Query 030961
Match_columns 168
No_of_seqs 107 out of 1392
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 07:09:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 3.3E-42 7.2E-47 230.0 15.2 157 1-168 2-160 (205)
2 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 7.2E-40 1.6E-44 218.4 15.0 152 5-168 19-173 (221)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 1.3E-39 2.8E-44 216.9 15.7 151 6-168 3-155 (200)
4 KOG0078 GTP-binding protein SE 100.0 1.6E-39 3.6E-44 219.9 15.4 153 4-168 8-162 (207)
5 cd04133 Rop_like Rop subfamily 100.0 1.8E-38 4E-43 217.0 19.6 160 9-168 2-161 (176)
6 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.3E-38 4.9E-43 217.8 18.3 164 5-168 2-168 (182)
7 KOG0098 GTPase Rab2, small G p 100.0 7.1E-39 1.5E-43 212.1 13.1 153 4-168 2-156 (216)
8 cd04131 Rnd Rnd subfamily. Th 100.0 1E-37 2.2E-42 214.0 18.4 161 8-168 1-164 (178)
9 cd01875 RhoG RhoG subfamily. 100.0 4.8E-37 1E-41 213.0 18.5 161 8-168 3-165 (191)
10 KOG0394 Ras-related GTPase [Ge 100.0 6.6E-38 1.4E-42 207.1 13.3 159 1-168 1-166 (210)
11 cd04121 Rab40 Rab40 subfamily. 100.0 3.3E-37 7.2E-42 213.0 17.5 151 6-168 4-155 (189)
12 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.3E-36 2.8E-41 208.1 18.8 160 9-168 2-163 (175)
13 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 9.7E-37 2.1E-41 215.9 17.9 163 6-168 11-176 (232)
14 cd04120 Rab12 Rab12 subfamily. 100.0 9.9E-37 2.1E-41 212.5 17.3 148 9-168 1-151 (202)
15 KOG0080 GTPase Rab18, small G 100.0 3E-37 6.4E-42 199.9 13.2 152 5-168 8-162 (209)
16 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 3.5E-36 7.5E-41 212.1 17.6 159 9-167 2-162 (222)
17 cd01871 Rac1_like Rac1-like su 100.0 8.6E-36 1.9E-40 203.9 18.5 160 9-168 2-163 (174)
18 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 5.8E-36 1.3E-40 204.4 16.8 149 8-168 2-152 (172)
19 KOG0087 GTPase Rab11/YPT3, sma 100.0 4.1E-36 8.8E-41 202.8 14.6 152 5-168 11-164 (222)
20 KOG0079 GTP-binding protein H- 100.0 5.2E-37 1.1E-41 196.2 9.0 151 6-168 6-157 (198)
21 cd04122 Rab14 Rab14 subfamily. 100.0 4.1E-35 8.8E-40 199.1 17.0 149 8-168 2-152 (166)
22 cd04136 Rap_like Rap-like subf 100.0 6.5E-35 1.4E-39 197.2 17.0 149 8-168 1-151 (163)
23 cd04134 Rho3 Rho3 subfamily. 100.0 1.6E-34 3.4E-39 200.2 18.8 160 9-168 1-162 (189)
24 PTZ00369 Ras-like protein; Pro 100.0 1.4E-34 3E-39 200.4 17.9 151 6-168 3-155 (189)
25 KOG0093 GTPase Rab3, small G p 100.0 1.4E-35 3.1E-40 189.5 11.6 151 6-168 19-171 (193)
26 cd04175 Rap1 Rap1 subgroup. T 100.0 1.3E-34 2.8E-39 196.2 16.7 149 8-168 1-151 (164)
27 smart00174 RHO Rho (Ras homolo 100.0 3.1E-34 6.7E-39 196.0 18.4 158 11-168 1-160 (174)
28 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.8E-34 6.1E-39 200.7 17.7 149 9-168 1-156 (201)
29 cd01867 Rab8_Rab10_Rab13_like 100.0 2.5E-34 5.5E-39 195.4 16.8 150 7-168 2-153 (167)
30 cd01865 Rab3 Rab3 subfamily. 100.0 3.4E-34 7.4E-39 194.4 17.4 148 9-168 2-151 (165)
31 cd04117 Rab15 Rab15 subfamily. 100.0 3.8E-34 8.2E-39 193.5 17.3 148 9-168 1-150 (161)
32 cd04130 Wrch_1 Wrch-1 subfamil 100.0 7.3E-34 1.6E-38 194.2 18.8 160 9-168 1-162 (173)
33 cd04127 Rab27A Rab27a subfamil 100.0 3.2E-34 7E-39 197.0 16.4 151 6-168 2-165 (180)
34 PLN03071 GTP-binding nuclear p 100.0 6E-34 1.3E-38 201.2 18.0 150 5-168 10-160 (219)
35 cd04132 Rho4_like Rho4-like su 100.0 5.4E-34 1.2E-38 197.1 17.2 154 9-168 1-155 (187)
36 cd04176 Rap2 Rap2 subgroup. T 100.0 7.2E-34 1.6E-38 192.3 17.3 149 8-168 1-151 (163)
37 KOG0086 GTPase Rab4, small G p 100.0 3.7E-35 8.1E-40 188.8 10.3 156 1-168 2-159 (214)
38 cd04144 Ras2 Ras2 subfamily. 100.0 3.3E-34 7.1E-39 198.7 15.7 147 10-168 1-151 (190)
39 cd04135 Tc10 TC10 subfamily. 100.0 2.3E-33 5.1E-38 191.7 19.5 160 9-168 1-162 (174)
40 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 9.3E-34 2E-38 192.4 17.0 149 8-168 2-152 (166)
41 cd01864 Rab19 Rab19 subfamily. 100.0 9.5E-34 2.1E-38 192.2 16.9 151 7-168 2-154 (165)
42 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.1E-33 2.4E-38 194.7 17.2 152 9-168 1-154 (182)
43 cd04140 ARHI_like ARHI subfami 100.0 1.1E-33 2.3E-38 192.0 16.8 148 9-168 2-153 (165)
44 cd04110 Rab35 Rab35 subfamily. 100.0 1.4E-33 3E-38 196.9 17.8 151 6-168 4-155 (199)
45 smart00173 RAS Ras subfamily o 100.0 9.8E-34 2.1E-38 191.8 16.5 148 9-168 1-150 (164)
46 cd04106 Rab23_lke Rab23-like s 100.0 1.2E-33 2.5E-38 191.0 16.4 148 9-168 1-151 (162)
47 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.4E-33 3.1E-38 190.8 16.6 150 7-168 1-152 (164)
48 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.8E-33 3.9E-38 189.7 16.9 148 8-168 1-150 (162)
49 KOG0393 Ras-related small GTPa 100.0 2.6E-34 5.6E-39 195.3 12.3 163 6-168 2-167 (198)
50 cd01873 RhoBTB RhoBTB subfamil 100.0 3.9E-33 8.4E-38 193.7 18.5 158 8-168 2-184 (195)
51 cd01868 Rab11_like Rab11-like. 100.0 2.2E-33 4.7E-38 190.3 16.8 150 7-168 2-153 (165)
52 PF00071 Ras: Ras family; Int 100.0 1.2E-33 2.6E-38 191.0 14.9 147 10-168 1-149 (162)
53 cd04116 Rab9 Rab9 subfamily. 100.0 4.4E-33 9.5E-38 189.7 17.8 152 5-168 2-159 (170)
54 cd04119 RJL RJL (RabJ-Like) su 100.0 2.4E-33 5.3E-38 190.1 16.3 148 9-168 1-155 (168)
55 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3.6E-33 7.8E-38 190.3 17.0 149 10-168 2-153 (170)
56 cd04109 Rab28 Rab28 subfamily. 100.0 3.1E-33 6.7E-38 197.3 16.8 148 9-168 1-154 (215)
57 PLN03110 Rab GTPase; Provision 100.0 4.1E-33 8.8E-38 196.7 17.3 152 5-168 9-162 (216)
58 cd00877 Ran Ran (Ras-related n 100.0 8.4E-33 1.8E-37 187.8 17.9 146 9-168 1-147 (166)
59 cd04111 Rab39 Rab39 subfamily. 100.0 5.8E-33 1.3E-37 195.2 17.0 150 7-168 1-154 (211)
60 cd04125 RabA_like RabA-like su 100.0 8.8E-33 1.9E-37 191.2 17.4 148 9-168 1-150 (188)
61 cd04113 Rab4 Rab4 subfamily. 100.0 8.3E-33 1.8E-37 186.7 16.6 148 9-168 1-150 (161)
62 cd01866 Rab2 Rab2 subfamily. 100.0 1.1E-32 2.4E-37 187.5 17.2 150 7-168 3-154 (168)
63 KOG0091 GTPase Rab39, small G 100.0 1E-33 2.2E-38 183.9 11.3 152 5-168 5-161 (213)
64 cd04124 RabL2 RabL2 subfamily. 100.0 1.4E-32 3E-37 185.9 17.4 145 9-168 1-146 (161)
65 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.1E-32 2.3E-37 187.9 16.7 146 7-164 1-150 (170)
66 cd04177 RSR1 RSR1 subgroup. R 100.0 1.8E-32 3.8E-37 186.5 17.5 149 9-168 2-152 (168)
67 cd04112 Rab26 Rab26 subfamily. 100.0 1.2E-32 2.5E-37 191.1 16.8 148 9-168 1-151 (191)
68 cd01870 RhoA_like RhoA-like su 100.0 5.1E-32 1.1E-36 185.2 19.0 160 9-168 2-163 (175)
69 cd04126 Rab20 Rab20 subfamily. 100.0 1.9E-32 4.2E-37 192.9 16.8 155 9-168 1-178 (220)
70 PLN03108 Rab family protein; P 100.0 2.7E-32 6E-37 191.7 17.4 152 5-168 3-156 (210)
71 smart00176 RAN Ran (Ras-relate 100.0 1.7E-32 3.7E-37 190.9 15.9 141 14-168 1-142 (200)
72 KOG0095 GTPase Rab30, small G 100.0 1.1E-33 2.3E-38 181.5 8.9 150 7-168 6-157 (213)
73 cd01892 Miro2 Miro2 subfamily. 100.0 2.8E-32 6.1E-37 185.7 16.4 151 6-168 2-154 (169)
74 cd04103 Centaurin_gamma Centau 100.0 4.2E-32 9.2E-37 182.9 16.8 145 9-168 1-147 (158)
75 cd04143 Rhes_like Rhes_like su 100.0 3.4E-32 7.4E-37 195.0 16.9 149 9-168 1-159 (247)
76 cd04118 Rab24 Rab24 subfamily. 100.0 8.6E-32 1.9E-36 186.9 18.3 152 9-168 1-154 (193)
77 cd04146 RERG_RasL11_like RERG/ 100.0 2.4E-32 5.2E-37 185.3 15.2 147 10-168 1-152 (165)
78 KOG0088 GTPase Rab21, small G 100.0 1.9E-33 4.2E-38 181.9 8.7 152 5-168 10-163 (218)
79 smart00175 RAB Rab subfamily o 100.0 6.8E-32 1.5E-36 182.5 16.6 148 9-168 1-150 (164)
80 cd04129 Rho2 Rho2 subfamily. 100.0 1.6E-31 3.4E-36 184.8 18.7 160 9-168 2-161 (187)
81 cd04101 RabL4 RabL4 (Rab-like4 100.0 6.6E-32 1.4E-36 182.8 16.4 148 9-168 1-152 (164)
82 cd01861 Rab6 Rab6 subfamily. 100.0 9.6E-32 2.1E-36 181.4 16.8 148 9-168 1-150 (161)
83 cd04142 RRP22 RRP22 subfamily. 100.0 1.4E-31 3E-36 186.4 17.7 148 9-168 1-162 (198)
84 cd00157 Rho Rho (Ras homology) 100.0 2.5E-31 5.4E-36 181.0 18.4 160 9-168 1-161 (171)
85 cd01860 Rab5_related Rab5-rela 100.0 1.5E-31 3.2E-36 180.8 16.8 149 8-168 1-151 (163)
86 KOG0395 Ras-related GTPase [Ge 100.0 3.7E-32 8.1E-37 188.0 14.0 150 7-168 2-153 (196)
87 KOG0081 GTPase Rab27, small G 100.0 2.5E-34 5.4E-39 186.1 2.8 151 6-168 7-169 (219)
88 cd01863 Rab18 Rab18 subfamily. 100.0 4.9E-31 1.1E-35 178.0 17.7 147 9-168 1-150 (161)
89 cd01862 Rab7 Rab7 subfamily. 100.0 2.9E-31 6.2E-36 180.8 16.7 149 9-168 1-155 (172)
90 PLN03118 Rab family protein; P 100.0 5.1E-31 1.1E-35 185.5 17.7 151 6-168 12-165 (211)
91 cd04148 RGK RGK subfamily. Th 100.0 7.4E-31 1.6E-35 185.7 17.1 146 9-168 1-151 (221)
92 cd04123 Rab21 Rab21 subfamily. 100.0 1E-30 2.2E-35 176.3 16.9 148 9-168 1-150 (162)
93 KOG0097 GTPase Rab14, small G 100.0 9.6E-32 2.1E-36 171.3 10.8 151 6-168 9-161 (215)
94 cd04139 RalA_RalB RalA/RalB su 100.0 1.4E-30 3E-35 176.0 16.7 148 9-168 1-150 (164)
95 KOG0083 GTPase Rab26/Rab37, sm 100.0 2.3E-33 4.9E-38 176.9 2.3 145 12-168 1-148 (192)
96 cd04114 Rab30 Rab30 subfamily. 100.0 7.1E-30 1.5E-34 173.6 17.9 151 6-168 5-157 (169)
97 cd04149 Arf6 Arf6 subfamily. 100.0 8.3E-31 1.8E-35 178.3 12.8 146 6-168 7-158 (168)
98 cd00154 Rab Rab family. Rab G 100.0 7.2E-30 1.6E-34 171.1 16.2 148 9-168 1-150 (159)
99 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 5.3E-31 1.1E-35 178.6 10.6 139 11-164 2-144 (164)
100 cd01893 Miro1 Miro1 subfamily. 100.0 8E-30 1.7E-34 173.1 16.1 151 9-168 1-152 (166)
101 cd04137 RheB Rheb (Ras Homolog 100.0 8.7E-30 1.9E-34 175.0 15.8 148 9-168 2-151 (180)
102 cd00876 Ras Ras family. The R 100.0 9.7E-30 2.1E-34 171.2 15.1 147 10-168 1-149 (160)
103 cd04102 RabL3 RabL3 (Rab-like3 100.0 2.8E-29 6E-34 174.8 16.0 150 9-166 1-176 (202)
104 cd04150 Arf1_5_like Arf1-Arf5- 100.0 9.9E-30 2.1E-34 171.6 13.1 143 9-168 1-149 (159)
105 PTZ00132 GTP-binding nuclear p 100.0 6.7E-29 1.5E-33 175.2 17.8 152 3-168 4-156 (215)
106 PLN00223 ADP-ribosylation fact 100.0 1E-29 2.2E-34 174.9 13.2 144 6-168 15-166 (181)
107 cd04147 Ras_dva Ras-dva subfam 100.0 6.3E-29 1.4E-33 173.3 16.4 147 10-168 1-151 (198)
108 smart00177 ARF ARF-like small 100.0 2.2E-29 4.7E-34 172.4 13.5 145 6-168 11-162 (175)
109 cd04158 ARD1 ARD1 subfamily. 100.0 2.7E-29 5.8E-34 171.0 13.4 142 10-168 1-149 (169)
110 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 8.8E-29 1.9E-33 170.6 14.3 148 7-168 2-158 (183)
111 cd04154 Arl2 Arl2 subfamily. 100.0 9.9E-29 2.2E-33 168.8 14.0 146 5-168 11-163 (173)
112 PTZ00133 ADP-ribosylation fact 100.0 7.7E-29 1.7E-33 170.7 13.2 146 6-168 15-166 (182)
113 PLN00023 GTP-binding protein; 100.0 6.4E-28 1.4E-32 176.0 16.4 147 5-156 18-191 (334)
114 cd04157 Arl6 Arl6 subfamily. 100.0 7.4E-28 1.6E-32 162.5 12.2 142 10-168 1-152 (162)
115 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.4E-27 3.1E-32 163.3 13.5 145 7-168 14-164 (174)
116 cd04156 ARLTS1 ARLTS1 subfamil 100.0 3.7E-27 8.1E-32 158.9 13.4 142 10-168 1-150 (160)
117 cd04161 Arl2l1_Arl13_like Arl2 100.0 6.8E-28 1.5E-32 163.8 9.8 145 10-165 1-148 (167)
118 cd04151 Arl1 Arl1 subfamily. 100.0 3.2E-27 7E-32 159.0 12.9 142 10-168 1-148 (158)
119 cd00879 Sar1 Sar1 subfamily. 99.9 1E-26 2.3E-31 161.0 14.1 146 6-168 17-179 (190)
120 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1E-26 2.2E-31 157.7 13.7 143 10-168 1-157 (167)
121 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2.4E-26 5.2E-31 154.7 13.4 141 10-168 1-148 (158)
122 smart00178 SAR Sar1p-like memb 99.9 2.4E-26 5.2E-31 158.6 13.0 146 6-168 15-173 (184)
123 PF00025 Arf: ADP-ribosylation 99.9 1.6E-26 3.5E-31 158.1 10.7 147 5-168 11-164 (175)
124 KOG4252 GTP-binding protein [S 99.9 3.2E-28 6.9E-33 160.8 1.4 151 6-168 18-169 (246)
125 cd04159 Arl10_like Arl10-like 99.9 3.1E-25 6.8E-30 148.6 14.6 141 11-168 2-149 (159)
126 PTZ00099 rab6; Provisional 99.9 2.5E-25 5.5E-30 152.2 14.4 126 31-168 3-130 (176)
127 KOG0073 GTP-binding ADP-ribosy 99.9 3E-25 6.5E-30 144.5 12.9 152 5-167 13-165 (185)
128 cd01890 LepA LepA subfamily. 99.9 6.5E-25 1.4E-29 150.5 12.4 143 10-168 2-165 (179)
129 TIGR00231 small_GTP small GTP- 99.9 2.7E-24 5.9E-29 143.7 14.8 149 8-168 1-152 (161)
130 COG1100 GTPase SAR1 and relate 99.9 1.5E-24 3.2E-29 153.3 14.2 160 8-168 5-173 (219)
131 TIGR02528 EutP ethanolamine ut 99.9 1.6E-25 3.5E-30 148.2 8.5 127 10-168 2-133 (142)
132 cd01897 NOG NOG1 is a nucleola 99.9 4.1E-24 8.8E-29 145.1 14.2 144 9-168 1-156 (168)
133 KOG0075 GTP-binding ADP-ribosy 99.9 1.6E-25 3.4E-30 143.4 6.2 144 7-168 19-170 (186)
134 cd04155 Arl3 Arl3 subfamily. 99.9 2.8E-24 6.1E-29 146.6 12.3 144 6-168 12-163 (173)
135 cd01898 Obg Obg subfamily. Th 99.9 3.4E-24 7.3E-29 145.7 12.4 145 10-168 2-159 (170)
136 KOG0070 GTP-binding ADP-ribosy 99.9 3.7E-24 7.9E-29 142.6 11.1 147 5-168 14-166 (181)
137 PF08477 Miro: Miro-like prote 99.9 5.3E-24 1.2E-28 136.9 11.5 114 10-123 1-119 (119)
138 cd01878 HflX HflX subfamily. 99.9 4.8E-24 1E-28 149.3 11.4 145 6-168 39-193 (204)
139 cd04171 SelB SelB subfamily. 99.9 8.5E-24 1.8E-28 142.8 11.6 143 10-168 2-154 (164)
140 cd01891 TypA_BipA TypA (tyrosi 99.9 8.4E-24 1.8E-28 147.0 11.6 147 8-168 2-170 (194)
141 PRK12299 obgE GTPase CgtA; Rev 99.9 1.3E-23 2.8E-28 156.2 13.2 147 9-168 159-316 (335)
142 KOG1673 Ras GTPases [General f 99.9 1.2E-23 2.6E-28 136.1 9.1 155 7-168 19-174 (205)
143 TIGR00436 era GTP-binding prot 99.9 4.6E-23 9.9E-28 150.0 12.5 142 10-168 2-152 (270)
144 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 6.8E-23 1.5E-27 139.0 11.9 146 10-168 2-154 (168)
145 cd00882 Ras_like_GTPase Ras-li 99.9 2.1E-22 4.7E-27 133.3 14.0 144 13-168 1-148 (157)
146 TIGR03598 GTPase_YsxC ribosome 99.9 1.1E-22 2.4E-27 139.7 12.0 151 3-168 13-178 (179)
147 cd01879 FeoB Ferrous iron tran 99.9 2.3E-22 4.9E-27 135.1 12.8 136 13-168 1-145 (158)
148 PRK15494 era GTPase Era; Provi 99.9 2.4E-22 5.1E-27 150.2 13.2 144 6-168 50-204 (339)
149 TIGR02729 Obg_CgtA Obg family 99.9 3.1E-22 6.8E-27 148.7 12.9 147 8-168 157-317 (329)
150 TIGR03156 GTP_HflX GTP-binding 99.9 2.8E-22 6E-27 150.2 11.8 142 7-168 188-340 (351)
151 PF02421 FeoB_N: Ferrous iron 99.9 3.1E-22 6.8E-27 133.0 9.9 140 9-168 1-149 (156)
152 PRK04213 GTP-binding protein; 99.9 1.5E-22 3.3E-27 141.4 8.5 143 5-168 6-180 (201)
153 PRK03003 GTP-binding protein D 99.9 5.9E-22 1.3E-26 154.1 11.5 141 7-168 37-187 (472)
154 cd01894 EngA1 EngA1 subfamily. 99.9 1.3E-21 2.7E-26 131.2 11.5 136 12-168 1-146 (157)
155 PRK03003 GTP-binding protein D 99.9 9.9E-22 2.1E-26 152.9 12.4 148 7-168 210-370 (472)
156 KOG0071 GTP-binding ADP-ribosy 99.9 2.3E-21 5E-26 123.5 11.2 145 6-167 15-165 (180)
157 KOG3883 Ras family small GTPas 99.9 1E-20 2.2E-25 122.3 14.2 146 7-164 8-159 (198)
158 cd04163 Era Era subfamily. Er 99.9 2.9E-21 6.2E-26 130.3 12.4 147 8-168 3-157 (168)
159 TIGR00487 IF-2 translation ini 99.9 4.3E-21 9.3E-26 151.7 15.1 145 6-168 85-238 (587)
160 COG1159 Era GTPase [General fu 99.9 1.4E-21 3E-26 139.7 11.1 148 7-168 5-160 (298)
161 cd01881 Obg_like The Obg-like 99.9 1.7E-21 3.7E-26 133.0 11.3 143 13-168 1-165 (176)
162 PRK00089 era GTPase Era; Revie 99.9 4.2E-21 9.1E-26 141.3 13.6 148 7-168 4-159 (292)
163 cd04105 SR_beta Signal recogni 99.9 3.3E-21 7.2E-26 134.8 12.4 117 10-127 2-124 (203)
164 TIGR01393 lepA GTP-binding pro 99.9 3.3E-21 7.1E-26 152.9 13.8 145 8-168 3-168 (595)
165 cd04164 trmE TrmE (MnmE, ThdF, 99.9 3.2E-21 6.8E-26 129.1 11.4 134 9-168 2-145 (157)
166 TIGR00450 mnmE_trmE_thdF tRNA 99.9 5E-21 1.1E-25 147.2 13.8 134 7-164 202-345 (442)
167 cd01895 EngA2 EngA2 subfamily. 99.9 9.8E-21 2.1E-25 128.6 13.6 145 8-168 2-163 (174)
168 cd00881 GTP_translation_factor 99.9 3.2E-21 6.9E-26 133.0 11.3 147 10-168 1-175 (189)
169 TIGR03594 GTPase_EngA ribosome 99.9 1.4E-20 3E-25 145.3 15.8 146 6-168 170-332 (429)
170 PRK12297 obgE GTPase CgtA; Rev 99.9 1.2E-20 2.6E-25 143.8 14.3 142 10-168 160-315 (424)
171 PRK05291 trmE tRNA modificatio 99.9 4.6E-21 1E-25 148.0 12.1 135 7-168 214-358 (449)
172 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 2.8E-21 6E-26 129.0 9.1 153 1-167 1-156 (216)
173 PRK00093 GTP-binding protein D 99.9 8.5E-21 1.8E-25 146.7 12.7 139 9-168 2-150 (435)
174 PRK11058 GTPase HflX; Provisio 99.9 9.6E-21 2.1E-25 144.9 12.7 144 8-168 197-350 (426)
175 PRK15467 ethanolamine utilizat 99.9 4.6E-21 1E-25 129.1 9.7 128 10-168 3-135 (158)
176 KOG0074 GTP-binding ADP-ribosy 99.8 2.8E-20 6.1E-25 118.7 11.5 147 4-168 13-167 (185)
177 cd01889 SelB_euk SelB subfamil 99.8 1E-20 2.2E-25 131.3 10.1 148 9-168 1-174 (192)
178 CHL00189 infB translation init 99.8 2.2E-20 4.8E-25 149.9 13.1 150 6-168 242-398 (742)
179 PRK05306 infB translation init 99.8 6.6E-20 1.4E-24 148.3 15.8 148 6-168 288-440 (787)
180 TIGR00475 selB selenocysteine- 99.8 2.9E-20 6.2E-25 147.4 13.5 143 9-168 1-154 (581)
181 PRK00454 engB GTP-binding prot 99.8 2.6E-20 5.7E-25 129.4 11.6 150 4-168 20-182 (196)
182 PRK12317 elongation factor 1-a 99.8 3E-20 6.5E-25 143.1 13.0 159 3-168 1-193 (425)
183 TIGR00483 EF-1_alpha translati 99.8 2.7E-20 5.8E-25 143.4 11.9 156 5-168 4-195 (426)
184 PRK12298 obgE GTPase CgtA; Rev 99.8 5.2E-20 1.1E-24 139.5 12.9 146 10-168 161-321 (390)
185 TIGR03594 GTPase_EngA ribosome 99.8 3.9E-20 8.5E-25 142.8 11.8 138 10-168 1-148 (429)
186 PRK12296 obgE GTPase CgtA; Rev 99.8 1.5E-19 3.4E-24 139.5 13.5 146 8-168 159-328 (500)
187 TIGR00491 aIF-2 translation in 99.8 1.2E-19 2.6E-24 143.4 12.9 113 7-126 3-135 (590)
188 PRK09554 feoB ferrous iron tra 99.8 3.7E-19 8.1E-24 144.4 15.2 142 8-168 3-156 (772)
189 TIGR00437 feoB ferrous iron tr 99.8 1.6E-19 3.4E-24 143.3 12.8 134 15-168 1-143 (591)
190 PRK00093 GTP-binding protein D 99.8 1.9E-19 4.2E-24 139.2 12.8 148 7-168 172-332 (435)
191 cd04166 CysN_ATPS CysN_ATPS su 99.8 9.7E-20 2.1E-24 127.9 10.0 150 10-168 1-182 (208)
192 PRK05433 GTP-binding protein L 99.8 1.8E-19 3.9E-24 143.2 12.5 147 6-168 5-172 (600)
193 PRK09518 bifunctional cytidyla 99.8 1.4E-19 3.1E-24 146.8 12.0 144 7-168 449-609 (712)
194 PF10662 PduV-EutP: Ethanolami 99.8 5.9E-20 1.3E-24 119.7 7.6 128 10-168 3-134 (143)
195 COG2229 Predicted GTPase [Gene 99.8 5.6E-19 1.2E-23 117.8 12.4 147 3-167 5-165 (187)
196 cd00880 Era_like Era (E. coli 99.8 3.5E-19 7.6E-24 118.9 11.5 140 13-168 1-152 (163)
197 PRK09518 bifunctional cytidyla 99.8 2.5E-19 5.5E-24 145.3 12.8 141 7-168 274-424 (712)
198 KOG0076 GTP-binding ADP-ribosy 99.8 1.4E-20 3.1E-25 123.9 4.3 149 4-168 13-175 (197)
199 PF00009 GTP_EFTU: Elongation 99.8 8.4E-20 1.8E-24 126.3 6.9 148 7-168 2-175 (188)
200 COG1160 Predicted GTPases [Gen 99.8 4.6E-19 9.9E-24 133.2 10.7 139 9-168 4-153 (444)
201 cd01888 eIF2_gamma eIF2-gamma 99.8 5.5E-19 1.2E-23 123.6 10.4 149 9-168 1-187 (203)
202 KOG4423 GTP-binding protein-li 99.8 1.1E-21 2.3E-26 130.6 -3.2 152 7-168 24-182 (229)
203 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.3E-18 2.8E-23 120.8 11.4 150 8-168 2-171 (195)
204 KOG1707 Predicted Ras related/ 99.8 5.5E-19 1.2E-23 135.4 8.1 153 5-168 6-163 (625)
205 COG1160 Predicted GTPases [Gen 99.8 8.6E-18 1.9E-22 126.4 13.5 150 7-168 177-339 (444)
206 PRK04004 translation initiatio 99.8 6.7E-18 1.5E-22 133.8 13.5 113 6-125 4-136 (586)
207 PRK10512 selenocysteinyl-tRNA- 99.8 6.3E-18 1.4E-22 134.7 13.2 147 10-168 2-154 (614)
208 cd01883 EF1_alpha Eukaryotic e 99.8 2.1E-18 4.5E-23 122.0 9.2 153 10-168 1-193 (219)
209 cd04167 Snu114p Snu114p subfam 99.8 4E-18 8.7E-23 120.1 10.5 112 10-125 2-136 (213)
210 PRK10218 GTP-binding protein; 99.8 1.3E-17 2.8E-22 132.3 14.2 147 7-167 4-172 (607)
211 cd01896 DRG The developmentall 99.8 4E-17 8.6E-22 116.4 15.4 82 10-93 2-91 (233)
212 KOG1423 Ras-like GTPase ERA [C 99.8 2.7E-18 5.8E-23 122.9 8.8 122 5-129 69-202 (379)
213 KOG0072 GTP-binding ADP-ribosy 99.8 1.5E-18 3.2E-23 111.2 6.5 146 6-168 16-167 (182)
214 TIGR03680 eif2g_arch translati 99.7 8E-18 1.7E-22 128.8 9.9 152 6-168 2-184 (406)
215 cd04168 TetM_like Tet(M)-like 99.7 1.4E-17 3.1E-22 118.8 10.5 114 10-127 1-131 (237)
216 TIGR01394 TypA_BipA GTP-bindin 99.7 2E-17 4.4E-22 131.2 11.3 144 9-166 2-167 (594)
217 cd04165 GTPBP1_like GTPBP1-lik 99.7 2.8E-17 6E-22 116.4 10.5 114 10-127 1-153 (224)
218 cd01876 YihA_EngB The YihA (En 99.7 2.6E-17 5.7E-22 111.1 9.8 144 10-168 1-159 (170)
219 TIGR00485 EF-Tu translation el 99.7 3.9E-17 8.4E-22 124.7 11.9 151 5-166 9-179 (394)
220 cd04169 RF3 RF3 subfamily. Pe 99.7 8.2E-17 1.8E-21 116.8 12.9 115 9-127 3-138 (267)
221 PRK12735 elongation factor Tu; 99.7 4E-17 8.7E-22 124.6 11.9 152 5-167 9-180 (396)
222 KOG0077 Vesicle coat complex C 99.7 2.2E-17 4.7E-22 108.2 8.7 117 7-127 19-136 (193)
223 COG0486 ThdF Predicted GTPase 99.7 4.2E-17 9E-22 123.1 10.9 140 6-168 215-364 (454)
224 cd01850 CDC_Septin CDC/Septin. 99.7 2.3E-16 5E-21 115.0 14.4 142 7-161 3-183 (276)
225 CHL00071 tufA elongation facto 99.7 5.2E-17 1.1E-21 124.5 11.6 152 5-168 9-181 (409)
226 KOG1489 Predicted GTP-binding 99.7 1.6E-16 3.5E-21 114.4 12.9 146 9-168 197-355 (366)
227 COG0370 FeoB Fe2+ transport sy 99.7 1.5E-16 3.3E-21 124.7 13.3 141 8-168 3-152 (653)
228 PRK04000 translation initiatio 99.7 5E-17 1.1E-21 124.5 10.4 155 3-168 4-189 (411)
229 PF09439 SRPRB: Signal recogni 99.7 1.3E-17 2.7E-22 113.3 6.0 117 8-127 3-127 (181)
230 cd01885 EF2 EF2 (for archaea a 99.7 2.6E-16 5.7E-21 111.1 12.7 112 10-125 2-138 (222)
231 PRK12736 elongation factor Tu; 99.7 1.4E-16 3.1E-21 121.5 11.7 151 5-166 9-179 (394)
232 cd01886 EF-G Elongation factor 99.7 2.1E-16 4.6E-21 114.8 10.5 143 10-165 1-160 (270)
233 cd04170 EF-G_bact Elongation f 99.7 3.5E-16 7.6E-21 113.9 11.5 141 10-167 1-160 (268)
234 PLN03126 Elongation factor Tu; 99.7 2.3E-16 5E-21 122.4 10.8 152 5-167 78-249 (478)
235 TIGR02034 CysN sulfate adenyly 99.7 2.2E-16 4.7E-21 121.0 10.4 151 9-168 1-185 (406)
236 PRK05124 cysN sulfate adenylyl 99.7 4.9E-16 1.1E-20 120.9 12.0 155 5-168 24-213 (474)
237 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 2.1E-16 4.5E-21 111.7 9.1 149 10-165 1-162 (232)
238 PRK05506 bifunctional sulfate 99.7 3.4E-16 7.4E-21 125.9 10.7 154 6-168 22-209 (632)
239 cd04104 p47_IIGP_like p47 (47- 99.7 9.3E-16 2E-20 106.9 11.5 114 8-127 1-122 (197)
240 PLN00043 elongation factor 1-a 99.7 1E-15 2.2E-20 118.2 11.4 156 5-168 4-201 (447)
241 PRK00049 elongation factor Tu; 99.7 2E-15 4.2E-20 115.4 12.8 151 5-167 9-180 (396)
242 TIGR00484 EF-G translation elo 99.6 3.6E-15 7.7E-20 121.0 12.9 145 5-165 7-171 (689)
243 PF01926 MMR_HSR1: 50S ribosom 99.6 1.1E-15 2.5E-20 97.7 8.0 105 10-121 1-116 (116)
244 COG0218 Predicted GTPase [Gene 99.6 2.2E-15 4.8E-20 102.6 9.7 146 5-168 21-185 (200)
245 PTZ00141 elongation factor 1- 99.6 3.6E-15 7.9E-20 115.2 12.1 155 5-168 4-201 (446)
246 PLN03127 Elongation factor Tu; 99.6 7.5E-15 1.6E-19 113.4 12.2 148 5-164 58-226 (447)
247 PRK00741 prfC peptide chain re 99.6 3.7E-15 8.1E-20 117.0 10.4 118 6-127 8-146 (526)
248 COG0532 InfB Translation initi 99.6 1.3E-14 2.9E-19 111.1 12.7 146 6-168 3-158 (509)
249 COG1084 Predicted GTPase [Gene 99.6 9.2E-15 2E-19 106.0 10.3 145 7-166 167-322 (346)
250 cd01899 Ygr210 Ygr210 subfamil 99.6 2.6E-14 5.6E-19 105.8 12.6 80 11-90 1-110 (318)
251 PRK13351 elongation factor G; 99.6 7.2E-15 1.6E-19 119.4 10.4 119 5-127 5-140 (687)
252 COG2262 HflX GTPases [General 99.6 2.7E-14 5.9E-19 106.4 11.9 144 6-168 190-344 (411)
253 TIGR00503 prfC peptide chain r 99.6 2.4E-14 5.1E-19 112.6 12.0 118 6-127 9-147 (527)
254 KOG1145 Mitochondrial translat 99.6 2.2E-14 4.7E-19 110.0 11.3 144 6-168 151-304 (683)
255 COG0536 Obg Predicted GTPase [ 99.6 3.1E-14 6.7E-19 103.8 11.6 147 10-168 161-321 (369)
256 COG5256 TEF1 Translation elong 99.6 2.3E-14 4.9E-19 106.8 10.8 157 5-168 4-199 (428)
257 PRK00007 elongation factor G; 99.5 6.8E-14 1.5E-18 113.6 11.9 145 5-165 7-171 (693)
258 PRK12739 elongation factor G; 99.5 5.8E-14 1.3E-18 114.0 11.4 117 6-127 6-140 (691)
259 COG0481 LepA Membrane GTPase L 99.5 1.2E-13 2.6E-18 104.4 11.4 150 3-168 4-174 (603)
260 smart00010 small_GTPase Small 99.5 1E-13 2.3E-18 89.2 9.7 89 9-126 1-91 (124)
261 KOG0462 Elongation factor-type 99.5 1.4E-13 3E-18 105.6 11.6 149 6-168 58-223 (650)
262 COG4917 EutP Ethanolamine util 99.5 7.5E-15 1.6E-19 92.2 3.9 128 10-168 3-134 (148)
263 PRK09866 hypothetical protein; 99.5 1.7E-13 3.7E-18 107.8 11.8 101 56-168 230-341 (741)
264 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 2.9E-13 6.4E-18 94.2 11.7 144 9-162 1-161 (196)
265 COG3596 Predicted GTPase [Gene 99.5 1.9E-14 4E-19 102.2 5.4 119 6-128 37-164 (296)
266 TIGR00490 aEF-2 translation el 99.5 4.8E-14 1E-18 114.9 8.2 118 5-126 16-152 (720)
267 KOG3905 Dynein light intermedi 99.5 2.4E-13 5.3E-18 98.6 10.6 154 8-168 52-278 (473)
268 PRK09602 translation-associate 99.5 1.1E-12 2.3E-17 100.0 13.3 82 9-90 2-113 (396)
269 TIGR00991 3a0901s02IAP34 GTP-b 99.5 4.6E-13 1E-17 97.9 10.8 120 5-127 35-168 (313)
270 KOG1707 Predicted Ras related/ 99.5 1.6E-12 3.5E-17 100.4 12.9 145 5-163 422-567 (625)
271 COG2895 CysN GTPases - Sulfate 99.5 7.4E-13 1.6E-17 97.0 10.5 155 5-168 3-191 (431)
272 PTZ00327 eukaryotic translatio 99.5 5.1E-13 1.1E-17 103.3 9.7 153 5-168 31-221 (460)
273 cd01853 Toc34_like Toc34-like 99.5 2.2E-12 4.8E-17 92.6 12.2 122 5-129 28-166 (249)
274 COG1163 DRG Predicted GTPase [ 99.4 1E-11 2.2E-16 90.2 15.0 87 6-94 61-155 (365)
275 KOG1191 Mitochondrial GTPase [ 99.4 5.3E-13 1.2E-17 101.3 8.1 118 7-127 267-404 (531)
276 PF05783 DLIC: Dynein light in 99.4 3.6E-12 7.9E-17 98.6 11.6 156 8-167 25-251 (472)
277 KOG0090 Signal recognition par 99.4 9.9E-13 2.1E-17 90.1 7.4 117 7-127 37-160 (238)
278 PRK14845 translation initiatio 99.4 2.2E-12 4.7E-17 107.5 10.7 100 20-126 473-592 (1049)
279 cd01882 BMS1 Bms1. Bms1 is an 99.4 5.9E-12 1.3E-16 89.4 11.4 142 6-165 37-181 (225)
280 cd00066 G-alpha G protein alph 99.4 2.5E-12 5.4E-17 95.7 9.4 75 54-128 159-244 (317)
281 KOG0705 GTPase-activating prot 99.4 6.2E-13 1.3E-17 102.1 5.6 149 5-168 27-177 (749)
282 TIGR00157 ribosome small subun 99.4 3.1E-12 6.8E-17 91.9 8.5 87 67-168 24-111 (245)
283 PTZ00416 elongation factor 2; 99.4 2.8E-12 6E-17 106.0 8.2 117 5-125 16-157 (836)
284 PRK12740 elongation factor G; 99.3 4.7E-12 1E-16 102.9 9.1 110 14-127 1-127 (668)
285 KOG1490 GTP-binding protein CR 99.3 3.5E-12 7.7E-17 97.2 7.3 152 5-168 165-329 (620)
286 PLN00116 translation elongatio 99.3 3E-12 6.4E-17 106.0 7.2 118 4-125 15-163 (843)
287 PF03029 ATP_bind_1: Conserved 99.3 2.5E-13 5.4E-18 97.0 -1.0 109 57-168 92-225 (238)
288 PRK13768 GTPase; Provisional 99.3 6.2E-12 1.3E-16 90.8 6.1 72 57-128 98-178 (253)
289 COG1217 TypA Predicted membran 99.3 4E-11 8.7E-16 90.9 10.4 146 8-166 5-171 (603)
290 smart00275 G_alpha G protein a 99.3 1.7E-11 3.6E-16 92.0 8.4 74 55-128 183-267 (342)
291 KOG1532 GTPase XAB1, interacts 99.3 4.5E-11 9.7E-16 85.2 9.6 72 55-128 115-197 (366)
292 KOG3886 GTP-binding protein [S 99.3 2.5E-12 5.4E-17 89.2 3.2 150 8-164 4-163 (295)
293 PF04548 AIG1: AIG1 family; I 99.3 5.3E-11 1.2E-15 83.8 9.5 146 9-163 1-163 (212)
294 PTZ00258 GTP-binding protein; 99.3 2.5E-10 5.5E-15 86.5 13.4 84 6-89 19-125 (390)
295 PRK09601 GTP-binding protein Y 99.3 5.4E-10 1.2E-14 83.9 14.7 82 9-90 3-107 (364)
296 PRK07560 elongation factor EF- 99.2 2.2E-11 4.7E-16 99.7 6.5 117 6-126 18-153 (731)
297 TIGR02836 spore_IV_A stage IV 99.2 5.1E-10 1.1E-14 84.6 13.1 142 7-163 16-218 (492)
298 PF00735 Septin: Septin; Inte 99.2 6E-10 1.3E-14 81.5 13.2 118 7-128 3-158 (281)
299 TIGR00101 ureG urease accessor 99.2 2.7E-10 5.9E-15 79.4 10.2 92 56-168 92-184 (199)
300 PF00350 Dynamin_N: Dynamin fa 99.2 9E-11 2E-15 79.6 7.3 62 58-122 103-168 (168)
301 PF05049 IIGP: Interferon-indu 99.2 7.8E-11 1.7E-15 88.4 6.7 113 6-124 33-153 (376)
302 TIGR00073 hypB hydrogenase acc 99.2 5E-10 1.1E-14 78.6 10.1 142 6-168 20-195 (207)
303 KOG0458 Elongation factor 1 al 99.1 6.5E-10 1.4E-14 86.3 10.9 156 6-168 175-370 (603)
304 KOG0468 U5 snRNP-specific prot 99.1 1.7E-10 3.8E-15 90.7 7.6 118 4-125 124-262 (971)
305 TIGR00993 3a0901s04IAP86 chlor 99.1 4E-10 8.8E-15 89.4 9.1 118 7-127 117-251 (763)
306 PRK09435 membrane ATPase/prote 99.1 1.2E-09 2.5E-14 81.5 9.8 95 55-168 148-248 (332)
307 smart00053 DYNc Dynamin, GTPas 99.1 1.4E-09 3.1E-14 77.6 9.8 70 56-128 125-208 (240)
308 COG0480 FusA Translation elong 99.1 1.1E-09 2.5E-14 88.4 9.5 120 5-128 7-144 (697)
309 KOG0461 Selenocysteine-specifi 99.1 2.7E-09 5.7E-14 78.6 10.3 153 1-165 1-174 (522)
310 KOG1144 Translation initiation 99.0 2.1E-09 4.4E-14 85.7 9.0 116 7-126 474-606 (1064)
