BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030961
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 300 bits (767), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 136/163 (83%), Positives = 150/163 (92%)
Query: 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
SASRFIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G TVNLGLWDT
Sbjct: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDT 61
Query: 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP++LVGTKLD
Sbjct: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LR+DK + DHPG VP+TT QGEEL+K IG+ YIECSSKTQQ
Sbjct: 122 LRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQ 164
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 296 bits (757), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 135/163 (82%), Positives = 149/163 (91%)
Query: 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
SASRFIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVV G TVNLGLWDT
Sbjct: 4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDT 63
Query: 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTKLD
Sbjct: 64 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLD 123
Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LR+DK + DHPG VP+TT QGEEL+K IGA YIECSSK+Q+
Sbjct: 124 LRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQE 166
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 294 bits (752), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 132/163 (80%), Positives = 149/163 (91%)
Query: 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
S +RFIKCVTVGDGAVGKTCMLI YT N FPTDY+PTVFDNFSANVV +G+TVNLGLWDT
Sbjct: 2 STARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
Query: 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+ KKW+PEL+HY+PG+P+VLVGTKLD
Sbjct: 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLD 121
Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LR+DK +L DHPG +TTAQGEELRK IGA Y+ECSSKTQQ
Sbjct: 122 LRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQ 164
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 286 bits (733), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 133/163 (81%), Positives = 149/163 (91%), Gaps = 2/163 (1%)
Query: 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
S S+FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV +G VNLGLWDT
Sbjct: 5 SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDT 64
Query: 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
AGQEDY+RLRPLSYRGAD+FVLAFSL+S+ASYENVLKKW+PEL+ ++P VP+VLVGTKLD
Sbjct: 65 AGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLD 124
Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LR+DK YLADH + +T+ QGEELRKQIGA+ YIECSSKTQQ
Sbjct: 125 LRDDKGYLADHTNV--ITSTQGEELRKQIGAAAYIECSSKTQQ 165
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 215 bits (547), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 102/167 (61%), Positives = 126/167 (75%), Gaps = 2/167 (1%)
Query: 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLW 61
SS + IKCV VGDGAVGK C+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLW
Sbjct: 4 GSSGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLW 63
Query: 62 DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121
DTAGQEDY+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 64 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 123
Query: 122 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 124 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 170
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 215 bits (547), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 101/160 (63%), Positives = 124/160 (77%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWDTAGQED
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 82
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 83 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 142
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 143 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 182
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 214 bits (546), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 101/160 (63%), Positives = 124/160 (77%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 163
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 214 bits (546), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 101/160 (63%), Positives = 124/160 (77%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 163
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 214 bits (546), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 101/160 (63%), Positives = 124/160 (77%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 163
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 214 bits (546), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 101/160 (63%), Positives = 124/160 (77%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 163
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 214 bits (545), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 101/160 (63%), Positives = 124/160 (77%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 163
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 214 bits (545), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 101/160 (63%), Positives = 124/160 (77%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 163
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 214 bits (544), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 101/160 (63%), Positives = 124/160 (77%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWDTAGQED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 190
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 212 bits (539), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 123/160 (76%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N P +YIPTVFDN+SANV+ +G VNLGLWDTAGQED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 190
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 211 bits (538), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 122/160 (76%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ + VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FSLVS ASYENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG L K+I + Y+ECS+ TQ+
Sbjct: 124 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQR 163
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 211 bits (538), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 101/167 (60%), Positives = 125/167 (74%), Gaps = 2/167 (1%)
Query: 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLW 61
S + IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLW
Sbjct: 1 GSKLMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLW 60
Query: 62 DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121
DTAGQEDY+RLRPLSY DV ++ FSLVS AS+ENV KW PE++H+ P P++LVGTK
Sbjct: 61 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 120
Query: 122 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 121 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 167
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 211 bits (538), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 123/160 (76%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWDTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 163
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 211 bits (538), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 123/160 (76%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWDTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 163
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 211 bits (537), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 123/160 (76%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWDTAG ED
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 67 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 126
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 127 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 166
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 211 bits (537), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 123/160 (76%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DV ++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 163
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 211 bits (537), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 123/160 (76%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWDTAG ED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 190
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 211 bits (537), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 123/160 (76%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DV ++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 163
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 211 bits (536), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 123/160 (76%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N F +YIPTVFDN+SANV+ +G VNLGLWDTAGQED
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 133
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 134 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 173
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 211 bits (536), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 123/160 (76%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWDTAGQED
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DV ++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 66 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 126 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 165
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 210 bits (535), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/166 (59%), Positives = 124/166 (74%), Gaps = 2/166 (1%)
Query: 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWD 62
+A IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWD
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 209
Query: 63 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 122
TAG EDY+RLRPLSY DVF++ FSLVS AS+ +V KW PE++H+ P P++LVGTKL
Sbjct: 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKL 269
Query: 123 DLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
DLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 315
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 210 bits (535), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 99/166 (59%), Positives = 124/166 (74%), Gaps = 2/166 (1%)
Query: 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWD 62
+A IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWD
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 209
Query: 63 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 122
TAG EDY+RLRPLSY DVF++ FSLVS AS+ +V KW PE++H+ P P++LVGTKL
Sbjct: 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKL 269
Query: 123 DLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
DLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 315
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 210 bits (535), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 99/168 (58%), Positives = 125/168 (74%), Gaps = 2/168 (1%)
Query: 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
+ +A IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGL
Sbjct: 148 IDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 207
Query: 61 WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
WDTAG EDY+RLRPLSY DVF++ FSLVS AS+ +V KW PE++H+ P P++LVGT
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGT 267
Query: 121 KLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
KLDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 268 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 315
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 210 bits (534), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 99/160 (61%), Positives = 124/160 (77%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWDTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG + ++IG+ Y+ECS+ TQ+
Sbjct: 125 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQR 164
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 210 bits (534), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 99/160 (61%), Positives = 124/160 (77%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG + ++IG+ Y+ECS+ TQ+
Sbjct: 124 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQR 163
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 209 bits (533), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 99/160 (61%), Positives = 124/160 (77%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWDTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG + ++IG+ Y+ECS+ TQ+
Sbjct: 125 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQR 164
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 209 bits (533), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 101/167 (60%), Positives = 124/167 (74%), Gaps = 2/167 (1%)
Query: 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLW 61
S S+ IKCV VGD AVGKTC+LI YT+N FP +YIPTVFDN+SANV+ + VNLGLW
Sbjct: 3 GSGGSQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLW 62
Query: 62 DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121
DTAGQEDY+RLRPLSY DVF++ FSLVS ASYENV KW PE++H+ P P++LVGTK
Sbjct: 63 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTK 122
Query: 122 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LDLR+DK + L P+T QG L K+I + Y+ECS+ TQ+
Sbjct: 123 LDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQR 169
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 207 bits (527), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/160 (61%), Positives = 121/160 (75%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGD AVGKTC+LI YT+N FP +YIPTVFDN+SANV+ + VNLGLWDTAGQED
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FSLVS ASYENV KW PE++H+ P P++LVGTKLDLR+DK
Sbjct: 71 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 130
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ L P+T QG L K+I + Y+ECS+ TQ+
Sbjct: 131 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQR 170
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 206 bits (524), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 104/179 (58%), Positives = 127/179 (70%), Gaps = 21/179 (11%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G VNLGLWDTAGQED
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 69 YNRLRPLSY--------------RG-----ADVFVLAFSLVSRASYENVLKKWIPELQHY 109
Y+RLRPLSY RG ADVF++ FSLVS AS+ENV KW PE++H+
Sbjct: 66 YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHH 125
Query: 110 SPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
P P++LVGTKLDLR+DK + L P+T QG + K+IGA Y+ECS+ TQ+
Sbjct: 126 CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 184
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 189 bits (479), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 90/166 (54%), Positives = 122/166 (73%), Gaps = 4/166 (2%)
Query: 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
SA + IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V+ G LGL+DT
Sbjct: 6 SAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 65
