Query 030960
Match_columns 168
No_of_seqs 149 out of 1222
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 11:06:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 3.2E-41 1.1E-45 272.2 17.4 158 2-159 230-392 (405)
2 4b4t_M 26S protease regulatory 100.0 9.8E-41 3.4E-45 272.4 18.3 166 2-167 263-433 (434)
3 4b4t_I 26S protease regulatory 100.0 5.7E-40 2E-44 266.0 17.3 164 2-165 264-433 (437)
4 4b4t_L 26S protease subunit RP 100.0 1.8E-39 6.3E-44 265.1 18.6 167 2-168 263-436 (437)
5 4b4t_K 26S protease regulatory 100.0 1.8E-39 6.2E-44 264.7 17.5 167 2-168 254-428 (428)
6 4b4t_H 26S protease regulatory 100.0 1.5E-38 5.3E-43 259.7 17.4 157 2-158 291-452 (467)
7 3cf2_A TER ATPase, transitiona 100.0 1E-37 3.5E-42 270.0 5.0 166 2-167 559-755 (806)
8 3cf2_A TER ATPase, transitiona 100.0 2.1E-32 7.3E-37 236.9 16.0 158 2-162 286-465 (806)
9 2x8a_A Nuclear valosin-contain 100.0 1.3E-29 4.4E-34 196.5 16.5 157 2-161 92-269 (274)
10 2ce7_A Cell division protein F 100.0 2.5E-28 8.6E-33 201.7 17.8 158 2-159 97-259 (476)
11 3cf0_A Transitional endoplasmi 100.0 3E-28 1E-32 190.8 14.9 159 2-160 97-285 (301)
12 1lv7_A FTSH; alpha/beta domain 100.0 1.2E-26 4E-31 177.5 20.1 158 2-159 93-255 (257)
13 1xwi_A SKD1 protein; VPS4B, AA 99.9 5.3E-27 1.8E-31 185.5 15.7 154 2-160 94-303 (322)
14 3h4m_A Proteasome-activating n 99.9 3.6E-26 1.2E-30 176.9 17.4 166 2-167 99-276 (285)
15 2dhr_A FTSH; AAA+ protein, hex 99.9 2.3E-26 7.9E-31 190.9 15.9 159 2-160 112-275 (499)
16 3eie_A Vacuolar protein sortin 99.9 5.9E-27 2E-31 185.0 10.9 159 2-165 99-308 (322)
17 1ixz_A ATP-dependent metallopr 99.9 1.2E-25 4.1E-30 171.6 16.5 152 2-153 97-253 (254)
18 2qp9_X Vacuolar protein sortin 99.9 4.6E-26 1.6E-30 182.3 13.6 155 2-161 132-336 (355)
19 2zan_A Vacuolar protein sortin 99.9 1.8E-25 6.3E-30 183.6 14.5 154 2-160 216-425 (444)
20 3hu3_A Transitional endoplasmi 99.9 3.2E-25 1.1E-29 184.0 15.4 156 2-160 286-463 (489)
21 1iy2_A ATP-dependent metallopr 99.9 1.8E-24 6E-29 167.4 16.8 152 2-153 121-277 (278)
22 1ypw_A Transitional endoplasmi 99.9 1.4E-27 4.9E-32 208.2 -1.8 159 2-160 559-747 (806)
23 2qz4_A Paraplegin; AAA+, SPG7, 99.9 2.2E-25 7.4E-30 170.2 9.7 159 2-160 87-253 (262)
24 2r62_A Cell division protease 99.9 1.2E-25 4E-30 172.7 2.4 163 3-165 93-262 (268)
25 3d8b_A Fidgetin-like protein 1 99.9 1.1E-22 3.7E-27 162.8 13.2 154 2-160 165-338 (357)
26 3b9p_A CG5977-PA, isoform A; A 99.9 1.2E-22 4.2E-27 157.9 11.1 154 2-160 102-276 (297)
27 3vfd_A Spastin; ATPase, microt 99.9 1.2E-21 4.1E-26 158.2 12.4 154 2-160 196-369 (389)
28 1ypw_A Transitional endoplasmi 99.8 1.5E-18 5.2E-23 151.4 18.6 156 2-160 286-463 (806)
29 3t15_A Ribulose bisphosphate c 99.8 1.2E-19 4E-24 141.6 5.0 123 2-127 84-222 (293)
30 2krk_A 26S protease regulatory 99.7 4.9E-17 1.7E-21 104.7 9.3 74 87-160 7-85 (86)
31 3kw6_A 26S protease regulatory 99.7 8.4E-17 2.9E-21 101.8 9.2 71 89-159 1-76 (78)
32 3aji_B S6C, proteasome (prosom 99.7 1E-16 3.5E-21 102.6 7.6 77 92-168 2-83 (83)
33 3vlf_B 26S protease regulatory 99.6 2.5E-15 8.6E-20 97.1 8.2 69 92-160 2-75 (88)
34 2dzn_B 26S protease regulatory 99.6 2.7E-15 9.3E-20 95.7 5.3 75 94-168 1-82 (82)
35 2c9o_A RUVB-like 1; hexameric 99.5 3.2E-17 1.1E-21 134.9 -10.0 126 2-131 112-262 (456)
36 3uk6_A RUVB-like 2; hexameric 99.3 4.1E-12 1.4E-16 101.0 9.4 125 14-157 190-331 (368)
37 1d2n_A N-ethylmaleimide-sensit 99.3 6.7E-12 2.3E-16 96.2 9.2 148 2-160 113-268 (272)
38 3m6a_A ATP-dependent protease 99.3 1.2E-12 4.3E-17 109.8 4.0 142 3-158 166-343 (543)
39 3syl_A Protein CBBX; photosynt 99.2 1.3E-11 4.3E-16 95.9 6.7 125 3-139 123-265 (309)
40 2v1u_A Cell division control p 99.2 1E-10 3.6E-15 92.8 11.3 142 4-157 120-277 (387)
41 3pfi_A Holliday junction ATP-d 99.2 3.6E-10 1.2E-14 88.8 12.4 130 12-158 105-256 (338)
42 1ofh_A ATP-dependent HSL prote 99.1 1.2E-10 4.1E-15 90.0 8.3 142 13-158 116-301 (310)
43 2z4s_A Chromosomal replication 99.1 2.8E-10 9.6E-15 93.2 8.3 130 13-158 194-334 (440)
44 1hqc_A RUVB; extended AAA-ATPa 99.1 5.6E-10 1.9E-14 87.0 9.7 129 12-157 89-239 (324)
45 1r6b_X CLPA protein; AAA+, N-t 99.1 4.2E-10 1.4E-14 97.6 9.5 145 2-158 267-435 (758)
46 1njg_A DNA polymerase III subu 99.0 8.5E-10 2.9E-14 81.4 8.6 117 13-153 126-248 (250)
47 3bos_A Putative DNA replicatio 99.0 3.5E-10 1.2E-14 84.1 5.6 126 13-154 104-241 (242)
48 2chg_A Replication factor C sm 99.0 1.7E-09 5.7E-14 79.0 8.2 118 12-154 101-224 (226)
49 2qby_A CDC6 homolog 1, cell di 99.0 1.6E-09 5.5E-14 85.8 8.5 142 3-157 117-273 (386)
50 2r44_A Uncharacterized protein 99.0 8.9E-09 3E-13 80.8 12.2 128 15-158 111-299 (331)
51 1g8p_A Magnesium-chelatase 38 98.9 9.3E-09 3.2E-13 80.8 11.7 128 14-157 145-323 (350)
52 1g41_A Heat shock protein HSLU 98.9 7.1E-11 2.4E-15 96.6 -1.3 87 2-100 100-188 (444)
53 2qby_B CDC6 homolog 3, cell di 98.9 3E-09 1E-13 84.6 7.6 133 4-157 125-271 (384)
54 1fnn_A CDC6P, cell division co 98.9 5.9E-09 2E-13 82.8 8.7 131 12-158 124-276 (389)
55 3hws_A ATP-dependent CLP prote 98.9 5.9E-09 2E-13 83.0 8.5 149 3-153 102-346 (363)
56 3pvs_A Replication-associated 98.7 1.2E-08 4.2E-13 83.6 6.3 136 2-159 91-247 (447)
57 4fcw_A Chaperone protein CLPB; 98.7 2.3E-08 7.8E-13 77.4 6.8 115 8-138 114-280 (311)
58 1l8q_A Chromosomal replication 98.7 1E-08 3.5E-13 80.2 4.4 128 13-157 98-241 (324)
59 2c9o_A RUVB-like 1; hexameric 98.7 6.6E-08 2.3E-12 79.3 9.1 124 14-157 296-438 (456)
60 1jbk_A CLPB protein; beta barr 98.7 1.3E-08 4.3E-13 72.6 4.2 87 2-101 103-195 (195)
61 3u61_B DNA polymerase accessor 98.7 2.1E-08 7.2E-13 78.3 5.7 117 13-154 105-235 (324)
62 1jr3_A DNA polymerase III subu 98.7 2E-07 6.9E-12 73.7 10.9 129 2-154 104-242 (373)
63 3f9v_A Minichromosome maintena 98.7 9.4E-08 3.2E-12 81.0 9.4 127 14-157 392-588 (595)
64 1in4_A RUVB, holliday junction 98.7 3.5E-07 1.2E-11 72.0 12.1 96 59-157 150-251 (334)
65 1qvr_A CLPB protein; coiled co 98.6 7.2E-08 2.5E-12 84.7 8.2 125 2-139 251-395 (854)
66 3pxi_A Negative regulator of g 98.6 4.4E-07 1.5E-11 78.8 12.5 111 2-137 256-386 (758)
67 3nbx_X ATPase RAVA; AAA+ ATPas 98.6 1.9E-07 6.4E-12 77.6 9.5 126 13-155 109-284 (500)
68 1sxj_D Activator 1 41 kDa subu 98.6 2.1E-07 7.3E-12 73.0 9.0 122 13-154 133-261 (353)
69 3pxg_A Negative regulator of g 98.6 1.6E-07 5.6E-12 77.3 8.2 129 2-155 256-405 (468)
70 3pxi_A Negative regulator of g 98.5 1.5E-07 5.2E-12 81.7 7.7 117 6-138 572-726 (758)
71 2chq_A Replication factor C sm 98.5 4.3E-07 1.5E-11 70.1 8.8 118 12-154 101-224 (319)
72 1sxj_B Activator 1 37 kDa subu 98.5 6.9E-07 2.4E-11 69.0 9.3 118 13-155 107-230 (323)
73 1w5s_A Origin recognition comp 98.5 3.6E-07 1.2E-11 73.1 7.6 135 12-157 137-294 (412)
74 1r6b_X CLPA protein; AAA+, N-t 98.5 3E-07 1E-11 79.7 7.6 118 5-138 549-717 (758)
75 1um8_A ATP-dependent CLP prote 98.5 2.8E-07 9.5E-12 73.5 6.8 143 12-156 136-365 (376)
76 3te6_A Regulatory protein SIR3 98.4 7.8E-07 2.7E-11 69.8 7.5 86 2-104 119-211 (318)
77 1iqp_A RFCS; clamp loader, ext 98.3 1E-06 3.5E-11 68.2 6.7 117 12-153 109-231 (327)
78 2p65_A Hypothetical protein PF 98.3 4E-07 1.4E-11 64.6 3.3 79 2-92 103-187 (187)
79 1a5t_A Delta prime, HOLB; zinc 98.2 5.2E-06 1.8E-10 65.3 8.6 109 2-130 93-206 (334)
80 1sxj_A Activator 1 95 kDa subu 98.2 9.6E-06 3.3E-10 67.5 10.6 121 12-155 147-273 (516)
81 1sxj_E Activator 1 40 kDa subu 98.2 4.7E-06 1.6E-10 65.5 8.1 103 13-135 134-243 (354)
82 1qvr_A CLPB protein; coiled co 98.1 5.1E-06 1.7E-10 73.0 6.1 118 6-139 653-822 (854)
83 1g41_A Heat shock protein HSLU 98.1 5.1E-05 1.8E-09 62.0 11.6 139 14-156 251-433 (444)
84 3k1j_A LON protease, ATP-depen 97.9 1.5E-05 5.1E-10 67.6 6.5 95 59-155 252-374 (604)
85 4akg_A Glutathione S-transfera 97.8 8.6E-05 2.9E-09 71.9 10.8 82 14-104 1337-1431(2695)
86 1sxj_C Activator 1 40 kDa subu 97.7 1.7E-05 5.8E-10 62.3 3.5 122 13-154 110-237 (340)
87 2gno_A DNA polymerase III, gam 97.7 8.1E-05 2.8E-09 58.0 6.3 82 2-104 67-152 (305)
88 1ojl_A Transcriptional regulat 97.4 0.00025 8.5E-09 55.0 6.1 119 14-151 97-247 (304)
89 3cmw_A Protein RECA, recombina 97.4 0.0001 3.5E-09 68.8 3.6 71 2-73 1149-1223(1706)
90 2bjv_A PSP operon transcriptio 97.2 0.00046 1.6E-08 52.0 5.3 118 13-149 100-250 (265)
91 3f8t_A Predicted ATPase involv 97.2 0.0041 1.4E-07 51.3 11.0 128 14-157 301-484 (506)
92 2r2a_A Uncharacterized protein 97.1 0.00048 1.6E-08 50.3 4.6 74 12-97 86-159 (199)
93 1jr3_D DNA polymerase III, del 96.7 0.013 4.6E-07 45.6 9.8 133 2-157 61-210 (343)
94 2qen_A Walker-type ATPase; unk 96.2 0.019 6.5E-07 44.2 7.9 105 12-129 127-246 (350)
95 2fna_A Conserved hypothetical 96.2 0.032 1.1E-06 42.9 9.1 112 3-130 125-251 (357)
96 2vhj_A Ntpase P4, P4; non- hyd 94.9 0.017 5.7E-07 45.4 3.2 69 3-76 174-242 (331)
97 1ny5_A Transcriptional regulat 94.6 0.12 4E-06 41.2 7.6 124 14-154 232-385 (387)
98 4ag6_A VIRB4 ATPase, type IV s 93.7 0.35 1.2E-05 38.3 8.7 84 3-100 250-343 (392)
99 1svm_A Large T antigen; AAA+ f 93.7 0.022 7.6E-07 45.5 1.6 71 11-91 214-285 (377)
100 3n70_A Transport activator; si 93.4 0.11 3.9E-06 35.1 4.7 47 4-69 70-116 (145)
101 3cmu_A Protein RECA, recombina 93.3 0.079 2.7E-06 50.6 4.7 71 2-72 1494-1567(2050)
102 3co5_A Putative two-component 93.1 0.058 2E-06 36.6 2.7 49 3-69 68-116 (143)
103 4akg_A Glutathione S-transfera 92.4 2.2 7.4E-05 42.2 13.2 118 3-135 688-839 (2695)
104 3vkg_A Dynein heavy chain, cyt 90.8 0.64 2.2E-05 46.5 7.8 81 14-102 1375-1467(3245)
105 2iut_A DNA translocase FTSK; n 88.8 0.53 1.8E-05 39.6 5.0 75 14-101 344-420 (574)
106 2kjq_A DNAA-related protein; s 88.8 0.14 4.9E-06 35.1 1.3 61 13-89 83-146 (149)
107 3dzd_A Transcriptional regulat 88.0 0.51 1.7E-05 37.3 4.2 75 14-105 223-317 (368)
108 3ec2_A DNA replication protein 85.4 1.4 4.8E-05 30.5 5.0 45 13-70 100-144 (180)
109 1taf_B TFIID TBP associated fa 81.8 2.5 8.5E-05 25.2 4.2 31 124-154 39-69 (70)
110 1b67_A Protein (histone HMFA); 81.0 2.5 8.6E-05 24.7 4.1 34 123-156 34-67 (68)
111 2ius_A DNA translocase FTSK; n 80.2 1.4 4.8E-05 36.5 3.7 75 14-101 297-374 (512)
112 1id3_B Histone H4; nucleosome 79.3 3.2 0.00011 26.6 4.4 35 122-156 59-93 (102)
113 3b0c_W CENP-W, centromere prot 79.1 4.4 0.00015 24.3 4.8 33 125-157 39-71 (76)
114 3cmu_A Protein RECA, recombina 78.3 2.6 8.9E-05 40.6 5.2 72 2-73 795-873 (2050)
115 2hue_C Histone H4; mini beta s 77.2 2.8 9.4E-05 25.8 3.5 36 121-156 40-75 (84)
116 1tzy_D Histone H4-VI; histone- 76.0 4.5 0.00015 25.9 4.4 34 123-156 61-94 (103)
117 2yfw_B Histone H4, H4; cell cy 75.9 4.5 0.00015 25.9 4.4 35 123-157 61-95 (103)
118 1n0w_A DNA repair protein RAD5 75.5 3.8 0.00013 29.4 4.5 69 4-73 110-178 (243)
119 2ehv_A Hypothetical protein PH 75.1 5.1 0.00017 28.7 5.2 74 5-89 127-206 (251)
120 1f1e_A Histone fold protein; a 74.9 4.1 0.00014 28.2 4.3 38 123-160 114-151 (154)
121 1ku5_A HPHA, archaeal histon; 72.5 4.9 0.00017 23.6 3.7 36 119-154 34-69 (70)
122 1z6t_A APAF-1, apoptotic prote 72.5 14 0.00049 30.3 7.8 78 13-121 236-321 (591)
123 2ixe_A Antigen peptide transpo 70.7 12 0.00041 27.9 6.4 54 5-71 166-219 (271)
124 2ghi_A Transport protein; mult 70.5 18 0.00062 26.7 7.3 53 5-72 165-217 (260)
125 1g6h_A High-affinity branched- 70.5 13 0.00045 27.4 6.5 55 5-73 163-217 (257)
126 1n1j_A NF-YB; histone-like PAI 69.9 9.3 0.00032 23.8 4.8 32 124-155 43-74 (93)
127 2yz2_A Putative ABC transporte 68.9 14 0.00046 27.5 6.3 55 5-73 148-202 (266)
128 1ye8_A Protein THEP1, hypothet 68.4 17 0.00057 25.2 6.4 15 10-24 96-110 (178)
129 2ly8_A Budding yeast chaperone 68.4 9.8 0.00033 25.2 4.7 36 123-158 79-114 (121)
130 2cvh_A DNA repair and recombin 68.3 2.7 9.2E-05 29.7 2.2 16 13-28 105-120 (220)
131 2cbz_A Multidrug resistance-as 67.6 22 0.00075 25.8 7.2 56 5-72 137-192 (237)
132 2zu0_C Probable ATP-dependent 67.5 13 0.00046 27.6 6.1 54 5-72 174-227 (267)
133 2z43_A DNA repair and recombin 66.6 2.2 7.6E-05 32.7 1.6 64 3-67 192-256 (324)
134 1xp8_A RECA protein, recombina 66.6 5.9 0.0002 31.2 4.0 59 10-68 149-210 (366)
135 2zr9_A Protein RECA, recombina 66.3 2.7 9.2E-05 32.9 2.0 20 8-27 134-153 (349)
136 2pjz_A Hypothetical protein ST 65.0 21 0.00073 26.5 6.7 51 5-72 138-188 (263)
137 2w0m_A SSO2452; RECA, SSPF, un 64.9 3 0.0001 29.6 1.9 54 5-69 113-168 (235)
138 2ff7_A Alpha-hemolysin translo 64.7 25 0.00087 25.7 7.0 53 5-72 155-207 (247)
139 4a74_A DNA repair and recombin 63.5 2.9 0.0001 29.6 1.6 77 11-90 123-199 (231)
140 3b0c_T CENP-T, centromere prot 63.4 12 0.00041 24.2 4.4 60 98-158 15-74 (111)
141 1e9r_A Conjugal transfer prote 62.7 5 0.00017 31.9 3.0 70 12-100 278-357 (437)
142 2a5y_B CED-4; apoptosis; HET: 62.2 55 0.0019 26.8 9.3 65 13-105 243-307 (549)
143 2d2e_A SUFC protein; ABC-ATPas 62.0 20 0.00068 26.3 6.0 54 5-72 153-206 (250)
144 3gfo_A Cobalt import ATP-bindi 61.9 14 0.00048 27.7 5.2 56 5-73 153-208 (275)
145 3lda_A DNA repair protein RAD5 60.9 6.6 0.00023 31.3 3.4 63 5-68 265-327 (400)
146 3sfz_A APAF-1, apoptotic pepti 59.6 58 0.002 29.0 9.6 86 12-127 235-326 (1249)
147 1n1j_B NF-YC; histone-like PAI 58.1 14 0.00049 23.1 4.0 32 125-156 54-85 (97)
148 1taf_A TFIID TBP associated fa 58.0 19 0.00064 21.2 4.2 37 120-156 30-66 (68)
149 1v5w_A DMC1, meiotic recombina 58.0 4.8 0.00016 31.2 2.0 67 4-71 208-276 (343)
150 4g92_C HAPE; transcription fac 56.7 15 0.00051 24.1 4.0 31 125-155 76-106 (119)
151 2olj_A Amino acid ABC transpor 56.3 12 0.00042 27.8 4.0 54 5-72 169-222 (263)
152 4g1u_C Hemin import ATP-bindin 55.4 29 0.00099 25.7 6.0 47 13-72 165-211 (266)
153 2i1q_A DNA repair and recombin 55.0 4.2 0.00014 31.0 1.2 63 4-67 194-257 (322)
154 3tif_A Uncharacterized ABC tra 54.6 20 0.0007 26.0 4.9 53 5-70 155-207 (235)
155 2pcj_A ABC transporter, lipopr 54.2 27 0.00093 25.0 5.5 52 5-70 150-201 (224)
156 2nq2_C Hypothetical ABC transp 54.1 35 0.0012 25.1 6.2 55 5-72 138-192 (253)
157 1cr0_A DNA primase/helicase; R 53.0 4.9 0.00017 30.1 1.3 21 7-27 141-161 (296)
158 1vpl_A ABC transporter, ATP-bi 52.5 18 0.00061 26.8 4.4 54 5-72 156-209 (256)
159 2byk_B Chrac-14; nucleosome sl 52.4 27 0.00091 23.2 4.8 32 125-156 45-76 (128)
160 1b0u_A Histidine permease; ABC 50.8 31 0.0011 25.4 5.5 54 5-72 163-216 (262)
161 3hr8_A Protein RECA; alpha and 50.5 15 0.00051 28.8 3.8 57 10-66 136-195 (356)
162 1sgw_A Putative ABC transporte 49.8 20 0.00067 25.8 4.1 54 6-73 144-197 (214)
163 1pzn_A RAD51, DNA repair and r 47.7 10 0.00036 29.4 2.5 60 12-72 230-289 (349)
164 2w58_A DNAI, primosome compone 47.6 10 0.00036 26.3 2.3 13 14-26 116-128 (202)
165 3auy_A DNA double-strand break 47.3 53 0.0018 25.4 6.6 18 9-26 300-318 (371)
166 3vkg_A Dynein heavy chain, cyt 44.1 53 0.0018 33.5 7.0 116 3-134 647-798 (3245)
167 3tui_C Methionine import ATP-b 43.5 36 0.0012 26.7 5.0 54 6-72 174-227 (366)
168 1t6n_A Probable ATP-dependent 43.4 17 0.0006 25.4 3.0 13 14-26 159-171 (220)
169 1ji0_A ABC transporter; ATP bi 43.3 60 0.0021 23.4 6.0 53 5-71 149-201 (240)
170 2nqb_D Histone H2B; nucleosome 42.6 46 0.0016 21.9 4.6 40 119-158 62-101 (123)
171 3b60_A Lipid A export ATP-bind 42.1 77 0.0026 26.2 7.1 61 6-88 491-551 (582)
172 1u94_A RECA protein, recombina 41.7 13 0.00044 29.1 2.2 60 10-69 138-200 (356)
173 1tzy_B Histone H2B; histone-fo 41.6 49 0.0017 21.9 4.6 40 119-158 65-104 (126)
174 2r6a_A DNAB helicase, replicat 40.4 10 0.00035 30.5 1.4 18 11-28 311-328 (454)
175 1g5t_A COB(I)alamin adenosyltr 39.9 27 0.00093 24.9 3.5 67 5-89 108-178 (196)
176 2ihy_A ABC transporter, ATP-bi 39.9 44 0.0015 24.9 4.8 54 5-72 171-226 (279)
177 3qkt_A DNA double-strand break 39.9 59 0.002 24.7 5.7 17 8-24 267-283 (339)
178 4aby_A DNA repair protein RECN 39.0 59 0.002 25.3 5.7 46 10-70 310-357 (415)
179 2zts_A Putative uncharacterize 38.5 49 0.0017 23.3 4.8 25 3-27 125-149 (251)
180 1f1e_A Histone fold protein; a 38.5 41 0.0014 23.1 4.1 32 124-155 38-69 (154)
181 2l5a_A Histone H3-like centrom 38.2 52 0.0018 24.3 4.7 36 122-157 192-227 (235)
182 3nh6_A ATP-binding cassette SU 38.1 52 0.0018 25.0 5.1 53 5-72 200-252 (306)
183 2dr3_A UPF0273 protein PH0284; 37.7 62 0.0021 22.7 5.3 23 4-26 119-141 (247)
184 1uhe_A Aspartate 1-decarboxyla 37.3 24 0.00081 22.3 2.4 20 7-26 70-89 (97)
185 1tue_A Replication protein E1; 36.9 20 0.00067 26.1 2.3 10 14-23 104-113 (212)
186 2jss_A Chimera of histone H2B. 36.6 54 0.0018 23.2 4.6 39 121-159 34-72 (192)
187 4a82_A Cystic fibrosis transme 36.1 1.2E+02 0.0043 24.9 7.4 52 6-72 488-539 (578)
188 1jfi_B DR1 protein, transcript 36.1 63 0.0022 22.8 4.8 32 125-156 50-81 (179)
189 2onk_A Molybdate/tungstate ABC 36.0 27 0.00091 25.5 3.0 54 5-71 136-189 (240)
190 1z47_A CYSA, putative ABC-tran 35.7 55 0.0019 25.5 4.9 55 5-72 155-209 (355)
191 1g29_1 MALK, maltose transport 35.6 57 0.002 25.5 5.1 54 5-71 149-202 (372)
192 3d31_A Sulfate/molybdate ABC t 35.3 59 0.002 25.2 5.0 53 6-71 138-190 (348)
193 3plx_B Aspartate 1-decarboxyla 34.8 27 0.00093 22.2 2.4 20 7-26 71-90 (102)
194 3fmo_B ATP-dependent RNA helic 34.2 25 0.00087 26.4 2.7 13 14-26 236-248 (300)
195 2byk_A Chrac-16; nucleosome sl 34.2 36 0.0012 22.9 3.2 31 125-155 54-85 (140)
196 3b5x_A Lipid A export ATP-bind 34.1 77 0.0026 26.2 5.8 52 6-72 491-542 (582)
197 3io5_A Recombination and repai 33.8 35 0.0012 26.5 3.4 56 10-65 108-168 (333)
198 2yyz_A Sugar ABC transporter, 33.2 62 0.0021 25.2 4.8 54 5-71 143-196 (359)
199 3fvq_A Fe(3+) IONS import ATP- 33.0 37 0.0013 26.6 3.5 53 5-71 148-201 (359)
200 1v43_A Sugar-binding transport 32.9 62 0.0021 25.4 4.8 54 5-71 151-204 (372)
201 2oxc_A Probable ATP-dependent 32.3 9.8 0.00033 27.2 0.1 14 14-27 167-180 (230)
202 2qgz_A Helicase loader, putati 32.1 23 0.00079 26.8 2.2 13 13-25 214-226 (308)
203 1jfi_A Transcription regulator 31.9 20 0.0007 22.5 1.5 29 127-155 48-76 (98)
204 3eod_A Protein HNR; response r 31.8 29 0.00099 21.5 2.4 18 4-21 42-59 (130)
205 1tf7_A KAIC; homohexamer, hexa 31.8 1.1E+02 0.0037 24.9 6.3 60 4-72 129-188 (525)
206 1oxx_K GLCV, glucose, ABC tran 31.6 54 0.0019 25.5 4.3 54 5-71 150-203 (353)
207 1e69_A Chromosome segregation 31.0 1.6E+02 0.0055 22.0 6.8 44 12-70 240-283 (322)
208 3szy_A Phosphonoacetate hydrol 30.9 74 0.0025 25.4 5.0 22 9-30 200-221 (427)
209 3rlf_A Maltose/maltodextrin im 30.6 72 0.0025 25.2 4.8 54 5-71 143-196 (381)
210 2it1_A 362AA long hypothetical 30.6 57 0.002 25.5 4.3 54 5-71 143-196 (362)
211 3qf4_B Uncharacterized ABC tra 30.6 1.2E+02 0.0041 25.2 6.5 52 6-72 502-553 (598)
212 3cmw_A Protein RECA, recombina 29.9 40 0.0014 32.2 3.7 69 2-70 1498-1569(1706)
213 4a8j_B Elongator complex prote 28.8 68 0.0023 24.1 4.1 62 2-78 12-75 (270)
214 1nlf_A Regulatory protein REPA 28.8 23 0.00077 26.1 1.6 15 13-27 133-147 (279)
215 3qf4_A ABC transporter, ATP-bi 28.8 1.3E+02 0.0043 25.0 6.3 52 6-72 490-541 (587)
216 3dkp_A Probable ATP-dependent 28.7 18 0.00063 25.8 1.0 14 14-27 176-189 (245)
217 3ozx_A RNAse L inhibitor; ATP 28.5 1E+02 0.0035 25.4 5.6 55 4-71 394-448 (538)
218 2qi9_C Vitamin B12 import ATP- 28.4 93 0.0032 22.7 4.9 52 7-72 138-196 (249)
219 2q6t_A DNAB replication FORK h 28.4 24 0.00081 28.2 1.7 18 10-27 307-324 (444)
220 3b0b_B CENP-S, centromere prot 27.8 50 0.0017 21.2 2.8 37 120-156 51-87 (107)
221 1q57_A DNA primase/helicase; d 27.7 24 0.00082 28.6 1.7 19 9-27 350-368 (503)
222 1h3o_B Transcription initiatio 27.7 1E+02 0.0035 18.4 4.4 33 125-157 40-72 (76)
223 1o6d_A Hypothetical UPF0247 pr 27.5 74 0.0025 22.0 3.9 38 59-101 97-137 (163)
224 3v9r_A MHF1, uncharacterized p 27.4 53 0.0018 20.3 2.8 36 120-155 44-79 (90)
225 1bh9_B TAFII28; histone fold, 27.3 1.1E+02 0.0038 18.8 4.7 62 97-159 23-85 (89)
226 3bh0_A DNAB-like replicative h 27.3 29 0.00099 26.3 2.0 52 11-68 177-230 (315)
227 3b85_A Phosphate starvation-in 26.9 28 0.00096 24.8 1.7 44 10-73 119-162 (208)
228 3b0b_C CENP-X, centromere prot 26.0 1.1E+02 0.0039 18.4 4.5 61 93-155 11-75 (81)
229 1f2t_B RAD50 ABC-ATPase; DNA d 25.2 1.5E+02 0.0052 19.6 6.6 59 9-88 77-135 (148)
230 3qf7_A RAD50; ABC-ATPase, ATPa 24.9 1.6E+02 0.0056 22.6 6.0 45 12-70 302-346 (365)
231 1w1w_A Structural maintenance 24.3 1.7E+02 0.0057 23.0 6.0 15 12-26 354-368 (430)
232 4gp7_A Metallophosphoesterase; 24.0 13 0.00045 25.3 -0.5 64 9-73 97-163 (171)
233 2yqf_A Ankyrin-1; death domain 23.9 1.4E+02 0.0048 18.7 6.0 54 101-157 25-89 (111)
234 2xau_A PRE-mRNA-splicing facto 23.1 22 0.00075 30.8 0.6 15 10-24 205-219 (773)
235 1q0u_A Bstdead; DEAD protein, 23.0 42 0.0014 23.4 2.1 13 14-26 151-163 (219)
236 1to0_A Hypothetical UPF0247 pr 23.0 60 0.0021 22.5 2.8 38 59-101 103-143 (167)
237 3fes_A ATP-dependent CLP endop 22.8 1.5E+02 0.0052 19.2 4.8 36 120-156 82-117 (145)
238 3nhm_A Response regulator; pro 22.8 1.4E+02 0.0047 18.2 7.2 19 3-21 37-55 (133)
239 3iuy_A Probable ATP-dependent 22.5 33 0.0011 24.1 1.4 14 14-27 168-181 (228)
240 3frw_A Putative Trp repressor 22.2 1.2E+02 0.0043 19.3 3.9 35 94-130 46-80 (107)
241 1vec_A ATP-dependent RNA helic 22.1 44 0.0015 22.9 2.0 15 13-27 146-160 (206)
242 3fh2_A Probable ATP-dependent 22.1 1.6E+02 0.0055 19.1 4.8 34 123-156 84-117 (146)
243 3fe2_A Probable ATP-dependent 22.0 52 0.0018 23.4 2.4 14 14-27 177-190 (242)
244 3llm_A ATP-dependent RNA helic 22.0 46 0.0016 23.7 2.1 14 12-25 175-188 (235)
245 3mkl_A HTH-type transcriptiona 22.0 1.5E+02 0.0052 18.4 4.7 34 94-128 10-43 (120)
246 3pey_A ATP-dependent RNA helic 21.9 51 0.0017 24.9 2.5 15 13-27 145-159 (395)
247 3kor_A Possible Trp repressor; 21.8 88 0.003 20.4 3.2 37 92-130 61-97 (119)
248 1g6u_A Domain swapped dimer; d 21.5 54 0.0019 17.0 1.7 16 116-131 13-28 (48)
249 2gxq_A Heat resistant RNA depe 21.4 38 0.0013 23.2 1.6 13 14-26 145-157 (207)
250 2hzt_A Putative HTH-type trans 21.3 1.5E+02 0.0051 18.1 4.6 37 96-132 16-52 (107)
251 4dra_A Centromere protein S; D 21.1 79 0.0027 20.5 2.8 36 120-155 59-94 (113)
252 3gd7_A Fusion complex of cysti 21.1 1.1E+02 0.0037 24.2 4.2 19 5-23 165-183 (390)
253 2qvg_A Two component response 21.0 1.6E+02 0.0054 18.2 4.9 18 4-21 44-67 (143)
254 3df8_A Possible HXLR family tr 20.8 1.6E+02 0.0055 18.2 5.1 37 96-132 29-67 (111)
255 3oou_A LIN2118 protein; protei 20.7 1.5E+02 0.0052 17.9 4.4 37 95-132 9-45 (108)
256 2f8n_G Core histone macro-H2A. 20.6 1.5E+02 0.0052 19.2 4.2 35 121-155 49-87 (120)
257 1xti_A Probable ATP-dependent 20.5 73 0.0025 24.1 3.1 14 13-26 152-165 (391)
258 3bk7_A ABC transporter ATP-bin 20.5 1.6E+02 0.0055 24.6 5.4 55 5-72 481-535 (607)
259 3mn2_A Probable ARAC family tr 20.4 1.5E+02 0.0053 17.9 4.4 36 96-132 7-42 (108)
260 3vh5_A CENP-S; histone fold, c 20.4 1E+02 0.0035 20.8 3.4 36 120-155 51-86 (140)
261 3i5x_A ATP-dependent RNA helic 20.2 1.3E+02 0.0044 24.3 4.7 14 13-26 226-239 (563)
262 2pze_A Cystic fibrosis transme 20.1 2.4E+02 0.0081 20.0 7.1 19 5-23 140-158 (229)
263 2yl4_A ATP-binding cassette SU 20.0 1.9E+02 0.0065 23.9 5.7 52 6-72 494-545 (595)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-41 Score=272.21 Aligned_cols=158 Identities=45% Similarity=0.797 Sum_probs=148.7
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
|+.+|+.|+.++||||||||+|++++.|....++.+....+++++||++||++....+|+||||||+|+.||||++||||
T Consensus 230 vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGR 309 (405)
T 4b4t_J 230 VRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGR 309 (405)
T ss_dssp HHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTS
T ss_pred HHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCc
Confidence 78999999999999999999999999987777666777889999999999999999999999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
||+.|+|++|+.++|.+||+.++. .+++++.+|+.|+||||+||+++|++|++.|++++...|+.+||+.|++++
T Consensus 310 fD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 310 IDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKV 389 (405)
T ss_dssp SCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 999999999999999999997665 578999999999999999999999999999999999999999999999988
Q ss_pred cCC
Q 030960 157 VKK 159 (168)
Q Consensus 157 ~p~ 159 (168)
.++
T Consensus 390 ~~~ 392 (405)
T 4b4t_J 390 MNK 392 (405)
T ss_dssp HHH
T ss_pred hCc
Confidence 764
No 2
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-41 Score=272.38 Aligned_cols=166 Identities=48% Similarity=0.797 Sum_probs=156.5
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|..|+.++||||||||+|++++.|.....+.+....++++.||++|+++....+|+||||||+|+.||||++||||
T Consensus 263 ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGR 342 (434)
T 4b4t_M 263 VRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGR 342 (434)
T ss_dssp HHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTS
T ss_pred HHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCc
Confidence 78999999999999999999999999997766666667788999999999999988899999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
||+.|+|++|+.++|.+||+.++. ++++++.+|+.|+||||+||.++|++|++.|++++...|+.+||.+|++++
T Consensus 343 fD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 343 LDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp EEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred eeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 999999999999999999986554 678999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccc
Q 030960 157 VKKPDTDFEFY 167 (168)
Q Consensus 157 ~p~~~~~~~~~ 167 (168)
+|+..+.+.+|
T Consensus 423 ~~~~~~~i~~Y 433 (434)
T 4b4t_M 423 QARKSKSVSFY 433 (434)
T ss_dssp SSSCCCCCCCC
T ss_pred hCCCCcCcccc
Confidence 99998999988
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-40 Score=266.00 Aligned_cols=164 Identities=48% Similarity=0.851 Sum_probs=151.3
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|..|+..+||||||||+|+++..|.......+....++++++|+++|++....+|+||||||+|+.||+|++||||
T Consensus 264 ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGR 343 (437)
T 4b4t_I 264 CRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGR 343 (437)
T ss_dssp HHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTT
T ss_pred HHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCc
Confidence 78999999999999999999999999997777666777789999999999999888899999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
||+.|+|++|+.++|.+||+.++. .+++++.+|+.|+||||+||+++|++|++.|++++...|+.+||..|++++
T Consensus 344 fD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv 423 (437)
T 4b4t_I 344 IDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERV 423 (437)
T ss_dssp EEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred eeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 999999999999999999997765 578999999999999999999999999999999999999999999999988
Q ss_pred cCCC-CCccc
Q 030960 157 VKKP-DTDFE 165 (168)
Q Consensus 157 ~p~~-~~~~~ 165 (168)
.|+. .+.++
T Consensus 424 ~~~~~~e~le 433 (437)
T 4b4t_I 424 MKNKVEENLE 433 (437)
T ss_dssp HHHHCCCSSS
T ss_pred hCCCChhhHH
Confidence 7643 34444
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-39 Score=265.07 Aligned_cols=167 Identities=50% Similarity=0.780 Sum_probs=149.1
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|..|+.++||||||||+|++++.|.......+....+++++||++||++....+|+||+|||+|+.||||++||||
T Consensus 263 ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGR 342 (437)
T 4b4t_L 263 IREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGR 342 (437)
T ss_dssp HHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTS
T ss_pred HHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCc
Confidence 78999999999999999999999999997776667777789999999999999988899999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
||+.|+|++|+.++|.+||+.++. .+++++.+|+.|+||||+||.++|++|++.|++++...|+.+||..|++++
T Consensus 343 fD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v 422 (437)
T 4b4t_L 343 LDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKV 422 (437)
T ss_dssp EEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred cceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 999999999999999999997664 578999999999999999999999999999999999999999999999998
Q ss_pred cCCC--CCcccccC
Q 030960 157 VKKP--DTDFEFYK 168 (168)
Q Consensus 157 ~p~~--~~~~~~~k 168 (168)
.|.. ....+|.|
T Consensus 423 ~~~~k~e~~~e~~K 436 (437)
T 4b4t_L 423 AEVKKLEGTIEYQK 436 (437)
T ss_dssp HHTCC---------
T ss_pred HhccCcccchhhhc
Confidence 8754 23445544
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-39 Score=264.68 Aligned_cols=167 Identities=73% Similarity=1.078 Sum_probs=153.5
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
|+.+|..|+.++||||||||+|++++.|.......+....+++++||++||++....+|+||||||+|+.||||++||||
T Consensus 254 ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGR 333 (428)
T 4b4t_K 254 VRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGR 333 (428)
T ss_dssp HHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSS
T ss_pred HHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCc
Confidence 78999999999999999999999999997777666777789999999999999988899999999999999999999999
Q ss_pred cceEEecC-CCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 82 LDRKIEFP-LPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 82 f~~~i~~~-~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
||+.|+|| +|+.++|..||+.++. .+++++.+|..|+||||+||.++|++|++.|+++++..|+.+||++|+.+
T Consensus 334 fd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 334 LDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp EEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 99999996 8999999999986654 57899999999999999999999999999999999999999999999988
Q ss_pred hcCCC--CCcccccC
Q 030960 156 NVKKP--DTDFEFYK 168 (168)
Q Consensus 156 ~~p~~--~~~~~~~k 168 (168)
..+.+ ...+++||
T Consensus 414 ~~~~~~~~~~~d~yk 428 (428)
T 4b4t_K 414 QVKTDNTVDKFDFYK 428 (428)
T ss_dssp HSCSCCCSSCCCSCC
T ss_pred hhCccCCccHhhhhC
Confidence 65543 56788887
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-38 Score=259.72 Aligned_cols=157 Identities=45% Similarity=0.757 Sum_probs=147.9
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|..|+..+||||||||+|+++..|.....+......++++++|++|+++....+|+||||||+|+.||+|++||||
T Consensus 291 ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGR 370 (467)
T 4b4t_H 291 VRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGR 370 (467)
T ss_dssp HHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTT
T ss_pred HHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhcccc
Confidence 78999999999999999999999999997777677777789999999999999888999999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
||+.|+|++|+.++|.+||+.++. .+++++.+|+.|+||||+||+++|++|++.|++++...++.+||..|++++
T Consensus 371 FD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 371 IDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp CCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred ccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 999999999999999999997765 578999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 030960 157 VK 158 (168)
Q Consensus 157 ~p 158 (168)
.+
T Consensus 451 ~~ 452 (467)
T 4b4t_H 451 IS 452 (467)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1e-37 Score=270.03 Aligned_cols=166 Identities=38% Similarity=0.620 Sum_probs=104.9
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
|+.+|+.|++.+||||||||+|++++.|+......+....+++++||++||++....+|+||||||+|+.||+|++||||
T Consensus 559 vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgR 638 (806)
T 3cf2_A 559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGR 638 (806)
T ss_dssp HHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTT
T ss_pred HHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCc
Confidence 78999999999999999999999999986554444555669999999999999988899999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC----------------
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN---------------- 140 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~---------------- 140 (168)
||+.|+|++|+.++|.+||+.++. .+++++.||+.|+||||+||+++|++|++.|+++.