311 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 3E-09 6.4E-14 70.3 6.5 54 10-66 85-138 (141)
312 TIGR00750 lao LAO/AO transport 98.9 3.1E-09 6.6E-14 78.7 6.7 95 55-168 126-226 (300)
313 COG0012 Predicted GTPase, prob 98.9 1.3E-07 2.8E-12 70.6 14.1 83 8-90 2-108 (372)
314 KOG1547 Septin CDC10 and relat 98.9 1.5E-08 3.3E-13 71.2 8.4 116 7-125 45-197 (336)
315 PRK00098 GTPase RsgA; Reviewed 98.9 1E-08 2.2E-13 75.9 7.8 79 76-168 77-155 (298)
316 KOG3887 Predicted small GTPase 98.9 9E-09 2E-13 72.4 6.9 118 8-129 27-152 (347)
317 COG5257 GCD11 Translation init 98.9 7.8E-09 1.7E-13 75.4 6.6 152 6-168 8-190 (415)
318 KOG2486 Predicted GTPase [Gene 98.8 3.6E-09 7.8E-14 75.7 4.3 117 5-127 133-263 (320)
319 cd01900 YchF YchF subfamily. 98.8 1.9E-08 4.2E-13 73.2 8.2 80 11-90 1-103 (274)
320 COG4108 PrfC Peptide chain rel 98.8 3.1E-08 6.7E-13 75.0 9.4 117 7-127 11-148 (528)
321 COG5019 CDC3 Septin family pro 98.8 1.8E-07 3.9E-12 69.5 12.5 119 6-128 21-178 (373)
322 KOG1486 GTP-binding protein DR 98.8 3.7E-07 8E-12 64.8 13.4 88 7-96 61-156 (364)
323 cd04178 Nucleostemin_like Nucl 98.8 1.9E-08 4.1E-13 68.5 6.7 54 8-65 117-171 (172)
324 KOG0082 G-protein alpha subuni 98.8 1.8E-08 3.9E-13 75.0 6.9 74 55-129 194-279 (354)
325 KOG2655 Septin family protein 98.8 1.4E-07 3.1E-12 70.4 11.5 118 7-128 20-174 (366)
326 cd01854 YjeQ_engC YjeQ/EngC. 98.8 2.7E-08 5.9E-13 73.2 7.6 77 76-168 75-152 (287)
327 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 2.3E-08 4.9E-13 66.0 6.3 78 75-167 7-84 (141)
328 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.9E-08 6.2E-13 66.7 6.8 27 7-33 101-127 (157)
329 COG0378 HypB Ni2+-binding GTPa 98.8 3.8E-08 8.1E-13 67.2 7.3 25 7-31 12-36 (202)
330 PRK12289 GTPase RsgA; Reviewed 98.8 4.5E-08 9.7E-13 73.7 8.5 81 72-168 82-163 (352)
331 KOG0448 Mitofusin 1 GTPase, in 98.8 1.8E-07 3.9E-12 74.3 11.8 145 6-164 107-310 (749)
332 COG3276 SelB Selenocysteine-sp 98.8 2.7E-08 5.9E-13 75.3 6.8 143 10-168 2-150 (447)
333 cd01859 MJ1464 MJ1464. This f 98.8 9.1E-09 2E-13 69.0 3.9 82 70-168 3-84 (156)
334 cd01856 YlqF YlqF. Proteins o 98.7 3.8E-08 8.2E-13 67.1 6.6 56 7-66 114-170 (171)
335 cd01855 YqeH YqeH. YqeH is an 98.7 1.8E-08 3.9E-13 69.8 4.7 83 69-168 24-113 (190)
336 KOG1954 Endocytosis/signaling 98.7 6.5E-08 1.4E-12 72.0 7.5 120 6-128 56-227 (532)
337 PRK10463 hydrogenase nickel in 98.7 7.9E-08 1.7E-12 70.2 7.9 25 7-31 103-127 (290)
338 cd01859 MJ1464 MJ1464. This f 98.7 6.4E-08 1.4E-12 64.9 6.8 55 7-65 100-155 (156)
339 COG0050 TufB GTPases - transla 98.7 1.4E-07 3E-12 68.3 8.5 145 6-163 10-176 (394)
340 TIGR03596 GTPase_YlqF ribosome 98.7 7.6E-08 1.6E-12 70.5 7.4 56 7-66 117-173 (276)
341 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.6E-07 3.5E-12 69.1 7.7 58 6-67 119-177 (287)
342 cd01858 NGP_1 NGP-1. Autoanti 98.6 9.9E-08 2.1E-12 64.1 5.5 79 76-168 5-83 (157)
343 PRK12288 GTPase RsgA; Reviewed 98.6 2.6E-07 5.6E-12 69.6 8.0 79 77-168 118-196 (347)
344 cd01855 YqeH YqeH. YqeH is an 98.6 1.3E-07 2.8E-12 65.5 5.6 25 8-32 127-151 (190)
345 TIGR03597 GTPase_YqeH ribosome 98.6 8.8E-08 1.9E-12 72.6 4.8 86 66-168 50-141 (360)
346 KOG1143 Predicted translation 98.5 5.7E-07 1.2E-11 67.2 8.2 156 7-167 166-375 (591)
347 COG1161 Predicted GTPases [Gen 98.5 2.7E-07 5.8E-12 69.0 6.6 55 7-66 131-187 (322)
348 cd01849 YlqF_related_GTPase Yl 98.5 5.2E-07 1.1E-11 60.5 6.9 55 7-65 99-154 (155)
349 KOG0410 Predicted GTP binding 98.5 6.8E-08 1.5E-12 70.7 2.5 118 7-128 177-310 (410)
350 COG5258 GTPBP1 GTPase [General 98.5 1.1E-06 2.4E-11 65.9 8.2 158 6-167 115-326 (527)
351 PF03193 DUF258: Protein of un 98.5 2.3E-07 5.1E-12 62.1 4.1 23 9-31 36-58 (161)
352 PRK12288 GTPase RsgA; Reviewed 98.4 3.9E-07 8.5E-12 68.7 5.4 22 11-32 208-229 (347)
353 COG5192 BMS1 GTP-binding prote 98.4 2.5E-06 5.5E-11 67.0 9.8 113 7-129 68-180 (1077)
354 cd01851 GBP Guanylate-binding 98.4 3.8E-06 8.3E-11 59.7 9.1 88 5-92 4-104 (224)
355 KOG0467 Translation elongation 98.4 1.1E-06 2.4E-11 70.7 6.8 117 3-123 4-135 (887)
356 PF03308 ArgK: ArgK protein; 98.4 8.2E-08 1.8E-12 68.5 0.5 92 55-168 121-218 (266)
357 cd01849 YlqF_related_GTPase Yl 98.4 1.4E-06 3.1E-11 58.3 6.4 72 81-168 1-73 (155)
358 TIGR03348 VI_IcmF type VI secr 98.4 2E-06 4.3E-11 74.2 8.6 113 11-127 114-258 (1169)
359 PRK12289 GTPase RsgA; Reviewed 98.3 1.1E-06 2.3E-11 66.4 5.9 22 11-32 175-196 (352)
360 TIGR00092 GTP-binding protein 98.3 2.8E-06 6.1E-11 64.2 7.9 82 9-90 3-108 (368)
361 KOG1491 Predicted GTP-binding 98.3 3.8E-06 8.1E-11 62.1 7.4 83 7-89 19-124 (391)
362 KOG0460 Mitochondrial translat 98.3 3.4E-06 7.3E-11 62.4 7.2 147 5-163 51-218 (449)
363 COG1703 ArgK Putative periplas 98.3 5.6E-06 1.2E-10 60.3 7.7 95 52-168 140-242 (323)
364 cd01854 YjeQ_engC YjeQ/EngC. 98.3 1.6E-06 3.4E-11 64.0 5.0 24 9-32 162-185 (287)
365 cd03112 CobW_like The function 98.2 4.5E-06 9.7E-11 56.2 6.4 65 55-124 86-158 (158)
366 PRK14974 cell division protein 98.2 2.4E-06 5.2E-11 64.1 5.4 91 55-168 222-318 (336)
367 TIGR00157 ribosome small subun 98.2 3.4E-06 7.3E-11 60.8 5.9 23 10-32 122-144 (245)
368 TIGR03597 GTPase_YqeH ribosome 98.2 3.4E-06 7.3E-11 64.1 5.6 24 9-32 155-178 (360)
369 KOG0463 GTP-binding protein GP 98.2 1E-05 2.2E-10 60.8 7.7 118 7-128 132-289 (641)
370 PRK10416 signal recognition pa 98.2 2.7E-05 5.9E-10 58.1 9.8 137 7-167 113-297 (318)
371 cd01856 YlqF YlqF. Proteins o 98.2 4.8E-06 1E-10 56.7 5.4 76 74-168 14-89 (171)
372 TIGR00064 ftsY signal recognit 98.2 8.8E-06 1.9E-10 59.5 7.0 90 54-167 153-255 (272)
373 PF09547 Spore_IV_A: Stage IV 98.1 0.00012 2.6E-09 56.1 12.8 141 8-163 17-218 (492)
374 PRK00098 GTPase RsgA; Reviewed 98.1 4.1E-06 8.9E-11 62.1 4.9 23 10-32 166-188 (298)
375 COG1162 Predicted GTPases [Gen 98.1 3.1E-06 6.7E-11 61.9 3.9 22 10-31 166-187 (301)
376 TIGR03596 GTPase_YlqF ribosome 98.1 1E-05 2.2E-10 59.4 6.2 76 74-168 16-91 (276)
377 PRK13796 GTPase YqeH; Provisio 98.1 7.7E-06 1.7E-10 62.3 5.5 23 9-31 161-183 (365)
378 TIGR01425 SRP54_euk signal rec 98.1 1.7E-05 3.7E-10 61.2 7.4 67 55-127 182-254 (429)
379 PRK01889 GTPase RsgA; Reviewed 98.0 2.1E-05 4.6E-10 59.7 7.1 76 77-168 110-185 (356)
380 PF06858 NOG1: Nucleolar GTP-b 98.0 2.3E-05 5E-10 42.9 5.1 43 80-123 14-58 (58)
381 PRK09563 rbgA GTPase YlqF; Rev 98.0 1.5E-05 3.3E-10 58.8 5.8 77 73-168 18-94 (287)
382 KOG1424 Predicted GTP-binding 98.0 1E-05 2.3E-10 62.7 4.6 55 8-66 314-369 (562)
383 PRK13796 GTPase YqeH; Provisio 98.0 2.8E-05 6E-10 59.3 6.9 74 78-168 67-147 (365)
384 KOG0464 Elongation factor G [T 98.0 2.1E-06 4.5E-11 65.2 0.4 118 7-128 36-170 (753)
385 PRK14722 flhF flagellar biosyn 97.9 4.9E-05 1.1E-09 57.8 7.7 22 9-30 138-159 (374)
386 KOG3859 Septins (P-loop GTPase 97.9 5.8E-05 1.3E-09 54.6 7.4 116 7-126 41-190 (406)
387 cd02038 FleN-like FleN is a me 97.9 7.2E-05 1.6E-09 49.2 7.3 108 12-126 4-111 (139)
388 KOG0447 Dynamin-like GTP bindi 97.9 0.00015 3.3E-09 57.1 9.6 71 56-129 412-496 (980)
389 COG3523 IcmF Type VI protein s 97.8 5.5E-05 1.2E-09 64.7 7.0 115 11-127 128-271 (1188)
390 KOG0465 Mitochondrial elongati 97.8 1.7E-05 3.6E-10 62.8 3.2 117 7-127 38-171 (721)
391 PRK00771 signal recognition pa 97.8 4E-05 8.6E-10 59.6 4.9 65 56-127 176-247 (437)
392 KOG1534 Putative transcription 97.7 2.6E-05 5.6E-10 54.2 3.0 23 8-30 3-25 (273)
393 KOG0459 Polypeptide release fa 97.7 5.9E-05 1.3E-09 57.2 5.0 160 5-168 76-274 (501)
394 PRK08118 topology modulation p 97.7 3.2E-05 7E-10 52.5 3.1 23 9-31 2-24 (167)
395 PF13207 AAA_17: AAA domain; P 97.7 3E-05 6.5E-10 49.5 2.7 22 10-31 1-22 (121)
396 KOG3929 Uncharacterized conser 97.7 5.3E-06 1.2E-10 59.2 -1.0 147 7-163 44-235 (363)
397 COG0563 Adk Adenylate kinase a 97.7 3.9E-05 8.5E-10 52.6 3.2 23 9-31 1-23 (178)
398 COG1419 FlhF Flagellar GTP-bin 97.7 0.00027 5.9E-09 53.9 7.8 66 55-127 281-353 (407)
399 PRK12727 flagellar biosynthesi 97.7 0.00026 5.7E-09 56.0 7.9 23 8-30 350-372 (559)
400 KOG2485 Conserved ATP/GTP bind 97.6 8.2E-05 1.8E-09 54.6 4.5 60 6-66 141-206 (335)
401 PRK14721 flhF flagellar biosyn 97.6 0.00028 6E-09 54.6 7.6 23 8-30 191-213 (420)
402 PF00503 G-alpha: G-protein al 97.6 0.00016 3.5E-09 55.6 6.2 72 56-128 236-319 (389)
403 PRK07261 topology modulation p 97.6 5.6E-05 1.2E-09 51.5 3.1 21 10-30 2-22 (171)
404 PF13671 AAA_33: AAA domain; P 97.6 4.9E-05 1.1E-09 49.9 2.6 20 11-30 2-21 (143)
405 TIGR00959 ffh signal recogniti 97.6 0.00018 3.8E-09 55.9 5.9 86 55-161 182-273 (428)
406 KOG0780 Signal recognition par 97.5 4.2E-05 9E-10 57.7 1.9 94 5-98 98-232 (483)
407 PRK14737 gmk guanylate kinase; 97.5 0.00012 2.6E-09 50.6 4.0 23 9-31 5-27 (186)
408 COG1618 Predicted nucleotide k 97.5 0.0025 5.4E-08 42.7 9.7 56 7-64 4-59 (179)
409 KOG1487 GTP-binding protein DR 97.5 0.00089 1.9E-08 48.2 7.9 89 8-101 59-158 (358)
410 PRK14738 gmk guanylate kinase; 97.5 0.00016 3.5E-09 50.8 4.2 26 6-31 11-36 (206)
411 COG0194 Gmk Guanylate kinase [ 97.5 7.9E-05 1.7E-09 50.9 2.5 25 8-32 4-28 (191)
412 KOG0469 Elongation factor 2 [T 97.5 0.00018 3.9E-09 56.2 4.6 117 5-125 16-163 (842)
413 cd02019 NK Nucleoside/nucleoti 97.5 0.00013 2.9E-09 41.9 3.0 21 11-31 2-22 (69)
414 TIGR00235 udk uridine kinase. 97.5 0.00016 3.4E-09 50.8 3.8 27 4-30 2-28 (207)
415 cd02042 ParA ParA and ParB of 97.5 0.00068 1.5E-08 42.0 6.3 82 11-104 2-84 (104)
416 cd00009 AAA The AAA+ (ATPases 97.4 0.00074 1.6E-08 43.8 6.8 25 8-32 19-43 (151)
417 KOG0085 G protein subunit Galp 97.4 3.4E-05 7.5E-10 54.4 0.4 74 55-129 198-283 (359)
418 COG1162 Predicted GTPases [Gen 97.4 0.0012 2.6E-08 48.6 8.2 81 74-168 74-155 (301)
419 PF13521 AAA_28: AAA domain; P 97.4 8.6E-05 1.9E-09 50.1 2.2 22 10-31 1-22 (163)
420 cd01983 Fer4_NifH The Fer4_Nif 97.4 0.0012 2.6E-08 39.8 7.1 68 11-91 2-70 (99)
421 PRK06217 hypothetical protein; 97.4 0.00014 3.1E-09 50.0 3.2 23 9-31 2-24 (183)
422 PRK14723 flhF flagellar biosyn 97.4 0.0012 2.7E-08 54.5 8.8 21 10-30 187-207 (767)
423 KOG4273 Uncharacterized conser 97.4 0.0033 7.2E-08 45.1 9.7 151 8-164 4-194 (418)
424 KOG0466 Translation initiation 97.4 4.8E-05 1E-09 55.8 0.4 147 7-168 37-229 (466)
425 PRK10751 molybdopterin-guanine 97.4 0.00023 4.9E-09 48.5 3.6 25 7-31 5-29 (173)
426 COG0523 Putative GTPases (G3E 97.4 0.0039 8.5E-08 46.8 10.3 90 56-162 85-184 (323)
427 COG1126 GlnQ ABC-type polar am 97.3 0.00022 4.9E-09 49.9 3.3 22 10-31 30-51 (240)
428 PRK14530 adenylate kinase; Pro 97.3 0.0002 4.2E-09 50.6 3.1 22 9-30 4-25 (215)
429 PRK03839 putative kinase; Prov 97.3 0.0002 4.3E-09 49.1 3.1 22 10-31 2-23 (180)
430 PTZ00088 adenylate kinase 1; P 97.3 0.00024 5.2E-09 50.7 3.5 24 7-30 5-28 (229)
431 PRK11537 putative GTP-binding 97.3 0.0024 5.2E-08 47.9 8.8 24 8-31 4-27 (318)
432 COG1116 TauB ABC-type nitrate/ 97.3 0.00022 4.8E-09 50.9 3.1 21 11-31 32-52 (248)
433 smart00382 AAA ATPases associa 97.3 0.00026 5.7E-09 45.6 3.3 24 9-32 3-26 (148)
434 PF00004 AAA: ATPase family as 97.3 0.00023 4.9E-09 45.9 2.9 21 11-31 1-21 (132)
435 COG0541 Ffh Signal recognition 97.3 0.00019 4.1E-09 55.0 2.8 93 6-98 98-231 (451)
436 COG1136 SalX ABC-type antimicr 97.3 0.00022 4.8E-09 50.5 3.0 22 10-31 33-54 (226)
437 KOG2484 GTPase [General functi 97.3 0.00034 7.3E-09 53.0 3.9 57 6-65 250-306 (435)
438 PRK07429 phosphoribulokinase; 97.3 0.00035 7.6E-09 52.5 4.0 30 1-30 1-30 (327)
439 PRK05480 uridine/cytidine kina 97.3 0.00033 7.2E-09 49.2 3.7 26 6-31 4-29 (209)
440 PRK14532 adenylate kinase; Pro 97.3 0.00026 5.7E-09 48.8 3.1 21 10-30 2-22 (188)
441 cd00071 GMPK Guanosine monopho 97.3 0.00029 6.2E-09 46.3 3.1 21 11-31 2-22 (137)
442 PF03266 NTPase_1: NTPase; In 97.3 0.0003 6.5E-09 47.8 3.2 21 10-30 1-21 (168)
443 PF13238 AAA_18: AAA domain; P 97.3 0.00023 4.9E-09 45.6 2.5 21 11-31 1-21 (129)
444 PF13555 AAA_29: P-loop contai 97.2 0.00039 8.5E-09 38.9 3.1 21 10-30 25-45 (62)
445 PRK10078 ribose 1,5-bisphospho 97.2 0.00031 6.8E-09 48.4 3.3 22 10-31 4-25 (186)
446 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00029 6.3E-09 48.4 3.0 22 9-30 4-25 (188)
447 TIGR02322 phosphon_PhnN phosph 97.2 0.00029 6.3E-09 48.2 3.0 22 10-31 3-24 (179)
448 PRK01889 GTPase RsgA; Reviewed 97.2 0.00038 8.3E-09 52.9 3.8 24 9-32 196-219 (356)
449 PF03205 MobB: Molybdopterin g 97.2 0.0003 6.4E-09 46.4 2.7 22 10-31 2-23 (140)
450 PRK14531 adenylate kinase; Pro 97.2 0.00037 8E-09 48.0 3.3 22 9-30 3-24 (183)
451 PF11111 CENP-M: Centromere pr 97.2 0.029 6.3E-07 38.1 12.0 125 7-166 14-139 (176)
452 PRK02496 adk adenylate kinase; 97.2 0.0004 8.7E-09 47.7 3.3 22 9-30 2-23 (184)
453 PF00005 ABC_tran: ABC transpo 97.2 0.00033 7.2E-09 45.6 2.7 22 10-31 13-34 (137)
454 PRK13949 shikimate kinase; Pro 97.2 0.0004 8.7E-09 47.2 3.1 21 10-30 3-23 (169)
455 PF07728 AAA_5: AAA domain (dy 97.2 0.00034 7.4E-09 45.8 2.7 22 10-31 1-22 (139)
456 PRK08233 hypothetical protein; 97.2 0.00047 1E-08 47.1 3.4 24 8-31 3-26 (182)
457 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.0004 8.7E-09 47.6 3.1 20 11-30 2-21 (183)
458 TIGR03263 guanyl_kin guanylate 97.2 0.00042 9E-09 47.4 3.1 22 10-31 3-24 (180)
459 PLN02674 adenylate kinase 97.1 0.00042 9E-09 49.9 3.0 25 6-30 29-53 (244)
460 cd03111 CpaE_like This protein 97.1 0.0018 3.9E-08 40.5 5.6 99 14-121 6-106 (106)
461 cd01428 ADK Adenylate kinase ( 97.1 0.0004 8.8E-09 48.0 2.9 22 10-31 1-22 (194)
462 cd02023 UMPK Uridine monophosp 97.1 0.00044 9.6E-09 48.1 3.0 21 11-31 2-22 (198)
463 TIGR01351 adk adenylate kinase 97.1 0.00042 9E-09 48.8 2.7 21 10-30 1-21 (210)
464 cd02036 MinD Bacterial cell di 97.1 0.0093 2E-07 40.5 9.3 66 57-127 64-129 (179)
465 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00054 1.2E-08 42.9 2.8 21 9-29 16-36 (107)
466 PRK06547 hypothetical protein; 97.1 0.00067 1.4E-08 46.3 3.4 27 5-31 12-38 (172)
467 PRK00625 shikimate kinase; Pro 97.1 0.00059 1.3E-08 46.6 3.1 21 10-30 2-22 (173)
468 KOG3347 Predicted nucleotide k 97.1 0.00049 1.1E-08 45.4 2.5 26 5-30 4-29 (176)
469 PLN02200 adenylate kinase fami 97.1 0.0008 1.7E-08 48.2 3.9 24 7-30 42-65 (234)
470 PRK05541 adenylylsulfate kinas 97.0 0.0008 1.7E-08 45.9 3.7 24 7-30 6-29 (176)
471 PRK14527 adenylate kinase; Pro 97.0 0.00076 1.7E-08 46.7 3.6 23 8-30 6-28 (191)
472 cd04178 Nucleostemin_like Nucl 97.0 0.0015 3.2E-08 44.6 4.9 45 81-127 1-45 (172)
473 PRK00300 gmk guanylate kinase; 97.0 0.00059 1.3E-08 47.7 3.0 24 8-31 5-28 (205)
474 TIGR01313 therm_gnt_kin carboh 97.0 0.00051 1.1E-08 46.2 2.5 21 11-31 1-21 (163)
475 cd01131 PilT Pilus retraction 97.0 0.00064 1.4E-08 47.4 3.0 21 11-31 4-24 (198)
476 PRK00279 adk adenylate kinase; 97.0 0.00069 1.5E-08 47.8 3.1 22 9-30 1-22 (215)
477 PF13401 AAA_22: AAA domain; P 97.0 0.00056 1.2E-08 44.1 2.4 23 9-31 5-27 (131)
478 PF04665 Pox_A32: Poxvirus A32 97.0 0.00076 1.6E-08 48.3 3.2 26 6-31 11-36 (241)
479 cd02025 PanK Pantothenate kina 97.0 0.00064 1.4E-08 48.3 2.8 20 11-30 2-21 (220)
480 PRK14528 adenylate kinase; Pro 97.0 0.0008 1.7E-08 46.5 3.2 22 9-30 2-23 (186)
481 cd03110 Fer4_NifH_child This p 97.0 0.0053 1.2E-07 41.9 7.3 85 54-158 91-175 (179)
482 PRK14529 adenylate kinase; Pro 97.0 0.0008 1.7E-08 47.8 3.2 22 9-30 1-22 (223)
483 TIGR00150 HI0065_YjeE ATPase, 97.0 0.0025 5.4E-08 41.5 5.2 23 9-31 23-45 (133)
484 COG3839 MalK ABC-type sugar tr 97.0 0.00072 1.6E-08 50.8 3.1 21 11-31 32-52 (338)
485 PF05621 TniB: Bacterial TniB 97.0 0.0019 4E-08 47.7 5.1 102 6-121 59-189 (302)
486 cd02021 GntK Gluconate kinase 97.0 0.00078 1.7E-08 44.6 3.0 21 11-31 2-22 (150)
487 PRK06762 hypothetical protein; 97.0 0.00079 1.7E-08 45.4 3.0 23 9-31 3-25 (166)
488 PHA00729 NTP-binding motif con 96.9 0.00093 2E-08 47.4 3.3 24 8-31 17-40 (226)
489 cd01130 VirB11-like_ATPase Typ 96.9 0.0009 2E-08 46.2 3.3 24 8-31 25-48 (186)
490 COG1117 PstB ABC-type phosphat 96.9 0.00073 1.6E-08 47.4 2.6 20 11-30 36-55 (253)
491 PRK13695 putative NTPase; Prov 96.9 0.00092 2E-08 45.6 3.1 22 9-30 1-22 (174)
492 PRK14526 adenylate kinase; Pro 96.9 0.00096 2.1E-08 47.1 3.1 21 10-30 2-22 (211)
493 PRK05057 aroK shikimate kinase 96.9 0.001 2.2E-08 45.4 3.1 23 9-31 5-27 (172)
494 COG0572 Udk Uridine kinase [Nu 96.9 0.0016 3.5E-08 45.8 4.1 25 6-30 6-30 (218)
495 COG3638 ABC-type phosphate/pho 96.9 0.0017 3.6E-08 46.2 4.1 21 10-30 32-52 (258)
496 PF13191 AAA_16: AAA ATPase do 96.9 0.0008 1.7E-08 45.9 2.6 23 8-30 24-46 (185)
497 cd03238 ABC_UvrA The excision 96.9 0.0012 2.5E-08 45.3 3.3 21 9-29 22-42 (176)
498 PF05729 NACHT: NACHT domain 96.9 0.00099 2.1E-08 44.5 3.0 21 11-31 3-23 (166)
499 PRK04040 adenylate kinase; Pro 96.9 0.0011 2.4E-08 45.8 3.3 22 9-30 3-24 (188)
500 COG3840 ThiQ ABC-type thiamine 96.9 0.0011 2.4E-08 45.4 3.0 21 10-30 27-47 (231)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-42 Score=230.04 Aligned_cols=157 Identities=34% Similarity=0.694 Sum_probs=147.8
Q ss_pred CCCCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccC
Q 030961 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (168)
Q Consensus 1 m~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 79 (168)
|...-++.+||+++|++|+|||+|+.||.++.|.+.+..|++.++ .+.+.++++.++++||||+||++|+.+..+++++
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 455667899999999999999999999999999999999999999 4688999999999999999999999999999999
Q ss_pred CcEEEEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
||++|+|||+++++||..+ ..|+.++.++. +++|.++||||+|+...+. ++.++++.++.+++...|+
T Consensus 82 ahGii~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~----------v~~~~a~~fa~~~~~~~f~ 150 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKRV----------VSTEEAQEFADELGIPIFL 150 (205)
T ss_pred CCeEEEEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhhee----------cCHHHHHHHHHhcCCccee
Confidence 9999999999999999999 99999999998 6789999999999999887 9999999999999994499
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
|+||+++.||
T Consensus 151 ETSAK~~~NV 160 (205)
T KOG0084|consen 151 ETSAKDSTNV 160 (205)
T ss_pred ecccCCccCH
Confidence 9999998875
No 2
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-40 Score=218.36 Aligned_cols=152 Identities=36% Similarity=0.582 Sum_probs=143.4
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
+-+.+|++++|..++||||||+||..+.|...|++|++.+| .+++.+.+..+.|++|||.|||+|+.+.+.+++++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 44679999999999999999999999999999999999999 67899999999999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-C-CCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-P-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
|+|||++|..||+.. ..|++.+.+.+ + ++-+++||||.||.+.++ +..+++...+++++. .|+++|
T Consensus 99 viVyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq----------vs~eEg~~kAkel~a-~f~ets 166 (221)
T KOG0094|consen 99 VIVYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ----------VSIEEGERKAKELNA-EFIETS 166 (221)
T ss_pred EEEEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhh----------hhHHHHHHHHHHhCc-EEEEec
Confidence 999999999999998 89999988877 4 477789999999999988 999999999999999 999999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|+.|+||
T Consensus 167 ak~g~NV 173 (221)
T KOG0094|consen 167 AKAGENV 173 (221)
T ss_pred ccCCCCH
Confidence 9999996
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-39 Score=216.90 Aligned_cols=151 Identities=32% Similarity=0.647 Sum_probs=142.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
...+|++++|..++|||||+.||..++|++...+|++--| .+.+.+++..+++.||||.|+++|.++.+.++++|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4589999999999999999999999999998889998777 778999999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
+|||+++.+||..+ +.|+++|++.. +++-+.|+|||+|+...+. +..+++..+++..++ .|||+||+
T Consensus 83 vvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~----------V~~~ea~~yAe~~gl-l~~ETSAK 150 (200)
T KOG0092|consen 83 VVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERRE----------VEFEEAQAYAESQGL-LFFETSAK 150 (200)
T ss_pred EEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhccc----------ccHHHHHHHHHhcCC-EEEEEecc
Confidence 99999999999998 99999999988 5677779999999999776 999999999999999 89999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|.||
T Consensus 151 Tg~Nv 155 (200)
T KOG0092|consen 151 TGENV 155 (200)
T ss_pred cccCH
Confidence 99986
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-39 Score=219.89 Aligned_cols=153 Identities=33% Similarity=0.647 Sum_probs=145.8
Q ss_pred CcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCcE
Q 030961 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (168)
Q Consensus 4 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (168)
+.++.+||+++|+++||||+++.||..+.|...+..|++.+|. +++.+++..+.+++|||.||++|+.+...+++.|.+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 5578999999999999999999999999999999999999995 578999999999999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
+++|||+++..||+.+ ..|+..+.++. +++|.++||||+|+...+. +..+.++++|.++|. .|+|+|
T Consensus 88 i~LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~----------V~~e~ge~lA~e~G~-~F~EtS 155 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQ----------VSKERGEALAREYGI-KFFETS 155 (207)
T ss_pred eEEEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeecccccccccc----------ccHHHHHHHHHHhCC-eEEEcc
Confidence 9999999999999999 67999999998 5899999999999999877 999999999999998 999999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|++|.||
T Consensus 156 Ak~~~NI 162 (207)
T KOG0078|consen 156 AKTNFNI 162 (207)
T ss_pred ccCCCCH
Confidence 9999986
No 5
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.8e-38 Score=217.03 Aligned_cols=160 Identities=88% Similarity=1.411 Sum_probs=142.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
+||+++|++++|||||+.+|..+.|...+.+|++..+.+.+.+++..+.+.+|||+|+++|..+++.++++++++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999999999899999988887778889999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCccCC
Q 030961 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
+++++||+.+.+.|+..+.+..++.|++|||||+|+.+.+.....++..+.+..++++++++.++...|+||||++|.||
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV 161 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNV 161 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCH
Confidence 99999999975689999987777899999999999976543222334445688999999999999756999999999986
No 6
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=2.3e-38 Score=217.75 Aligned_cols=164 Identities=38% Similarity=0.716 Sum_probs=143.0
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
+...+||+++|++++|||||+++|..+.|...+.||.+..+.+.+.+++..+.+.+|||+|++.|..+++.+++++|+++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 45688999999999999999999999999999999998888878889999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhc--CCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
+|||++++.||+.+...|+..+.+..++.|++|||||+|+......... .....+++.+++++++++.++.+|+||||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 9999999999999757899999887788999999999999643111000 11123588999999999999668999999
Q ss_pred cCccC-C
Q 030961 163 KTQQV-C 168 (168)
Q Consensus 163 ~~~~~-i 168 (168)
++|+| |
T Consensus 162 k~~~n~v 168 (182)
T cd04172 162 LQSENSV 168 (182)
T ss_pred CCCCCCH
Confidence 99997 5
No 7
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-39 Score=212.07 Aligned_cols=153 Identities=29% Similarity=0.587 Sum_probs=145.0
Q ss_pred CcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcE
Q 030961 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (168)
Q Consensus 4 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (168)
...+.+|++++|+.|+|||+|+.||...+|...++.|++.+| ...+.+++..+++++|||.|++.|++....+++.+-+
T Consensus 2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 345789999999999999999999999999999999999999 5678999999999999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
+++|||+++++||..+ ..|+..+.++. ++..++++|||+||...+. ++.+++++||++.++ .|+|+|
T Consensus 82 alLVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~----------Vs~EEGeaFA~ehgL-ifmETS 149 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEARRE----------VSKEEGEAFAREHGL-IFMETS 149 (216)
T ss_pred eEEEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhcccc----------ccHHHHHHHHHHcCc-eeehhh
Confidence 9999999999999998 89999999986 8999999999999999887 999999999999998 889999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|++++||
T Consensus 150 akt~~~V 156 (216)
T KOG0098|consen 150 AKTAENV 156 (216)
T ss_pred hhhhhhH
Confidence 9999986
No 8
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1e-37 Score=213.97 Aligned_cols=161 Identities=39% Similarity=0.715 Sum_probs=140.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
.+||+++|++|+|||||+++|.++.|...+.+|.+..+.+.+.+++..+.+++|||+|++.|..+.+.++++++++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 37999999999999999999999999989999998888778888999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh--cCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
|+++++||+.+...|+..+.+..++.|+++||||+|+........ .+....++..++++++++++++.+|+|+||++|
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~ 160 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTS 160 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcC
Confidence 999999999965789999988878899999999999964311110 011124588999999999999768999999999
Q ss_pred cC-C
Q 030961 166 QV-C 168 (168)
Q Consensus 166 ~~-i 168 (168)
+| |
T Consensus 161 ~~~v 164 (178)
T cd04131 161 EKSV 164 (178)
T ss_pred CcCH
Confidence 85 5
No 9
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=4.8e-37 Score=213.03 Aligned_cols=161 Identities=58% Similarity=1.008 Sum_probs=139.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
.+||+++|++++|||||+.+|..+.|...+.+|.+..+.+.+.+++..+.+.+|||+|++.|+.+++.+++++|++++||
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvy 82 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICF 82 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEE
Confidence 58999999999999999999999999889999998888777788999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh--cCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
|++++.||+.+...|...+.+..++.|++|||||+|+.+...... .......+..++++.+++..+..+|+|+||++|
T Consensus 83 dit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g 162 (191)
T cd01875 83 SIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQ 162 (191)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 999999999985479888877667899999999999975432110 111234477889999999998658999999999
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
+||
T Consensus 163 ~~v 165 (191)
T cd01875 163 DGV 165 (191)
T ss_pred CCH
Confidence 986
No 10
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=6.6e-38 Score=207.07 Aligned_cols=159 Identities=33% Similarity=0.576 Sum_probs=145.6
Q ss_pred CCC-CcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCcccccccccccc
Q 030961 1 MAS-SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 78 (168)
Q Consensus 1 m~~-~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 78 (168)
|++ .+...+||+++|++|+|||||.++|.+.+|...+..|++.+| .+.+.+++..+.++||||+|+++|.++.-.+++
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 776 467889999999999999999999999999999999999998 789999999999999999999999999999999
Q ss_pred CCcEEEEEEeCCChhHHHHHHHhHHHHHchhC-C----CCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhC
Q 030961 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYS-P----GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (168)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~----~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (168)
++|-+++|||++++.||+.+ +.|.+++.... + .-|.||+|||+|+..... +.++.+.++.+|...|
T Consensus 81 gaDcCvlvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~--------r~VS~~~Aq~WC~s~g 151 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKS--------RQVSEKKAQTWCKSKG 151 (210)
T ss_pred CCceEEEEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCCcc--------ceeeHHHHHHHHHhcC
Confidence 99999999999999999998 99999988776 2 468999999999976421 3399999999999999
Q ss_pred CcEEEEecccCccCC
Q 030961 154 ASYYIECSSKTQQVC 168 (168)
Q Consensus 154 ~~~~~~~Sa~~~~~i 168 (168)
..+|||+|||.+.||
T Consensus 152 nipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 152 NIPYFETSAKEATNV 166 (210)
T ss_pred CceeEEecccccccH