Query: 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
AGQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++D
Sbjct: 66 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 125
Query: 124 LREDK---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LR+D LA + P+T E+L + + A Y+ECS+ TQ+
Sbjct: 126 LRDDPSTIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQK 170
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 187 bits (474), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 119/164 (72%), Gaps = 2/164 (1%)
Query: 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTA 64
S+ IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V+ G LGL+DTA
Sbjct: 4 GSQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 63
Query: 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 124
GQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++DL
Sbjct: 64 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 123
Query: 125 REDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
R+D + P+T E+L + + A Y+ECS+ TQ+
Sbjct: 124 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQK 167
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 186 bits (473), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 89/168 (52%), Positives = 121/168 (72%), Gaps = 4/168 (2%)
Query: 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLW 61
SS + IKCV VGDGAVGK C+LI YT+NKFP++Y+PTVFDN++ V+ G LGL+
Sbjct: 4 GSSGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLF 63
Query: 62 DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121
DTAGQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT+
Sbjct: 64 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 123
Query: 122 LDLREDK---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+DLR+D LA + P+T E+L + + A Y+ECS+ TQ+
Sbjct: 124 IDLRDDPSTIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQK 170
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 186 bits (473), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 88/161 (54%), Positives = 119/161 (73%), Gaps = 4/161 (2%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V+ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 ---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LA + P+T E+L + + A Y+ECS+ TQ+
Sbjct: 124 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQK 163
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 186 bits (473), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 88/161 (54%), Positives = 119/161 (73%), Gaps = 4/161 (2%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V+ G LGL+DTAGQED
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 133
Query: 129 ---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LA + P+T E+L + + A Y+ECS+ TQ+
Sbjct: 134 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQK 173
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 186 bits (473), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 88/161 (54%), Positives = 119/161 (73%), Gaps = 4/161 (2%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V+ G LGL+DTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 65 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 124
Query: 129 ---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LA + P+T E+L + + A Y+ECS+ TQ+
Sbjct: 125 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQK 164
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 186 bits (472), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 88/161 (54%), Positives = 119/161 (73%), Gaps = 4/161 (2%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V+ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 ---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LA + P+T E+L + + A Y+ECS+ TQ+
Sbjct: 124 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQK 163
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 186 bits (472), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 88/161 (54%), Positives = 119/161 (73%), Gaps = 4/161 (2%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V+ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 ---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LA + P+T E+L + + A Y+ECS+ TQ+
Sbjct: 124 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQK 163
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 186 bits (472), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 89/166 (53%), Positives = 121/166 (72%), Gaps = 4/166 (2%)
Query: 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
S + IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V+ G LGL+DT
Sbjct: 1 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 60
Query: 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
AGQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++D
Sbjct: 61 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 120
Query: 124 LREDK---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LR+D LA + P+T E+L + + A Y+ECS+ TQ+
Sbjct: 121 LRDDPSTIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQK 165
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 186 bits (472), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 89/166 (53%), Positives = 121/166 (72%), Gaps = 4/166 (2%)
Query: 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
S + IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V+ G LGL+DT
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
AGQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++D
Sbjct: 62 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 121
Query: 124 LREDK---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LR+D LA + P+T E+L + + A Y+ECS+ TQ+
Sbjct: 122 LRDDPSTIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQK 166
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 186 bits (472), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 89/166 (53%), Positives = 121/166 (72%), Gaps = 4/166 (2%)
Query: 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
S + IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V+ G LGL+DT
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
AGQEDY+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++D
Sbjct: 62 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 121
Query: 124 LREDK---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LR+D LA + P+T E+L + + A Y+ECS+ TQ+
Sbjct: 122 LRDDPSTIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQK 166
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 186 bits (472), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 86/160 (53%), Positives = 117/160 (73%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V+ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ P+T E+L + + A Y+ECS+ TQ+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQK 163
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 186 bits (472), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 86/160 (53%), Positives = 117/160 (73%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V+ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ P+T E+L + + A Y+ECS+ TQ+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQK 163
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 186 bits (471), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 86/160 (53%), Positives = 117/160 (73%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V+ G LGL+DTAGQED
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 125
Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ P+T E+L + + A Y+ECS+ TQ+
Sbjct: 126 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQK 165
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 186 bits (471), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 86/160 (53%), Positives = 117/160 (73%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V+ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ P+T E+L + + A Y+ECS+ TQ+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQR 163
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 186 bits (471), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 86/160 (53%), Positives = 117/160 (73%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V+ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ P+T E+L + + A Y+ECS+ TQ+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQR 163
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 185 bits (470), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/161 (54%), Positives = 118/161 (73%), Gaps = 4/161 (2%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 ---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LA + P+T E+L + + A Y+ECS+ TQ+
Sbjct: 124 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQK 163
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 185 bits (469), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 84/161 (52%), Positives = 121/161 (75%), Gaps = 2/161 (1%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE 67
+KCV VGDGAVGKTC+L+ Y ++ FP +Y+PTVFD+++ +V G LGL+DTAGQE
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 77
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
DY+RLRPLSY DVF++ FS+V+ AS++NV ++W+PEL+ Y+P VP +L+GT++DLR+D
Sbjct: 78 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137
Query: 128 KHYLADHPGL--VPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LA + P+ QG++L K+IGA Y+ECS+ TQ+
Sbjct: 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQK 178
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/160 (53%), Positives = 116/160 (72%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V+ G LGL DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ P+T E+L + + A Y+ECS+ TQ+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQK 163
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 184 bits (467), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 85/160 (53%), Positives = 116/160 (72%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+NKFP++Y+P VFDN++ V+ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ P+T E+L + + A Y+ECS+ TQ+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQK 163
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 184 bits (466), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 85/160 (53%), Positives = 116/160 (72%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+NK P++Y+PTVFDN++ V+ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ P+T E+L + + A Y+ECS+ TQ+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQK 163
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 183 bits (464), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 87/161 (54%), Positives = 118/161 (73%), Gaps = 4/161 (2%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V+ G LGL+DTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 ---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LA + P+T E+L + + A Y+ECS+ TQ+
Sbjct: 124 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQK 163
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 183 bits (464), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 87/161 (54%), Positives = 118/161 (73%), Gaps = 4/161 (2%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGD AVGKTC+LI YT+NKFP++Y+PTVFDN++ V+ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 ---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LA + P+T E+L + + A Y+ECS+ TQ+
Sbjct: 124 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQK 163
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 183 bits (464), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 87/161 (54%), Positives = 118/161 (73%), Gaps = 4/161 (2%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V+ G LGL+DTAG ED
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
Y+RLRPLSY DVF++ FS+VS +S+ENV +KW+PE+ H+ P P +LVGT++DLR+D
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 127
Query: 129 ---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
LA + P+T E+L + + A Y+ECS+ TQ+
Sbjct: 128 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQK 167
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 174 bits (442), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 114/164 (69%), Gaps = 2/164 (1%)
Query: 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
SA+ K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ +G V L LWDT
Sbjct: 5 SAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 64
Query: 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
AGQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K D
Sbjct: 65 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 124
Query: 124 LREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQ 165
LR D+H + + PV +G ++ +IGA Y+ECS+KT+
Sbjct: 125 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 168
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 174 bits (441), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 111/158 (70%), Gaps = 2/158 (1%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ +G V L LWDTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQ 165
+ + PV +G ++ +IGA Y+ECS+KT+
Sbjct: 129 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 174 bits (441), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 113/159 (71%), Gaps = 2/159 (1%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ +G V L LWDTAGQEDY
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K DLR+D+H
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEH 146
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ + PV + +G ++ +I A Y+ECS+KT++
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE 185
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 174 bits (441), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 114/166 (68%), Gaps = 2/166 (1%)
Query: 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLW 61
S A+ K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ +G V L LW
Sbjct: 1 GSMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALW 60
Query: 62 DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121
DTAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 61 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 120
Query: 122 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQ 165
DLR D+H + + PV +G ++ +IGA Y+ECS+KT+
Sbjct: 121 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 174 bits (441), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 111/158 (70%), Gaps = 2/158 (1%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ +G V L LWDTAGQEDY
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 127
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQ 165
+ + PV +G ++ +IGA Y+ECS+KT+
Sbjct: 128 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 165
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 174 bits (441), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 111/158 (70%), Gaps = 2/158 (1%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ +G V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQ 165
+ + PV +G ++ +IGA Y+ECS+KT+
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 174 bits (441), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 111/158 (70%), Gaps = 2/158 (1%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ +G V L LWDTAGQEDY