T Consensus 639 fd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~ 718 (806)
T 3cf2_A 639 LDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPS 718 (806)
T ss_dssp SCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC--------------
T ss_pred ceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcc
Confidence 999999999999999999997776 47899999999999999999999999999999873
Q ss_pred ---------CCccCHHHHHHHHHhhcCCC-CCccccc
Q 030960 141 ---------RYVILPKDFEKGYRTNVKKP-DTDFEFY 167 (168)
Q Consensus 141 ---------~~~i~~~d~~~al~~~~p~~-~~~~~~~ 167 (168)
...|+.+||++|+++++|+- .++++.|
T Consensus 719 ~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y 755 (806)
T 3cf2_A 719 AMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKY 755 (806)
T ss_dssp ---------CCC----CCTTTC---------------
T ss_pred ccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHH
Confidence 13699999999999999963 5566655
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.1e-32 Score=236.87 Aligned_cols=158 Identities=38% Similarity=0.604 Sum_probs=143.0
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|+.|++++||||||||+|++++.|++..+.. ..+++++|+++|+++....+|+|||+||+++.||++++||||
T Consensus 286 lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~---~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GR 362 (806)
T 3cf2_A 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV---ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGR 362 (806)
T ss_dssp HHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTT---HHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTS
T ss_pred HHHHHHHHHHcCCeEEEEehhcccccccCCCCChH---HHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcc
Confidence 68999999999999999999999999886554433 358999999999999888899999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC----------------
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN---------------- 140 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~---------------- 140 (168)
||+.|++++|+.++|.+||+.++. .++++..+|..|+||+|+||.++|++|++.|+++.
T Consensus 363 Fd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~ 442 (806)
T 3cf2_A 363 FDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVM 442 (806)
T ss_dssp SCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHH
T ss_pred cceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhh
Confidence 999999999999999999997775 57899999999999999999999999999998773
Q ss_pred -CCccCHHHHHHHHHhhcCCCCC
Q 030960 141 -RYVILPKDFEKGYRTNVKKPDT 162 (168)
Q Consensus 141 -~~~i~~~d~~~al~~~~p~~~~ 162 (168)
...++.+||..|++..+|+...
T Consensus 443 ~~~~v~~~Df~~Al~~~~ps~~r 465 (806)
T 3cf2_A 443 NSLAVTMDDFRWALSQSNPSALR 465 (806)
T ss_dssp HHCEECTTHHHHHHSSSSCCCCC
T ss_pred ccceeeHHHHHHHHHhCCCcccc
Confidence 1358899999999999997643
No 9
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=196.49 Aligned_cols=157 Identities=36% Similarity=0.603 Sum_probs=132.4
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|+.|+...||++++||+|.++..++..... ...++++.++..|++......++++++||+|+.||++++||||
T Consensus 92 i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~---~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gR 168 (274)
T 2x8a_A 92 VRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETG---ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGR 168 (274)
T ss_dssp HHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTS
T ss_pred HHHHHHHHHhcCCCeEeeehhhhhhcccCCCcch---HHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCccc
Confidence 5789999999999999999999998765432211 1236788999999998888889999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC--------CCCCHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHhC-----------
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS--------DEVDLEDYVSRP--DKISAAEIAAICQEAGMHAVRKN----------- 140 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~--------~~~~~~~la~~t--~g~s~~di~~l~~~a~~~a~~~~----------- 140 (168)
||+.|++++|+.++|.+||+.++. .++++..+|..| +||||+||.++|++|++.|+++.
T Consensus 169 fd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~ 248 (274)
T 2x8a_A 169 LDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKG 248 (274)
T ss_dssp SCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC----------
T ss_pred CCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 999999999999999999997663 478899999985 59999999999999999998762
Q ss_pred CCccCHHHHHHHHHhhcCCCC
Q 030960 141 RYVILPKDFEKGYRTNVKKPD 161 (168)
Q Consensus 141 ~~~i~~~d~~~al~~~~p~~~ 161 (168)
...|+.+||++|+++++|+..
T Consensus 249 ~~~i~~~df~~al~~~~ps~~ 269 (274)
T 2x8a_A 249 ELKVSHKHFEEAFKKVRSSIS 269 (274)
T ss_dssp -CCBCHHHHHHHHTTCCCCC-
T ss_pred CCeecHHHHHHHHHHhcCCCC
Confidence 346999999999999999653
No 10
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=2.5e-28 Score=201.65 Aligned_cols=158 Identities=39% Similarity=0.615 Sum_probs=136.4
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|+.|+..+||||||||+|.+...++....+.+....++++.++..++++....+++||++||+++.+|++++||||
T Consensus 97 ~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gR 176 (476)
T 2ce7_A 97 VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGR 176 (476)
T ss_dssp HHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTS
T ss_pred HHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCc
Confidence 57899999999999999999999998875443344445568899999999988777799999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
|+..+.+++|+.++|.+|++.++. +++++..++..|+||+|+||.++|++|+..|.+++...|+.+||..|+.++
T Consensus 177 Fd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v 256 (476)
T 2ce7_A 177 FDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRV 256 (476)
T ss_dssp SCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred ceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHH
Confidence 999999999999999999986655 467899999999999999999999999999999888899999999999998
Q ss_pred cCC
Q 030960 157 VKK 159 (168)
Q Consensus 157 ~p~ 159 (168)
.+.
T Consensus 257 ~~~ 259 (476)
T 2ce7_A 257 IAG 259 (476)
T ss_dssp C--
T ss_pred hcC
Confidence 764
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=3e-28 Score=190.84 Aligned_cols=159 Identities=38% Similarity=0.614 Sum_probs=137.1
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|+.|+..+|+||||||+|.+...++...........++++.++..++++....+++||+|||+++.+|++++||||
T Consensus 97 ~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gR 176 (301)
T 3cf0_A 97 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGR 176 (301)
T ss_dssp HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTS
T ss_pred HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCc
Confidence 57899999999999999999999998764432222222237788899999988777789999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC----------------
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN---------------- 140 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~---------------- 140 (168)
|+..+++++|+.++|.+|++.++. .++++..++..|.||+|+||.++|++|+..|.++.
T Consensus 177 f~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 256 (301)
T 3cf0_A 177 LDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPS 256 (301)
T ss_dssp SCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 999999999999999999997775 46889999999999999999999999998887652
Q ss_pred ---------CCccCHHHHHHHHHhhcCCC
Q 030960 141 ---------RYVILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 141 ---------~~~i~~~d~~~al~~~~p~~ 160 (168)
...|+.+||.+|+++.+|+.
T Consensus 257 ~~~~~~~~~~~~v~~~~~~~al~~~~~s~ 285 (301)
T 3cf0_A 257 AMEVEEDDPVPEIRRDHFEEAMRFARRSV 285 (301)
T ss_dssp ---------CCCBCHHHHHHHHTTCCCSS
T ss_pred cccccccccCCccCHHHHHHHHHHcCCCC
Confidence 13689999999999999865
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=1.2e-26 Score=177.52 Aligned_cols=158 Identities=39% Similarity=0.612 Sum_probs=139.7
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|+.|+...|++++|||+|.+...+............+.++.++..++++....+++||++||.++.+|++++||||
T Consensus 93 ~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~r 172 (257)
T 1lv7_A 93 VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGR 172 (257)
T ss_dssp HHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTS
T ss_pred HHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCc
Confidence 56889999998999999999999998765433333334457888999999988777889999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
|+..+++++|+.++|.+|++.++. ++.++..++..++||+++||.++|++|+..|.+++...|+.+||.+|++.+
T Consensus 173 f~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 173 FDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp SCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 999999999999999999987654 467889999999999999999999999999999988999999999999987
Q ss_pred cCC
Q 030960 157 VKK 159 (168)
Q Consensus 157 ~p~ 159 (168)
...
T Consensus 253 ~~~ 255 (257)
T 1lv7_A 253 MMG 255 (257)
T ss_dssp TTC
T ss_pred hcC
Confidence 654
No 13
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.95 E-value=5.3e-27 Score=185.51 Aligned_cols=154 Identities=33% Similarity=0.542 Sum_probs=135.2
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC-CCCCeEEEEecCCCCCCCccccCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-QTVNVKVIMATNRADTLDPALLRPG 80 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~v~vi~ttn~~~~ld~al~r~g 80 (168)
++.+|..|+..+|+||||||+|.+++.+.... .....+++++++..++++. ...+++||++||.|+.+|++++|
T Consensus 94 ~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r-- 168 (322)
T 1xwi_A 94 VKNLFQLARENKPSIIFIDEIDSLCGSRSENE---SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR-- 168 (322)
T ss_dssp HHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC---TTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--
T ss_pred HHHHHHHHHhcCCcEEEeecHHHhcccccccc---chHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--
Confidence 67899999999999999999999998775433 2345688999999999885 45789999999999999999999
Q ss_pred CcceEEecCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC--------------
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN-------------- 140 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~-------------- 140 (168)
||+..+++++|+.++|.+||+.++. .+.++..++..|+||||+||..+|++|++.++++.
T Consensus 169 Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~~~~~~~ 248 (322)
T 1xwi_A 169 RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSR 248 (322)
T ss_dssp TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEEEEECS
T ss_pred hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 9999999999999999999998765 34568899999999999999999999999988762
Q ss_pred -----------------------------------CCccCHHHHHHHHHhhcCCC
Q 030960 141 -----------------------------------RYVILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 141 -----------------------------------~~~i~~~d~~~al~~~~p~~ 160 (168)
..+|+.+||..|++.++|+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~ 303 (322)
T 1xwi_A 249 ADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTV 303 (322)
T ss_dssp SCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSC
T ss_pred cccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCC
Confidence 13699999999999999975
No 14
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=3.6e-26 Score=176.88 Aligned_cols=166 Identities=50% Similarity=0.794 Sum_probs=142.2
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|..++...|+||+|||+|.+++++.+...+........+..++..++++....++++|+|||.++.+|++++|+||
T Consensus 99 ~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~R 178 (285)
T 3h4m_A 99 VKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGR 178 (285)
T ss_dssp HHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTS
T ss_pred HHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCc
Confidence 56889999999999999999999998876665555666778888999999888777899999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
|+..+++++|+.++|.+|++.++. .+.++..++..+.||+++||..+|+.|...|+.++...|+.+||.+|++++
T Consensus 179 f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 179 FDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp EEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 999999999999999999997665 467899999999999999999999999999999999999999999999876
Q ss_pred cC-------CCCCccccc
Q 030960 157 VK-------KPDTDFEFY 167 (168)
Q Consensus 157 ~p-------~~~~~~~~~ 167 (168)
.+ .+.....||
T Consensus 259 ~~~~~~~~~~~~~~~~~~ 276 (285)
T 3h4m_A 259 MEKKKVKVKEPAHLDVLY 276 (285)
T ss_dssp HHHHCCC-----------
T ss_pred HhccccccCCchHHHHHH
Confidence 53 234555555
No 15
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.94 E-value=2.3e-26 Score=190.91 Aligned_cols=159 Identities=38% Similarity=0.630 Sum_probs=140.3
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|+.|+...|||+||||+|.+...+............+.+++++..|++......++++++||+|+.+|++++||||
T Consensus 112 v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gR 191 (499)
T 2dhr_A 112 VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGR 191 (499)
T ss_dssp HHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTS
T ss_pred HHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccc
Confidence 46788888888899999999999987764322233445568889999999998887889999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
||+.+++++|+..+|.+||+.++. +++++..+|..|+||+|+||+++|++|+..|.+++...|+.+||.+++.++
T Consensus 192 fdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v 271 (499)
T 2dhr_A 192 FDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRV 271 (499)
T ss_dssp SCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHH
T ss_pred cceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Confidence 999999999999999999997654 577899999999999999999999999999998888899999999999998
Q ss_pred cCCC
Q 030960 157 VKKP 160 (168)
Q Consensus 157 ~p~~ 160 (168)
.+..
T Consensus 272 ~~~~ 275 (499)
T 2dhr_A 272 MMLP 275 (499)
T ss_dssp TTCS
T ss_pred hccc
Confidence 7653
No 16
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.94 E-value=5.9e-27 Score=185.02 Aligned_cols=159 Identities=35% Similarity=0.527 Sum_probs=133.3
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC-CCCCeEEEEecCCCCCCCccccCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-QTVNVKVIMATNRADTLDPALLRPG 80 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~v~vi~ttn~~~~ld~al~r~g 80 (168)
++.+|..|+..+|+||||||+|.+.+.++...... ..++.+.++..++++. ...+++||+|||.++.+|++++|
T Consensus 99 ~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~---~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~-- 173 (322)
T 3eie_A 99 VKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA---SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR-- 173 (322)
T ss_dssp HHHHHHHHHHTSSEEEEEECGGGGSCC------CC---THHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHH--
T ss_pred HHHHHHHHHhcCCeEEEechhhhhhccCCCCcchH---HHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHc--
Confidence 67899999999999999999999998775443332 3478889999998874 55689999999999999999999
Q ss_pred CcceEEecCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCC-------------
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNR------------- 141 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~------------- 141 (168)
||+..+++++|+.++|.+||+.++. .+.++..++..|+|||++||.++|++|+..++++..
T Consensus 174 Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~ 253 (322)
T 3eie_A 174 RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDD 253 (322)
T ss_dssp HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----
T ss_pred ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccc
Confidence 9999999999999999999998765 344688999999999999999999999999888631
Q ss_pred ------------------------------CccCHHHHHHHHHhhcCCC-CCccc
Q 030960 142 ------------------------------YVILPKDFEKGYRTNVKKP-DTDFE 165 (168)
Q Consensus 142 ------------------------------~~i~~~d~~~al~~~~p~~-~~~~~ 165 (168)
..|+.+||.+|++.++|+. .+.++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~ 308 (322)
T 3eie_A 254 ETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLL 308 (322)
T ss_dssp CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHH
T ss_pred cccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHH
Confidence 3599999999999999975 33443
No 17
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.94 E-value=1.2e-25 Score=171.60 Aligned_cols=152 Identities=39% Similarity=0.652 Sum_probs=129.4
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|+.+....|+++++||+|.++..+............+.++.++..+++......++++++||.|+.+|++++|+||
T Consensus 97 i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~r 176 (254)
T 1ixz_A 97 VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGR 176 (254)
T ss_dssp HHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTS
T ss_pred HHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCc
Confidence 46789998888899999999999987664322223344567888999999988777789999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
|+..+++++|+.++|.+||+.+.. ++.++..++..++||+++||.++|++|+..|.+++...|+.+||.+++
T Consensus 177 f~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 177 FDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp SCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 999999999999999999986543 577899999999999999999999999999999888899999999986
No 18
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.94 E-value=4.6e-26 Score=182.29 Aligned_cols=155 Identities=34% Similarity=0.523 Sum_probs=130.4
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCC-CCCeEEEEecCCCCCCCccccCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQ-TVNVKVIMATNRADTLDPALLRPG 80 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~v~vi~ttn~~~~ld~al~r~g 80 (168)
++.+|..|+..+|+||||||+|.+.+.++... .....++.+.++..++++.. ..+++||++||.++.+|++++|
T Consensus 132 ~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r-- 206 (355)
T 2qp9_X 132 VKQLFAMARENKPSIIFIDQVDALTGTRGEGE---SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR-- 206 (355)
T ss_dssp HHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--
T ss_pred HHHHHHHHHHcCCeEEEEechHhhcccCCCCc---chHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--
Confidence 57899999999999999999999998774432 23445788899999988753 5689999999999999999999
Q ss_pred CcceEEecCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC--------------
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN-------------- 140 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~-------------- 140 (168)
||+..+++++|+.++|.+||+.++. .+.++..|+..|+||+|+||.++|++|++.|+++.
T Consensus 207 Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~ 286 (355)
T 2qp9_X 207 RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDD 286 (355)
T ss_dssp TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC---
T ss_pred ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 9999999999999999999998775 24568899999999999999999999999999862
Q ss_pred -----------------------------CCccCHHHHHHHHHhhcCCCC
Q 030960 141 -----------------------------RYVILPKDFEKGYRTNVKKPD 161 (168)
Q Consensus 141 -----------------------------~~~i~~~d~~~al~~~~p~~~ 161 (168)
...|+.+||..|++.++|+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~ 336 (355)
T 2qp9_X 287 ETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 336 (355)
T ss_dssp --CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSC
T ss_pred cccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCC
Confidence 135999999999999999753
No 19
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.93 E-value=1.8e-25 Score=183.60 Aligned_cols=154 Identities=33% Similarity=0.542 Sum_probs=134.7
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC-CCCCeEEEEecCCCCCCCccccCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-QTVNVKVIMATNRADTLDPALLRPG 80 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~v~vi~ttn~~~~ld~al~r~g 80 (168)
++.+|..|+..+|+||||||+|.+++.+..... ....++++.|+..++++. ...+++||+|||.|+.+|++++|
T Consensus 216 ~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~---~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r-- 290 (444)
T 2zan_A 216 VKNLFQLARENKPSIIFIDEIDSLCGSRSENES---EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR-- 290 (444)
T ss_dssp HHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCC---GGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT--
T ss_pred HHHHHHHHHHcCCeEEEEechHhhccCCCCccc---cHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh--
Confidence 688999999999999999999999987754432 234588999999999875 35689999999999999999999
Q ss_pred CcceEEecCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC--------------
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN-------------- 140 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~-------------- 140 (168)
||+..+++++|+.++|..||+.++. .+.++..++..|+||||+||..+|++|++.++++.
T Consensus 291 Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~ 370 (444)
T 2zan_A 291 RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSR 370 (444)
T ss_dssp TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBCS
T ss_pred hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 9999999999999999999998765 34578899999999999999999999999888752
Q ss_pred -----------------------------------CCccCHHHHHHHHHhhcCCC
Q 030960 141 -----------------------------------RYVILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 141 -----------------------------------~~~i~~~d~~~al~~~~p~~ 160 (168)
..+|+.+||..|++.++|+.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~ 425 (444)
T 2zan_A 371 ADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTV 425 (444)
T ss_dssp SCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSC
T ss_pred cccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCC
Confidence 13689999999999999975
No 20
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.93 E-value=3.2e-25 Score=183.96 Aligned_cols=156 Identities=38% Similarity=0.612 Sum_probs=138.1
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|..|...+|++|||||+|.+.+.+.... .....++++.|+..|+++....+++||+|||+++.||++++++||
T Consensus 286 ~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~---~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gR 362 (489)
T 3hu3_A 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGR 362 (489)
T ss_dssp HHHHHHHHHHTCSEEEEEESHHHHCBCTTSCC---CHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTS
T ss_pred HHHHHHHHHhcCCcEEEecchhhhcccccccc---chHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCc
Confidence 57899999999999999999999998774332 234458888999999988778899999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCC--------------
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRY-------------- 142 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~-------------- 142 (168)
|+..+++++|+.++|.+||+.++. .+.++..++..+.||+++||.++|++|+..++++...
T Consensus 363 f~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~ 442 (489)
T 3hu3_A 363 FDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVM 442 (489)
T ss_dssp SCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHH
T ss_pred CceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhc
Confidence 999999999999999999997665 4678999999999999999999999999999987532
Q ss_pred ---ccCHHHHHHHHHhhcCCC
Q 030960 143 ---VILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 143 ---~i~~~d~~~al~~~~p~~ 160 (168)
.++.+||..|++.+.|+.
T Consensus 443 ~~~~vt~edf~~Al~~~~ps~ 463 (489)
T 3hu3_A 443 NSLAVTMDDFRWALSQSNPSA 463 (489)
T ss_dssp HHCCBCHHHHHHHHTSHHHHH
T ss_pred ccCcCCHHHHHHHHHhCCchh
Confidence 589999999999998865
No 21
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.93 E-value=1.8e-24 Score=167.41 Aligned_cols=152 Identities=39% Similarity=0.652 Sum_probs=129.7
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|+.+....|+++++||+|.+...+..............++.++..+++......++++++||.|+.+|++++|+||
T Consensus 121 i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~r 200 (278)
T 1iy2_A 121 VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGR 200 (278)
T ss_dssp HHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTS
T ss_pred HHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCc
Confidence 46789999888899999999999986653322222334567888999999988777789999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
|+..+++++|+.++|.+||+.+.. ++.++..++..++||+++||.++|++|+..|.+++...|+.+||.+|+
T Consensus 201 f~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 201 FDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp SCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred CCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 999999999999999999986553 567899999999999999999999999999998888889999999986
No 22
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.92 E-value=1.4e-27 Score=208.19 Aligned_cols=159 Identities=38% Similarity=0.613 Sum_probs=132.6
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|+.|+...||||||||+|.++..++......+....+++++|+..|+++....+++||+|||+++.||++++||||
T Consensus 559 i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgR 638 (806)
T 1ypw_A 559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGR 638 (806)
T ss_dssp HHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGG
T ss_pred HHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccc
Confidence 57899999999999999999999998886554444556679999999999999888899999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCC---------------
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNR--------------- 141 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~--------------- 141 (168)
|+..|++++|+.++|.+||+.++. .+.++..+++.|+|||++||.++|++|+..|+++.-
T Consensus 639 f~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 718 (806)
T 1ypw_A 639 LDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPS 718 (806)
T ss_dssp TTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC----------------
T ss_pred cCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 999999999999999999998775 467888999999999999999999999999998741
Q ss_pred ----------CccCHHHHHHHHHhhcCCC
Q 030960 142 ----------YVILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 142 ----------~~i~~~d~~~al~~~~p~~ 160 (168)
..|+.+||.++++..+|+-
T Consensus 719 ~~~~~~~~~~~~i~~~~f~~a~~~~~~sv 747 (806)
T 1ypw_A 719 AMEVEEDDPVPEIRRDHFEEAMRFARRSV 747 (806)
T ss_dssp --------CCTTTTTTSSCCCCCC-----
T ss_pred ccccccccccCccCHHHHHHHHHhCCCCC
Confidence 2588999999988887753
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.92 E-value=2.2e-25 Score=170.15 Aligned_cols=159 Identities=36% Similarity=0.595 Sum_probs=118.9
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCC-cchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTG-ADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (168)
++.+|..|...+|+||+|||+|.++..+...... ........++.++..++++....++++|+|||.++.+|++++|||
T Consensus 87 ~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~ 166 (262)
T 2qz4_A 87 VRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPG 166 (262)
T ss_dssp HHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTT
T ss_pred HHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCC
Confidence 5678999999999999999999998776432211 122334678889999988777778999999999999999999999
Q ss_pred CcceEEecCCCCHHHHHHHHHhhcCC-------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQMNLSD-------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~~~l~~-------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
||+..+++++|+.++|.+|++.++.. +..+..++..+.||+++||.++|+.|+..|.+++...|+.+||..|+
T Consensus 167 R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~ 246 (262)
T 2qz4_A 167 RLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAV 246 (262)
T ss_dssp SCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHH
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 99999999999999999999976652 11347899999999999999999999999999888899999999999
Q ss_pred HhhcCCC
Q 030960 154 RTNVKKP 160 (168)
Q Consensus 154 ~~~~p~~ 160 (168)
++..+..
T Consensus 247 ~~~~~~~ 253 (262)
T 2qz4_A 247 ERVLAGT 253 (262)
T ss_dssp HHHHHHH
T ss_pred HHhccCh
Confidence 9877643
No 24
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.91 E-value=1.2e-25 Score=172.66 Aligned_cols=163 Identities=34% Similarity=0.583 Sum_probs=130.1
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCC-CcchHHHHHHHHHHHhccCCCC-CCCeEEEEecCCCCCCCccccCCC
Q 030960 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQT-GADREVQRILMELLNQMDGFDQ-TVNVKVIMATNRADTLDPALLRPG 80 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~-~~~v~vi~ttn~~~~ld~al~r~g 80 (168)
+.+|+.|...+|+||+|||+|.+...+..... ..+....+.++.++..+++... ..+++||+|||.++.+|++++|+|
T Consensus 93 ~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~ 172 (268)
T 2r62_A 93 RDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPG 172 (268)
T ss_dssp STTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSS
T ss_pred HHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCC
Confidence 46789999999999999999999876522110 0011112455667788877643 345999999999999999999999
Q ss_pred CcceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
||+..+++++|+.++|.++|+.++. .+.++..++..+.||+|+||.++|+.|+..|..++...|+.+|+.++++.
T Consensus 173 Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 252 (268)
T 2r62_A 173 RFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVER 252 (268)
T ss_dssp SSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTT
T ss_pred CCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 9999999999999999999997765 45678899999999999999999999999998887889999999999999
Q ss_pred hcCCCCCccc
Q 030960 156 NVKKPDTDFE 165 (168)
Q Consensus 156 ~~p~~~~~~~ 165 (168)
..|......+
T Consensus 253 ~~~~~~~~~~ 262 (268)
T 2r62_A 253 GIAGLEKKLE 262 (268)
T ss_dssp CCCCCC----
T ss_pred Hhhcchhhhh
Confidence 9988765543
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=162.79 Aligned_cols=154 Identities=33% Similarity=0.532 Sum_probs=128.2
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC--CCCCeEEEEecCCCCCCCccccCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD--QTVNVKVIMATNRADTLDPALLRP 79 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~v~vi~ttn~~~~ld~al~r~ 79 (168)
++.+|..|+..+|+||||||+|.++..+.... .....++++.++..+++.. ...+++||++||.++.+|+++++
T Consensus 165 ~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~- 240 (357)
T 3d8b_A 165 VRALFAVARCQQPAVIFIDEIDSLLSQRGDGE---HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR- 240 (357)
T ss_dssp HHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT-
T ss_pred HHHHHHHHHhcCCeEEEEeCchhhhccCCCCc---chHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh-
Confidence 57889999999999999999999998764322 2234578889999998764 34579999999999999999999
Q ss_pred CCcceEEecCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC------------C
Q 030960 80 GRLDRKIEFPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN------------R 141 (168)
Q Consensus 80 grf~~~i~~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~------------~ 141 (168)
||+..+++++|+.++|.++++.++. .+.++..++..++||+++||..+|+.|...++++. .
T Consensus 241 -Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~ 319 (357)
T 3d8b_A 241 -RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQV 319 (357)
T ss_dssp -TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------C
T ss_pred -hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcccccccc
Confidence 9999999999999999999987653 23457789999999999999999999999998853 2
Q ss_pred CccCHHHHHHHHHhhcCCC
Q 030960 142 YVILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 142 ~~i~~~d~~~al~~~~p~~ 160 (168)
..|+.+||..|+..++|+.
T Consensus 320 ~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 320 RPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp CCBCHHHHHHHHHHHGGGC
T ss_pred CCcCHHHHHHHHHhcCCCC
Confidence 5799999999999999854
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.88 E-value=1.2e-22 Score=157.95 Aligned_cols=154 Identities=29% Similarity=0.502 Sum_probs=126.7
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCC---CCeEEEEecCCCCCCCccccC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQT---VNVKVIMATNRADTLDPALLR 78 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~v~vi~ttn~~~~ld~al~r 78 (168)
++.+|..+...+|+||||||+|.++..+........ .++.+.++..++++... .+++||++||+++.+|+++++
T Consensus 102 ~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~---~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~ 178 (297)
T 3b9p_A 102 VRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEAS---RRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR 178 (297)
T ss_dssp HHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCS---HHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH
T ss_pred HHHHHHHHHHcCCcEEEeccHHHhccccccCcchHH---HHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh
Confidence 567899999999999999999999987644332222 36677788888876433 579999999999999999999
Q ss_pred CCCcceEEecCCCCHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC------------
Q 030960 79 PGRLDRKIEFPLPDRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN------------ 140 (168)
Q Consensus 79 ~grf~~~i~~~~P~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~------------ 140 (168)
||+..+++++|+.++|..|++.++.. +.++..++..+.||+++||..+|+.|+..++++.
T Consensus 179 --R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~ 256 (297)
T 3b9p_A 179 --RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISA 256 (297)
T ss_dssp --HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCC
T ss_pred --hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 99999999999999999999876542 3357789999999999999999999999999874
Q ss_pred CCccCHHHHHHHHHhhcCCC
Q 030960 141 RYVILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 141 ~~~i~~~d~~~al~~~~p~~ 160 (168)
...|+.+||..|+...+|+.
T Consensus 257 ~~~i~~~d~~~a~~~~~~s~ 276 (297)
T 3b9p_A 257 MRAITEQDFHSSLKRIRRSV 276 (297)
T ss_dssp CCCCCHHHHHHHTTSCCCSS
T ss_pred cCCcCHHHHHHHHHHcCCCC
Confidence 25799999999999998864
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=158.22 Aligned_cols=154 Identities=29% Similarity=0.471 Sum_probs=125.7
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCC--CCCeEEEEecCCCCCCCccccCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQ--TVNVKVIMATNRADTLDPALLRP 79 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~v~vi~ttn~~~~ld~al~r~ 79 (168)
++.+|..|+..+|+||||||+|.++..+...... ...++.+.++..++++.. ..+++||+|||.++.+|+++++
T Consensus 196 ~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~- 271 (389)
T 3vfd_A 196 VRALFAVARELQPSIIFIDQVDSLLCERREGEHD---ASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR- 271 (389)
T ss_dssp HHHHHHHHHHSSSEEEEEETGGGGC--------C---THHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT-
T ss_pred HHHHHHHHHhcCCeEEEEECchhhcccCCCccch---HHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc-
Confidence 5789999999999999999999998776433222 234777888888887644 4579999999999999999999
Q ss_pred CCcceEEecCCCCHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhC------------C
Q 030960 80 GRLDRKIEFPLPDRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN------------R 141 (168)
Q Consensus 80 grf~~~i~~~~P~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~------------~ 141 (168)
||+..+++++|+.++|.+||+.++.. +.++..++..+.||+++||..+|+.|...++++. .
T Consensus 272 -R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~ 350 (389)
T 3vfd_A 272 -RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEM 350 (389)
T ss_dssp -TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCC
T ss_pred -CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhc
Confidence 99999999999999999999977652 2357789999999999999999999999999872 3
Q ss_pred CccCHHHHHHHHHhhcCCC
Q 030960 142 YVILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 142 ~~i~~~d~~~al~~~~p~~ 160 (168)
..|+.+||..+++...|+.
T Consensus 351 ~~i~~~d~~~al~~~~~s~ 369 (389)
T 3vfd_A 351 RNIRLSDFTESLKKIKRSV 369 (389)
T ss_dssp CCCCHHHHHHHHHHCCCSS
T ss_pred CCcCHHHHHHHHHHcCCCC
Confidence 4799999999999988864
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.81 E-value=1.5e-18 Score=151.41 Aligned_cols=156 Identities=38% Similarity=0.618 Sum_probs=135.4
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (168)
++.+|+.+....|+++|+||+|.++.+++... .....++...++..++++.....+++|++||.++.+|+++.++||
T Consensus 286 l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gR 362 (806)
T 1ypw_A 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGR 362 (806)
T ss_dssp HHHHHHHHHHHCSEEEEEESGGGTSCTTSCCC---SHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTS
T ss_pred HHHHHHHHHhcCCcEEEeccHHHhhhcccccc---chHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccc
Confidence 57899999999999999999999998774332 233457888999999998888899999999999999999999999
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCC---------------
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNR--------------- 141 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~--------------- 141 (168)
|+..+.++.|+.++|.++++.+.. .+.++..++..+.||+++|+..++.+|+..++++..
T Consensus 363 f~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~ 442 (806)
T 1ypw_A 363 FDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVM 442 (806)
T ss_dssp SCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHH
T ss_pred cccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhh
Confidence 999999999999999999996655 467899999999999999999999999998887532
Q ss_pred --CccCHHHHHHHHHhhcCCC
Q 030960 142 --YVILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 142 --~~i~~~d~~~al~~~~p~~ 160 (168)
..++.+|+..++....|+.
T Consensus 443 ~~~~v~~~d~~~al~~~~~s~ 463 (806)
T 1ypw_A 443 NSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp TTCCCCTTHHHHHHHHSCCCC
T ss_pred hhhhhhhhhhhccccccCchh
Confidence 3477889999999887754
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.78 E-value=1.2e-19 Score=141.61 Aligned_cols=123 Identities=25% Similarity=0.297 Sum_probs=90.7
Q ss_pred HHHHHHHH----HHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC-----------CCCCeEEEEec
Q 030960 2 VRDVFRLA----KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-----------QTVNVKVIMAT 66 (168)
Q Consensus 2 l~~iF~~a----~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vi~tt 66 (168)
++.+|..| +..+||||||||+|.+++.+++... .......+.+.|++.+|+.. ...+++||+||
T Consensus 84 i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~tt 162 (293)
T 3t15_A 84 IRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQ-YTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTG 162 (293)
T ss_dssp HHHHHHHHHHHHTTSSCCCEEEECCC---------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEEC
T ss_pred HHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCcc-ccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEec
Confidence 56788888 5778999999999999985533221 11123356677888877432 45679999999
Q ss_pred CCCCCCCccccCCCCcceEEecCCCCHHHHHHHHHhhcC-CCCCHHHHHhCCCCCCHHHHHH
Q 030960 67 NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS-DEVDLEDYVSRPDKISAAEIAA 127 (168)
Q Consensus 67 n~~~~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~-~~~~~~~la~~t~g~s~~di~~ 127 (168)
|+++.+|++++|||||+..++ .|+.++|.+|++.++. ..++++.++..++||+++||..
T Consensus 163 N~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 163 NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp SSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGGGCCCHHHHHHHHHHSCSCCHHH
T ss_pred CCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccCCCCCHHHHHHHhCCCCcccHHH
Confidence 999999999999999999997 5799999999997665 5789999999999999999974
No 30
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.71 E-value=4.9e-17 Score=104.74 Aligned_cols=74 Identities=23% Similarity=0.395 Sum_probs=68.4
Q ss_pred ecCCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcCCC
Q 030960 87 EFPLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 87 ~~~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~~ 160 (168)
.-.+|+.++|.+||+.++. .+++++.||+.|+||||+||+++|++|++.|+++....|+.+||..|+++++|..
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~~ 85 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 85 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccCC
Confidence 3479999999999997776 4789999999999999999999999999999999999999999999999998853
No 31
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.70 E-value=8.4e-17 Score=101.81 Aligned_cols=71 Identities=25% Similarity=0.445 Sum_probs=66.0
Q ss_pred CCCCHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcCC
Q 030960 89 PLPDRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 159 (168)
Q Consensus 89 ~~P~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~ 159 (168)
|+|+.++|.+||+.++. ++++++.+|+.|+||||+||.++|++|++.|++++...|+.+||..|++++..+
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 68999999999997776 578999999999999999999999999999999999999999999999988764
No 32
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.68 E-value=1e-16 Score=102.58 Aligned_cols=77 Identities=66% Similarity=1.087 Sum_probs=63.1
Q ss_pred CHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcCCCCCcccc
Q 030960 92 DRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEF 166 (168)
Q Consensus 92 ~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~~~~~~~~ 166 (168)
+.++|.+||+.++. +++++..+|+.|+||||+||.++|++|++.|++++...|+.+||..|+++++|+...++++
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~~~l~~ 81 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEF 81 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC--------
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCchHHHHh
Confidence 67899999997665 5789999999999999999999999999999999989999999999999999987777888
Q ss_pred cC
Q 030960 167 YK 168 (168)
Q Consensus 167 ~k 168 (168)
|+
T Consensus 82 y~ 83 (83)
T 3aji_B 82 YK 83 (83)
T ss_dssp --
T ss_pred cC
Confidence 75
No 33
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.61 E-value=2.5e-15 Score=97.12 Aligned_cols=69 Identities=26% Similarity=0.356 Sum_probs=62.5
Q ss_pred CHHHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcCCC
Q 030960 92 DRRQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 92 ~~~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~~ 160 (168)
|.++|.+||+.++. ++++++.||+.|+||||+||.++|++|++.|++++...|+.+||..|++++.+..