Confidence 999999999999885
No 11
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=3.3e-37 Score=212.97 Aligned_cols=151 Identities=28% Similarity=0.511 Sum_probs=138.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
.+.+||+++|.+|+|||||+.+|.++.+...+.++.+.++ .+.+.+++..+.+.+|||+|++.|..+++.+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999999988888778877776 456778899999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
+|||+++++||+.+ ..|++++.+..++.|++|||||+|+...+. +..++++.+++..++ +|+|+||++
T Consensus 84 lVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~~~----------v~~~~~~~~a~~~~~-~~~e~SAk~ 151 (189)
T cd04121 84 LVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFKRQ----------VATEQAQAYAERNGM-TFFEVSPLC 151 (189)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhccC----------CCHHHHHHHHHHcCC-EEEEecCCC
Confidence 99999999999999 899999988778999999999999976655 889999999999998 899999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
|.||
T Consensus 152 g~~V 155 (189)
T cd04121 152 NFNI 155 (189)
T ss_pred CCCH
Confidence 9986
No 12
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.3e-36 Score=208.13 Aligned_cols=160 Identities=54% Similarity=0.984 Sum_probs=138.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
+||+++|++|+|||||+++|.++.|...+.||.+..+.+.+.+++..+.+.+|||+|++.+..++..++++++++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 79999999999999999999999998889999988887777888889999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh--cCCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
++++++|+.+...|+..+....++.|+++++||+|+........ .....+.+..++++++++.++...|+|+||++|+
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~ 161 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQK 161 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCC
Confidence 99999999985569988887667899999999999865422111 1122356888999999999885589999999999
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
||
T Consensus 162 ~v 163 (175)
T cd01874 162 GL 163 (175)
T ss_pred CH
Confidence 86
No 13
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=9.7e-37 Score=215.93 Aligned_cols=163 Identities=38% Similarity=0.688 Sum_probs=140.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
...+||+++|++|||||+|+++|..+.|...+.+|++..+.+.+.+++..+.+.+|||+|++.|..+++.++++++++++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 35789999999999999999999999999999999988887788889999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhc--CCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
|||+++++||+.+...|+..+.+..++.|+++||||+|+......... .....++..++++++++..++..|+||||+
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAk 170 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAF 170 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCC
Confidence 999999999998547899999887778999999999998643111100 111245889999999999998679999999
Q ss_pred Ccc-CC
Q 030961 164 TQQ-VC 168 (168)
Q Consensus 164 ~~~-~i 168 (168)
+|+ ||
T Consensus 171 tg~~~V 176 (232)
T cd04174 171 TSEKSI 176 (232)
T ss_pred cCCcCH
Confidence 997 54
No 14
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=9.9e-37 Score=212.47 Aligned_cols=148 Identities=29% Similarity=0.590 Sum_probs=134.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
+.|+++|.+|||||||+++|..+.|...+.+|.+..+ .+.+.+++..+.+++|||+|++.|+.++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4689999999999999999999999888889988776 457888999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHh-CCcEEEEecccCc
Q 030961 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-GASYYIECSSKTQ 165 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~ 165 (168)
|+++++||+.+ ..|+..+.+.. .+.|+++||||+|+...+. +..+++++++.+. ++ .|+++||++|
T Consensus 81 Dvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~a~~~~~~-~~~etSAktg 148 (202)
T cd04120 81 DITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ISRQQGEKFAQQITGM-RFCEASAKDN 148 (202)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCC-EEEEecCCCC
Confidence 99999999998 88999888765 5799999999999976555 8888999999886 66 8999999999
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
+||
T Consensus 149 ~gV 151 (202)
T cd04120 149 FNV 151 (202)
T ss_pred CCH
Confidence 986
No 15
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3e-37 Score=199.87 Aligned_cols=152 Identities=32% Similarity=0.611 Sum_probs=141.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
....+||+++|.+|+|||||+.+|..+.|......|++.+|+ +.+.+++..+++-||||.|+++|+.+.+++++++-++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 456799999999999999999999999998888888999995 5789999999999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
|+|||++.+++|..+ +.|++++..+. +++..++|+||+|...++. ++.+++..+++.+++ -|+|+|
T Consensus 88 IlVYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes~R~----------V~reEG~kfAr~h~~-LFiE~S 155 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKESERV----------VDREEGLKFARKHRC-LFIECS 155 (209)
T ss_pred EEEEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchhccc----------ccHHHHHHHHHhhCc-EEEEcc
Confidence 999999999999999 99999999988 5677789999999887776 999999999999999 899999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|++-+||
T Consensus 156 Akt~~~V 162 (209)
T KOG0080|consen 156 AKTRENV 162 (209)
T ss_pred hhhhccH
Confidence 9998875
No 16
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=3.5e-36 Score=212.08 Aligned_cols=159 Identities=40% Similarity=0.776 Sum_probs=139.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
+||+++|++|||||||+++|.++.|...+.||++..+...+.+++..+.+.+|||+|++.|..+++.+++++|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 79999999999999999999999999999999998888788899999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhc--CCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
++++++|+.+...|...+....++.|++|||||+|+......... .....+++.+++..++++.++.+|+||||++++
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~ 161 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSE 161 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 999999999867888888776688999999999999754221111 122446889999999999997799999999987
Q ss_pred C
Q 030961 167 V 167 (168)
Q Consensus 167 ~ 167 (168)
|
T Consensus 162 ~ 162 (222)
T cd04173 162 R 162 (222)
T ss_pred c
Confidence 4
No 17
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=8.6e-36 Score=203.89 Aligned_cols=160 Identities=63% Similarity=1.082 Sum_probs=138.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
+||+++|.+|||||||+.+|+++.+...+.++....+...+.+++..+++.+|||+|++.+..+++.+++++|++++|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 68999999999999999999999998888999887777777888899999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh--cCCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
++++++|+.+...|+..+....++.|+++|+||+|+...+.... ......+++.++++.++++++..+|+|+||++|+
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 161 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQK 161 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccC
Confidence 99999999985579888877667899999999999964321110 0112345889999999999996689999999999
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
||
T Consensus 162 ~i 163 (174)
T cd01871 162 GL 163 (174)
T ss_pred CH
Confidence 86
No 18
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=5.8e-36 Score=204.40 Aligned_cols=149 Identities=27% Similarity=0.501 Sum_probs=135.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
.+||+++|.+|+|||||+++|.++.+...+.++.+..+.+.+.+++..+.+.+|||+|++.+..+++.+++.++++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 57999999999999999999999999888889998778777888999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
|++++.||..+ ..|...+.+.. ++.|+++|+||+|+...+. +..+++..+++.+++ +|+++||++|
T Consensus 82 d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~Sa~~~ 149 (172)
T cd04141 82 SVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ----------VTTEEGRNLAREFNC-PFFETSAALR 149 (172)
T ss_pred ECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc----------cCHHHHHHHHHHhCC-EEEEEecCCC
Confidence 99999999998 67888777643 5799999999999976654 788899999999998 8999999999
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
.||
T Consensus 150 ~~v 152 (172)
T cd04141 150 HYI 152 (172)
T ss_pred CCH
Confidence 986
No 19
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-36 Score=202.81 Aligned_cols=152 Identities=33% Similarity=0.585 Sum_probs=144.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
-++.+|++++|++++|||-|+.||..+.|.....+|++.++ ...+.++++.+..+||||.||++|+.+...+++++.++
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGA 90 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 90 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccccee
Confidence 46789999999999999999999999999999999999999 55789999999999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
++|||++++.+|+.+ ..|+.+|..+. +++++++||||+||.+.+. +..++++.+++..++ .|+|+||
T Consensus 91 llVYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lra----------V~te~~k~~Ae~~~l-~f~EtSA 158 (222)
T KOG0087|consen 91 LLVYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLRA----------VPTEDGKAFAEKEGL-FFLETSA 158 (222)
T ss_pred EEEEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhccc----------cchhhhHhHHHhcCc-eEEEecc
Confidence 999999999999998 99999999998 7999999999999998877 999999999999998 9999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
..+.||
T Consensus 159 l~~tNV 164 (222)
T KOG0087|consen 159 LDATNV 164 (222)
T ss_pred cccccH
Confidence 999885
No 20
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=5.2e-37 Score=196.23 Aligned_cols=151 Identities=32% Similarity=0.593 Sum_probs=142.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeE-EEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
..-.+.+++|++|+|||+|+.+|..+.|...|..|++.++.. ++.++|..++++|||+.|++.|+.+...+++..++++
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 345688999999999999999999999999999999999964 7889999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
+|||+++.+||.+. ..|++++..+++.+|-++||||.|....+. +..++++.++...++ .+||+||+.
T Consensus 86 vVYDVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv----------V~t~dAr~~A~~mgi-e~FETSaKe 153 (198)
T KOG0079|consen 86 VVYDVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPERRV----------VDTEDARAFALQMGI-ELFETSAKE 153 (198)
T ss_pred EEEECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCcccee----------eehHHHHHHHHhcCc-hheehhhhh
Confidence 99999999999999 899999999999999999999999988877 999999999999999 999999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
++|+
T Consensus 154 ~~Nv 157 (198)
T KOG0079|consen 154 NENV 157 (198)
T ss_pred cccc
Confidence 9885
No 21
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=4.1e-35 Score=199.10 Aligned_cols=149 Identities=30% Similarity=0.623 Sum_probs=133.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
.+||+++|++|+|||||+++|.++.+...+.++.+.++. +.+.+++..+.+.+||+||++.+..++..++++++++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 479999999999999999999999998888888877774 4677888899999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
||++++++|+.+ ..|+..+.... ++.|+++++||+|+...+. +..+++++++...++ +|+++||++|
T Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~ 149 (166)
T cd04122 82 YDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQRD----------VTYEEAKQFADENGL-LFLECSAKTG 149 (166)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-EEEEEECCCC
Confidence 999999999998 88988876655 6789999999999987655 778899999999888 9999999999
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
+||
T Consensus 150 ~~i 152 (166)
T cd04122 150 ENV 152 (166)
T ss_pred CCH
Confidence 986
No 22
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=6.5e-35 Score=197.24 Aligned_cols=149 Identities=30% Similarity=0.551 Sum_probs=132.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
.+||+++|++|||||||++++..+.+...+.+|.+..+.+.+.+++..+.+.+|||||++++..++..++++++++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 37999999999999999999999998888888887667777888999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
|++++++++.+ ..|...+.+.. .+.|+++++||+|+...+. +..+++..+++.++. +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (163)
T cd04136 81 SITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLEDERV----------VSREEGQALARQWGC-PFYETSAKSK 148 (163)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------ecHHHHHHHHHHcCC-eEEEecCCCC
Confidence 99999999998 78888887654 5799999999999976544 677788888888885 9999999999
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
.||
T Consensus 149 ~~v 151 (163)
T cd04136 149 INV 151 (163)
T ss_pred CCH
Confidence 985
No 23
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.6e-34 Score=200.16 Aligned_cols=160 Identities=44% Similarity=0.735 Sum_probs=136.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
.||+++|++|||||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||++|++.+..+++.++++++++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 38999999999999999999999998888899988887777788888999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhc--CCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
++++++|+.+...|+..+....++.|+++|+||+|+...+..... ......+..+++..++...+..+|+++||++|+
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 160 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR 160 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence 999999998844699888876678999999999999765431110 111224677888999988885589999999999
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
||
T Consensus 161 ~v 162 (189)
T cd04134 161 GV 162 (189)
T ss_pred CH
Confidence 86
No 24
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=200.40 Aligned_cols=151 Identities=34% Similarity=0.580 Sum_probs=135.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
.+.+||+++|.+|+|||||+++|.++.+...+.+|.+..+.+.+.+++..+.+.+|||+|++.+..++..+++.++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 34799999999999999999999999988888888888887788889999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
|||++++++|+.+ ..|+..+.+.. ++.|+++++||+|+...+. +..+++..+++.+++ +|+++||+
T Consensus 83 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~Sak 150 (189)
T PTZ00369 83 VYSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSERQ----------VSTGEGQELAKSFGI-PFLETSAK 150 (189)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHhCC-EEEEeeCC
Confidence 9999999999998 78888887654 4789999999999875543 677788888888887 89999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|.||
T Consensus 151 ~~~gi 155 (189)
T PTZ00369 151 QRVNV 155 (189)
T ss_pred CCCCH
Confidence 99986
No 25
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-35 Score=189.45 Aligned_cols=151 Identities=31% Similarity=0.632 Sum_probs=140.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEE-EEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
+...|++++|+..+|||||+.|+.++.|...+..|.+..|+.+ +.-..+.+.+++|||.|++.|+.+...+++++++++
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 4678999999999999999999999999999999999999664 444567799999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
+|||.+|.+||..+ +.|.-+++.+. .+.|+++++||||+..++. ++.+.++.+++++|. .|||+||+
T Consensus 99 LmyDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRv----------is~e~g~~l~~~LGf-efFEtSaK 166 (193)
T KOG0093|consen 99 LMYDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERV----------ISHERGRQLADQLGF-EFFETSAK 166 (193)
T ss_pred EEEecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCcccee----------eeHHHHHHHHHHhCh-HHhhhccc
Confidence 99999999999998 99999999998 7999999999999999887 999999999999999 99999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
.+-||
T Consensus 167 ~NinV 171 (193)
T KOG0093|consen 167 ENINV 171 (193)
T ss_pred ccccH
Confidence 98875
No 26
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.3e-34 Score=196.23 Aligned_cols=149 Identities=29% Similarity=0.551 Sum_probs=133.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
++||+++|.+|||||||++++..+.+...+.++.+..+.+.+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 47999999999999999999999888888888888777777888898999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
|++++.+++.+ ..|...+.... .+.|+++++||+|+..... +..+++..+++.+++ +|+++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (164)
T cd04175 81 SITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWGC-AFLETSAKAK 148 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchhccE----------EcHHHHHHHHHHhCC-EEEEeeCCCC
Confidence 99999999998 77888776543 6799999999999976654 677778889988887 9999999999
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
.||
T Consensus 149 ~~v 151 (164)
T cd04175 149 INV 151 (164)
T ss_pred CCH
Confidence 986
No 27
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=3.1e-34 Score=196.03 Aligned_cols=158 Identities=61% Similarity=1.047 Sum_probs=137.5
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeCC
Q 030961 11 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV 90 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 90 (168)
|+++|++|+|||||+++|.++.+...+.++....+...+.+++..+.+.+|||+|++.+..+++..++++|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 58999999999999999999999888888888888777888899999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh--cCCCCCcccHHHHHHHHHHhCCcEEEEecccCccCC
Q 030961 91 SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 91 ~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
++++|+.+...|+..+.+..++.|+++++||+|+........ ......++..+++..+++..+...|+++||++|.||
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 160 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV 160 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence 999999985679999988778999999999999976432111 122334578899999999999768999999999985
No 28
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.8e-34 Score=200.65 Aligned_cols=149 Identities=29% Similarity=0.472 Sum_probs=131.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEEC-CeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
+||+++|++|||||||+++|.++.+...+.+|.+.++. +.+.++ +..+.+.+|||+|++.+..+++.++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999999998888899987764 456677 7889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhC-----CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 87 FSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
||++++++|+.+ ..|+..+.... .++|++||+||+|+...+. +..+++.++++..+..+|+++|
T Consensus 81 ~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~S 149 (201)
T cd04107 81 FDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA----------KDGEQMDQFCKENGFIGWFETS 149 (201)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCCceEEEEe
Confidence 999999999998 78888776531 4789999999999975444 7788999999999955899999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|++|+||
T Consensus 150 ak~~~~v 156 (201)
T cd04107 150 AKEGINI 156 (201)
T ss_pred CCCCCCH
Confidence 9999986
No 29
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2.5e-34 Score=195.42 Aligned_cols=150 Identities=30% Similarity=0.643 Sum_probs=134.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
+.+||+++|++|+|||||+++|.+.++...+.++.+.++. ..+..++..+.+.+||++|++.+..++..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 5689999999999999999999999998888898887764 466778888999999999999998888899999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
|||++++++|..+ ..|+..+.+.. .+.|+++++||+|+...+. +..+++..++...++ +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (167)
T cd01867 82 VYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKRV----------VSKEEGEALADEYGI-KFLETSAKA 149 (167)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999998 78999888765 5789999999999986544 677888999998888 899999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
|.||
T Consensus 150 ~~~v 153 (167)
T cd01867 150 NINV 153 (167)
T ss_pred CCCH
Confidence 9986
No 30
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=3.4e-34 Score=194.42 Aligned_cols=148 Identities=32% Similarity=0.646 Sum_probs=132.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
+||+++|++|||||||+++|.++++...+.++.+.++. ..+..++..+.+.+||++|++.+..++..++++++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888876663 45666778899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
|++++++++.+ ..|+..+.+.. ++.|+++++||+|+.+.+. +..+++.++++.+++ +++++||++|.
T Consensus 82 d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (165)
T cd01865 82 DITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDERV----------VSSERGRQLADQLGF-EFFEASAKENI 149 (165)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence 99999999998 88999988766 5789999999999976654 677888889998888 89999999999
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
||
T Consensus 150 gv 151 (165)
T cd01865 150 NV 151 (165)
T ss_pred CH
Confidence 86
No 31
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=3.8e-34 Score=193.53 Aligned_cols=148 Identities=33% Similarity=0.642 Sum_probs=133.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
+||+++|++|+|||||+++|.++.+...+.++.+.++ .+.+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 4899999999999999999999999888888888766 456778888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
|++++++|+.+ ..|+..+.... .+.|+++++||+|+...+. +..+++..+++.+++ +|+++||++|.
T Consensus 81 d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~ 148 (161)
T cd04117 81 DISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------VGDEQGNKLAKEYGM-DFFETSACTNS 148 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999998 78999887765 4789999999999976654 778899999999997 89999999999
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
||
T Consensus 149 ~v 150 (161)
T cd04117 149 NI 150 (161)
T ss_pred CH
Confidence 86
No 32
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=7.3e-34 Score=194.21 Aligned_cols=160 Identities=49% Similarity=0.914 Sum_probs=136.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
+|++++|++|+|||||++++.++.+...+.+|..+.+...+.+++..+.+.+||+||++.+..+++.+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 58999999999999999999999998888888877777778888888999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhh--hcCCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL--ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
++++.+|+.+...|+..+....++.|+++++||+|+....... ......+.+..+++..+++..+..+|+++||++|.
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~ 160 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK 160 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 9999999998567888888765789999999999986432100 01112345788899999999987789999999999
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
||
T Consensus 161 ~v 162 (173)
T cd04130 161 NL 162 (173)
T ss_pred CH
Confidence 86
No 33
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=3.2e-34 Score=196.98 Aligned_cols=151 Identities=38% Similarity=0.619 Sum_probs=132.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEEC----------CeEEEEEEEeCCCCcccccccc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAE----------GTTVNLGLWDTAGQEDYNRLRP 74 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~ 74 (168)
.+.+||+++|++|||||||+++|.++.+...+.++.+.++. ..+... +..+.+.+||++|++.+..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 35799999999999999999999999998888888877663 344433 4578999999999999999999
Q ss_pred ccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHh
Q 030961 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 152 (168)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (168)
.+++++|++++|||+++++++..+ ..|+..+.... ++.|+++|+||+|+...+. +..+++..++..+
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------v~~~~~~~~~~~~ 150 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ----------VSEEQAKALADKY 150 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhcCc----------cCHHHHHHHHHHc
Confidence 999999999999999999999998 88999887754 5789999999999976654 7788899999999
Q ss_pred CCcEEEEecccCccCC
Q 030961 153 GASYYIECSSKTQQVC 168 (168)
Q Consensus 153 ~~~~~~~~Sa~~~~~i 168 (168)
++ +++++||++|.||
T Consensus 151 ~~-~~~e~Sak~~~~v 165 (180)
T cd04127 151 GI-PYFETSAATGTNV 165 (180)
T ss_pred CC-eEEEEeCCCCCCH
Confidence 97 8999999999986
No 34
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=6e-34 Score=201.21 Aligned_cols=150 Identities=28% Similarity=0.470 Sum_probs=131.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
+...+||+++|.+|||||||+++++.+.+...+.+|.+..+ ...+..++..+.+.+|||+|++.+..++..++++++++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 46789999999999999999999999999888899987666 44666778889999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
++|||+++++++..+ ..|+..+.+..++.|+++||||+|+.... +..+++ .+++..++ +|+++||+
T Consensus 90 ilvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~~-~~~~~~~~-~~~e~SAk 155 (219)
T PLN03071 90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------VKAKQV-TFHRKKNL-QYYEISAK 155 (219)
T ss_pred EEEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhhcc-----------CCHHHH-HHHHhcCC-EEEEcCCC
Confidence 999999999999998 89999998877789999999999996432 334444 67777777 89999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|.||
T Consensus 156 ~~~~i 160 (219)
T PLN03071 156 SNYNF 160 (219)
T ss_pred CCCCH
Confidence 99986
No 35
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=5.4e-34 Score=197.08 Aligned_cols=154 Identities=50% Similarity=0.919 Sum_probs=133.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEEC-CeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
+||+++|++|+|||||+++|.++.+...+.++.+..+...+... +..+.+.+|||+|++.+..+++.+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999998888888888776666665 77899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCccC
Q 030961 88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQV 167 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (168)
|++++.+|+.+...|+..+....++.|+++++||+|+..... ....+..+++++++..+++.+++++||++|.|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN------LDRKVTPAQAESVAKKQGAFAYLECSAKTMEN 154 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc------ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence 999999999985578888876667899999999999975431 11236788999999999876899999999998
Q ss_pred C
Q 030961 168 C 168 (168)
Q Consensus 168 i 168 (168)
|
T Consensus 155 v 155 (187)
T cd04132 155 V 155 (187)
T ss_pred H
Confidence 6
No 36
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=7.2e-34 Score=192.29 Aligned_cols=149 Identities=28% Similarity=0.566 Sum_probs=131.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
++||+++|.+|+|||||++++.++.+...+.++....+...+.+++..+.+.+|||+|++++..+++.+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999999999888888876556667888888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
|++++.++.++ ..|...+.+.. .+.|+++++||+|+...+. +..+++..++..+++ +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (163)
T cd04176 81 SLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLESERE----------VSSAEGRALAEEWGC-PFMETSAKSK 148 (163)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence 99999999998 78888887754 5799999999999975443 666778888888887 8999999999
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
.||
T Consensus 149 ~~v 151 (163)
T cd04176 149 TMV 151 (163)
T ss_pred CCH
Confidence 985
No 37
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-35 Score=188.84 Aligned_cols=156 Identities=30% Similarity=0.546 Sum_probs=144.9
Q ss_pred CCCCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccC
Q 030961 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (168)
Q Consensus 1 m~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 79 (168)
|+..-++-+|++++|+.|.|||+|+++|+..+|..+...|++.+| .+.+.+.++.++++||||.|+++|++....++++
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 344456788999999999999999999999999999999999999 5677889999999999999999999999999999
Q ss_pred CcEEEEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
+-+.++|||++++++|+.+ ..|+....... +++-+++++||.|+.+.++ ++-.++..+|.+..+ -+.