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 69
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQ 165
+ + PV +G ++ +IGA Y+ECS+KT+
Sbjct: 130 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 167
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 174 bits (440), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 113/159 (71%), Gaps = 2/159 (1%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ +G V L LWDTAGQEDY
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K DLR+D+H
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ + PV + +G ++ +I A Y+ECS+KT++
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE 185
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 174 bits (440), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 111/158 (70%), Gaps = 2/158 (1%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ +G V L LWDTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQ 165
+ + PV +G ++ +IGA Y+ECS+KT+
Sbjct: 129 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 172 bits (437), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 112/159 (70%), Gaps = 2/159 (1%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VGDGA GKTC+LI + ++FP Y+PTVF+N+ A++ +G V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K DLR+D+H
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ + PV + +G ++ +I A Y+ECS+KT++
Sbjct: 127 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE 165
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 172 bits (436), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 110/158 (69%), Gaps = 2/158 (1%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VGDGA GKTC+LI + ++FP Y+PTVF+N+ A++ +G V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQ 165
+ + PV +G ++ +IGA Y+ECS+KT+
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 172 bits (436), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 110/158 (69%), Gaps = 2/158 (1%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VGDGA GKTC+LI + ++FP Y+PTVF+N+ A++ +G V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQ 165
+ + PV +G ++ +IGA Y+ECS+KT+
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 172 bits (436), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 110/158 (69%), Gaps = 2/158 (1%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VGDGA GKTC+LI + ++FP Y+PTVF+N+ A++ +G V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQ 165
+ + PV +G ++ +IGA Y+ECS+KT+
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 172 bits (436), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 110/158 (69%), Gaps = 2/158 (1%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VGDGA GKTC+LI + ++FP Y+PTVF+N+ A++ +G V L LWDTAGQEDY
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQ 165
+ + PV +G ++ +IGA Y+ECS+KT+
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 162
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 172 bits (435), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 110/158 (69%), Gaps = 2/158 (1%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VGDGA GKTC+LI + ++FP Y+PTVF+N+ A++ +G V L LWDTAGQEDY
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQ 165
+ + PV +G ++ +IGA Y+ECS+KT+
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 162
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 171 bits (433), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 110/158 (69%), Gaps = 2/158 (1%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VGD A GKTC+LI ++ ++FP Y+PTVF+N+ A++ +G V L LWDTAGQEDY
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
+R RPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 67 DRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQ 165
+ + PV A+G ++ +IGA Y+ECS+KT+
Sbjct: 127 TARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTK 164
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 171 bits (432), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 113/165 (68%), Gaps = 2/165 (1%)
Query: 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWD 62
S A+ K V VGD A GKTC+LI ++ ++FP Y+PTVF+N+ A++ +G V L LWD
Sbjct: 1 SMAAIRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 60
Query: 63 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 122
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 61 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 120
Query: 123 DLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQ 165
DLR D+H + + PV +G ++ +IGA Y+ECS+KT+
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 165
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 170 bits (431), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 110/159 (69%), Gaps = 2/159 (1%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ +G V L LWDTAGQEDY
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
+RLRPLSY DV ++ FS+ S S EN+ +KW+PE++H+ P VP++LV K DLR D+H
Sbjct: 87 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQ 166
+ + PV T G + +I A Y+ECS+KT++
Sbjct: 147 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKE 185
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 170 bits (430), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 81/160 (50%), Positives = 114/160 (71%), Gaps = 2/160 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
+KCV VGDGAVGKT +++ YT+N +PT+YIPT FDNFSA V +G V L L DTAGQ++
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
+++LRPL Y D+F+L FS+VS +S++NV +KW+PE++ + P P++LVGT+ DLRED
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDV 140
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
L D PV + L ++I A+ YIECS+ TQ+
Sbjct: 141 KVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQK 180
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 169 bits (427), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 109/158 (68%), Gaps = 2/158 (1%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VGDGA GKTC+LI + ++FP Y+PTVF+N+ A++ +G V L LWDTAG EDY
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQ 165
+ + PV +G ++ +IGA Y+ECS+KT+
Sbjct: 130 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 167
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 167 bits (424), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 108/157 (68%), Gaps = 2/157 (1%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VGDGA GKTC+LI + +FP Y+PTVF+N+ A+V +G V L LWDTAGQEDY
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
+RLRPLSY ++V ++ FS+ S ENV +KWI E+ H+ GVP++LVG K+DLR D
Sbjct: 72 DRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQ 131
Query: 130 YLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT 164
+ G PVT+ +G+ + QIGA+ Y ECS+KT
Sbjct: 132 TIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKT 168
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 104/164 (63%), Gaps = 2/164 (1%)
Query: 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLW 61
A R +K V VGDG GKT +L+ + FP Y PTVF+ + N+ +G V+L +W
Sbjct: 28 APPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIW 87
Query: 62 DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121
DTAGQ+DY+RLRPL Y A V +L F + S S++N+ +W PE+ H+ VP+++VG K
Sbjct: 88 DTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCK 147
Query: 122 LDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSK 163
DLR+DK + GL PVT +G+E+ + +GA Y+ECS++
Sbjct: 148 TDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 149 bits (376), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 105/159 (66%), Gaps = 8/159 (5%)
Query: 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
+ + +K V VGDGAVGKTC+L+ ++ + PT Y+PTVF+NFS + + L LWDT
Sbjct: 18 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 77
Query: 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
AGQE+Y+RLRPLSY +DV +L F++ +R S++N+ KW PE++HY VLVG K+D
Sbjct: 78 AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 137
Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162
LR+D G VT +G++L +++G YIE SS
Sbjct: 138 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASS 168
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 149 bits (376), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 105/159 (66%), Gaps = 8/159 (5%)
Query: 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
+ + +K V VGDGAVGKTC+L+ ++ + PT Y+PTVF+NFS + + L LWDT
Sbjct: 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 78
Query: 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
AGQE+Y+RLRPLSY +DV +L F++ +R S++N+ KW PE++HY VLVG K+D
Sbjct: 79 AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138
Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162
LR+D G VT +G++L +++G YIE SS
Sbjct: 139 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASS 169
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 96/158 (60%), Gaps = 4/158 (2%)
Query: 9 IKC--VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
+KC V VGD GKT +L + + FP +Y+PTVF+N++A+ + + L LWDT+G
Sbjct: 22 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 81
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126
Y+ +RPLSY +D ++ F + + ++VLKKW E+Q + P ++LVG K DLR
Sbjct: 82 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 141
Query: 127 DKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSS 162
D L + + PV+ QG + KQIGA+ YIECS+
Sbjct: 142 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 99/162 (61%), Gaps = 4/162 (2%)
Query: 5 ASRFIKC--VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWD 62
+++ +KC V VGD GKT +L + + FP +Y+PTVF+N++A+ + + L LWD
Sbjct: 2 SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 61
Query: 63 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 122
T+G Y+ +RPLSY +D ++ F + + ++VLKKW E+Q + P ++LVG K
Sbjct: 62 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 121
Query: 123 DLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSS 162
DLR D L + + PV+ QG + KQIGA+ YIECS+
Sbjct: 122 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 96/158 (60%), Gaps = 4/158 (2%)
Query: 9 IKC--VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
+KC V VGD GKT +L + + FP +Y+PTVF+N++A+ + + L LWDT+G
Sbjct: 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 86
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126
Y+ +RPLSY +D ++ F + + ++VLKKW E+Q + P ++LVG K DLR
Sbjct: 87 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146
Query: 127 DKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSS 162
D L + + PV+ QG + KQIGA+ YIECS+
Sbjct: 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VGD GKT ML + +P Y+PTVF+N++A + E V L LWDT+G Y
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
+ +RPL Y +D +L F + + ++ LKKW E+ Y P V+L+G K DLR D
Sbjct: 73 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 132
Query: 130 YLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
L + H P++ QG + KQ+GA Y+E S+ T +
Sbjct: 133 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSE 171
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VGD GKT ML + +P Y+PTVF+N++A + E V L LWDT+G Y
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
+ +RPL Y +D +L F + + ++ LKKW E+ Y P V+L+G K DLR D
Sbjct: 89 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 148
Query: 130 YLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
L + H P++ QG + KQ+GA Y+E S+ T +
Sbjct: 149 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSE 187
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VGD GKT ML + +P Y+PTVF+N++A + E V L LWDT+G Y
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
+ +RPL Y +D +L F + + ++ LKKW E+ Y P V+L+G K DLR D
Sbjct: 72 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 131
Query: 130 YLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
L + H P++ QG + KQ+GA Y+E S+ T +
Sbjct: 132 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSE 170
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 14/159 (8%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
K + +GD VGK+C+L+ + + + YI T+ +F ++ E TV L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLR 125
E + + YRGA ++ + + R S++NV K+WI E+ Y+ V +LVG K DL
Sbjct: 69 ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNV-KQWIQEIDRYAMENVNKLLVGNKCDLV 127
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164
+ VT+ +G EL G +IE S+K
Sbjct: 128 SKR----------VVTSDEGRELADSHGIK-FIETSAKN 155
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 18/168 (10%)
Query: 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGL 60
S S +K + +GDG VGK+ ++ Y +NKF + T+ F + ++ +G V L +
Sbjct: 1 GSGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQI 60
Query: 61 WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPV 115
WDTAGQE + LR YRGAD +L FS+ R S+EN L W E +Y+ P
Sbjct: 61 WDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFEN-LGNWQKEFIYYADVKDPEHFPF 119
Query: 116 VLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
V++G K+D +ED+ VTT + + + G Y+E S+K
Sbjct: 120 VVLGNKVD-KEDRQ----------VTTEEAQTWCMENGDYPYLETSAK 156
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 13/150 (8%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
K V +G+G VGKT +++ Y NKF +I T+ +F + + G VNL +WDTAGQE
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRED 127
++ L P+ YR ++ +L + + S++ V K W+ EL+ + + +VG K+DL ++
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYY 157
+H V+ + E + +GA +Y
Sbjct: 127 RH----------VSIQEAESYAESVGAKHY 146
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 13/150 (8%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
K V +G+G VGKT +++ Y NKF +I T+ +F + + G VNL +WDTAGQE
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRED 127
++ L P+ YR ++ +L + + S++ V K W+ EL+ + + +VG K+DL ++
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYY 157
+H V+ + E + +GA +Y
Sbjct: 127 RH----------VSIQEAESYAESVGAKHY 146
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 13/150 (8%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
K V +G+G VGKT +++ Y NKF +I T+ +F + + G VNL +WDTAGQE
Sbjct: 22 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRED 127
++ L P+ YR ++ +L + + S++ V K W+ EL+ + + +VG K+DL ++
Sbjct: 82 FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 140
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYY 157
+H V+ + E + +GA +Y
Sbjct: 141 RH----------VSIQEAESYAESVGAKHY 160
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 15/161 (9%)
Query: 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDT 63
S +K + +GD VGK+C+L+ + +KF +I T+ +F V G V L LWDT
Sbjct: 4 GSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 63
Query: 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKL 122
AGQE + + YRGA +L + + ++ N+ K+W + +H + ++LVG K
Sbjct: 64 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKS 122
Query: 123 DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
D+ VT QGE L K++G +IE S+K
Sbjct: 123 DMETR-----------VVTADQGEALAKELGIP-FIESSAK 151
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 19/169 (11%)
Query: 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLG 59
MA +S F K + +GDG VGK+ ++ Y +NKF T T+ F + ++ +G V +
Sbjct: 1 MAGKSSLF-KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ 59
Query: 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVP 114