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~ 75 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGY 75 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCc
Confidence 56789999996665 5789999999999999999999999999999999999999999999999998865
No 34
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.57 E-value=2.7e-15 Score=95.70 Aligned_cols=75 Identities=52% Similarity=0.782 Sum_probs=50.3
Q ss_pred HHHHHHHHhhcC-----CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcC--CCCCcccc
Q 030960 94 RQKRLVFQMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK--KPDTDFEF 166 (168)
Q Consensus 94 ~~R~~il~~~l~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p--~~~~~~~~ 166 (168)
++|.+||+.++. ++++++.+|+.|+||||+||.++|++|++.|++++...|+.+||..|++++.+ ....++++
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~~~~~~~~ 80 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFDF 80 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC----------
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcCChHHHHh
Confidence 468899986664 57899999999999999999999999999999999999999999999999853 33567788
Q ss_pred cC
Q 030960 167 YK 168 (168)
Q Consensus 167 ~k 168 (168)
|+
T Consensus 81 y~ 82 (82)
T 2dzn_B 81 YK 82 (82)
T ss_dssp --
T ss_pred hC
Confidence 75
No 35
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.50 E-value=3.2e-17 Score=134.89 Aligned_cols=126 Identities=13% Similarity=0.203 Sum_probs=76.5
Q ss_pred HHHHHHHH---HHcCCeEEEEcccccccccccCCCCCcch-HHH---------------HHHHHHHHhcc--CCCCCCCe
Q 030960 2 VRDVFRLA---KENAPAIIFIDEVDAIATARFDAQTGADR-EVQ---------------RILMELLNQMD--GFDQTVNV 60 (168)
Q Consensus 2 l~~iF~~a---~~~~p~ii~iDe~D~l~~~~~~~~~~~~~-~~~---------------~~~~~ll~~l~--~~~~~~~v 60 (168)
++.+|..| +..+||||||||+|.++++++....+... ... ++.+.++..++ ++...+.+
T Consensus 112 ~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 191 (456)
T 2c9o_A 112 LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVI 191 (456)
T ss_dssp HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEE
T ss_pred HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEE
Confidence 46789998 78889999999999999888544221111 001 12233555554 33445557
Q ss_pred EEEEecCCCCCCCccccCCCCcce--EEecCCCC--HHHHHHHHHhhcCCCCCHHHHHhCCCCCCHHHHHHHHHH
Q 030960 61 KVIMATNRADTLDPALLRPGRLDR--KIEFPLPD--RRQKRLVFQMNLSDEVDLEDYVSRPDKISAAEIAAICQE 131 (168)
Q Consensus 61 ~vi~ttn~~~~ld~al~r~grf~~--~i~~~~P~--~~~R~~il~~~l~~~~~~~~la~~t~g~s~~di~~l~~~ 131 (168)
+|++|||+++.+|+++.||||||. .++++.|+ ..+|.+|++.+.. .+++.++..|+| |+||.++|..
T Consensus 192 ~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~--~dl~~~a~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 192 YIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL--HDLDVANARPQG--GQDILSMMGQ 262 (456)
T ss_dssp EEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH--HHHHHTC-----------------
T ss_pred EEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH--HHHHHHHHhCCC--hhHHHHHHhh
Confidence 777999999999999999999999 66777774 5788888875553 378999999999 9999999964
No 36
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.34 E-value=4.1e-12 Score=100.98 Aligned_cols=125 Identities=14% Similarity=0.186 Sum_probs=99.5
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEec-----------CCCCCCCccccCCCCc
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMAT-----------NRADTLDPALLRPGRL 82 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~tt-----------n~~~~ld~al~r~grf 82 (168)
|+||||||+|.+.. ...+.++..++. ...+++++++. |.+..+++++++ ||
T Consensus 190 ~~vl~IDEi~~l~~--------------~~~~~L~~~le~--~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~ 251 (368)
T 3uk6_A 190 PGVLFIDEVHMLDI--------------ESFSFLNRALES--DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RL 251 (368)
T ss_dssp BCEEEEESGGGSBH--------------HHHHHHHHHTTC--TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TE
T ss_pred CceEEEhhccccCh--------------HHHHHHHHHhhC--cCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hc
Confidence 78999999998741 445566666664 23345555554 358899999999 99
Q ss_pred ceEEecCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 83 DRKIEFPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 83 ~~~i~~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
.. +.|++|+.+++.++++..+. ++..+..++..+.|.+++++.++++.|...|..++...|+.+++.+++..+
T Consensus 252 ~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 252 LI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp EE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred cE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 77 79999999999999996553 122466788888878999999999999999999888999999999999874
Q ss_pred c
Q 030960 157 V 157 (168)
Q Consensus 157 ~ 157 (168)
.
T Consensus 331 ~ 331 (368)
T 3uk6_A 331 L 331 (368)
T ss_dssp B
T ss_pred c
Confidence 4
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.31 E-value=6.7e-12 Score=96.17 Aligned_cols=148 Identities=13% Similarity=0.127 Sum_probs=104.3
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC-CCCCeEEEEecCCCCCCCc-cccCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-QTVNVKVIMATNRADTLDP-ALLRP 79 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~v~vi~ttn~~~~ld~-al~r~ 79 (168)
++.+|+.+....|++|+|||+|.+++.+..... .. ..++..+...+++.. ...++++|+|||.++.+++ .+.+
T Consensus 113 ~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~-~~---~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~- 187 (272)
T 1d2n_A 113 MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPR-FS---NLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN- 187 (272)
T ss_dssp HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTB-CC---HHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT-
T ss_pred HHHHHHHHHhcCCcEEEEEChhhhhccCCCChh-HH---HHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc-
Confidence 467888888888999999999999876532221 12 255666666777654 3446889999999999998 5665
Q ss_pred CCcceEEecCCCCH-HHHHHHHHhhcC-CCCCHHHHHhCCCCC----CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 80 GRLDRKIEFPLPDR-RQKRLVFQMNLS-DEVDLEDYVSRPDKI----SAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 80 grf~~~i~~~~P~~-~~R~~il~~~l~-~~~~~~~la~~t~g~----s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
||+..+++|+++. ++...++..... .+..+..++..+.|| ..+++.++++.|... ......+++.+++
T Consensus 188 -rf~~~i~~p~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~-----~~~~~~~~~~~~l 261 (272)
T 1d2n_A 188 -AFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM-----DPEYRVRKFLALL 261 (272)
T ss_dssp -TSSEEEECCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS-----CGGGHHHHHHHHH
T ss_pred -ccceEEcCCCccHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh-----chHHHHHHHHHHH
Confidence 9999999987765 555566554321 344577889999998 677777777766432 2335667788888
Q ss_pred HhhcCCC
Q 030960 154 RTNVKKP 160 (168)
Q Consensus 154 ~~~~p~~ 160 (168)
......+
T Consensus 262 ~~~~~~~ 268 (272)
T 1d2n_A 262 REEGASP 268 (272)
T ss_dssp HHTSCCS
T ss_pred HHcCCcc
Confidence 7766543
No 38
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.29 E-value=1.2e-12 Score=109.75 Aligned_cols=142 Identities=18% Similarity=0.232 Sum_probs=93.8
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCC-------------CCCeEEEEecCCC
Q 030960 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQ-------------TVNVKVIMATNRA 69 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------------~~~v~vi~ttn~~ 69 (168)
...|..|....| |+||||+|.+...+.+ ...+.++..++.... ..++++|+|||.+
T Consensus 166 ~~~~~~a~~~~~-vl~lDEid~l~~~~~~----------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~ 234 (543)
T 3m6a_A 166 IQGMKKAGKLNP-VFLLDEIDKMSSDFRG----------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNL 234 (543)
T ss_dssp HHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSST
T ss_pred HHHHHHhhccCC-EEEEhhhhhhhhhhcc----------CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCcc
Confidence 456666666666 9999999999765421 123456666654321 1568999999999
Q ss_pred CCCCccccCCCCcceEEecCCCCHHHHHHHHHhhcCC-----------C--C---CHHHHHhCCCC-CCH----HHHHHH
Q 030960 70 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----------E--V---DLEDYVSRPDK-ISA----AEIAAI 128 (168)
Q Consensus 70 ~~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~~-----------~--~---~~~~la~~t~g-~s~----~di~~l 128 (168)
+.+|+++++ ||+ .|+++.|+.++|.+|++.++-+ . + .+..++....+ ... +.|+++
T Consensus 235 ~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~ 311 (543)
T 3m6a_A 235 ATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAI 311 (543)
T ss_dssp TTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHH
T ss_pred ccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHH
Confidence 999999999 995 7999999999999999876521 1 1 23344443332 233 455556
Q ss_pred HHHHHHHHHHh--CCCccCHHHHHHHHHhhcC
Q 030960 129 CQEAGMHAVRK--NRYVILPKDFEKGYRTNVK 158 (168)
Q Consensus 129 ~~~a~~~a~~~--~~~~i~~~d~~~al~~~~p 158 (168)
|+.++..+++. ....|+.+++.+++.....
T Consensus 312 ~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~~~ 343 (543)
T 3m6a_A 312 CRKAAKAIVAEERKRITVTEKNLQDFIGKRIF 343 (543)
T ss_dssp HHHHHHHHHTTCCSCCEECTTTTHHHHCSCCS
T ss_pred HHHHHHHHHhcCCcceecCHHHHHHHhCCccc
Confidence 66666655554 2447999999999975443
No 39
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.23 E-value=1.3e-11 Score=95.90 Aligned_cols=125 Identities=19% Similarity=0.235 Sum_probs=88.9
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC-----CCCcccc
Q 030960 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPALL 77 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~al~ 77 (168)
+.+|..+ .++||+|||+|.++..+++. ..+ ...++.|+..++. ...++.+|++||.+. .++|+++
T Consensus 123 ~~~~~~~---~~~vl~iDEid~l~~~~~~~--~~~---~~~~~~Ll~~l~~--~~~~~~~i~~~~~~~~~~~~~~~~~l~ 192 (309)
T 3syl_A 123 KEVLKRA---MGGVLFIDEAYYLYRPDNER--DYG---QEAIEILLQVMEN--NRDDLVVILAGYADRMENFFQSNPGFR 192 (309)
T ss_dssp HHHHHHH---TTSEEEEETGGGSCCCC-----CCT---HHHHHHHHHHHHH--CTTTCEEEEEECHHHHHHHHHHSTTHH
T ss_pred HHHHHhc---CCCEEEEEChhhhccCCCcc--ccc---HHHHHHHHHHHhc--CCCCEEEEEeCChHHHHHHHhhCHHHH
Confidence 4556655 57999999999998655321 112 2667777777773 345788889887654 3679999
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhcCC------CCCHHHHHhC------CCC-CCHHHHHHHHHHHHHHHHHh
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNLSD------EVDLEDYVSR------PDK-ISAAEIAAICQEAGMHAVRK 139 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l~~------~~~~~~la~~------t~g-~s~~di~~l~~~a~~~a~~~ 139 (168)
+ ||+..++|++|+.+++.+|++.++.. +..+..++.. +.+ -+++++.++++.|...+..+
T Consensus 193 ~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r 265 (309)
T 3syl_A 193 S--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANR 265 (309)
T ss_dssp H--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred H--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999999876652 1223444443 123 34899999999998765544
No 40
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.21 E-value=1e-10 Score=92.77 Aligned_cols=142 Identities=17% Similarity=0.162 Sum_probs=104.0
Q ss_pred HHHHHHHHc-CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCC---CCCCccccCC
Q 030960 4 DVFRLAKEN-APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA---DTLDPALLRP 79 (168)
Q Consensus 4 ~iF~~a~~~-~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~---~~ld~al~r~ 79 (168)
.+++.+... .|+||+|||+|.+...+ .....+..++..++......++.+|++||.+ +.+++.+.+
T Consensus 120 ~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~- 189 (387)
T 2v1u_A 120 RLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKS- 189 (387)
T ss_dssp HHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHT-
T ss_pred HHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHh-
Confidence 344444433 38999999999986432 1235666777777654325578899999988 789999998
Q ss_pred CCcce-EEecCCCCHHHHHHHHHhhcC--------CCCCHHHHHhCCC---CCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 030960 80 GRLDR-KIEFPLPDRRQKRLVFQMNLS--------DEVDLEDYVSRPD---KISAAEIAAICQEAGMHAVRKNRYVILPK 147 (168)
Q Consensus 80 grf~~-~i~~~~P~~~~R~~il~~~l~--------~~~~~~~la~~t~---g~s~~di~~l~~~a~~~a~~~~~~~i~~~ 147 (168)
||.. .+.+++|+.+++.++++..+. ++..+..++..+. | .++.+.++++.|...+...+...|+.+
T Consensus 190 -r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~ 267 (387)
T 2v1u_A 190 -SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRRE 267 (387)
T ss_dssp -TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHH
T ss_pred -cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHH
Confidence 9986 899999999999999985543 1223556666665 5 678888999999888887788889999
Q ss_pred HHHHHHHhhc
Q 030960 148 DFEKGYRTNV 157 (168)
Q Consensus 148 d~~~al~~~~ 157 (168)
++.+++....
T Consensus 268 ~v~~a~~~~~ 277 (387)
T 2v1u_A 268 HVYSARAEIE 277 (387)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 41
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.17 E-value=3.6e-10 Score=88.84 Aligned_cols=130 Identities=18% Similarity=0.205 Sum_probs=100.2
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC----------------CCCCeEEEEecCCCCCCCcc
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD----------------QTVNVKVIMATNRADTLDPA 75 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~v~vi~ttn~~~~ld~a 75 (168)
..+++|||||+|.+.. .....++..++... ..+++.+|++||....++++
T Consensus 105 ~~~~vl~lDEi~~l~~--------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~ 170 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSP--------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNP 170 (338)
T ss_dssp CTTCEEEEETGGGCCH--------------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHH
T ss_pred cCCCEEEEechhhcCH--------------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHH
Confidence 4589999999998841 23334444444321 11248999999999999999
Q ss_pred ccCCCCcceEEecCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 030960 76 LLRPGRLDRKIEFPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 149 (168)
Q Consensus 76 l~r~grf~~~i~~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~ 149 (168)
+++ ||+..+.+++|+.+++..+++.... ++..+..++..+.| +++++.++++.+...+...+...|+.+++
T Consensus 171 L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~ 247 (338)
T 3pfi_A 171 LRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFADVNDEEIITEKRA 247 (338)
T ss_dssp HHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred HHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHhhcCCccCHHHH
Confidence 999 9999999999999999999986654 22345677886655 67899999999988887777788999999
Q ss_pred HHHHHhhcC
Q 030960 150 EKGYRTNVK 158 (168)
Q Consensus 150 ~~al~~~~p 158 (168)
..++.....
T Consensus 248 ~~~~~~~~~ 256 (338)
T 3pfi_A 248 NEALNSLGV 256 (338)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhCC
Confidence 999887543
No 42
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.14 E-value=1.2e-10 Score=90.05 Aligned_cols=142 Identities=18% Similarity=0.213 Sum_probs=100.0
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC--------CCCCeEEEEe----cCCCCCCCccccCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD--------QTVNVKVIMA----TNRADTLDPALLRPG 80 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~v~vi~t----tn~~~~ld~al~r~g 80 (168)
.++||+|||+|.+....... ..+.....+.+.|+..+++.. ...++++|++ ++.+..+++++++
T Consensus 116 ~~~vl~iDEi~~l~~~~~~~--~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~-- 191 (310)
T 1ofh_A 116 QNGIVFIDEIDKICKKGEYS--GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG-- 191 (310)
T ss_dssp HHCEEEEECGGGGSCCSSCC--SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--
T ss_pred CCCEEEEEChhhcCcccccc--ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--
Confidence 47999999999998665322 222223345667777777531 2346788888 5688999999998
Q ss_pred CcceEEecCCCCHHHHHHHHHhhc-------------C------CCCCHHHHHhCC-------CCCCHHHHHHHHHHHHH
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQMNL-------------S------DEVDLEDYVSRP-------DKISAAEIAAICQEAGM 134 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~~~l-------------~------~~~~~~~la~~t-------~g~s~~di~~l~~~a~~ 134 (168)
||+..++|++|+.+++.+|++... . ++..+..+++.+ ++...+.+.++++.+..
T Consensus 192 R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~ 271 (310)
T 1ofh_A 192 RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 271 (310)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSH
T ss_pred hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHH
Confidence 999999999999999999998421 1 111244556554 36788999999998765
Q ss_pred HHHHhC-----CC-ccCHHHHHHHHHhhcC
Q 030960 135 HAVRKN-----RY-VILPKDFEKGYRTNVK 158 (168)
Q Consensus 135 ~a~~~~-----~~-~i~~~d~~~al~~~~p 158 (168)
.+..+. .. .|+.+++.+++.....
T Consensus 272 ~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 272 KISFSASDMNGQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp HHHHHGGGCTTCEEEECHHHHHHHTCSSSS
T ss_pred hhhcCCccccCCEEEEeeHHHHHHHHhhhh
Confidence 443221 11 4999999999987543
No 43
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.08 E-value=2.8e-10 Score=93.19 Aligned_cols=130 Identities=14% Similarity=0.150 Sum_probs=94.6
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC---CCccccCCCCcc--eEEe
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT---LDPALLRPGRLD--RKIE 87 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~---ld~al~r~grf~--~~i~ 87 (168)
.|.||+|||+|.+...+ .....++..++.+...+..+||++.+.+.. +++++++ ||. ..+.
T Consensus 194 ~~~vL~IDEi~~l~~~~------------~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~ 259 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKT------------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAK 259 (440)
T ss_dssp TCSEEEEECGGGGSSCH------------HHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCB
T ss_pred CCCEEEEeCcccccCCh------------HHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEE
Confidence 69999999999986432 111122222222223345556655555555 8899999 986 8899
Q ss_pred cCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcC
Q 030960 88 FPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158 (168)
Q Consensus 88 ~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 158 (168)
+++|+.++|.++++..+. ++..+..++..+.| +++++.++++.+...+...+ ..|+.+++.++++...+
T Consensus 260 l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~~-~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 260 LEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTG-KEVDLKEAILLLKDFIK 334 (440)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHSS-SCCCHHHHHHHTSTTTC
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhh
Confidence 999999999999986543 23346778888865 89999999999988876655 46999999999988763
No 44
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.08 E-value=5.6e-10 Score=87.02 Aligned_cols=129 Identities=16% Similarity=0.100 Sum_probs=96.0
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC----------------CCCCeEEEEecCCCCCCCcc
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD----------------QTVNVKVIMATNRADTLDPA 75 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~v~vi~ttn~~~~ld~a 75 (168)
..+++|||||+|.+... ....++..++... ...++.+|++||.+..++++
T Consensus 89 ~~~~~l~lDEi~~l~~~--------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~ 154 (324)
T 1hqc_A 89 EEGDILFIDEIHRLSRQ--------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAP 154 (324)
T ss_dssp CTTCEEEETTTTSCCHH--------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCS
T ss_pred cCCCEEEEECCcccccc--------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHH
Confidence 45899999999987421 1222333332210 11358899999999999999
Q ss_pred ccCCCCcceEEecCCCCHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 030960 76 LLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 149 (168)
Q Consensus 76 l~r~grf~~~i~~~~P~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~ 149 (168)
+.+ ||+..+.+++|+.+++..+++.+... +..+..++..+.| .++++.++++.+...+...+...|+.+++
T Consensus 155 l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~ 231 (324)
T 1hqc_A 155 LLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFAQVAGEEVITRERA 231 (324)
T ss_dssp TTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTTSTTTSCSCCCHHHH
T ss_pred HHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 998 99999999999999999999866531 2235677888866 56899999998877776666678999999
Q ss_pred HHHHHhhc
Q 030960 150 EKGYRTNV 157 (168)
Q Consensus 150 ~~al~~~~ 157 (168)
..++....
T Consensus 232 ~~~~~~~~ 239 (324)
T 1hqc_A 232 LEALAALG 239 (324)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 88887654
No 45
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.07 E-value=4.2e-10 Score=97.56 Aligned_cols=145 Identities=19% Similarity=0.225 Sum_probs=102.4
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCC-----CCCCccc
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA-----DTLDPAL 76 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~-----~~ld~al 76 (168)
++.+|+.+....++||||||+|.+++.++.... .. ... +.+..+.....+.+|++||.+ ..+|+++
T Consensus 267 l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~--~~---~~~----~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL 337 (758)
T 1r6b_X 267 FKALLKQLEQDTNSILFIDEIHTIIGAGAASGG--QV---DAA----NLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRAL 337 (758)
T ss_dssp HHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC--HH---HHH----HHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSS
T ss_pred HHHHHHHHHhcCCeEEEEechHHHhhcCCCCcc--hH---HHH----HHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHH
Confidence 567888888878999999999999876532211 11 222 223333445678899999864 3688999
Q ss_pred cCCCCcceEEecCCCCHHHHHHHHHhhcCC----------CCCHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHH---
Q 030960 77 LRPGRLDRKIEFPLPDRRQKRLVFQMNLSD----------EVDLEDYVSRP-----DKISAAEIAAICQEAGMHAVR--- 138 (168)
Q Consensus 77 ~r~grf~~~i~~~~P~~~~R~~il~~~l~~----------~~~~~~la~~t-----~g~s~~di~~l~~~a~~~a~~--- 138 (168)
.+ ||+ .+.|+.|+.++|.+|++..... +..+..++..+ ..+.+..+..++.+|...+..
T Consensus 338 ~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~ 414 (758)
T 1r6b_X 338 AR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPV 414 (758)
T ss_dssp GG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSS
T ss_pred Hh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccc
Confidence 99 998 6999999999999999854321 11234444443 446778888899888765544
Q ss_pred -hCCCccCHHHHHHHHHhhcC
Q 030960 139 -KNRYVILPKDFEKGYRTNVK 158 (168)
Q Consensus 139 -~~~~~i~~~d~~~al~~~~p 158 (168)
.....++.+|+.+++.....
T Consensus 415 ~~~~~~v~~~di~~~~~~~~~ 435 (758)
T 1r6b_X 415 SKRKKTVNVADIESVVARIAR 435 (758)
T ss_dssp CCCCCSCCHHHHHHHHHHHSC
T ss_pred cccCCccCHHHHHHHHHHhcC
Confidence 23467999999999988754
No 46
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.04 E-value=8.5e-10 Score=81.44 Aligned_cols=117 Identities=17% Similarity=0.198 Sum_probs=90.4
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
.|.+|+|||+|.+.. ...+.++..++. ...++.+|++||.+..+++++.+ |+ ..+++++|+
T Consensus 126 ~~~vlviDe~~~l~~--------------~~~~~l~~~l~~--~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~ 186 (250)
T 1njg_A 126 RFKVYLIDEVHMLSR--------------HSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALD 186 (250)
T ss_dssp SSEEEEEETGGGSCH--------------HHHHHHHHHHHS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCC
T ss_pred CceEEEEECcccccH--------------HHHHHHHHHHhc--CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCC
Confidence 489999999998731 234556666653 34578899999999999999988 75 789999999
Q ss_pred HHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 93 RRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 93 ~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
.++..++++..+. ++..+..+++.+.| .++.+.++++.+... +...|+.+++.+++
T Consensus 187 ~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 187 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 9999999986663 12236678888977 899999999877432 34479999999876
No 47
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.01 E-value=3.5e-10 Score=84.08 Aligned_cols=126 Identities=13% Similarity=0.089 Sum_probs=87.4
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCe-EEEEecCCCC---CCCccccCCCCcc--eEE
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV-KVIMATNRAD---TLDPALLRPGRLD--RKI 86 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v-~vi~ttn~~~---~ld~al~r~grf~--~~i 86 (168)
.|.+|+|||+|.+.... ..... ++..++.......+ +|++++..+. .+++++.+ ||. ..+
T Consensus 104 ~~~vliiDe~~~~~~~~---------~~~~~---l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i 169 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHP---------LWEEA---IFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTY 169 (242)
T ss_dssp GSSEEEEETGGGGTTCH---------HHHHH---HHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEE
T ss_pred CCCEEEEeccccccCCH---------HHHHH---HHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceE
Confidence 48999999999885321 01122 22222222223334 5555555554 45678888 886 899
Q ss_pred ecCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 87 EFPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 87 ~~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
++++|+.+++.++++..+. ++..++.++..+.| +.+++.++++.+...+...+ ..|+.+++.++++
T Consensus 170 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 170 QLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp ECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred EeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 9999999999999987653 12235667888866 89999999999988886554 4699999999875
No 48
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.98 E-value=1.7e-09 Score=79.00 Aligned_cols=118 Identities=16% Similarity=0.121 Sum_probs=87.2
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCC
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P 91 (168)
..|.+|+|||+|.+... ....++..++. ...++.+|++||.+..+++++.+ ||. .+.+++|
T Consensus 101 ~~~~vliiDe~~~l~~~--------------~~~~l~~~l~~--~~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~ 161 (226)
T 2chg_A 101 APFKIIFLDEADALTAD--------------AQAALRRTMEM--YSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPV 161 (226)
T ss_dssp CSCEEEEEETGGGSCHH--------------HHHHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCC
T ss_pred cCceEEEEeChhhcCHH--------------HHHHHHHHHHh--cCCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCC
Confidence 46899999999987421 12334444442 23467889999999999999999 988 8999999
Q ss_pred CHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 92 DRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 92 ~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
+.++..++++..+. ++..+..+++.+.| .++.+.++++.++..+ ..|+.+|+.+++.
T Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 162 PKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp CHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 99999999986553 12235567776655 6777777777665543 5799999999875
No 49
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.97 E-value=1.6e-09 Score=85.77 Aligned_cols=142 Identities=17% Similarity=0.182 Sum_probs=100.4
Q ss_pred HHHHHHHHHcC-CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCC---CCCCccccC
Q 030960 3 RDVFRLAKENA-PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA---DTLDPALLR 78 (168)
Q Consensus 3 ~~iF~~a~~~~-p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~---~~ld~al~r 78 (168)
+.+++...... |+||+|||+|.+....+ . ..+..++..++.+ ...++.+|++|+.+ ..+++.+.+
T Consensus 117 ~~l~~~l~~~~~~~vlilDE~~~l~~~~~-----~-----~~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~ 185 (386)
T 2qby_A 117 RRLVKAVRDYGSQVVIVLDEIDAFVKKYN-----D-----DILYKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKS 185 (386)
T ss_dssp HHHHHHHHTCCSCEEEEEETHHHHHHSSC-----S-----THHHHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHH
T ss_pred HHHHHHHhccCCeEEEEEcChhhhhccCc-----C-----HHHHHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhc
Confidence 34445554444 99999999999864321 1 3455666666544 34578889999887 578888888
Q ss_pred CCCcc-eEEecCCCCHHHHHHHHHhhcC-----CCC---CHHHHHhCCCC--CCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 030960 79 PGRLD-RKIEFPLPDRRQKRLVFQMNLS-----DEV---DLEDYVSRPDK--ISAAEIAAICQEAGMHAVRKNRYVILPK 147 (168)
Q Consensus 79 ~grf~-~~i~~~~P~~~~R~~il~~~l~-----~~~---~~~~la~~t~g--~s~~di~~l~~~a~~~a~~~~~~~i~~~ 147 (168)
||. ..+.+++++.++..++++..+. ..+ .+..++..+.. -.++.+.+++..|...+...+...|+.+
T Consensus 186 --r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~ 263 (386)
T 2qby_A 186 --SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEE 263 (386)
T ss_dssp --TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHH
T ss_pred --cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHH
Confidence 776 5899999999999999986443 112 23445555541 3677777899999888887777889999
Q ss_pred HHHHHHHhhc
Q 030960 148 DFEKGYRTNV 157 (168)
Q Consensus 148 d~~~al~~~~ 157 (168)
++..++....
T Consensus 264 ~v~~a~~~~~ 273 (386)
T 2qby_A 264 YVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887654
No 50
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.96 E-value=8.9e-09 Score=80.75 Aligned_cols=128 Identities=20% Similarity=0.161 Sum_probs=92.7
Q ss_pred eEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC---------CCCCCeEEEEecCCCC-----CCCccccCCC
Q 030960 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF---------DQTVNVKVIMATNRAD-----TLDPALLRPG 80 (168)
Q Consensus 15 ~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~v~vi~ttn~~~-----~ld~al~r~g 80 (168)
+|++|||+|.+.+ ...+.++..++.- ....++++|+|+|..+ .+++++++
T Consensus 111 ~vl~iDEi~~~~~--------------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~-- 174 (331)
T 2r44_A 111 NFILADEVNRSPA--------------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD-- 174 (331)
T ss_dssp SEEEEETGGGSCH--------------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--
T ss_pred cEEEEEccccCCH--------------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--
Confidence 7999999998631 2233344444321 1234677888888433 38999999
Q ss_pred CcceEEecCCCCHHHHHHHHHhhcCCC-----------------------C-----CHHHHHhC----------------
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQMNLSDE-----------------------V-----DLEDYVSR---------------- 116 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~~~l~~~-----------------------~-----~~~~la~~---------------- 116 (168)
||+..+.+++|+.++|.+|++...... + .++.++..
T Consensus 175 Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~ 254 (331)
T 2r44_A 175 RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEA 254 (331)
T ss_dssp TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHH
T ss_pred heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccc
Confidence 999999999999999999998665421 1 12233221
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcC
Q 030960 117 ---PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158 (168)
Q Consensus 117 ---t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 158 (168)
..|.|++.+.++++.|...|...+...++.+|+.+++..+..
T Consensus 255 ~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~ 299 (331)
T 2r44_A 255 SYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILN 299 (331)
T ss_dssp HHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHT
T ss_pred cccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhH
Confidence 126799999999999988888888888999999999987654
No 51
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.94 E-value=9.3e-09 Score=80.82 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=90.0
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC-------CC----CCCCeEEEEecCCCC-CCCccccCCCC
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-------FD----QTVNVKVIMATNRAD-TLDPALLRPGR 81 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-------~~----~~~~v~vi~ttn~~~-~ld~al~r~gr 81 (168)
+++|+|||+|.+.. ...+.++..++. .. ...++.+|+|||..+ .+++++++ |
T Consensus 145 ~~vl~iDEi~~l~~--------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R 208 (350)
T 1g8p_A 145 RGYLYIDECNLLED--------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--R 208 (350)
T ss_dssp TEEEEETTGGGSCH--------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--T
T ss_pred CCEEEEeChhhCCH--------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--h
Confidence 78999999998742 122233333321 11 113688999999744 89999999 9
Q ss_pred cceEEecCCC-CHHHHHHHHHhhcC-----------------------------------CCCCHHHHHhCC---CCCCH
Q 030960 82 LDRKIEFPLP-DRRQKRLVFQMNLS-----------------------------------DEVDLEDYVSRP---DKISA 122 (168)
Q Consensus 82 f~~~i~~~~P-~~~~R~~il~~~l~-----------------------------------~~~~~~~la~~t---~g~s~ 122 (168)
|+..+.+++| +.++|.+|++..+. ++..+..++... .+-++
T Consensus 209 ~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~ 288 (350)
T 1g8p_A 209 FGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGL 288 (350)
T ss_dssp CSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSH
T ss_pred cceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCc
Confidence 9999999999 67888788865210 111122333333 22378
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 123 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 123 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
+.+.++++.|...|..++...|+.+|+.+++....
T Consensus 289 R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l 323 (350)
T 1g8p_A 289 RGELTLLRSARALAALEGATAVGRDHLKRVATMAL 323 (350)
T ss_dssp HHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHH
Confidence 99999999999988888888899999999998654
No 52
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.92 E-value=7.1e-11 Score=96.62 Aligned_cols=87 Identities=17% Similarity=0.109 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEe-cCCCCCCCccccCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMA-TNRADTLDPALLRPG 80 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~t-tn~~~~ld~al~r~g 80 (168)
++.+|+.|....| +||+|.+.... ......++++.|+.+||++.....+ +++ ||+++.||++|+|||
T Consensus 100 lr~lf~~a~~~~~----~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~rgg 167 (444)
T 1g41_A 100 IRDLTDSAMKLVR----QQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLREGQ 167 (444)
T ss_dssp HHHHHHHHHHHHH----HHHHHSCC-------------------------------------------------------
T ss_pred HHHHHHHHHhcch----hhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHcCC
Confidence 5778888877643 78888765322 1122358999999999998766554 455 999999999999999
Q ss_pred CcceEEecCCCCHH-HHHHHH
Q 030960 81 RLDRKIEFPLPDRR-QKRLVF 100 (168)
Q Consensus 81 rf~~~i~~~~P~~~-~R~~il 100 (168)
|||+.|++++|+.. .|.+|+
T Consensus 168 r~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 168 LDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ---------------------
T ss_pred CcceEEEEcCCCCccchhhhh
Confidence 99999999999998 788876
No 53
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.90 E-value=3e-09 Score=84.58 Aligned_cols=133 Identities=25% Similarity=0.313 Sum_probs=94.0
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHH-HHHHHHhccCCCCCCCeEEEEecCCC---CCCCccccCC
Q 030960 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRI-LMELLNQMDGFDQTVNVKVIMATNRA---DTLDPALLRP 79 (168)
Q Consensus 4 ~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~-~~~ll~~l~~~~~~~~v~vi~ttn~~---~~ld~al~r~ 79 (168)
.++..++... .||+|||+|.+.... . . .. +..++... .++.+|++||.+ +.+++++.+
T Consensus 125 ~l~~~l~~~~-~vlilDEi~~l~~~~-----~-~----~~~l~~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s- 186 (384)
T 2qby_B 125 KIKNGTRNIR-AIIYLDEVDTLVKRR-----G-G----DIVLYQLLRSD------ANISVIMISNDINVRDYMEPRVLS- 186 (384)
T ss_dssp HHHHHHSSSC-EEEEEETTHHHHHST-----T-S----HHHHHHHHTSS------SCEEEEEECSSTTTTTTSCHHHHH-
T ss_pred HHHHHhccCC-CEEEEECHHHhccCC-----C-C----ceeHHHHhcCC------cceEEEEEECCCchHhhhCHHHHh-
Confidence 3444444444 499999999986432 0 1 23 44443332 688999999987 789999998
Q ss_pred CCcceEEecCCCCHHHHHHHHHhhcC--------CCCCHHHHHhCCCC--CCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 030960 80 GRLDRKIEFPLPDRRQKRLVFQMNLS--------DEVDLEDYVSRPDK--ISAAEIAAICQEAGMHAVRKNRYVILPKDF 149 (168)
Q Consensus 80 grf~~~i~~~~P~~~~R~~il~~~l~--------~~~~~~~la~~t~g--~s~~di~~l~~~a~~~a~~~~~~~i~~~d~ 149 (168)
||...+.+++|+.+++.++++..+. ++..+..++..+.+ -.++.+.++++.|...+. +...|+.+++
T Consensus 187 -r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v 263 (384)
T 2qby_B 187 -SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHV 263 (384)
T ss_dssp -TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHH
T ss_pred -cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHH
Confidence 9988999999999999999986543 12234556666652 245667778888877665 5567999999
Q ss_pred HHHHHhhc
Q 030960 150 EKGYRTNV 157 (168)
Q Consensus 150 ~~al~~~~ 157 (168)
..++....
T Consensus 264 ~~~~~~~~ 271 (384)
T 2qby_B 264 DKAIVDYE 271 (384)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988754
No 54
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.88 E-value=5.9e-09 Score=82.82 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=100.2
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCC--CCCeEEEEecCCC---CCCCccccCCCCcce-E
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQ--TVNVKVIMATNRA---DTLDPALLRPGRLDR-K 85 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~v~vi~ttn~~---~~ld~al~r~grf~~-~ 85 (168)
..|.||+|||+|.+- ...+..++..++.+.. ..++.+|++||.+ +.+++.+.+ ||.. .
T Consensus 124 ~~~~vlilDE~~~l~--------------~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~ 187 (389)
T 1fnn_A 124 DLYMFLVLDDAFNLA--------------PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYV 187 (389)
T ss_dssp TCCEEEEEETGGGSC--------------HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCE
T ss_pred CCeEEEEEECccccc--------------hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCce
Confidence 459999999999881 1455566666654332 2478899999988 778888888 8875 8
Q ss_pred EecCCCCHHHHHHHHHhhcCC-----CC---CHHHHHhCCC--------CCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 030960 86 IEFPLPDRRQKRLVFQMNLSD-----EV---DLEDYVSRPD--------KISAAEIAAICQEAGMHAVRKNRYVILPKDF 149 (168)
Q Consensus 86 i~~~~P~~~~R~~il~~~l~~-----~~---~~~~la~~t~--------g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~ 149 (168)
+.+++++.++..++++..+.. .+ .+..++..+. +-.++.+.++++.|...+..++...++.+++
T Consensus 188 i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v 267 (389)
T 1fnn_A 188 IRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDV 267 (389)
T ss_dssp EECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Confidence 999999999999999855431 22 3456777773 2267889999999999888888888999999
Q ss_pred HHHHHhhcC
Q 030960 150 EKGYRTNVK 158 (168)
Q Consensus 150 ~~al~~~~p 158 (168)
..++.....
T Consensus 268 ~~~~~~~~~ 276 (389)
T 1fnn_A 268 RKSSKEVLF 276 (389)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHhh
Confidence 999987654
No 55
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.88 E-value=5.9e-09 Score=83.00 Aligned_cols=149 Identities=16% Similarity=0.195 Sum_probs=97.5
Q ss_pred HHHHHHH----HHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC-------------------CCCC
Q 030960 3 RDVFRLA----KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-------------------QTVN 59 (168)
Q Consensus 3 ~~iF~~a----~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------------------~~~~ 59 (168)
+.+|..+ ....|+||||||+|.+...+.+...+.......+.+.|+..|++.. ...+
T Consensus 102 ~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn 181 (363)
T 3hws_A 102 QKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSK 181 (363)
T ss_dssp HHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTS
T ss_pred HHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCC
Confidence 4555554 4456899999999999987755544444444568888888888421 2234
Q ss_pred eEEEEecCCC----------CC-----------------------------------CCccccCCCCcceEEecCCCCHH
Q 030960 60 VKVIMATNRA----------DT-----------------------------------LDPALLRPGRLDRKIEFPLPDRR 94 (168)
Q Consensus 60 v~vi~ttn~~----------~~-----------------------------------ld~al~r~grf~~~i~~~~P~~~ 94 (168)
+++|+++|.. .. +.|++.. ||+..+.+.+|+.+
T Consensus 182 ~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~ 259 (363)
T 3hws_A 182 ILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEE 259 (363)
T ss_dssp SEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHH
T ss_pred ceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHH
Confidence 4555555532 11 6788887 99999999999999
Q ss_pred HHHHHHHhhcC-------------------CCCCHHHHHh--CCCCCCHHHHHHHHHHHHHHHHHhCC-------CccCH
Q 030960 95 QKRLVFQMNLS-------------------DEVDLEDYVS--RPDKISAAEIAAICQEAGMHAVRKNR-------YVILP 146 (168)
Q Consensus 95 ~R~~il~~~l~-------------------~~~~~~~la~--~t~g~s~~di~~l~~~a~~~a~~~~~-------~~i~~ 146 (168)
++.+|++..+. .+..++.+++ ....+..++|.++++.+...++.+.. ..|+.