T Consensus 82 AAGAlLVYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~----------VtflEAs~FaqEnel-~fl 149 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFL 149 (214)
T ss_pred ccceEEEEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhh----------hhHHHHHhhhcccce-eee
Confidence 9999999999999999998 89999888877 6788899999999999988 999999999999998 899
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
|+||++|+||
T Consensus 150 ETSa~TGeNV 159 (214)
T KOG0086|consen 150 ETSALTGENV 159 (214)
T ss_pred eecccccccH
Confidence 9999999986
No 38
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=3.3e-34 Score=198.69 Aligned_cols=147 Identities=37% Similarity=0.624 Sum_probs=131.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (168)
||+++|.+|||||||+++|..+.+...+.++.+..+.+...+++..+.+.+|||+|++++..++..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999999988888888877766777888889999999999999999999999999999999999
Q ss_pred CChhHHHHHHHhHHHHHchhC----CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 90 VSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 90 ~~~~s~~~~~~~~~~~l~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
+++++|+.+ ..|+..+.... ++.|+++|+||+|+...+. +..+++..++..+++ +|+++||++|
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SAk~~ 148 (190)
T cd04144 81 TSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVYERE----------VSTEEGAALARRLGC-EFIEASAKTN 148 (190)
T ss_pred CCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence 999999998 78888776543 4689999999999976554 777788889998997 8999999999
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
.||
T Consensus 149 ~~v 151 (190)
T cd04144 149 VNV 151 (190)
T ss_pred CCH
Confidence 986
No 39
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=2.3e-33 Score=191.68 Aligned_cols=160 Identities=54% Similarity=0.990 Sum_probs=137.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
+||+++|++|+|||||+++|.++.+...+.++....+...+.+++..+.+.+|||+|++.+..+++.++++++++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999998888888877777778888889999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhh--hcCCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL--ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
+.++.+|+.+...|+..+....++.|+++++||+|+.+..... ........+..++++.+++.+++.+|+++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 160 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK 160 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence 9999999998667888887666789999999999987543211 11233345778899999999998789999999999
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
||
T Consensus 161 gi 162 (174)
T cd04135 161 GL 162 (174)
T ss_pred CH
Confidence 86
No 40
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=9.3e-34 Score=192.35 Aligned_cols=149 Identities=31% Similarity=0.676 Sum_probs=133.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
.+||+++|.+|||||||+++|.++.+...+.++.+.++ .+.+..++..+.+.+||+||++.+..++..++++++++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999988887788887666 45677788889999999999999999989999999999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
||+++++++..+ ..|+..+.+.. ++.|+++++||+|+...+. +..+++..++...++ +++++||++|
T Consensus 82 ~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (166)
T cd01869 82 YDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKRV----------VDYSEAQEFADELGI-PFLETSAKNA 149 (166)
T ss_pred EECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence 999999999998 78999888766 6789999999999876654 778889999999988 8999999999
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
+||
T Consensus 150 ~~v 152 (166)
T cd01869 150 TNV 152 (166)
T ss_pred cCH
Confidence 986
No 41
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=9.5e-34 Score=192.16 Aligned_cols=151 Identities=32% Similarity=0.562 Sum_probs=133.8
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
+.+||+++|++|+|||||++++.++.+...+.++.+.++ .+.+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 568999999999999999999999988877778877665 4567788888899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
|||+++++++..+ ..|+..+.... .+.|+++|+||+|+...+. +..+++..+++.++...++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (165)
T cd01864 82 AYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQRE----------VLFEEACTLAEKNGMLAVLETSAKE 150 (165)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCCcEEEEEECCC
Confidence 9999999999998 88999988765 6799999999999976654 7778899999998876899999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
|.|+
T Consensus 151 ~~~v 154 (165)
T cd01864 151 SQNV 154 (165)
T ss_pred CCCH
Confidence 9985
No 42
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.1e-33 Score=194.70 Aligned_cols=152 Identities=29% Similarity=0.546 Sum_probs=128.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
+||+++|++|+|||||+++|.++.|...+.+|.+.++ .+.+.+++..+.+.+||++|++.|..+++.++++++++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999888899998776 457888899999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
|++++++++.+ ..|+..+.+.. ...| ++|+||+|+..... ........++++++++..++ +++++||++|+
T Consensus 81 D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~-----~~~~~~~~~~~~~~a~~~~~-~~~e~SAk~g~ 152 (182)
T cd04128 81 DLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLFADLP-----PEEQEEITKQARKYAKAMKA-PLIFCSTSHSI 152 (182)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhcccccc-----chhhhhhHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999998 88999887765 3456 67899999963210 00001234678889999997 89999999999
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
||
T Consensus 153 ~v 154 (182)
T cd04128 153 NV 154 (182)
T ss_pred CH
Confidence 86
No 43
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1.1e-33 Score=191.96 Aligned_cols=148 Identities=25% Similarity=0.478 Sum_probs=129.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
+||+++|.+|+|||||+++++++.+...+.++.+..+......+...+.+.+|||+|++.+..++..+++.++++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 78999999999999999999999988888888877776666777888999999999999999888888999999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhC----CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 89 LVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
++++++++.+ ..|+..+.+.. +++|+++|+||+|+...+. +..+++..++..+++ +|+++||++
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SA~~ 149 (165)
T cd04140 82 VTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE----------VSSNEGAACATEWNC-AFMETSAKT 149 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccccCe----------ecHHHHHHHHHHhCC-cEEEeecCC
Confidence 9999999998 77877766542 5789999999999976544 777788888888887 899999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
|+||
T Consensus 150 g~~v 153 (165)
T cd04140 150 NHNV 153 (165)
T ss_pred CCCH
Confidence 9985
No 44
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.4e-33 Score=196.88 Aligned_cols=151 Identities=32% Similarity=0.558 Sum_probs=135.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
+..+||+++|++|+|||||+++|.+..+...+.+|.+.++ ...+.+++..+.+.+||+||++.+..++..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 4579999999999999999999999998888888887666 346677888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
+|||++++++|..+ ..|+..+....+..|++||+||+|+..... +..+++..++...++ +|+++||++
T Consensus 84 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~ 151 (199)
T cd04110 84 VVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPERKV----------VETEDAYKFAGQMGI-SLFETSAKE 151 (199)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEECCC
Confidence 99999999999998 889999888777899999999999976554 677888999998887 899999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
|.||
T Consensus 152 ~~gi 155 (199)
T cd04110 152 NINV 155 (199)
T ss_pred CcCH
Confidence 9986
No 45
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=9.8e-34 Score=191.78 Aligned_cols=148 Identities=34% Similarity=0.618 Sum_probs=131.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
+||+++|++|||||||+++|.+..+...+.++.+..+.+...+++..+.+.+|||||++++..++..+++.++++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999988888888877777777888889999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 89 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
++++++++.+ ..|...+.+.. .+.|+++++||+|+...+. +..+++..+++.++. +|+++||++|+
T Consensus 81 ~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (164)
T smart00173 81 ITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESERV----------VSTEEGKELARQWGC-PFLETSAKERV 148 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------EcHHHHHHHHHHcCC-EEEEeecCCCC
Confidence 9999999998 78877776654 4789999999999976544 677888889988886 99999999999
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
||
T Consensus 149 ~i 150 (164)
T smart00173 149 NV 150 (164)
T ss_pred CH
Confidence 85
No 46
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.2e-33 Score=190.98 Aligned_cols=148 Identities=33% Similarity=0.576 Sum_probs=132.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEEC--CeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAE--GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
+||+++|.+++|||||+++|.++.+...+.++.+.++ ...+.+. +..+.+++||+||++.+..++..++++++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999988888888888776 4456666 778999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
|||+++++++..+ ..|+..+.+..++.|+++++||+|+...+. +..+++..+++.+++ +++++||++|
T Consensus 81 v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (162)
T cd04106 81 VFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLDQAV----------ITNEEAEALAKRLQL-PLFRTSVKDD 148 (162)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence 9999999999998 889998887667899999999999976654 677889999999998 9999999999
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
.|+
T Consensus 149 ~~v 151 (162)
T cd04106 149 FNV 151 (162)
T ss_pred CCH
Confidence 885
No 47
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1.4e-33 Score=190.85 Aligned_cols=150 Identities=34% Similarity=0.576 Sum_probs=132.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
+.+||+++|++|+|||||++++++..+...+.++.+..+.....+++..+.+.+|||||++++..++..+++++|++++|
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 35899999999999999999999988888888888777766777888889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 87 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
||++++.+++.+ ..|+..+.+.. .+.|+++++||+|+...+. +..+++.++++..+. +++++||++
T Consensus 81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (164)
T cd04145 81 FSVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQRK----------VSREEGQELARKLKI-PYIETSAKD 148 (164)
T ss_pred EECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCccccccce----------ecHHHHHHHHHHcCC-cEEEeeCCC
Confidence 999999999998 78888877653 5789999999999976544 677788899998887 899999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
|.||
T Consensus 149 ~~~i 152 (164)
T cd04145 149 RLNV 152 (164)
T ss_pred CCCH
Confidence 9986
No 48
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.8e-33 Score=189.73 Aligned_cols=148 Identities=39% Similarity=0.611 Sum_probs=131.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
.+||+++|++|||||||+++|.++.+...+.++.+..+.+.+.+++..+.+.+||++|++.+..++..+++.++++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 37999999999999999999999998888888888777777888888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
|++++.++..+ ..|...+.+.. .+.|+++++||+|+.... +..+++..++..++. +++++||++|
T Consensus 81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (162)
T cd04138 81 AINSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VSSRQGQDLAKSYGI-PYIETSAKTR 147 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccce-----------ecHHHHHHHHHHhCC-eEEEecCCCC
Confidence 99999999998 77887777654 578999999999997532 567788888888888 8999999999
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
.||
T Consensus 148 ~gi 150 (162)
T cd04138 148 QGV 150 (162)
T ss_pred CCH
Confidence 986
No 49
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=100.00 E-value=2.6e-34 Score=195.30 Aligned_cols=163 Identities=64% Similarity=1.069 Sum_probs=150.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEEC-CeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
...+|+++||+.++|||+|+..+..+.|.+.|.||.++.|...+.++ +..+.+.+|||.|++.|..+++..+.++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35789999999999999999999999999999999999999999995 99999999999999999999989999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchh--hhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY--LADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
+||++.++.||+++...|+.++.+++++.|+++||+|.||..+... ........++..+++..++++.|+..|+|+||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 9999999999999999999999999999999999999999965433 23345678899999999999999989999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++..|+
T Consensus 162 ~tq~~v 167 (198)
T KOG0393|consen 162 LTQKGV 167 (198)
T ss_pred hhhCCc
Confidence 999885
No 50
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=3.9e-33 Score=193.66 Aligned_cols=158 Identities=39% Similarity=0.609 Sum_probs=124.6
Q ss_pred eeEEEEECCCCCCHHHHHH-HHhcCC-----CCCCCCCcee--eceeEE--------EEECCeEEEEEEEeCCCCccccc
Q 030961 8 FIKCVTVGDGAVGKTCMLI-CYTSNK-----FPTDYIPTVF--DNFSAN--------VVAEGTTVNLGLWDTAGQEDYNR 71 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~-~l~~~~-----~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~ 71 (168)
.+||+++|++|+|||||+. ++.+.. +...+.||++ ..+... ..+++..+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 665543 4456778875 333322 25788899999999999975 3
Q ss_pred cccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh---------cCCCCCcccH
Q 030961 72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA---------DHPGLVPVTT 142 (168)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~---------~~~~~~~~~~ 142 (168)
+...+++++|++++|||++++.||+.+...|+..+.+..++.|+++||||+|+........ .....++++.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 5566889999999999999999999984469998887767899999999999964211000 0011356899
Q ss_pred HHHHHHHHHhCCcEEEEecccCccCC
Q 030961 143 AQGEELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
++++++++++++ +|+||||++|+||
T Consensus 160 ~e~~~~a~~~~~-~~~E~SAkt~~~V 184 (195)
T cd01873 160 ETGRAVAKELGI-PYYETSVVTQFGV 184 (195)
T ss_pred HHHHHHHHHhCC-EEEEcCCCCCCCH
Confidence 999999999998 9999999999986
No 51
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=2.2e-33 Score=190.29 Aligned_cols=150 Identities=32% Similarity=0.570 Sum_probs=133.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
..+||+++|.++||||||+++|.+..+...+.++.+.++ .+.+..++..+.+.+||+||++.+..+++.++++++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 468999999999999999999999998888888888776 4567788888999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhCC-CCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
|||++++.++..+ ..|+..+.+... +.|+++++||+|+...+. +..++...++...++ +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (165)
T cd01868 82 VYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTEEAKAFAEKNGL-SFIETSALD 149 (165)
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------CCHHHHHHHHHHcCC-EEEEEECCC
Confidence 9999999999998 789998887764 699999999999976654 677888899988887 899999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
|.||
T Consensus 150 ~~~v 153 (165)
T cd01868 150 GTNV 153 (165)
T ss_pred CCCH
Confidence 9985
No 52
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1.2e-33 Score=191.02 Aligned_cols=147 Identities=39% Similarity=0.770 Sum_probs=135.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
||+++|+++||||||+++|.++.+...+.+|.+.+. .+.+.+++..+.+.+||++|++.+..+....+++++++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999999998899985554 6788899999999999999999998888889999999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhCC-CCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCccC
Q 030961 89 LVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQV 167 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (168)
+++++|++.+ ..|+..+....+ +.|++|+|||+|+...+. +..++++++++.++. +|+++||+++.|
T Consensus 81 ~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 148 (162)
T PF00071_consen 81 VTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDERE----------VSVEEAQEFAKELGV-PYFEVSAKNGEN 148 (162)
T ss_dssp TTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGSS----------SCHHHHHHHHHHTTS-EEEEEBTTTTTT
T ss_pred cccccccccc-ccccccccccccccccceeeecccccccccc----------chhhHHHHHHHHhCC-EEEEEECCCCCC
Confidence 9999999999 799999999886 799999999999988655 889999999999995 999999999988
Q ss_pred C
Q 030961 168 C 168 (168)
Q Consensus 168 i 168 (168)
|
T Consensus 149 v 149 (162)
T PF00071_consen 149 V 149 (162)
T ss_dssp H
T ss_pred H
Confidence 5
No 53
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=4.4e-33 Score=189.72 Aligned_cols=152 Identities=34% Similarity=0.617 Sum_probs=133.0
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
+...+||+++|++|+|||||+++|.++.+...+.++.+.++ .+.+.+++..+.+.+||+||++.+..++..+++++|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 45679999999999999999999999998887788887766 45777889999999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-----CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
++|||++++++++.+ ..|...+.... .+.|+++++||+|+.. +. +..++++++++.++..+++
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~----------~~~~~~~~~~~~~~~~~~~ 149 (170)
T cd04116 82 LLTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIPE-RQ----------VSTEEAQAWCRENGDYPYF 149 (170)
T ss_pred EEEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECccccc-cc----------cCHHHHHHHHHHCCCCeEE
Confidence 999999999999998 78888775533 4689999999999863 22 6788899999999866899
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|+||
T Consensus 150 e~Sa~~~~~v 159 (170)
T cd04116 150 ETSAKDATNV 159 (170)
T ss_pred EEECCCCCCH
Confidence 9999999985
No 54
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=2.4e-33 Score=190.14 Aligned_cols=148 Identities=25% Similarity=0.539 Sum_probs=131.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
+||+++|.+|||||||+++|.+..+...+.++.+.++ .+.+.+++..+.+.+|||+|++.+..+++.++++++++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888889988777 456778889999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC------CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 88 SLVSRASYENVLKKWIPELQHYS------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
|++++.++..+ ..|+..+.+.. .+.|+++|+||+|+..... +..+++..++...+. +++++|
T Consensus 81 D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 148 (168)
T cd04119 81 DVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA----------VSEDEGRLWAESKGF-KYFETS 148 (168)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcccccc----------cCHHHHHHHHHHcCC-eEEEEE
Confidence 99999999998 88999887764 3589999999999975443 678888889988886 899999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|++|+||
T Consensus 149 a~~~~gi 155 (168)
T cd04119 149 ACTGEGV 155 (168)
T ss_pred CCCCCCH
Confidence 9999986
No 55
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=3.6e-33 Score=190.28 Aligned_cols=149 Identities=30% Similarity=0.522 Sum_probs=129.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
||+++|.+|||||||+++|+++.|...+.+|.+..+. +.+.+++..+.+++|||||++.|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999999999899999987774 567788889999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 89 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
+++++++..+ ..|+..+.+.. .+.|+++|+||+|+.+... .....+++..++++++. +|+++||++|.
T Consensus 82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~--------~~~~~~~~~~~~~~~~~-~~~e~Sa~~g~ 151 (170)
T cd04108 82 LTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ--------YALMEQDAIKLAAEMQA-EYWSVSALSGE 151 (170)
T ss_pred CcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCcccc--------ccccHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 9999999998 78998876543 3578999999999865422 11356778888888887 89999999999
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
||
T Consensus 152 ~v 153 (170)
T cd04108 152 NV 153 (170)
T ss_pred CH
Confidence 86
No 56
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=3.1e-33 Score=197.27 Aligned_cols=148 Identities=29% Similarity=0.433 Sum_probs=131.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECC-eEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEG-TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
+||+++|++|||||||+++|.+..+...+.+|.+.++ .+.+.+++ ..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888899998665 45666654 579999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhC----CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 87 FSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
||++++++|+.+ ..|+..+.+.. .+.|+++|+||+|+...+. +..+++..+++.+++ +++++||
T Consensus 81 ~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~~~~~~~-~~~~iSA 148 (215)
T cd04109 81 YDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT----------VKDDKHARFAQANGM-ESCLVSA 148 (215)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEEC
Confidence 999999999998 88999888764 2468999999999976554 788899999999997 8999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|+||
T Consensus 149 ktg~gv 154 (215)
T cd04109 149 KTGDRV 154 (215)
T ss_pred CCCCCH
Confidence 999986
No 57
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=4.1e-33 Score=196.69 Aligned_cols=152 Identities=30% Similarity=0.548 Sum_probs=136.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
.++.+||+++|++|||||||+++|.+..+...+.++.+.++ .+.+.+++..+.+.+||++|++++..++..+++.++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 34779999999999999999999999998888888888777 56778889899999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
++|||++++.+|+.+ ..|+..+.+.. .+.|+++++||+|+...+. +..++++.++..+++ +|+++||
T Consensus 89 ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~SA 156 (216)
T PLN03110 89 LLVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHLRS----------VAEEDGQALAEKEGL-SFLETSA 156 (216)
T ss_pred EEEEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 88999888765 5799999999999976655 778889999998887 9999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|.||
T Consensus 157 ~~g~~v 162 (216)
T PLN03110 157 LEATNV 162 (216)
T ss_pred CCCCCH
Confidence 999986
No 58
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=8.4e-33 Score=187.81 Aligned_cols=146 Identities=30% Similarity=0.540 Sum_probs=126.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
+||+++|++|||||||+++++.+.+...+.++.+.++ ...+..++..+.+.+|||+|++.+..++..++..+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999999888888888887666 345666788899999999999999888899999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCccC
Q 030961 88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQV 167 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (168)
|+++++++..+ +.|+..+.+...+.|+++|+||+|+.... +. .+..+++...++ +++++||++|+|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~~~~-----------~~-~~~~~~~~~~~~-~~~e~Sa~~~~~ 146 (166)
T cd00877 81 DVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIKDRK-----------VK-AKQITFHRKKNL-QYYEISAKSNYN 146 (166)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhccccc-----------CC-HHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 99999999998 88999998877789999999999997332 22 334566666666 899999999998
Q ss_pred C
Q 030961 168 C 168 (168)
Q Consensus 168 i 168 (168)
|
T Consensus 147 v 147 (166)
T cd00877 147 F 147 (166)
T ss_pred h
Confidence 6
No 59
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.8e-33 Score=195.22 Aligned_cols=150 Identities=33% Similarity=0.557 Sum_probs=131.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEE-CCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
+.+||+++|++|+|||||+++|.+..+...+.++.+.++ .+.+.+ ++..+.+++|||+|++.+..++..+++++|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 368999999999999999999999998888888887666 445555 467899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
+|||++++++|+.+ ..|+..+.+.. ...|++|++||+|+...+. +..+++..+++.+++ +|+++||
T Consensus 81 lv~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa 148 (211)
T cd04111 81 LVFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQRQ----------VTREEAEKLAKDLGM-KYIETSA 148 (211)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHhCC-EEEEEeC
Confidence 99999999999998 78998887654 3578899999999987554 788889999999996 9999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|+||
T Consensus 149 k~g~~v 154 (211)
T cd04111 149 RTGDNV 154 (211)
T ss_pred CCCCCH
Confidence 999986
No 60
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8.8e-33 Score=191.22 Aligned_cols=148 Identities=31% Similarity=0.532 Sum_probs=132.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
+||+++|++|||||||+++|.++.+...+.++.+.++ .+.+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999999877888888766 456778888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
|+++++++..+ ..|+..+.... .+.|+++++||+|+..... +..+++..+++.+++ +++++||++|.
T Consensus 81 d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~evSa~~~~ 148 (188)
T cd04125 81 DVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNNKV----------VDSNIAKSFCDSLNI-PFFETSAKQSI 148 (188)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCccccc----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 99999999998 77999888765 5689999999999986554 678888899998888 89999999998
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
||
T Consensus 149 ~i 150 (188)
T cd04125 149 NV 150 (188)
T ss_pred CH
Confidence 85
No 61
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=8.3e-33 Score=186.73 Aligned_cols=148 Identities=31% Similarity=0.588 Sum_probs=131.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
+||+++|++|+|||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+||+||++.+..++..+++.++++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998887788887666 456777888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
|+++++++..+ ..|+..+.... ++.|+++++||+|+...+. +..+++..++...++ .++++||+++.
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (161)
T cd04113 81 DITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQRE----------VTFLEASRFAQENGL-LFLETSALTGE 148 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchhcc----------CCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence 99999999998 78988877655 6899999999999976554 778889999999996 99999999999
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
||
T Consensus 149 ~i 150 (161)
T cd04113 149 NV 150 (161)
T ss_pred CH
Confidence 85
No 62
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1.1e-32 Score=187.49 Aligned_cols=150 Identities=29% Similarity=0.597 Sum_probs=132.8
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
..+||+++|.+|+|||||++++.+..+...+.++.+.++ ...+.+++....+.+||++|++++..+...+++++|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999988777777877666 4566778888899999999999998888889999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
|||++++.++..+ ..|+..+.+.. ++.|+++++||.|+...+. +..++++.++...++ +++++||++
T Consensus 83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~ 150 (168)
T cd01866 83 VYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRRE----------VSYEEGEAFAKEHGL-IFMETSAKT 150 (168)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999998 78999887765 6899999999999975544 778888999998888 899999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
++||
T Consensus 151 ~~~i 154 (168)
T cd01866 151 ASNV 154 (168)
T ss_pred CCCH
Confidence 9986
No 63
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1e-33 Score=183.93 Aligned_cols=152 Identities=32% Similarity=0.535 Sum_probs=137.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEE-EE-ECCeEEEEEEEeCCCCccccccccccccCCcE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (168)
-.++++++++|++-+|||+|+++|..+++.+..+||.+.+|..+ +. -++..+++++|||.|+++|+++..+++++.-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 35789999999999999999999999999999999999887443 33 36888999999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHhHHHHHchhC--CCCcE-EEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEE
Q 030961 83 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPV-VLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (168)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~-ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (168)
+++|||.+|++||+.+ +.|..+.+.+. |..++ ++||+|+|+...++ ++.++++.++...|. .|+|
T Consensus 85 vllvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq----------Vt~EEaEklAa~hgM-~FVE 152 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ----------VTAEEAEKLAASHGM-AFVE 152 (213)
T ss_pred eEEEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhcc----------ccHHHHHHHHHhcCc-eEEE
Confidence 9999999999999999 99999877765 45554 69999999998887 999999999999998 9999
Q ss_pred ecccCccCC
Q 030961 160 CSSKTQQVC 168 (168)
Q Consensus 160 ~Sa~~~~~i 168 (168)
+||++|.||
T Consensus 153 TSak~g~NV 161 (213)
T KOG0091|consen 153 TSAKNGCNV 161 (213)
T ss_pred ecccCCCcH
Confidence 999999986
No 64
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.4e-32 Score=185.86 Aligned_cols=145 Identities=27% Similarity=0.498 Sum_probs=124.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
+||+++|.+|||||||+++|+++.+...+.++....+ .....+++..+.+.+|||+|++.+..+++.+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999998777777765544 446677888999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCccC
Q 030961 88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQV 167 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (168)
|++++.++..+ ..|+..+.+..++.|+++++||+|+... . .++...++...++ +++++||++|.|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~~------------~-~~~~~~~~~~~~~-~~~~~Sa~~~~g 145 (161)
T cd04124 81 DVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDPS------------V-TQKKFNFAEKHNL-PLYYVSAADGTN 145 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCchh------------H-HHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 99999999998 8999999876678999999999998432 1 2445667777777 899999999998
Q ss_pred C
Q 030961 168 C 168 (168)
Q Consensus 168 i 168 (168)
+
T Consensus 146 v 146 (161)
T cd04124 146 V 146 (161)
T ss_pred H
Confidence 5
No 65
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.1e-32 Score=187.93 Aligned_cols=146 Identities=32% Similarity=0.576 Sum_probs=129.0
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCcccc-ccccccccCCcEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN-RLRPLSYRGADVFV 84 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~i 84 (168)
+.+||+++|++|+|||||+++|+.+.+...+.++.+.++ ...+.+++..+.+.+||++|++.++ .++..+++++|+++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 358999999999999999999999988877888887666 4567788889999999999999886 57888899999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
+|||++++.++..+ ..|+..+.... .++|+++++||+|+...+. +..+++.+++..+++ +|+++||
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa 148 (170)
T cd04115 81 FVYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQIQ----------VPTDLAQRFADAHSM-PLFETSA 148 (170)
T ss_pred EEEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhcC----------CCHHHHHHHHHHcCC-cEEEEec
Confidence 99999999999998 78998887765 5799999999999987655 778889999998887 8999999
Q ss_pred cC
Q 030961 163 KT 164 (168)
Q Consensus 163 ~~ 164 (168)
++
T Consensus 149 ~~ 150 (170)
T cd04115 149 KD 150 (170)
T ss_pred cC
Confidence 99
No 66
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=1.8e-32 Score=186.51 Aligned_cols=149 Identities=31% Similarity=0.542 Sum_probs=133.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
+||+++|.+|+|||||+++|.++.+...+.++.+..+.+.+..++..+.+.+|||||++.|..+++..++.++++++|||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~ 81 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS 81 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence 68999999999999999999999988888888887777777888888999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 89 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
++++++++.. ..|...+.+.. .+.|+++++||+|+...+. +..+++..+++.++..+++++||++|.
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~SA~~~~ 150 (168)
T cd04177 82 VTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDRQ----------VSREDGVSLSQQWGNVPFYETSARKRT 150 (168)
T ss_pred CCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHcCCceEEEeeCCCCC
Confidence 9999999998 78888887643 5799999999999976554 677788888888885589999999999
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
||
T Consensus 151 ~i 152 (168)
T cd04177 151 NV 152 (168)
T ss_pred CH
Confidence 86
No 67
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.2e-32 Score=191.06 Aligned_cols=148 Identities=34% Similarity=0.678 Sum_probs=129.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
+||+++|++|||||||+++|.++.+. ..+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999998875 356777776663 4577888899999999999999988888899999999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
||++++++++.+ ..|+..+.... .++|+++++||+|+...+. +..+++..++..++. +|+++||++|
T Consensus 81 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~Sa~~~ 148 (191)
T cd04112 81 YDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSGERV----------VKREDGERLAKEYGV-PFMETSAKTG 148 (191)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchhccc----------cCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence 999999999998 78998888776 4789999999999976544 677888999999997 9999999999
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
+||
T Consensus 149 ~~v 151 (191)
T cd04112 149 LNV 151 (191)
T ss_pred CCH
Confidence 985
No 68
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=100.00 E-value=5.1e-32 Score=185.22 Aligned_cols=160 Identities=49% Similarity=0.924 Sum_probs=135.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
.||+++|++|||||||+++|.++.+...+.++.+..+...+.+++..+.+.+|||+|++.+..++...+.++|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999999998888888887777777888888999999999999999888889999999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhc--CCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
++++++++.+...|...+.+..++.|+++++||+|+......... ......+...++++++...+..+++++||++|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE 161 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence 999999998856788888776678999999999998754321111 111234567889999998887789999999999
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
||
T Consensus 162 ~v 163 (175)
T cd01870 162 GV 163 (175)
T ss_pred CH
Confidence 85
No 69
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=1.9e-32 Score=192.92 Aligned_cols=155 Identities=28% Similarity=0.417 Sum_probs=123.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
+||+++|.+++|||||+++|..+.|.. +.+|++..+... ....+.+.+|||+|++.+..++..++++++++++|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~---~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK---QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE---EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999998864 466766554321 1246789999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchh---------hhcCCCCCcccHHHHHHHHHHhCC----
Q 030961 89 LVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHY---------LADHPGLVPVTTAQGEELRKQIGA---- 154 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~---- 154 (168)
++++++|+.+ ..|+..+.+.. ++.|++||+||+|+...... .......+.+..++++.++++.+.
T Consensus 77 vt~~~Sf~~l-~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 77 VSNVQSLEEL-EDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 9999999998 55555555443 67899999999999752110 011122456899999999998762
Q ss_pred ---------cEEEEecccCccCC
Q 030961 155 ---------SYYIECSSKTQQVC 168 (168)
Q Consensus 155 ---------~~~~~~Sa~~~~~i 168 (168)
.+|+|+||++|+||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V 178 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNV 178 (220)
T ss_pred cccccccccceEEEeeCCCCCCH
Confidence 37999999999986
No 70
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=2.7e-32 Score=191.73 Aligned_cols=152 Identities=28% Similarity=0.586 Sum_probs=134.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
..+.+||+++|++|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34679999999999999999999999988877788887776 45677888889999999999999998999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
++|||+++++++..+ ..|+..+.+.. ++.|+++++||+|+...+. +..++++++++.+++ +|+++||
T Consensus 83 vlv~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa 150 (210)
T PLN03108 83 LLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRA----------VSTEEGEQFAKEHGL-IFMEASA 150 (210)
T ss_pred EEEEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccC----------CCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 78888776654 5799999999999976654 788899999999998 8999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++++||
T Consensus 151 ~~~~~v 156 (210)
T PLN03108 151 KTAQNV 156 (210)
T ss_pred CCCCCH
Confidence 999986
No 71
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1.7e-32 Score=190.92 Aligned_cols=141 Identities=27% Similarity=0.509 Sum_probs=124.2
Q ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCCh
Q 030961 14 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR 92 (168)
Q Consensus 14 vG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 92 (168)
+|.+|||||||+++|+.+.+...+.+|++.++ .+.+.+++..+.+.+|||+|++.|..+++.++++++++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999989888889998776 45677888899999999999999999999999999999999999999
Q ss_pred hHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCccCC
Q 030961 93 ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 93 ~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
.+|..+ ..|+..+.+..+++|+++|+||+|+.... +..+. ..++...++ .|++|||++|+||
T Consensus 81 ~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~-~~~~~~~~~-~~~e~SAk~~~~v 142 (200)
T smart00176 81 VTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKDRK-----------VKAKS-ITFHRKKNL-QYYDISAKSNYNF 142 (200)
T ss_pred HHHHHH-HHHHHHHHHhCCCCCEEEEEECccccccc-----------CCHHH-HHHHHHcCC-EEEEEeCCCCCCH
Confidence 999998 78999998877789999999999986432 33333 467777887 8999999999986
No 72
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-33 Score=181.50 Aligned_cols=150 Identities=31% Similarity=0.614 Sum_probs=137.9
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
.-+||+++|+.|+|||+|++||..+-|+.-...|++.+| -+++.+++..++++||||.|+++|+++..++++.++++++
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 467999999999999999999999999888888999998 5688999999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
|||++...+|+-+ .+|+.+++++. .++--++||||+|+.+.++ +....++++++.... .|+|+||+.
T Consensus 86 vydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drre----------vp~qigeefs~~qdm-yfletsake 153 (213)
T KOG0095|consen 86 VYDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRRE----------VPQQIGEEFSEAQDM-YFLETSAKE 153 (213)
T ss_pred EEecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhh----------hhHHHHHHHHHhhhh-hhhhhcccc
Confidence 9999999999998 99999999998 4566689999999998877 888899999988665 789999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
.+||
T Consensus 154 a~nv 157 (213)
T KOG0095|consen 154 ADNV 157 (213)
T ss_pred hhhH
Confidence 8875
No 73
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.8e-32 Score=185.73 Aligned_cols=151 Identities=21% Similarity=0.301 Sum_probs=129.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
++.+||+++|.+|||||||+++|+++.+. ..+.+|.+..+. ..+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 57899999999999999999999999998 888899888775 4577788889999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
++|||++++.+++.+ ..|+..+... .+.|+++|+||+|+.+... ...+++.++++.+++..++++||+
T Consensus 82 llv~d~~~~~s~~~~-~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (169)
T cd01892 82 CLVYDSSDPKSFSYC-AEVYKKYFML-GEIPCLFVAAKADLDEQQQ----------RYEVQPDEFCRKLGLPPPLHFSSK 149 (169)
T ss_pred EEEEeCCCHHHHHHH-HHHHHHhccC-CCCeEEEEEEccccccccc----------ccccCHHHHHHHcCCCCCEEEEec
Confidence 999999999999987 7888776432 4799999999999965433 334456778888887557999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|.||
T Consensus 150 ~~~~v 154 (169)
T cd01892 150 LGDSS 154 (169)
T ss_pred cCccH
Confidence 99985
No 74
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=4.2e-32 Score=182.88 Aligned_cols=145 Identities=23% Similarity=0.331 Sum_probs=120.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
+||+++|++|+|||||+++|..+.|...+.++ ...+.+.+.+++..+.+.+||++|++. ..+++++|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 58999999999999999999998887665554 344556788899899999999999975 245678999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 89 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
++++.||+.+ ..|+..+.+.. ++.|+++|+||+|+.... .+.+..++++++++..+...|+||||++|.
T Consensus 75 ~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 145 (158)
T cd04103 75 LENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAISESN--------PRVIDDARARQLCADMKRCSYYETCATYGL 145 (158)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC--------CcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 9999999998 78998888765 578999999999985321 123788889999987753389999999999
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
||
T Consensus 146 ~i 147 (158)
T cd04103 146 NV 147 (158)
T ss_pred CH
Confidence 86
No 75
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=3.4e-32 Score=194.98 Aligned_cols=149 Identities=28% Similarity=0.424 Sum_probs=128.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
+||+++|++|+|||||+++|+++.+...+.+|+++.+.+.+.+++..+.+.+|||+|++.|..++..++.++|++++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999998888888876667778889999999999999999998888888899999999999
Q ss_pred CCChhHHHHHHHhHHHHHchh----------CCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 89 LVSRASYENVLKKWIPELQHY----------SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~----------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
++++++|+.+ ..|++.+... ..+.|+++++||+|+...+. +..+++.+++.......++
T Consensus 81 v~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~----------v~~~ei~~~~~~~~~~~~~ 149 (247)
T cd04143 81 LDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE----------VQRDEVEQLVGGDENCAYF 149 (247)
T ss_pred CCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc----------cCHHHHHHHHHhcCCCEEE
Confidence 9999999998 7888777543 24789999999999976444 6777787777644333899
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|.||
T Consensus 150 evSAktg~gI 159 (247)
T cd04143 150 EVSAKKNSNL 159 (247)
T ss_pred EEeCCCCCCH
Confidence 9999999986
No 76
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=8.6e-32 Score=186.94 Aligned_cols=152 Identities=34% Similarity=0.553 Sum_probs=130.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
+||+++|.+|+|||||+++|.++.+.. .+.++.+..+ .+.+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998864 6788887776 45678889999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 87 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
||++++.+++.+ ..|+..+....++.|+++|+||+|+..... ....+..+++..++..+++ +++++||++|+
T Consensus 81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 152 (193)
T cd04118 81 YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQDR------SLRQVDFHDVQDFADEIKA-QHFETSSKTGQ 152 (193)
T ss_pred EECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEccccccccc------ccCccCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 999999999998 789998887666899999999999864321 1123566778888888887 89999999999
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
||
T Consensus 153 gv 154 (193)
T cd04118 153 NV 154 (193)
T ss_pred CH
Confidence 86
No 77
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=2.4e-32 Score=185.26 Aligned_cols=147 Identities=30% Similarity=0.526 Sum_probs=126.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccc-cccccccccCCcEEEEEEe
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-NRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~~i~v~d 88 (168)
||+++|++|+|||||+++++...+...+.++....+.+...+++..+.+.+||+||++.+ .......++++|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 689999999999999999999888777778776666667788899999999999999853 4556678899999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhC---CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 89 LVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
++++++|+.+ ..|+..+.... .+.|+++|+||+|+...+. +..+++..+++.++. +|+++||++|
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~ 148 (165)
T cd04146 81 ITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHYRQ----------VSTEEGEKLASELGC-LFFEVSAAED 148 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc----------cCHHHHHHHHHHcCC-EEEEeCCCCC
Confidence 9999999998 78888887754 3799999999999876544 778889999999997 8999999999
Q ss_pred c-CC
Q 030961 166 Q-VC 168 (168)
Q Consensus 166 ~-~i 168 (168)
. ||
T Consensus 149 ~~~v 152 (165)
T cd04146 149 YDGV 152 (165)
T ss_pred chhH
Confidence 4 64
No 78
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.9e-33 Score=181.91 Aligned_cols=152 Identities=35% Similarity=0.647 Sum_probs=142.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
+...+|++++|..=+|||||+-||+.++|......|+...| .+++.+.+....+.||||.|+++|..+-+.++++.+++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 45789999999999999999999999999988888887777 67899999999999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
++|||++|++||+.+ +.|..++.... ..+-++|||||+|+..++. ++..++..+++.-|. .|+++||
T Consensus 90 lLVyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~----------Vt~qeAe~YAesvGA-~y~eTSA 157 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQ----------VTRQEAEAYAESVGA-LYMETSA 157 (218)
T ss_pred EEEEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhh----------hhHHHHHHHHHhhch-hheeccc
Confidence 999999999999999 99999999987 6788999999999999988 999999999999999 8999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
+.+.||
T Consensus 158 k~N~Gi 163 (218)
T KOG0088|consen 158 KDNVGI 163 (218)
T ss_pred ccccCH
Confidence 999986
No 79
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=6.8e-32 Score=182.53 Aligned_cols=148 Identities=35% Similarity=0.675 Sum_probs=131.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
+||+++|++|+|||||+++|.+..+...+.++.+.++ ...+..++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999999988877788887776 346777888889999999999999888899999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
|++++++++.+ ..|+..+.... ++.|+++++||+|+.+... +..+.++++++.+++ +++++||++|.