+WDTAGQE + LR YRG+D +L FS+ S++N L W E +Y+ P
Sbjct: 60 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFP 118
Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
V++G K+D+ E + V+T + + + G Y E S+K
Sbjct: 119 FVILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAK 156
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 19/169 (11%)
Query: 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLG 59
MA +S F K + +GDG VGK+ ++ Y +NKF T T+ F + ++ +G V +
Sbjct: 3 MAGKSSLF-KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ 61
Query: 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVP 114
+WDTAGQE + LR YRG+D +L FS+ S++N L W E +Y+ P
Sbjct: 62 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFP 120
Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
V++G K+D+ E + V+T + + + G Y E S+K
Sbjct: 121 FVILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAK 158
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 15/164 (9%)
Query: 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGL 60
S +K + +GD VGK+C+L+ + +KF +I T+ +F V G V L L
Sbjct: 14 GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQL 73
Query: 61 WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVG 119
WDTAGQE + + YRGA +L + + ++ N+ K+W + +H + ++LVG
Sbjct: 74 WDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVG 132
Query: 120 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
K D+ VT QGE L K++G +IE S+K
Sbjct: 133 NKSDMETR-----------VVTADQGEALAKELGIP-FIESSAK 164
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 82/172 (47%), Gaps = 25/172 (14%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV---AEGTT--------V 56
IK + +GD VGKT L YT NKF +I TV +F V A+G V
Sbjct: 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 57 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVP 114
+L LWDTAGQE + L +R A F+L F L S+ S+ NV + W+ +LQ Y
Sbjct: 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 143
Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+VL+G K DL P V Q EL + G Y+ E S+ T Q
Sbjct: 144 IVLIGNKADL----------PDQREVNERQARELADKYGIPYF-ETSAATGQ 184
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
K + +GD VGK+C+L+ + + + YI T+ +F + +G T+ L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
E + + YRGA ++ + + + SY NV K+W+ E+ Y S V +LVG K DL
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 126 EDK 128
K
Sbjct: 128 TKK 130
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
K + +GD VGK+C+L+ + + + YI T+ +F + +G T+ L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
E + + YRGA ++ + + + SY NV K+W+ E+ Y S V +LVG K DL
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 126 EDK 128
K
Sbjct: 128 TKK 130
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ 66
K V +GD VGK+ +L +T N+F + T+ F+ ++ +G T+ +WDTAGQ
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLR 125
E Y R+ YRGA +L + + +YENV ++W+ EL+ H + ++LVG K DLR
Sbjct: 65 ERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 123
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 15/157 (9%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQE 67
+K + +GD VGK+C+L+ + +KF +I T+ +F V G V L +WDTAGQE
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLRE 126
+ + YRGA +L + + ++ N+ K+W + +H + ++LVG K D+
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMET 122
Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
VT QGE L K++G +IE S+K
Sbjct: 123 R-----------VVTADQGEALAKELGIP-FIESSAK 147
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 20/170 (11%)
Query: 1 MASSASRFI--KCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSANVVAEGTT 55
MA++ ++ I K V +GD GK+ +++ + ++F I F FS + T
Sbjct: 3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAF--FSQTLAVNDAT 60
Query: 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVP 114
V +WDTAGQE Y+ L P+ YRGA ++ F + ++AS+E KKW+ ELQ +P +
Sbjct: 61 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMV 119
Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164
+ L G K DL + + TA+ + Q +++E S+KT
Sbjct: 120 MALAGNKSDLLDARK-----------VTAEDAQTYAQENGLFFMETSAKT 158
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 83/172 (48%), Gaps = 25/172 (14%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV------AEGTT-----V 56
IK + +GD VGKT L YT NKF +I TV +F V A+G + V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 57 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVP 114
+L LWDTAG E + L +R A F+L F L S+ S+ NV + W+ +LQ Y
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+VL+G K DL P V Q EL ++ G Y+ E S+ T Q
Sbjct: 130 IVLIGNKADL----------PDQREVNERQARELAEKYGIPYF-ETSAATGQ 170
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 18/168 (10%)
Query: 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGL 60
++ S K + +GDG VGK+ ++ Y +NKF + T+ F + ++ +G V + +
Sbjct: 5 SAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQI 64
Query: 61 WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPV 115
WDTAGQE + LR YRG+D +L FS+ S++N L W E +Y+ P
Sbjct: 65 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPF 123
Query: 116 VLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
V++G K D++E + V+T + + K G Y E S+K
Sbjct: 124 VILGNKTDIKERQ-----------VSTEEAQAWCKDNGDYPYFETSAK 160
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 14/156 (8%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQED 68
K + +GD VGK+C+L+ + + + YI T+ +F + +G T+ L +WDTAGQE
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRED 127
+ + YRGA ++ + + + S+ NV K+W+ E+ Y S V +LVG K DL
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 119
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
K +V TTA+ E +G ++E S+K
Sbjct: 120 K--------VVDYTTAK--EFADSLGIP-FLETSAK 144
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 14/158 (8%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
K + +GD VGK+C+L+ + + + YI T+ +F + +G T+ L +WDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
E + + YRGA ++ + + + S+ NV K+W+ E+ Y S V +LVG K DL
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
K +V TTA+ E +G ++E S+K
Sbjct: 125 TKK--------VVDYTTAK--EFADSLGIP-FLETSAK 151
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 14/158 (8%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
K + +GD VGK+C+L+ + + + YI T+ +F + +G T+ L +WDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
E + + YRGA ++ + + + S+ NV K+W+ E+ Y S V +LVG K DL
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
K +V TTA+ E +G ++E S+K
Sbjct: 125 TKK--------VVDYTTAK--EFADSLGIP-FLETSAK 151
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 14/165 (8%)
Query: 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLG 59
MA + K + +GD VGKTC+L ++ + F + +I T+ +F + +G + L
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60
Query: 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLV 118
+WDTAGQE + + YRGA +L + + + S++N+ + WI + +H S V +++
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMIL 119
Query: 119 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
G K D+ + + V+ +GE+L G ++E S+K
Sbjct: 120 GNKCDVNDKRQ----------VSKERGEKLALDYGIK-FMETSAK 153
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLG 59
M S K + +G+ VGK+C+L+ ++ + + DYI T+ +F V +G TV L
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG-VPVVLV 118
+WDTAGQE + + YRG+ ++ + + + S+ N +K W+ E+ Y+ V +LV
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLV 119
Query: 119 GTKLDLREDK 128
G K DL++ +
Sbjct: 120 GNKCDLKDKR 129
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLG 59
M S K + +G+ VGK+C+L+ ++ + + DYI T+ +F V +G TV L
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG-VPVVLV 118
+WDTAGQE + + YRG+ ++ + + + S+ N +K W+ E+ Y+ V +LV
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLV 119
Query: 119 GTKLDLREDK 128
G K DL++ +
Sbjct: 120 GNKCDLKDKR 129
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 14/158 (8%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
K + +GD VGK+C+L+ + + + YI T+ +F + +G T+ L +WDTAGQ
Sbjct: 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
E + + YRGA ++ + + + S+ NV K+W+ E+ Y S V +LVG K DL
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
K +V TTA+ E +G ++E S+K
Sbjct: 135 TKK--------VVDYTTAK--EFADSLGIP-FLETSAK 161
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 14/158 (8%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
K + +GD VGK+C+L+ + + + YI T+ +F + +G T+ L +WDTAGQ
Sbjct: 25 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
E + + YRGA ++ + + + S+ NV K+W+ E+ Y S V +LVG K DL
Sbjct: 85 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 143
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
K +V TTA+ E +G ++E S+K
Sbjct: 144 TKK--------VVDYTTAK--EFADSLGIP-FLETSAK 170
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 14/158 (8%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
K + +GD VGK+C+L+ + + + YI T+ +F + +G T+ L +WDTAGQ
Sbjct: 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
E + + YRGA ++ + + + S+ NV K+W+ E+ Y S V +LVG K DL
Sbjct: 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 151
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
K +V TTA+ E +G ++E S+K
Sbjct: 152 TKK--------VVDYTTAK--EFADSLGIP-FLETSAK 178
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 82/172 (47%), Gaps = 25/172 (14%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV------AEGTT-----V 56
IK + +GD VGKT L YT NKF +I TV +F V A+G + V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 57 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVP 114
+L LWDTAG E + L +R A F+L F L S+ S+ NV + W +LQ Y
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+VL+G K DL P V Q EL ++ G Y+ E S+ T Q
Sbjct: 130 IVLIGNKADL----------PDQREVNERQARELAEKYGIPYF-ETSAATGQ 170
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 15/156 (9%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQED 68
K + +GD VGK+C+L+ + +KF +I T+ +F V G V L LWDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLRED 127
+ + YRGA +L + + ++ N+ K+W + +H + ++LVG K D
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDXETR 123
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
VT QGE L K++G +IE S+K
Sbjct: 124 -----------VVTADQGEALAKELGIP-FIESSAK 147
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 13/158 (8%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K + VG G VGK+ + + + ++F DY PT D++ VV +G V + + DTAG EDY
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+R +R + F+L FS+ S+ ++ I ++ +P+++VG K DL E
Sbjct: 65 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 124
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165
+ VPV A+ + + Y+E S+KT+
Sbjct: 125 RQ--------VPVEEARS---KAEEWGVQYVETSAKTR 151
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 15/159 (9%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VG VGK+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 83/172 (48%), Gaps = 25/172 (14%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV------AEGTT-----V 56
IK + +GD VGKT L YT NKF +I TV +F V A+G + V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 57 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVP 114
+L LWDTAG E + L +R A F+L F L S+ S+ NV + W+ +LQ Y
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+VL+G K DL P V Q EL ++ G Y+ E S+ T Q
Sbjct: 130 IVLIGNKADL----------PDQREVNERQARELAEKYGIPYF-ETSAATGQ 170
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 85/159 (53%), Gaps = 15/159 (9%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQ 66
K + VGD VGKTC+L+ + F +I TV +F V+ +G V L +WDTAGQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLR 125
E + + YR A +L + + ++AS++N+ + W+ E+ Y+ V ++L+G K+D
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSA 129
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164
++ V GE+L K+ G ++E S+KT
Sbjct: 130 HER----------VVKREDGEKLAKEYGLP-FMETSAKT 157
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 13/158 (8%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K + VG G VGK+ + + + ++F DY PT D++ VV +G V + + DTAG EDY
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+R +R + F+L FS+ S+ ++ I ++ +P+++VG K DL E
Sbjct: 69 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 128
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165
+ VPV A+ + + Y+E S+KT+
Sbjct: 129 RQ--------VPVEEARS---KAEEWGVQYVETSAKTR 155
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 14/158 (8%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
K + +GD VGK+C+L+ + + + YI T+ +F + +G T+ L +WDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
E + + YRGA ++ + + + S+ NV K+W+ E+ Y S V +LVG K DL
Sbjct: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGIKCDLT 126
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
K +V TTA+ E +G ++E S+K
Sbjct: 127 TKK--------VVDYTTAK--EFADSLGIP-FLETSAK 153
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 14/158 (8%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
K + +GD VGK C+L+ + + + YI T+ +F + +G T+ L +WDTAGQ
Sbjct: 16 LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
E + + YRGA ++ + + + S+ NV K+W+ E+ Y S V +LVG K DL
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
K +V TTA+ E +G ++E S+K
Sbjct: 135 TKK--------VVDYTTAK--EFADSLGIP-FLETSAK 161
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 82/172 (47%), Gaps = 25/172 (14%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV------AEGTT-----V 56
IK + +GD VGKT L YT NKF +I TV +F V A+G + V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 57 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVP 114
+L LWDTAG E + L +R A F+L F L S+ S+ NV + W +LQ Y
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
+VL+G K DL P V Q EL ++ G Y+ E S+ T Q
Sbjct: 130 IVLIGNKADL----------PDQREVNERQARELAEKYGIPYF-ETSAATGQ 170
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 15/159 (9%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VG VGK+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 15/156 (9%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQED 68
K + +GD VGK+C+L+ + +KF +I T+ +F V G V L +WDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLRED 127
+ + YRGA +L + + ++ N+ K+W + +H + ++LVG K D
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDXETR 123
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
VT QGE L K++G +IE S+K
Sbjct: 124 -----------VVTADQGEALAKELGIP-FIESSAK 147
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 85/159 (53%), Gaps = 15/159 (9%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VG VGK+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL--- 121
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
P V T Q ++L + G +IE S+KT+Q
Sbjct: 122 -------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQ 151
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 85/159 (53%), Gaps = 15/159 (9%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VG VGK+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL--- 121
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
P V T Q ++L + G +IE S+KT+Q
Sbjct: 122 -------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQ 151
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 14/157 (8%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQE 67