T Consensus 260 ~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~~~~~~I~~ 339 (363)
T 3hws_A 260 ALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDE 339 (363)
T ss_dssp HHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCCSEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccCCceeEEcH
Confidence 99999985211 1112445654 34556778999999998888776642 14666
Q ss_pred HHHHHHH
Q 030960 147 KDFEKGY 153 (168)
Q Consensus 147 ~d~~~al 153 (168)
+++.+.+
T Consensus 340 ~~v~~~~ 346 (363)
T 3hws_A 340 SVIDGQS 346 (363)
T ss_dssp HHTTCCS
T ss_pred HHHhCcC
Confidence 6665544
No 56
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.74 E-value=1.2e-08 Score=83.64 Aligned_cols=136 Identities=17% Similarity=0.183 Sum_probs=94.1
Q ss_pred HHHHHHHHHH----cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEec--CCCCCCCcc
Q 030960 2 VRDVFRLAKE----NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMAT--NRADTLDPA 75 (168)
Q Consensus 2 l~~iF~~a~~----~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~tt--n~~~~ld~a 75 (168)
++.+|..+.. ..+.||||||+|.+... ....|+..++. ..+.+|++| |....++++
T Consensus 91 ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~----~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 91 IREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED----GTITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEEESSCGGGSSCHH
T ss_pred HHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc----CceEEEecCCCCcccccCHH
Confidence 4566666653 35899999999988422 12235555552 356666655 334589999
Q ss_pred ccCCCCcceEEecCCCCHHHHHHHHHhhcCC-------------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHh--C
Q 030960 76 LLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-------------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK--N 140 (168)
Q Consensus 76 l~r~grf~~~i~~~~P~~~~R~~il~~~l~~-------------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~--~ 140 (168)
+++ |+. .+.+++|+.+++..+++..+.. +..++.++..+.| ..+++.++++.++..+... +
T Consensus 153 L~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~a~~~~~~ 228 (447)
T 3pvs_A 153 LLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADMAEVDDSG 228 (447)
T ss_dssp HHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHSCBCTTS
T ss_pred HhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccccCC
Confidence 999 886 7789999999999999866542 1125567777554 7788888888887766423 4
Q ss_pred CCccCHHHHHHHHHhhcCC
Q 030960 141 RYVILPKDFEKGYRTNVKK 159 (168)
Q Consensus 141 ~~~i~~~d~~~al~~~~p~ 159 (168)
...|+.+++.+++......
T Consensus 229 ~~~It~e~v~~~l~~~~~~ 247 (447)
T 3pvs_A 229 KRVLKPELLTEIAGERSAR 247 (447)
T ss_dssp CEECCHHHHHHHHTCCCCC
T ss_pred CCccCHHHHHHHHhhhhhc
Confidence 4679999999999876543
No 57
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.71 E-value=2.3e-08 Score=77.39 Aligned_cols=115 Identities=19% Similarity=0.271 Sum_probs=81.5
Q ss_pred HHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC---------CCCCeEEEEecCC----------
Q 030960 8 LAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD---------QTVNVKVIMATNR---------- 68 (168)
Q Consensus 8 ~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vi~ttn~---------- 68 (168)
......++||+|||+|.+.. .+.+.++..++.-. ...++++|+|||.
T Consensus 114 ~~~~~~~~vl~lDEi~~l~~--------------~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~ 179 (311)
T 4fcw_A 114 AVRRRPYSVILFDAIEKAHP--------------DVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQ 179 (311)
T ss_dssp HHHHCSSEEEEEETGGGSCH--------------HHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTT
T ss_pred HHHhCCCeEEEEeChhhcCH--------------HHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhc
Confidence 33444569999999998731 34445555554211 1136789999998
Q ss_pred ----------------CCCCCccccCCCCcceEEecCCCCHHHHHHHHHhhcCC---------------CCCHHHHHhCC
Q 030960 69 ----------------ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD---------------EVDLEDYVSRP 117 (168)
Q Consensus 69 ----------------~~~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~~---------------~~~~~~la~~t 117 (168)
...++++++. ||+..+.+++|+.+++..|++.++.. +..+..+++..
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 257 (311)
T 4fcw_A 180 KGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERG 257 (311)
T ss_dssp SCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHS
T ss_pred ccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhC
Confidence 5578889998 99999999999999999999876642 11344566544
Q ss_pred C--CCCHHHHHHHHHHHHHHHHH
Q 030960 118 D--KISAAEIAAICQEAGMHAVR 138 (168)
Q Consensus 118 ~--g~s~~di~~l~~~a~~~a~~ 138 (168)
- ....++|.++++.+...+..
T Consensus 258 ~~~~gn~R~L~~~i~~~~~~~~~ 280 (311)
T 4fcw_A 258 YDPVFGARPLRRVIQRELETPLA 280 (311)
T ss_dssp CBTTTBTTTHHHHHHHHTHHHHH
T ss_pred CCccCCchhHHHHHHHHHHHHHH
Confidence 3 57789999999988766554
No 58
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.70 E-value=1e-08 Score=80.24 Aligned_cols=128 Identities=11% Similarity=0.170 Sum_probs=87.4
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC---CCCccccCCCCcc--eEEe
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD---TLDPALLRPGRLD--RKIE 87 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~---~ld~al~r~grf~--~~i~ 87 (168)
.|.+|+|||+|.+..++ .....+..+++.+ ...+..+|+++++.+. .+++++.+ ||+ ..+.
T Consensus 98 ~~~vL~iDEi~~l~~~~---------~~~~~l~~~l~~~---~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~ 163 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKE---------RTQIEFFHIFNTL---YLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVE 163 (324)
T ss_dssp TCSEEEEECGGGGTTCH---------HHHHHHHHHHHHH---HHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEE
T ss_pred CCCEEEEcCcccccCCh---------HHHHHHHHHHHHH---HHCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEE
Confidence 48999999999986432 1112222222222 2334567777777776 68999999 987 7899
Q ss_pred cCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHH---HHH-hCCCcc-CHHHHHHHHHhh
Q 030960 88 FPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMH---AVR-KNRYVI-LPKDFEKGYRTN 156 (168)
Q Consensus 88 ~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~---a~~-~~~~~i-~~~d~~~al~~~ 156 (168)
+++ +.++|.++++..+. ++..++.++..+ -..+++.++++.+... +++ .....+ +.+++.+++...
T Consensus 164 l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~ 240 (324)
T 1l8q_A 164 IEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANY 240 (324)
T ss_dssp CCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHHH
Confidence 999 99999999986653 122356788888 4778899988887655 111 223458 889999888764
Q ss_pred c
Q 030960 157 V 157 (168)
Q Consensus 157 ~ 157 (168)
.
T Consensus 241 ~ 241 (324)
T 1l8q_A 241 Y 241 (324)
T ss_dssp H
T ss_pred h
Confidence 4
No 59
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.69 E-value=6.6e-08 Score=79.34 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=95.5
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEe---------cC---CCCCCCccccCCCC
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMA---------TN---RADTLDPALLRPGR 81 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~t---------tn---~~~~ld~al~r~gr 81 (168)
|.|++|||+|.+- ....+.|+..++.. ..++++++| |+ .+..+++.+++ |
T Consensus 296 ~~VliIDEa~~l~--------------~~a~~aLlk~lEe~--~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R 357 (456)
T 2c9o_A 296 PGVLFVDEVHMLD--------------IECFTYLHRALESS--IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--R 357 (456)
T ss_dssp ECEEEEESGGGCB--------------HHHHHHHHHHTTST--TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--T
T ss_pred ceEEEEechhhcC--------------HHHHHHHHHHhhcc--CCCEEEEecCCccccccccccccccccCChhHHh--h
Confidence 4699999999883 15677788888743 334655565 33 28899999999 9
Q ss_pred cceEEecCCCCHHHHHHHHHhhcC------CCCCHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 82 LDRKIEFPLPDRRQKRLVFQMNLS------DEVDLEDYVSRP-DKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~~l~------~~~~~~~la~~t-~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
|.. +.+++|+.++..++++.... ++..+..++..+ .| +++..-.+++.|...|..++...|+.+|+.+++.
T Consensus 358 ~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~ 435 (456)
T 2c9o_A 358 VMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEISE 435 (456)
T ss_dssp EEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHH
Confidence 988 59999999999999985432 122345566666 44 8999999999998899888888999999999987
Q ss_pred hhc
Q 030960 155 TNV 157 (168)
Q Consensus 155 ~~~ 157 (168)
-+.
T Consensus 436 ~~~ 438 (456)
T 2c9o_A 436 LFY 438 (456)
T ss_dssp HSC
T ss_pred Hhc
Confidence 653
No 60
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.68 E-value=1.3e-08 Score=72.61 Aligned_cols=87 Identities=21% Similarity=0.275 Sum_probs=58.2
Q ss_pred HHHHHHHHH-HcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC-----CCCcc
Q 030960 2 VRDVFRLAK-ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPA 75 (168)
Q Consensus 2 l~~iF~~a~-~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~a 75 (168)
++.+|..+. ...|+||+|||+|.+...+....... ....+..++ + ..++.+|++||.+. .++++
T Consensus 103 ~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~---~~~~l~~~~---~----~~~~~~i~~~~~~~~~~~~~~~~~ 172 (195)
T 1jbk_A 103 LKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMD---AGNMLKPAL---A----RGELHCVGATTLDEYRQYIEKDAA 172 (195)
T ss_dssp HHHHHHHHHHSTTTEEEEEETGGGGTT------CCC---CHHHHHHHH---H----TTSCCEEEEECHHHHHHHTTTCHH
T ss_pred HHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHH---HHHHHHHhh---c----cCCeEEEEeCCHHHHHHHHhcCHH
Confidence 345566443 45589999999999976542211111 113333332 2 34677899998886 78999
Q ss_pred ccCCCCcceEEecCCCCHHHHHHHHH
Q 030960 76 LLRPGRLDRKIEFPLPDRRQKRLVFQ 101 (168)
Q Consensus 76 l~r~grf~~~i~~~~P~~~~R~~il~ 101 (168)
+.+ ||+ .+++++|+.++|.+|++
T Consensus 173 l~~--r~~-~i~~~~p~~~~~~~il~ 195 (195)
T 1jbk_A 173 LER--RFQ-KVFVAEPSVEDTIAILR 195 (195)
T ss_dssp HHT--TEE-EEECCCCCHHHHHTTCC
T ss_pred HHH--Hhc-eeecCCCCHHHHHHHhC
Confidence 999 999 69999999999998763
No 61
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.68 E-value=2.1e-08 Score=78.32 Aligned_cols=117 Identities=16% Similarity=0.140 Sum_probs=71.5
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
.+.||+|||+|.+.+ . ...+.|+..++. ...++.+|++||.+..+++++++ ||. .+.|++|+
T Consensus 105 ~~~vliiDEi~~l~~----------~---~~~~~L~~~le~--~~~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~ 166 (324)
T 3u61_B 105 RQKVIVIDEFDRSGL----------A---ESQRHLRSFMEA--YSSNCSIIITANNIDGIIKPLQS--RCR-VITFGQPT 166 (324)
T ss_dssp CEEEEEEESCCCGGG----------H---HHHHHHHHHHHH--HGGGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCC
T ss_pred CCeEEEEECCcccCc----------H---HHHHHHHHHHHh--CCCCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCC
Confidence 579999999999841 1 223344444442 23467889999999999999999 995 79999999
Q ss_pred HHHHHHHHHhhcC-------------CC-CCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 93 RRQKRLVFQMNLS-------------DE-VDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 93 ~~~R~~il~~~l~-------------~~-~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
.++|.++++..+. ++ ..+..++..+.| ..+++.+.++.++ ....|+.+++.+++.
T Consensus 167 ~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~~------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 167 DEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELDSYS------SKGVLDAGILSLVTN 235 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHHHHG------GGTCBCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHHHHh------ccCCCCHHHHHHHhC
Confidence 9998877653322 12 235567777655 3333444444443 223467776665543
No 62
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.66 E-value=2e-07 Score=73.67 Aligned_cols=129 Identities=17% Similarity=0.203 Sum_probs=92.8
Q ss_pred HHHHHHHHHH----cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcccc
Q 030960 2 VRDVFRLAKE----NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 2 l~~iF~~a~~----~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (168)
++.+++.+.. ..+.||+|||+|.+.. ...+.++..++. ...++++|++|+.+..+++.+.
T Consensus 104 ~~~l~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 104 TRDLLDNVQYAPARGRFKVYLIDEVHMLSR--------------HSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp HHHHHHHTTSCCSSSSSEEEEEECGGGSCH--------------HHHHHHHHHHHS--CCSSEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHhhccccCCeEEEEEECcchhcH--------------HHHHHHHHHHhc--CCCceEEEEEeCChHhCcHHHH
Confidence 3555665542 2378999999998731 234556666663 3457888888999999999999
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhcCC---CC---CHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNLSD---EV---DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 151 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l~~---~~---~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 151 (168)
+ |+ ..+.+++|+.++..++++..+.. .+ .+..++..+.| +++++.++++.+...+ ...|+.+++.+
T Consensus 168 s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~ 239 (373)
T 1jr3_A 168 S--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIASG----DGQVSTQAVSA 239 (373)
T ss_dssp T--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHHHHHHHHHHHHT----TTCBCHHHHHH
T ss_pred h--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhc----CCcccHHHHHH
Confidence 8 76 78999999999999999865531 22 25668888877 7888888888775432 34578777766
Q ss_pred HHH
Q 030960 152 GYR 154 (168)
Q Consensus 152 al~ 154 (168)
++.
T Consensus 240 ~~~ 242 (373)
T 1jr3_A 240 MLG 242 (373)
T ss_dssp HTT
T ss_pred HhC
Confidence 543
No 63
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.66 E-value=9.4e-08 Score=80.99 Aligned_cols=127 Identities=20% Similarity=0.166 Sum_probs=91.3
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC-----------CCCCCeEEEEecCCCC------------
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-----------DQTVNVKVIMATNRAD------------ 70 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~v~vi~ttn~~~------------ 70 (168)
.+|+||||+|.+-. ...+.++..|+.- ....++.||||||.+.
T Consensus 392 ~gil~IDEid~l~~--------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~n 457 (595)
T 3f9v_A 392 GGIAVIDEIDKMRD--------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDN 457 (595)
T ss_dssp SSEECCTTTTCCCS--------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTT
T ss_pred CCcEEeehhhhCCH--------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhc
Confidence 58999999998732 2234455555421 1124688999999887
Q ss_pred -CCCccccCCCCcce-EEecCCCCHHHHHHHHHhhcCC-------------------------------CCCHHHHHhC-
Q 030960 71 -TLDPALLRPGRLDR-KIEFPLPDRRQKRLVFQMNLSD-------------------------------EVDLEDYVSR- 116 (168)
Q Consensus 71 -~ld~al~r~grf~~-~i~~~~P~~~~R~~il~~~l~~-------------------------------~~~~~~la~~- 116 (168)
.+++++++ |||. .+..+.|+.+ ...|.++.+.. +...+.+...
T Consensus 458 i~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y 534 (595)
T 3f9v_A 458 INLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFF 534 (595)
T ss_dssp TCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHH
T ss_pred cCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 89999999 9985 5566788887 77777644331 0111222222
Q ss_pred -------------CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 117 -------------PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 117 -------------t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
+.+.|++.+.++++.|...|..++...++.+|+.+|+.-..
T Consensus 535 ~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 535 VEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMR 588 (595)
T ss_dssp TTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHH
Confidence 35789999999999999999989999999999999997654
No 64
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.65 E-value=3.5e-07 Score=72.02 Aligned_cols=96 Identities=13% Similarity=0.061 Sum_probs=80.6
Q ss_pred CeEEEEecCCCCCCCccccCCCCcceEEecCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHH
Q 030960 59 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEA 132 (168)
Q Consensus 59 ~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a 132 (168)
.+.++++|+.+..+++.+++ ||...+.+++|+.+++.++++.... ++..+..++..+.| +++++.++++.+
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~ 226 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRV 226 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 46778899999999999999 9999999999999999999985432 12235678888877 678999999999
Q ss_pred HHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 133 GMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 133 ~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
...|...+...|+.+++.+++....
T Consensus 227 ~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 227 RDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 8888877778899999999998754
No 65
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.63 E-value=7.2e-08 Score=84.74 Aligned_cols=125 Identities=16% Similarity=0.174 Sum_probs=78.0
Q ss_pred HHHHHHHHHHc-CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC----CCCccc
Q 030960 2 VRDVFRLAKEN-APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD----TLDPAL 76 (168)
Q Consensus 2 l~~iF~~a~~~-~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~----~ld~al 76 (168)
++.+|..++.. .|+||||||+|.+.+.+..... . ...+.+...++ ..++.+|++||.++ .+|+++
T Consensus 251 l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~---~---~~~~~L~~~l~----~~~i~~I~at~~~~~~~~~~d~aL 320 (854)
T 1qvr_A 251 LKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA---V---DAGNMLKPALA----RGELRLIGATTLDEYREIEKDPAL 320 (854)
T ss_dssp HHHHHHHHHTTCSSEEEEECCC-------------------------HHHHH----TTCCCEEEEECHHHHHHHTTCTTT
T ss_pred HHHHHHHHHhcCCCeEEEEecHHHHhccCCccch---H---HHHHHHHHHHh----CCCeEEEEecCchHHhhhccCHHH
Confidence 56788888765 6999999999999865532211 1 22222333332 34677899998775 489999
Q ss_pred cCCCCcceEEecCCCCHHHHHHHHHhhcC----------CCCCHHHHHh-----CCCCCCHHHHHHHHHHHHHHHHHh
Q 030960 77 LRPGRLDRKIEFPLPDRRQKRLVFQMNLS----------DEVDLEDYVS-----RPDKISAAEIAAICQEAGMHAVRK 139 (168)
Q Consensus 77 ~r~grf~~~i~~~~P~~~~R~~il~~~l~----------~~~~~~~la~-----~t~g~s~~di~~l~~~a~~~a~~~ 139 (168)
.+ ||+. +.+++|+.+++.+|++..+. .+..+..++. .+++|.+.....++.+|+..+...
T Consensus 321 ~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 321 ER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp CS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHT
T ss_pred Hh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhh
Confidence 99 9996 99999999999999985443 1112333444 356788888889888887665543
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.61 E-value=4.4e-07 Score=78.75 Aligned_cols=111 Identities=23% Similarity=0.271 Sum_probs=78.2
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC-----CCCccc
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPAL 76 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~al 76 (168)
++.+|..+....|+||||| + . . ...+.++..+ ....+.+|++||..+ .+|+++
T Consensus 256 l~~~~~~~~~~~~~iLfiD-----~-~----~--------~~~~~L~~~l----~~~~v~~I~at~~~~~~~~~~~d~al 313 (758)
T 3pxi_A 256 LKKVMDEIRQAGNIILFID-----A-A----I--------DASNILKPSL----ARGELQCIGATTLDEYRKYIEKDAAL 313 (758)
T ss_dssp HHHHHHHHHTCCCCEEEEC-----C---------------------CCCT----TSSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred HHHHHHHHHhcCCEEEEEc-----C-c----h--------hHHHHHHHHH----hcCCEEEEeCCChHHHHHHhhccHHH
Confidence 5789999999999999999 1 0 0 1122233223 355799999999988 799999
Q ss_pred cCCCCcceEEecCCCCHHHHHHHHHhhcCC-----CCC-----HHHHHh-----CCCCCCHHHHHHHHHHHHHHHH
Q 030960 77 LRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EVD-----LEDYVS-----RPDKISAAEIAAICQEAGMHAV 137 (168)
Q Consensus 77 ~r~grf~~~i~~~~P~~~~R~~il~~~l~~-----~~~-----~~~la~-----~t~g~s~~di~~l~~~a~~~a~ 137 (168)
.| || ..+.|+.|+.+++.+||+..... .+. +..++. .++++.+.+...++..|+..+.
T Consensus 314 ~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~ 386 (758)
T 3pxi_A 314 ER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVR 386 (758)
T ss_dssp HH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHH
T ss_pred Hh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHH
Confidence 99 99 56999999999999999965542 122 233333 2467788888888887765443
No 67
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.60 E-value=1.9e-07 Score=77.61 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=85.6
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccC-------C-CCCCCeEEEEecCCCCC---CCccccCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-------F-DQTVNVKVIMATNRADT---LDPALLRPGR 81 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-------~-~~~~~v~vi~ttn~~~~---ld~al~r~gr 81 (168)
.++||||||++.+- . .+.+.++..|+. . ...+..++|++||.+.. ..+++++ |
T Consensus 109 ~~~IL~IDEI~r~~-----------~---~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--R 172 (500)
T 3nbx_X 109 EAEIVFLDEIWKAG-----------P---AILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--R 172 (500)
T ss_dssp GCSEEEEESGGGCC-----------H---HHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--T
T ss_pred cceeeeHHhHhhhc-----------H---HHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--H
Confidence 47899999997542 1 344556665542 1 11122356777775322 3348999 9
Q ss_pred cceEEecCCCCH-HHHHHHHHhhcCC------------------------CC-----CHHHHHhC---------CCCCCH
Q 030960 82 LDRKIEFPLPDR-RQKRLVFQMNLSD------------------------EV-----DLEDYVSR---------PDKISA 122 (168)
Q Consensus 82 f~~~i~~~~P~~-~~R~~il~~~l~~------------------------~~-----~~~~la~~---------t~g~s~ 122 (168)
|...+.+++|+. ++|.+|++..... .+ .++.++.. ..|.|+
T Consensus 173 F~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~ 252 (500)
T 3nbx_X 173 MLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSD 252 (500)
T ss_dssp CCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCH
T ss_pred HHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccch
Confidence 999999999987 7889999854421 01 12223222 358999
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 123 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 123 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
+.+..+++.|...|...++..++.+|+. ++..
T Consensus 253 R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~ 284 (500)
T 3nbx_X 253 RRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKD 284 (500)
T ss_dssp HHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGG
T ss_pred hHHHHHHHHHHHHHhhcCCccccchHHH-HHHh
Confidence 9999999999999999999899999988 4443
No 68
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.58 E-value=2.1e-07 Score=72.97 Aligned_cols=122 Identities=16% Similarity=0.100 Sum_probs=86.9
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
.+.||+|||+|.+... ..+.++..++.. ..++.+|++||++..+++++++ |+. .+.+++|+
T Consensus 133 ~~~vliiDE~~~l~~~--------------~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~ 193 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD--------------AQSALRRTMETY--SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALD 193 (353)
T ss_dssp SCEEEEETTGGGSCHH--------------HHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCC
T ss_pred CceEEEEECCCccCHH--------------HHHHHHHHHHhc--CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCC
Confidence 3579999999988421 223455555532 2356677788999999999999 886 89999999
Q ss_pred HHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCC-ccCHHHHHHHHH
Q 030960 93 RRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRY-VILPKDFEKGYR 154 (168)
Q Consensus 93 ~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~-~i~~~d~~~al~ 154 (168)
.++...+++..+.. +..+..++..+.| .++.+.++++.+...+-+.+.. .|+.+++.+++.
T Consensus 194 ~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 194 ASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 99999999865431 2235677888876 4677777777776655444322 699999888766
No 69
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.57 E-value=1.6e-07 Score=77.29 Aligned_cols=129 Identities=22% Similarity=0.232 Sum_probs=84.6
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC-----CCCccc
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPAL 76 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~al 76 (168)
++.+|..++...|+||||| + .. ...+.|+..+ ..+.+.+|++||.++ .+|+++
T Consensus 256 ~~~~~~~~~~~~~~iLfiD-----~-~~------------~a~~~L~~~L----~~g~v~vI~at~~~e~~~~~~~~~al 313 (468)
T 3pxg_A 256 LKKVMDEIRQAGNIILFID-----A-AI------------DASNILKPSL----ARGELQCIGATTLDEYRKYIEKDAAL 313 (468)
T ss_dssp HHHHHHHHHTCCCCEEEEC-----C---------------------CCCT----TSSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred HHHHHHHHHhcCCeEEEEe-----C-ch------------hHHHHHHHhh----cCCCEEEEecCCHHHHHHHhhcCHHH
Confidence 5788999998899999999 1 00 1122233223 355799999999987 799999
Q ss_pred cCCCCcceEEecCCCCHHHHHHHHHhhcCC-----CC-----CHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHhC-
Q 030960 77 LRPGRLDRKIEFPLPDRRQKRLVFQMNLSD-----EV-----DLEDYVSRP-----DKISAAEIAAICQEAGMHAVRKN- 140 (168)
Q Consensus 77 ~r~grf~~~i~~~~P~~~~R~~il~~~l~~-----~~-----~~~~la~~t-----~g~s~~di~~l~~~a~~~a~~~~- 140 (168)
.+ ||. .+.|++|+.+++.+|++.+... .+ .+..++..+ ..+.+.....++..|...+..+.
T Consensus 314 ~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~ 390 (468)
T 3pxg_A 314 ER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSF 390 (468)
T ss_dssp HH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTT
T ss_pred HH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccC
Confidence 99 998 4999999999999999966542 11 233444433 34556688888888765554433
Q ss_pred CCccCHHHHHHHHHh
Q 030960 141 RYVILPKDFEKGYRT 155 (168)
Q Consensus 141 ~~~i~~~d~~~al~~ 155 (168)
..+-.-.++++.++.
T Consensus 391 ~~p~~i~~l~~~i~~ 405 (468)
T 3pxg_A 391 TTPPNLKELEQKLDE 405 (468)
T ss_dssp SCCSSTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHH
Confidence 223334444444443
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.54 E-value=1.5e-07 Score=81.66 Aligned_cols=117 Identities=12% Similarity=0.198 Sum_probs=81.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC---------CCCCeEEEEecCCCCC-----
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD---------QTVNVKVIMATNRADT----- 71 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vi~ttn~~~~----- 71 (168)
+...+...++||||||+|.+- . .+.+.|+..++.-. ...++++|+|||.+..
T Consensus 572 ~~~~~~~~~~vl~lDEi~~~~-----------~---~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~ 637 (758)
T 3pxi_A 572 TEKVRRKPYSVVLLDAIEKAH-----------P---DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKV 637 (758)
T ss_dssp HHHHHHCSSSEEEEECGGGSC-----------H---HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHH
T ss_pred hHHHHhCCCeEEEEeCccccC-----------H---HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHH
Confidence 445566678999999999762 1 44555665555311 2346899999997665
Q ss_pred -------CCccccCCCCcceEEecCCCCHHHHHHHHHhhcCC---------------CCCHHHHHh--CCCCCCHHHHHH
Q 030960 72 -------LDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD---------------EVDLEDYVS--RPDKISAAEIAA 127 (168)
Q Consensus 72 -------ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~~---------------~~~~~~la~--~t~g~s~~di~~ 127 (168)
++|+++. ||+..+.|++|+.+++..|++.++.. +..++.+++ ....+..++|.+
T Consensus 638 ~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~ 715 (758)
T 3pxi_A 638 MGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRR 715 (758)
T ss_dssp HHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHH
T ss_pred HHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHH
Confidence 7888888 99999999999999999999865531 113445655 345677889999
Q ss_pred HHHHHHHHHHH
Q 030960 128 ICQEAGMHAVR 138 (168)
Q Consensus 128 l~~~a~~~a~~ 138 (168)
+++++...++.
T Consensus 716 ~i~~~v~~~l~ 726 (758)
T 3pxi_A 716 AIQKHVEDRLS 726 (758)
T ss_dssp HHHHHTHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99887665554
No 71
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.51 E-value=4.3e-07 Score=70.08 Aligned_cols=118 Identities=16% Similarity=0.118 Sum_probs=82.5
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCC
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P 91 (168)
..+.||+|||+|.+.. ...+.++..++. ...++.+|++||.+..+++++.+ |+. .+.+++|
T Consensus 101 ~~~~vliiDe~~~l~~--------------~~~~~L~~~le~--~~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~ 161 (319)
T 2chq_A 101 APFKIIFLDEADALTA--------------DAQAALRRTMEM--YSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPV 161 (319)
T ss_dssp CCCEEEEEETGGGSCH--------------HHHHTTGGGTSS--SSSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCC
T ss_pred CCceEEEEeCCCcCCH--------------HHHHHHHHHHHh--cCCCCeEEEEeCChhhcchHHHh--hCe-EEEecCC
Confidence 3489999999998842 223445555653 34578889999999999999999 886 8999999
Q ss_pred CHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 92 DRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 92 ~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
+.+++..+++..+.. +..+..++..+.| ..+.+.++++.++.. ...++.+++.+.+.
T Consensus 162 ~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 162 PKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAI-----GEVVDADTIYQITA 224 (319)
T ss_dssp CHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHHS-----SSCBCHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc-----CCCCCHHHHHHHHC
Confidence 999999999865542 2235567776655 555555666554431 23577777766544
No 72
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=6.9e-07 Score=69.05 Aligned_cols=118 Identities=11% Similarity=0.092 Sum_probs=81.5
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
.+.||+|||+|.+.. ...+.++..++. ...++.+|++||.+..+++++.+ |+. .+.+++|+
T Consensus 107 ~~~viiiDe~~~l~~--------------~~~~~L~~~le~--~~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~ 167 (323)
T 1sxj_B 107 KHKIVILDEADSMTA--------------GAQQALRRTMEL--YSNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLS 167 (323)
T ss_dssp CCEEEEEESGGGSCH--------------HHHHTTHHHHHH--TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCC
T ss_pred CceEEEEECcccCCH--------------HHHHHHHHHHhc--cCCCceEEEEeCChhhchhHHHh--hce-EEeecCCC
Confidence 389999999998842 122334444442 33467788888999999999998 776 89999999
Q ss_pred HHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 93 RRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 93 ~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
.++..++++..+. ++..+..+++.+.| .++.+.++++.+... . ..++.+++.+++..
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~~~---~--~~i~~~~v~~~~~~ 230 (323)
T 1sxj_B 168 DEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTVAG---H--GLVNADNVFKIVDS 230 (323)
T ss_dssp HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHH---H--SSBCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc---C--CCcCHHHHHHHHCC
Confidence 9999999986543 12235567777755 555555655555422 1 35888888777653
No 73
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.47 E-value=3.6e-07 Score=73.08 Aligned_cols=135 Identities=14% Similarity=0.138 Sum_probs=93.5
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC-CC--CCeEEEEecCCCC---CCC---ccccCCCCc
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-QT--VNVKVIMATNRAD---TLD---PALLRPGRL 82 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~--~~v~vi~ttn~~~---~ld---~al~r~grf 82 (168)
..|.||+|||+|.+...+. .+. ..+..++..+..+. .. .++.+|++|+.++ .++ +.+.+ +|
T Consensus 137 ~~~~llvlDe~~~l~~~~~-----~~~---~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~ 206 (412)
T 1w5s_A 137 NHYLLVILDEFQSMLSSPR-----IAA---EDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QI 206 (412)
T ss_dssp TCEEEEEEESTHHHHSCTT-----SCH---HHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TC
T ss_pred CCeEEEEEeCHHHHhhccC-----cch---HHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hc
Confidence 4599999999999864310 111 34444444444332 12 5788888888765 344 55666 66
Q ss_pred ceEEecCCCCHHHHHHHHHhhcC--------CCCCHHHHHhCCC------CCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 030960 83 DRKIEFPLPDRRQKRLVFQMNLS--------DEVDLEDYVSRPD------KISAAEIAAICQEAGMHAVRKNRYVILPKD 148 (168)
Q Consensus 83 ~~~i~~~~P~~~~R~~il~~~l~--------~~~~~~~la~~t~------g~s~~di~~l~~~a~~~a~~~~~~~i~~~d 148 (168)
...+.+++++.++..++++..+. ++..+..++..+. | .++.+..++..|...+..++...++.++
T Consensus 207 ~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~ 285 (412)
T 1w5s_A 207 GFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDL 285 (412)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHH
T ss_pred CCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 66699999999999999975432 1123456777777 5 5778888999888888877777899999
Q ss_pred HHHHHHhhc
Q 030960 149 FEKGYRTNV 157 (168)
Q Consensus 149 ~~~al~~~~ 157 (168)
+..++....
T Consensus 286 v~~~~~~~~ 294 (412)
T 1w5s_A 286 VRKAVSENE 294 (412)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHh
Confidence 998887653
No 74
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.47 E-value=3e-07 Score=79.66 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=84.4
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC---------CCCCeEEEEecCCCC-----
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD---------QTVNVKVIMATNRAD----- 70 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vi~ttn~~~----- 70 (168)
+....+...++||||||+|.+- . .+.+.|+..++.-. ...++++|+|||.+.
T Consensus 549 l~~~~~~~~~~vl~lDEi~~~~-----------~---~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~ 614 (758)
T 1r6b_X 549 LTDAVIKHPHAVLLLDEIEKAH-----------P---DVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETER 614 (758)
T ss_dssp HHHHHHHCSSEEEEEETGGGSC-----------H---HHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC----
T ss_pred HHHHHHhCCCcEEEEeCccccC-----------H---HHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhh
Confidence 3455556668999999999762 1 45666666665311 024688999999854
Q ss_pred --------------------CCCccccCCCCcceEEecCCCCHHHHHHHHHhhcCC---------------CCCHHHHHh
Q 030960 71 --------------------TLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD---------------EVDLEDYVS 115 (168)
Q Consensus 71 --------------------~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~~---------------~~~~~~la~ 115 (168)
.++|+++. ||+..+.|++|+.+++..|++.++.. +-.+..+++
T Consensus 615 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~ 692 (758)
T 1r6b_X 615 KSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAE 692 (758)
T ss_dssp -------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHH
T ss_pred cccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHH
Confidence 67888888 99999999999999999999866541 112444554
Q ss_pred --CCCCCCHHHHHHHHHHHHHHHHH
Q 030960 116 --RPDKISAAEIAAICQEAGMHAVR 138 (168)
Q Consensus 116 --~t~g~s~~di~~l~~~a~~~a~~ 138 (168)
...++..++|.++++.+...++.
T Consensus 693 ~~~~~~~g~R~l~~~i~~~~~~~l~ 717 (758)
T 1r6b_X 693 KGYDRAMGARPMARVIQDNLKKPLA 717 (758)
T ss_dssp HHCBTTTBTTTHHHHHHHHHTHHHH
T ss_pred hCCCcCCCchHHHHHHHHHHHHHHH
Confidence 34567789999999888765443
No 75
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.46 E-value=2.8e-07 Score=73.54 Aligned_cols=143 Identities=19% Similarity=0.150 Sum_probs=86.4
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC-------------------CCCCeEEEEecCC----
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-------------------QTVNVKVIMATNR---- 68 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------------------~~~~v~vi~ttn~---- 68 (168)
..++||||||+|.+...+.......+.....+.+.|+..|++.. ...++++|++||.
T Consensus 136 ~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~ 215 (376)
T 1um8_A 136 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLA 215 (376)
T ss_dssp HTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHH
T ss_pred cCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHH
Confidence 36899999999999876533322222222246677777776421 1245677887762
Q ss_pred -------------------------------------CCCCCccccCCCCcceEEecCCCCHHHHHHHHHhhcC------
Q 030960 69 -------------------------------------ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS------ 105 (168)
Q Consensus 69 -------------------------------------~~~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~------ 105 (168)
...+.+++.. ||+..+.|++++.++...++...+.
T Consensus 216 ~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~ 293 (376)
T 1um8_A 216 EIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQY 293 (376)
T ss_dssp HHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHH
T ss_pred HHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHH
Confidence 0124566666 8989999999999999999963110
Q ss_pred -------------CCCCHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHhCC------CccCHHHHHHHHHhh
Q 030960 106 -------------DEVDLEDYVSRP--DKISAAEIAAICQEAGMHAVRKNR------YVILPKDFEKGYRTN 156 (168)
Q Consensus 106 -------------~~~~~~~la~~t--~g~s~~di~~l~~~a~~~a~~~~~------~~i~~~d~~~al~~~ 156 (168)
++-.+..++... .+...+.|.++++.+...++.+.. ..|+.+++.++.+..