T Consensus 81 d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~~ 148 (164)
T smart00175 81 DITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLEDQRQ----------VSREEAEAFAEEHGL-PFFETSAKTNT 148 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcccccC----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 99999999998 67999888776 7899999999999876544 677888889998887 89999999999
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
|+
T Consensus 149 ~i 150 (164)
T smart00175 149 NV 150 (164)
T ss_pred CH
Confidence 85
No 80
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=1.6e-31 Score=184.83 Aligned_cols=160 Identities=47% Similarity=0.784 Sum_probs=134.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
.|++++|++|+|||||+++|..+.+...+.++....+...+.+++..+.+.+||++|++.+..+.+..++.+++++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999988887777777777776677788888999999999999888877788899999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCccCC
Q 030961 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
++++++++.+...|+..+.+..++.|+++|+||+|+........+....+.+..+++..+++..+..+||++||++|.||
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 161 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGV 161 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCH
Confidence 99999999985579999987777899999999999865322221222334467788999999999768999999999986
No 81
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=6.6e-32 Score=182.79 Aligned_cols=148 Identities=32% Similarity=0.561 Sum_probs=127.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCceeece-eEEEEEC-CeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNF-SANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
+||+++|++|||||||+++|... .+...+.++.+.++ .+...++ +..+++.+|||||++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 57778888887665 3445554 67799999999999999888999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
+|||+++++++..+ ..|+..+....++.|+++|+||+|+.+... +...+++.++..++. +++++||++
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (164)
T cd04101 81 LVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADKAE----------VTDAQAQAFAQANQL-KFFKTSALR 148 (164)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 99999999999987 899998887666799999999999976544 666777778888887 899999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
|.||
T Consensus 149 ~~gi 152 (164)
T cd04101 149 GVGY 152 (164)
T ss_pred CCCh
Confidence 9986
No 82
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=9.6e-32 Score=181.43 Aligned_cols=148 Identities=36% Similarity=0.610 Sum_probs=130.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
+||+++|.++||||||+++|++..+...+.++.+.++ .+.+..++..+++++||+||++.+..++..++++++++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999998887788887766 456777888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
|.++++++..+ ..|+..+.+.. .+.|+++++||+|+...+. ...++...++...++ +++++||++++
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (161)
T cd01861 81 DITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ----------VSTEEGEKKAKELNA-MFIETSAKAGH 148 (161)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEEeCCCCC
Confidence 99999999998 78888876655 4699999999999965444 677888888888887 89999999999
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
|+
T Consensus 149 ~v 150 (161)
T cd01861 149 NV 150 (161)
T ss_pred CH
Confidence 85
No 83
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=1.4e-31 Score=186.44 Aligned_cols=148 Identities=25% Similarity=0.424 Sum_probs=120.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCcccccc--------ccccccC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLSYRG 79 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~ 79 (168)
+||+++|.+|||||||+++|.++.+...+.++.+.++ ...+..++..+.+.+|||||...+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888888886554 446677888899999999997654321 2234789
Q ss_pred CcEEEEEEeCCChhHHHHHHHhHHHHHchhC----CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH-HhCC
Q 030961 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-QIGA 154 (168)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 154 (168)
+|++++|||+++++|++.+ ..|.+.+.+.. .++|+++++||+|+...+. +..+++..++. ..++
T Consensus 81 ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~----------~~~~~~~~~~~~~~~~ 149 (198)
T cd04142 81 SRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRF----------APRHVLSVLVRKSWKC 149 (198)
T ss_pred CCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECcccccccc----------ccHHHHHHHHHHhcCC
Confidence 9999999999999999998 78888776642 5799999999999976544 56666777654 4566
Q ss_pred cEEEEecccCccCC
Q 030961 155 SYYIECSSKTQQVC 168 (168)
Q Consensus 155 ~~~~~~Sa~~~~~i 168 (168)
+|+++||++|.||
T Consensus 150 -~~~e~Sak~g~~v 162 (198)
T cd04142 150 -GYLECSAKYNWHI 162 (198)
T ss_pred -cEEEecCCCCCCH
Confidence 8999999999986
No 84
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=100.00 E-value=2.5e-31 Score=180.99 Aligned_cols=160 Identities=61% Similarity=1.084 Sum_probs=135.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
+||+++|.+|+|||||+++|.+..+...+.++....+......++..+.+++||+||++.+.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999999987777888877777777888999999999999999888888888899999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhc-CCCCCcccHHHHHHHHHHhCCcEEEEecccCccC
Q 030961 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD-HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQV 167 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (168)
++++.++......|+..+.....+.|+++|+||+|+......... ......+..+++..++..++..+|+++||++|+|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG 160 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC
Confidence 999999998877888888887778999999999999866531110 0112235678889999999887899999999998
Q ss_pred C
Q 030961 168 C 168 (168)
Q Consensus 168 i 168 (168)
+
T Consensus 161 i 161 (171)
T cd00157 161 V 161 (171)
T ss_pred H
Confidence 5
No 85
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.5e-31 Score=180.82 Aligned_cols=149 Identities=35% Similarity=0.646 Sum_probs=131.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
.+||+++|++|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998777778877666 56778888899999999999999988888899999999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
+|+++++++... ..|+..+.... ++.|+++++||+|+...+. ...++...++...+. .++++||++|
T Consensus 81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (163)
T cd01860 81 YDITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLESKRQ----------VSTEEAQEYADENGL-LFFETSAKTG 148 (163)
T ss_pred EECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccCc----------CCHHHHHHHHHHcCC-EEEEEECCCC
Confidence 999999999998 78988887766 6799999999999876544 677888889998886 8999999999
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
.|+
T Consensus 149 ~~v 151 (163)
T cd01860 149 ENV 151 (163)
T ss_pred CCH
Confidence 985
No 86
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3.7e-32 Score=188.02 Aligned_cols=150 Identities=33% Similarity=0.610 Sum_probs=139.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
..+|++++|.+|+|||+|+.+|....|...|.||+++.|.+.+.+++..+.+.|+||+|++.+..+...++++++++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 87 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
|+++++.||+.+ ..+.+++.+.. ..+|+++||||+|+...+. +..++++.++..+++ +|+|+||+.
T Consensus 82 ysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~----------V~~eeg~~la~~~~~-~f~E~Sak~ 149 (196)
T KOG0395|consen 82 YSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERERQ----------VSEEEGKALARSWGC-AFIETSAKL 149 (196)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhccc----------cCHHHHHHHHHhcCC-cEEEeeccC
Confidence 999999999998 77888874433 5689999999999998877 999999999999999 699999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
..||
T Consensus 150 ~~~v 153 (196)
T KOG0395|consen 150 NYNV 153 (196)
T ss_pred CcCH
Confidence 8764
No 87
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-34 Score=186.14 Aligned_cols=151 Identities=38% Similarity=0.605 Sum_probs=138.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEE---------CCeEEEEEEEeCCCCccccccccc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVA---------EGTTVNLGLWDTAGQEDYNRLRPL 75 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~i~D~~g~~~~~~~~~~ 75 (168)
++-+|++.+|++|+|||+++.++.+++|...-..|.+.+| .+++.+ .+..+.+++|||.|+++|+++...
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 4567899999999999999999999999999999999988 455544 235688999999999999999999
Q ss_pred cccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhC
Q 030961 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (168)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (168)
++++|-+++++||+++..||.++ ..|+.+++.+. .+..+++.+||+|+.+.+. ++.+++.+++++|+
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~----------Vs~~qa~~La~kyg 155 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRV----------VSEDQAAALADKYG 155 (219)
T ss_pred HHHhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhh----------hhHHHHHHHHHHhC
Confidence 99999999999999999999999 89999998876 6788999999999999887 99999999999999
Q ss_pred CcEEEEecccCccCC
Q 030961 154 ASYYIECSSKTQQVC 168 (168)
Q Consensus 154 ~~~~~~~Sa~~~~~i 168 (168)
+ ||||+||-+|.||
T Consensus 156 l-PYfETSA~tg~Nv 169 (219)
T KOG0081|consen 156 L-PYFETSACTGTNV 169 (219)
T ss_pred C-CeeeeccccCcCH
Confidence 9 9999999999986
No 88
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=4.9e-31 Score=178.00 Aligned_cols=147 Identities=33% Similarity=0.643 Sum_probs=128.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
+||+++|++|+|||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+||+||++.+..++...++++|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777888877664 45667788899999999999999888889999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
|.+++.++..+ ..|+..+.+.. .+.|+++++||+|+.... ...++...++...++ +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (161)
T cd01863 81 DVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKENRE-----------VTREEGLKFARKHNM-LFIETSAKTR 147 (161)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCcccccc-----------cCHHHHHHHHHHcCC-EEEEEecCCC
Confidence 99999999998 67988887765 579999999999997432 566788889998887 8999999999
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
+|+
T Consensus 148 ~gi 150 (161)
T cd01863 148 DGV 150 (161)
T ss_pred CCH
Confidence 986
No 89
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=2.9e-31 Score=180.84 Aligned_cols=149 Identities=33% Similarity=0.597 Sum_probs=128.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
+||+++|++|||||||++++.+..+...+.++.+.++ .+.+.+.+..+.+.+||+||++.+..++..+++++++++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988877777877665 456778888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC-----CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 88 SLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
|++++.++... ..|...+.... .+.|+++++||+|+..++. ...++...+++..+..+++++||
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa 149 (172)
T cd01862 81 DVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ----------VSTKKAQQWCQSNGNIPYFETSA 149 (172)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCCceEEEEEC
Confidence 99999999887 67877655443 2789999999999985443 66788888888888558999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|.|+
T Consensus 150 ~~~~gv 155 (172)
T cd01862 150 KEAINV 155 (172)
T ss_pred CCCCCH
Confidence 999985
No 90
>PLN03118 Rab family protein; Provisional
Probab=99.98 E-value=5.1e-31 Score=185.51 Aligned_cols=151 Identities=31% Similarity=0.599 Sum_probs=129.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
...+||+++|.+|+|||||+++|.+..+ ..+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4678999999999999999999999877 45567777666 346677888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
+|||++++++|..+...|...+.... .+.|+++|+||+|+...+. +..+++..++..+++ .|+++||
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~SA 159 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD----------VSREEGMALAKEHGC-LFLECSA 159 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 99999999999998556777666543 4679999999999976654 677888888988887 8999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|.||
T Consensus 160 k~~~~v 165 (211)
T PLN03118 160 KTRENV 165 (211)
T ss_pred CCCCCH
Confidence 999985
No 91
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.98 E-value=7.4e-31 Score=185.70 Aligned_cols=146 Identities=25% Similarity=0.381 Sum_probs=123.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcee-eceeEEEEECCeEEEEEEEeCCCCcccccccccccc-CCcEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR-GADVFVL 85 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~i~ 85 (168)
+||+++|++|+|||||+++|..+.+. ..+.++.+ ..+.+.+.+++..+.+.+||++|++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988876 66667765 34466788888899999999999982 33444566 8999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
|||++++.+|..+ ..|+..+.+.. .+.|+++|+||+|+...+. +..++++.++...++ +|+++||+
T Consensus 79 V~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~SA~ 146 (221)
T cd04148 79 VYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARSRE----------VSVQEGRACAVVFDC-KFIETSAG 146 (221)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhccccce----------ecHHHHHHHHHHcCC-eEEEecCC
Confidence 9999999999998 78888887754 5799999999999976654 777888899988888 89999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|.||
T Consensus 147 ~~~gv 151 (221)
T cd04148 147 LQHNV 151 (221)
T ss_pred CCCCH
Confidence 99986
No 92
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.98 E-value=1e-30 Score=176.26 Aligned_cols=148 Identities=38% Similarity=0.664 Sum_probs=127.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
+||+++|.+|+|||||+++|++..+...+.++....+ ...+...+..+.+.+||+||++.+..+++.++++++++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999988766666665554 445666777889999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
|+++++++... ..|+..+.+.. .+.|+++++||+|+..... +..++..+++..++. +++++||++++
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~s~~~~~ 148 (162)
T cd04123 81 DITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQRV----------VSKSEAEEYAKSVGA-KHFETSAKTGK 148 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999998 78988888766 4789999999999985544 667778888888887 89999999999
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
|+
T Consensus 149 gi 150 (162)
T cd04123 149 GI 150 (162)
T ss_pred CH
Confidence 85
No 93
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=9.6e-32 Score=171.28 Aligned_cols=151 Identities=30% Similarity=0.600 Sum_probs=140.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
++++|.+++|+-|+|||+|+++|...+|...+..+++.+| ...+.+.++.+++++|||.|+++|+....++++++-+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 5789999999999999999999999999999999999999 557889999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
+|||++.+.+...+ ..|+....... ++..+++++||.|+...+. +..+++++++++.|+ .|+|+||+
T Consensus 89 mvyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qrd----------v~yeeak~faeengl-~fle~sak 156 (215)
T KOG0097|consen 89 MVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQRD----------VTYEEAKEFAEENGL-MFLEASAK 156 (215)
T ss_pred EEEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhccc----------CcHHHHHHHHhhcCe-EEEEeccc
Confidence 99999999999998 78888776655 7888899999999998888 999999999999999 89999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|+||
T Consensus 157 tg~nv 161 (215)
T KOG0097|consen 157 TGQNV 161 (215)
T ss_pred ccCcH
Confidence 99986
No 94
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=1.4e-30 Score=176.04 Aligned_cols=148 Identities=34% Similarity=0.604 Sum_probs=130.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
+||+++|.+|+|||||++++....+...+.++....+.+....++..+.+.+||+||++.+..++...++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999999888888888877777778888899999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 89 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
++++.++... ..|...+.+.. .+.|+++++||+|+...+. ...++...++..++. +++++||++|+
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (164)
T cd04139 81 ITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ----------VSSEEAANLARQWGV-PYVETSAKTRQ 148 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEeeCCCCC
Confidence 9999999988 67777777663 5799999999999976433 566777888888887 89999999999
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
|+
T Consensus 149 gi 150 (164)
T cd04139 149 NV 150 (164)
T ss_pred CH
Confidence 86
No 95
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=2.3e-33 Score=176.90 Aligned_cols=145 Identities=33% Similarity=0.652 Sum_probs=132.6
Q ss_pred EEECCCCCCHHHHHHHHhcCCCC-CCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeC
Q 030961 12 VTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (168)
Q Consensus 12 ~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (168)
+++|++++|||+|+-||.++.|- ..-.+|.+.+| .+-+..++..+++++|||.||++|++....+++++|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 47999999999999999887653 45567888888 56678899999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCccCC
Q 030961 90 VSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 90 ~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
.|+.||++. +.|+.++.++. ..+.+.+++||+|+.+++. +..++++++++.|++ ||+|+||++|.||
T Consensus 81 ankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~----------v~~ddg~kla~~y~i-pfmetsaktg~nv 148 (192)
T KOG0083|consen 81 ANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERA----------VKRDDGEKLAEAYGI-PFMETSAKTGFNV 148 (192)
T ss_pred ccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhc----------cccchHHHHHHHHCC-CceeccccccccH
Confidence 999999998 99999999988 6788999999999998877 889999999999999 9999999999886
No 96
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=7.1e-30 Score=173.61 Aligned_cols=151 Identities=31% Similarity=0.616 Sum_probs=128.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
.+.++|+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4569999999999999999999998877666667776555 446778888899999999999999888888999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
+|||++++.+++.+ ..|+..+.... .+.|+++++||+|+...+. +..+..+.+.+.... +++++||+
T Consensus 85 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~----------i~~~~~~~~~~~~~~-~~~~~Sa~ 152 (169)
T cd04114 85 LTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERRE----------VSQQRAEEFSDAQDM-YYLETSAK 152 (169)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEeeCC
Confidence 99999999999988 78988887765 4799999999999976544 666667778777775 89999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|.|+
T Consensus 153 ~~~gv 157 (169)
T cd04114 153 ESDNV 157 (169)
T ss_pred CCCCH
Confidence 99985
No 97
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=8.3e-31 Score=178.33 Aligned_cols=146 Identities=17% Similarity=0.222 Sum_probs=113.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
.+.+||+++|++++|||||+++|..+.+. .+.+|.+.++. . +....+.+++|||+|++.++.+++.+++++|++++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~--~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-T--VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE-E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45789999999999999999999887764 35667665543 2 22345789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHH-----hCCcEEEE
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-----IGASYYIE 159 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 159 (168)
|||++++.++......|.+.+.... .+.|++|++||+|+... +..++++.++.. ..+ ++++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~ 149 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA------------MKPHEIQEKLGLTRIRDRNW-YVQP 149 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC------------CCHHHHHHHcCCCccCCCcE-EEEE
Confidence 9999999999988444444444432 67899999999998643 345555555421 223 6899
Q ss_pred ecccCccCC
Q 030961 160 CSSKTQQVC 168 (168)
Q Consensus 160 ~Sa~~~~~i 168 (168)
+||++|+||
T Consensus 150 ~SAk~g~gv 158 (168)
T cd04149 150 SCATSGDGL 158 (168)
T ss_pred eeCCCCCCh
Confidence 999999986
No 98
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=7.2e-30 Score=171.13 Aligned_cols=148 Identities=38% Similarity=0.747 Sum_probs=130.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
+||+++|.+++|||||++++.+..+...+.++.+.++ ......++..+.+.+||+||++.+...+...++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998877778877766 456677788899999999999999888999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
|+++++++..+ ..|+..+.... .+.|+++++||+|+..... ...++.+.++...+. +++++||+++.
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa~~~~ 148 (159)
T cd00154 81 DITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLEDQRQ----------VSTEEAQQFAKENGL-LFFETSAKTGE 148 (159)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccccccc----------ccHHHHHHHHHHcCC-eEEEEecCCCC
Confidence 99999999998 77998888876 6899999999999974433 677888899988877 89999999998
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
||
T Consensus 149 ~i 150 (159)
T cd00154 149 NV 150 (159)
T ss_pred CH
Confidence 85
No 99
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=5.3e-31 Score=178.65 Aligned_cols=139 Identities=17% Similarity=0.217 Sum_probs=114.9
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeCC
Q 030961 11 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV 90 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 90 (168)
|+++|++|||||||+++|.+..+...+.+|.+..+ ..++...+++.+||++|++.++.+++.+++++|++++|||.+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t 78 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA 78 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence 79999999999999999999888777778876543 335556788999999999999999999999999999999999
Q ss_pred ChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCccc----HHHHHHHHHHhCCcEEEEecccC
Q 030961 91 SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT----TAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 91 ~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
++.++... +.|+..+.+..+++|+++++||+|+...+. +. ..++..++.+.++ +++++||++
T Consensus 79 ~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~ 144 (164)
T cd04162 79 DSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAARS----------VQEIHKELELEPIARGRRW-ILQGTSLDD 144 (164)
T ss_pred CHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCCC----------HHHHHHHhCChhhcCCCce-EEEEeeecC
Confidence 99999988 677777765447899999999999976542 21 1235666677777 899999998
No 100
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=8e-30 Score=173.13 Aligned_cols=151 Identities=23% Similarity=0.387 Sum_probs=117.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
+||+++|++|+|||||+++|.++.+...+.++ ...+.....+++..+++.+|||||.+.+...+...++.+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 48999999999999999999999886553333 23344445567788999999999999887777777899999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhC-CcEEEEecccCccC
Q 030961 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASYYIECSSKTQQV 167 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~ 167 (168)
++++.+++.+...|+..+....++.|+++++||+|+.+..... ...++...++..++ ...++++||++|.|
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~--------~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 151 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQA--------GLEEEMLPIMNEFREIETCVECSAKTLIN 151 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchh--------HHHHHHHHHHHHHhcccEEEEeccccccC
Confidence 9999999997557888887766789999999999997654200 11233444444443 23799999999998
Q ss_pred C
Q 030961 168 C 168 (168)
Q Consensus 168 i 168 (168)
+
T Consensus 152 v 152 (166)
T cd01893 152 V 152 (166)
T ss_pred H
Confidence 5
No 101
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=8.7e-30 Score=174.99 Aligned_cols=148 Identities=32% Similarity=0.530 Sum_probs=127.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
.||+++|.+|+|||||+++|.+..+...+.++....+......++..+.+.+||+||++++..++..++..++++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999998887777787776667777788888999999999999999899999999999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCcc
Q 030961 89 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
.++..+++.+ ..|...+.+.. .+.|+++++||+|+...+. +..++...+++.+++ +++++||++++
T Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (180)
T cd04137 82 VTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ----------VSTEEGKELAESWGA-AFLESSARENE 149 (180)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc----------cCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 9999999998 56656655543 4789999999999976543 566677888888887 89999999998
Q ss_pred CC
Q 030961 167 VC 168 (168)
Q Consensus 167 ~i 168 (168)
|+
T Consensus 150 gv 151 (180)
T cd04137 150 NV 151 (180)
T ss_pred CH
Confidence 85
No 102
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=9.7e-30 Score=171.15 Aligned_cols=147 Identities=35% Similarity=0.645 Sum_probs=128.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (168)
||+++|++|||||||++++++..+...+.++....+.....+++..+.+++||+||++.+..++...++.++++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999988877777877755666777788889999999999999888888899999999999999
Q ss_pred CChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCccC
Q 030961 90 VSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQV 167 (168)
Q Consensus 90 ~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (168)
++++++..+ ..|...+.+.. ...|+++++||+|+...+. +..+++..++..++. +++++||++++|
T Consensus 81 ~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 148 (160)
T cd00876 81 TDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLENERQ----------VSKEEGKALAKEWGC-PFIETSAKDNIN 148 (160)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCcccccce----------ecHHHHHHHHHHcCC-cEEEeccCCCCC
Confidence 999999998 67777776655 3799999999999987544 677889999988886 899999999998
Q ss_pred C
Q 030961 168 C 168 (168)
Q Consensus 168 i 168 (168)
|
T Consensus 149 i 149 (160)
T cd00876 149 I 149 (160)
T ss_pred H
Confidence 5
No 103
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.97 E-value=2.8e-29 Score=174.79 Aligned_cols=150 Identities=23% Similarity=0.311 Sum_probs=122.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEEC-----CeEEEEEEEeCCCCccccccccccccCCcE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAE-----GTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (168)
+||+++|++++|||||+++|.++.+...+.+|++..+. +.+.++ +..+.+++|||+|++.|..++..+++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999998888889886663 344443 567999999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHhHHHHHchh-------------------C-CCCcEEEEeeCCcccccchhhhcCCCCCcccH
Q 030961 83 FVLAFSLVSRASYENVLKKWIPELQHY-------------------S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTT 142 (168)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~l~~~-------------------~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 142 (168)
+++|||++++.|++.+ ..|+.++... . +++|++|||||+|+.+++... .....
T Consensus 81 iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~------~~~~~ 153 (202)
T cd04102 81 IILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESS------GNLVL 153 (202)
T ss_pred EEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccc------hHHHh
Confidence 9999999999999998 8999888653 1 368999999999997664300 00122
Q ss_pred HHHHHHHHHhCCcEEEEecccCcc
Q 030961 143 AQGEELRKQIGASYYIECSSKTQQ 166 (168)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (168)
.....++++.++ +.++.++....
T Consensus 154 ~~~~~ia~~~~~-~~i~~~c~~~~ 176 (202)
T cd04102 154 TARGFVAEQGNA-EEINLNCTNGR 176 (202)
T ss_pred hHhhhHHHhcCC-ceEEEecCCcc
Confidence 345677888998 78888887653
No 104
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=9.9e-30 Score=171.59 Aligned_cols=143 Identities=17% Similarity=0.260 Sum_probs=107.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
+||+++|.++||||||++++..+.+. .+.||.+..+. .+.. ..+.+.+||+||++.+..++..+++++|++++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 48999999999999999999887775 46677765542 2223 45788899999999999999999999999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHH-HHHHH----HHhCCcEEEEecc
Q 030961 89 LVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ-GEELR----KQIGASYYIECSS 162 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~Sa 162 (168)
++++.++..+.+.|...+.... .+.|++|++||+|+.+. ...++ ...+. ...++ .++++||
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~~Sa 143 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA------------MSAAEVTDKLGLHSLRNRNW-YIQATCA 143 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCccccCCCCE-EEEEeeC
Confidence 9999999998443444443322 56899999999999643 12222 22221 12233 6789999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|+||
T Consensus 144 k~g~gv 149 (159)
T cd04150 144 TSGDGL 149 (159)
T ss_pred CCCCCH
Confidence 999986
No 105
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=6.7e-29 Score=175.19 Aligned_cols=152 Identities=28% Similarity=0.496 Sum_probs=129.3
Q ss_pred CCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCc
Q 030961 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (168)
Q Consensus 3 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (168)
+.....+|++++|++|||||||+++++.+.+...+.+|.+.++. ..+..++..+.+.+||++|++.+..++..++.+++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 44567899999999999999999999988888888888887773 45667888899999999999999888888999999
Q ss_pred EEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 82 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
++++|||++++.++..+ ..|+..+.+...+.|+++++||+|+.... +.. +...+++..++ .|+++|
T Consensus 84 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-----------~~~-~~~~~~~~~~~-~~~e~S 149 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKDRQ-----------VKA-RQITFHRKKNL-QYYDIS 149 (215)
T ss_pred EEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCcccc-----------CCH-HHHHHHHHcCC-EEEEEe
Confidence 99999999999999998 78998888776789999999999986432 222 33456777777 899999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|++|.|+
T Consensus 150 a~~~~~v 156 (215)
T PTZ00132 150 AKSNYNF 156 (215)
T ss_pred CCCCCCH
Confidence 9999885
No 106
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1e-29 Score=174.87 Aligned_cols=144 Identities=17% Similarity=0.271 Sum_probs=110.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
...+||+++|.++||||||++++..+.+. .+.||.+..+. . ++...+.+++||+||++.++.+|..+++++|++++
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 34689999999999999999999987775 45677765543 2 33345788999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCc-------EE
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS-------YY 157 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 157 (168)
|||+++++++..+...+...+.+.. ++.|++|++||+|+... ...++ +....++. .+
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~------------~~~~~---~~~~l~l~~~~~~~~~~ 155 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------MNAAE---ITDKLGLHSLRQRHWYI 155 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC------------CCHHH---HHHHhCccccCCCceEE
Confidence 9999999999988444444444332 57999999999999654 22333 23233321 46
Q ss_pred EEecccCccCC
Q 030961 158 IECSSKTQQVC 168 (168)
Q Consensus 158 ~~~Sa~~~~~i 168 (168)
+++||++|+||
T Consensus 156 ~~~Sa~~g~gv 166 (181)
T PLN00223 156 QSTCATSGEGL 166 (181)
T ss_pred EeccCCCCCCH
Confidence 68999999996
No 107
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=6.3e-29 Score=173.28 Aligned_cols=147 Identities=25% Similarity=0.418 Sum_probs=121.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (168)
||+++|.+|+|||||+++|+++.+...+.++........+.+.+..+.+.+||++|++.+..++..++..+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999998877777776555556677888889999999999999988888899999999999999
Q ss_pred CChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCccccc-chhhhcCCCCCcccHHHHHHHHH-HhCCcEEEEecccCc
Q 030961 90 VSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLRED-KHYLADHPGLVPVTTAQGEELRK-QIGASYYIECSSKTQ 165 (168)
Q Consensus 90 ~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~ 165 (168)
+++.+++.+ ..|+..+.... .+.|+++++||+|+... +. +..++..+... ..+. +++++||++|
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~----------v~~~~~~~~~~~~~~~-~~~~~Sa~~g 148 (198)
T cd04147 81 DDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLEEERQ----------VPAKDALSTVELDWNC-GFVETSAKDN 148 (198)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEcccccccccc----------ccHHHHHHHHHhhcCC-cEEEecCCCC
Confidence 999999998 78887777654 47999999999998653 22 44444444443 4454 7999999999
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
.||
T Consensus 149 ~gv 151 (198)
T cd04147 149 ENV 151 (198)
T ss_pred CCH
Confidence 986
No 108
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=2.2e-29 Score=172.40 Aligned_cols=145 Identities=17% Similarity=0.246 Sum_probs=109.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
...+||+++|.+|||||||+++|..+.+. .+.+|.+..+. .... ..+.+.+||+||++.+..++..++++++++++
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 34799999999999999999999877774 45677765543 2222 45788999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHH-chhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHH-----HHhCCcEEE
Q 030961 86 AFSLVSRASYENVLKKWIPEL-QHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYYI 158 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l-~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 158 (168)
|||++++.+++.. .+|+..+ .+.. ++.|++|++||+|+.... ..++..... ....+ .++
T Consensus 87 v~D~t~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~ 152 (175)
T smart00177 87 VVDSNDRDRIDEA-REELHRMLNEDELRDAVILVFANKQDLPDAM------------KAAEITEKLGLHSIRDRNW-YIQ 152 (175)
T ss_pred EEECCCHHHHHHH-HHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------------CHHHHHHHhCccccCCCcE-EEE
Confidence 9999999999998 4555444 4332 578999999999996531 222222211 11222 577
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|+||
T Consensus 153 ~~Sa~~g~gv 162 (175)
T smart00177 153 PTCATSGDGL 162 (175)
T ss_pred EeeCCCCCCH
Confidence 8999999986
No 109
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=2.7e-29 Score=171.05 Aligned_cols=142 Identities=19% Similarity=0.284 Sum_probs=112.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (168)
||+++|.++||||||+++|.+..+.. +.+|.+..+. . ++...+.+.+||+||++.+..++..+++++|++++|+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~--~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-T--VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-E--EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 68999999999999999999987643 5677655443 2 333457888999999999999999999999999999999
Q ss_pred CChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhC-----CcEEEEecc
Q 030961 90 VSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-----ASYYIECSS 162 (168)
Q Consensus 90 ~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa 162 (168)
+++.++..+ ..|+..+.+.. .+.|++|++||+|+... +..+++++++...+ ...++++||
T Consensus 77 s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 143 (169)
T cd04158 77 SHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAGA------------LSVEEMTELLSLHKLCCGRSWYIQGCDA 143 (169)
T ss_pred CcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCcccC------------CCHHHHHHHhCCccccCCCcEEEEeCcC
Confidence 999999998 66666665432 46899999999999643 45666666654322 126889999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|.||
T Consensus 144 ~~g~gv 149 (169)
T cd04158 144 RSGMGL 149 (169)
T ss_pred CCCCCH
Confidence 999986
No 110
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=8.8e-29 Score=170.56 Aligned_cols=148 Identities=23% Similarity=0.303 Sum_probs=114.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEE-CCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
+.+||+++|++|||||||++++....+... .+|.+..+ ...+.. ++..+.+.+|||+|++.+..++..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 368999999999999999999998877543 56665444 333433 446789999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHH--hC---CcEE
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ--IG---ASYY 157 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~ 157 (168)
+|+|++++.++..+ ..|+..+.+.. .+.|+++++||+|+... ...++...+... .. ..++
T Consensus 81 ~v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 147 (183)
T cd04152 81 FVVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPNA------------LSVSEVEKLLALHELSASTPWHV 147 (183)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCcccc------------CCHHHHHHHhCccccCCCCceEE
Confidence 99999999999887 67777666543 57999999999998643 333444444321 11 1268
Q ss_pred EEecccCccCC
Q 030961 158 IECSSKTQQVC 168 (168)
Q Consensus 158 ~~~Sa~~~~~i 168 (168)
+++||++|+||
T Consensus 148 ~~~SA~~~~gi 158 (183)
T cd04152 148 QPACAIIGEGL 158 (183)
T ss_pred EEeecccCCCH
Confidence 89999999985
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=9.9e-29 Score=168.81 Aligned_cols=146 Identities=18% Similarity=0.258 Sum_probs=111.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
+...+||+++|++|+|||||+++|.+..+ ..+.+|.+... ..+.++ .+.+.+||+||++.++.++..+++++|+++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~-~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI-KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 34678999999999999999999998755 34456655332 233344 477889999999998888899999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchh-C-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH-----HhCCcEE
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-----QIGASYY 157 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~-~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 157 (168)
+|||++++.++... ..|+..+... . .+.|+++++||+|+... ...++.+.+.. ..++ ++
T Consensus 87 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~-~~ 152 (173)
T cd04154 87 WVVDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPGA------------LSEEEIREALELDKISSHHW-RI 152 (173)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcccccC------------CCHHHHHHHhCccccCCCce-EE
Confidence 99999999999887 5566555332 2 67999999999999654 23344444442 2344 89
Q ss_pred EEecccCccCC
Q 030961 158 IECSSKTQQVC 168 (168)
Q Consensus 158 ~~~Sa~~~~~i 168 (168)
+++||++|+||
T Consensus 153 ~~~Sa~~g~gi 163 (173)
T cd04154 153 QPCSAVTGEGL 163 (173)
T ss_pred EeccCCCCcCH
Confidence 99999999985
No 112
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=7.7e-29 Score=170.66 Aligned_cols=146 Identities=21% Similarity=0.285 Sum_probs=108.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
+..+||+++|+++||||||++++..+.+.. +.+|.+..+. . ++...+.+.+||++|++.++.++..+++++|++++
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~--~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-T--VEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-E--EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 346899999999999999999998877754 5677765543 2 23355788999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHH-----HHHhCCcEEEE
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL-----RKQIGASYYIE 159 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 159 (168)
|+|++++.++......+...+.... .+.|++|++||.|+... ...++.... +....+ .+++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~~-~~~~ 157 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA------------MSTTEVTEKLGLHSVRQRNW-YIQG 157 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC------------CCHHHHHHHhCCCcccCCcE-EEEe
Confidence 9999999999988444444443322 57899999999998653 122222111 111222 5779
Q ss_pred ecccCccCC
Q 030961 160 CSSKTQQVC 168 (168)
Q Consensus 160 ~Sa~~~~~i 168 (168)
+||++|+||
T Consensus 158 ~Sa~tg~gv 166 (182)
T PTZ00133 158 CCATTAQGL 166 (182)
T ss_pred eeCCCCCCH
Confidence 999999986
No 113
>PLN00023 GTP-binding protein; Provisional
Probab=99.96 E-value=6.4e-28 Score=176.01 Aligned_cols=147 Identities=19% Similarity=0.306 Sum_probs=121.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEEC-------------CeEEEEEEEeCCCCcccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAE-------------GTTVNLGLWDTAGQEDYN 70 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~i~D~~g~~~~~ 70 (168)
+...+||+++|+.|||||||+++|.++.+...+.+|++..+ .+.+.++ +..+.++||||+|++.|+
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 34679999999999999999999999999888889998776 3445553 356889999999999999
Q ss_pred ccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhC-------------CCCcEEEEeeCCcccccchhhhcCCCC
Q 030961 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-------------PGVPVVLVGTKLDLREDKHYLADHPGL 137 (168)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-------------~~~p~ivv~nK~D~~~~~~~~~~~~~~ 137 (168)
.++..++++++++|+|||++++.+++.+ ..|+..+.+.. .++|++||+||+|+...+.. ...