K + +G+ +VGKT L Y + F ++ TV +F V V L +WDTAGQE
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLRE 126
Y + YRGA F+L + + + S+ N ++ W +++ YS V+LVG K D+ E
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142
Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
++ +VP T +G+ L +Q+G ++ E S+K
Sbjct: 143 ER--------VVP--TEKGQLLAEQLGFDFF-EASAK 168
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 15/159 (9%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VG VGK+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 10/145 (6%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ 66
K V +GD VGK+ +L +T N+F + T+ F+ ++ +G T+ +WDTAGQ
Sbjct: 20 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLR 125
E Y + YRGA +L + + +YENV ++W+ EL+ H + ++LVG K DLR
Sbjct: 80 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 138
Query: 126 -------EDKHYLADHPGLVPVTTA 143
++ A+ GL + T+
Sbjct: 139 HLRAVPTDEARAFAEKNGLSFIETS 163
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQE 67
IK V VG+GAVGK+ M+ Y F DY T+ D + V L LWDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+++ + YRGA VL FS R S+E + W ++ +P LV K+DL +D
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFE-AISSWREKVVAEVGDIPTALVQNKIDLLDD 124
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 10/148 (6%)
Query: 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDT 63
S K + +GD VGK+C+L+ +T +F + T+ F A +V +G + L +WDT
Sbjct: 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 77
Query: 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKL 122
AGQE + + YRGA +L + + R ++ N L W+ + QH S + ++L+G K
Sbjct: 78 AGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLTSWLEDARQHSSSNMVIMLIGNKS 136
Query: 123 DL-------REDKHYLADHPGLVPVTTA 143
DL RE+ A GL+ + T+
Sbjct: 137 DLESRRDVKREEGEAFAREHGLIFMETS 164
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 10/145 (6%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ 66
K V +GD VGK+ +L +T N+F + T+ F+ ++ +G T+ +WDTAGQ
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLR 125
E Y + YRGA +L + + +YENV ++W+ EL+ H + ++LVG K DLR
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 126 -------EDKHYLADHPGLVPVTTA 143
++ A+ GL + T+
Sbjct: 148 HLRAVPTDEARAFAEKNGLSFIETS 172
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
K + +G+ VGK+C+L+ ++ + + DYI T+ +F V +G TV L +WDTAGQ
Sbjct: 21 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG-VPVVLVGTKLDLR 125
E + + YRG+ ++ + + + S+ N +K W+ E+ Y+ V +LVG K DL+
Sbjct: 81 ERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLVGNKCDLK 139
Query: 126 EDK 128
+ +
Sbjct: 140 DKR 142
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 83/156 (53%), Gaps = 14/156 (8%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQED 68
K + +GD VGKTC+L ++ + F + +I T+ +F + +G + L +WDTAGQE
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLRED 127
+ + YRGA +L + + + S++N+ + WI + +H S V +++G K D+ +
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
+ V+ +GE+L G ++E S+K
Sbjct: 127 RQ----------VSKERGEKLALDYGIK-FMETSAK 151
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 15/159 (9%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K V VG VGK+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ +R R + F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 121 --------AGRTVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Query: 14 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRL 72
+GD VGK+C+L+ + + + YI T+ +F + +G T+ L +WDTAGQE + +
Sbjct: 4 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 63
Query: 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDL 124
YRGA ++ + + + S+ NV K+W+ E+ Y S V +LVG K DL
Sbjct: 64 TSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 78/163 (47%), Gaps = 24/163 (14%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-------AN----VVAEGTTV 56
IK + +GD VGKT +L YT KF + +I TV +F AN V G +
Sbjct: 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 57 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH--YSPGVP 114
+L LWDTAG E + L +R A F+L F L + S+ NV + WI +LQ YS
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPD 129
Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 157
+VL G K DL + + V + EL ++ G Y+
Sbjct: 130 IVLCGNKSDLEDQR----------AVKEEEARELAEKYGIPYF 162
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 17/160 (10%)
Query: 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTV-NL 58
M+S +K + +GD VGKT ++ Y ++K+ Y T+ +F + V +G V +
Sbjct: 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 59 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHY---SPGV- 113
+WDTAGQE + L YRGAD VL + + + +S+EN+ K W E L H SP
Sbjct: 61 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETF 119
Query: 114 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153
P V++G K+D E K +++ +EL K +G
Sbjct: 120 PFVILGNKIDAEESKKIVSEKS---------AQELAKSLG 150
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 14/158 (8%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
K V +G+ VGKTC++ +T FP T+ +F V G V L +WDTAGQ
Sbjct: 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
E + + YR A+ +L + + S+ L +W+ E++ Y S V VLVG K+DL
Sbjct: 86 ERFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYASNKVITVLVGNKIDLA 144
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
E + V+ + EE + YY+E S+K
Sbjct: 145 ERRE----------VSQQRAEEF-SEAQDMYYLETSAK 171
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLG 59
+ S+ + K + +GD VGK+C+L+ +T +F + T+ F A ++ +G + L
Sbjct: 3 LGSAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQ 62
Query: 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLV 118
+WDTAGQE + + YRGA +L + + R ++ N L W+ + QH + + ++L+
Sbjct: 63 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTF-NHLTTWLEDARQHSNSNMVIMLI 121
Query: 119 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164
G K DL + V +GE ++ G ++E S+KT
Sbjct: 122 GNKSDLESRR----------EVKKEEGEAFAREHGL-IFMETSAKT 156
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 14/158 (8%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K + VG G VGK+ + + + ++F DY PT D++ VV +G V + + DTAGQEDY
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+R +R + F+ FS+ S+ ++ I ++ VP +LVG K DL ED
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDL-ED 137
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165
K V V A+ R + Y+E S+KT+
Sbjct: 138 KRQ-------VSVEEAKN---RAEQWNVNYVETSAKTR 165
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 14/158 (8%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K + VG G VGK+ + + + ++F DY PT D++ VV +G V + + DTAGQEDY
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+R +R + F+ FS+ S+ ++ I ++ VP +LVG K DL ED
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDL-ED 125
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165
K V V A+ R + Y+E S+KT+
Sbjct: 126 KRQ-------VSVEEAKN---RAEQWNVNYVETSAKTR 153
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 10/145 (6%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ 66
K V +GD VGK+ +L +T N+F + T+ F+ ++ +G T+ +WDTAG
Sbjct: 8 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLR 125
E Y + YRGA +L + + +YENV ++W+ EL+ H + ++LVG K DLR
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 126
Query: 126 -------EDKHYLADHPGLVPVTTA 143
++ A+ GL + T+
Sbjct: 127 HLRAVPTDEARAFAEKNGLSFIETS 151
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 9/156 (5%)
Query: 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLG 59
MA K + +GD VGK+ +L+ + N F YI T+ +F V G V L
Sbjct: 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 61
Query: 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVG 119
+WDTAGQE + + YRG ++ + + S S+ NV K+W+ E+ V +LVG
Sbjct: 62 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVG 120
Query: 120 TKLD-------LREDKHYLADHPGLVPVTTAQGEEL 148
K D ED + A G+ T+ E +
Sbjct: 121 NKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENV 156
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 11/146 (7%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
K V +G+ AVGK+ +++ + +F T+ F + V + TTV +WDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL-- 124
Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G K DL
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 125 ------REDKHYLADHPGLVPVTTAQ 144
+E + Y D+ L T+A+
Sbjct: 127 KRAVDFQEAQSYADDNSLLFMETSAK 152
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 14/158 (8%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K + VG G VGK+ + + + ++F DY PT D++ VV +G V + + DTAGQEDY
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+R +R + F+ FS+ S+ ++ I ++ VP +LVG K DL ED
Sbjct: 76 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDL-ED 133
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165
K V V A+ R + Y+E S+KT+
Sbjct: 134 KRQ-------VSVEEAKN---RAEQWNVNYVETSAKTR 161
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 11/146 (7%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
K V +G+ AVGK+ +++ + +F T+ F + V + TTV +WDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL-- 124
Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 ------REDKHYLADHPGLVPVTTAQ 144
+E + Y D+ L T+A+
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAK 151
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 73/144 (50%), Gaps = 10/144 (6%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTT-VNLGLWDTAGQE 67
K V +G+ VGKT +L +T N+F D T+ FS V GT V +WDTAG E
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLR- 125
Y + YRGA +L F L +Y V+++W+ EL H + V+LVG K DL
Sbjct: 71 RYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQ 129
Query: 126 ------EDKHYLADHPGLVPVTTA 143
E+ A++ GL+ + T+
Sbjct: 130 AREVPTEEARMFAENNGLLFLETS 153
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 10/145 (6%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ 66
K V +GD VGK+ +L +T N+F + T+ F+ ++ +G T+ +WDTAG
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLR 125
E Y + YRGA +L + + +YENV ++W+ EL+ H + ++LVG K DLR
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 126 -------EDKHYLADHPGLVPVTTA 143
++ A+ GL + T+
Sbjct: 148 HLRAVPTDEARAFAEKNGLSFIETS 172
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 13/153 (8%)
Query: 4 SASRF--IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGL 60
SAS+ K V +G+ AVGK+ +++ + +F T+ F + +V + TTV +
Sbjct: 2 SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 61 WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVG 119
WDTAGQE Y+ L P+ YRGA ++ + + ++ ++ K W+ ELQ SP + + L G
Sbjct: 62 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARA-KTWVKELQRQASPSIVIALAG 120
Query: 120 TKLDL--------REDKHYLADHPGLVPVTTAQ 144
K DL E + Y D+ L T+A+
Sbjct: 121 NKADLANKRMVEYEEAQAYADDNSLLFMETSAK 153
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 10/145 (6%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ 66
K V +GD VGK+ +L +T N+F + T+ F+ ++ +G T+ +WDTAG
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLR 125
E Y + YRGA +L + + +YENV ++W+ EL+ H + + LVG K DLR
Sbjct: 65 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 123
Query: 126 -------EDKHYLADHPGLVPVTTA 143
++ A+ GL + T+
Sbjct: 124 HLRAVPTDEARAFAEKNGLSFIETS 148
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 73/144 (50%), Gaps = 10/144 (6%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTT-VNLGLWDTAGQE 67
K V +G+ VGKT +L +T N+F D T+ FS V GT V +WDTAG E
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLR- 125
Y + YRGA +L F L +Y V+++W+ EL H + V+LVG K DL
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQ 144
Query: 126 ------EDKHYLADHPGLVPVTTA 143
E+ A++ GL+ + T+
Sbjct: 145 AREVPTEEARMFAENNGLLFLETS 168
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 10/145 (6%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ 66
K V +GD VGK+ +L +T N+F + T+ F+ ++ +G T+ +WDTAG
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLR 125
E Y + YRGA +L + + +YENV ++W+ EL+ H + + LVG K DLR
Sbjct: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 129
Query: 126 -------EDKHYLADHPGLVPVTTA 143
++ A+ GL + T+
Sbjct: 130 HLRAVPTDEARAFAEKNGLSFIETS 154
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 14/158 (8%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K + VG G VGK+ + + + ++F DY PT D++ VV +G V + + DTAGQEDY
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+R +R + F+ FS+ S+ ++ I ++ VP +LVG K DL ED
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDL-ED 123
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165
K V V A+ + + Y+E S+KT+
Sbjct: 124 KRQ-------VSVEEAKNRADQWNVN---YVETSAKTR 151
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 14/157 (8%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTT-VNLGLWDTAGQE 67
K + +G+ +VGKT L Y + F ++ TV +F + + L +WDTAGQE
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLRE 126
Y + YRGA F+L + + + S+ N ++ W +++ YS V+LVG K D+ +
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 124
Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
++ V++ +G +L +G ++ E S+K
Sbjct: 125 ER----------VVSSERGRQLADHLGFEFF-EASAK 150
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
K V +G+ AVGK+ +++ + +F T+ F + V + TTV +WDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL-- 124
Y+ L P YRGA ++ + + + S+ K W+ ELQ SP + + L G K DL
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 125 ------REDKHYLADHPGLVPVTTAQ 144
+E + Y D+ L T+A+
Sbjct: 127 KRAVDFQEAQSYADDNSLLFXETSAK 152
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 11/146 (7%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
K V +G+ AVGK+ +++ + +F T+ F + V + TTV +WDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL-- 124
Y+ L P+ YRGA ++ + + + ++ K W+ ELQ SP + + L G K DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 125 ------REDKHYLADHPGLVPVTTAQ 144
+E + Y D+ L T+A+
Sbjct: 125 KRAVEFQEAQAYADDNSLLFMETSAK 150
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 11/146 (7%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
K V +G+ AVGK+ +++ + +F T+ F + V + TTV +WDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL-- 124
Y+ L P+ YRGA ++ + + + ++ K W+ ELQ SP + + L G K DL
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADLAS 122
Query: 125 ------REDKHYLADHPGLVPVTTAQ 144
+E + Y D+ L T+A+
Sbjct: 123 KRAVEFQEAQAYADDNSLLFMETSAK 148
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I + + F TDY PT+ D+++ V + L + DTAGQE++ +R R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 81 DVFVLAFSLVSRASYENVLK--KWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+L FS+ R S+E + K + I ++ P++L+G K DL DH
Sbjct: 78 EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDE-FPMILIGNKADL--------DHQR-- 126
Query: 139 PVTTAQGEELRKQIGASYYIECSSK 163
VT +G++L +Q+ + Y+E S+K
Sbjct: 127 QVTQEEGQQLARQLKVT-YMEASAK 150
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 11/158 (6%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
IK V +G+ AVGK+ +++ + SN F + PT+ F + V TV +WDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLRE 126
+ L P YR A ++ + + S+ + W+ EL + S + + LVG K+D +
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQ 122
Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164
+ G V +GE+L ++ G ++ E S+KT
Sbjct: 123 E-------GGERKVAREEGEKLAEEKGLLFF-ETSAKT 152