T Consensus 294 ~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~ 365 (376)
T 1um8_A 294 QQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPL 365 (376)
T ss_dssp HHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSCCE
T ss_pred HHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCCCce
Confidence 111234455543 246789999999998877666432 258999887765543
No 76
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.39 E-value=7.8e-07 Score=69.84 Aligned_cols=86 Identities=10% Similarity=0.172 Sum_probs=64.9
Q ss_pred HHHHHHHH--HHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC----CCcc
Q 030960 2 VRDVFRLA--KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT----LDPA 75 (168)
Q Consensus 2 l~~iF~~a--~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~----ld~a 75 (168)
++.+|..+ ....|+||+|||+|.+. . +.++..++.+.. ....++.+|+++|..+. ++++
T Consensus 119 L~~~f~~~~~~~~~~~ii~lDE~d~l~-~------------q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~ 183 (318)
T 3te6_A 119 LNFYITNVPKAKKRKTLILIQNPENLL-S------------EKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIM 183 (318)
T ss_dssp HHHHHHHSCGGGSCEEEEEEECCSSSC-C------------THHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTC
T ss_pred HHHHHHHhhhccCCceEEEEecHHHhh-c------------chHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchh
Confidence 46677765 35568999999999997 1 155666666543 34567999999998864 5566
Q ss_pred ccCCCCcc-eEEecCCCCHHHHHHHHHhhc
Q 030960 76 LLRPGRLD-RKIEFPLPDRRQKRLVFQMNL 104 (168)
Q Consensus 76 l~r~grf~-~~i~~~~P~~~~R~~il~~~l 104 (168)
+.+ ||+ ..|.|++++.++-.+|++.-+
T Consensus 184 v~S--R~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 184 PSL--KAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHH--HTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhc--cCCceEEEeCCCCHHHHHHHHHHHH
Confidence 677 887 689999999999999998544
No 77
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=1e-06 Score=68.16 Aligned_cols=117 Identities=18% Similarity=0.153 Sum_probs=79.5
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCC
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P 91 (168)
..+.||+|||+|.+.. ...+.++..++. ...++.+|++||.++.+++++.+ |+. .+.+++|
T Consensus 109 ~~~~vliiDe~~~l~~--------------~~~~~L~~~le~--~~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l 169 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQ--------------DAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPL 169 (327)
T ss_dssp CSCEEEEEETGGGSCH--------------HHHHHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCC
T ss_pred CCCeEEEEeCCCcCCH--------------HHHHHHHHHHHh--cCCCCeEEEEeCCccccCHHHHh--hCc-EEEecCC
Confidence 3489999999998742 223445555543 24467788899999999999998 887 7899999
Q ss_pred CHHHHHHHHHhhcCC------CCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 030960 92 DRRQKRLVFQMNLSD------EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 153 (168)
Q Consensus 92 ~~~~R~~il~~~l~~------~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 153 (168)
+.++...+++..+.. +..+..++..+.| +++.+.++++.+... ...++.+++...+
T Consensus 170 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 170 RDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAAL-----DKKITDENVFMVA 231 (327)
T ss_dssp CHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHTT-----CSEECHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 999999999865432 2235567777655 666666666655421 2245555555443
No 78
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.28 E-value=4e-07 Score=64.59 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=53.2
Q ss_pred HHHHHHHHHHc-CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC-----CCCcc
Q 030960 2 VRDVFRLAKEN-APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPA 75 (168)
Q Consensus 2 l~~iF~~a~~~-~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~a 75 (168)
++.+|..+... .|++|+|||+|.+.+.+...... . .+.+.+...++ ..++.+|++||.+. .++++
T Consensus 103 ~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~--~---~~~~~l~~~~~----~~~~~ii~~~~~~~~~~~~~~~~~ 173 (187)
T 2p65_A 103 LKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA--L---DAGNILKPMLA----RGELRCIGATTVSEYRQFIEKDKA 173 (187)
T ss_dssp HHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS--C---CTHHHHHHHHH----TTCSCEEEEECHHHHHHHTTTCHH
T ss_pred HHHHHHHHHhcCCceEEEEeCHHHhcccccccccc--h---HHHHHHHHHHh----cCCeeEEEecCHHHHHHHHhccHH
Confidence 34566666655 68999999999998654311111 1 12222333332 34678999999875 68999
Q ss_pred ccCCCCcceEEecCCCC
Q 030960 76 LLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 76 l~r~grf~~~i~~~~P~ 92 (168)
+.+ ||+. +++++|+
T Consensus 174 l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 174 LER--RFQQ-ILVEQPS 187 (187)
T ss_dssp HHH--HEEE-EECCSCC
T ss_pred HHH--hcCc-ccCCCCC
Confidence 999 9995 9999986
No 79
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.21 E-value=5.2e-06 Score=65.29 Aligned_cols=109 Identities=15% Similarity=0.181 Sum_probs=77.1
Q ss_pred HHHHHHHHHH----cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcccc
Q 030960 2 VRDVFRLAKE----NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 2 l~~iF~~a~~----~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (168)
++++.+.+.. ..+.|++|||+|.+.. ...+.|+..++. ...++++|.+||+++.++++++
T Consensus 93 ir~l~~~~~~~~~~~~~kvviIdead~l~~--------------~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~ 156 (334)
T 1a5t_A 93 VREVTEKLNEHARLGGAKVVWVTDAALLTD--------------AAANALLKTLEE--PPAETWFFLATREPERLLATLR 156 (334)
T ss_dssp HHHHHHHTTSCCTTSSCEEEEESCGGGBCH--------------HHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHhhccccCCcEEEEECchhhcCH--------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHh
Confidence 4556666543 2378999999998842 235667777873 4557888889999999999999
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhcC-CCCCHHHHHhCCCCCCHHHHHHHHH
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNLS-DEVDLEDYVSRPDKISAAEIAAICQ 130 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l~-~~~~~~~la~~t~g~s~~di~~l~~ 130 (168)
+ |+. .+.|++|+.++..++++.... ++..+..++..+.| +++...++++
T Consensus 157 S--Rc~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~~s~G-~~r~a~~~l~ 206 (334)
T 1a5t_A 157 S--RCR-LHYLAPPPEQYAVTWLSREVTMSQDALLAALRLSAG-SPGAALALFQ 206 (334)
T ss_dssp T--TSE-EEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHTTT-CHHHHHHTTS
T ss_pred h--cce-eeeCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHcCC-CHHHHHHHhc
Confidence 9 874 799999999999999987652 22234556666655 4444444433
No 80
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.21 E-value=9.6e-06 Score=67.47 Aligned_cols=121 Identities=13% Similarity=0.150 Sum_probs=73.8
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCC
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P 91 (168)
..++||+|||+|.+..... ..+..++..++. ....+++++++.....+++ +. |+...+.|++|
T Consensus 147 ~~~~vliIDEid~l~~~~~-----------~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~ 209 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDR-----------GGVGQLAQFCRK--TSTPLILICNERNLPKMRP-FD---RVCLDIQFRRP 209 (516)
T ss_dssp TTSEEEEECSGGGCCTTST-----------THHHHHHHHHHH--CSSCEEEEESCTTSSTTGG-GT---TTSEEEECCCC
T ss_pred CCCeEEEEECCCccchhhH-----------HHHHHHHHHHHh--cCCCEEEEEcCCCCccchh-hH---hceEEEEeCCC
Confidence 4689999999999974320 123334444432 2234555555444445543 33 56679999999
Q ss_pred CHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 92 DRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 92 ~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
+.+++.++++.... ++..+..+++.+.| |+..+++.....+. ....|+.+++.+++..
T Consensus 210 ~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G----diR~~i~~L~~~~~--~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 210 DANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG----DIRQVINLLSTIST--TTKTINHENINEISKA 273 (516)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT----CHHHHHHHHTHHHH--HSSCCCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHHHHHHHHHHHHh--cCCCCchHHHHHHHHh
Confidence 99999999874332 23347778887754 45444444333232 3456888888877764
No 81
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=4.7e-06 Score=65.45 Aligned_cols=103 Identities=11% Similarity=0.207 Sum_probs=74.1
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
.|.||+|||+|.+-. ...+.++..++.. ..++.+|.+|+.++.+++.+++ |+ ..+.|++|+
T Consensus 134 ~~~vlilDE~~~L~~--------------~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~ 194 (354)
T 1sxj_E 134 RYKCVIINEANSLTK--------------DAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPS 194 (354)
T ss_dssp CCEEEEEECTTSSCH--------------HHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCC
T ss_pred CCeEEEEeCccccCH--------------HHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcC
Confidence 578999999998521 2233444445432 2357788889999999999999 88 889999999
Q ss_pred HHHHHHHHHhhcC------C-CCCHHHHHhCCCCCCHHHHHHHHHHHHHH
Q 030960 93 RRQKRLVFQMNLS------D-EVDLEDYVSRPDKISAAEIAAICQEAGMH 135 (168)
Q Consensus 93 ~~~R~~il~~~l~------~-~~~~~~la~~t~g~s~~di~~l~~~a~~~ 135 (168)
.++..++++.... + +..+..++..+.| +.+++.++++.+...
T Consensus 195 ~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 195 DSEISTILSDVVTNERIQLETKDILKRIAQASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp HHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 9999999985543 1 3346677777755 667777777766543
No 82
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.05 E-value=5.1e-06 Score=73.04 Aligned_cols=118 Identities=19% Similarity=0.271 Sum_probs=82.8
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC---------CCCCeEEEEecCCC-------
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD---------QTVNVKVIMATNRA------- 69 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vi~ttn~~------- 69 (168)
....+...++||||||+|.+- ..+.+.|+..++.-. ...++++|+|||..
T Consensus 653 ~~~~~~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~ 718 (854)
T 1qvr_A 653 TEAVRRRPYSVILFDEIEKAH--------------PDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEG 718 (854)
T ss_dssp HHHHHHCSSEEEEESSGGGSC--------------HHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHH
T ss_pred HHHHHhCCCeEEEEecccccC--------------HHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhh
Confidence 344455567999999999762 156677777776421 12368899999972
Q ss_pred -------------------CCCCccccCCCCcceEEecCCCCHHHHHHHHHhhcCC---------------CCCHHHHHh
Q 030960 70 -------------------DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSD---------------EVDLEDYVS 115 (168)
Q Consensus 70 -------------------~~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~~---------------~~~~~~la~ 115 (168)
..+.|+++. ||+..+.+.+|+.++...|++.++.. +-.++.+++
T Consensus 719 ~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~ 796 (854)
T 1qvr_A 719 LQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAE 796 (854)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHH
Confidence 245666776 99999999999999999999866541 112345665
Q ss_pred CCC--CCCHHHHHHHHHHHHHHHHHh
Q 030960 116 RPD--KISAAEIAAICQEAGMHAVRK 139 (168)
Q Consensus 116 ~t~--g~s~~di~~l~~~a~~~a~~~ 139 (168)
..- .+..++|.++++.+...++.+
T Consensus 797 ~~~~~~gn~R~L~~~i~~~~~~~~~~ 822 (854)
T 1qvr_A 797 RGYDPVFGARPLRRVIQRELETPLAQ 822 (854)
T ss_dssp HHCBTTTBTSTHHHHHHHHTHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 433 678899999999887666543
No 83
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.05 E-value=5.1e-05 Score=62.05 Aligned_cols=139 Identities=19% Similarity=0.229 Sum_probs=90.4
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC--------CCCCeEEEEec----CCCCCCCccccCCCC
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD--------QTVNVKVIMAT----NRADTLDPALLRPGR 81 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~v~vi~tt----n~~~~ld~al~r~gr 81 (168)
..|+++||+|.++...++ ...+...+.+...||..+++-. ..++|++|+|. ++|.++-|.++. |
T Consensus 251 ~~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R 326 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--R 326 (444)
T ss_dssp HCEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--T
T ss_pred CCeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc--c
Confidence 368999999999865432 2333333457778888888631 34578888886 356666678887 9
Q ss_pred cceEEecCCCCHHHHHHHHHh---hc----------C------CCCCHHHHHh-------CCCCCCHHHHHHHHHHHHHH
Q 030960 82 LDRKIEFPLPDRRQKRLVFQM---NL----------S------DEVDLEDYVS-------RPDKISAAEIAAICQEAGMH 135 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~---~l----------~------~~~~~~~la~-------~t~g~s~~di~~l~~~a~~~ 135 (168)
|...+.++..+.++..+|+.. ++ . .+-.+..+++ .|.+.-.+-|.+++......
T Consensus 327 ~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~ 406 (444)
T 1g41_A 327 LPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDK 406 (444)
T ss_dssp CCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHH
T ss_pred cceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHH
Confidence 999999999999999999941 11 1 1112344544 45566666666655555443
Q ss_pred HHHhC------CCccCHHHHHHHHHhh
Q 030960 136 AVRKN------RYVILPKDFEKGYRTN 156 (168)
Q Consensus 136 a~~~~------~~~i~~~d~~~al~~~ 156 (168)
...+. ...|+.+.+...+...
T Consensus 407 ~~~~~~~~~~~~~~i~~~~v~~~l~~~ 433 (444)
T 1g41_A 407 ISFSASDMNGQTVNIDAAYVADALGEV 433 (444)
T ss_dssp HHHHGGGCTTCEEEECHHHHHHHHTTT
T ss_pred HHhhccccCCCeEEEeHHHHHHhcCcc
Confidence 33321 2358888888777543
No 84
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.93 E-value=1.5e-05 Score=67.56 Aligned_cols=95 Identities=20% Similarity=0.317 Sum_probs=66.9
Q ss_pred CeEEEEecCCC--CCCCccccCCCCcc---eEEecCC--C-CHHHHHHHHHhhc---C-----CCCC---HHHHHhC---
Q 030960 59 NVKVIMATNRA--DTLDPALLRPGRLD---RKIEFPL--P-DRRQKRLVFQMNL---S-----DEVD---LEDYVSR--- 116 (168)
Q Consensus 59 ~v~vi~ttn~~--~~ld~al~r~grf~---~~i~~~~--P-~~~~R~~il~~~l---~-----~~~~---~~~la~~--- 116 (168)
.+.||++||.. ..+++++++ ||+ ..+.++. + +.+....+++..- . ..++ +..+.+.
T Consensus 252 ~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r 329 (604)
T 3k1j_A 252 DFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQK 329 (604)
T ss_dssp CCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHH
T ss_pred eEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhh
Confidence 57899999986 689999999 997 5666543 2 3444555553211 1 1222 2333332
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 117 PDK------ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 117 t~g------~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
..| .+.+++.++++.|...|..++...|+.+|+.+|+..
T Consensus 330 ~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 330 RAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp TTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 255 379999999999998888888889999999999965
No 85
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.85 E-value=8.6e-05 Score=71.88 Aligned_cols=82 Identities=15% Similarity=0.323 Sum_probs=59.1
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC--------CCCCeEEEEecCCC-----CCCCccccCCC
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD--------QTVNVKVIMATNRA-----DTLDPALLRPG 80 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~v~vi~ttn~~-----~~ld~al~r~g 80 (168)
++||||||+|.....+.+ ......++.+++.. .++. ...++.+|||||.| ..|+++++|
T Consensus 1337 ~~VlFiDEinmp~~d~yg-----~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR-- 1408 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYG-----SQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR-- 1408 (2695)
T ss_dssp CEEEEEETTTCSCCCSSS-----CCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--
T ss_pred eEEEEecccccccccccC-----chhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--
Confidence 589999999974433311 12234566666542 1221 11358999999999 489999999
Q ss_pred CcceEEecCCCCHHHHHHHHHhhc
Q 030960 81 RLDRKIEFPLPDRRQKRLVFQMNL 104 (168)
Q Consensus 81 rf~~~i~~~~P~~~~R~~il~~~l 104 (168)
|| ..++++.|+.+++..|+...+
T Consensus 1409 rf-~vi~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1409 HA-AILYLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp TE-EEEECCCCTTTHHHHHHHHHH
T ss_pred ee-eEEEeCCCCHHHHHHHHHHHH
Confidence 99 889999999999999998554
No 86
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.74 E-value=1.7e-05 Score=62.27 Aligned_cols=122 Identities=16% Similarity=0.158 Sum_probs=73.2
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
.+.|++|||+|.+.. ...+.++..++. ....+.+|++||.+..+.+++++ |+. .+.+++++
T Consensus 110 ~~~viiiDe~~~l~~--------------~~~~~L~~~le~--~~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~ 170 (340)
T 1sxj_C 110 GFKLIILDEADAMTN--------------AAQNALRRVIER--YTKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLP 170 (340)
T ss_dssp SCEEEEETTGGGSCH--------------HHHHHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCC
T ss_pred CceEEEEeCCCCCCH--------------HHHHHHHHHHhc--CCCCeEEEEEecCccccchhHHh--hce-eEeccCCC
Confidence 378999999998742 123345555553 23456677888999999999999 886 78899999
Q ss_pred HHHHHHHHHhhcC-CCC-----CHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 93 RRQKRLVFQMNLS-DEV-----DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 93 ~~~R~~il~~~l~-~~~-----~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
.++..+.+...+. ..+ .+..++..+.| ..+.+.++++.+...+...+...++.+++.+++.
T Consensus 171 ~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 171 QEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 237 (340)
T ss_dssp HHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCcccccccHHHHHHHhC
Confidence 9888888875552 112 23334444433 3333333333332211111122577777665544
No 87
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.66 E-value=8.1e-05 Score=57.95 Aligned_cols=82 Identities=10% Similarity=0.209 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcC----CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCcccc
Q 030960 2 VRDVFRLAKENA----PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (168)
Q Consensus 2 l~~iF~~a~~~~----p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (168)
++++.+.+.... .-|++|||+|.+-. ...+.|+..|+. ..+++++|.+|++++.+.++++
T Consensus 67 ir~li~~~~~~p~~~~~kvviIdead~lt~--------------~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI~ 130 (305)
T 2gno_A 67 IRTIKDFLNYSPELYTRKYVIVHDCERMTQ--------------QAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIK 130 (305)
T ss_dssp HHHHHHHHTSCCSSSSSEEEEETTGGGBCH--------------HHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHhhccccCCceEEEeccHHHhCH--------------HHHHHHHHHHhC--CCCCeEEEEEECChHhChHHHH
Confidence 567777775432 46999999999831 335668888873 4557778888899999999999
Q ss_pred CCCCcceEEecCCCCHHHHHHHHHhhc
Q 030960 78 RPGRLDRKIEFPLPDRRQKRLVFQMNL 104 (168)
Q Consensus 78 r~grf~~~i~~~~P~~~~R~~il~~~l 104 (168)
+ | .+.|++|+.++..+.++..+
T Consensus 131 S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 131 S--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp T--T---SEEEECCCCHHHHHHHHHHH
T ss_pred c--e---eEeCCCCCHHHHHHHHHHHh
Confidence 9 8 89999999999999987665
No 88
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.42 E-value=0.00025 Score=55.02 Aligned_cols=119 Identities=20% Similarity=0.261 Sum_probs=64.8
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCC---------CCCCeEEEEecCCC-------CCCCcccc
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD---------QTVNVKVIMATNRA-------DTLDPALL 77 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vi~ttn~~-------~~ld~al~ 77 (168)
+++|||||+|.+.. .....++..++.-. ....+.+|++||.. ..+++.+.
T Consensus 97 ~g~L~LDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~ 162 (304)
T 1ojl_A 97 GGTLFLDEIGDISP--------------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLY 162 (304)
T ss_dssp TSEEEEESCTTCCH--------------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHH
T ss_pred CCEEEEeccccCCH--------------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHH
Confidence 58999999998842 12233444444211 12358899999975 12344455
Q ss_pred CCCCcc-eEEecCCCC--HHHHHHHHHhhcC----------CCCC---HHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCC
Q 030960 78 RPGRLD-RKIEFPLPD--RRQKRLVFQMNLS----------DEVD---LEDYVSRPDKISAAEIAAICQEAGMHAVRKNR 141 (168)
Q Consensus 78 r~grf~-~~i~~~~P~--~~~R~~il~~~l~----------~~~~---~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~ 141 (168)
. ||. ..+.+|+.. .++...++++++. ..++ +..+..+.-.-..++|.+++..++..+ ..
T Consensus 163 ~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~---~~ 237 (304)
T 1ojl_A 163 Y--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL---TG 237 (304)
T ss_dssp H--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC---CS
T ss_pred h--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC---CC
Confidence 4 554 334454444 3344445554332 1122 344555542235678888888876644 23
Q ss_pred CccCHHHHHH
Q 030960 142 YVILPKDFEK 151 (168)
Q Consensus 142 ~~i~~~d~~~ 151 (168)
..|+.+|+..
T Consensus 238 ~~i~~~~l~~ 247 (304)
T 1ojl_A 238 EYISERELPL 247 (304)
T ss_dssp SSBCGGGSCG
T ss_pred CcccHHhhhh
Confidence 4566666643
No 89
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.35 E-value=0.0001 Score=68.81 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCCeEEEEccccccccccc---CCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCC-CCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARF---DAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA-DTLD 73 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~---~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~-~~ld 73 (168)
|+.+|.+|+..+||+|++|++|+|++.+. ...........++++++|+.++++....+|+|| +||+. +.+.
T Consensus 1149 l~~~~~~ar~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~~~~~~ 1223 (1706)
T 3cmw_A 1149 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQIRMKIG 1223 (1706)
T ss_dssp HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECEEECTT
T ss_pred HHHHHHHHHhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccccccch
Confidence 57889999999999999999999999853 222222245568999999999988777788888 55554 4443
No 90
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.19 E-value=0.00046 Score=51.95 Aligned_cols=118 Identities=17% Similarity=0.152 Sum_probs=65.8
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCC---------CCCCCeEEEEecCCC-------CCCCccc
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF---------DQTVNVKVIMATNRA-------DTLDPAL 76 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~v~vi~ttn~~-------~~ld~al 76 (168)
.+.+|||||+|.+.. .....++..++.- ....++.+|+|||.+ ..+++++
T Consensus 100 ~~~~l~lDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L 165 (265)
T 2bjv_A 100 DGGTLFLDELATAPM--------------MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADL 165 (265)
T ss_dssp TTSEEEEESGGGSCH--------------HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHH
T ss_pred CCcEEEEechHhcCH--------------HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHH
Confidence 368999999998742 1222333333311 112357889999874 2467888
Q ss_pred cCCCCcc-eEEecCCCCH--HHHHHHHHhhcC-------C----CCCH---HHHHhCCCCCCHHHHHHHHHHHHHHHHHh
Q 030960 77 LRPGRLD-RKIEFPLPDR--RQKRLVFQMNLS-------D----EVDL---EDYVSRPDKISAAEIAAICQEAGMHAVRK 139 (168)
Q Consensus 77 ~r~grf~-~~i~~~~P~~--~~R~~il~~~l~-------~----~~~~---~~la~~t~g~s~~di~~l~~~a~~~a~~~ 139 (168)
.. ||+ ..+.+|+... ++...+++.++. . .++- ..+....-.-..++|.++++.++..+
T Consensus 166 ~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~--- 240 (265)
T 2bjv_A 166 LD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH--- 240 (265)
T ss_dssp HH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH---
T ss_pred HH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC---
Confidence 88 886 3455555543 444445443322 1 2222 23433332235678888888876554
Q ss_pred CCCccCHHHH
Q 030960 140 NRYVILPKDF 149 (168)
Q Consensus 140 ~~~~i~~~d~ 149 (168)
....|+.+|+
T Consensus 241 ~~~~i~~~~l 250 (265)
T 2bjv_A 241 GTSDYPLDDI 250 (265)
T ss_dssp CCSSSCBCCC
T ss_pred CCCcCcHHHc
Confidence 2345666655
No 91
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.18 E-value=0.0041 Score=51.27 Aligned_cols=128 Identities=16% Similarity=0.161 Sum_probs=80.9
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhcc-------CCCCCCCeEEEEecCCCC-----------CCCcc
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMD-------GFDQTVNVKVIMATNRAD-----------TLDPA 75 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~-------~~~~~~~v~vi~ttn~~~-----------~ld~a 75 (168)
-.++|+||++.+-. .....+++.|+ +..-..++.||||+|-.. .|+++
T Consensus 301 gGvl~lDEIn~~~~--------------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~a 366 (506)
T 3f8t_A 301 GGILAVDHLEGAPE--------------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQD 366 (506)
T ss_dssp TSEEEEECCTTCCH--------------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHH
T ss_pred CCeeehHhhhhCCH--------------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChH
Confidence 37999999997621 33344444443 211134688999999765 88999
Q ss_pred ccCCCCcceEEe-cCCCCHHHH-------------HHHHH----hhcCCCCC---HHHH---------H--------hCC
Q 030960 76 LLRPGRLDRKIE-FPLPDRRQK-------------RLVFQ----MNLSDEVD---LEDY---------V--------SRP 117 (168)
Q Consensus 76 l~r~grf~~~i~-~~~P~~~~R-------------~~il~----~~l~~~~~---~~~l---------a--------~~t 117 (168)
++. |||..+. ++.|+.+.- .+++. ..+...++ .+.+ . ...
T Consensus 367 lLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~ 444 (506)
T 3f8t_A 367 FLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPT 444 (506)
T ss_dssp HHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred Hhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCccccccccccc
Confidence 999 9997654 467765431 11111 11121111 0000 0 035
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 118 DKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 118 ~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
-|.|++.+..+++-|...|.-+++..++.+|+.+|+.-+.
T Consensus 445 ~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 445 LPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVD 484 (506)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999997544
No 92
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.13 E-value=0.00048 Score=50.33 Aligned_cols=74 Identities=14% Similarity=0.211 Sum_probs=52.6
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCC
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P 91 (168)
..++||+|||++.+++.+..... . . + ++..+.. ....++-+|.+|+.+..|+.+++. |++..+++++|
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e-~-~---r----ll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~ 153 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSK-I-P---E----NVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASN 153 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCC-C-C---H----HHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEEC
T ss_pred cCceEEEEEChhhhccCccccch-h-H---H----HHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCc
Confidence 34899999999999876532211 1 1 2 4445543 334466778888889999999998 99999999887
Q ss_pred CHHHHH
Q 030960 92 DRRQKR 97 (168)
Q Consensus 92 ~~~~R~ 97 (168)
....|.
T Consensus 154 ~~~~~~ 159 (199)
T 2r2a_A 154 KMGMRT 159 (199)
T ss_dssp SSCCEE
T ss_pred ccCcce
Confidence 655543
No 93
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.68 E-value=0.013 Score=45.58 Aligned_cols=133 Identities=11% Similarity=0.064 Sum_probs=80.7
Q ss_pred HHHHHHHHHHc----CCeEEEEccccc-ccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCC------C
Q 030960 2 VRDVFRLAKEN----APAIIFIDEVDA-IATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA------D 70 (168)
Q Consensus 2 l~~iF~~a~~~----~p~ii~iDe~D~-l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~------~ 70 (168)
++++.+.+... ..-||+|||+|. +.. ...+.++..++.. .+.+++|.+|+.+ .
T Consensus 61 ~~~l~~~~~~~plf~~~kvvii~~~~~kl~~--------------~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~ 124 (343)
T 1jr3_D 61 WNAIFSLCQAMSLFASRQTLLLLLPENGPNA--------------AINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENA 124 (343)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEECCSSCCCT--------------THHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTS
T ss_pred HHHHHHHhcCcCCccCCeEEEEECCCCCCCh--------------HHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhh
Confidence 35566665532 367999999987 421 2344566666642 2344444444443 4
Q ss_pred CCCccccCCCCcceEEecCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCcc
Q 030960 71 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVI 144 (168)
Q Consensus 71 ~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i 144 (168)
.+.+++.+ |. ..+.+.+|+..+....++..+. +...+..+++.++| +.+++.+.++.....+ +...|
T Consensus 125 k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~I 197 (343)
T 1jr3_D 125 AWFTALAN--RS-VQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKL 197 (343)
T ss_dssp HHHHHHTT--TC-EEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEE
T ss_pred HHHHHHHh--Cc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCC
Confidence 57777777 54 5788999998888877775543 12234567776655 6666666666554432 34468
Q ss_pred CHHHHHHHHHhhc
Q 030960 145 LPKDFEKGYRTNV 157 (168)
Q Consensus 145 ~~~d~~~al~~~~ 157 (168)
|.+++.+.+....
T Consensus 198 t~e~V~~~~~~~~ 210 (343)
T 1jr3_D 198 TLPRVEQAVNDAA 210 (343)
T ss_dssp CHHHHHHHHHHHC
T ss_pred CHHHHHHHHhhhh
Confidence 8888887766543
No 94
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.18 E-value=0.019 Score=44.16 Aligned_cols=105 Identities=15% Similarity=0.220 Sum_probs=59.2
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC---------CCCccccCCCCc
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD---------TLDPALLRPGRL 82 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~---------~ld~al~r~grf 82 (168)
..|.+|+|||++.+.... ...+......+..+.... .++.+|.|++... .....+ .||+
T Consensus 127 ~~~~vlvlDe~~~~~~~~----~~~~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~~l~~~~~~~~l--~~~~ 194 (350)
T 2qen_A 127 LGEFIVAFDEAQYLRFYG----SRGGKELLALFAYAYDSL------PNLKIILTGSEVGLLHDFLKITDYESPL--YGRI 194 (350)
T ss_dssp HSCEEEEEETGGGGGGBT----TTTTHHHHHHHHHHHHHC------TTEEEEEEESSHHHHHHHHCTTCTTSTT--TTCC
T ss_pred cCCEEEEEeCHHHHhccC----ccchhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHHHHhhcCCCCcc--ccCc
Confidence 359999999999986411 011122223333332221 3565666554321 111222 2477
Q ss_pred ceEEecCCCCHHHHHHHHHhhcC------CCCCHHHHHhCCCCCCHHHHHHHH
Q 030960 83 DRKIEFPLPDRRQKRLVFQMNLS------DEVDLEDYVSRPDKISAAEIAAIC 129 (168)
Q Consensus 83 ~~~i~~~~P~~~~R~~il~~~l~------~~~~~~~la~~t~g~s~~di~~l~ 129 (168)
...+.+++.+.++-.++++..+. +...+..+...|.|+- .-+..++
T Consensus 195 ~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P-~~l~~~~ 246 (350)
T 2qen_A 195 AGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP-GWLVVFG 246 (350)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred cceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH-HHHHHHH
Confidence 78999999999999999986542 1123456677777754 3344443
No 95
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.17 E-value=0.032 Score=42.92 Aligned_cols=112 Identities=17% Similarity=0.187 Sum_probs=65.4
Q ss_pred HHHHHHHHHc--CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC--------
Q 030960 3 RDVFRLAKEN--APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL-------- 72 (168)
Q Consensus 3 ~~iF~~a~~~--~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l-------- 72 (168)
..+++..... .|.+|+|||++.+.... +.. ....+..+.... .++.+|.|++....+
T Consensus 125 ~~l~~~l~~~~~~~~vlvlDe~~~~~~~~----~~~---~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~ 191 (357)
T 2fna_A 125 ANLLESFEQASKDNVIIVLDEAQELVKLR----GVN---LLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVED 191 (357)
T ss_dssp HHHHHHHHHTCSSCEEEEEETGGGGGGCT----TCC---CHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTC
T ss_pred HHHHHHHHhcCCCCeEEEEECHHHhhccC----chh---HHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccC
Confidence 4555555543 49999999999986421 011 113333333221 256566666543211
Q ss_pred -CccccCCCCcceEEecCCCCHHHHHHHHHhhcC----CCCCHHHHHhCCCCCCHHHHHHHHH
Q 030960 73 -DPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS----DEVDLEDYVSRPDKISAAEIAAICQ 130 (168)
Q Consensus 73 -d~al~r~grf~~~i~~~~P~~~~R~~il~~~l~----~~~~~~~la~~t~g~s~~di~~l~~ 130 (168)
...+ .||+...+.+++.+.++-.++++..+. ...+...+...|.|+-. -+..++.
T Consensus 192 ~~~~l--~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~i~~~t~G~P~-~l~~~~~ 251 (357)
T 2fna_A 192 PESPL--FGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIGGIPG-WLTYFGF 251 (357)
T ss_dssp TTSTT--TTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSCHH-HHHHHHH
T ss_pred CCCcc--ccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHHHHHHHhCCCHH-HHHHHHH
Confidence 1122 347778999999999999999986542 22234778888888643 3444443
No 96
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.89 E-value=0.017 Score=45.38 Aligned_cols=69 Identities=20% Similarity=0.289 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccc
Q 030960 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPAL 76 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al 76 (168)
+.+++...... +|+||+++.+......... .....+.+.+++..|.++.+..++.+|++|| +...|+++
T Consensus 174 ~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s~--~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 174 DDIARAMLQHR--VIVIDSLKNVIGAAGGNTT--SGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp HHHHHHHHHCS--EEEEECCTTTC-------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred HHHHHHHhhCC--EEEEecccccccccccccc--cchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 44566666654 9999999999754422110 0011244555555555544455777888888 77777765
No 97
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=94.62 E-value=0.12 Score=41.24 Aligned_cols=124 Identities=20% Similarity=0.264 Sum_probs=62.2
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHh--ccCCCC----CCCeEEEEecCCCCCCCccccCCCCcce---
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQ--MDGFDQ----TVNVKVIMATNRADTLDPALLRPGRLDR--- 84 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~--l~~~~~----~~~v~vi~ttn~~~~ld~al~r~grf~~--- 84 (168)
..+|||||++.+-. ..+..+..++.. +..+.. ...+-+|++||..- . .+...|+|..
T Consensus 232 ~gtlfldei~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l--~-~~~~~g~fr~dl~ 297 (387)
T 1ny5_A 232 GGTLFLDEIGELSL-----------EAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNI--K-ELVKEGKFREDLY 297 (387)
T ss_dssp TSEEEEESGGGCCH-----------HHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCH--H-HHHHTTSSCHHHH
T ss_pred CcEEEEcChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCH--H-HHHHcCCccHHHH
Confidence 47999999998831 122223333332 111111 12577999998532 1 2334455532
Q ss_pred ----EEecCCCCH----HHHHHHHHhhcC-------C---CCCH---HHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 030960 85 ----KIEFPLPDR----RQKRLVFQMNLS-------D---EVDL---EDYVSRPDKISAAEIAAICQEAGMHAVRKNRYV 143 (168)
Q Consensus 85 ----~i~~~~P~~----~~R~~il~~~l~-------~---~~~~---~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~ 143 (168)
.+.+..|.. ++...++++++. . .++- ..+..+.=--..++|+++++.|+..+ ....
T Consensus 298 ~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~---~~~~ 374 (387)
T 1ny5_A 298 YRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS---EGKF 374 (387)
T ss_dssp HHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC---CSSE
T ss_pred HhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC---CCCc
Confidence 123334444 344444444432 1 1222 22333221113468999988887654 3357
Q ss_pred cCHHHHHHHHH
Q 030960 144 ILPKDFEKGYR 154 (168)
Q Consensus 144 i~~~d~~~al~ 154 (168)
|+.+|+...++
T Consensus 375 i~~~~l~~~~~ 385 (387)
T 1ny5_A 375 IDRGELSCLVN 385 (387)
T ss_dssp ECHHHHHHHC-
T ss_pred CcHHHCcHhhh
Confidence 88888865543
No 98
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.73 E-value=0.35 Score=38.26 Aligned_cols=84 Identities=11% Similarity=0.170 Sum_probs=53.9
Q ss_pred HHHHHHHHH--cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCc------
Q 030960 3 RDVFRLAKE--NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP------ 74 (168)
Q Consensus 3 ~~iF~~a~~--~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~------ 74 (168)
..+|..+.. ..|.++++||+..++... .......+..++... ...++.++.+|.++.++..
T Consensus 250 ~~i~~~~~~~~~~~~~i~iDEa~~~~~~~-------~~~~~~~l~~~~~~~----Rk~g~~~~~~tQ~~~d~~~~~~~~~ 318 (392)
T 4ag6_A 250 SFAWNILERDRRERTVLVVDEAWMLVDPQ-------TPQAIAFLRDTSKRI----RKYNGSLIVISQNVIDFLAPEVQRY 318 (392)
T ss_dssp HHHHHHHHHSCCTTCEEEETTGGGGCCTT-------CTHHHHHHHHHHHHG----GGGTCEEEEEESCGGGGGSTTTHHH
T ss_pred HHHHHHHHhCCCccEEEEEecHHHHhCcC-------chHHHHHHHHHHHHh----hhhCeEEEEEcCCHHHhhChhhHHH
Confidence 344555544 359999999999998431 122234455555554 2346778889999998875
Q ss_pred --cccCCCCcceEEecCCCCHHHHHHHH
Q 030960 75 --ALLRPGRLDRKIEFPLPDRRQKRLVF 100 (168)
Q Consensus 75 --al~r~grf~~~i~~~~P~~~~R~~il 100 (168)
+++. ..+..|.++.+. .++..+-
T Consensus 319 ~~~il~--n~~~~i~l~~~~-~~~~~~~ 343 (392)
T 4ag6_A 319 GQALLD--NPTYKLLLAQGE-KDLEAIT 343 (392)
T ss_dssp HHHHHH--SCSEEEECSCCH-HHHHHHH
T ss_pred HHHHHH--hhhhhheeCCCh-hhHHHHH
Confidence 4555 678888888764 4444443
No 99
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.69 E-value=0.022 Score=45.46 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=47.0
Q ss_pred HcCCeEEEEcccccccc-cccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecC
Q 030960 11 ENAPAIIFIDEVDAIAT-ARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFP 89 (168)
Q Consensus 11 ~~~p~ii~iDe~D~l~~-~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~ 89 (168)
..+.+++++||++.+.. .+.... +.. . .....+...+++ .+.|+++||+++.+ +++.+|||++..++..
T Consensus 214 ~~q~~~~l~dd~~~~~~~~r~l~~-~~~--~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l 283 (377)
T 1svm_A 214 AIDQFLVVFEDVKGTGGESRDLPS-GQG--I-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSV 283 (377)
T ss_dssp GTTCSCEEETTCCCSTTTTTTCCC-CSH--H-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCC
T ss_pred hcchhHHHHHHHHHHHHHHhhccc-cCc--c-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhh
Confidence 34567889999999875 332111 111 0 012334444554 35578899999999 7999999999988886
Q ss_pred CC
Q 030960 90 LP 91 (168)
Q Consensus 90 ~P 91 (168)
++
T Consensus 284 ~~ 285 (377)
T 1svm_A 284 PK 285 (377)
T ss_dssp CH
T ss_pred cH
Confidence 63
No 100
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.42 E-value=0.11 Score=35.13 Aligned_cols=47 Identities=11% Similarity=0.179 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCC
Q 030960 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA 69 (168)
Q Consensus 4 ~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~ 69 (168)
..|+.| .+++|||||+|.+-. .....++..+.. ...++.+|+|||.+
T Consensus 70 ~~~~~a---~~g~l~ldei~~l~~--------------~~q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 70 DFIALA---QGGTLVLSHPEHLTR--------------EQQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp HHHHHH---TTSCEEEECGGGSCH--------------HHHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred cHHHHc---CCcEEEEcChHHCCH--------------HHHHHHHHHHhh--cCCCEEEEEECCcC
Confidence 445554 468999999998842 122334444432 23356688888864
No 101
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.27 E-value=0.079 Score=50.63 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccc---cCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATAR---FDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~---~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
++.++..++..+|++|+||+++.+.+.. +...........+++++++..|.++....+++||.|.......
T Consensus 1494 l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~~~~~ 1567 (2050)
T 3cmu_A 1494 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 1567 (2050)
T ss_dssp HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECEEECT
T ss_pred HHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEccccccc
Confidence 4667888889999999999999999753 2111111111347888888888877666777777765443333
No 102
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.08 E-value=0.058 Score=36.57 Aligned_cols=49 Identities=12% Similarity=0.262 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCC
Q 030960 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA 69 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~ 69 (168)
..+|+.| .+.+|||||+|.+... ....++..++.- ...++.+|+|||.+
T Consensus 68 ~~~~~~a---~~~~l~lDei~~l~~~--------------~q~~Ll~~l~~~-~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 68 MELLQKA---EGGVLYVGDIAQYSRN--------------IQTGITFIIGKA-ERCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHT---TTSEEEEEECTTCCHH--------------HHHHHHHHHHHH-TTTTCEEEEEEEEC
T ss_pred hhHHHhC---CCCeEEEeChHHCCHH--------------HHHHHHHHHHhC-CCCCEEEEEecCCC
Confidence 3455554 3689999999988421 122233333321 13457788888864
No 103
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.40 E-value=2.2 Score=42.25 Aligned_cols=118 Identities=13% Similarity=0.129 Sum_probs=72.6
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHH----HHHHhccC-----------CCCCCCeEEEEecC
Q 030960 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILM----ELLNQMDG-----------FDQTVNVKVIMATN 67 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~----~ll~~l~~-----------~~~~~~v~vi~ttn 67 (168)
..+|.-|.+. ++.+++||++.+-. ...++++ .++..+.. +.-.++..|++|.|
T Consensus 688 g~~~~g~~~~-Gaw~~~DE~nr~~~-----------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~N 755 (2695)
T 4akg_A 688 SRLLVGITQI-GAWGCFDEFNRLDE-----------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLN 755 (2695)
T ss_dssp HHHHHHHHHH-TCEEEEETTTSSCH-----------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEEC
T ss_pred hHHHHHHHhc-CCEeeehhhhhcCh-----------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeC
Confidence 4567766665 59999999997632 1223332 22222211 01234567888888
Q ss_pred ----CCCCCCccccCCCCcceEEecCCCCHHHHHHHHHhhcC--CCCC--------HHHHHhCCC-----CCCHHHHHHH
Q 030960 68 ----RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLS--DEVD--------LEDYVSRPD-----KISAAEIAAI 128 (168)
Q Consensus 68 ----~~~~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~--~~~~--------~~~la~~t~-----g~s~~di~~l 128 (168)
....||+++++ || +.+.+..|+.+...+|+-...+ .... +..+.+... .|..+.|..+
T Consensus 756 Pgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei~l~s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksv 832 (2695)
T 4akg_A 756 PGYNGRSELPENLKK--SF-REFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGV 832 (2695)
T ss_dssp CCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHH
T ss_pred CCccCcccccHHHHh--he-EEEEeeCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHH
Confidence 56689999998 88 6899999999999998643221 1111 111222222 3788999998
Q ss_pred HHHHHHH
Q 030960 129 CQEAGMH 135 (168)
Q Consensus 129 ~~~a~~~ 135 (168)
+..|...
