555567899999999443 333333344444554442 22 456888888876553
No 500
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=44.39 E-value=12 Score=31.68 Aligned_cols=51 Identities=18% Similarity=0.345 Sum_probs=32.5
Q ss_pred HHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 10 KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 10 ~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
-+..|.++++||+++.+..- ...++... +..+...-++.+++.|++|+-++
T Consensus 522 laerpn~~~iDEF~AhLD~~---------TA~rVArk----iselaRe~giTlivvThrpEv~~ 572 (593)
T COG2401 522 LAERPNVLLIDEFAAHLDEL---------TAVRVARK----ISELAREAGITLIVVTHRPEVGN 572 (593)
T ss_pred HhcCCCcEEhhhhhhhcCHH---------HHHHHHHH----HHHHHHHhCCeEEEEecCHHHHh
Confidence 35669999999999987221 12233332 33333444677999999988655
Done!