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQE 67
++ + +G VGKT ++ +T + F TV +F V G + L +WDTAGQE
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRE 126
+N + YR A +L + + + ++++ L KW+ + Y S ++LVG KLD
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDD-LPKWMKMIDKYASEDAELLLVGNKLDCET 145
Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
D+ +T QGE+ +QI + E S+K
Sbjct: 146 DRE----------ITRQQGEKFAQQITGMRFCEASAK 172
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
K V +G+ VGK+ +++ + +F T+ F + V + TTV +WDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL-- 124
Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 ------REDKHYLADHPGLVPVTTAQ 144
+E + Y D+ L T+A+
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAK 151
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
K V +G+ VGK+ +++ + +F T+ F + V + TTV +WDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL-- 124
Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 ------REDKHYLADHPGLVPVTTAQ 144
+E + Y D+ L T+A+
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAK 151
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQ 66
K + +G GK+C+L + NKF D T+ F + VV G TV L +WDTAGQ
Sbjct: 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
E + + YRGA +L + + SR +Y N L W+ + + SP + V+L G K DL
Sbjct: 85 ERFRSVTRSYYRGAAGALLVYDITSRETY-NSLAAWLTDARTLASPNIVVILCGNKKDLD 143
Query: 126 EDKH 129
++
Sbjct: 144 PERE 147
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
K V +G+ VGK+ +++ + +F T+ F + V + TTV +WDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL-- 124
Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 ------REDKHYLADHPGLVPVTTAQ 144
+E + Y D+ L T+A+
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAK 151
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
K V +G+ VGK+ +++ + +F T+ F + V + TTV +WDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL-- 124
Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 ------REDKHYLADHPGLVPVTTAQ 144
+E + Y D+ L T+A+
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAK 151
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 14/161 (8%)
Query: 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTA 64
S K + +GD VGK+C+L +T KF D T+ F ++ G + L +WDTA
Sbjct: 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 72
Query: 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLD 123
GQE + + YRGA ++ + + R++Y N L W+ + ++ + P ++L+G K D
Sbjct: 73 GQERFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIILIGNKAD 131
Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164
L + VT + ++ ++ G ++E S+KT
Sbjct: 132 LEAQR----------DVTYEEAKQFAEENGL-LFLEASAKT 161
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
K V +G+ VGK+ +++ + +F T+ F + V + TTV +WDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL-- 124
Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 ------REDKHYLADHPGLVPVTTAQ 144
+E + Y D+ L T+A+
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAK 151
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 14/163 (8%)
Query: 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL-WD 62
SA R +K +GD VGK+ ++ + + F + PT+ +F V G ++ L WD
Sbjct: 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 63 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTK 121
TAGQE ++ L P+ YRG+ V+ + + + S+ LKKW+ EL+ + P + + + G K
Sbjct: 79 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSF-YTLKKWVKELKEHGPENIVMAIAGNK 137
Query: 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164
DL + + VP+ A+ E + IGA +E S+K
Sbjct: 138 CDLSDIRE--------VPLKDAK--EYAESIGA-IVVETSAKN 169
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 14/157 (8%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQED 68
K V +G+ +VGKT ++ + + F Y T+ D S + E TV L LWDTAGQE
Sbjct: 4 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLRED 127
+ L P R + V V+ + + + S++ KWI +++ V ++LVG K DL +
Sbjct: 64 FRSLIPSYIRDSTVAVVVYDITNLNSFQQT-SKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164
+ +T +GE+ K++ +IE S+KT
Sbjct: 123 RQ----------ITIEEGEQRAKELSV-MFIETSAKT 148
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 14/158 (8%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K + VG G VGK+ + + + ++F DY PT D++ VV +G V + + DTAG EDY
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+R +R + F+ FS+ S+ ++ I ++ VP +LVG K DL ED
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDL-ED 125
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165
K V V A+ R + Y+E S+KT+
Sbjct: 126 KRQ-------VSVEEAKN---RAEQWNVNYVETSAKTR 153
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
K V +G+ AVGK+ +++ + +F T+ F + V + TTV +WDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL-- 124
Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G K DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 124
Query: 125 ------REDKHYLADHPGLVPVTTAQ 144
+E + Y D+ L T+A+
Sbjct: 125 KRAVDFQEAQSYADDNSLLFMETSAK 150
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWD 62
S SR K + +GD VGKTC+ + + +FP T+ +F V +G + + LWD
Sbjct: 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 75
Query: 63 TAGQEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVG 119
TAGQE + + + YR V + + + AS+ + L WI E + + + +P +LVG
Sbjct: 76 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHS-LPAWIEECKQHLLANDIPRILVG 134
Query: 120 TKLDLR 125
K DLR
Sbjct: 135 NKCDLR 140
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLG 59
M S +K + +GD VGKT ++ Y + KF Y T+ +F + V+ + V +
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSP----GVP 114
+WDTAGQE + L YRGAD VL F + + +++ L W E L SP P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFP 119
Query: 115 VVLVGTKLDL 124
V++G K+DL
Sbjct: 120 FVVLGNKIDL 129
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 14/159 (8%)
Query: 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAG 65
R K V +G+ +VGKT ++ + + F Y T+ D S + E TV L LWDTAG
Sbjct: 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72
Query: 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL 124
QE + L P R + V V+ + + + S+ KWI +++ V ++LVG K DL
Sbjct: 73 QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDL 131
Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
+ + V+T +GE K++ +IE S+K
Sbjct: 132 SDKRQ----------VSTEEGERKAKELNV-MFIETSAK 159
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 68/138 (49%), Gaps = 10/138 (7%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQE 67
K + +G+ +VGKT L Y + F ++ TV +F V + L +WDTAGQE
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLR- 125
Y + YRGA F+L + + ++ S+ V + W +++ YS V+LVG K DL
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLED 141
Query: 126 ------EDKHYLADHPGL 137
ED LAD G
Sbjct: 142 ERVVPAEDGRRLADDLGF 159
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLG 59
M S +K + +GD VGKT ++ Y + KF Y T+ +F + V+ + V +
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSP----GVP 114
+WDTAGQE + L YRGAD VL F + + +++ L W E L SP P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFP 119
Query: 115 VVLVGTKLDL 124
V++G K+DL
Sbjct: 120 FVVLGNKIDL 129
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 81 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQ 155
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 81 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQ 155
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 83 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 130
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 131 TVESRQAQDLARSYGIP-YIETSAKTRQ 157
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
K V +G+ AVGK+ +++ + +F T+ F + V + TTV +WDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL-- 124
Y+ L P+ YRGA ++ + + + ++ K W+ ELQ SP + + L G K DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 125 ------REDKHYLADHPGLVPVTTAQ 144
+E + Y D+ L T+A+
Sbjct: 125 KRAVEFQEAQAYADDNSLLFMETSAK 150
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL P
Sbjct: 77 EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT 125
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V T Q ++L + G +IE S+KT+Q
Sbjct: 126 -VDTKQAQDLARSYGIP-FIETSAKTRQ 151
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL P
Sbjct: 77 EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT 125
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V T Q ++L + G +IE S+KT+Q
Sbjct: 126 -VDTKQAQDLARSYGIP-FIETSAKTRQ 151
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 14/157 (8%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTT-VNLGLWDTAGQE 67
K + +G+ +VGKT L Y + F ++ TV +F + + L +WDTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLRE 126
Y + YRGA F+L + + + S+ N ++ W +++ YS V+LVG K D +
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDXED 127
Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
++ V++ +G +L +G ++ E S+K
Sbjct: 128 ER----------VVSSERGRQLADHLGFEFF-EASAK 153
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 14/161 (8%)
Query: 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTA 64
S K + +GD VGK+C+L +T KF D T+ F ++ G + L +WDTA
Sbjct: 28 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 87
Query: 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLD 123
GQ + + YRGA ++ + + R++Y N L W+ + ++ + P ++L+G K D
Sbjct: 88 GQGRFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIILIGNKAD 146
Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164
L + VT + ++ ++ G ++E S+KT
Sbjct: 147 LEAQR----------DVTYEEAKQFAEENGL-LFLEASAKT 176
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
K V +GD VGK+ +L +T N+F D T+ F+ + EG + +WDTAGQ
Sbjct: 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDL 124
E Y + YRGA ++ + + +SYEN W+ EL ++ V V L+G K DL
Sbjct: 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDL 130
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 17/166 (10%)
Query: 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
MA SA +K G VGK+ +++ + + +F +Y PT+ + + V++ +
Sbjct: 23 MAKSAE--VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEI 80
Query: 61 WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 118
DTAGQED + R R + FVL + + R S+E V LK + E++ V ++LV
Sbjct: 81 LDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILV 138
Query: 119 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164
G K DL DH V+T +GE+L ++ ++Y ECS+ T
Sbjct: 139 GNKADL--------DHSR--QVSTEEGEKLATELACAFY-ECSACT 173
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG + DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNRCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Query: 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTA 64
SR K + +GD VGKTC+ + + +FP T+ +F V +G + + LWDTA
Sbjct: 27 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTA 86
Query: 65 GQEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTK 121
GQE + + + YR V + + AS+ + L WI E + + + +P +LVG K
Sbjct: 87 GQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHS-LPAWIEECKQHLLANDIPRILVGNK 145
Query: 122 LDLR 125
DLR
Sbjct: 146 CDLR 149
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 13/161 (8%)
Query: 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
R K V +G G VGK+ + + + F Y PT+ D++ V + L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDL 124
E + +R L + F L +S+ +++++ ++ L++ I ++ + VP++LVG K DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDL 120
Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165
+++ V QG+ L +Q ++E S+K++
Sbjct: 121 EDER----------VVGKEQGQNLARQWNNCAFLESSAKSK 151
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 3/131 (2%)
Query: 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLG 59
M+ + K + +G+ GK+C+L + KF D T+ F + ++ G V L
Sbjct: 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62
Query: 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLV 118
+WDTAGQE + + YRGA +L + + SR +Y N L W+ + + S + ++L
Sbjct: 63 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILC 121
Query: 119 GTKLDLREDKH 129
G K DL D+
Sbjct: 122 GNKKDLDADRE 132
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y P++ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 7/130 (5%)
Query: 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLG 59
M S +K + +GD VGKT ++ Y + KF Y T+ +F + V+ + V +
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSP----GVP 114
+WDTAGQE + L YRGAD VL F + + +++ L W E L SP P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFP 119
Query: 115 VVLVGTKLDL 124
V++G K+D
Sbjct: 120 FVVLGNKIDF 129
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQE 67
+K + +G+ VGK+ +L+ +T + F + T+ +F ++ +G L +WDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV--LVGTKLD 123
+ L P YRGA +L + + R ++ L W+ EL+ Y +V LVG K+D
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVK-LDNWLNELETYCTRNDIVNXLVGNKID 132
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 81 DVFVLAFSLVSRASYE--NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+ N+ ++ I ++ S VP+VLVG K DL P
Sbjct: 94 EGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDL----------PTRT 142
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V T Q EL K G +IE S+KT+Q
Sbjct: 143 -VDTKQAHELAKSYGIP-FIETSAKTRQ 168
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y P++ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 82 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 129
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 130 TVESRQAQDLARSYGIP-YIETSAKTRQ 156
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 13/158 (8%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
K V VGD +VGKTC++ + + F T+ +F+ + +G V L +WDTAGQ
Sbjct: 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLR 125
E + + YR A+ +LA+ + R+S+ +V WI +++ Y+ + +L+G K DL
Sbjct: 89 ERFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLS 147
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
E L V+ A+ + L + IE S+K
Sbjct: 148 E----------LREVSLAEAQSLAEHYDILCAIETSAK 175
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F ++ PT+ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAG+E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTA QE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTA QE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DT GQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ +++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DT GQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAG E+Y+ +R R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL P
Sbjct: 94 EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL----------PSRT 142
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V T Q ++L + G +IE S+KT+Q
Sbjct: 143 -VDTKQAQDLARSYGIP-FIETSAKTRQ 168
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 83/161 (51%), Gaps = 13/161 (8%)
Query: 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
R K V +G G VGK+ + + + F +Y PT+ D++ V + L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDL 124
E + +R L + F L +S+ +++++ ++ L++ I ++ + VP++LVG K DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDL 120
Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165
+++ V QG+ L +Q ++E S+K++
Sbjct: 121 EDER----------VVGKEQGQNLARQWCNCAFLESSAKSK 151
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV--AEGTTVNLGLWDTAG 65