T Consensus 833 L~~ag~l 839 (2695)
T 4akg_A 833 LRNCSPL 839 (2695)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8876543
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.77 E-value=0.64 Score=46.46 Aligned_cols=81 Identities=14% Similarity=0.220 Sum_probs=54.8
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhc---cC----CCCCCCeEEEEecCCC-----CCCCccccCCCC
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQM---DG----FDQTVNVKVIMATNRA-----DTLDPALLRPGR 81 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l---~~----~~~~~~v~vi~ttn~~-----~~ld~al~r~gr 81 (168)
..|+||||++---... ........++.+++..- +. ...-.++.+|||.|.| ..|+++++| |
T Consensus 1375 ~~VlFiDDiNmp~~D~-----yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~ 1447 (3245)
T 3vkg_A 1375 WLVVFCDEINLPSTDK-----YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--H 1447 (3245)
T ss_dssp EEEEEETTTTCCCCCT-----TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--T
T ss_pred eEEEEecccCCCCccc-----cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--h
Confidence 4799999998532222 11222335556665431 11 0112357899999987 579999999 9
Q ss_pred cceEEecCCCCHHHHHHHHHh
Q 030960 82 LDRKIEFPLPDRRQKRLVFQM 102 (168)
Q Consensus 82 f~~~i~~~~P~~~~R~~il~~ 102 (168)
|.. ++++.|+.+.-..|+..
T Consensus 1448 F~v-i~i~~ps~esL~~If~t 1467 (3245)
T 3vkg_A 1448 API-LLVDFPSTSSLTQIYGT 1467 (3245)
T ss_dssp CCE-EECCCCCHHHHHHHHHH
T ss_pred ceE-EEeCCCCHHHHHHHHHH
Confidence 976 89999999999999763
No 105
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=88.84 E-value=0.53 Score=39.61 Aligned_cols=75 Identities=13% Similarity=0.365 Sum_probs=54.8
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC--CCCccccCCCCcceEEecCCC
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD--TLDPALLRPGRLDRKIEFPLP 91 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~--~ld~al~r~grf~~~i~~~~P 91 (168)
+.+|+|||+..++... .......+..+. ..-..-+|.+|.+|.+|. .|+..++. -|...|.+...
T Consensus 344 ~ivvVIDE~~~L~~~~-------~~~~~~~L~~Ia----r~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~ 410 (574)
T 2iut_A 344 TIVVVVDEFADMMMIV-------GKKVEELIARIA----QKARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVS 410 (574)
T ss_dssp EEEEEESCCTTHHHHT-------CHHHHHHHHHHH----HHCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCS
T ss_pred cEEEEEeCHHHHhhhh-------hHHHHHHHHHHH----HHHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcC
Confidence 3689999999887432 112223333322 223456899999999998 89888887 89999999999
Q ss_pred CHHHHHHHHH
Q 030960 92 DRRQKRLVFQ 101 (168)
Q Consensus 92 ~~~~R~~il~ 101 (168)
+..+...++.
T Consensus 411 s~~Dsr~ILd 420 (574)
T 2iut_A 411 SKIDSRTILD 420 (574)
T ss_dssp CHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 9999888884
No 106
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=88.76 E-value=0.14 Score=35.05 Aligned_cols=61 Identities=13% Similarity=0.280 Sum_probs=32.2
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCC-eEEEEecCCCCCCC--ccccCCCCcceEEecC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVN-VKVIMATNRADTLD--PALLRPGRLDRKIEFP 89 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-v~vi~ttn~~~~ld--~al~r~grf~~~i~~~ 89 (168)
.|.+|+|||++.+.... +..+-.+++.+. .... +++|.+...|..+. +.+.+ |+..-..+.
T Consensus 83 ~~~lLilDE~~~~~~~~-----------~~~l~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~~ 146 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEE-----------QALLFSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVYE 146 (149)
T ss_dssp GCSEEEEESTTCCCSHH-----------HHHHHHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEECC
T ss_pred CCCEEEEeCccccChHH-----------HHHHHHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH--HHhcCeeEE
Confidence 58899999998753211 233333444332 2223 34554443565554 66776 766544443
No 107
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=87.97 E-value=0.51 Score=37.25 Aligned_cols=75 Identities=25% Similarity=0.475 Sum_probs=40.0
Q ss_pred CeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhcc-----CCCCC----CCeEEEEecCCCCCCCccccCCCCcce
Q 030960 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMD-----GFDQT----VNVKVIMATNRADTLDPALLRPGRLDR 84 (168)
Q Consensus 14 p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~-----~~~~~----~~v~vi~ttn~~~~ld~al~r~grf~~ 84 (168)
...||+||++.+-. .+...++..++ .+... ..+-+|++||. ++. .....|+|..
T Consensus 223 ~gtlfldei~~l~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~--~l~-~~v~~g~fr~ 285 (368)
T 3dzd_A 223 QGTLFLDEVGELDQ--------------RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNK--NLE-EEIKKGNFRE 285 (368)
T ss_dssp TSEEEEETGGGSCH--------------HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESS--CHH-HHHHTTSSCH
T ss_pred CCeEEecChhhCCH--------------HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCC--CHH-HHHHcCCccH
Confidence 46899999998831 22223333332 11111 24678888884 232 3334566644
Q ss_pred ---------EEecCCCCH--HHHHHHHHhhcC
Q 030960 85 ---------KIEFPLPDR--RQKRLVFQMNLS 105 (168)
Q Consensus 85 ---------~i~~~~P~~--~~R~~il~~~l~ 105 (168)
.|++|+... ++...++++++.
T Consensus 286 dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~ 317 (368)
T 3dzd_A 286 DLYYRLSVFQIYLPPLRERGKDVILLAEYFLK 317 (368)
T ss_dssp HHHHHHTSEEEECCCGGGSTTHHHHHHHHHHH
T ss_pred HHHHHhCCeEEeCCChhhchhhHHHHHHHHHH
Confidence 456665544 555555555543
No 108
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=85.43 E-value=1.4 Score=30.45 Aligned_cols=45 Identities=9% Similarity=0.116 Sum_probs=25.5
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (168)
.|.+|+|||++.... +......+..++.... . .+..+|.|||.+.
T Consensus 100 ~~~llilDE~~~~~~---------~~~~~~~l~~ll~~~~---~-~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 100 NSPVLVLDDLGSERL---------SDWQRELISYIITYRY---N-NLKSTIITTNYSL 144 (180)
T ss_dssp TCSEEEEETCSSSCC---------CHHHHHHHHHHHHHHH---H-TTCEEEEECCCCS
T ss_pred CCCEEEEeCCCCCcC---------CHHHHHHHHHHHHHHH---H-cCCCEEEEcCCCh
Confidence 589999999985421 1222344444444432 1 2345777777654
No 109
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=81.78 E-value=2.5 Score=25.23 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 124 EIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 124 di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
-+..++++|...+...+++.++.+|+..|++
T Consensus 39 r~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 39 KLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 3556677787777788889999999999985
No 110
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=81.02 E-value=2.5 Score=24.71 Aligned_cols=34 Identities=24% Similarity=0.098 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 123 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 123 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
.-|..+..+|...|...+++.|+.+|+..|++..
T Consensus 34 ~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 34 EMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 4566777888888888899999999999998764
No 111
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=80.23 E-value=1.4 Score=36.53 Aligned_cols=75 Identities=15% Similarity=0.412 Sum_probs=53.3
Q ss_pred Ce-EEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC--CCCccccCCCCcceEEecCC
Q 030960 14 PA-IIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD--TLDPALLRPGRLDRKIEFPL 90 (168)
Q Consensus 14 p~-ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~--~ld~al~r~grf~~~i~~~~ 90 (168)
|- +|+|||+..++... ... +..++..+-..-..-++.+|.+|.+|. .++..++. -|...|.+..
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~~----~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GKK----VEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HHH----HHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhhh-------hHH----HHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 64 89999998876421 111 223333332223445788999999998 58877877 8999999999
Q ss_pred CCHHHHHHHHH
Q 030960 91 PDRRQKRLVFQ 101 (168)
Q Consensus 91 P~~~~R~~il~ 101 (168)
.+..+...++.
T Consensus 364 ~s~~dsr~ilg 374 (512)
T 2ius_A 364 SSKIDSRTILD 374 (512)
T ss_dssp SSHHHHHHHHS
T ss_pred CCHHHHHHhcC
Confidence 99999998886
No 112
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=79.33 E-value=3.2 Score=26.61 Aligned_cols=35 Identities=6% Similarity=0.086 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 122 AAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 122 ~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
-.-++.++++|...+-..+++.|+.+|+..|++..
T Consensus 59 e~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 59 KSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 34577788889888988899999999999999976
No 113
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=79.08 E-value=4.4 Score=24.30 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 125 IAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 125 i~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
+..+..+|...|...+++.|+.+|+..|++...
T Consensus 39 i~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll 71 (76)
T 3b0c_W 39 LHRLAEEARTNAFENKSKIIKPEHTIAAAKVIL 71 (76)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 556777788888888999999999999998754
No 114
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.28 E-value=2.6 Score=40.62 Aligned_cols=72 Identities=14% Similarity=0.230 Sum_probs=46.5
Q ss_pred HHHHHHHHHH----cCCeEEEEcccccccc-ccc--CCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 2 VRDVFRLAKE----NAPAIIFIDEVDAIAT-ARF--DAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 2 l~~iF~~a~~----~~p~ii~iDe~D~l~~-~~~--~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+..+++.+++ ..|++|+||.+..+.. ... ...+....-..+.++.++..|.++.+..++.||++..-....+
T Consensus 795 i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r~~e 873 (2050)
T 3cmu_A 795 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 873 (2050)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTT
T ss_pred HHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccccch
Confidence 4566777765 7899999999999986 321 1111111122355777778887776777888888766554444
No 115
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=77.16 E-value=2.8 Score=25.82 Aligned_cols=36 Identities=8% Similarity=0.060 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 121 SAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 121 s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
.-.-++.++++|...+-..+++.|+.+|+..|++..
T Consensus 40 l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 40 LKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 345677788889999988899999999999999865
No 116
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=76.00 E-value=4.5 Score=25.88 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 123 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 123 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
.-++.++++|...+-...++.|+.+|+..|++..
T Consensus 61 ~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 61 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 4566777888888888888999999999999976
No 117
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=75.95 E-value=4.5 Score=25.88 Aligned_cols=35 Identities=9% Similarity=0.066 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 123 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 123 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
.-++.++++|...+-...++.|+.+|+..|++...
T Consensus 61 ~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 61 TFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 34666778888888888889999999999999763
No 118
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=75.53 E-value=3.8 Score=29.37 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 4 ~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+.+.+....|.+|+||++-.+....-... +......+.+..++..+..+....++.||.++.......
T Consensus 110 ~~~~~~~~~~~~lliiD~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~ 178 (243)
T 1n0w_A 110 QASAMMVESRYALLIVDSATALYRTDYSGR-GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 178 (243)
T ss_dssp HHHHHHHHSCEEEEEEETSSGGGC--------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred HHHHHHhcCCceEEEEeCchHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCC
Confidence 344555667899999999998874321100 010111112333333333322333566777766544443
No 119
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=75.14 E-value=5.1 Score=28.75 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=41.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC-----ccccCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD-----PALLRP 79 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld-----~al~r~ 79 (168)
+...+....|.+|++||.-+...... ........+..++..+. ..++.+|.+|+..+... +.+..
T Consensus 127 ~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~----~~g~tii~vtH~~~~~~~~~~~~~i~~- 196 (251)
T 2ehv_A 127 IYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILL----EMGVTTILTTEAPDPQHGKLSRYGIEE- 196 (251)
T ss_dssp HHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHH----HHCCEEEEEECCC----CCSSSSSCGG-
T ss_pred HHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHH----HCCCeEEEEECCCCCCcccccccChhh-
Confidence 33444567899999999988764321 11223344555665553 22566778888776652 22222
Q ss_pred CCc-ceEEecC
Q 030960 80 GRL-DRKIEFP 89 (168)
Q Consensus 80 grf-~~~i~~~ 89 (168)
-+ |..+.+.
T Consensus 197 -~~aD~vi~l~ 206 (251)
T 2ehv_A 197 -FIARGVIVLD 206 (251)
T ss_dssp -GGCSEEEEEE
T ss_pred -EeeeEEEEEe
Confidence 45 7777664
No 120
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=74.91 E-value=4.1 Score=28.17 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcCCC
Q 030960 123 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKP 160 (168)
Q Consensus 123 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~~ 160 (168)
.-+..+..+|...|-+.+++.|+.+|+..|++...|..
T Consensus 114 ~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~~~ 151 (154)
T 1f1e_A 114 RATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMPKG 151 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCCcc
Confidence 34566777888888888999999999999999998864
No 121
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=72.52 E-value=4.9 Score=23.60 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 030960 119 KISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 154 (168)
Q Consensus 119 g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 154 (168)
++.-.-+..++.+|...|...+++.|+.+|+.-|++
T Consensus 34 e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 34 EYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 345567788888999999999999999999998875
No 122
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=72.46 E-value=14 Score=30.33 Aligned_cols=78 Identities=8% Similarity=0.139 Sum_probs=46.6
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEec---C
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEF---P 89 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~---~ 89 (168)
.|.+|+|||++.. . .+..+ ..+..||.||....-... . . +..+.+ +
T Consensus 236 ~~~LLVLDdv~~~----------------~----~l~~l-----~~~~~ilvTsR~~~~~~~-~-~----~~~~~v~~l~ 284 (591)
T 1z6t_A 236 PRSLLILDDVWDS----------------W----VLKAF-----DSQCQILLTTRDKSVTDS-V-M----GPKYVVPVES 284 (591)
T ss_dssp TTCEEEEEEECCH----------------H----HHHTT-----CSSCEEEEEESCGGGGTT-C-C----SCEEEEECCS
T ss_pred CCeEEEEeCCCCH----------------H----HHHHh-----cCCCeEEEECCCcHHHHh-c-C----CCceEeecCC
Confidence 6899999999742 1 12222 234567777776542221 1 1 223333 4
Q ss_pred CCCHHHHHHHHHhhcCC-----CCCHHHHHhCCCCCC
Q 030960 90 LPDRRQKRLVFQMNLSD-----EVDLEDYVSRPDKIS 121 (168)
Q Consensus 90 ~P~~~~R~~il~~~l~~-----~~~~~~la~~t~g~s 121 (168)
+.+.++-.++|...... ......+++.|.|+-
T Consensus 285 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 285 SLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp SCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 67889989999866543 223567888887753
No 123
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=70.73 E-value=12 Score=27.93 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=30.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (168)
.+..|-...|.||++||--+ +-+......+..++..+ ....+..||.+|.+++.
T Consensus 166 ~lAraL~~~p~lllLDEPts----------~LD~~~~~~i~~~l~~~---~~~~g~tviivtHd~~~ 219 (271)
T 2ixe_A 166 ALARALIRKPRLLILDNATS----------ALDAGNQLRVQRLLYES---PEWASRTVLLITQQLSL 219 (271)
T ss_dssp HHHHHHTTCCSEEEEESTTT----------TCCHHHHHHHHHHHHHC---TTTTTSEEEEECSCHHH
T ss_pred HHHHHHhcCCCEEEEECCcc----------CCCHHHHHHHHHHHHHH---HhhcCCEEEEEeCCHHH
Confidence 34555567799999999543 23333334444454444 22224456777776543
No 124
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=70.50 E-value=18 Score=26.73 Aligned_cols=53 Identities=17% Similarity=0.359 Sum_probs=30.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.|+++||--+ +-+......+..++..+. + +..+|.+|++++.+
T Consensus 165 ~lAraL~~~p~lllLDEPts----------~LD~~~~~~i~~~l~~l~---~--~~tviivtH~~~~~ 217 (260)
T 2ghi_A 165 AIARCLLKDPKIVIFDEATS----------SLDSKTEYLFQKAVEDLR---K--NRTLIIIAHRLSTI 217 (260)
T ss_dssp HHHHHHHHCCSEEEEECCCC----------TTCHHHHHHHHHHHHHHT---T--TSEEEEECSSGGGS
T ss_pred HHHHHHHcCCCEEEEECccc----------cCCHHHHHHHHHHHHHhc---C--CCEEEEEcCCHHHH
Confidence 34455567799999999543 233333444555555553 2 24567777766543
No 125
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=70.48 E-value=13 Score=27.41 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=32.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.++++||-=+ +-+......+..++..+. .. +..||.+|++++.+.
T Consensus 163 ~iAraL~~~p~lllLDEPts----------~LD~~~~~~l~~~l~~l~---~~-g~tvi~vtHd~~~~~ 217 (257)
T 1g6h_A 163 EIGRALMTNPKMIVMDEPIA----------GVAPGLAHDIFNHVLELK---AK-GITFLIIEHRLDIVL 217 (257)
T ss_dssp HHHHHHHTCCSEEEEESTTT----------TCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCCSTTG
T ss_pred HHHHHHHcCCCEEEEeCCcc----------CCCHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHHH
Confidence 34556677899999999432 333333344444555442 22 455777888776553
No 126
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=69.88 E-value=9.3 Score=23.75 Aligned_cols=32 Identities=25% Similarity=0.158 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 124 EIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 124 di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
=|..+..+|...|...+++.|+.+|+..|+++
T Consensus 43 Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~ 74 (93)
T 1n1j_A 43 FISFITSEASERCHQEKRKTINGEDILFAMST 74 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 45667777778888888999999999999974
No 127
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=68.94 E-value=14 Score=27.52 Aligned_cols=55 Identities=22% Similarity=0.330 Sum_probs=32.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.|+++||--+ +-+......+..++..+. .. +..||.+|++++.+.
T Consensus 148 ~lAraL~~~p~lllLDEPts----------~LD~~~~~~l~~~l~~l~---~~-g~tii~vtHd~~~~~ 202 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLV----------GLDREGKTDLLRIVEKWK---TL-GKTVILISHDIETVI 202 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTT----------TCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCCTTTG
T ss_pred HHHHHHHcCCCEEEEcCccc----------cCCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHH
Confidence 34555677899999999543 233333344444554442 22 455777888776543
No 128
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=68.45 E-value=17 Score=25.22 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=12.2
Q ss_pred HHcCCeEEEEccccc
Q 030960 10 KENAPAIIFIDEVDA 24 (168)
Q Consensus 10 ~~~~p~ii~iDe~D~ 24 (168)
-...|.++++||++-
T Consensus 96 l~~~p~llilDEigp 110 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGK 110 (178)
T ss_dssp HHCTTCEEEECCCST
T ss_pred cccCCCEEEEeCCCC
Confidence 456799999999763
No 129
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=68.38 E-value=9.8 Score=25.16 Aligned_cols=36 Identities=6% Similarity=0.082 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcC
Q 030960 123 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158 (168)
Q Consensus 123 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 158 (168)
.-+++++++|...+-..+++.|+.+|+.-|+++.-.
T Consensus 79 ~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~ 114 (121)
T 2ly8_A 79 SFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC
Confidence 446677888888888889999999999999987643
No 130
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=68.33 E-value=2.7 Score=29.66 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=13.5
Q ss_pred CCeEEEEccccccccc
Q 030960 13 APAIIFIDEVDAIATA 28 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~ 28 (168)
.|.+|+||++-.+...
T Consensus 105 ~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 105 NFALVVVDSITAHYRA 120 (220)
T ss_dssp TEEEEEEECCCCCTTG
T ss_pred CCCEEEEcCcHHHhhh
Confidence 4999999999988643
No 131
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=67.57 E-value=22 Score=25.84 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=29.1
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.|+++||--+ +-+......+..++.....+. . +..+|.+|.+++.+
T Consensus 137 ~lAraL~~~p~lllLDEPts----------~LD~~~~~~i~~~l~~~~~~~-~-~~tviivtH~~~~~ 192 (237)
T 2cbz_A 137 SLARAVYSNADIYLFDDPLS----------AVDAHVGKHIFENVIGPKGML-K-NKTRILVTHSMSYL 192 (237)
T ss_dssp HHHHHHHHCCSEEEEESTTT----------TSCHHHHHHHHHHTTSTTSTT-T-TSEEEEECSCSTTG
T ss_pred HHHHHHhcCCCEEEEeCccc----------ccCHHHHHHHHHHHHHHHhhc-C-CCEEEEEecChHHH
Confidence 34555567799999999443 223322222222221112222 2 45677777776644
No 132
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=67.55 E-value=13 Score=27.59 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=30.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.|+++||--+ +-+......+..++..+ ... +..||.+|.+++.+
T Consensus 174 ~iAraL~~~p~lLlLDEPts----------~LD~~~~~~l~~~l~~l---~~~-g~tviivtHd~~~~ 227 (267)
T 2zu0_C 174 DILQMAVLEPELCILDESDS----------GLDIDALKVVADGVNSL---RDG-KRSFIIVTHYQRIL 227 (267)
T ss_dssp HHHHHHHHCCSEEEEESTTT----------TCCHHHHHHHHHHHHTT---CCS-SCEEEEECSSGGGG
T ss_pred HHHHHHHhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHH---Hhc-CCEEEEEeeCHHHH
Confidence 34455567899999999443 33333333444444443 333 45677778876544
No 133
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=66.63 E-value=2.2 Score=32.74 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=35.2
Q ss_pred HHHHHHHHH-cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecC
Q 030960 3 RDVFRLAKE-NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATN 67 (168)
Q Consensus 3 ~~iF~~a~~-~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn 67 (168)
..+....+. ..|.+|+||.+..++....... +........+..++..|.++....++.||.++.
T Consensus 192 ~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 192 DDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp HHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT-TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 345555566 7899999999999874321111 111111234555555555444444566666544
No 134
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=66.61 E-value=5.9 Score=31.20 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=31.3
Q ss_pred HHcCCeEEEEcccccccccccCCCC-Ccc--hHHHHHHHHHHHhccCCCCCCCeEEEEecCC
Q 030960 10 KENAPAIIFIDEVDAIATARFDAQT-GAD--REVQRILMELLNQMDGFDQTVNVKVIMATNR 68 (168)
Q Consensus 10 ~~~~p~ii~iDe~D~l~~~~~~~~~-~~~--~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~ 68 (168)
+...+.+|+||.+..+.+....... +.. ....+.+..++..|..+....++.||++...
T Consensus 149 ~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~ 210 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQV 210 (366)
T ss_dssp TTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred hcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 3467999999999999853211100 000 0112445556666544434456666665443
No 135
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=66.29 E-value=2.7 Score=32.87 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=16.2
Q ss_pred HHHHcCCeEEEEcccccccc
Q 030960 8 LAKENAPAIIFIDEVDAIAT 27 (168)
Q Consensus 8 ~a~~~~p~ii~iDe~D~l~~ 27 (168)
.++...|.+|+||++..+..
T Consensus 134 l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp HHTTTCCSEEEEECGGGCCC
T ss_pred HHhcCCCCEEEEcChHhhcc
Confidence 33456799999999999984
No 136
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=65.00 E-value=21 Score=26.49 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=30.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+ +-+......+..++..+. + .+|.+|++++.+
T Consensus 138 ~lAraL~~~p~lllLDEPts----------~LD~~~~~~l~~~L~~~~---~----tviivtHd~~~~ 188 (263)
T 2pjz_A 138 RTSLALASQPEIVGLDEPFE----------NVDAARRHVISRYIKEYG---K----EGILVTHELDML 188 (263)
T ss_dssp HHHHHHHTCCSEEEEECTTT----------TCCHHHHHHHHHHHHHSC---S----EEEEEESCGGGG
T ss_pred HHHHHHHhCCCEEEEECCcc----------ccCHHHHHHHHHHHHHhc---C----cEEEEEcCHHHH
Confidence 34556677899999999443 333333344444555543 2 577778776543
No 137
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=64.87 E-value=3 Score=29.58 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=29.0
Q ss_pred HHHHHHHcCCe--EEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCC
Q 030960 5 VFRLAKENAPA--IIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA 69 (168)
Q Consensus 5 iF~~a~~~~p~--ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~ 69 (168)
+...+....|. +|++||...+.... ......++..+.... ...++.+|.+|...
T Consensus 113 ~~~~~~~~~~~~~llilDe~~~~~~~d-------~~~~~~~~~~l~~~~----~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 113 VIEAKQKLGYGKARLVIDSVSALFLDK-------PAMARKISYYLKRVL----NKWNFTIYATSQYA 168 (235)
T ss_dssp HHHHHHHHCSSCEEEEEETGGGGSSSC-------GGGHHHHHHHHHHHH----HHTTEEEEEEEC--
T ss_pred HHHHHHhhCCCceEEEEECchHhhcCC-------HHHHHHHHHHHHHHH----HhCCCeEEEEeccC
Confidence 44445566788 99999999875321 111223333333222 22356677777665
No 138
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=64.67 E-value=25 Score=25.70 Aligned_cols=53 Identities=25% Similarity=0.406 Sum_probs=30.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+ +-+......+..++..+. . +..+|.+|.+++.+
T Consensus 155 ~iAraL~~~p~lllLDEPts----------~LD~~~~~~i~~~l~~~~---~--g~tviivtH~~~~~ 207 (247)
T 2ff7_A 155 AIARALVNNPKILIFDEATS----------ALDYESEHVIMRNMHKIC---K--GRTVIIIAHRLSTV 207 (247)
T ss_dssp HHHHHHTTCCSEEEECCCCS----------CCCHHHHHHHHHHHHHHH---T--TSEEEEECSSGGGG
T ss_pred HHHHHHhcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHc---C--CCEEEEEeCCHHHH
Confidence 34455567799999999543 333333444445555552 1 34567777765543
No 139
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=63.46 E-value=2.9 Score=29.65 Aligned_cols=77 Identities=12% Similarity=0.209 Sum_probs=34.9
Q ss_pred HcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCC
Q 030960 11 ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 90 (168)
Q Consensus 11 ~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~ 90 (168)
...|.+|++||.-..+....... +......+....++..+..+....++.||.+|..... +..+.. .-.|..+.+..
T Consensus 123 ~~~~~llilDe~~~~l~~~~~~~-~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~-~g~~~~-~~~d~~l~l~~ 199 (231)
T 4a74_A 123 DRPVKLLIVDSLTSHFRSEYIGR-GALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAN-GGHILA-HSATLRVYLRK 199 (231)
T ss_dssp SSCEEEEEEETSSHHHHHHSCST-THHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSEEEEEEE
T ss_pred CCceeEEEECChHHHhccccCCC-cchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccC-cchhhH-hhceEEEEEEe
Confidence 56799999999988764321111 1111111223334444433333345667777775554 222221 13455555543
No 140
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=63.37 E-value=12 Score=24.22 Aligned_cols=60 Identities=15% Similarity=0.068 Sum_probs=40.5
Q ss_pred HHHHhhcCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcC
Q 030960 98 LVFQMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158 (168)
Q Consensus 98 ~il~~~l~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 158 (168)
+|++..-...+.-+ ....+.++...-+..++.+|...|-..+++.|+.+|+.-|+++..-
T Consensus 15 Ri~r~~g~~rIS~~-a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 15 QIFSHYVKTPVTRD-AYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp HHHHHHHCSCBCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred HHHHHCCCCccCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 36665533333222 2222333455667888899999998999999999999999987543
No 141
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=62.66 E-value=5 Score=31.89 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=49.6
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC--------ccccCCCCcc
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD--------PALLRPGRLD 83 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld--------~al~r~grf~ 83 (168)
..|.++++||+..++.-. .+..++... ...++.++.+|.++.++. .+++. -++
T Consensus 278 ~~~~~~~lDE~~~l~~~~-------------~l~~~~~~~----R~~g~~~~~~~Qs~~ql~~~yG~~~a~~i~~--n~~ 338 (437)
T 1e9r_A 278 KRRLWLFIDELASLEKLA-------------SLADALTKG----RKAGLRVVAGLQSTSQLDDVYGVKEAQTLRA--SFR 338 (437)
T ss_dssp TCCEEEEESCGGGSCBCS-------------SHHHHHHHC----TTTTEEEEEEESCHHHHHHHHCHHHHHHHHT--TCC
T ss_pred CccEEEEEEcccccccch-------------hHHHHHHHH----hccCCEEEEEecCHHHHHHHHCHHHHHHHHh--ccC
Confidence 348999999999986421 122344433 344788999999999887 45666 788
Q ss_pred eEEecCCC--CHHHHHHHH
Q 030960 84 RKIEFPLP--DRRQKRLVF 100 (168)
Q Consensus 84 ~~i~~~~P--~~~~R~~il 100 (168)
..+.++.. +.+....+-
T Consensus 339 ~~i~~~~~~~d~~ta~~~s 357 (437)
T 1e9r_A 339 SLVVLGGSRTDPKTNEDMS 357 (437)
T ss_dssp EEEEEECCTTCHHHHHHHH
T ss_pred cEEEEeCCCCCHHHHHHHH
Confidence 99999888 776665543
No 142
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=62.21 E-value=55 Score=26.78 Aligned_cols=65 Identities=11% Similarity=0.100 Sum_probs=41.0
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~ 92 (168)
.+++|++|+++..- .+ .+... ++..||.||....-.. .. |..+..+.+++.+
T Consensus 243 kr~LlVLDdv~~~~---------------~~--~~~~~-------~gs~ilvTTR~~~v~~-~~---~~~~~~~~l~~L~ 294 (549)
T 2a5y_B 243 PNTLFVFDDVVQEE---------------TI--RWAQE-------LRLRCLVTTRDVEISN-AA---SQTCEFIEVTSLE 294 (549)
T ss_dssp TTEEEEEEEECCHH---------------HH--HHHHH-------TTCEEEEEESBGGGGG-GC---CSCEEEEECCCCC
T ss_pred CcEEEEEECCCCch---------------hh--ccccc-------CCCEEEEEcCCHHHHH-Hc---CCCCeEEECCCCC
Confidence 38999999998631 11 11111 3556778887543221 11 1234679999999
Q ss_pred HHHHHHHHHhhcC
Q 030960 93 RRQKRLVFQMNLS 105 (168)
Q Consensus 93 ~~~R~~il~~~l~ 105 (168)
.++-.++|.....
T Consensus 295 ~~ea~~Lf~~~a~ 307 (549)
T 2a5y_B 295 IDECYDFLEAYGM 307 (549)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987643
No 143
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=61.99 E-value=20 Score=26.27 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=31.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+ +-+......+..++..+. .. +..||.+|.+++.+
T Consensus 153 ~iAraL~~~p~lllLDEPts----------~LD~~~~~~l~~~l~~l~---~~-g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDS----------GLDIDALKVVARGVNAMR---GP-NFGALVITHYQRIL 206 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGG----------TTCHHHHHHHHHHHHHHC---ST-TCEEEEECSSSGGG
T ss_pred HHHHHHHcCCCEEEEeCCCc----------CCCHHHHHHHHHHHHHHH---hc-CCEEEEEecCHHHH
Confidence 34455567899999999543 223333344444555552 22 45577778776644
No 144
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=61.86 E-value=14 Score=27.74 Aligned_cols=56 Identities=25% Similarity=0.376 Sum_probs=32.4
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
.+..|-...|.+|++||-=+ +-+......+..++..+ ....+..||.+|.+++.+.
T Consensus 153 ~iAraL~~~P~lLlLDEPts----------~LD~~~~~~i~~~l~~l---~~~~g~tvi~vtHdl~~~~ 208 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEPTA----------GLDPMGVSEIMKLLVEM---QKELGITIIIATHDIDIVP 208 (275)
T ss_dssp HHHHHHTTCCSEEEEECTTT----------TCCHHHHHHHHHHHHHH---HHHHCCEEEEEESCCSSGG
T ss_pred HHHHHHHcCCCEEEEECccc----------cCCHHHHHHHHHHHHHH---HhhCCCEEEEEecCHHHHH
Confidence 34555677899999999332 33333334444444444 2112556788888877654
No 145
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=60.85 E-value=6.6 Score=31.33 Aligned_cols=63 Identities=17% Similarity=0.297 Sum_probs=34.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR 68 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~ 68 (168)
+...+....|.+|+||++-.++...-... +.-....+.+..++..|..+.+..++.||.++..
T Consensus 265 ~~~~l~~~~~~llVIDs~t~~~~~~~sg~-g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 265 AAQMMSESRFSLIVVDSVMALYRTDFSGR-GELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHhcCCceEEecchhhhCchhhcCc-cchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 34445567899999999988875431111 1111223444555565555544446666666664
No 146
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=59.59 E-value=58 Score=29.03 Aligned_cols=86 Identities=7% Similarity=0.145 Sum_probs=52.2
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEecCC-
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPL- 90 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~- 90 (168)
..+.+|+||+++... .+..+ .++.-||.||....-.... . .-...+.+++
T Consensus 235 ~~~~LlvlDd~~~~~-----------------------~~~~~--~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~ 285 (1249)
T 3sfz_A 235 HPRSLLILDDVWDPW-----------------------VLKAF--DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESG 285 (1249)
T ss_dssp SCSCEEEEESCCCHH-----------------------HHTTT--CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSS
T ss_pred CCCEEEEEecCCCHH-----------------------HHHhh--cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCC
Confidence 348999999998531 12222 2345688888866433211 1 2345678875
Q ss_pred CCHHHHHHHHHhhcCC-----CCCHHHHHhCCCCCCHHHHHH
Q 030960 91 PDRRQKRLVFQMNLSD-----EVDLEDYVSRPDKISAAEIAA 127 (168)
Q Consensus 91 P~~~~R~~il~~~l~~-----~~~~~~la~~t~g~s~~di~~ 127 (168)
++.++-.++|...... .....++++.+.|+ |--|+.
T Consensus 286 l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~ 326 (1249)
T 3sfz_A 286 LGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS-PLVVSL 326 (1249)
T ss_dssp CCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC-HHHHHH
T ss_pred CCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC-HHHHHH
Confidence 8888888888855432 12356788888776 444443
No 147
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=58.14 E-value=14 Score=23.13 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 125 IAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 125 i~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
+..++..|...|...+++.|+.+|+..|++..
T Consensus 54 i~~l~~~A~~~a~~~krktI~~~di~~Av~~~ 85 (97)
T 1n1j_B 54 ITELTLRAWIHTEDNKRRTLQRNDIAMAITKF 85 (97)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCccCCHHHHHHHHhcC
Confidence 34455666666666778899999999998753
No 148
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=57.98 E-value=19 Score=21.18 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 120 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 120 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
|..+-...+..+|...+-..+++.|+.+|+.-|++..
T Consensus 30 ~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 30 FTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 3455667788889888988899999999999999754
No 149
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=57.97 E-value=4.8 Score=31.21 Aligned_cols=67 Identities=21% Similarity=0.291 Sum_probs=35.1
Q ss_pred HHHHHHHH--cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC
Q 030960 4 DVFRLAKE--NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (168)
Q Consensus 4 ~iF~~a~~--~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (168)
.+...++. ..+.+|+||.+-.++...-... +........+..++..|.++....++.||.++.....
T Consensus 208 ~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~ 276 (343)
T 1v5w_A 208 YVAAKFHEEAGIFKLLIIDSIMALFRVDFSGR-GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD 276 (343)
T ss_dssp HHHHHHHHSCSSEEEEEEETSGGGHHHHCCGG-GCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC---
T ss_pred HHHHHHHhcCCCccEEEEechHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceec
Confidence 34455566 7799999999999884321100 1111111234555555554444456666666554433
No 150
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=56.70 E-value=15 Score=24.07 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 125 IAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 125 i~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
|..++..|...|-..+++.|+.+|+..|+.+
T Consensus 76 i~~L~~~A~~~a~~~krktI~~~di~~Av~~ 106 (119)
T 4g92_C 76 ITELTMRAWIHAEDNKRRTLQRSDIAAALSK 106 (119)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccCccCHHHHHHHHhc
Confidence 4556666777777778889999999999965
No 151
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=56.30 E-value=12 Score=27.84 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=31.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+ +-+......+..++..+. .. +..||.+|.+++.+
T Consensus 169 ~lAraL~~~p~lllLDEPts----------~LD~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~~~ 222 (263)
T 2olj_A 169 AIARALAMEPKIMLFDEPTS----------ALDPEMVGEVLSVMKQLA---NE-GMTMVVVTHEMGFA 222 (263)
T ss_dssp HHHHHHTTCCSEEEEESTTT----------TSCHHHHHHHHHHHHHHH---HT-TCEEEEECSCHHHH
T ss_pred HHHHHHHCCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHH---hC-CCEEEEEcCCHHHH
Confidence 34556677899999999432 333333444444555542 22 45577788776543
No 152
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=55.44 E-value=29 Score=25.73 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=27.6
Q ss_pred CCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.|.+|++||-= ++-+......+..++..+ ....+..||.+|.+.+.+
T Consensus 165 ~p~lLllDEPt----------s~LD~~~~~~i~~~l~~l---~~~~~~tvi~vtHdl~~~ 211 (266)
T 4g1u_C 165 TPRWLFLDEPT----------SALDLYHQQHTLRLLRQL---TRQEPLAVCCVLHDLNLA 211 (266)
T ss_dssp CCEEEEECCCC----------SSCCHHHHHHHHHHHHHH---HHHSSEEEEEECSCHHHH
T ss_pred CCCEEEEeCcc----------ccCCHHHHHHHHHHHHHH---HHcCCCEEEEEEcCHHHH
Confidence 89999999932 233333334444444444 233456688888876543
No 153
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=54.99 E-value=4.2 Score=31.01 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=33.8
Q ss_pred HHHHHHHH-cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecC
Q 030960 4 DVFRLAKE-NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATN 67 (168)
Q Consensus 4 ~iF~~a~~-~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn 67 (168)
.+....+. ..+.+|+||.+-.++....... +........+..++..+..+....++.||.+..
T Consensus 194 ~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq 257 (322)
T 2i1q_A 194 KIEDLIQEGNNIKLVVIDSLTSTFRNEYTGR-GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQ 257 (322)
T ss_dssp THHHHHHTTCEEEEEEEECSSHHHHHHCCCT-TSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHhhccCccEEEEECcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence 34445555 6799999999999874321111 111111234455555555444444566666543
No 154
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=54.64 E-value=20 Score=25.97 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=30.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (168)
.+..|-...|.++++||-=+ +-+......+..++..+ ....+..||.+|++++
T Consensus 155 ~iAral~~~p~llllDEPts----------~LD~~~~~~i~~~l~~l---~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 155 AIARALANNPPIILADQPTW----------ALDSKTGEKIMQLLKKL---NEEDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTT----------TSCHHHHHHHHHHHHHH---HHHHCCEEEEECSCHH
T ss_pred HHHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHH---HHHcCCEEEEEcCCHH
Confidence 34555667899999999432 33333334444444444 2222456788888764
No 155
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=54.19 E-value=27 Score=25.04 Aligned_cols=52 Identities=19% Similarity=0.415 Sum_probs=29.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (168)
.+..|-...|.++++||--+ +-+......+..++..+. .. +..||.+|.+++
T Consensus 150 ~laral~~~p~lllLDEPt~----------~LD~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~ 201 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTG----------NLDSANTKRVMDIFLKIN---EG-GTSIVMVTHERE 201 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTT----------TCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCHH
T ss_pred HHHHHHHcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH---HC-CCEEEEEcCCHH
Confidence 34455567799999999432 233333344444554442 22 445777777644
No 156
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=54.08 E-value=35 Score=25.07 Aligned_cols=55 Identities=24% Similarity=0.381 Sum_probs=31.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+ +-+......+..++..+. ...+..||.+|.+++.+
T Consensus 138 ~lAraL~~~p~lllLDEPts----------~LD~~~~~~l~~~l~~l~---~~~g~tvi~vtHd~~~~ 192 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTS----------ALDLANQDIVLSLLIDLA---QSQNMTVVFTTHQPNQV 192 (253)
T ss_dssp HHHHHHHTTCSEEEESSSST----------TSCHHHHHHHHHHHHHHH---HTSCCEEEEEESCHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 34556677899999999443 233333344444544442 22244567777766543
No 157
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=52.97 E-value=4.9 Score=30.08 Aligned_cols=21 Identities=10% Similarity=0.276 Sum_probs=13.8
Q ss_pred HHHHHcCCeEEEEcccccccc
Q 030960 7 RLAKENAPAIIFIDEVDAIAT 27 (168)
Q Consensus 7 ~~a~~~~p~ii~iDe~D~l~~ 27 (168)
..+..+.|.+|+|||.-.+..