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~----r~~ 172 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGT----RGS 172 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccc----ccc
Confidence 9999999999999999999999999998 89999998753 24899999999999653210 000
Q ss_pred CcccHHHHHHHHHHhCCcE
Q 030961 138 VPVTTAQGEELRKQIGASY 156 (168)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~ 156 (168)
..+..++++++|.+.++.+
T Consensus 173 s~~~~e~a~~~A~~~g~l~ 191 (334)
T PLN00023 173 SGNLVDAARQWVEKQGLLP 191 (334)
T ss_pred ccccHHHHHHHHHHcCCCc
Confidence 0136789999999988743
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=7.4e-28 Score=162.50 Aligned_cols=142 Identities=20% Similarity=0.225 Sum_probs=106.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
+|+++|+++||||||+++|.+.. +...+.+|.+..... .....+.+.+|||||++.+..++..++++++++++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~---~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES---FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE---EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 58999999999999999999875 345566776644321 22345778899999999999999999999999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhC----CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHH---HH--HhCCcEEEE
Q 030961 89 LVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL---RK--QIGASYYIE 159 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~ 159 (168)
++++.++... ..|+..+.+.. .+.|+++++||+|+.... ..++.... .. ...+ ++++
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~------------~~~~~~~~l~~~~~~~~~~-~~~~ 143 (162)
T cd04157 78 SSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDAL------------TAVKITQLLGLENIKDKPW-HIFA 143 (162)
T ss_pred CCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCCC------------CHHHHHHHhCCccccCceE-EEEE
Confidence 9999999887 56666654421 479999999999996542 12222211 11 1122 5899
Q ss_pred ecccCccCC
Q 030961 160 CSSKTQQVC 168 (168)
Q Consensus 160 ~Sa~~~~~i 168 (168)
+||++|.||
T Consensus 144 ~Sa~~g~gv 152 (162)
T cd04157 144 SNALTGEGL 152 (162)
T ss_pred eeCCCCCch
Confidence 999999986
No 115
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=1.4e-27 Score=163.29 Aligned_cols=145 Identities=21% Similarity=0.295 Sum_probs=109.0
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
..+||+++|++|+|||||++++..+.+.. +.++.+..+. ....+ ..++.+||+||++.+...+..+++++|++++|
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999999887764 4666665542 22333 57788899999999988999999999999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHH-HHHHH----HHhCCcEEEEe
Q 030961 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ-GEELR----KQIGASYYIEC 160 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~ 160 (168)
+|+++++++......+...+.... .+.|+++++||+|+... ...++ .+.+. ...++ +++++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~~-~~~~~ 156 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA------------MTPAEISESLGLTSIRDHTW-HIQGC 156 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCce-EEEec
Confidence 999999999887444444443332 57999999999998653 22222 22221 22344 78999
Q ss_pred cccCccCC
Q 030961 161 SSKTQQVC 168 (168)
Q Consensus 161 Sa~~~~~i 168 (168)
||++|+||
T Consensus 157 SA~~g~gi 164 (174)
T cd04153 157 CALTGEGL 164 (174)
T ss_pred ccCCCCCH
Confidence 99999986
No 116
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=3.7e-27 Score=158.86 Aligned_cols=142 Identities=24% Similarity=0.314 Sum_probs=106.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (168)
+|+++|++|+|||||+++|.+..+.. +.+|.+..+. .+.. +..+.+.+||+||++.+..++..+++++|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 58999999999999999999988753 3566554332 2222 3457899999999999988888899999999999999
Q ss_pred CChhHHHHHHHhHHHHHchh-C-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHH------HHHHHhCCcEEEEec
Q 030961 90 VSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE------ELRKQIGASYYIECS 161 (168)
Q Consensus 90 ~~~~s~~~~~~~~~~~l~~~-~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~S 161 (168)
+++.++... ..|+..+.+. . .+.|+++++||+|+... ...++.. .++...++ +++++|
T Consensus 78 ~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~-~~~~~S 143 (160)
T cd04156 78 SDEARLDES-QKELKHILKNEHIKGVPVVLLANKQDLPGA------------LTAEEITRRFKLKKYCSDRDW-YVQPCS 143 (160)
T ss_pred CcHHHHHHH-HHHHHHHHhchhhcCCCEEEEEECcccccC------------cCHHHHHHHcCCcccCCCCcE-EEEecc
Confidence 999999888 5555554332 2 57999999999998643 1122222 22222333 789999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|++|+||
T Consensus 144 a~~~~gv 150 (160)
T cd04156 144 AVTGEGL 150 (160)
T ss_pred cccCCCh
Confidence 9999986
No 117
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=6.8e-28 Score=163.85 Aligned_cols=145 Identities=19% Similarity=0.235 Sum_probs=108.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (168)
+|+++|.++||||||+++|.+. +...+.+|.+... ..+.. ..+.+++||+||++.++.++..++++++++++|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP-TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE-EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999976 6667777776542 23333 457788999999999999999999999999999999
Q ss_pred CChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCC-cEEEEecccCc
Q 030961 90 VSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-SYYIECSSKTQ 165 (168)
Q Consensus 90 ~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 165 (168)
+++.++..+ ..|+..+.+.. .+.|+++|+||+|+........ .+....+..++.+.+. ..++++||++|
T Consensus 77 s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~------i~~~~~l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 77 SDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNALLGAD------VIEYLSLEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred CchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHH------HHHhcCcccccCCCCceEEEEEeEceeC
Confidence 999999988 67777665543 5789999999999976532000 0111112334433332 26777999998
No 118
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=3.2e-27 Score=159.04 Aligned_cols=142 Identities=17% Similarity=0.207 Sum_probs=104.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (168)
||+++|++++|||||++++..+.+. .+.++.+.++. . ++...+.+++|||||++.+..++..+++.++++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~-~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE-T--VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE-E--EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 6899999999999999999887764 34566554432 2 233457889999999999999999999999999999999
Q ss_pred CChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHH-HHH----HHhCCcEEEEeccc
Q 030961 90 VSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-ELR----KQIGASYYIECSSK 163 (168)
Q Consensus 90 ~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~ 163 (168)
+++.++......|...++... .+.|+++++||+|+.+.. ...+.. .+. ...+. +++++||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~~Sa~ 143 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL------------SEAEISEKLGLSELKDRTW-SIFKTSAI 143 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC------------CHHHHHHHhCccccCCCcE-EEEEeecc
Confidence 999888776444444444332 579999999999986542 112221 111 11223 69999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|.||
T Consensus 144 ~~~gi 148 (158)
T cd04151 144 KGEGL 148 (158)
T ss_pred CCCCH
Confidence 99986
No 119
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=1e-26 Score=160.99 Aligned_cols=146 Identities=18% Similarity=0.275 Sum_probs=112.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
.+.+||+++|++|||||||++++.+..+. .+.++.+... ..+.+++ ..+.+||+||++.+..++..++++++++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~-~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS-EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45789999999999999999999988763 4555554332 2344443 677889999999988888889999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHh-----------
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----------- 152 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 152 (168)
|+|+++..++... ..++..+.+.. .+.|+++++||+|+... +..++.+.....+
T Consensus 93 V~D~~~~~s~~~~-~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 159 (190)
T cd00879 93 LVDAADPERFQES-KEELDSLLSDEELANVPFLILGNKIDLPGA------------VSEEELRQALGLYGTTTGKGVSLK 159 (190)
T ss_pred EEECCcHHHHHHH-HHHHHHHHcCccccCCCEEEEEeCCCCCCC------------cCHHHHHHHhCccccccccccccc
Confidence 9999999999887 55555554432 56999999999998653 4556666655421
Q ss_pred ----CCcEEEEecccCccCC
Q 030961 153 ----GASYYIECSSKTQQVC 168 (168)
Q Consensus 153 ----~~~~~~~~Sa~~~~~i 168 (168)
...++++|||++|+||
T Consensus 160 ~~~~~~~~~~~~Sa~~~~gv 179 (190)
T cd00879 160 VSGIRPIEVFMCSVVKRQGY 179 (190)
T ss_pred ccCceeEEEEEeEecCCCCh
Confidence 1236899999999986
No 120
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=1e-26 Score=157.74 Aligned_cols=143 Identities=20% Similarity=0.306 Sum_probs=105.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC------CCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKF------PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
+|+++|++|+|||||+++|.+... ...+.++.+..+. .+.++ ...+.+|||||++.+..++..+++.++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG-TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 589999999999999999986432 1233444444432 23333 56788899999999998889999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHh------CCc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI------GAS 155 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 155 (168)
++|+|+++++++... ..|+..+.+.. .+.|+++++||+|+... ...++...+.... ...
T Consensus 78 v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 144 (167)
T cd04160 78 IYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDA------------LSVEEIKEVFQDKAEEIGRRDC 144 (167)
T ss_pred EEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccC------------CCHHHHHHHhccccccccCCce
Confidence 999999999988887 56666555432 57999999999998654 3334444443221 123
Q ss_pred EEEEecccCccCC
Q 030961 156 YYIECSSKTQQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~~~~i 168 (168)
+++++||++|+|+
T Consensus 145 ~~~~~Sa~~g~gv 157 (167)
T cd04160 145 LVLPVSALEGTGV 157 (167)
T ss_pred EEEEeeCCCCcCH
Confidence 7999999999986
No 121
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.94 E-value=2.4e-26 Score=154.69 Aligned_cols=141 Identities=22% Similarity=0.280 Sum_probs=106.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (168)
||+++|.+|||||||++++.+..+ ..+.++.+.... .+.+. .+.+.+||+||++.+...+..+++.++++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999998874 344555544332 22333 46788899999999988999999999999999999
Q ss_pred CChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH-----HhCCcEEEEecc
Q 030961 90 VSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-----QIGASYYIECSS 162 (168)
Q Consensus 90 ~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa 162 (168)
++++++... ..|+..+.+.. .+.|+++++||+|+.... ..++...... ... .+++++||
T Consensus 77 ~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~Sa 142 (158)
T cd00878 77 SDRERIEEA-KEELHKLLNEEELKGVPLLIFANKQDLPGAL------------SVSELIEKLGLEKILGRR-WHIQPCSA 142 (158)
T ss_pred CCHHHHHHH-HHHHHHHHhCcccCCCcEEEEeeccCCcccc------------CHHHHHHhhChhhccCCc-EEEEEeeC
Confidence 999999988 55655554432 589999999999997643 1222222222 233 37999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|.|+
T Consensus 143 ~~~~gv 148 (158)
T cd00878 143 VTGDGL 148 (158)
T ss_pred CCCCCH
Confidence 999985
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=2.4e-26 Score=158.55 Aligned_cols=146 Identities=15% Similarity=0.216 Sum_probs=108.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
.+.++|+++|.+|||||||++++.++.+.. +.+|.+... ..+.+. .+++.+||+||++.++.++..++.+++++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS-EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 567999999999999999999999887643 344443322 122333 4678889999999998899999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchh-C-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH-----------Hh
Q 030961 86 AFSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-----------QI 152 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~-~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 152 (168)
|+|++++.++... ..++..+.+. . .+.|+++++||+|+... +..++..+... ..
T Consensus 91 vvD~~~~~~~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~------------~~~~~i~~~l~l~~~~~~~~~~~~ 157 (184)
T smart00178 91 LVDAYDKERFAES-KRELDALLSDEELATVPFLILGNKIDAPYA------------ASEDELRYALGLTNTTGSKGKVGV 157 (184)
T ss_pred EEECCcHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccCC------------CCHHHHHHHcCCCcccccccccCC
Confidence 9999999999887 4555544432 2 57899999999998643 33444433321 11
Q ss_pred CCcEEEEecccCccCC
Q 030961 153 GASYYIECSSKTQQVC 168 (168)
Q Consensus 153 ~~~~~~~~Sa~~~~~i 168 (168)
+...++++||++|+|+
T Consensus 158 ~~~~i~~~Sa~~~~g~ 173 (184)
T smart00178 158 RPLEVFMCSVVRRMGY 173 (184)
T ss_pred ceeEEEEeecccCCCh
Confidence 2346899999999985
No 123
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=1.6e-26 Score=158.11 Aligned_cols=147 Identities=20% Similarity=0.307 Sum_probs=112.6
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
..+.++|+++|++||||||+++++..+.... ..||.+... ..+... .+.+.+||.+|+..++.+|+.++.++++++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~-~~i~~~--~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI-EEIKYK--GYSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE-EEEEET--TEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc-ceeeeC--cEEEEEEeccccccccccceeeccccceeE
Confidence 4678999999999999999999998765432 445554332 233344 456778999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH------HhCCcEE
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK------QIGASYY 157 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 157 (168)
||+|.++.+.+.+..+.+...+.+.. .+.|++|++||.|+... ...++...... ... ..+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~------------~~~~~i~~~l~l~~l~~~~~-~~v 153 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA------------MSEEEIKEYLGLEKLKNKRP-WSV 153 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS------------STHHHHHHHTTGGGTTSSSC-EEE
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc------------chhhHHHhhhhhhhcccCCc-eEE
Confidence 99999999999988556655555543 68999999999998765 34444444332 123 368
Q ss_pred EEecccCccCC
Q 030961 158 IECSSKTQQVC 168 (168)
Q Consensus 158 ~~~Sa~~~~~i 168 (168)
+.+||.+|+|+
T Consensus 154 ~~~sa~~g~Gv 164 (175)
T PF00025_consen 154 FSCSAKTGEGV 164 (175)
T ss_dssp EEEBTTTTBTH
T ss_pred EeeeccCCcCH
Confidence 89999999985
No 124
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.94 E-value=3.2e-28 Score=160.77 Aligned_cols=151 Identities=34% Similarity=0.517 Sum_probs=139.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
+..+|++++|..++||||+++|++.+-|...+..+++.++. ..+.+++..+.+.+||++|+++|..+...++++|.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 46899999999999999999999999999999999999884 46778888888889999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
+||+.+|+.||+.. ..|...++....++|.++|-||+|+.++.. +..++.+.+++.+.+ .++.+|++.
T Consensus 98 LVFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds~----------~~~~evE~lak~l~~-RlyRtSvke 165 (246)
T KOG4252|consen 98 LVFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDSQ----------MDKGEVEGLAKKLHK-RLYRTSVKE 165 (246)
T ss_pred EEEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhhh----------cchHHHHHHHHHhhh-hhhhhhhhh
Confidence 99999999999998 899999999888999999999999999887 899999999999998 889999998
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
..||
T Consensus 166 d~NV 169 (246)
T KOG4252|consen 166 DFNV 169 (246)
T ss_pred hhhh
Confidence 8765
No 125
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=3.1e-25 Score=148.64 Aligned_cols=141 Identities=26% Similarity=0.351 Sum_probs=107.6
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeCC
Q 030961 11 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV 90 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 90 (168)
|+++|++|||||||++++.+..+...+.++.+..+.. +... .+.+.+||+||++.++.++..+++.+|++++|+|++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 7899999999999999999998888888877665532 2222 378899999999999999999999999999999999
Q ss_pred ChhHHHHHHHhHHHHHch-hC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHH-HHH----HHHhCCcEEEEeccc
Q 030961 91 SRASYENVLKKWIPELQH-YS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG-EEL----RKQIGASYYIECSSK 163 (168)
Q Consensus 91 ~~~s~~~~~~~~~~~l~~-~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~Sa~ 163 (168)
++.++... ..++..+.. .. .+.|+++++||+|+.+... .++. ..+ ....+ .+++++||+
T Consensus 79 ~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 144 (159)
T cd04159 79 DRTALEAA-KNELHDLLEKPSLEGIPLLVLGNKNDLPGALS------------VDELIEQMNLKSITDRE-VSCYSISCK 144 (159)
T ss_pred CHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccCCcC------------HHHHHHHhCcccccCCc-eEEEEEEec
Confidence 99998887 444444433 22 5789999999999865422 1111 111 11123 378999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|.||
T Consensus 145 ~~~gi 149 (159)
T cd04159 145 EKTNI 149 (159)
T ss_pred cCCCh
Confidence 99986
No 126
>PTZ00099 rab6; Provisional
Probab=99.94 E-value=2.5e-25 Score=152.17 Aligned_cols=126 Identities=30% Similarity=0.518 Sum_probs=110.6
Q ss_pred CCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchh
Q 030961 31 NKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY 109 (168)
Q Consensus 31 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~ 109 (168)
+.|.+.+.+|++.++ .+.+.+++..+++.+|||+|++.+..+++.+++++|++++|||++++.+|+.+ ..|+..+.+.
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence 356778889998777 55678899999999999999999999999999999999999999999999998 7898887665
Q ss_pred C-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCccCC
Q 030961 110 S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 110 ~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
. ++.|++||+||+|+...+. +..+++..++..+++ .|+++||++|+||
T Consensus 82 ~~~~~piilVgNK~DL~~~~~----------v~~~e~~~~~~~~~~-~~~e~SAk~g~nV 130 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDLRK----------VTYEEGMQKAQEYNT-MFHETSAKAGHNI 130 (176)
T ss_pred cCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEECCCCCCH
Confidence 4 5789999999999975543 778889999999988 8999999999986
No 127
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.93 E-value=3e-25 Score=144.52 Aligned_cols=152 Identities=18% Similarity=0.225 Sum_probs=116.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
++++++|.++|..||||||++++|.+.. .....||.+.+.+ ++....+++++||.+|+..+++.|+.++...|++|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ik---tl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIK---TLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeE---EEEecceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 5679999999999999999999999876 3444566554432 34455688899999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
+|+|.+|+..+++....+...+.... ...|++|++||.|+...-... .....-+.+.++....+ +.+.|||.
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~------~i~~~~~L~~l~ks~~~-~l~~cs~~ 161 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLE------EISKALDLEELAKSHHW-RLVKCSAV 161 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHH------HHHHhhCHHHhccccCc-eEEEEecc
Confidence 99999999999887666666665544 578999999999998441100 00111224455566666 88999999
Q ss_pred CccC
Q 030961 164 TQQV 167 (168)
Q Consensus 164 ~~~~ 167 (168)
+|++
T Consensus 162 tge~ 165 (185)
T KOG0073|consen 162 TGED 165 (185)
T ss_pred cccc
Confidence 9976
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=6.5e-25 Score=150.53 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=102.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC-------CCCCCCCce------eecee-EEE--EE---CCeEEEEEEEeCCCCcccc
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNK-------FPTDYIPTV------FDNFS-ANV--VA---EGTTVNLGLWDTAGQEDYN 70 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~-------~~~~~~~~~------~~~~~-~~~--~~---~~~~~~~~i~D~~g~~~~~ 70 (168)
+|+++|++++|||||+++|++.. +...+.++. +..+. +.. .. ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 111222221 12221 111 22 5677889999999999999
Q ss_pred ccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH
Q 030961 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 150 (168)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (168)
.++..+++.+|++++|+|++++.++... ..|..... .++|+++++||+|+.... ..+...++++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~------------~~~~~~~~~~ 145 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALE---NNLEIIPVINKIDLPSAD------------PERVKQQIED 145 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHH---cCCCEEEEEECCCCCcCC------------HHHHHHHHHH
Confidence 8888899999999999999987776654 44543332 468999999999986432 1233445566
Q ss_pred HhCCc--EEEEecccCccCC
Q 030961 151 QIGAS--YYIECSSKTQQVC 168 (168)
Q Consensus 151 ~~~~~--~~~~~Sa~~~~~i 168 (168)
.+++. .++++||++|+||
T Consensus 146 ~~~~~~~~~~~~Sa~~g~gi 165 (179)
T cd01890 146 VLGLDPSEAILVSAKTGLGV 165 (179)
T ss_pred HhCCCcccEEEeeccCCCCH
Confidence 66652 4899999999986
No 129
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=2.7e-24 Score=143.67 Aligned_cols=149 Identities=36% Similarity=0.520 Sum_probs=115.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeE-EEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
.+||+++|.+|+|||||++++.+..+...+.++.+..+.. .+..++..+.+.+||+||+..+..++....+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3799999999999999999999988766777777666643 456777778999999999999988888888999999999
Q ss_pred EeCCCh-hHHHHHHHhHHHHHchhCC-CCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 87 FSLVSR-ASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 87 ~d~~~~-~s~~~~~~~~~~~l~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
+|.... .++......|...+.+... +.|+++++||+|+.... ........+.. .+..+++++||++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~-~~~~~~~~~sa~~ 148 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-----------LKTHVAFLFAK-LNGEPIIPLSAET 148 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-----------hhHHHHHHHhh-ccCCceEEeecCC
Confidence 998877 6666653466666666554 78999999999997643 22233333333 4444799999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
|.|+
T Consensus 149 ~~gv 152 (161)
T TIGR00231 149 GKNI 152 (161)
T ss_pred CCCH
Confidence 9985
No 130
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=1.5e-24 Score=153.32 Aligned_cols=160 Identities=32% Similarity=0.500 Sum_probs=124.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeE-EEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
.+||+++|++|||||||+++|.++.+...+.++.+..+.. .....+..+.+.+|||+|+++++.+++.++.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999999999998889998877744 445555588999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCC--CcccHHHHHHHHHH---hCCcEEEEe
Q 030961 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGL--VPVTTAQGEELRKQ---IGASYYIEC 160 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~ 160 (168)
||..+..++....+.|...+.... .+.|+++++||+|+............. .....+.....+.. ... .++++
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 163 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANP-ALLET 163 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccc-ceeEe
Confidence 999997777777799999999987 479999999999999775311110000 01222222332222 243 48999
Q ss_pred ccc--CccCC
Q 030961 161 SSK--TQQVC 168 (168)
Q Consensus 161 Sa~--~~~~i 168 (168)
|++ .+.||
T Consensus 164 s~~~~~~~~v 173 (219)
T COG1100 164 SAKSLTGPNV 173 (219)
T ss_pred ecccCCCcCH
Confidence 999 76654
No 131
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=1.6e-25 Score=148.19 Aligned_cols=127 Identities=27% Similarity=0.279 Sum_probs=93.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCc-----cccccccccccCCcEEE
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE-----DYNRLRPLSYRGADVFV 84 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~~~~i 84 (168)
||+++|++|+|||||+++|.+..+. +.+|.+..+. . .+|||||+. .+..+.+ .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~~------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEYN------D-----GAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEEc------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999987652 2333332221 1 579999973 2333333 478999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
+|||++++.++.. ..|...+ ..|+++++||+|+.+.. ...++++++++..+..+++++||++
T Consensus 68 lv~d~~~~~s~~~--~~~~~~~-----~~p~ilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~Sa~~ 129 (142)
T TIGR02528 68 LVQSATDPESRFP--PGFASIF-----VKPVIGLVTKIDLAEAD-----------VDIERAKELLETAGAEPIFEISSVD 129 (142)
T ss_pred EEecCCCCCcCCC--hhHHHhc-----cCCeEEEEEeeccCCcc-----------cCHHHHHHHHHHcCCCcEEEEecCC
Confidence 9999999998765 3454432 24999999999986432 4456777888777765799999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
|+|+
T Consensus 130 ~~gi 133 (142)
T TIGR02528 130 EQGL 133 (142)
T ss_pred CCCH
Confidence 9985
No 132
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.92 E-value=4.1e-24 Score=145.11 Aligned_cols=144 Identities=19% Similarity=0.160 Sum_probs=95.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccc---------c-cc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPL---------S-YR 78 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~---------~-~~ 78 (168)
.+|+++|.+|+|||||+++|.+..+.....+-.+..... .........+.+|||||.... ..+.. . ..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~~-~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFV-GHFDYKYLRWQVIDTPGLLDR-PLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeE-EEEccCceEEEEEECCCcCCc-cccCCchHHHHHHHHHHh
Confidence 479999999999999999999987643211111111111 112223578889999998431 11111 0 12
Q ss_pred CCcEEEEEEeCCChhHH--HHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcE
Q 030961 79 GADVFVLAFSLVSRASY--ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (168)
Q Consensus 79 ~~~~~i~v~d~~~~~s~--~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (168)
.+|++++|+|++++.++ +.. ..|+..+.....+.|+++++||+|+..... +. +.+.+....+. +
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~----------~~--~~~~~~~~~~~-~ 144 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFED----------LS--EIEEEEELEGE-E 144 (168)
T ss_pred ccCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhh----------HH--HHHHhhhhccC-c
Confidence 36899999999987653 444 567777766545899999999999975432 22 24455554555 8
Q ss_pred EEEecccCccCC
Q 030961 157 YIECSSKTQQVC 168 (168)
Q Consensus 157 ~~~~Sa~~~~~i 168 (168)
++++||++|.|+
T Consensus 145 ~~~~Sa~~~~gi 156 (168)
T cd01897 145 VLKISTLTEEGV 156 (168)
T ss_pred eEEEEecccCCH
Confidence 999999999986
No 133
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.92 E-value=1.6e-25 Score=143.43 Aligned_cols=144 Identities=23% Similarity=0.330 Sum_probs=119.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
..+.+.++|..++|||||+|....+.+.+...||.+.... .+....+.+.+||.||++.|+.+|+.+++.++++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 3678999999999999999999998888888888876543 3445556777899999999999999999999999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCC-------cEEE
Q 030961 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-------SYYI 158 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 158 (168)
+|+++++.+...+.++.+.+.+.. ..+|++|+|||.|+... ++. ..+..++|+ +..|
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A------------L~~---~~li~rmgL~sitdREvcC~ 160 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA------------LSK---IALIERMGLSSITDREVCCF 160 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc------------ccH---HHHHHHhCccccccceEEEE
Confidence 999999999888888888888877 78999999999999876 333 333344444 3578
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
.+|++...||
T Consensus 161 siScke~~Ni 170 (186)
T KOG0075|consen 161 SISCKEKVNI 170 (186)
T ss_pred EEEEcCCccH
Confidence 9999988875
No 134
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.92 E-value=2.8e-24 Score=146.61 Aligned_cols=144 Identities=22% Similarity=0.314 Sum_probs=104.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
...++++++|++|+|||||++++.+..+. .+.++.+... ..+..+ ...+.+||++|+..+...+...++.++++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~-~~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI-KTVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 45799999999999999999999987653 3345544332 223333 3667889999998888888888999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCC-------cEE
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-------SYY 157 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 157 (168)
|+|+++..++......+...+.... .++|+++++||+|+.... .. ..+....++ .++
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~---~~i~~~l~~~~~~~~~~~~ 152 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA------------PA---EEIAEALNLHDLRDRTWHI 152 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC------------CH---HHHHHHcCCcccCCCeEEE
Confidence 9999999988877333334333322 579999999999986542 11 122222332 147
Q ss_pred EEecccCccCC
Q 030961 158 IECSSKTQQVC 168 (168)
Q Consensus 158 ~~~Sa~~~~~i 168 (168)
+++||++|+|+
T Consensus 153 ~~~Sa~~~~gi 163 (173)
T cd04155 153 QACSAKTGEGL 163 (173)
T ss_pred EEeECCCCCCH
Confidence 89999999986
No 135
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.92 E-value=3.4e-24 Score=145.73 Aligned_cols=145 Identities=19% Similarity=0.140 Sum_probs=97.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeE-EEEECCeEEEEEEEeCCCCcc----cccccccc---ccCCc
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQED----YNRLRPLS---YRGAD 81 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~~ 81 (168)
+|+++|.+|||||||+++|.+........+..+..... .+.+++ ...+.+|||||... ...+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 58999999999999999998765421111111111111 122222 24788899999642 22233333 34699
Q ss_pred EEEEEEeCCCh-hHHHHHHHhHHHHHchhC---CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHh-CCcE
Q 030961 82 VFVLAFSLVSR-ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-GASY 156 (168)
Q Consensus 82 ~~i~v~d~~~~-~s~~~~~~~~~~~l~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 156 (168)
++++|+|++++ .+++.. ..|.+.+.... .+.|+++|+||+|+..... ..+....+.... +. +
T Consensus 81 ~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~-~ 147 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-----------LFELLKELLKELWGK-P 147 (170)
T ss_pred EEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCchh-----------hHHHHHHHHhhCCCC-C
Confidence 99999999999 788887 78888877654 3689999999999866532 233444455543 44 7
Q ss_pred EEEecccCccCC
Q 030961 157 YIECSSKTQQVC 168 (168)
Q Consensus 157 ~~~~Sa~~~~~i 168 (168)
++++||+++.||
T Consensus 148 ~~~~Sa~~~~gi 159 (170)
T cd01898 148 VFPISALTGEGL 159 (170)
T ss_pred EEEEecCCCCCH
Confidence 999999999885
No 136
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.7e-24 Score=142.55 Aligned_cols=147 Identities=18% Similarity=0.237 Sum_probs=117.6
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
..++.+|+++|..++||||++.+|..+..... .||++..... +.+. .+.+.+||.+|++.++.+|+.++++.+++|
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~-v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET-VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE-EEEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 56789999999999999999999988776544 7888766532 2222 677888999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHH-----HHhCCcEEE
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYYI 158 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 158 (168)
||+|.+|++.+.++.+++...+.... .+.|+++++||.|+... .+..+..+.. ....+ ++.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a------------ls~~ei~~~L~l~~l~~~~w-~iq 156 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA------------LSAAEITNKLGLHSLRSRNW-HIQ 156 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc------------CCHHHHHhHhhhhccCCCCc-EEe
Confidence 99999999999999888888877765 58999999999999876 3333332222 22344 566
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
.++|.+|+|+
T Consensus 157 ~~~a~~G~GL 166 (181)
T KOG0070|consen 157 STCAISGEGL 166 (181)
T ss_pred eccccccccH
Confidence 6999999984
No 137
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.92 E-value=5.3e-24 Score=136.87 Aligned_cols=114 Identities=29% Similarity=0.537 Sum_probs=87.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
||+|+|++|||||||+++|++..+. ..+.++.+..+. ...........+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998765 122222233332 3455667777799999999998888777789999999999
Q ss_pred EeCCChhHHHHHHH--hHHHHHchhCCCCcEEEEeeCCc
Q 030961 87 FSLVSRASYENVLK--KWIPELQHYSPGVPVVLVGTKLD 123 (168)
Q Consensus 87 ~d~~~~~s~~~~~~--~~~~~l~~~~~~~p~ivv~nK~D 123 (168)
||++++.++..+.+ .|+..+.....++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999998722 25666665556799999999998
No 138
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.91 E-value=4.8e-24 Score=149.28 Aligned_cols=145 Identities=18% Similarity=0.097 Sum_probs=98.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccc--cc------ccc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR--LR------PLS 76 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~--~~------~~~ 76 (168)
++.++|+++|++|||||||++++.+..+.....+..+... ...+..++. ..+.+|||||...... +. ...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999998764322222222122 223333332 3688899999732111 00 112
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCc
Q 030961 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (168)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (168)
+..+|++++|+|++++.++... ..|...+.... .+.|+++|+||+|+..... .. ......+.
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~----------~~-----~~~~~~~~- 180 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEE----------LE-----ERLEAGRP- 180 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHH----------HH-----HHhhcCCC-
Confidence 5689999999999998888775 66766666554 5789999999999965532 11 33344444
Q ss_pred EEEEecccCccCC
Q 030961 156 YYIECSSKTQQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~~~~i 168 (168)
+++++||++|.|+
T Consensus 181 ~~~~~Sa~~~~gi 193 (204)
T cd01878 181 DAVFISAKTGEGL 193 (204)
T ss_pred ceEEEEcCCCCCH
Confidence 7999999999985
No 139
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.91 E-value=8.5e-24 Score=142.75 Aligned_cols=143 Identities=20% Similarity=0.166 Sum_probs=92.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC---CCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNK---FPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
.|+++|.+|+|||||+++|.+.. +.....++.+.... ......+ ...+.+|||||++.+.......++++|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 58999999999999999998642 22222222222221 2233332 4578889999999887666667889999999
Q ss_pred EEeCCCh---hHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHH---hCCcEEEE
Q 030961 86 AFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ---IGASYYIE 159 (168)
Q Consensus 86 v~d~~~~---~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 159 (168)
|+|+++. .+.+.+ ..+... ...|+++++||+|+..... .....++..+.... .+. ++++
T Consensus 81 V~d~~~~~~~~~~~~~-----~~~~~~-~~~~~ilv~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~ 145 (164)
T cd04171 81 VVAADEGIMPQTREHL-----EILELL-GIKRGLVVLTKADLVDEDW--------LELVEEEIRELLAGTFLADA-PIFP 145 (164)
T ss_pred EEECCCCccHhHHHHH-----HHHHHh-CCCcEEEEEECccccCHHH--------HHHHHHHHHHHHHhcCcCCC-cEEE
Confidence 9999873 333322 222221 2249999999999965421 00122344444443 244 8999
Q ss_pred ecccCccCC
Q 030961 160 CSSKTQQVC 168 (168)
Q Consensus 160 ~Sa~~~~~i 168 (168)
+||++|+|+
T Consensus 146 ~Sa~~~~~v 154 (164)
T cd04171 146 VSAVTGEGI 154 (164)
T ss_pred EeCCCCcCH
Confidence 999999985
No 140
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=8.4e-24 Score=147.00 Aligned_cols=147 Identities=12% Similarity=0.082 Sum_probs=102.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc--CCCCCCC------------CCceeece-eEEEEECCeEEEEEEEeCCCCcccccc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS--NKFPTDY------------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL 72 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 72 (168)
.-+|+++|.+++|||||+++|++ +.+...+ ..+.+..+ .+...+....+.+.+|||||++.|..+
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 34799999999999999999997 4444332 11122222 233445556778899999999999999
Q ss_pred ccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHH-
Q 030961 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ- 151 (168)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 151 (168)
+..+++.+|++++|+|+++.. +... ..++..+.. .++|+++++||+|+...+. ....++...+...
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~-~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~---------~~~~~~~~~~~~~~ 148 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQT-RFVLKKALE--LGLKPIVVINKIDRPDARP---------EEVVDEVFDLFIEL 148 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHH-HHHHHHHHH--cCCCEEEEEECCCCCCCCH---------HHHHHHHHHHHHHh
Confidence 999999999999999998743 2222 344444433 4689999999999964321 0223444444422
Q ss_pred ------hCCcEEEEecccCccCC
Q 030961 152 ------IGASYYIECSSKTQQVC 168 (168)
Q Consensus 152 ------~~~~~~~~~Sa~~~~~i 168 (168)
.+. +++++||++|.|+
T Consensus 149 ~~~~~~~~~-~iv~~Sa~~g~~~ 170 (194)
T cd01891 149 GATEEQLDF-PVLYASAKNGWAS 170 (194)
T ss_pred CCccccCcc-CEEEeehhccccc
Confidence 255 7999999999885
No 141
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=1.3e-23 Score=156.20 Aligned_cols=147 Identities=17% Similarity=0.128 Sum_probs=102.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeE-EEEECCeEEEEEEEeCCCCccc----ccccc---ccccCC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDY----NRLRP---LSYRGA 80 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~----~~~~~---~~~~~~ 80 (168)
..|.+||.|+||||||++++.+.+......+-.+..... .+.+. ...++.+||+||..+- ..+.. .+++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 468999999999999999999865432222211222221 22232 3345778999996431 12222 245679
Q ss_pred cEEEEEEeCCChhHHHHHHHhHHHHHchhC---CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEE
Q 030961 81 DVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 157 (168)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (168)
+++++|+|+++.++++.. +.|..++..+. .+.|+++|+||+|+..... +..+..+.++...+. ++
T Consensus 238 ~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~----------~~~~~~~~~~~~~~~-~i 305 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEEE----------EREKRAALELAALGG-PV 305 (335)
T ss_pred CEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCchh----------HHHHHHHHHHHhcCC-CE
Confidence 999999999988888887 88988888765 3689999999999975533 333445555555665 89
Q ss_pred EEecccCccCC
Q 030961 158 IECSSKTQQVC 168 (168)
Q Consensus 158 ~~~Sa~~~~~i 168 (168)
+++||++++||
T Consensus 306 ~~iSAktg~GI 316 (335)
T PRK12299 306 FLISAVTGEGL 316 (335)
T ss_pred EEEEcCCCCCH
Confidence 99999999985
No 142
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.90 E-value=1.2e-23 Score=136.10 Aligned_cols=155 Identities=26% Similarity=0.487 Sum_probs=129.9
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
-.+||.++|++..|||||+-+++++.+.+.+..+.+..+ .+++.+.+..+.+.+||.+|++++..+.+..++++.+++|
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 478999999999999999999999998888888888888 6788999999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
+||+++++++..+ .+|+++....+...--++||+|.|+.-.-. ++.......+++.++...++ +.|++|+-.+
T Consensus 99 mFDLt~r~TLnSi-~~WY~QAr~~NktAiPilvGTKyD~fi~lp-----~e~Q~~I~~qar~YAk~mnA-sL~F~Sts~s 171 (205)
T KOG1673|consen 99 MFDLTRRSTLNSI-KEWYRQARGLNKTAIPILVGTKYDLFIDLP-----PELQETISRQARKYAKVMNA-SLFFCSTSHS 171 (205)
T ss_pred EEecCchHHHHHH-HHHHHHHhccCCccceEEeccchHhhhcCC-----HHHHHHHHHHHHHHHHHhCC-cEEEeecccc
Confidence 9999999999998 899999888774444466799999753211 00111344567888889998 8889998776
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
-||
T Consensus 172 INv 174 (205)
T KOG1673|consen 172 INV 174 (205)
T ss_pred ccH
Confidence 654
No 143
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.90 E-value=4.6e-23 Score=150.02 Aligned_cols=142 Identities=18% Similarity=0.136 Sum_probs=95.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeceeEEEEECCeEEEEEEEeCCCCcccc-cc-------ccccccCC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN-RL-------RPLSYRGA 80 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~-------~~~~~~~~ 80 (168)
+|+++|.||+|||||+|+|.+.++.. ...+..+......+...+ ..++.+|||||..... .+ ....+.++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999987542 112222222222222222 3568889999975431 11 23456899
Q ss_pred cEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEe
Q 030961 81 DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 160 (168)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (168)
|++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.... ...+....++...+..+++++
T Consensus 81 Dvvl~VvD~~~~~~~~---~~i~~~l~~--~~~p~ilV~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~v~~i 144 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG---EFVLTKLQN--LKRPVVLTRNKLDNKFKD-----------KLLPLIDKYAILEDFKDIVPI 144 (270)
T ss_pred CEEEEEEECCCCCchH---HHHHHHHHh--cCCCEEEEEECeeCCCHH-----------HHHHHHHHHHhhcCCCceEEE
Confidence 9999999998876654 344455544 468999999999996432 223445555555555578999
Q ss_pred cccCccCC
Q 030961 161 SSKTQQVC 168 (168)
Q Consensus 161 Sa~~~~~i 168 (168)
||++|.|+
T Consensus 145 SA~~g~gi 152 (270)
T TIGR00436 145 SALTGDNT 152 (270)
T ss_pred ecCCCCCH
Confidence 99999986
No 144
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.90 E-value=6.8e-23 Score=138.99 Aligned_cols=146 Identities=18% Similarity=0.164 Sum_probs=97.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEEC-CeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
.|+++|.+|+|||||+++|....+.....++.+.... ..+..+ +....+.+|||||++.+..++...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 5899999999999999999988776554444433332 222222 24577889999999998888888889999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHH----h-CCcEEEEecc
Q 030961 88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ----I-GASYYIECSS 162 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~Sa 162 (168)
|+++...... ...+..+.. .+.|+++++||+|+...... ...+....+... . ...+++++||
T Consensus 82 d~~~~~~~~~--~~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T cd01887 82 AADDGVMPQT--IEAIKLAKA--ANVPFIVALNKIDKPNANPE---------RVKNELSELGLQGEDEWGGDVQIVPTSA 148 (168)
T ss_pred ECCCCccHHH--HHHHHHHHH--cCCCEEEEEEceecccccHH---------HHHHHHHHhhccccccccCcCcEEEeec
Confidence 9987532221 112223333 46899999999998743210 011111111111 1 1237899999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|+||
T Consensus 149 ~~~~gi 154 (168)
T cd01887 149 KTGEGI 154 (168)
T ss_pred ccCCCH
Confidence 999985
No 145
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.90 E-value=2.1e-22 Score=133.27 Aligned_cols=144 Identities=40% Similarity=0.744 Sum_probs=107.8
Q ss_pred EECCCCCCHHHHHHHHhcCCC-CCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCC
Q 030961 13 TVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS 91 (168)
Q Consensus 13 vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 91 (168)
++|++|+|||||++++.+... .....++....+............+.+||+||...+...+...++.++++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998876 4555555533335566666778899999999998887777788899999999999999
Q ss_pred hhHHHHHHHhH--HHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHH-HHHHHHHhCCcEEEEecccCccCC
Q 030961 92 RASYENVLKKW--IPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ-GEELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 92 ~~s~~~~~~~~--~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
+.++... ..| ...........|+++++||+|+..... ..... ......... .+++++|+..+.|+
T Consensus 81 ~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i 148 (157)
T cd00882 81 RESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEERV----------VSEEELAEQLAKELG-VPYFETSAKTGENV 148 (157)
T ss_pred HHHHHHH-HHHHHHHHHhhccCCCcEEEEEeccccccccc----------hHHHHHHHHHHhhcC-CcEEEEecCCCCCh
Confidence 9998887 555 222222336899999999999976643 22221 333444444 48999999999875
No 146
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.90 E-value=1.1e-22 Score=139.72 Aligned_cols=151 Identities=17% Similarity=0.084 Sum_probs=99.0
Q ss_pred CCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEE-EEECCeEEEEEEEeCCCCcc----------ccc
Q 030961 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQED----------YNR 71 (168)
Q Consensus 3 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~~~----------~~~ 71 (168)
+++...++|+++|.+|+|||||++++.+..+...+.++.+.+.... ...++ .+.+|||||... +..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence 3457789999999999999999999998764444444443333222 22232 588899999532 222
Q ss_pred ccccccc---CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHH
Q 030961 72 LRPLSYR---GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 148 (168)
Q Consensus 72 ~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (168)
+...+++ .++++++|+|++++.+.... .+...+.. .+.|+++++||+|+..+... ....+++++.