K V +GD VGK+ +L +T ++F + T+ F+ + + +WDTAG
Sbjct: 7 LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL 124
QE Y + YRGA +L + + + S+EN+ +KW+ EL+ + + ++LVG K DL
Sbjct: 67 QERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLVGNKSDL 125
Query: 125 R 125
+
Sbjct: 126 K 126
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQ 66
K + +G+ GK+C+L + KF D T+ F + ++ G V L +WDTAGQ
Sbjct: 11 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
E + + YRGA +L + + SR +Y N L W+ + + S + ++L G K DL
Sbjct: 71 ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 129
Query: 126 EDKH 129
D+
Sbjct: 130 ADRE 133
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 14/156 (8%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQED 68
K V +G+ +VGKT ++ + + F Y T+ D S + E TV L LWDTAGQE
Sbjct: 3 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLRED 127
+ L P R + V V+ + + + S++ KWI +++ V ++LVG K DL +
Sbjct: 63 FRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
+ V+ +GE K++ +IE S+K
Sbjct: 122 RQ----------VSIEEGERKAKELNV-MFIETSAK 146
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQE 67
K V VGDG GKT + + + +F Y+PT+ V + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ LR Y A ++ F + SR +Y+NV W +L +P+VL G K+D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 128 K 128
K
Sbjct: 130 K 130
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 13/161 (8%)
Query: 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
R K V +G G VGK+ + + + F Y PT+ D++ V + L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDL 124
E + +R L + F L +S+ +++++ ++ L++ I ++ + VP++LVG K DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDL 120
Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165
+++ V QG+ L +Q ++E S+K++
Sbjct: 121 EDER----------VVGKEQGQNLARQWCNCAFLESSAKSK 151
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 7/130 (5%)
Query: 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLG 59
M S +K + +GD VGKT ++ Y + KF Y T+ +F + V+ + V +
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSP----GVP 114
+WDTAG E + L YRGAD VL F + + +++ L W E L SP P
Sbjct: 61 IWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFP 119
Query: 115 VVLVGTKLDL 124
V++G K+DL
Sbjct: 120 FVVLGNKIDL 129
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQE 67
K V VGDG GKT + + + +F Y+PT+ V + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ LR Y A ++ F + SR +Y+NV W +L +P+VL G K+D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 128 K 128
K
Sbjct: 130 K 130
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAGQE+ + +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAG E+Y+ +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 81 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQ 155
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F +Y PT+ D++ VV +G T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 8/162 (4%)
Query: 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWD 62
S+ + K V GD AVGK+ L+ N+F + T+ +F ++ +G L LWD
Sbjct: 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWD 83
Query: 63 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTK 121
TAGQE + + +R AD +L + + S+ N+ ++W+ ++ + VP++LVG K
Sbjct: 84 TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNK 142
Query: 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
D+R+ A G V GE+L GA + E S+K
Sbjct: 143 ADIRD----TAATEGQKCVPGHFGEKLAMTYGA-LFCETSAK 179
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I N F + PT+ D++ VV +G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
+ F+ F++ + S+E++ ++ I ++ S VP+VLVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQ 166
V + Q ++L + G YIE S+KT+Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQ 150
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 14/159 (8%)
Query: 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAG 65
R K V +G+ +VGKT ++ + + F Y T+ D S + E T+ L LWDTAG
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64
Query: 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL 124
QE + L P R + V+ + + + S++ KWI +++ V ++LVG K DL
Sbjct: 65 QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
+ + V+ +GE K++ +IE S+K
Sbjct: 124 ADKRQ----------VSIEEGERKAKELNV-MFIETSAK 151
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVN-LGLWDTAG 65
R +K +GD VGK+ ++ + + F + PT+ +F V ++ +WDTAG
Sbjct: 4 RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDL 124
QE + L P+ YRG+ ++ + + ++ + LK W+ EL QH P + V + G K DL
Sbjct: 64 QERFRALAPMYYRGSAAAIIVYDITKEETF-STLKNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 125 REDKHYL 131
+ + +
Sbjct: 123 TDVREVM 129
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 13/161 (8%)
Query: 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
R K V +G VGK+ + + + F Y PT+ D++ V + L + DTAG
Sbjct: 4 REYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 63
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDL 124
E + +R L + F L +S+ +++++ ++ L++ I ++ + VP++LVG K DL
Sbjct: 64 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDL 122
Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165
+++ V QG+ L +Q ++E S+K++
Sbjct: 123 EDER----------VVGKEQGQNLARQWNNCAFLESSAKSK 153
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVN-LGLWD 62
SA R +K +GD VGK+ ++ + + F + PT+ +F V ++ +WD
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 63 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTK 121
TAG E + L P+ YRG+ ++ + + ++ + LK W+ EL QH P + V + G K
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETF-STLKNWVRELRQHGPPSIVVAIAGNK 120
Query: 122 LDLREDKHYL 131
DL + + +
Sbjct: 121 CDLTDVREVM 130
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQED 68
K V +G+ AVGKT ++ + + F +Y T+ D S + + V L LWDTAGQE
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSPGVPVVLVGTKLDL 124
+ L P R + ++ + + +R S+EN KWI + L V + LVG K DL
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNERGKDVIIALVGNKTDL 118
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQE 67
K V VGDG GKT + + + +F Y+ T+ V + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
Y LR Y A ++ F + SR +Y+NV W +L +P+VL G K+D+++
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 128 K 128
K
Sbjct: 130 K 130
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 14/159 (8%)
Query: 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAG 65
R K V +G+ +VGKT ++ + + F Y T+ D S + E TV L LWDTAG
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 64
Query: 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL 124
E + L P R + V V+ + + + S++ KWI +++ V ++LVG K DL
Sbjct: 65 LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
+ + V+ +GE K++ +IE S+K
Sbjct: 124 ADKRQ----------VSIEEGERKAKELNV-MFIETSAK 151
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQ 66
K + +G+ GK+C+L + KF D T+ F + ++ G V L +WDTAG
Sbjct: 8 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
E + + YRGA +L + + SR +Y N L W+ + + S + ++L G K DL
Sbjct: 68 ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 126
Query: 126 EDKH 129
D+
Sbjct: 127 ADRE 130
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 14/159 (8%)
Query: 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAG 65
R K V +G+ +VGKT ++ + + F Y T+ D S + E TV L LWDTAG
Sbjct: 15 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74
Query: 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL 124
E + L P R + V V+ + + + S++ KWI +++ V ++LVG K DL
Sbjct: 75 LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL 133
Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
+ + V+ +GE K++ +IE S+K
Sbjct: 134 ADKRQ----------VSIEEGERKAKELNV-MFIETSAK 161
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQE 67
K V VGDG GKT + + + +F Y+ T+ V + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ LR Y A ++ F + SR +Y+NV W +L +P+VL G K+D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 128 K 128
K
Sbjct: 130 K 130
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQE 67
K V VGDG GKT + + + +F Y+ T+ V + +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ LR Y A ++ F + SR +Y+NV W +L +P+VL G K+D+++
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 128 K 128
K
Sbjct: 135 K 135
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQE 67
K V VGDG GKT + + + +F Y+ T+ V + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ LR Y A ++ F + SR +Y+NV W +L +P+VL G K+D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 128 K 128
K
Sbjct: 130 K 130
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQE 67
K V VGDG GKT + + + +F Y+ T+ V + +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ LR Y A ++ F + SR +Y+NV W +L +P+VL G K+D+++
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 122
Query: 128 K 128
K
Sbjct: 123 K 123
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQE 67
K V VGDG GKT + + + +F Y+ T+ V + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ LR Y A ++ F + SR +Y+NV W +L +P+VL G K+D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 128 K 128
K
Sbjct: 130 K 130
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQE 67
K V VGDG GKT + + + +F Y+ T+ V + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ LR Y A ++ F + SR +Y+NV W +L +P+VL G K+D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 128 K 128
K
Sbjct: 130 K 130
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQE 67
K V VGDG GKT + + + +F YI T+ + + + +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ LR Y A ++ F + SR +Y+NV W +L +P+VL G K+D++E
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 124
Query: 128 K 128
K
Sbjct: 125 K 125
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQE 67
K V VGDG GKT + + + +F YI T+ + + + +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ LR Y A ++ F + SR +Y+NV W +L +P+VL G K+D++E
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 123
Query: 128 K 128
K
Sbjct: 124 K 124
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQE 67
K V VGDG GKT + + + +F YI T+ + + + +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ LR Y A ++ F + SR +Y+NV W +L +P+VL G K+D++E
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 131
Query: 128 K 128
K
Sbjct: 132 K 132
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 16/164 (9%)
Query: 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
R+ K V +G VGKT + + +F Y PTV + +S V +L L DTAGQ
Sbjct: 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQ 82
Query: 67 EDYNRLRPLSY-RGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVPVVLVGTKLD 123
++Y+ L P S+ G +VL +S+ S S++ V++ +L H VPVVLVG K D
Sbjct: 83 DEYSIL-PYSFIIGVHGYVLVYSVTSLHSFQ-VIESLYQKLHEGHGKTRVPVVLVGNKAD 140
Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQV 167
L ++ V +G++L + GA+ ++E S++ Q+
Sbjct: 141 LSPER----------EVQAVEGKKLAESWGAT-FMESSARENQL 173
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQ 66
K V +GD VGK+ +L +T+++F + T+ F+ + E + +WDTAG
Sbjct: 10 LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLR 125
E Y + YRGA ++ + + +SYEN W+ EL ++ V V L+G K DL
Sbjct: 70 ERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLTELRENADDNVAVGLIGNKSDLA 128
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQI 152
H VP A+ + Q+
Sbjct: 129 --------HLRAVPTDEAKNFAMENQM 147
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 14/159 (8%)
Query: 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAG 65
R K V +G+ +VGKT ++ + + F Y T+ D S + E T+ L LWDTAG
Sbjct: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 71
Query: 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL 124
E + L P R + V+ + + + S++ KWI +++ V ++LVG K DL
Sbjct: 72 LERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL 130
Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163
+ + V+ +GE K++ +IE S+K
Sbjct: 131 ADKRQ----------VSIEEGERKAKELNV-MFIETSAK 158
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQE 67
K V VGDG GKT + + + +F Y+ T+ V + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ L Y A ++ F + SR +Y+NV W +L +P+VL G K+D+++
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 128 K 128
K
Sbjct: 130 K 130
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQE 67
K V VGDG GKT + + + +F Y+ T+ V + +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ LR Y A ++ F + SR +Y+NV W +L +P+VL G K+D+++
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 131
Query: 128 K 128
K
Sbjct: 132 K 132
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQE 67
K V VGDG GKT + + + +F Y+ T+ V + +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ LR Y A ++ F + SR +Y+NV W +L +P+VL G K+D+++
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 125
Query: 128 K 128
K
Sbjct: 126 K 126
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQE 67
K V VGDG GKT + + + +F Y+ T+ V + +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ LR Y A ++ F + SR +Y+NV W +L +P+VL G K+D+++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 128 K 128
K
Sbjct: 130 K 130
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 15 GDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP 74
G G VGK+ +++ + F YIPTV D + + + + L + DT G + ++
Sbjct: 10 GAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQR 69
Query: 75 LSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLD 123
LS F+L +S+ SR S E + + + I E++ +P++LVG K D
Sbjct: 70 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD 120
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 18/147 (12%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I + + F +DY PT+ D+++ +G L + DTAGQE++ +R R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 81 DVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVP 139
F+L F++ R S+ V K + L+ PVVLVG K DL + VP
Sbjct: 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ--------VP 133
Query: 140 VTTAQGEELRKQIGASY---YIECSSK 163
+ A GAS+ Y E S+K
Sbjct: 134 RSEASA------FGASHHVAYFEASAK 154
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQE 67
K V VGDG GKT + + + + Y+ T+ V + +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
+ LR Y A ++ F + SR +Y+NV W +L +P+VL G K+D+++
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 128 K 128
K
Sbjct: 135 K 135
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 14/145 (9%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I + F DY PT+ D++ + + L + DTAGQE+++ +R R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
D F++ +S+ +AS+E+V + I ++ P++LV K+DL L
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMH----------LR 139
Query: 139 PVTTAQGEELRKQIGASYYIECSSK 163
VT QG+E+ + YIE S+K
Sbjct: 140 KVTRDQGKEMATKYNIP-YIETSAK 163
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + + + + F Y PT+ D + + + + L + DTAG E + +R L +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDL 124
F+L +SLV++ S++++ ++ I ++ Y VPV+LVG K+DL
Sbjct: 76 QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK-VPVILVGNKVDL 120
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV--FDNFSANVVAEGTTVNLGLWDTAGQE 67
K +GDG VGKT + +F +Y TV ++ + +G + +WDTAGQE
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH-YSPGVPVVLVGTKLDLR 125
L+ + Y GA +L F + SR + +N L +W+ E Q P+V+ K+D++
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQN-LARWVKEFQAVVGNEAPIVVCANKIDIK 130