T Consensus 141 a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 141 YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHTTCCSEEEEEEEC----
T ss_pred HHHHhcCCCEEEEcCccccCC
Confidence 334567899999999998763
No 158
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=52.51 E-value=18 Score=26.78 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=31.1
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||--+ +-+......+..++..+. .. +..||.+|.+++.+
T Consensus 156 ~lAraL~~~p~lllLDEPts----------~LD~~~~~~l~~~l~~l~---~~-g~tiiivtHd~~~~ 209 (256)
T 1vpl_A 156 LIARALMVNPRLAILDEPTS----------GLDVLNAREVRKILKQAS---QE-GLTILVSSHNMLEV 209 (256)
T ss_dssp HHHHHHTTCCSEEEEESTTT----------TCCHHHHHHHHHHHHHHH---HT-TCEEEEEECCHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcc----------ccCHHHHHHHHHHHHHHH---hC-CCEEEEEcCCHHHH
Confidence 34555667799999999432 333333444445555542 22 44567777765543
No 159
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=52.41 E-value=27 Score=23.18 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 125 IAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 125 i~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
|..+...|...|...+++.|+.+|+..|++..
T Consensus 45 I~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 45 AIFVTSSSTALAHKQNHKTITAKDILQTLTEL 76 (128)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 45566667777778888999999999999864
No 160
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=50.85 E-value=31 Score=25.44 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=31.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.|+++||--+ +-+......+..++..+. .. +..||.+|.+++.+
T Consensus 163 ~lAraL~~~p~lllLDEPts----------~LD~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~~~ 216 (262)
T 1b0u_A 163 SIARALAMEPDVLLFDEPTS----------ALDPELVGEVLRIMQQLA---EE-GKTMVVVTHEMGFA 216 (262)
T ss_dssp HHHHHHHTCCSEEEEESTTT----------TSCHHHHHHHHHHHHHHH---HT-TCCEEEECSCHHHH
T ss_pred HHHHHHhcCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHH
Confidence 45566677899999999432 333333444445555552 22 34477777775543
No 161
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=50.51 E-value=15 Score=28.83 Aligned_cols=57 Identities=16% Similarity=0.286 Sum_probs=31.6
Q ss_pred HHcCCeEEEEcccccccccc-cCCC-CCcc-hHHHHHHHHHHHhccCCCCCCCeEEEEec
Q 030960 10 KENAPAIIFIDEVDAIATAR-FDAQ-TGAD-REVQRILMELLNQMDGFDQTVNVKVIMAT 66 (168)
Q Consensus 10 ~~~~p~ii~iDe~D~l~~~~-~~~~-~~~~-~~~~~~~~~ll~~l~~~~~~~~v~vi~tt 66 (168)
+...|.+++||.+-.+++.. -... .... ....+.+.+++..|.++....++.||.+.
T Consensus 136 ~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~in 195 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTN 195 (356)
T ss_dssp HTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEE
T ss_pred hhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34679999999999988621 1111 1111 12235566666666555444455555543
No 162
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=49.79 E-value=20 Score=25.79 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=29.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
+..|-...|.++++||--+-+ +......+..++..+. +. +..||.+|.+++.+.
T Consensus 144 laraL~~~p~lllLDEPts~L----------D~~~~~~l~~~l~~~~---~~-g~tiiivtHd~~~~~ 197 (214)
T 1sgw_A 144 LASTLLVNAEIYVLDDPVVAI----------DEDSKHKVLKSILEIL---KE-KGIVIISSREELSYC 197 (214)
T ss_dssp HHHHTTSCCSEEEEESTTTTS----------CTTTHHHHHHHHHHHH---HH-HSEEEEEESSCCTTS
T ss_pred HHHHHHhCCCEEEEECCCcCC----------CHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHHH
Confidence 344556679999999955432 1111233333444432 12 344677777776553
No 163
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=47.71 E-value=10 Score=29.39 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=29.7
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
..|.+|+||++-+++....... +.-......+..++..|..+.+..++.||.++......
T Consensus 230 ~~~~llIlDs~ta~ld~~~~~~-~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~ 289 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRSEYIGR-GALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARP 289 (349)
T ss_dssp SCEEEEEEETSSTTHHHHCCST-TTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---
T ss_pred CCCCEEEEeCchHhhhhhhccc-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccccc
Confidence 5799999999998874321111 11111112334444444433333456677766655444
No 164
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=47.63 E-value=10 Score=26.26 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=10.1
Q ss_pred CeEEEEccccccc
Q 030960 14 PAIIFIDEVDAIA 26 (168)
Q Consensus 14 p~ii~iDe~D~l~ 26 (168)
+.+|+|||++...
T Consensus 116 ~~~lilDei~~~~ 128 (202)
T 2w58_A 116 VPVLMLDDLGAEA 128 (202)
T ss_dssp SSEEEEEEECCC-
T ss_pred CCEEEEcCCCCCc
Confidence 5799999997653
No 165
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=47.28 E-value=53 Score=25.38 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=13.6
Q ss_pred HHHcC-CeEEEEccccccc
Q 030960 9 AKENA-PAIIFIDEVDAIA 26 (168)
Q Consensus 9 a~~~~-p~ii~iDe~D~l~ 26 (168)
+-... |.++++||.++-+
T Consensus 300 ~l~~~~~~~lllDEp~~~L 318 (371)
T 3auy_A 300 ALIGNRVECIILDEPTVYL 318 (371)
T ss_dssp HHHSSCCSEEEEESTTTTC
T ss_pred HHhcCCCCeEEEeCCCCcC
Confidence 33567 9999999988643
No 166
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=44.08 E-value=53 Score=33.53 Aligned_cols=116 Identities=13% Similarity=0.155 Sum_probs=69.3
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHH----hc---------c-C--CCCCCCeEEEEec
Q 030960 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLN----QM---------D-G--FDQTVNVKVIMAT 66 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~----~l---------~-~--~~~~~~v~vi~tt 66 (168)
..+|.-+-+. .+...|||++.+- ....+++.+.+. .+ . | +.-.++..+|+|.
T Consensus 647 g~i~~G~~~~-GaW~cfDEfNrl~-----------~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTm 714 (3245)
T 3vkg_A 647 SRIFVGLCQC-GAWGCFDEFNRLE-----------ERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTM 714 (3245)
T ss_dssp HHHHHHHHHH-TCEEEEETTTSSC-----------HHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECB
T ss_pred HHHHhhHhhc-CcEEEehhhhcCC-----------HHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEe
Confidence 4566666554 5888899998762 112233222222 11 1 1 1223457788888
Q ss_pred C----CCCCCCccccCCCCcceEEecCCCCHHHHHHHHHhhcCCCCCHHHHHh---------------CCC-CCCHHHHH
Q 030960 67 N----RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQMNLSDEVDLEDYVS---------------RPD-KISAAEIA 126 (168)
Q Consensus 67 n----~~~~ld~al~r~grf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~la~---------------~t~-g~s~~di~ 126 (168)
| ....||++++. ||- .+.+..||.+...+|+-...+- .+-..+|. ..+ -|.-+-|+
T Consensus 715 NpgY~gr~eLP~nLk~--lFr-~v~m~~Pd~~~i~ei~L~s~Gf-~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalK 790 (3245)
T 3vkg_A 715 NPGYAGRSNLPDNLKK--LFR-SMAMIKPDREMIAQVMLYSQGF-KTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALK 790 (3245)
T ss_dssp CCCGGGCCCSCHHHHT--TEE-EEECCSCCHHHHHHHHHHTTTC-SCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHH
T ss_pred CCCccCcccChHHHHh--hcE-EEEEeCCCHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHH
Confidence 8 35689999998 884 5999999999999997644331 11122221 111 36778888
Q ss_pred HHHHHHHH
Q 030960 127 AICQEAGM 134 (168)
Q Consensus 127 ~l~~~a~~ 134 (168)
+++..|..
T Consensus 791 sVL~~AG~ 798 (3245)
T 3vkg_A 791 SVLVSAGG 798 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776643
No 167
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=43.45 E-value=36 Score=26.73 Aligned_cols=54 Identities=19% Similarity=0.455 Sum_probs=31.5
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
+..|-...|.||++||-=+ +-+......+..++..+ ....+..||.+|.+.+.+
T Consensus 174 IArAL~~~P~lLLlDEPTs----------~LD~~~~~~i~~lL~~l---~~~~g~Tii~vTHdl~~~ 227 (366)
T 3tui_C 174 IARALASNPKVLLCDQATS----------ALDPATTRSILELLKDI---NRRLGLTILLITHEMDVV 227 (366)
T ss_dssp HHHHTTTCCSEEEEESTTT----------TSCHHHHHHHHHHHHHH---HHHSCCEEEEEESCHHHH
T ss_pred HHHHHhcCCCEEEEECCCc----------cCCHHHHHHHHHHHHHH---HHhCCCEEEEEecCHHHH
Confidence 4455567799999999432 33333334444444444 233356678888876543
No 168
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=43.44 E-value=17 Score=25.42 Aligned_cols=13 Identities=23% Similarity=0.348 Sum_probs=11.3
Q ss_pred CeEEEEccccccc
Q 030960 14 PAIIFIDEVDAIA 26 (168)
Q Consensus 14 p~ii~iDe~D~l~ 26 (168)
-.+|++||+|.+.
T Consensus 159 ~~~lViDEah~~~ 171 (220)
T 1t6n_A 159 IKHFILDECDKML 171 (220)
T ss_dssp CCEEEEESHHHHH
T ss_pred CCEEEEcCHHHHh
Confidence 5789999999886
No 169
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=43.30 E-value=60 Score=23.44 Aligned_cols=53 Identities=15% Similarity=0.295 Sum_probs=29.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (168)
.+..|-...|.++++||--+ +-+......+..++..+. .. +..+|.+|++++.
T Consensus 149 ~lAraL~~~p~lllLDEPts----------~LD~~~~~~l~~~l~~~~---~~-g~tvi~vtHd~~~ 201 (240)
T 1ji0_A 149 AIGRALMSRPKLLMMDEPSL----------GLAPILVSEVFEVIQKIN---QE-GTTILLVEQNALG 201 (240)
T ss_dssp HHHHHHTTCCSEEEEECTTT----------TCCHHHHHHHHHHHHHHH---HT-TCCEEEEESCHHH
T ss_pred HHHHHHHcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHH
Confidence 34555667899999999443 333333344444555442 12 3346667776543
No 170
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=42.65 E-value=46 Score=21.94 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcC
Q 030960 119 KISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158 (168)
Q Consensus 119 g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 158 (168)
.|...=.+.+..+|...+....+..|+..+++.|++-..|
T Consensus 62 SfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLp 101 (123)
T 2nqb_D 62 SFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLP 101 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCc
Confidence 3444445667888888888888899999999999988877
No 171
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=42.09 E-value=77 Score=26.22 Aligned_cols=61 Identities=20% Similarity=0.345 Sum_probs=33.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceE
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRK 85 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~ 85 (168)
...|-...|.|+++||.-+ +-+...+..+...+..+. + +..+|.+|++++.+ + ..|+.
T Consensus 491 iAral~~~p~illlDEpts----------~LD~~~~~~i~~~l~~~~---~--~~tvi~itH~~~~~-----~--~~d~i 548 (582)
T 3b60_A 491 IARALLRDSPILILDEATS----------ALDTESERAIQAALDELQ---K--NRTSLVIAHRLSTI-----E--QADEI 548 (582)
T ss_dssp HHHHHHHCCSEEEEETTTS----------SCCHHHHHHHHHHHHHHH---T--TSEEEEECSCGGGT-----T--TCSEE
T ss_pred HHHHHHhCCCEEEEECccc----------cCCHHHHHHHHHHHHHHh---C--CCEEEEEeccHHHH-----H--hCCEE
Confidence 4445566799999999553 223333344444444442 1 33467777776543 2 45555
Q ss_pred Eec
Q 030960 86 IEF 88 (168)
Q Consensus 86 i~~ 88 (168)
+.+
T Consensus 549 ~~l 551 (582)
T 3b60_A 549 VVV 551 (582)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 172
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=41.71 E-value=13 Score=29.07 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=29.7
Q ss_pred HHcCCeEEEEcccccccccccCC-CCCcc--hHHHHHHHHHHHhccCCCCCCCeEEEEecCCC
Q 030960 10 KENAPAIIFIDEVDAIATARFDA-QTGAD--REVQRILMELLNQMDGFDQTVNVKVIMATNRA 69 (168)
Q Consensus 10 ~~~~p~ii~iDe~D~l~~~~~~~-~~~~~--~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~ 69 (168)
+...+.+|+||.+-.+.....-. ..+.. ....+.+..++..|..+.+..++.||+++...
T Consensus 138 ~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 200 (356)
T ss_dssp HHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--
T ss_pred hccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 45679999999999998532110 00010 01113444455555433334456666654433
No 173
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=41.63 E-value=49 Score=21.91 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcC
Q 030960 119 KISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 158 (168)
Q Consensus 119 g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 158 (168)
.|...=.+.+..+|...+....+..|+..+++.|++-..|
T Consensus 65 SfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLp 104 (126)
T 1tzy_B 65 SFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLP 104 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCc
Confidence 3444445668888888888888899999999999988877
No 174
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=40.39 E-value=10 Score=30.49 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.0
Q ss_pred HcCCeEEEEccccccccc
Q 030960 11 ENAPAIIFIDEVDAIATA 28 (168)
Q Consensus 11 ~~~p~ii~iDe~D~l~~~ 28 (168)
.+.|.+|+||++-.+...
T Consensus 311 ~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 311 ESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp TTCCCEEEEECGGGSCCS
T ss_pred HcCCCEEEEccHHHhccC
Confidence 467999999999998743
No 175
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=39.92 E-value=27 Score=24.92 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=39.0
Q ss_pred HHHHHHH----cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCC
Q 030960 5 VFRLAKE----NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (168)
Q Consensus 5 iF~~a~~----~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (168)
.++.++. ....+|++||+=....-. --+ ...++..+. ....+.-||.|+|.+ |++++.
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g-----~l~------~~ev~~~l~--~Rp~~~~vIlTGr~a---p~~l~e-- 169 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYD-----YLP------LEEVISALN--ARPGHQTVIITGRGC---HRDILD-- 169 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTT-----SSC------HHHHHHHHH--TSCTTCEEEEECSSC---CHHHHH--
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCC-----CCC------HHHHHHHHH--hCcCCCEEEEECCCC---cHHHHH--
Confidence 4444443 348999999985432111 000 112444554 344466788888875 677776
Q ss_pred CcceEEecC
Q 030960 81 RLDRKIEFP 89 (168)
Q Consensus 81 rf~~~i~~~ 89 (168)
..|.+-++.
T Consensus 170 ~AD~VTem~ 178 (196)
T 1g5t_A 170 LADTVSELR 178 (196)
T ss_dssp HCSEEEECC
T ss_pred hCcceeeec
Confidence 777776664
No 176
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=39.91 E-value=44 Score=24.95 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=29.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEE--EEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKV--IMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~v--i~ttn~~~~l 72 (168)
.+..|-...|.++++||-=+ +-+......+..++..+. .. +..| |.+|.+.+.+
T Consensus 171 ~lAraL~~~p~lLlLDEPts----------~LD~~~~~~l~~~l~~l~---~~-g~tv~~iivtHd~~~~ 226 (279)
T 2ihy_A 171 MIARALMGQPQVLILDEPAA----------GLDFIARESLLSILDSLS---DS-YPTLAMIYVTHFIEEI 226 (279)
T ss_dssp HHHHHHHTCCSEEEEESTTT----------TCCHHHHHHHHHHHHHHH---HH-CTTCEEEEEESCGGGC
T ss_pred HHHHHHhCCCCEEEEeCCcc----------ccCHHHHHHHHHHHHHHH---HC-CCEEEEEEEecCHHHH
Confidence 34556677899999999432 333333344444544442 11 2224 6677776544
No 177
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=39.86 E-value=59 Score=24.74 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=12.1
Q ss_pred HHHHcCCeEEEEccccc
Q 030960 8 LAKENAPAIIFIDEVDA 24 (168)
Q Consensus 8 ~a~~~~p~ii~iDe~D~ 24 (168)
.|-...|.++++||--+
T Consensus 267 ~~l~~~p~~lllDEp~~ 283 (339)
T 3qkt_A 267 LYLAGEISLLILDEPTP 283 (339)
T ss_dssp HHTTTTTCEEEEECCCT
T ss_pred HHhcCCCCEEEEECCCC
Confidence 33345799999999553
No 178
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=39.04 E-value=59 Score=25.26 Aligned_cols=46 Identities=22% Similarity=0.245 Sum_probs=26.5
Q ss_pred HHcCC--eEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC
Q 030960 10 KENAP--AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (168)
Q Consensus 10 ~~~~p--~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (168)
-...| .||++||.++=+ +......+..++..+. + +.-||.+|.+++
T Consensus 310 l~~~~~~~~LlLDEpt~~L----------D~~~~~~l~~~L~~l~---~--~~~vi~itH~~~ 357 (415)
T 4aby_A 310 TVLGADTPSVVFDEVDAGI----------GGAAAIAVAEQLSRLA---D--TRQVLVVTHLAQ 357 (415)
T ss_dssp HHHCCSSSEEEESSTTTTC----------CHHHHHHHHHHHHHHT---T--TSEEEEECSCHH
T ss_pred HHhCCCCCEEEEECCCCCC----------CHHHHHHHHHHHHHHh---C--CCEEEEEeCcHH
Confidence 34567 999999988643 2223344444555542 1 344666777654
No 179
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=38.51 E-value=49 Score=23.28 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=19.7
Q ss_pred HHHHHHHHHcCCeEEEEcccccccc
Q 030960 3 RDVFRLAKENAPAIIFIDEVDAIAT 27 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe~D~l~~ 27 (168)
..+-...+...|.++++|.+..+..
T Consensus 125 ~~~~~~~~~~~~~~vviD~~~~l~~ 149 (251)
T 2zts_A 125 RYIYRVVKAINAKRLVIDSIPSIAL 149 (251)
T ss_dssp HHHHHHHHHTTCSEEEEECHHHHHH
T ss_pred HHHHHHHHhcCCcEEEEEcHHHHhh
Confidence 4455666788899999999998864
No 180
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=38.51 E-value=41 Score=23.07 Aligned_cols=32 Identities=3% Similarity=-0.037 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 124 EIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 124 di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
-+..+..+|...|-+.+++.|+.+|+..|+..
T Consensus 38 f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~ 69 (154)
T 1f1e_A 38 MAEYVANAAKSVLDASGKKTLMEEHLKALADV 69 (154)
T ss_dssp HHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 35556777888888889999999999999965
No 181
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=38.20 E-value=52 Score=24.26 Aligned_cols=36 Identities=6% Similarity=0.053 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 122 AAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 122 ~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
-.-+++++++|...+-..+++.|+.+|+.-|++...
T Consensus 192 e~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 192 KSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 345667778888888888899999999999998753
No 182
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=38.12 E-value=52 Score=25.01 Aligned_cols=53 Identities=23% Similarity=0.332 Sum_probs=28.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.|+++||-=+ +-+......+...+..+. .. ..+|.+|.+++.+
T Consensus 200 aiARAL~~~p~iLlLDEPts----------~LD~~~~~~i~~~l~~l~---~~--~Tvi~itH~l~~~ 252 (306)
T 3nh6_A 200 AIARTILKAPGIILLDEATS----------ALDTSNERAIQASLAKVC---AN--RTTIVVAHRLSTV 252 (306)
T ss_dssp HHHHHHHHCCSEEEEECCSS----------CCCHHHHHHHHHHHHHHH---TT--SEEEEECCSHHHH
T ss_pred HHHHHHHhCCCEEEEECCcc----------cCCHHHHHHHHHHHHHHc---CC--CEEEEEEcChHHH
Confidence 34455566799999999543 223333344444444442 11 2456677766543
No 183
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=37.74 E-value=62 Score=22.69 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=17.4
Q ss_pred HHHHHHHHcCCeEEEEccccccc
Q 030960 4 DVFRLAKENAPAIIFIDEVDAIA 26 (168)
Q Consensus 4 ~iF~~a~~~~p~ii~iDe~D~l~ 26 (168)
.+-+..+...|.+|+||++..+.
T Consensus 119 ~i~~~~~~~~~~~vviD~~~~l~ 141 (247)
T 2dr3_A 119 VLRQAIRDINAKRVVVDSVTTLY 141 (247)
T ss_dssp HHHHHHHHHTCCEEEEETSGGGT
T ss_pred HHHHHHHHhCCCEEEECCchHhh
Confidence 33444456789999999999886
No 184
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=37.25 E-value=24 Score=22.32 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=16.5
Q ss_pred HHHHHcCCeEEEEccccccc
Q 030960 7 RLAKENAPAIIFIDEVDAIA 26 (168)
Q Consensus 7 ~~a~~~~p~ii~iDe~D~l~ 26 (168)
+.++.++|.|+++|+=..+.
T Consensus 70 ~e~~~~~P~vV~vd~~N~i~ 89 (97)
T 1uhe_A 70 DEINAHKPSIVLVDEKNEIL 89 (97)
T ss_dssp HHHHHCCCEEEEECTTSCEE
T ss_pred HHHhcCCCEEEEECCCCCEE
Confidence 56789999999999966654
No 185
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=36.92 E-value=20 Score=26.08 Aligned_cols=10 Identities=10% Similarity=0.464 Sum_probs=8.3
Q ss_pred CeEEEEcccc
Q 030960 14 PAIIFIDEVD 23 (168)
Q Consensus 14 p~ii~iDe~D 23 (168)
..||+|||+|
T Consensus 104 ~kIiiLDEad 113 (212)
T 1tue_A 104 TKVAMLDDAT 113 (212)
T ss_dssp CSSEEEEEEC
T ss_pred CCEEEEECCC
Confidence 4588999998
No 186
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=36.59 E-value=54 Score=23.22 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhcCC
Q 030960 121 SAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 159 (168)
Q Consensus 121 s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~ 159 (168)
...=++.++.+|...+....+..+|..|++.|++-..|.
T Consensus 34 v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpg 72 (192)
T 2jss_A 34 VNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPG 72 (192)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH
Confidence 334455677777777766677889999999999877764
No 187
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=36.12 E-value=1.2e+02 Score=24.93 Aligned_cols=52 Identities=23% Similarity=0.384 Sum_probs=29.5
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
...|-...|.|+++||.=+- -+...+..+...+..+. +. ..+|..|++++.+
T Consensus 488 lAral~~~p~illlDEpts~----------LD~~~~~~i~~~l~~~~---~~--~t~i~itH~l~~~ 539 (578)
T 4a82_A 488 IARIFLNNPPILILDEATSA----------LDLESESIIQEALDVLS---KD--RTTLIVAHRLSTI 539 (578)
T ss_dssp HHHHHHHCCSEEEEESTTTT----------CCHHHHHHHHHHHHHHT---TT--SEEEEECSSGGGT
T ss_pred HHHHHHcCCCEEEEECcccc----------CCHHHHHHHHHHHHHHc---CC--CEEEEEecCHHHH
Confidence 34455667999999995432 22333344445555442 22 2466677877644
No 188
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=36.07 E-value=63 Score=22.75 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 125 IAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 125 i~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
|..+...|...|...+++.|+.+|+..|++..
T Consensus 50 I~~LtseA~e~a~~~~RKTI~~eDVl~Al~~L 81 (179)
T 1jfi_B 50 IHLISSEANEICNKSEKKTISPEHVIQALESL 81 (179)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhc
Confidence 44455556677777888999999999999853
No 189
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=36.04 E-value=27 Score=25.51 Aligned_cols=54 Identities=20% Similarity=0.288 Sum_probs=29.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (168)
.+..|-...|.++++||--+ +-+......+..++..+. ...+..||.+|++++.
T Consensus 136 ~lAral~~~p~lllLDEPts----------~LD~~~~~~~~~~l~~l~---~~~g~tvi~vtHd~~~ 189 (240)
T 2onk_A 136 ALARALVIQPRLLLLDEPLS----------AVDLKTKGVLMEELRFVQ---REFDVPILHVTHDLIE 189 (240)
T ss_dssp HHHHHHTTCCSSBEEESTTS----------SCCHHHHHHHHHHHHHHH---HHHTCCEEEEESCHHH
T ss_pred HHHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH
Confidence 34555567799999999432 333333344444544442 1213346677776553
No 190
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=35.66 E-value=55 Score=25.50 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=30.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||==+ +-+......+..++..+ ....+..+|.+|.+.+.+
T Consensus 155 alArAL~~~P~lLLLDEP~s----------~LD~~~r~~l~~~l~~l---~~~~g~tvi~vTHd~~~a 209 (355)
T 1z47_A 155 ALARALAPRPQVLLFDEPFA----------AIDTQIRRELRTFVRQV---HDEMGVTSVFVTHDQEEA 209 (355)
T ss_dssp HHHHHHTTCCSEEEEESTTC----------CSSHHHHHHHHHHHHHH---HHHHTCEEEEECSCHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEECCCHHHH
Confidence 34555567899999999332 23333333333444443 222245577788776543
No 191
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=35.61 E-value=57 Score=25.53 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=30.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (168)
.+..|-...|.++++||==+ +-+......+..++..+ .+..+..+|.+|++.+.
T Consensus 149 alArAL~~~P~lLLLDEP~s----------~LD~~~r~~l~~~l~~l---~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLS----------NLDAKLRVRMRAELKKL---QRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTT----------TSCHHHHHHHHHHHHHH---HHHHTCEEEEEESCHHH
T ss_pred HHHHHHhcCCCEEEECCCCc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEECCCHHH
Confidence 45566677899999999332 23333333333444443 22224557777777554
No 192
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=35.30 E-value=59 Score=25.22 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=29.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (168)
+..|-...|.++++||-=+ +-+......+..++..+ .+..+..+|.+|.+.+.
T Consensus 138 lAraL~~~P~lLLLDEP~s----------~LD~~~~~~l~~~l~~l---~~~~g~tii~vTHd~~~ 190 (348)
T 3d31_A 138 LARALVTNPKILLLDEPLS----------ALDPRTQENAREMLSVL---HKKNKLTVLHITHDQTE 190 (348)
T ss_dssp HHHHTTSCCSEEEEESSST----------TSCHHHHHHHHHHHHHH---HHHTTCEEEEEESCHHH
T ss_pred HHHHHHcCCCEEEEECccc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHH
Confidence 4455566799999999332 33333334444444444 22224557777777553
No 193
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=34.76 E-value=27 Score=22.24 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=16.0
Q ss_pred HHHHHcCCeEEEEccccccc
Q 030960 7 RLAKENAPAIIFIDEVDAIA 26 (168)
Q Consensus 7 ~~a~~~~p~ii~iDe~D~l~ 26 (168)
+.|+.++|.|+++|+=..+.
T Consensus 71 ~e~~~~~P~vv~vd~~N~i~ 90 (102)
T 3plx_B 71 EEAKTFKPKVVFVDENNTAT 90 (102)
T ss_dssp HHHHHCCCEEEEECTTSCEE
T ss_pred HHHhcCCCEEEEECCCCcEE
Confidence 56788999999999954454
No 194
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=34.22 E-value=25 Score=26.35 Aligned_cols=13 Identities=23% Similarity=0.486 Sum_probs=11.5
Q ss_pred CeEEEEccccccc
Q 030960 14 PAIIFIDEVDAIA 26 (168)
Q Consensus 14 p~ii~iDe~D~l~ 26 (168)
-.+|+|||+|.++
T Consensus 236 l~~lVlDEad~l~ 248 (300)
T 3fmo_B 236 IKVFVLDEADVMI 248 (300)
T ss_dssp CSEEEETTHHHHH
T ss_pred ceEEEEeCHHHHh
Confidence 5789999999987
No 195
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=34.18 E-value=36 Score=22.93 Aligned_cols=31 Identities=3% Similarity=-0.024 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHH-HHhCCCccCHHHHHHHHHh
Q 030960 125 IAAICQEAGMHA-VRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 125 i~~l~~~a~~~a-~~~~~~~i~~~d~~~al~~ 155 (168)
|..|+..|...| ...+++.|+..|+..|+..
T Consensus 54 I~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~ 85 (140)
T 2byk_A 54 VRHLAGAAYTEEFGQRPGEALKYEHLSQVVNK 85 (140)
T ss_dssp HHHHHHHHHHHHHTTCCSCEECHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCcccCHHHHHHHHhc
Confidence 344566666666 5666788999999999974
No 196
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=34.07 E-value=77 Score=26.21 Aligned_cols=52 Identities=21% Similarity=0.387 Sum_probs=28.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
...|-...|.|+++||.-+- -+...+..+...+..+. + +..+|.+|++++.+
T Consensus 491 iAral~~~p~illlDEpts~----------LD~~~~~~i~~~l~~~~---~--~~tvi~itH~~~~~ 542 (582)
T 3b5x_A 491 IARALLRDAPVLILDEATSA----------LDTESERAIQAALDELQ---K--NKTVLVIAHRLSTI 542 (582)
T ss_pred HHHHHHcCCCEEEEECcccc----------CCHHHHHHHHHHHHHHc---C--CCEEEEEecCHHHH
Confidence 34455667999999995432 22333333444444442 2 33466677776543
No 197
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=33.77 E-value=35 Score=26.54 Aligned_cols=56 Identities=14% Similarity=0.262 Sum_probs=30.2
Q ss_pred HHcCCeEEEEcccccccccccCCCC-Cc-c---hHHHHHHHHHHHhccCCCCCCCeEEEEe
Q 030960 10 KENAPAIIFIDEVDAIATARFDAQT-GA-D---REVQRILMELLNQMDGFDQTVNVKVIMA 65 (168)
Q Consensus 10 ~~~~p~ii~iDe~D~l~~~~~~~~~-~~-~---~~~~~~~~~ll~~l~~~~~~~~v~vi~t 65 (168)
+...|.+|+||-+-.+++...-... +. + -...+.++.+|..|.++.+..++.+|.+
T Consensus 108 ~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 108 ERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp CTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 4457999999999999853211111 10 0 0123556666666554444456655554
No 198
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=33.19 E-value=62 Score=25.24 Aligned_cols=54 Identities=15% Similarity=0.294 Sum_probs=29.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (168)
.+..|-...|.++++||-=+ +-+......+..++..+ .+..+..+|.+|++.+.
T Consensus 143 alArAL~~~P~lLLLDEP~s----------~LD~~~r~~l~~~l~~l---~~~~g~tvi~vTHd~~~ 196 (359)
T 2yyz_A 143 ALARALVKQPKVLLFDEPLS----------NLDANLRMIMRAEIKHL---QQELGITSVYVTHDQAE 196 (359)
T ss_dssp HHHHHHTTCCSEEEEESTTT----------TSCHHHHHHHHHHHHHH---HHHHCCEEEEEESCHHH
T ss_pred HHHHHHHcCCCEEEEECCcc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEcCCHHH
Confidence 34555677899999999332 23333333344444443 22224557777777654
No 199
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=32.99 E-value=37 Score=26.56 Aligned_cols=53 Identities=13% Similarity=0.305 Sum_probs=29.4
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHH-HHHHHHHHhccCCCCCCCeEEEEecCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQ-RILMELLNQMDGFDQTVNVKVIMATNRADT 71 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~-~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (168)
.+..|-...|.++++||==+ +-+.... .+...+..... ..+..+|.+|.+.+.
T Consensus 148 alArAL~~~P~lLLLDEPts----------~LD~~~r~~l~~~l~~~~~----~~g~tvi~vTHd~~e 201 (359)
T 3fvq_A 148 ALARALAPDPELILLDEPFS----------ALDEQLRRQIREDMIAALR----ANGKSAVFVSHDREE 201 (359)
T ss_dssp HHHHHHTTCCSEEEEESTTT----------TSCHHHHHHHHHHHHHHHH----HTTCEEEEECCCHHH
T ss_pred HHHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHH
Confidence 34556677899999999332 2233222 23233333332 235567888887654
No 200
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=32.90 E-value=62 Score=25.37 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=30.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (168)
.+..|-...|.++++||-=+ +-+......+..++..+ .+..+..+|.+|++.+.
T Consensus 151 alArAL~~~P~lLLLDEP~s----------~LD~~~r~~l~~~l~~l---~~~~g~tvi~vTHd~~~ 204 (372)
T 1v43_A 151 AVARAIVVEPDVLLMDEPLS----------NLDAKLRVAMRAEIKKL---QQKLKVTTIYVTHDQVE 204 (372)
T ss_dssp HHHHHHTTCCSEEEEESTTT----------TSCHHHHHHHHHHHHHH---HHHHTCEEEEEESCHHH
T ss_pred HHHHHHhcCCCEEEEcCCCc----------cCCHHHHHHHHHHHHHH---HHhCCCEEEEEeCCHHH
Confidence 34555677899999999432 23333333333344443 22224557777877654
No 201
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=32.27 E-value=9.8 Score=27.17 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=11.6
Q ss_pred CeEEEEcccccccc
Q 030960 14 PAIIFIDEVDAIAT 27 (168)
Q Consensus 14 p~ii~iDe~D~l~~ 27 (168)
-.+|++||+|.+..
T Consensus 167 ~~~lViDEah~~~~ 180 (230)
T 2oxc_A 167 IRLFILDEADKLLE 180 (230)
T ss_dssp CCEEEESSHHHHHS
T ss_pred CCEEEeCCchHhhc
Confidence 46899999999863
No 202
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=32.08 E-value=23 Score=26.80 Aligned_cols=13 Identities=15% Similarity=0.468 Sum_probs=9.8
Q ss_pred CCeEEEEcccccc
Q 030960 13 APAIIFIDEVDAI 25 (168)
Q Consensus 13 ~p~ii~iDe~D~l 25 (168)
.+.+|+|||++..
T Consensus 214 ~~~lLiiDdig~~ 226 (308)
T 2qgz_A 214 NVPVLILDDIGAE 226 (308)
T ss_dssp TSSEEEEETCCC-
T ss_pred CCCEEEEcCCCCC
Confidence 3679999999754
No 203
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=31.90 E-value=20 Score=22.49 Aligned_cols=29 Identities=7% Similarity=0.095 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 127 AICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 127 ~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
.++..|...+...+++.|+.+|+..|++.
T Consensus 48 el~~~A~~~a~~~krktI~~~di~~av~~ 76 (98)
T 1jfi_A 48 SLLKKACQVTQSRNAKTMTTSHLKQCIEL 76 (98)
T ss_dssp HHHHHHHHHHHTC---CBCHHHHHTTCC-
T ss_pred HHHHHHHHHHHHcCCCeecHHHHHHHHhc
Confidence 34455555555556778999999988765
No 204
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=31.84 E-value=29 Score=21.55 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=13.0
Q ss_pred HHHHHHHHcCCeEEEEcc
Q 030960 4 DVFRLAKENAPAIIFIDE 21 (168)
Q Consensus 4 ~iF~~a~~~~p~ii~iDe 21 (168)
+.++..+...|.+|++|-
T Consensus 42 ~a~~~l~~~~~dlvi~d~ 59 (130)
T 3eod_A 42 DALELLGGFTPDLMICDI 59 (130)
T ss_dssp HHHHHHTTCCCSEEEECC
T ss_pred HHHHHHhcCCCCEEEEec
Confidence 455666677788888874
No 205
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=31.80 E-value=1.1e+02 Score=24.90 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 4 ~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+.......+|-+|+||+.-.+.+. .+.+......+..++..+. . .++.+|.+|.+.+.+
T Consensus 129 ~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l~~ll~~l~---~-~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 129 RINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRRELFRLVARLK---Q-IGATTVMTTERIEEY 188 (525)
T ss_dssp HHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHHHHHHHHHH---H-HTCEEEEEEECSSSS
T ss_pred HHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHHHHHHHHHH---H-CCCEEEEEecCCCCc
Confidence 3444445567999999999876543 1223333445555655553 2 256688888888775
No 206
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=31.62 E-value=54 Score=25.46 Aligned_cols=54 Identities=13% Similarity=0.274 Sum_probs=28.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (168)
.+..|-...|.++++||==+- -+......+..++..+ .+..+..+|.+|++.+.
T Consensus 150 alAraL~~~P~lLLLDEP~s~----------LD~~~r~~l~~~l~~l---~~~~g~tvi~vTHd~~~ 203 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSN----------LDARMRDSARALVKEV---QSRLGVTLLVVSHDPAD 203 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTT----------SCGGGHHHHHHHHHHH---HHHHCCEEEEEESCHHH
T ss_pred HHHHHHHhCCCEEEEECCccc----------CCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHH
Confidence 345556678999999994322 2222223333333333 12224557777777654
No 207
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=31.03 E-value=1.6e+02 Score=22.03 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=24.4
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (168)
..|.++++||..+-+ +......+..++..+. . +.-+|.+|.+++
T Consensus 240 ~~~~~lllDEp~~~L----------D~~~~~~l~~~l~~~~---~--~~~vi~~tH~~~ 283 (322)
T 1e69_A 240 KPSPFYVLDEVDSPL----------DDYNAERFKRLLKENS---K--HTQFIVITHNKI 283 (322)
T ss_dssp SCCSEEEEESCCSSC----------CHHHHHHHHHHHHHHT---T--TSEEEEECCCTT
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHhc---C--CCeEEEEECCHH
Confidence 357899999977643 2222233444444442 1 234666676654
No 208
>3szy_A Phosphonoacetate hydrolase; alkaline phosphatase superfamily; 1.35A {Sinorhizobium meliloti} SCOP: c.76.1.0 PDB: 3szz_A 3t00_A 3t01_A 3t02_A
Probab=30.87 E-value=74 Score=25.38 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=17.6
Q ss_pred HHHcCCeEEEEccccccccccc
Q 030960 9 AKENAPAIIFIDEVDAIATARF 30 (168)
Q Consensus 9 a~~~~p~ii~iDe~D~l~~~~~ 30 (168)
.+...|.++++.++|..+...+
T Consensus 200 ~~~~~p~l~y~~~~D~~gH~~G 221 (427)
T 3szy_A 200 LREFRPDIMYLTTTDYVQHKYA 221 (427)
T ss_dssp HHHTCCSEEEEECCCHHHHHCC
T ss_pred HHhcCCCEEEEcccchhhccCC
Confidence 3567899999999999876543
No 209
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=30.63 E-value=72 Score=25.17 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=30.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (168)
.+..|-...|.||++||== ++-+......+..++..+ .+..++.+|..|.+.+.