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~--~~~pviiv~nK~D~~~~~~~--------~~~~~~i~~~ 157 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE--RGIPVLIVLTKADKLKKSEL--------NKQLKKIKKA 157 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCCHHHH--------HHHHHHHHHH
Confidence 2233333 46799999999876555443 33444443 36899999999999754320 0234445555
Q ss_pred HHHhCC-cEEEEecccCccCC
Q 030961 149 RKQIGA-SYYIECSSKTQQVC 168 (168)
Q Consensus 149 ~~~~~~-~~~~~~Sa~~~~~i 168 (168)
....+. ..+|++||++|+||
T Consensus 158 l~~~~~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 158 LKKDADDPSVQLFSSLKKTGI 178 (179)
T ss_pred HhhccCCCceEEEECCCCCCC
Confidence 555432 27999999999996
No 147
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.89 E-value=2.3e-22 Score=135.05 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=96.2
Q ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCcccccc------ccccc--cCCcEE
Q 030961 13 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL------RPLSY--RGADVF 83 (168)
Q Consensus 13 vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~ 83 (168)
++|.+|+|||||++++.+..+.....+..+... ...+.+++ ..+.+|||||++.+... +..++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998764443334333333 33455554 46788999999876543 34444 489999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
++|+|+.++.... .+...+.+ .++|+++++||+|+..... +. .+...++..++. +++++||.
T Consensus 79 i~v~d~~~~~~~~----~~~~~~~~--~~~~~iiv~NK~Dl~~~~~----------~~-~~~~~~~~~~~~-~~~~iSa~ 140 (158)
T cd01879 79 VNVVDATNLERNL----YLTLQLLE--LGLPVVVALNMIDEAEKRG----------IK-IDLDKLSELLGV-PVVPTSAR 140 (158)
T ss_pred EEEeeCCcchhHH----HHHHHHHH--cCCCEEEEEehhhhccccc----------ch-hhHHHHHHhhCC-CeEEEEcc
Confidence 9999998865432 33334433 3689999999999975532 22 334567777787 89999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|.|+
T Consensus 141 ~~~~~ 145 (158)
T cd01879 141 KGEGI 145 (158)
T ss_pred CCCCH
Confidence 99885
No 148
>PRK15494 era GTPase Era; Provisional
Probab=99.89 E-value=2.4e-22 Score=150.22 Aligned_cols=144 Identities=15% Similarity=0.200 Sum_probs=94.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC-CCC-ceeeceeEEEEECCeEEEEEEEeCCCCcc-cccccc-------c
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTD-YIP-TVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRP-------L 75 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~-------~ 75 (168)
.+..+|+++|.+|||||||+|+|++.++... ..+ +........+..++ .++.+|||||... +..+.. .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 4567999999999999999999999876421 111 11111223344444 4678899999843 222221 2
Q ss_pred cccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhC-C
Q 030961 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-A 154 (168)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 154 (168)
.+.++|++++|+|..+ ++......|+..+... +.|.++|+||+|+... ...++.+++.... .
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-------------~~~~~~~~l~~~~~~ 190 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK-------------YLNDIKAFLTENHPD 190 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-------------cHHHHHHHHHhcCCC
Confidence 3678999999999765 3444434566666542 4677889999998532 1344555555443 2
Q ss_pred cEEEEecccCccCC
Q 030961 155 SYYIECSSKTQQVC 168 (168)
Q Consensus 155 ~~~~~~Sa~~~~~i 168 (168)
..+|++||++|.|+
T Consensus 191 ~~i~~iSAktg~gv 204 (339)
T PRK15494 191 SLLFPISALSGKNI 204 (339)
T ss_pred cEEEEEeccCccCH
Confidence 47999999999985
No 149
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.89 E-value=3.1e-22 Score=148.69 Aligned_cols=147 Identities=18% Similarity=0.148 Sum_probs=100.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCcccc----cccccc---ccC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYN----RLRPLS---YRG 79 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~----~~~~~~---~~~ 79 (168)
...|+++|.|+||||||++++.+.+......+..+.... ..+.+++ ..++.+||+||..... .+...+ +..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 346899999999999999999987532221111111111 1223332 3667889999974321 233333 457
Q ss_pred CcEEEEEEeCCCh---hHHHHHHHhHHHHHchhC---CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhC
Q 030961 80 ADVFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (168)
Q Consensus 80 ~~~~i~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (168)
++++++|+|+++. ++++.. ..|.+++..+. .+.|++||+||+|+.... ...+..+.+++.++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-----------~~~~~~~~l~~~~~ 303 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDEE-----------ELAELLKELKKALG 303 (329)
T ss_pred hCEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCChH-----------HHHHHHHHHHHHcC
Confidence 9999999999876 567666 77877776654 478999999999996543 22344566666677
Q ss_pred CcEEEEecccCccCC
Q 030961 154 ASYYIECSSKTQQVC 168 (168)
Q Consensus 154 ~~~~~~~Sa~~~~~i 168 (168)
. +++++||++++||
T Consensus 304 ~-~vi~iSAktg~GI 317 (329)
T TIGR02729 304 K-PVFPISALTGEGL 317 (329)
T ss_pred C-cEEEEEccCCcCH
Confidence 6 8999999999985
No 150
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.88 E-value=2.8e-22 Score=150.16 Aligned_cols=142 Identities=18% Similarity=0.124 Sum_probs=96.3
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeec-eeEEEEECCeEEEEEEEeCCCCcc---------cccccccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVVAEGTTVNLGLWDTAGQED---------YNRLRPLS 76 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~ 76 (168)
..++|+++|.+|+|||||+|+|.+........+..+.+ ....+.+++ ...+.+|||+|..+ |...+ ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 45899999999999999999999876432222211222 234455532 24678899999722 21111 23
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCc
Q 030961 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (168)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (168)
+.++|++++|+|++++.+.+.. ..|...+.... .+.|+++|+||+|+..... + ..... ...
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~----------v-----~~~~~-~~~- 327 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPR----------I-----ERLEE-GYP- 327 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHh----------H-----HHHHh-CCC-
Confidence 6789999999999998887765 55666665544 4789999999999964321 1 11111 122
Q ss_pred EEEEecccCccCC
Q 030961 156 YYIECSSKTQQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~~~~i 168 (168)
+++++||++|.||
T Consensus 328 ~~i~iSAktg~GI 340 (351)
T TIGR03156 328 EAVFVSAKTGEGL 340 (351)
T ss_pred CEEEEEccCCCCH
Confidence 6899999999985
No 151
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.88 E-value=3.1e-22 Score=133.00 Aligned_cols=140 Identities=21% Similarity=0.222 Sum_probs=96.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccc------cccc--cC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLR------PLSY--RG 79 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~~--~~ 79 (168)
++|+++|.||+|||||+|+|.+.+......|..+.+.. ..+...+ ..+.++|+||...+.... ..++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 58999999999999999999998865555555555543 3455566 556669999976554332 2222 47
Q ss_pred CcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEE
Q 030961 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (168)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (168)
.|++++|+|+++.+ .. -++..++.+ -++|++++.||+|+..... +. .+...+.+.+++ ++++
T Consensus 79 ~D~ii~VvDa~~l~---r~-l~l~~ql~e--~g~P~vvvlN~~D~a~~~g----------~~-id~~~Ls~~Lg~-pvi~ 140 (156)
T PF02421_consen 79 PDLIIVVVDATNLE---RN-LYLTLQLLE--LGIPVVVVLNKMDEAERKG----------IE-IDAEKLSERLGV-PVIP 140 (156)
T ss_dssp SSEEEEEEEGGGHH---HH-HHHHHHHHH--TTSSEEEEEETHHHHHHTT----------EE-E-HHHHHHHHTS--EEE
T ss_pred CCEEEEECCCCCHH---HH-HHHHHHHHH--cCCCEEEEEeCHHHHHHcC----------CE-ECHHHHHHHhCC-CEEE
Confidence 99999999998744 32 234444444 3699999999999987654 22 246778888998 9999
Q ss_pred ecccCccCC
Q 030961 160 CSSKTQQVC 168 (168)
Q Consensus 160 ~Sa~~~~~i 168 (168)
+||++++|+
T Consensus 141 ~sa~~~~g~ 149 (156)
T PF02421_consen 141 VSARTGEGI 149 (156)
T ss_dssp EBTTTTBTH
T ss_pred EEeCCCcCH
Confidence 999999984
No 152
>PRK04213 GTP-binding protein; Provisional
Probab=99.88 E-value=1.5e-22 Score=141.38 Aligned_cols=143 Identities=20% Similarity=0.141 Sum_probs=92.0
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCC-----------Cccccccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG-----------QEDYNRLR 73 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~ 73 (168)
+...++|+++|.+|+|||||+++|.+..+.....+..+.. ....... .+.+||||| ++.++.++
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 3467899999999999999999999887655444543322 1222222 578899999 34555544
Q ss_pred ccccc----CCcEEEEEEeCCChhHHH---------HHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcc
Q 030961 74 PLSYR----GADVFVLAFSLVSRASYE---------NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 140 (168)
Q Consensus 74 ~~~~~----~~~~~i~v~d~~~~~s~~---------~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 140 (168)
..++. .++++++|+|..+...+. .....+...+.. .++|+++|+||+|+....
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~------------ 146 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR------------ 146 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH------------
Confidence 44443 467888888875432220 000122333332 479999999999986432
Q ss_pred cHHHHHHHHHHhCC--------cEEEEecccCccCC
Q 030961 141 TTAQGEELRKQIGA--------SYYIECSSKTQQVC 168 (168)
Q Consensus 141 ~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i 168 (168)
.+...+++..++. .+++++||++| ||
T Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi 180 (201)
T PRK04213 147 -DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GI 180 (201)
T ss_pred -HHHHHHHHHHhcCCccccccCCcEEEEecccC-CH
Confidence 2344555555554 14799999999 85
No 153
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=5.9e-22 Score=154.13 Aligned_cols=141 Identities=18% Similarity=0.209 Sum_probs=95.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeece-eEEEEECCeEEEEEEEeCCCCcc--------cccccccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED--------YNRLRPLS 76 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 76 (168)
..++|+++|.+|||||||+|+|++.... ....+..+.+. .......+. .+.+|||||.+. +...+..+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 4579999999999999999999987642 22223222222 333444444 467899999763 22234456
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcE
Q 030961 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (168)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (168)
++.+|++++|+|++++.++.. ..+...+.. .+.|+++|+||+|+.... .+....+. .+...
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~--~~i~~~l~~--~~~piilV~NK~Dl~~~~-------------~~~~~~~~--~g~~~ 175 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD--EAVARVLRR--SGKPVILAANKVDDERGE-------------ADAAALWS--LGLGE 175 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCCccc-------------hhhHHHHh--cCCCC
Confidence 789999999999998876653 456666654 479999999999985421 11222222 34334
Q ss_pred EEEecccCccCC
Q 030961 157 YIECSSKTQQVC 168 (168)
Q Consensus 157 ~~~~Sa~~~~~i 168 (168)
.+++||++|.||
T Consensus 176 ~~~iSA~~g~gi 187 (472)
T PRK03003 176 PHPVSALHGRGV 187 (472)
T ss_pred eEEEEcCCCCCc
Confidence 579999999986
No 154
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=1.3e-21 Score=131.15 Aligned_cols=136 Identities=21% Similarity=0.170 Sum_probs=91.4
Q ss_pred EEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccc--------cccccccCCc
Q 030961 12 VTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR--------LRPLSYRGAD 81 (168)
Q Consensus 12 ~vvG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~~ 81 (168)
+++|.+|+|||||++++++... .....++...........++ ..+.+|||||...+.. .+...++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 4799999999999999998752 22222222222223333433 5678899999887544 2334577899
Q ss_pred EEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 82 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
++++|+|..++.+... ..+...+.+ .+.|+++++||+|+..... . .......+..+++++|
T Consensus 79 ~ii~v~d~~~~~~~~~--~~~~~~~~~--~~~piiiv~nK~D~~~~~~----------~-----~~~~~~~~~~~~~~~S 139 (157)
T cd01894 79 VILFVVDGREGLTPAD--EEIAKYLRK--SKKPVILVVNKVDNIKEED----------E-----AAEFYSLGFGEPIPIS 139 (157)
T ss_pred EEEEEEeccccCCccH--HHHHHHHHh--cCCCEEEEEECcccCChHH----------H-----HHHHHhcCCCCeEEEe
Confidence 9999999987655443 234444444 3589999999999976532 1 2223345554789999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|++|.|+
T Consensus 140 a~~~~gv 146 (157)
T cd01894 140 AEHGRGI 146 (157)
T ss_pred cccCCCH
Confidence 9999985
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=9.9e-22 Score=152.90 Aligned_cols=148 Identities=22% Similarity=0.210 Sum_probs=98.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeceeEEEEECCeEEEEEEEeCCCCcc----------ccccc-
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----------YNRLR- 73 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~- 73 (168)
..++|+++|.+|+|||||+++|++..+. ....++..+.....+..++..+ .+|||||... +..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~--~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTW--RFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEE--EEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999988642 2222333333345556666554 6799999532 22221
Q ss_pred cccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhC
Q 030961 74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (168)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (168)
...++.+|++++|+|++++.++... .++..+.. .+.|+++|+||+|+...... .....+.........
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~--~~~piIiV~NK~Dl~~~~~~--------~~~~~~i~~~l~~~~ 355 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIE--AGRALVLAFNKWDLVDEDRR--------YYLEREIDRELAQVP 355 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChhHH--------HHHHHHHHHhcccCC
Confidence 2346789999999999999888775 35555544 47899999999999653210 011122222222223
Q ss_pred CcEEEEecccCccCC
Q 030961 154 ASYYIECSSKTQQVC 168 (168)
Q Consensus 154 ~~~~~~~Sa~~~~~i 168 (168)
..+++++||++|.||
T Consensus 356 ~~~~~~~SAk~g~gv 370 (472)
T PRK03003 356 WAPRVNISAKTGRAV 370 (472)
T ss_pred CCCEEEEECCCCCCH
Confidence 348899999999986
No 156
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.3e-21 Score=123.46 Aligned_cols=145 Identities=17% Similarity=0.241 Sum_probs=114.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
.++++|+++|..++||||++.+|.-+.. ....||.+.... .+..+.+.+.+||.+|++..+++|.+++.+.-++||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnve---tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE---TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccceeEE---EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 4689999999999999999999987643 334566654432 344456778889999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHH-----HHhCCcEEEE
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYYIE 159 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 159 (168)
|+|.++++..++++.++...+.+.- .+.|++|.+||-|+.... ...+.+.+. +...+ ...+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~------------~pqei~d~leLe~~r~~~W-~vqp 157 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM------------KPQEIQDKLELERIRDRNW-YVQP 157 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc------------CHHHHHHHhccccccCCcc-Eeec
Confidence 9999999999999888888887765 689999999999999874 334433333 33344 4577
Q ss_pred ecccCccC
Q 030961 160 CSSKTQQV 167 (168)
Q Consensus 160 ~Sa~~~~~ 167 (168)
+||.+|+|
T Consensus 158 ~~a~~gdg 165 (180)
T KOG0071|consen 158 SCALSGDG 165 (180)
T ss_pred cccccchh
Confidence 99999886
No 157
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.87 E-value=1e-20 Score=122.29 Aligned_cols=146 Identities=27% Similarity=0.350 Sum_probs=121.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeceeEEEEE-CCeEEEEEEEeCCCCccc-cccccccccCCcE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDY-NRLRPLSYRGADV 82 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~ 82 (168)
+..|++++|..++|||+++.+++.+.- ...+.+|+.+.|...+.. .+..-+++++||.|.... ..+-.+++.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 578999999999999999999886543 356778888888665544 456678999999998777 4566667888999
Q ss_pred EEEEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEe
Q 030961 83 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 160 (168)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (168)
+++||+..|++||+.+ +-+.+.+.+.. ..+|+++++||+|+.+++. +..+-++.||.+-.. ..+++
T Consensus 88 fVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~----------vd~d~A~~Wa~rEkv-kl~eV 155 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE----------VDMDVAQIWAKREKV-KLWEV 155 (198)
T ss_pred EEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccchh----------cCHHHHHHHHhhhhe-eEEEE
Confidence 9999999999999987 66666666654 4799999999999988776 899999999998887 89999
Q ss_pred cccC
Q 030961 161 SSKT 164 (168)
Q Consensus 161 Sa~~ 164 (168)
+|..
T Consensus 156 ta~d 159 (198)
T KOG3883|consen 156 TAMD 159 (198)
T ss_pred Eecc
Confidence 9875
No 158
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.87 E-value=2.9e-21 Score=130.27 Aligned_cols=147 Identities=16% Similarity=0.092 Sum_probs=97.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccc--------cccccccC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR--------LRPLSYRG 79 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~ 79 (168)
..+|+++|.+|+|||||++++.+..+........................+.+|||||...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999876532211111111222222333456788899999754322 22334678
Q ss_pred CcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEE
Q 030961 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (168)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (168)
+|++++|+|++++.+.. ...+...+.. .+.|+++++||+|+..... ...+....+....+..++++
T Consensus 83 ~d~i~~v~d~~~~~~~~--~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~ 148 (168)
T cd04163 83 VDLVLFVVDASEPIGEG--DEFILELLKK--SKTPVILVLNKIDLVKDKE----------DLLPLLEKLKELGPFAEIFP 148 (168)
T ss_pred CCEEEEEEECCCccCch--HHHHHHHHHH--hCCCEEEEEEchhccccHH----------HHHHHHHHHHhccCCCceEE
Confidence 99999999998872221 1344444544 2589999999999974332 33444555555555558999
Q ss_pred ecccCccCC
Q 030961 160 CSSKTQQVC 168 (168)
Q Consensus 160 ~Sa~~~~~i 168 (168)
+|+++++|+
T Consensus 149 ~s~~~~~~~ 157 (168)
T cd04163 149 ISALKGENV 157 (168)
T ss_pred EEeccCCCh
Confidence 999999885
No 159
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.87 E-value=4.3e-21 Score=151.66 Aligned_cols=145 Identities=18% Similarity=0.228 Sum_probs=101.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
.+..+|+++|++++|||||+++|.+..+.....+.++.... ..+..++. ..+.+|||||++.|..++...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 35689999999999999999999988776554444444432 23333332 26788999999999999988899999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHH-------hC-CcE
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-------IG-ASY 156 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~ 156 (168)
+|+|+++...-+.. + .+..+.. .++|+++++||+|+.... .++....... ++ ..+
T Consensus 164 LVVda~dgv~~qT~-e-~i~~~~~--~~vPiIVviNKiDl~~~~-------------~e~v~~~L~~~g~~~~~~~~~~~ 226 (587)
T TIGR00487 164 LVVAADDGVMPQTI-E-AISHAKA--ANVPIIVAINKIDKPEAN-------------PDRVKQELSEYGLVPEDWGGDTI 226 (587)
T ss_pred EEEECCCCCCHhHH-H-HHHHHHH--cCCCEEEEEECcccccCC-------------HHHHHHHHHHhhhhHHhcCCCce
Confidence 99998875432221 2 2222222 468999999999986432 1222222222 22 137
Q ss_pred EEEecccCccCC
Q 030961 157 YIECSSKTQQVC 168 (168)
Q Consensus 157 ~~~~Sa~~~~~i 168 (168)
++++||++|+||
T Consensus 227 ~v~iSAktGeGI 238 (587)
T TIGR00487 227 FVPVSALTGDGI 238 (587)
T ss_pred EEEEECCCCCCh
Confidence 999999999986
No 160
>COG1159 Era GTPase [General function prediction only]
Probab=99.87 E-value=1.4e-21 Score=139.65 Aligned_cols=148 Identities=16% Similarity=0.119 Sum_probs=106.8
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccc--------ccccccccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY--------NRLRPLSYR 78 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~~ 78 (168)
+.--++++|.||+|||||+|++++.+..-......+++......+.....++.++||||-..- .......+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 455789999999999999999999987544344444444444444444788899999995432 223344577
Q ss_pred CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
++|+++||+|+.++..-.. +..++.+++ .+.|++++.||+|...+.. ........+.........+
T Consensus 85 dvDlilfvvd~~~~~~~~d--~~il~~lk~--~~~pvil~iNKID~~~~~~----------~l~~~~~~~~~~~~f~~iv 150 (298)
T COG1159 85 DVDLILFVVDADEGWGPGD--EFILEQLKK--TKTPVILVVNKIDKVKPKT----------VLLKLIAFLKKLLPFKEIV 150 (298)
T ss_pred cCcEEEEEEeccccCCccH--HHHHHHHhh--cCCCeEEEEEccccCCcHH----------HHHHHHHHHHhhCCcceEE
Confidence 9999999999988766544 566666666 4689999999999987753 2233344444555556789
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|.|+
T Consensus 151 piSA~~g~n~ 160 (298)
T COG1159 151 PISALKGDNV 160 (298)
T ss_pred EeeccccCCH
Confidence 9999999985
No 161
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.87 E-value=1.7e-21 Score=132.99 Aligned_cols=143 Identities=24% Similarity=0.243 Sum_probs=92.4
Q ss_pred EECCCCCCHHHHHHHHhcCCCC-CCCCCceeeceeEEEEECCeEEEEEEEeCCCCccc----cccc---cccccCCcEEE
Q 030961 13 TVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----NRLR---PLSYRGADVFV 84 (168)
Q Consensus 13 vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~---~~~~~~~~~~i 84 (168)
++|++|||||||++++.+.... ..+..+........+.++ ....+.+|||||.... ..++ ...++.+++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 5899999999999999987642 222122111112223333 1456788999997432 2222 22367899999
Q ss_pred EEEeCCCh------hHHHHHHHhHHHHHchhC--------CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH
Q 030961 85 LAFSLVSR------ASYENVLKKWIPELQHYS--------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 150 (168)
Q Consensus 85 ~v~d~~~~------~s~~~~~~~~~~~l~~~~--------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (168)
+|+|+.++ .++... ..|...+.... .+.|+++++||+|+..... ...........
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----------~~~~~~~~~~~ 148 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE----------LEEELVRELAL 148 (176)
T ss_pred EEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH----------HHHHHHHHHhc
Confidence 99999988 466665 56666665432 3689999999999976543 22222233333
Q ss_pred HhCCcEEEEecccCccCC
Q 030961 151 QIGASYYIECSSKTQQVC 168 (168)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~i 168 (168)
..+. +++++||+++.|+
T Consensus 149 ~~~~-~~~~~Sa~~~~gl 165 (176)
T cd01881 149 EEGA-EVVPISAKTEEGL 165 (176)
T ss_pred CCCC-CEEEEehhhhcCH
Confidence 3444 7999999999885
No 162
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=4.2e-21 Score=141.27 Aligned_cols=148 Identities=18% Similarity=0.154 Sum_probs=97.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCcccc--------cccccccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN--------RLRPLSYR 78 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~ 78 (168)
+.-.|+++|.||||||||+|+|++.++........++.............++.+|||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 3556999999999999999999998764322111111221111122233788899999975432 12233467
Q ss_pred CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
++|++++|+|++++.+-.. ..+...+.. .+.|+++|+||+|+..... ...+....+....+...++
T Consensus 84 ~~D~il~vvd~~~~~~~~~--~~i~~~l~~--~~~pvilVlNKiDl~~~~~----------~l~~~~~~l~~~~~~~~i~ 149 (292)
T PRK00089 84 DVDLVLFVVDADEKIGPGD--EFILEKLKK--VKTPVILVLNKIDLVKDKE----------ELLPLLEELSELMDFAEIV 149 (292)
T ss_pred cCCEEEEEEeCCCCCChhH--HHHHHHHhh--cCCCEEEEEECCcCCCCHH----------HHHHHHHHHHhhCCCCeEE
Confidence 8999999999988433221 344444443 3689999999999974432 3345566666666656899
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||+++.|+
T Consensus 150 ~iSA~~~~gv 159 (292)
T PRK00089 150 PISALKGDNV 159 (292)
T ss_pred EecCCCCCCH
Confidence 9999999885
No 163
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=3.3e-21 Score=134.76 Aligned_cols=117 Identities=17% Similarity=0.230 Sum_probs=88.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeE-EEEECCeEEEEEEEeCCCCccccccccccccCC-cEEEEEE
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFVLAF 87 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-~~~i~v~ 87 (168)
+|+++|+++||||||+++|....+...+.++. ..... .....+....+.+||+||++.++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 68999999999999999999987755543332 22221 122224457788999999999988888888998 9999999
Q ss_pred eCCCh-hHHHHHHHhHHHHHchh---CCCCcEEEEeeCCccccc
Q 030961 88 SLVSR-ASYENVLKKWIPELQHY---SPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 88 d~~~~-~s~~~~~~~~~~~l~~~---~~~~p~ivv~nK~D~~~~ 127 (168)
|+.+. .++..+...++..+... .+.+|+++++||+|+...
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 99987 67777645554444322 258999999999998754
No 164
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.87 E-value=3.3e-21 Score=152.89 Aligned_cols=145 Identities=17% Similarity=0.131 Sum_probs=103.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-------CCCCCCCc------eeecee-EE--EEE---CCeEEEEEEEeCCCCcc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNK-------FPTDYIPT------VFDNFS-AN--VVA---EGTTVNLGLWDTAGQED 68 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~-------~~~~~~~~------~~~~~~-~~--~~~---~~~~~~~~i~D~~g~~~ 68 (168)
.-+++++|+.++|||||+++|+... +...+..+ .+.++. .. +.. ++..+.+.+|||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 5589999999999999999998642 11111111 122221 11 222 46678999999999999
Q ss_pred ccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHH
Q 030961 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 148 (168)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (168)
|...+..+++.+|++++|+|++++.+.+.. ..|...+. .+.|+++++||+|+.... ..+...++
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~~------------~~~~~~el 146 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSAD------------PERVKKEI 146 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCccC------------HHHHHHHH
Confidence 998889999999999999999998777665 45554443 368999999999986432 12233455
Q ss_pred HHHhCCc--EEEEecccCccCC
Q 030961 149 RKQIGAS--YYIECSSKTQQVC 168 (168)
Q Consensus 149 ~~~~~~~--~~~~~Sa~~~~~i 168 (168)
...++.. .++++||++|.||
T Consensus 147 ~~~lg~~~~~vi~vSAktG~GI 168 (595)
T TIGR01393 147 EEVIGLDASEAILASAKTGIGI 168 (595)
T ss_pred HHHhCCCcceEEEeeccCCCCH
Confidence 5555552 4899999999986
No 165
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.87 E-value=3.2e-21 Score=129.13 Aligned_cols=134 Identities=22% Similarity=0.242 Sum_probs=92.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeece-eEEEEECCeEEEEEEEeCCCCcccccc--------cccccc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLSYR 78 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 78 (168)
++|+++|++|+|||||++++.+..... ...+..+..+ ......+ ...+.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876421 2122222222 2233333 456788999997665322 123567
Q ss_pred CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
.+|++++|+|++++.+.... ..+.. ..+.|+++++||+|+..... . ...... .+++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~~----------~-------~~~~~~-~~~~ 135 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDSE----------L-------LSLLAG-KPII 135 (157)
T ss_pred hCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCccc----------c-------ccccCC-CceE
Confidence 89999999999988777664 33222 34789999999999976543 1 223333 3899
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||+++.|+
T Consensus 136 ~~Sa~~~~~v 145 (157)
T cd04164 136 AISAKTGEGL 145 (157)
T ss_pred EEECCCCCCH
Confidence 9999999885
No 166
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.87 E-value=5e-21 Score=147.18 Aligned_cols=134 Identities=22% Similarity=0.213 Sum_probs=96.8
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccc--------ccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS 76 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 76 (168)
..++|+++|.+|+|||||+|+|++... ...+.++..+.....+.+++. .+.+|||||...+...+ ..+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 468999999999999999999998653 344434433333555666654 45789999986654322 346
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcE
Q 030961 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (168)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (168)
++++|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+... . ...++..++. +
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~-~---------------~~~~~~~~~~-~ 337 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN-S---------------LEFFVSSKVL-N 337 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc-c---------------hhhhhhhcCC-c
Confidence 7899999999999998887652 5555543 46899999999998532 1 1234555666 7
Q ss_pred EEEecccC
Q 030961 157 YIECSSKT 164 (168)
Q Consensus 157 ~~~~Sa~~ 164 (168)
++++||++
T Consensus 338 ~~~vSak~ 345 (442)
T TIGR00450 338 SSNLSAKQ 345 (442)
T ss_pred eEEEEEec
Confidence 89999998
No 167
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=9.8e-21 Score=128.61 Aligned_cols=145 Identities=20% Similarity=0.231 Sum_probs=92.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeec-eeEEEEECCeEEEEEEEeCCCCcccccc-----------cc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDN-FSANVVAEGTTVNLGLWDTAGQEDYNRL-----------RP 74 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~ 74 (168)
.++|+++|.+|+|||||++++++..... ...+..+.. ....+..++. .+.+|||||....... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5789999999999999999999875321 111222111 2233444444 4567999997543211 11
Q ss_pred ccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHH-HHHHHHHhC
Q 030961 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ-GEELRKQIG 153 (168)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 153 (168)
..+..+|++++|+|++++.+.... .+...+.. .+.|+++++||+|+..... ...++ ...+.+..+
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~ 145 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL--RIAGLILE--EGKALVIVVNKWDLVEKDS----------KTMKEFKKEIRRKLP 145 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHh--cCCCEEEEEeccccCCccH----------HHHHHHHHHHHhhcc
Confidence 235689999999999998776553 33333333 3689999999999976531 11121 222323332
Q ss_pred ---CcEEEEecccCccCC
Q 030961 154 ---ASYYIECSSKTQQVC 168 (168)
Q Consensus 154 ---~~~~~~~Sa~~~~~i 168 (168)
..+++++||++++|+
T Consensus 146 ~~~~~~~~~~Sa~~~~~i 163 (174)
T cd01895 146 FLDYAPIVFISALTGQGV 163 (174)
T ss_pred cccCCceEEEeccCCCCH
Confidence 348999999999985
No 168
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.86 E-value=3.2e-21 Score=132.99 Aligned_cols=147 Identities=16% Similarity=0.063 Sum_probs=99.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--------------ecee-EEEEECCeEEEEEEEeCCCCcccccccc
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--------------DNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRP 74 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 74 (168)
+|+++|.+|+|||||++++++.........+.. .... ...........+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 489999999999999999998765443222111 0110 0111222346788899999988888888
Q ss_pred ccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHh--
Q 030961 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-- 152 (168)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 152 (168)
..++.+|++++|+|+.++.+... ..++..+.. .+.|+++++||+|+..+... ....++.++.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~--------~~~~~~~~~~~~~~~~ 148 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT--REHLRIARE--GGLPIIVAINKIDRVGEEDL--------EEVLREIKELLGLIGF 148 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH--HHHHHHHHH--CCCCeEEEEECCCCcchhcH--------HHHHHHHHHHHccccc
Confidence 88899999999999987665443 344444444 57999999999999763210 01223333333332
Q ss_pred -----------CCcEEEEecccCccCC
Q 030961 153 -----------GASYYIECSSKTQQVC 168 (168)
Q Consensus 153 -----------~~~~~~~~Sa~~~~~i 168 (168)
...+++++||++|.|+
T Consensus 149 ~~~~~~~~~~~~~~~v~~~Sa~~g~gi 175 (189)
T cd00881 149 ISTKEEGTRNGLLVPIVPGSALTGIGV 175 (189)
T ss_pred cchhhhhcccCCcceEEEEecccCcCH
Confidence 2348999999999985
No 169
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=1.4e-20 Score=145.27 Aligned_cols=146 Identities=23% Similarity=0.241 Sum_probs=97.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccc----------
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR---------- 73 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~---------- 73 (168)
...++++++|.+++|||||+++|++.... ....++..+.....+..++. .+.+|||||........
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 34689999999999999999999987532 22223333333344445554 56779999976554332
Q ss_pred -cccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHH-HHHH-
Q 030961 74 -PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-ELRK- 150 (168)
Q Consensus 74 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 150 (168)
...++.+|++++|+|++++.+.... .+...+.. .+.|+++|+||+|+..... ..++.. .+..
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~~~~~-----------~~~~~~~~~~~~ 312 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDL--RIAGLILE--AGKALVIVVNKWDLVKDEK-----------TREEFKKELRRK 312 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHH--cCCcEEEEEECcccCCCHH-----------HHHHHHHHHHHh
Confidence 2356789999999999988777663 44444444 4689999999999972211 112221 2222
Q ss_pred --HhCCcEEEEecccCccCC
Q 030961 151 --QIGASYYIECSSKTQQVC 168 (168)
Q Consensus 151 --~~~~~~~~~~Sa~~~~~i 168 (168)
..+..+++++||++|.||
T Consensus 313 ~~~~~~~~vi~~SA~~g~~v 332 (429)
T TIGR03594 313 LPFLDFAPIVFISALTGQGV 332 (429)
T ss_pred cccCCCCceEEEeCCCCCCH
Confidence 223348999999999985
No 170
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=1.2e-20 Score=143.82 Aligned_cols=142 Identities=21% Similarity=0.167 Sum_probs=97.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeE-EEEECCeEEEEEEEeCCCCccc----ccccccc---ccCCc
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDY----NRLRPLS---YRGAD 81 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~----~~~~~~~---~~~~~ 81 (168)
.|+++|.|+||||||++++.+.+......+-.+..... .+.++ ....+.+||+||...- ..+...+ +..++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 78999999999999999999876432211211111111 12222 1356788999996431 2233333 45699
Q ss_pred EEEEEEeCCCh---hHHHHHHHhHHHHHchhC---CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCc
Q 030961 82 VFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (168)
Q Consensus 82 ~~i~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (168)
++++|+|+++. +.++.. ..|..++..+. .+.|++||+||+|+... .+....++..++.