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 14/145 (9%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I + F DY PT+ D++ + + L + DTAGQE+++ +R R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
D F++ +S+ +AS+E+V + I ++ P++LV K+DL L
Sbjct: 86 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMH----------LR 134
Query: 139 PVTTAQGEELRKQIGASYYIECSSK 163
VT QG+E+ + YIE S+K
Sbjct: 135 KVTRDQGKEMATKYNIP-YIETSAK 158
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 14/145 (9%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I + F +Y PT+ D++ + + L + DTAGQE+++ +R R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
D F++ +S+ +AS+E+V + I ++ P++LV K+DL L
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMH----------LR 139
Query: 139 PVTTAQGEELRKQIGASYYIECSSK 163
VT QG+E+ + YIE S+K
Sbjct: 140 KVTRDQGKEMATKYNIP-YIETSAK 163
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 88/176 (50%), Gaps = 28/176 (15%)
Query: 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
M S SR K +G +VGK+ + I + +F Y PT+ + F+ + G +L L
Sbjct: 1 MPQSKSR--KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQL 58
Query: 61 WDTAGQEDYNRLRPLSYRGADV--FVLAFSLVSRASYENV------LKKWIPELQHYSPG 112
DTAGQ++Y+ + P +Y D+ ++L +S+ S S+E + L + ++Q
Sbjct: 59 VDTAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----- 111
Query: 113 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQVC 168
+P++LVG K DL ++ ++ +G+ L + A+ ++E S+K Q
Sbjct: 112 IPIMLVGNKKDLHMER----------VISYEEGKALAESWNAA-FLESSAKENQTA 156
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGT-TVNLGLW 61
S R +K V +GDGA GKT + C+ F Y T+ D F + G V L +W
Sbjct: 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 62 DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW---IPELQHYSPGVPVV-L 117
D GQ ++ GA +L + + + S+EN L+ W + ++ S P+V L
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFEN-LEDWYTVVKKVSEESETQPLVAL 120
Query: 118 VGTKLDLRE 126
VG K+DL
Sbjct: 121 VGNKIDLEH 129
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 88/176 (50%), Gaps = 28/176 (15%)
Query: 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
M S SR K +G +VGK+ + I + +F Y PT+ + F+ + G +L L
Sbjct: 1 MPQSKSR--KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQL 58
Query: 61 WDTAGQEDYNRLRPLSYRGADV--FVLAFSLVSRASYENV------LKKWIPELQHYSPG 112
DTAGQ++Y+ + P +Y D+ ++L +S+ S S+E + L + ++Q
Sbjct: 59 VDTAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----- 111
Query: 113 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQVC 168
+P++LVG K DL ++ ++ +G+ L + A+ ++E S+K Q
Sbjct: 112 IPIMLVGNKKDLHMER----------VISYEEGKALAESWNAA-FLESSAKENQTA 156
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 14/145 (9%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ + I + F +Y PT+ D++ + + L + DTAGQE+++ +R R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
D F++ +S+ +AS+E+V + I ++ P++LV K+DL L
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMH----------LR 139
Query: 139 PVTTAQGEELRKQIGASYYIECSSK 163
VT QG+E+ + YIE S+K
Sbjct: 140 KVTRDQGKEMATKYNIP-YIETSAK 163
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 26/167 (15%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K +G +VGK+ + I + +F Y PT+ + F+ + G +L L DTAGQ++Y
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 70 NRLRPLSYRGADV--FVLAFSLVSRASYENV------LKKWIPELQHYSPGVPVVLVGTK 121
+ + P +Y D+ ++L +S+ S S+E + L + ++Q +P++LVG K
Sbjct: 63 S-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-----IPIMLVGNK 115
Query: 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQVC 168
DL ++ ++ +G+ L + A+ ++E S+K Q
Sbjct: 116 KDLHMER----------VISYEEGKALAESWNAA-FLESSAKENQTA 151
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
K+ +++ + F YIPT+ D + + + + L + DT G + ++ LS
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 81 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLD 123
F+L FS+ S+ S E + + K I +++ +PV+LVG K D
Sbjct: 81 HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD 125
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 86/173 (49%), Gaps = 28/173 (16%)
Query: 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
S SR K +G +VGK+ + I + +F PT+ + F+ + G +L L DT
Sbjct: 2 SKSR--KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDT 59
Query: 64 AGQEDYNRLRPLSYRGADV--FVLAFSLVSRASYENV------LKKWIPELQHYSPGVPV 115
AGQ++Y+ + P +Y D+ ++L +S+ S S+E + L + ++Q +P+
Sbjct: 60 AGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-----IPI 112
Query: 116 VLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQVC 168
+LVG K DL ++ ++ +G+ L + A+ ++E S+K Q
Sbjct: 113 MLVGNKKDLHMER----------VISYEEGKALAESWNAA-FLESSAKENQTA 154
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 115
+ +WDTAGQE Y + PL YRGA ++ F +S ++ + K W+ +L+ S +
Sbjct: 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFD-ISNSNTLDRAKTWVNQLK-ISSNYII 150
Query: 116 VLVGTKL-------DLREDKHYLADHPGLVPVTTAQ 144
+LV K+ D+ E + Y D+ L T+A+
Sbjct: 151 ILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAK 186
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 14 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR 73
VG GKT + S +F D IPTV F+ V +G V + +WD GQ + +
Sbjct: 28 VGLQYSGKTTFVNVIASGQFSEDMIPTV--GFNMRKVTKG-NVTIKIWDIGGQPRFRSMW 84
Query: 74 PLSYRGADVFVLAFSLVSRASYE-------NVLKKWIPELQHYSPGVPVVLVGTKLDL 124
RG + V R E N+L K P+LQ G+PV+++G K DL
Sbjct: 85 ERYCRGVNAIVYMIDAADREKIEASRNELHNLLDK--PQLQ----GIPVLVLGNKRDL 136
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 20 GKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79
GKT + S +F D IPTV F+ + +G V + LWD GQ + + RG
Sbjct: 34 GKTTFVNVIASGQFNEDMIPTV--GFNMRKITKG-NVTIKLWDIGGQPRFRSMWERYCRG 90
Query: 80 ADVFVLAFSLVSRASYE-------NVLKKWIPELQHYSPGVPVVLVGTKLDL 124
V + E N+L K P+LQ G+PV+++G K DL
Sbjct: 91 VSAIVYMVDAADQEKIEASKNELHNLLDK--PQLQ----GIPVLVLGNKRDL 136
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
++ VG GKT + S +F D IPTV F+ + +G V + LWD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTV--GFNMRKITKG-NVTIKLWDIGGQPR 88
Query: 69 YNRLRPLSYRGADVFVLAFSLVSRASYE-------NVLKKWIPELQHYSPGVPVVLVGTK 121
+ + RG V + E N+L K P+LQ G+PV+++G K
Sbjct: 89 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK--PQLQ----GIPVLVLGNK 142
Query: 122 LDL 124
DL
Sbjct: 143 RDL 145
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 10 KCVTVGDGAVGKTCMLICYTS--NKFPTDYIPTV-FDNFSANVVAEGTTVN--LGLWDTA 64
K VG+ VGK+ ++ +TS +KF DY T + A V TTV+ L L DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG----VPVVLVGT 120
G + Y + G +L F + S S+E+ K W L+ P + VLV
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVAN 140
Query: 121 KLDLREDKH 129
K DL +H
Sbjct: 141 KTDLPPQRH 149
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 8/123 (6%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--DNFSANVVAEG---TTVNLGLWD 62
+ + V +G+ VGK+ + + D V D + ++ +G T + L +W+
Sbjct: 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 63 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPVVLVGTK 121
G+ ++ L + D +++ +S+ RAS+E + I + +P++LVG K
Sbjct: 66 NKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 122 LDL 124
DL
Sbjct: 124 SDL 126
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
Query: 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--DNFSANVVAEG---TTV 56
+ S + + + V +G+ VGK+ + + D V D + ++ +G T +
Sbjct: 31 SESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATII 90
Query: 57 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPV 115
L +W+ G+ ++ L + D +++ +S+ RAS+E + I + +P+
Sbjct: 91 LLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 148
Query: 116 VLVGTKLDL 124
+LVG K DL
Sbjct: 149 ILVGNKSDL 157
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 8/123 (6%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--DNFSANVVAEG---TTVNLGLWD 62
+ + V +G+ VGK+ + + D V D + ++ +G T + L +W+
Sbjct: 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 63 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPVVLVGTK 121
G+ ++ L + D +++ +S+ RAS+E + I + +P++LVG K
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 122 LDL 124
DL
Sbjct: 124 SDL 126
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--DNFSANVVAEG---TTVNL 58
S + + + V +G+ VGK+ + + D V D + ++ +G T + L
Sbjct: 2 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 61
Query: 59 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPVVL 117
+W+ G+ ++ L + D +++ +S+ RAS+E + I + +P++L
Sbjct: 62 DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 118 VGTKLDL 124
VG K DL
Sbjct: 120 VGNKSDL 126
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT--AGQE 67
+ V +GD VGKT + + + + D + + +G L + DT A +
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPVVLVGTKLDL 124
D + + +G +V+ +S+ R S+E+ + I H + VP++LVG K DL
Sbjct: 66 DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 58 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVL 117
L +WD AG+E++ P +++ + L + + K W+ ++ + PV+L
Sbjct: 56 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 115
Query: 118 VGTKLDLREDKHYLA 132
VGT LD+ ++K A
Sbjct: 116 VGTHLDVSDEKQRKA 130
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 58 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVL 117
L +WD AG+E++ P +++ + L + + K W+ ++ + PV+L
Sbjct: 58 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 117
Query: 118 VGTKLDLREDKHYLA 132
VGT LD+ ++K A
Sbjct: 118 VGTHLDVSDEKQRKA 132
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 22/156 (14%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
+ +G GK+ + + + + +F ++Y P + D +S+ + V+L + DTA +
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81
Query: 69 -YNRLRPLSYRGADVFVLAFSL------VSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121
N R L++ A F++ +S+ S +SY +L E Q +P +L+G K
Sbjct: 82 PRNCERYLNW--AHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQR---SIPALLLGNK 136
Query: 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 157
LD+ + + VT A+G L + G ++
Sbjct: 137 LDMAQYRQ----------VTKAEGVALAGRFGCLFF 162
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQ 66
K + VG+ VGK+ + + + + + P D + ++ + V L ++D Q
Sbjct: 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82
Query: 67 EDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLD 123
D LR + D F++ FS+ R S+ V + + L+ P +PV+LVG K D
Sbjct: 83 GDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSD 141
Query: 124 L 124
L
Sbjct: 142 L 142
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDY---IPTVFDNFSANVVAEGTTVNLGLWDTAG 65
K + VG+ VGK+ + T D+ + D + ++ + V L ++D
Sbjct: 3 FKVMLVGESGVGKSTL--AGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 60
Query: 66 QEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKL 122
Q D L+ + D F++ FS+ R S+ V + + L+ P +PV+LVG K
Sbjct: 61 QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKS 119
Query: 123 DL 124
DL
Sbjct: 120 DL 121
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDY-IPTVFDNFSANVVAEGTTVNLGLWDTAGQE 67
K + +G+ VGK+ + + + + + D + ++ + V L ++D Q
Sbjct: 13 FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 72
Query: 68 DYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDL 124
D L+ + D F++ FS+ R S+ V + + L+ P +PV+LVG K DL
Sbjct: 73 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDL 131
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Query: 10 KCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ- 66
K + +G GK+ M SN F T + D +++ G + L LWD GQ
Sbjct: 8 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN-MTLNLWDCGGQD 66
Query: 67 ---EDY-NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGT 120
E+Y + + ++ V + F + S +++ K + +L+ YSP + ++
Sbjct: 67 VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLH 126
Query: 121 KLDL 124
K+DL
Sbjct: 127 KMDL 130
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 46/128 (35%), Gaps = 21/128 (16%)
Query: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL-------- 60
IK +GDG GKT +L F P NVV + GL
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFD----PKESQTHGLNVVTKQAPNIKGLENDDELKE 97
Query: 61 -----WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 115
WD GQE + + V++L L SR W+ ++ Y PV
Sbjct: 98 CLFHFWDFGGQEIMHASHQFFMTRSSVYMLL--LDSRTDSNK--HYWLRHIEKYGGKSPV 153
Query: 116 VLVGTKLD 123
++V K+D
Sbjct: 154 IVVMNKID 161
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 44 NFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWI 103
+ ++V +G +L ++D Q+ L D +V+ +S+ + S+E + +
Sbjct: 42 TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 101
Query: 104 P-ELQHYSPGVPVVLVGTKLDL 124
+ VP++LVG K DL
Sbjct: 102 QLRRARQTDDVPIILVGNKSDL 123
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 44 NFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWI 103
+ ++V +G +L ++D Q+ L D +V+ +S+ + S+E + +
Sbjct: 37 TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 96
Query: 104 P-ELQHYSPGVPVVLVGTKLDLREDKHYLADH 134
+ VP++LVG K DL + D
Sbjct: 97 QLRRARQTDDVPIILVGNKSDLVRSREVSVDE 128
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 44 NFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWI 103
+ ++V +G +L ++D Q+ L D +V+ +S+ + S+E + +
Sbjct: 42 TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 101
Query: 104 P-ELQHYSPGVPVVLVGTKLDLREDKHYLADH 134
+ VP++LVG K DL + D
Sbjct: 102 QLRRARQTDDVPIILVGNKSDLVRSREVSVDE 133
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 75 LSYRGADVFVLAFSLVSRASYENVLK------KWIPELQ-HYSPGVPVVLVGTKLDLRED 127
L + AD+F ++RA+ + VL + +L +PG PV+ GT LD
Sbjct: 88 LLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGSGTVLDSARF 147
Query: 128 KHYLADHPGL 137
+H +A H G+
Sbjct: 148 RHLMAQHAGV 157
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 48/138 (34%), Gaps = 16/138 (11%)
Query: 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
K + VG GKT +L + N+ PT+ N VV + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEV-VHTSPTIGSNVEEIVVK---NTHFLMWDIGGQESL 73
Query: 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLV-GTKLDLR--- 125
Y + +L + R ++ L H VL+ K D++
Sbjct: 74 RSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCM 133
Query: 126 ---EDKHYLA-----DHP 135
E YL DHP
Sbjct: 134 TAAEISKYLTLSSIKDHP 151
>pdb|4DN1|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
pdb|4DN1|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
Length = 408
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83
+++ LWD AGQE +R L G D F
Sbjct: 144 AALDIALWDIAGQEAGKSIRDLLGGGVDSF 173
>pdb|2NQL|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
pdb|2NQL|B Chain B, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
Length = 388
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83
+++ LWD AGQE +R L G D F
Sbjct: 124 AALDIALWDIAGQEAGKSIRDLLGGGVDSF 153
>pdb|2WPG|A Chain A, Sucrose Hydrolase
Length = 637
Score = 26.9 bits (58), Expect = 5.3, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 111 PGVPVVLVGTKLDLREDKHYLAD 133
PGVP++ +G +L L D YL D
Sbjct: 486 PGVPLIYMGDELALPNDTAYLDD 508
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,160,867
Number of Sequences: 62578
Number of extensions: 214148
Number of successful extensions: 1074
Number of sequences better than 100.0: 307
Number of HSP's better than 100.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 509
Number of HSP's gapped (non-prelim): 307
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)