T Consensus 143 aiArAL~~~P~lLLLDEPt----------s~LD~~~~~~l~~~l~~l---~~~~g~tii~vTHd~~e 196 (381)
T 3rlf_A 143 AIGRTLVAEPSVFLLDEPL----------SNLDAALRVQMRIEISRL---HKRLGRTMIYVTHDQVE 196 (381)
T ss_dssp HHHHHHHHCCSEEEEESTT----------TTSCHHHHHHHHHHHHHH---HHHHCCEEEEECSCHHH
T ss_pred HHHHHHHcCCCEEEEECCC----------cCCCHHHHHHHHHHHHHH---HHhCCCEEEEEECCHHH
Confidence 3445556789999999932 233333333333333333 23335567788887654
No 210
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=30.63 E-value=57 Score=25.48 Aligned_cols=54 Identities=13% Similarity=0.238 Sum_probs=29.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (168)
.+..|-...|.++++||==+ +-+......+..++..+ .+..+..+|.+|++.+.
T Consensus 143 alArAL~~~P~lLLLDEP~s----------~LD~~~r~~l~~~l~~l---~~~~g~tvi~vTHd~~~ 196 (362)
T 2it1_A 143 AIARALVKEPEVLLLDEPLS----------NLDALLRLEVRAELKRL---QKELGITTVYVTHDQAE 196 (362)
T ss_dssp HHHHHHTTCCSEEEEESGGG----------GSCHHHHHHHHHHHHHH---HHHHTCEEEEEESCHHH
T ss_pred HHHHHHHcCCCEEEEECccc----------cCCHHHHHHHHHHHHHH---HHhCCCEEEEECCCHHH
Confidence 34555677899999999433 22232333333344433 22224557777777654
No 211
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=30.56 E-value=1.2e+02 Score=25.18 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=29.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
...|-...|.|+++||.=+ +-+...+..+...+..+. + +..+|..|++++.+
T Consensus 502 iAral~~~p~illlDEpts----------~LD~~~~~~i~~~l~~~~---~--~~t~i~itH~l~~~ 553 (598)
T 3qf4_B 502 ITRAFLANPKILILDEATS----------NVDTKTEKSIQAAMWKLM---E--GKTSIIIAHRLNTI 553 (598)
T ss_dssp HHHHHHTCCSEEEECCCCT----------TCCHHHHHHHHHHHHHHH---T--TSEEEEESCCTTHH
T ss_pred HHHHHhcCCCEEEEECCcc----------CCCHHHHHHHHHHHHHHc---C--CCEEEEEecCHHHH
Confidence 4455567899999999543 223333334444444442 1 34577788887654
No 212
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=29.94 E-value=40 Score=32.20 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCC---CCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDA---QTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~---~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (168)
|..+...++..+|++|++|-+.++.+...-. ....-.-..+.+++.|..|.+.-+..++.+|.+.....
T Consensus 1498 l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~ 1569 (1706)
T 3cmw_A 1498 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 1569 (1706)
T ss_dssp HHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC-
T ss_pred HHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEeecccc
Confidence 3456777889999999999999999765322 11222223466777777776665556777777755433
No 213
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=28.80 E-value=68 Score=24.11 Aligned_cols=62 Identities=15% Similarity=0.301 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEE--ecCCCCCCCccccC
Q 030960 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIM--ATNRADTLDPALLR 78 (168)
Q Consensus 2 l~~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~--ttn~~~~ld~al~r 78 (168)
+++++.. +..+|-++++|.++.-+ ..++.+++.....-....+|++|. |.|.|...|.-+..
T Consensus 12 l~RLLsL-re~SPltLvLDSLeQsA--------------~pLi~E~i~rak~~~~k~~IIyvSFETl~kP~~ad~FI~a 75 (270)
T 4a8j_B 12 LKRILSL-TESSPFILCLDSIAQTS--------------YKLIQEFVHQSKSKGNEYPIVYISFETVNKPSYCTQFIDA 75 (270)
T ss_dssp HHHHHTT-CSCCSEEEEEEBTTBCS--------------HHHHHHHHHHHHHTSCCCCEEEEESSCCSCCTTCSEEEET
T ss_pred HHHHhcc-cCCCCeEEEeecccccC--------------hHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCeeeEc
Confidence 4455553 45589999999887421 156666666543111233566666 77777777754443
No 214
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=28.80 E-value=23 Score=26.13 Aligned_cols=15 Identities=7% Similarity=0.275 Sum_probs=13.0
Q ss_pred CCeEEEEcccccccc
Q 030960 13 APAIIFIDEVDAIAT 27 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~ 27 (168)
.|.+|+|||+-.+.+
T Consensus 133 ~~~livlDe~~~~~~ 147 (279)
T 1nlf_A 133 GRRLMVLDTLRRFHI 147 (279)
T ss_dssp TCSEEEEECGGGGCC
T ss_pred CCCEEEECCHHHhcC
Confidence 699999999998764
No 215
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=28.80 E-value=1.3e+02 Score=25.01 Aligned_cols=52 Identities=13% Similarity=0.299 Sum_probs=29.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
...|-...|.|+++||.=+ +-+...+..+...+..+. + +..+|..|++++.+
T Consensus 490 lARal~~~p~illlDEpts----------~LD~~~~~~i~~~l~~~~---~--~~tvi~itH~l~~~ 541 (587)
T 3qf4_A 490 IARALVKKPKVLILDDCTS----------SVDPITEKRILDGLKRYT---K--GCTTFIITQKIPTA 541 (587)
T ss_dssp HHHHHHTCCSEEEEESCCT----------TSCHHHHHHHHHHHHHHS---T--TCEEEEEESCHHHH
T ss_pred HHHHHHcCCCEEEEECCcc----------cCCHHHHHHHHHHHHHhC---C--CCEEEEEecChHHH
Confidence 4455567899999999543 223333344444444442 2 34466677766543
No 216
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=28.66 E-value=18 Score=25.83 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=11.7
Q ss_pred CeEEEEcccccccc
Q 030960 14 PAIIFIDEVDAIAT 27 (168)
Q Consensus 14 p~ii~iDe~D~l~~ 27 (168)
-..|++||+|.+..
T Consensus 176 ~~~lViDEah~~~~ 189 (245)
T 3dkp_A 176 VEWLVVDESDKLFE 189 (245)
T ss_dssp CCEEEESSHHHHHH
T ss_pred CcEEEEeChHHhcc
Confidence 56799999999864
No 217
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=28.49 E-value=1e+02 Score=25.41 Aligned_cols=55 Identities=7% Similarity=0.103 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCC
Q 030960 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (168)
Q Consensus 4 ~iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (168)
-.+..|-...|.|+++||== ++-+......+..++..+ ....+..||.+|.+.+.
T Consensus 394 v~iAraL~~~p~lLlLDEPT----------~gLD~~~~~~i~~~l~~l---~~~~g~tvi~vsHdl~~ 448 (538)
T 3ozx_A 394 LYIAATLAKEADLYVLDQPS----------SYLDVEERYIVAKAIKRV---TRERKAVTFIIDHDLSI 448 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTT----------TTCCHHHHHHHHHHHHHH---HHHTTCEEEEECSCHHH
T ss_pred HHHHHHHHcCCCEEEEeCCc----------cCCCHHHHHHHHHHHHHH---HHhCCCEEEEEeCCHHH
Confidence 34566677889999999932 233333334444444444 22234456666766553
No 218
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=28.45 E-value=93 Score=22.67 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=28.9
Q ss_pred HHHHHcCCe-------EEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 7 RLAKENAPA-------IIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 7 ~~a~~~~p~-------ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
..|-...|. ++++||--+ +-+......+..++..+. .. +..||.+|++++.+
T Consensus 138 AraL~~~p~~~~~~~~lllLDEPts----------~LD~~~~~~l~~~l~~l~---~~-g~tviivtHd~~~~ 196 (249)
T 2qi9_C 138 AAVVLQITPQANPAGQLLLLDEPMN----------SLDVAQQSALDKILSALS---QQ-GLAIVMSSHDLNHT 196 (249)
T ss_dssp HHHHHHHCTTTCTTCCEEEESSTTT----------TCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCHHHH
T ss_pred HHHHHcCCCcCCCCCeEEEEECCcc----------cCCHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHH
Confidence 344455588 999999433 333333344444555442 22 44577778776543
No 219
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=28.41 E-value=24 Score=28.22 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.2
Q ss_pred HHcCCeEEEEcccccccc
Q 030960 10 KENAPAIIFIDEVDAIAT 27 (168)
Q Consensus 10 ~~~~p~ii~iDe~D~l~~ 27 (168)
+.+.|.+|+||.+..+..
T Consensus 307 ~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 307 SQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHSCCCEEEEECGGGCBC
T ss_pred HHcCCCEEEEcChhhcCC
Confidence 356899999999999864
No 220
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=27.79 E-value=50 Score=21.20 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 120 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 120 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
++..-+..++.++...|-..+++.|+.+|+.-++++.
T Consensus 51 ~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn 87 (107)
T 3b0b_B 51 ITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC
Confidence 3445566777788888888889999999999888753
No 221
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=27.74 E-value=24 Score=28.61 Aligned_cols=19 Identities=11% Similarity=0.287 Sum_probs=15.1
Q ss_pred HHHcCCeEEEEcccccccc
Q 030960 9 AKENAPAIIFIDEVDAIAT 27 (168)
Q Consensus 9 a~~~~p~ii~iDe~D~l~~ 27 (168)
.+.+.|.+|+||-+..+..
T Consensus 350 ~~~~~~~lvVID~l~~l~~ 368 (503)
T 1q57_A 350 RSGLGCDVIILDHISIVVS 368 (503)
T ss_dssp HHTTCCSEEEEECTTCCCS
T ss_pred HHhcCCCEEEEccchhcCC
Confidence 3456799999999998753
No 222
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=27.74 E-value=1e+02 Score=18.40 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHhhc
Q 030960 125 IAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 125 i~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 157 (168)
+.+++..|+..|-.|+...+...|+.-.+++.-
T Consensus 40 V~~V~~~ac~lAKhR~s~~le~kDvql~Ler~w 72 (76)
T 1h3o_B 40 IESVVTAACQLARHRKSSTLEVKDVQLHLERQW 72 (76)
T ss_dssp HHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHhhc
Confidence 566778888888889888999999998887653
No 223
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=27.49 E-value=74 Score=21.96 Aligned_cols=38 Identities=11% Similarity=0.103 Sum_probs=28.0
Q ss_pred CeEEEEecCCCCCCCccccCCCCcceEEecCCCC---HHHHHHHHH
Q 030960 59 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD---RRQKRLVFQ 101 (168)
Q Consensus 59 ~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~---~~~R~~il~ 101 (168)
=++|||- ++-++++++. |.|..+.++..+ .=.|.-+++
T Consensus 97 i~FvIGG---a~Gl~~~v~~--rAd~~lSlS~mTfpHqL~RliL~E 137 (163)
T 1o6d_A 97 ITILIGG---PYGLNEEIFA--KAHRVFSLSKMTFTHGMTVLIVLE 137 (163)
T ss_dssp EEEEECC---TTCCCGGGGG--GCSEEEECCSSCCCHHHHHHHHHH
T ss_pred EEEEEEC---CCCCCHHHHH--hhCceEEccCCCCcHHHHHHHHHH
Confidence 3577766 7899999999 999999987554 445554444
No 224
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=27.38 E-value=53 Score=20.34 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 120 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 120 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
++...+..+..++...|-..+++.|+.+|+.-+.++
T Consensus 44 ~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 44 LAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 444566777777778888888999999999988765
No 225
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=27.35 E-value=1.1e+02 Score=18.75 Aligned_cols=62 Identities=18% Similarity=0.126 Sum_probs=35.2
Q ss_pred HHHHHhhcCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHh-CCCccCHHHHHHHHHhhcCC
Q 030960 97 RLVFQMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK-NRYVILPKDFEKGYRTNVKK 159 (168)
Q Consensus 97 ~~il~~~l~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~-~~~~i~~~d~~~al~~~~p~ 159 (168)
.+++...++..+. +.++-...|++--=+-.++..|....-+. ...+|...|+.+|+.+.+..
T Consensus 23 Krl~~~~~~~~v~-~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~~~ 85 (89)
T 1bh9_B 23 KRLIQSITGTSVS-QNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSK 85 (89)
T ss_dssp HHHHHHHHSSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHc
Confidence 3344444443332 23333334555555555666665444444 35699999999999987643
No 226
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=27.29 E-value=29 Score=26.30 Aligned_cols=52 Identities=19% Similarity=0.352 Sum_probs=27.6
Q ss_pred HcCCe--EEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCC
Q 030960 11 ENAPA--IIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR 68 (168)
Q Consensus 11 ~~~p~--ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~ 68 (168)
.+.+. +|+||-+..+.... . .... ...+..++..|..+.+..++.||+++.-
T Consensus 177 ~~~~~~~lVVID~l~~l~~~~--~--~~~r--~~~i~~~~~~Lk~lAk~~~i~vi~lsql 230 (315)
T 3bh0_A 177 KNPGKRVIVMIDYLQLLEPAK--A--NDSR--TNQISQISRDLKKMARELDVVVIALSQL 230 (315)
T ss_dssp TSSSCCEEEEEECGGGSBCSC--T--TSCH--HHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred hcCCCCeEEEEeCchhcCCCC--C--CCCH--HHHHHHHHHHHHHHHHHhCCeEEEEeec
Confidence 44566 99999999986421 1 1111 1233344444443334446666666553
No 227
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=26.91 E-value=28 Score=24.77 Aligned_cols=44 Identities=16% Similarity=0.284 Sum_probs=22.2
Q ss_pred HHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 10 KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 10 ~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
-...|.+|++||--+- ....+..++..+ .. +..+| +|.+++.++
T Consensus 119 L~~~p~lllLDEPts~--------------~~~~l~~~l~~l----~~-g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 119 RTLNDAFVILDEAQNT--------------TPAQMKMFLTRL----GF-GSKMV-VTGDITQVD 162 (208)
T ss_dssp CCBCSEEEEECSGGGC--------------CHHHHHHHHTTB----CT-TCEEE-EEEC-----
T ss_pred HhcCCCEEEEeCCccc--------------cHHHHHHHHHHh----cC-CCEEE-EECCHHHHh
Confidence 3456999999995432 113333344433 22 44566 888777665
No 228
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=26.01 E-value=1.1e+02 Score=18.39 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHh
Q 030960 93 RRQKRLVFQMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK----NRYVILPKDFEKGYRT 155 (168)
Q Consensus 93 ~~~R~~il~~~l~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~----~~~~i~~~d~~~al~~ 155 (168)
.+--.+||+.++.++.. .+.+..--.+..-|.-++++|..+|... +...+..+|+++.+-+
T Consensus 11 ~~lI~ril~~~f~~~kt--rI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 11 KETVERLLRLHFRDGRT--RVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp HHHHHHHHHHHCCSTTC--EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHH
Confidence 44455677776663210 1111111234556778888888877764 5678999999986643
No 229
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=25.23 E-value=1.5e+02 Score=19.59 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=30.5
Q ss_pred HHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCCccccCCCCcceEEec
Q 030960 9 AKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEF 88 (168)
Q Consensus 9 a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~ 88 (168)
|-...|.++++||--+ +-+......+..++..+. .. +..+|.+|++.+ +.. ..|+.+.+
T Consensus 77 al~~~p~lllLDEPt~----------~LD~~~~~~l~~~l~~~~---~~-~~tiiivsH~~~-----~~~--~~d~ii~l 135 (148)
T 1f2t_B 77 YLAGEISLLILDEPTP----------YLDEERRRKLITIMERYL---KK-IPQVILVSHDEE-----LKD--AADHVIRI 135 (148)
T ss_dssp HHHSSCSEEEEESCSC----------TTCHHHHHHHHHHHHHTG---GG-SSEEEEEESCGG-----GGG--GCSEEEEE
T ss_pred HHcCCCCEEEEECCCc----------cCCHHHHHHHHHHHHHHH---cc-CCEEEEEEChHH-----HHH--hCCEEEEE
Confidence 3446799999999443 222222333444444442 22 234566666542 223 45666665
No 230
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=24.94 E-value=1.6e+02 Score=22.60 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=24.5
Q ss_pred cCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCC
Q 030960 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (168)
..|.++++||-=+ +-+......+..++..+ ... +..||.+|++++
T Consensus 302 ~~p~~lllDEpt~----------~LD~~~~~~~~~~l~~l---~~~-g~tvi~itH~~~ 346 (365)
T 3qf7_A 302 GRLDAFFIDEGFS----------SLDTENKEKIASVLKEL---ERL-NKVIVFITHDRE 346 (365)
T ss_dssp TTCCEEEEESCCT----------TSCHHHHHHHHHHHHGG---GGS-SSEEEEEESCHH
T ss_pred CCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHH---HhC-CCEEEEEecchH
Confidence 5799999999332 33333333334444444 333 445666666654
No 231
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=24.30 E-value=1.7e+02 Score=22.97 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=12.2
Q ss_pred cCCeEEEEccccccc
Q 030960 12 NAPAIIFIDEVDAIA 26 (168)
Q Consensus 12 ~~p~ii~iDe~D~l~ 26 (168)
..|.++++||.++-+
T Consensus 354 ~~~~~lllDEp~~~L 368 (430)
T 1w1w_A 354 QPSPFFVLDEVDAAL 368 (430)
T ss_dssp SCCSEEEESSTTTTC
T ss_pred CCCCEEEeCCCcccC
Confidence 468999999998654
No 232
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=23.99 E-value=13 Score=25.32 Aligned_cols=64 Identities=6% Similarity=0.218 Sum_probs=34.7
Q ss_pred HHHcCCeEEEEcccccccccccC---CCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCCC
Q 030960 9 AKENAPAIIFIDEVDAIATARFD---AQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (168)
Q Consensus 9 a~~~~p~ii~iDe~D~l~~~~~~---~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (168)
|-...|.++++||=-+-+..+.. ...-......+....+...+..+.+. +..+|.+|++++.+.
T Consensus 97 al~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~~~~ 163 (171)
T 4gp7_A 97 DYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPEEVE 163 (171)
T ss_dssp HTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHHHHH
T ss_pred HcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHHHhh
Confidence 33456999999996554422211 01122223334555666666665444 555777777665543
No 233
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=23.89 E-value=1.4e+02 Score=18.73 Aligned_cols=54 Identities=9% Similarity=0.054 Sum_probs=34.6
Q ss_pred HhhcCCCCCHHHHHhCCCCCCHHHHHHHHHHH-------HHHH---H-HhCCCccCHHHHHHHHHhhc
Q 030960 101 QMNLSDEVDLEDYVSRPDKISAAEIAAICQEA-------GMHA---V-RKNRYVILPKDFEKGYRTNV 157 (168)
Q Consensus 101 ~~~l~~~~~~~~la~~t~g~s~~di~~l~~~a-------~~~a---~-~~~~~~i~~~d~~~al~~~~ 157 (168)
...+. .+|..+|... ||+..||..+-.+. +... + .+....-|.+.+.+||....
T Consensus 25 a~~lg--~~Wk~LAr~L-g~s~~~I~~I~~~~p~~~~eq~~~mL~~W~~~~g~~AT~~~L~~aL~~i~ 89 (111)
T 2yqf_A 25 SEHLG--LSWAELAREL-QFSVEDINRIRVENPNSLLEQSVALLNLWVIREGQNANMENLYTALQSID 89 (111)
T ss_dssp HHHHT--TTHHHHHHHT-TCCHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHTT
T ss_pred HHHHh--hhHHHHHHHc-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHcC
Confidence 34453 5999999987 89999998875432 1111 1 22223357778888877643
No 234
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=23.08 E-value=22 Score=30.84 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=12.3
Q ss_pred HHcCCeEEEEccccc
Q 030960 10 KENAPAIIFIDEVDA 24 (168)
Q Consensus 10 ~~~~p~ii~iDe~D~ 24 (168)
....+.+|+|||+|.
T Consensus 205 ~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 205 DLSRYSCIILDEAHE 219 (773)
T ss_dssp TCTTEEEEEECSGGG
T ss_pred cccCCCEEEecCccc
Confidence 345689999999995
No 235
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=22.99 E-value=42 Score=23.39 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=11.4
Q ss_pred CeEEEEccccccc
Q 030960 14 PAIIFIDEVDAIA 26 (168)
Q Consensus 14 p~ii~iDe~D~l~ 26 (168)
-.+|++||+|.+.
T Consensus 151 ~~~lViDEah~~~ 163 (219)
T 1q0u_A 151 AHILVVDEADLML 163 (219)
T ss_dssp CCEEEECSHHHHH
T ss_pred ceEEEEcCchHHh
Confidence 5789999999986
No 236
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=22.95 E-value=60 Score=22.52 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=27.8
Q ss_pred CeEEEEecCCCCCCCccccCCCCcceEEecCCCC---HHHHHHHHH
Q 030960 59 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD---RRQKRLVFQ 101 (168)
Q Consensus 59 ~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~P~---~~~R~~il~ 101 (168)
=++|||- ++-++++++. |.|..+.++..+ .=.|.-+++
T Consensus 103 i~FvIGG---a~Gl~~~v~~--rA~~~lSlS~mTfpHqL~RliL~E 143 (167)
T 1to0_A 103 VTFVIGG---SLGLSDTVMK--RADEKLSFSKMTFPHQLMRLILVE 143 (167)
T ss_dssp EEEEECC---SSCCCHHHHH--HCSEEEESCSSCCCHHHHHHHHHH
T ss_pred EEEEEEC---CCCCCHHHHH--hhCcEEEccCCCCcHHHHHHHHHH
Confidence 3567766 7889999999 999999997554 445554444
No 237
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=22.83 E-value=1.5e+02 Score=19.25 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 120 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 120 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
+|+ .+..+++.|...|.+.+...|+.+++.-|+-..
T Consensus 82 ~s~-~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~ 117 (145)
T 3fes_A 82 LSP-RSKQILELSGMFANKLKTNYIGTEHILLAIIQE 117 (145)
T ss_dssp ECH-HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhC
Confidence 444 688888999999988888899999999888654
No 238
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=22.76 E-value=1.4e+02 Score=18.19 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCeEEEEcc
Q 030960 3 RDVFRLAKENAPAIIFIDE 21 (168)
Q Consensus 3 ~~iF~~a~~~~p~ii~iDe 21 (168)
.+.++.+....|.+|++|-
T Consensus 37 ~~a~~~l~~~~~dlvi~d~ 55 (133)
T 3nhm_A 37 ASGLQQALAHPPDVLISDV 55 (133)
T ss_dssp HHHHHHHHHSCCSEEEECS
T ss_pred HHHHHHHhcCCCCEEEEeC
Confidence 4566777788899999984
No 239
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=22.49 E-value=33 Score=24.11 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=11.8
Q ss_pred CeEEEEcccccccc
Q 030960 14 PAIIFIDEVDAIAT 27 (168)
Q Consensus 14 p~ii~iDe~D~l~~ 27 (168)
-.+|++||+|.+..
T Consensus 168 ~~~lViDEah~~~~ 181 (228)
T 3iuy_A 168 ITYLVIDEADKMLD 181 (228)
T ss_dssp CCEEEECCHHHHHH
T ss_pred ceEEEEECHHHHhc
Confidence 57899999998863
No 240
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=22.24 E-value=1.2e+02 Score=19.33 Aligned_cols=35 Identities=23% Similarity=0.187 Sum_probs=19.2
Q ss_pred HHHHHHHHhhcCCCCCHHHHHhCCCCCCHHHHHHHHH
Q 030960 94 RQKRLVFQMNLSDEVDLEDYVSRPDKISAAEIAAICQ 130 (168)
Q Consensus 94 ~~R~~il~~~l~~~~~~~~la~~t~g~s~~di~~l~~ 130 (168)
.+|.+|.+... ....+.++++.+ |.|-+.|.++.+
T Consensus 46 aqR~~Ia~lL~-~G~SyreIa~~t-G~StaTIsRv~r 80 (107)
T 3frw_A 46 SQRFEVAKMLT-DKRTYLDISEKT-GASTATISRVNR 80 (107)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHH-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHH-CccHHHHHHHHH
Confidence 34444444433 336677776665 667666666533
No 241
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=22.12 E-value=44 Score=22.85 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=12.2
Q ss_pred CCeEEEEcccccccc
Q 030960 13 APAIIFIDEVDAIAT 27 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~ 27 (168)
.-.+|++||+|.+..
T Consensus 146 ~~~~lViDEah~~~~ 160 (206)
T 1vec_A 146 HVQMIVLDEADKLLS 160 (206)
T ss_dssp TCCEEEEETHHHHTS
T ss_pred cCCEEEEEChHHhHh
Confidence 357899999999863
No 242
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=22.08 E-value=1.6e+02 Score=19.12 Aligned_cols=34 Identities=6% Similarity=-0.060 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhh
Q 030960 123 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 156 (168)
Q Consensus 123 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 156 (168)
..+..+++.|...|...+...|+.+++.-|+-..
T Consensus 84 ~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~ 117 (146)
T 3fh2_A 84 PRAKKVLELSLREGLQMGHKYIGTEFLLLGLIRE 117 (146)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhC
Confidence 4678888999999988888889999999888654
No 243
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=22.04 E-value=52 Score=23.41 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=11.7
Q ss_pred CeEEEEcccccccc
Q 030960 14 PAIIFIDEVDAIAT 27 (168)
Q Consensus 14 p~ii~iDe~D~l~~ 27 (168)
-..|++||+|.+..
T Consensus 177 ~~~lViDEah~l~~ 190 (242)
T 3fe2_A 177 TTYLVLDEADRMLD 190 (242)
T ss_dssp CCEEEETTHHHHHH
T ss_pred ccEEEEeCHHHHhh
Confidence 56899999998863
No 244
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=22.03 E-value=46 Score=23.68 Aligned_cols=14 Identities=14% Similarity=0.328 Sum_probs=11.2
Q ss_pred cCCeEEEEcccccc
Q 030960 12 NAPAIIFIDEVDAI 25 (168)
Q Consensus 12 ~~p~ii~iDe~D~l 25 (168)
....+|+|||+|..
T Consensus 175 ~~~~~lVlDEah~~ 188 (235)
T 3llm_A 175 RGISHVIVDEIHER 188 (235)
T ss_dssp TTCCEEEECCTTSC
T ss_pred cCCcEEEEECCccC
Confidence 34689999999963
No 245
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=21.97 E-value=1.5e+02 Score=18.41 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=19.6
Q ss_pred HHHHHHHHhhcCCCCCHHHHHhCCCCCCHHHHHHH
Q 030960 94 RQKRLVFQMNLSDEVDLEDYVSRPDKISAAEIAAI 128 (168)
Q Consensus 94 ~~R~~il~~~l~~~~~~~~la~~t~g~s~~di~~l 128 (168)
..-..++...+.....++++|+.. |+|...|..+
T Consensus 10 ~~~~~~i~~~~~~~~~~~~lA~~~-~~S~~~l~r~ 43 (120)
T 3mkl_A 10 TRVCTVINNNIAHEWTLARIASEL-LMSPSLLKKK 43 (120)
T ss_dssp HHHHHHHHTSTTSCCCHHHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHH-CcCHHHHHHH
Confidence 344456666666677888887654 3444433333
No 246
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=21.90 E-value=51 Score=24.91 Aligned_cols=15 Identities=27% Similarity=0.415 Sum_probs=12.4
Q ss_pred CCeEEEEcccccccc
Q 030960 13 APAIIFIDEVDAIAT 27 (168)
Q Consensus 13 ~p~ii~iDe~D~l~~ 27 (168)
...+|++||+|.+..
T Consensus 145 ~~~~iIiDEah~~~~ 159 (395)
T 3pey_A 145 KIKIFVLDEADNMLD 159 (395)
T ss_dssp TCCEEEEETHHHHHH
T ss_pred cCCEEEEEChhhhcC
Confidence 367999999998864
No 247
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=21.85 E-value=88 Score=20.44 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=25.2
Q ss_pred CHHHHHHHHHhhcCCCCCHHHHHhCCCCCCHHHHHHHHH
Q 030960 92 DRRQKRLVFQMNLSDEVDLEDYVSRPDKISAAEIAAICQ 130 (168)
Q Consensus 92 ~~~~R~~il~~~l~~~~~~~~la~~t~g~s~~di~~l~~ 130 (168)
...+|.++++..... ..+.+||+.+ |.|.+.|....+
T Consensus 61 aLs~R~eV~klL~~G-~syreIA~~~-g~S~aTIsRv~r 97 (119)
T 3kor_A 61 SLSQRLQVAKMIKQG-YTYATIEQES-GASTATISRVKR 97 (119)
T ss_dssp HHHHHHHHHHHHHHT-CCHHHHHHHH-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHH-CCCHHHHHHHHH
Confidence 345666777664444 7788888877 788888877543
No 248
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.53 E-value=54 Score=16.95 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=12.3
Q ss_pred CCCCCCHHHHHHHHHH
Q 030960 116 RPDKISAAEIAAICQE 131 (168)
Q Consensus 116 ~t~g~s~~di~~l~~~ 131 (168)
.-+||||.++..+-.+
T Consensus 13 kkegfspeelaalese 28 (48)
T 1g6u_A 13 KKEGFSPEELAALESE 28 (48)
T ss_dssp HHTTCSHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHH
Confidence 4589999999877544
No 249
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=21.45 E-value=38 Score=23.16 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=11.4
Q ss_pred CeEEEEccccccc
Q 030960 14 PAIIFIDEVDAIA 26 (168)
Q Consensus 14 p~ii~iDe~D~l~ 26 (168)
-.+|++||+|.+.
T Consensus 145 ~~~iViDEah~~~ 157 (207)
T 2gxq_A 145 VEVAVLDEADEML 157 (207)
T ss_dssp CSEEEEESHHHHH
T ss_pred ceEEEEEChhHhh
Confidence 5799999999876
No 250
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=21.32 E-value=1.5e+02 Score=18.12 Aligned_cols=37 Identities=8% Similarity=0.048 Sum_probs=27.0
Q ss_pred HHHHHHhhcCCCCCHHHHHhCCCCCCHHHHHHHHHHH
Q 030960 96 KRLVFQMNLSDEVDLEDYVSRPDKISAAEIAAICQEA 132 (168)
Q Consensus 96 R~~il~~~l~~~~~~~~la~~t~g~s~~di~~l~~~a 132 (168)
|..|+.........+.+|++..+|.|..-+...++.-
T Consensus 16 ~~~IL~~L~~~~~~~~eLa~~l~~is~~tls~~L~~L 52 (107)
T 2hzt_A 16 KXVILXHLTHGKKRTSELKRLMPNITQKMLTQQLREL 52 (107)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3445544445668899999999899999888877653
No 251
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=21.12 E-value=79 Score=20.47 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 120 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 120 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
++...+..+..++...|-..+++.|+.+|+.-++++
T Consensus 59 l~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 59 LTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 344556677777778888888999999999988765
No 252
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=21.09 E-value=1.1e+02 Score=24.18 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=14.2
Q ss_pred HHHHHHHcCCeEEEEcccc
Q 030960 5 VFRLAKENAPAIIFIDEVD 23 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D 23 (168)
.+..|-...|.|+++||-=
T Consensus 165 alARAL~~~P~lLLLDEPt 183 (390)
T 3gd7_A 165 CLARSVLSKAKILLLDEPS 183 (390)
T ss_dssp HHHHHHHTTCCEEEEESHH
T ss_pred HHHHHHhcCCCEEEEeCCc
Confidence 4455667789999999943
No 253
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=20.97 E-value=1.6e+02 Score=18.19 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=11.7
Q ss_pred HHHHHHHH------cCCeEEEEcc
Q 030960 4 DVFRLAKE------NAPAIIFIDE 21 (168)
Q Consensus 4 ~iF~~a~~------~~p~ii~iDe 21 (168)
++++..+. ..|.+|++|-
T Consensus 44 ~a~~~l~~~~~~~~~~~dlii~D~ 67 (143)
T 2qvg_A 44 QALDMLYGRNKENKIHPKLILLDI 67 (143)
T ss_dssp HHHHHHHTCTTCCCCCCSEEEEET
T ss_pred HHHHHHHhcccccCCCCCEEEEec
Confidence 34455554 6688998874
No 254
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=20.79 E-value=1.6e+02 Score=18.24 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=28.6
Q ss_pred HHHHHHhhcCCCCC--HHHHHhCCCCCCHHHHHHHHHHH
Q 030960 96 KRLVFQMNLSDEVD--LEDYVSRPDKISAAEIAAICQEA 132 (168)
Q Consensus 96 R~~il~~~l~~~~~--~~~la~~t~g~s~~di~~l~~~a 132 (168)
|..|+......... +.+|++..+|.|+.-+...++.-
T Consensus 29 rl~IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~L 67 (111)
T 3df8_A 29 TMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDL 67 (111)
T ss_dssp HHHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence 55666655566666 99999999999999988876643
No 255
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=20.67 E-value=1.5e+02 Score=17.95 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=23.8
Q ss_pred HHHHHHHhhcCCCCCHHHHHhCCCCCCHHHHHHHHHHH
Q 030960 95 QKRLVFQMNLSDEVDLEDYVSRPDKISAAEIAAICQEA 132 (168)
Q Consensus 95 ~R~~il~~~l~~~~~~~~la~~t~g~s~~di~~l~~~a 132 (168)
.-.+++...+.....++++|+.. |+|...+..+.+..
T Consensus 9 ~~~~~i~~~~~~~~~~~~lA~~~-~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 9 NVLSYITEHFSEGMSLKTLGNDF-HINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 34456666777788999998875 45555555555443
No 256
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=20.57 E-value=1.5e+02 Score=19.20 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHH----HHHHhCCCccCHHHHHHHHHh
Q 030960 121 SAAEIAAICQEAGM----HAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 121 s~~di~~l~~~a~~----~a~~~~~~~i~~~d~~~al~~ 155 (168)
..+-|+.++.+... .|...++..|+.+|+..|+..
T Consensus 49 LaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 49 MAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 33445544444433 333345678999999999873
No 257
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=20.51 E-value=73 Score=24.08 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=11.7
Q ss_pred CCeEEEEccccccc
Q 030960 13 APAIIFIDEVDAIA 26 (168)
Q Consensus 13 ~p~ii~iDe~D~l~ 26 (168)
...+|++||+|.+.
T Consensus 152 ~~~~vViDEaH~~~ 165 (391)
T 1xti_A 152 HIKHFILDECDKML 165 (391)
T ss_dssp TCSEEEECSHHHHT
T ss_pred ccCEEEEeCHHHHh
Confidence 35789999999885
No 258
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=20.46 E-value=1.6e+02 Score=24.64 Aligned_cols=55 Identities=9% Similarity=0.094 Sum_probs=30.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
.+..|-...|.++++||== ++-+......+..++..+. ...+..||.+|.+.+.+
T Consensus 481 ~iAraL~~~p~lLlLDEPt----------~~LD~~~~~~l~~~l~~l~---~~~g~tvi~vsHd~~~~ 535 (607)
T 3bk7_A 481 AIAATLLRDADIYLLDEPS----------AYLDVEQRLAVSRAIRHLM---EKNEKTALVVEHDVLMI 535 (607)
T ss_dssp HHHHHHTSCCSEEEEECTT----------TTCCHHHHHHHHHHHHHHH---HHTTCEEEEECSCHHHH
T ss_pred HHHHHHHhCCCEEEEeCCc----------cCCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHHH
Confidence 4455667789999999932 2333333344444544442 12234567777765543
No 259
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=20.45 E-value=1.5e+02 Score=17.89 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=23.3
Q ss_pred HHHHHHhhcCCCCCHHHHHhCCCCCCHHHHHHHHHHH
Q 030960 96 KRLVFQMNLSDEVDLEDYVSRPDKISAAEIAAICQEA 132 (168)
Q Consensus 96 R~~il~~~l~~~~~~~~la~~t~g~s~~di~~l~~~a 132 (168)
-.+++...+.....++++|+.. |+|...+..+.+..
T Consensus 7 ~~~~i~~~~~~~~~~~~lA~~~-~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 7 VEEYIEANWMRPITIEKLTALT-GISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred HHHHHHHcccCCCCHHHHHHHH-CCCHHHHHHHHHHH
Confidence 3455566667778899998875 55555555555543
No 260
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=20.44 E-value=1e+02 Score=20.76 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 030960 120 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 155 (168)
Q Consensus 120 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 155 (168)
++...+..+..++...|-..+++.|+.+|+.-++++
T Consensus 51 l~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 51 ITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 344556677788888888888899999999888765
No 261
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=20.16 E-value=1.3e+02 Score=24.29 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=12.0
Q ss_pred CCeEEEEccccccc
Q 030960 13 APAIIFIDEVDAIA 26 (168)
Q Consensus 13 ~p~ii~iDe~D~l~ 26 (168)
.-.+|+|||+|.+.
T Consensus 226 ~~~~lViDEah~l~ 239 (563)
T 3i5x_A 226 FVDYKVLDEADRLL 239 (563)
T ss_dssp TCCEEEEETHHHHT
T ss_pred cceEEEEeCHHHHh
Confidence 36899999999986
No 262
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=20.13 E-value=2.4e+02 Score=19.96 Aligned_cols=19 Identities=11% Similarity=0.041 Sum_probs=14.4
Q ss_pred HHHHHHHcCCeEEEEcccc
Q 030960 5 VFRLAKENAPAIIFIDEVD 23 (168)
Q Consensus 5 iF~~a~~~~p~ii~iDe~D 23 (168)
.+..|-...|.++++||--
T Consensus 140 ~lAral~~~p~lllLDEPt 158 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPF 158 (229)
T ss_dssp HHHHHHHSCCSEEEEESTT
T ss_pred HHHHHHhcCCCEEEEECcc
Confidence 3455667789999999954
No 263
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=20.04 E-value=1.9e+02 Score=23.89 Aligned_cols=52 Identities=23% Similarity=0.382 Sum_probs=29.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCcchHHHHHHHHHHHhccCCCCCCCeEEEEecCCCCCC
Q 030960 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (168)
Q Consensus 6 F~~a~~~~p~ii~iDe~D~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (168)
...|-...|.|+++||--+ +-+...+..+...+..+.. +..+|.+|++++.+
T Consensus 494 iAral~~~p~illlDEpts----------~LD~~~~~~i~~~l~~~~~-----~~tvi~itH~~~~~ 545 (595)
T 2yl4_A 494 IARALLKNPKILLLDEATS----------ALDAENEYLVQEALDRLMD-----GRTVLVIAHRLSTI 545 (595)
T ss_dssp HHHHHHHCCSEEEEECCCS----------SCCHHHHHHHHHHHHHHHT-----TSEEEEECCCHHHH
T ss_pred HHHHHHcCCCEEEEECccc----------CCCHHHHHHHHHHHHHHhc-----CCEEEEEecCHHHH
Confidence 4445566799999999543 2233333444444444421 23466777776543
Done!