T Consensus 239 llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--------------~e~l~~l~~~l~~- 302 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPEA--------------EENLEEFKEKLGP- 302 (424)
T ss_pred EEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcCC--------------HHHHHHHHHHhCC-
Confidence 99999999864 566665 67777777764 36899999999998322 2445666776775
Q ss_pred EEEEecccCccCC
Q 030961 156 YYIECSSKTQQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~~~~i 168 (168)
+++++||++++|+
T Consensus 303 ~i~~iSA~tgeGI 315 (424)
T PRK12297 303 KVFPISALTGQGL 315 (424)
T ss_pred cEEEEeCCCCCCH
Confidence 8999999999985
No 171
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.86 E-value=4.6e-21 Score=148.00 Aligned_cols=135 Identities=24% Similarity=0.258 Sum_probs=95.9
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeceeEEEEECCeEEEEEEEeCCCCcccccc--------cccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLS 76 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 76 (168)
..++|+++|.+|+|||||+|+|.+... ......+..+.....+.+++ ..+.+|||||...+... ....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 458999999999999999999998764 23323333333344555655 45678999998765432 2235
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcE
Q 030961 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (168)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (168)
++++|++++|+|++++.+++.. ..|.. ..+.|+++|+||+|+..... .. ...+. +
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~----------~~--------~~~~~-~ 346 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEID----------LE--------EENGK-P 346 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccch----------hh--------hccCC-c
Confidence 7889999999999998877754 44433 34689999999999965432 11 22344 7
Q ss_pred EEEecccCccCC
Q 030961 157 YIECSSKTQQVC 168 (168)
Q Consensus 157 ~~~~Sa~~~~~i 168 (168)
++++||++|+|+
T Consensus 347 ~i~iSAktg~GI 358 (449)
T PRK05291 347 VIRISAKTGEGI 358 (449)
T ss_pred eEEEEeeCCCCH
Confidence 899999999985
No 172
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.8e-21 Score=128.97 Aligned_cols=153 Identities=29% Similarity=0.476 Sum_probs=131.5
Q ss_pred CCCCcce--eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCe-EEEEEEEeCCCCccccccccccc
Q 030961 1 MASSASR--FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQEDYNRLRPLSY 77 (168)
Q Consensus 1 m~~~~~~--~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~ 77 (168)
|.+++.. ..+++++|+.|.||||++.|...+.|...+.+|++..........+. .+.+..|||.|++.+..+...++
T Consensus 1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy 80 (216)
T KOG0096|consen 1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY 80 (216)
T ss_pred CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE
Confidence 6655544 89999999999999999999999999999999999887665544444 59999999999999999999999
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEE
Q 030961 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 157 (168)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (168)
-++...+++||+..+-++.++ ..|...+.+.+.++|+++-|||.|..... .......+-+..++ .|
T Consensus 81 I~~qcAiimFdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~------------~k~k~v~~~rkknl-~y 146 (216)
T KOG0096|consen 81 IQGQCAIIMFDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARK------------VKAKPVSFHRKKNL-QY 146 (216)
T ss_pred EecceeEEEeeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceeccccc------------cccccceeeecccc-ee
Confidence 999999999999999999998 89999999999889999999999986652 23444556666777 89
Q ss_pred EEecccCccC
Q 030961 158 IECSSKTQQV 167 (168)
Q Consensus 158 ~~~Sa~~~~~ 167 (168)
++.||+++.|
T Consensus 147 ~~iSaksn~N 156 (216)
T KOG0096|consen 147 YEISAKSNYN 156 (216)
T ss_pred EEeecccccc
Confidence 9999999876
No 173
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=8.5e-21 Score=146.66 Aligned_cols=139 Identities=21% Similarity=0.190 Sum_probs=93.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeceeEEEEECCeEEEEEEEeCCCCcc--------cccccccccc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPLSYR 78 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 78 (168)
++|+++|.+|+|||||+|+|.+... .....++..+........++ ..+.+|||||.+. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999998764 22222222222233455555 6788899999876 2222344678
Q ss_pred CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
.+|++++|+|+.++.+... ..+...+.+ .+.|+++++||+|+.... +...++ ..+++..++
T Consensus 80 ~ad~il~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~D~~~~~--------------~~~~~~-~~lg~~~~~ 140 (435)
T PRK00093 80 EADVILFVVDGRAGLTPAD--EEIAKILRK--SNKPVILVVNKVDGPDEE--------------ADAYEF-YSLGLGEPY 140 (435)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCcEEEEEECccCccch--------------hhHHHH-HhcCCCCCE
Confidence 9999999999988644432 223333333 268999999999964321 122222 345664589
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|.|+
T Consensus 141 ~iSa~~g~gv 150 (435)
T PRK00093 141 PISAEHGRGI 150 (435)
T ss_pred EEEeeCCCCH
Confidence 9999999985
No 174
>PRK11058 GTPase HflX; Provisional
Probab=99.85 E-value=9.6e-21 Score=144.94 Aligned_cols=144 Identities=17% Similarity=0.097 Sum_probs=93.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccc--cccccc------ccc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY--NRLRPL------SYR 78 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~~------~~~ 78 (168)
.++|+++|.+|+|||||+|+|.+..+.....+..+.+. ...+...+. ..+.+|||+|..+. ..++.. .++
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 36899999999999999999998765332222222222 234444432 25678999997432 122222 357
Q ss_pred CCcEEEEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEE
Q 030961 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 157 (168)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (168)
.+|++++|+|++++.++... ..|...+.... .+.|+++|+||+|+..... .... ....+...+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-----------~~~~----~~~~~~~~~ 339 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-----------PRID----RDEENKPIR 339 (426)
T ss_pred cCCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCCchh-----------HHHH----HHhcCCCce
Confidence 89999999999998877765 44444444433 4789999999999964311 0011 112344235
Q ss_pred EEecccCccCC
Q 030961 158 IECSSKTQQVC 168 (168)
Q Consensus 158 ~~~Sa~~~~~i 168 (168)
+++||++|+|+
T Consensus 340 v~ISAktG~GI 350 (426)
T PRK11058 340 VWLSAQTGAGI 350 (426)
T ss_pred EEEeCCCCCCH
Confidence 88999999985
No 175
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.85 E-value=4.6e-21 Score=129.08 Aligned_cols=128 Identities=18% Similarity=0.129 Sum_probs=87.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccc----cccccCCcEEEE
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR----PLSYRGADVFVL 85 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~~~~~~~~~i~ 85 (168)
+|+++|.+++|||||++++.+.. . ....+.+..+ ... .+|||||.......+ ...+.++|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~-~~~~~~~v~~------~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-T-LARKTQAVEF------NDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-c-cCccceEEEE------CCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 79999999999999999987643 1 1112222222 221 269999974332211 123679999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCC-cEEEEecccC
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-SYYIECSSKT 164 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 164 (168)
|+|+++.+++.. .|+..+ ..+.|+++++||+|+... ..+.+.+++...+. .+++++||++
T Consensus 71 v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~~-------------~~~~~~~~~~~~~~~~p~~~~Sa~~ 131 (158)
T PRK15467 71 VHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPDA-------------DVAATRKLLLETGFEEPIFELNSHD 131 (158)
T ss_pred EEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCcc-------------cHHHHHHHHHHcCCCCCEEEEECCC
Confidence 999998877633 333333 236799999999998542 23556677777775 4899999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
|+||
T Consensus 132 g~gi 135 (158)
T PRK15467 132 PQSV 135 (158)
T ss_pred ccCH
Confidence 9985
No 176
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.85 E-value=2.8e-20 Score=118.71 Aligned_cols=147 Identities=23% Similarity=0.309 Sum_probs=110.6
Q ss_pred CcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 4 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
...+.+||.++|..++|||||+.+|..... ..-.||.+.. .+++..+ ..+.+.+||.+|+...+..|..++.+.|++
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn-~k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFN-TKKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcc-eEEEeec-CcEEEEEEecCCccccchhhhhhhhccceE
Confidence 457899999999999999999999987653 2223443332 2334443 457889999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCC-------c
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-------S 155 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 155 (168)
|+|+|.+|+..|+++-+++...+.... ..+|+.|..||.|+.-. ...++.+...++ .
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta---------------a~~eeia~klnl~~lrdRsw 154 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA---------------AKVEEIALKLNLAGLRDRSW 154 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh---------------cchHHHHHhcchhhhhhceE
Confidence 999999999999988666666666654 68999999999998644 222223322222 3
Q ss_pred EEEEecccCccCC
Q 030961 156 YYIECSSKTQQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~~~~i 168 (168)
++-++||.+++|+
T Consensus 155 hIq~csals~eg~ 167 (185)
T KOG0074|consen 155 HIQECSALSLEGS 167 (185)
T ss_pred EeeeCccccccCc
Confidence 6778999998875
No 177
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.85 E-value=1e-20 Score=131.33 Aligned_cols=148 Identities=16% Similarity=0.093 Sum_probs=88.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC----CCCCCC---C--Cceeece-eEEEE----------ECCeEEEEEEEeCCCCcc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN----KFPTDY---I--PTVFDNF-SANVV----------AEGTTVNLGLWDTAGQED 68 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~----~~~~~~---~--~~~~~~~-~~~~~----------~~~~~~~~~i~D~~g~~~ 68 (168)
++|+++|++++|||||+++|+.. .+.... . .|....+ ...+. ..+....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999872 121111 1 1222222 11111 123467889999999876
Q ss_pred ccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHH
Q 030961 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 148 (168)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (168)
+..........+|++++|+|+.+....... +.+. .... .+.|+++++||+|+...... ....++.++.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~--~~~~~iiv~NK~Dl~~~~~~--------~~~~~~~~~~ 148 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEI--LCKKLIVVLNKIDLIPEEER--------ERKIEKMKKK 148 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHH--cCCCEEEEEECcccCCHHHH--------HHHHHHHHHH
Confidence 533333345678999999999875444332 2222 1221 25799999999998643210 0112222221
Q ss_pred -HHH-----hCCcEEEEecccCccCC
Q 030961 149 -RKQ-----IGASYYIECSSKTQQVC 168 (168)
Q Consensus 149 -~~~-----~~~~~~~~~Sa~~~~~i 168 (168)
... ....+++++||++|+|+
T Consensus 149 l~~~~~~~~~~~~~vi~iSa~~g~gi 174 (192)
T cd01889 149 LQKTLEKTRFKNSPIIPVSAKPGGGE 174 (192)
T ss_pred HHHHHHhcCcCCCCEEEEeccCCCCH
Confidence 111 12237999999999986
No 178
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.85 E-value=2.2e-20 Score=149.92 Aligned_cols=150 Identities=15% Similarity=0.199 Sum_probs=102.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeec---eeEEEEECCeEEEEEEEeCCCCccccccccccccCCcE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN---FSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (168)
.+...|+++|+.++|||||+++|....+.....+..+.. +......++....+.+|||||++.|..++...+..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 467799999999999999999999876654433333322 22233344556888999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHH---HHHHhC-CcEEE
Q 030961 83 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE---LRKQIG-ASYYI 158 (168)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~ 158 (168)
+++|+|++++...... +. +..+.. .++|+++++||+|+..... ....+++.. +...++ ..+++
T Consensus 322 aILVVDA~dGv~~QT~-E~-I~~~k~--~~iPiIVViNKiDl~~~~~---------e~v~~eL~~~~ll~e~~g~~vpvv 388 (742)
T CHL00189 322 AILIIAADDGVKPQTI-EA-INYIQA--ANVPIIVAINKIDKANANT---------ERIKQQLAKYNLIPEKWGGDTPMI 388 (742)
T ss_pred EEEEEECcCCCChhhH-HH-HHHHHh--cCceEEEEEECCCccccCH---------HHHHHHHHHhccchHhhCCCceEE
Confidence 9999999875433322 22 222322 4689999999999965321 001111111 122233 34899
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|+||
T Consensus 389 ~VSAktG~GI 398 (742)
T CHL00189 389 PISASQGTNI 398 (742)
T ss_pred EEECCCCCCH
Confidence 9999999986
No 179
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.84 E-value=6.6e-20 Score=148.31 Aligned_cols=148 Identities=18% Similarity=0.237 Sum_probs=101.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
.+.+.|+++|+.++|||||+++|.+..+.....+.++.... ..+..++ ..+.+|||||++.|..++...+..+|+++
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 46789999999999999999999887765544444433332 2333343 56788999999999999988899999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHH---HHHHHHhC-CcEEEEe
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG---EELRKQIG-ASYYIEC 160 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~ 160 (168)
+|+|+++...-... +.| ..... .++|++|++||+|+...+.. .+ ..+. ..++..++ ..+++++
T Consensus 366 LVVdAddGv~~qT~-e~i-~~a~~--~~vPiIVviNKiDl~~a~~e--------~V-~~eL~~~~~~~e~~g~~vp~vpv 432 (787)
T PRK05306 366 LVVAADDGVMPQTI-EAI-NHAKA--AGVPIIVAINKIDKPGANPD--------RV-KQELSEYGLVPEEWGGDTIFVPV 432 (787)
T ss_pred EEEECCCCCCHhHH-HHH-HHHHh--cCCcEEEEEECccccccCHH--------HH-HHHHHHhcccHHHhCCCceEEEE
Confidence 99999875322221 222 22222 46899999999999643210 01 1111 11233333 2489999
Q ss_pred cccCccCC
Q 030961 161 SSKTQQVC 168 (168)
Q Consensus 161 Sa~~~~~i 168 (168)
||++|+||
T Consensus 433 SAktG~GI 440 (787)
T PRK05306 433 SAKTGEGI 440 (787)
T ss_pred eCCCCCCc
Confidence 99999986
No 180
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.84 E-value=2.9e-20 Score=147.39 Aligned_cols=143 Identities=21% Similarity=0.211 Sum_probs=101.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC---CCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN---KFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
+.|+++|++++|||||+++|.+. .+...+.+.++.+.. ..+..++ ..+.+||+||++.|...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 46899999999999999999863 333344444444432 2344444 77889999999998887777889999999
Q ss_pred EEEeCCCh---hHHHHHHHhHHHHHchhCCCCc-EEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhC---CcEE
Q 030961 85 LAFSLVSR---ASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG---ASYY 157 (168)
Q Consensus 85 ~v~d~~~~---~s~~~~~~~~~~~l~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 157 (168)
+|+|++++ .+.+.+ ..+.. .++| ++|++||+|+.+... .....++.+.+...++ ..++
T Consensus 79 LVVDa~~G~~~qT~ehl-----~il~~--lgi~~iIVVlNK~Dlv~~~~--------~~~~~~ei~~~l~~~~~~~~~~i 143 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL-----AVLDL--LGIPHTIVVITKADRVNEEE--------IKRTEMFMKQILNSYIFLKNAKI 143 (581)
T ss_pred EEEECCCCCcHHHHHHH-----HHHHH--cCCCeEEEEEECCCCCCHHH--------HHHHHHHHHHHHHHhCCCCCCcE
Confidence 99999884 444332 22332 2577 999999999975432 0023445666665553 2489
Q ss_pred EEecccCccCC
Q 030961 158 IECSSKTQQVC 168 (168)
Q Consensus 158 ~~~Sa~~~~~i 168 (168)
+++||++|+||
T Consensus 144 i~vSA~tG~GI 154 (581)
T TIGR00475 144 FKTSAKTGQGI 154 (581)
T ss_pred EEEeCCCCCCc
Confidence 99999999986
No 181
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.84 E-value=2.6e-20 Score=129.41 Aligned_cols=150 Identities=20% Similarity=0.085 Sum_probs=93.8
Q ss_pred CcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCc----------cccccc
Q 030961 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE----------DYNRLR 73 (168)
Q Consensus 4 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~ 73 (168)
..+..++|+++|.+|+|||||+++|++..+...+.++.+.+....... ....+.+|||||.. .+..+.
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--VNDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--cCCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 345678999999999999999999998765444444444333222111 13678899999953 222233
Q ss_pred ccccc---CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH
Q 030961 74 PLSYR---GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 150 (168)
Q Consensus 74 ~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (168)
..+++ .++++++++|.+++.+... ..+...+.. .+.|+++++||+|+..... .....+++.....
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~--------~~~~~~~i~~~l~ 165 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE--YGIPVLIVLTKADKLKKGE--------RKKQLKKVRKALK 165 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH--cCCcEEEEEECcccCCHHH--------HHHHHHHHHHHHH
Confidence 33333 3468888999877554332 122233332 3689999999999965432 0012233444444
Q ss_pred HhCCcEEEEecccCccCC
Q 030961 151 QIGASYYIECSSKTQQVC 168 (168)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~i 168 (168)
.... .++++||++++|+
T Consensus 166 ~~~~-~~~~~Sa~~~~gi 182 (196)
T PRK00454 166 FGDD-EVILFSSLKKQGI 182 (196)
T ss_pred hcCC-ceEEEEcCCCCCH
Confidence 4344 7899999999885
No 182
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.84 E-value=3e-20 Score=143.09 Aligned_cols=159 Identities=12% Similarity=0.040 Sum_probs=99.5
Q ss_pred CCcceeeEEEEECCCCCCHHHHHHHHhcCC--CCCC----------------------CCC-----ceeece-eEEEEEC
Q 030961 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNK--FPTD----------------------YIP-----TVFDNF-SANVVAE 52 (168)
Q Consensus 3 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~--~~~~----------------------~~~-----~~~~~~-~~~~~~~ 52 (168)
+++.+.++|+++|++++|||||+++|+... .... .+. ..+.+. .....+.
T Consensus 1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~ 80 (425)
T PRK12317 1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE 80 (425)
T ss_pred CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence 345678999999999999999999998432 1100 000 001111 1122334
Q ss_pred CeEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh
Q 030961 53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 132 (168)
Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~ 132 (168)
...+.+.+|||||++.|.......+..+|++++|+|++++.++.....+++..+... ...|+++++||+|+.......
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~- 158 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDEKR- 158 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccHHH-
Confidence 456788999999998876655555789999999999987322222112233333222 234689999999997521100
Q ss_pred cCCCCCcccHHHHHHHHHHhCC----cEEEEecccCccCC
Q 030961 133 DHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQVC 168 (168)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i 168 (168)
.....++...+....+. .+++++||++|+||
T Consensus 159 -----~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi 193 (425)
T PRK12317 159 -----YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNV 193 (425)
T ss_pred -----HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCc
Confidence 00234556666665653 37999999999986
No 183
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.84 E-value=2.7e-20 Score=143.39 Aligned_cols=156 Identities=13% Similarity=0.036 Sum_probs=100.4
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC--CCCCC-----------------------------CCCceeeceeEEEEECC
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD-----------------------------YIPTVFDNFSANVVAEG 53 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 53 (168)
+.+.++|+++|+.++|||||+.+|+.. .+... .....+.+.. ......
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~-~~~~~~ 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVA-HWKFET 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEE-EEEEcc
Confidence 456799999999999999999999852 22110 0011111111 122344
Q ss_pred eEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHH-HHhHHHHHchhCCCCcEEEEeeCCcccccchhhh
Q 030961 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 132 (168)
Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~ 132 (168)
..+.+.+|||||++.|.......+..+|++++|+|++++++.... ...+.... +.....|++|++||+|+.+....
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~~~iIVviNK~Dl~~~~~~-- 159 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGINQLIVAINKMDSVNYDEE-- 159 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCCCeEEEEEEChhccCccHH--
Confidence 457889999999988876666667899999999999987533111 01112222 22233579999999999642110
Q ss_pred cCCCCCcccHHHHHHHHHHhCC----cEEEEecccCccCC
Q 030961 133 DHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQVC 168 (168)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i 168 (168)
......++.+.++...++ .+++++||++|+||
T Consensus 160 ----~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni 195 (426)
T TIGR00483 160 ----EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNV 195 (426)
T ss_pred ----HHHHHHHHHHHHHHHcCCCcccceEEEeeccccccc
Confidence 001234566777776663 47999999999986
No 184
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=5.2e-20 Score=139.45 Aligned_cols=146 Identities=17% Similarity=0.140 Sum_probs=97.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeE-EEEECCeEEEEEEEeCCCCccccc----cc---cccccCCc
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNR----LR---PLSYRGAD 81 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~----~~---~~~~~~~~ 81 (168)
.|.+||.||||||||+|++.+.+......+..+..... .+.. +....+.++||||...-.. +. ..++..++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~-~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRV-DDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEe-CCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 68999999999999999999876433222222222222 2222 2234578899999743211 11 12467899
Q ss_pred EEEEEEeCC---ChhHHHHHHHhHHHHHchhC---CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCC-
Q 030961 82 VFVLAFSLV---SRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA- 154 (168)
Q Consensus 82 ~~i~v~d~~---~~~s~~~~~~~~~~~l~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (168)
++++|+|++ +.+.++.. ..|++++..+. .+.|+++|+||+|+..... ..+....+....+.
T Consensus 240 vlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-----------l~~~l~~l~~~~~~~ 307 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-----------AEERAKAIVEALGWE 307 (390)
T ss_pred EEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-----------HHHHHHHHHHHhCCC
Confidence 999999988 45566665 67777777754 3689999999999965432 23444555555553
Q ss_pred cEEEEecccCccCC
Q 030961 155 SYYIECSSKTQQVC 168 (168)
Q Consensus 155 ~~~~~~Sa~~~~~i 168 (168)
.+++++||++++||
T Consensus 308 ~~Vi~ISA~tg~GI 321 (390)
T PRK12298 308 GPVYLISAASGLGV 321 (390)
T ss_pred CCEEEEECCCCcCH
Confidence 26899999999885
No 185
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=3.9e-20 Score=142.77 Aligned_cols=138 Identities=22% Similarity=0.245 Sum_probs=93.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeceeEEEEECCeEEEEEEEeCCCCcc--------ccccccccccC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPLSYRG 79 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~~ 79 (168)
+|+++|.+|+|||||+|+|.+.... ..+.++..+........++. .+.+|||||... +......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987632 22222222222334444444 577899999632 33344556789
Q ss_pred CcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEE
Q 030961 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (168)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (168)
+|++++|+|+.++.+... ..+...+.+ .+.|+++|+||+|+..... . ..+ ...++..++++
T Consensus 79 ad~vl~vvD~~~~~~~~d--~~i~~~l~~--~~~piilVvNK~D~~~~~~----------~----~~~-~~~lg~~~~~~ 139 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED--EEIAKWLRK--SGKPVILVANKIDGKKEDA----------V----AAE-FYSLGFGEPIP 139 (429)
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHHH--hCCCEEEEEECccCCcccc----------c----HHH-HHhcCCCCeEE
Confidence 999999999987655443 334444544 3689999999999865432 1 111 34567667999
Q ss_pred ecccCccCC
Q 030961 160 CSSKTQQVC 168 (168)
Q Consensus 160 ~Sa~~~~~i 168 (168)
+||++|.|+
T Consensus 140 vSa~~g~gv 148 (429)
T TIGR03594 140 ISAEHGRGI 148 (429)
T ss_pred EeCCcCCCh
Confidence 999999985
No 186
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=1.5e-19 Score=139.50 Aligned_cols=146 Identities=16% Similarity=0.111 Sum_probs=92.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccc----cccc---cccccC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY----NRLR---PLSYRG 79 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~----~~~~---~~~~~~ 79 (168)
...|++||.||||||||+++|.+.+......+-.+... .-.+...+ ..+.+||+||...- ..+. ..++..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 44789999999999999999998764322222222221 11233333 56888999996321 1111 223567
Q ss_pred CcEEEEEEeCCCh----hHHHHHHHhHHHHHchhC------------CCCcEEEEeeCCcccccchhhhcCCCCCcccHH
Q 030961 80 ADVFVLAFSLVSR----ASYENVLKKWIPELQHYS------------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA 143 (168)
Q Consensus 80 ~~~~i~v~d~~~~----~s~~~~~~~~~~~l~~~~------------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 143 (168)
++++++|+|+++. +.+... ..+..+|..+. .+.|++||+||+|+..... + .+
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e----------l-~e 304 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE----------L-AE 304 (500)
T ss_pred cCEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH----------H-HH
Confidence 9999999999753 334443 44444444332 3689999999999965432 1 22
Q ss_pred HHHHHHHHhCCcEEEEecccCccCC
Q 030961 144 QGEELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 144 ~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
.........++ ++|++||++++|+
T Consensus 305 ~l~~~l~~~g~-~Vf~ISA~tgeGL 328 (500)
T PRK12296 305 FVRPELEARGW-PVFEVSAASREGL 328 (500)
T ss_pred HHHHHHHHcCC-eEEEEECCCCCCH
Confidence 22333344566 8999999999985
No 187
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.83 E-value=1.2e-19 Score=143.38 Aligned_cols=113 Identities=20% Similarity=0.145 Sum_probs=79.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee----eceeEEEE-------------ECCeEEEEEEEeCCCCccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF----DNFSANVV-------------AEGTTVNLGLWDTAGQEDY 69 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~----~~~~~~~~-------------~~~~~~~~~i~D~~g~~~~ 69 (168)
+..-|+++|++++|||||+++|.+..+.....+..+ ..+..... +......+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 456799999999999999999998876443222221 11110000 0111123789999999999
Q ss_pred cccccccccCCcEEEEEEeCCC---hhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccc
Q 030961 70 NRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (168)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~ 126 (168)
..++...++.+|++++|+|+++ +.+++.+ ..+.. .++|+++++||+|+..
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-----~~l~~--~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRM--YKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-----HHHHH--cCCCEEEEEECCCccc
Confidence 9998888999999999999987 4444443 22222 3689999999999964
No 188
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.82 E-value=3.7e-19 Score=144.40 Aligned_cols=142 Identities=15% Similarity=0.138 Sum_probs=101.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCcccccccc----------cc-
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP----------LS- 76 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~----------~~- 76 (168)
.++|+++|+||||||||+|++.+.+......+..+.+ .+...+.....++.+|||||...+..... .+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve-~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVE-RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEe-eEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 5789999999999999999999876543333333322 22333455567788899999987754221 12
Q ss_pred -ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCc
Q 030961 77 -YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (168)
Q Consensus 77 -~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (168)
...+|++++|+|+++.+... .+..++.+ .++|+++++||+|+.+.+. + ..+.+++.+.+++
T Consensus 82 ~~~~aD~vI~VvDat~ler~l----~l~~ql~e--~giPvIvVlNK~Dl~~~~~----------i-~id~~~L~~~LG~- 143 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNL----YLTLQLLE--LGIPCIVALNMLDIAEKQN----------I-RIDIDALSARLGC- 143 (772)
T ss_pred hccCCCEEEEEecCCcchhhH----HHHHHHHH--cCCCEEEEEEchhhhhccC----------c-HHHHHHHHHHhCC-
Confidence 23799999999998865432 23344444 3699999999999875433 2 4567788888998
Q ss_pred EEEEecccCccCC
Q 030961 156 YYIECSSKTQQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~~~~i 168 (168)
+++++||++|+|+
T Consensus 144 pVvpiSA~~g~GI 156 (772)
T PRK09554 144 PVIPLVSTRGRGI 156 (772)
T ss_pred CEEEEEeecCCCH
Confidence 8999999999984
No 189
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.82 E-value=1.6e-19 Score=143.34 Aligned_cols=134 Identities=17% Similarity=0.206 Sum_probs=96.3
Q ss_pred CCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccc------cccc--cCCcEEEE
Q 030961 15 GDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLR------PLSY--RGADVFVL 85 (168)
Q Consensus 15 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~~--~~~~~~i~ 85 (168)
|++|+|||||+|++.+..+.....+..+.+.. ..+..++. ++++|||||++++.... ..++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999998765555555554442 34455554 46789999998876542 2222 37899999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
|+|+++.+.. ..+..++.+ .+.|+++++||+|+.+.+. + ..+.+.+++..+. +++++||++|
T Consensus 79 VvDat~ler~----l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~----------i-~~d~~~L~~~lg~-pvv~tSA~tg 140 (591)
T TIGR00437 79 VVDASNLERN----LYLTLQLLE--LGIPMILALNLVDEAEKKG----------I-RIDEEKLEERLGV-PVVPTSATEG 140 (591)
T ss_pred EecCCcchhh----HHHHHHHHh--cCCCEEEEEehhHHHHhCC----------C-hhhHHHHHHHcCC-CEEEEECCCC
Confidence 9999874432 223333333 4689999999999965432 2 2456788888897 8999999999
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
+|+
T Consensus 141 ~Gi 143 (591)
T TIGR00437 141 RGI 143 (591)
T ss_pred CCH
Confidence 985
No 190
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=1.9e-19 Score=139.15 Aligned_cols=148 Identities=20% Similarity=0.182 Sum_probs=94.5
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-C-CCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccc-----------
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKF-P-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR----------- 73 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------- 73 (168)
..++|+++|.+|+|||||+++|++... . ....++..+........++ ..+.+|||||........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 468999999999999999999997652 1 2222222222233333444 445679999964432211
Q ss_pred cccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhC
Q 030961 74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (168)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (168)
...++.+|++++|+|++++.+.... .+...+.+ .+.|+++++||+|+...... ....++........+
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~--~~~~~ivv~NK~Dl~~~~~~--------~~~~~~~~~~l~~~~ 317 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDL--RIAGLALE--AGRALVIVVNKWDLVDEKTM--------EEFKKELRRRLPFLD 317 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCcEEEEEECccCCCHHHH--------HHHHHHHHHhccccc
Confidence 1356789999999999988776653 44444444 36899999999999743210 011111222222223
Q ss_pred CcEEEEecccCccCC
Q 030961 154 ASYYIECSSKTQQVC 168 (168)
Q Consensus 154 ~~~~~~~Sa~~~~~i 168 (168)
..+++++||++|.||
T Consensus 318 ~~~i~~~SA~~~~gv 332 (435)
T PRK00093 318 YAPIVFISALTGQGV 332 (435)
T ss_pred CCCEEEEeCCCCCCH
Confidence 348999999999985
No 191
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.82 E-value=9.7e-20 Score=127.88 Aligned_cols=150 Identities=16% Similarity=0.054 Sum_probs=91.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC------------------------CCCc-----eeecee-EEEEECCeEEEEE
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTD------------------------YIPT-----VFDNFS-ANVVAEGTTVNLG 59 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~------------------------~~~~-----~~~~~~-~~~~~~~~~~~~~ 59 (168)
+|+++|++++|||||+++|+...-... .+.. .+.... ....+.....++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999975321100 0000 000110 1112223345778
Q ss_pred EEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCc
Q 030961 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVP 139 (168)
Q Consensus 60 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 139 (168)
+|||||++.|.......++.+|++++|+|++++..-.. ......+... ...++++++||+|+........ .
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~--~~~~~~~~~~-~~~~iIvviNK~D~~~~~~~~~------~ 151 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT--RRHSYILSLL-GIRHVVVAVNKMDLVDYSEEVF------E 151 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH--HHHHHHHHHc-CCCcEEEEEEchhcccCCHHHH------H
Confidence 89999998876655667889999999999987643222 2222222221 2245788999999864321000 0
Q ss_pred ccHHHHHHHHHHhCC--cEEEEecccCccCC
Q 030961 140 VTTAQGEELRKQIGA--SYYIECSSKTQQVC 168 (168)
Q Consensus 140 ~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i 168 (168)
....+.+.+...++. .+++++||++|.||
T Consensus 152 ~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni 182 (208)
T cd04166 152 EIVADYLAFAAKLGIEDITFIPISALDGDNV 182 (208)
T ss_pred HHHHHHHHHHHHcCCCCceEEEEeCCCCCCC
Confidence 123455666666664 35899999999986
No 192
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.82 E-value=1.8e-19 Score=143.16 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=101.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCC--CCC-----CC-C-----Cceeecee-EEEEE-----CCeEEEEEEEeCCCC
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNK--FPT-----DY-I-----PTVFDNFS-ANVVA-----EGTTVNLGLWDTAGQ 66 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~--~~~-----~~-~-----~~~~~~~~-~~~~~-----~~~~~~~~i~D~~g~ 66 (168)
+..-+++++|+.++|||||+.+|+... +.. .+ + ...+.++. ..... ++..+.+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 456689999999999999999998631 111 00 0 01111111 11111 556789999999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHH
Q 030961 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE 146 (168)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
..|...+...++.+|++++|+|++++...... ..|..... .+.|+++++||+|+..... .+...
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~~---~~lpiIvViNKiDl~~a~~------------~~v~~ 148 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NDLEIIPVLNKIDLPAADP------------ERVKQ 148 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEEECCCCCcccH------------HHHHH
Confidence 99988888999999999999999987666554 44544332 3689999999999864321 22233
Q ss_pred HHHHHhCCc--EEEEecccCccCC
Q 030961 147 ELRKQIGAS--YYIECSSKTQQVC 168 (168)
Q Consensus 147 ~~~~~~~~~--~~~~~Sa~~~~~i 168 (168)
++...+++. .++++||++|.||
T Consensus 149 ei~~~lg~~~~~vi~iSAktG~GI 172 (600)
T PRK05433 149 EIEDVIGIDASDAVLVSAKTGIGI 172 (600)
T ss_pred HHHHHhCCCcceEEEEecCCCCCH
Confidence 444445542 4899999999985
No 193
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=1.4e-19 Score=146.82 Aligned_cols=144 Identities=22% Similarity=0.230 Sum_probs=96.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccc----------cccc-
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----------NRLR- 73 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~~- 73 (168)
..++|+++|.+|+|||||+|+|++... ...+.+|..+.+...+.+++.. +.+|||||...- ..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 458999999999999999999998864 2333444433344455666655 457999996421 1111
Q ss_pred cccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHH-HHH--
Q 030961 74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-LRK-- 150 (168)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 150 (168)
...++.+|++++|+|++++.+.... .+...+.. .+.|+++|+||+|+.+... .+.... +..
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~--~i~~~~~~--~~~piIiV~NK~DL~~~~~------------~~~~~~~~~~~l 590 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDL--KVMSMAVD--AGRALVLVFNKWDLMDEFR------------RQRLERLWKTEF 590 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEEchhcCChhH------------HHHHHHHHHHhc
Confidence 2236789999999999998887765 34444443 4689999999999965321 111111 112
Q ss_pred -HhCCcEEEEecccCccCC
Q 030961 151 -QIGASYYIECSSKTQQVC 168 (168)
Q Consensus 151 -~~~~~~~~~~Sa~~~~~i 168 (168)
.....+.+++||++|.||
T Consensus 591 ~~~~~~~ii~iSAktg~gv 609 (712)
T PRK09518 591 DRVTWARRVNLSAKTGWHT 609 (712)
T ss_pred cCCCCCCEEEEECCCCCCH
Confidence 123346789999999985
No 194
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.82 E-value=5.9e-20 Score=119.67 Aligned_cols=128 Identities=22% Similarity=0.212 Sum_probs=93.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccc----cccccccCCcEEEE
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR----LRPLSYRGADVFVL 85 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~~~~~~~~~~i~ 85 (168)
||++||+.|||||||+++|.+... .+..|....|. =.++||||...-.. ..-....+||++++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~-----------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY-----------DNTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec-----------ccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 799999999999999999988653 33333332222 13499999643222 12222458999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
+.|++++.+.-. ..+...+ +.|+|-|.||+|+.... ...+.++++.+..|+.++|++|+.+|
T Consensus 70 l~dat~~~~~~p--P~fa~~f-----~~pvIGVITK~Dl~~~~-----------~~i~~a~~~L~~aG~~~if~vS~~~~ 131 (143)
T PF10662_consen 70 LQDATEPRSVFP--PGFASMF-----NKPVIGVITKIDLPSDD-----------ANIERAKKWLKNAGVKEIFEVSAVTG 131 (143)
T ss_pred EecCCCCCccCC--chhhccc-----CCCEEEEEECccCccch-----------hhHHHHHHHHHHcCCCCeEEEECCCC
Confidence 999998876544 3333333 46999999999998432 35678899999999988999999999
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
+||
T Consensus 132 eGi 134 (143)
T PF10662_consen 132 EGI 134 (143)
T ss_pred cCH
Confidence 986
No 195
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=5.6e-19 Score=117.76 Aligned_cols=147 Identities=21% Similarity=0.219 Sum_probs=108.2
Q ss_pred CCcceeeEEEEECCCCCCHHHHHHHHhcCCCC--------CCCCC----ceeeceeEEEEECCeEEEEEEEeCCCCcccc
Q 030961 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFP--------TDYIP----TVFDNFSANVVAEGTTVNLGLWDTAGQEDYN 70 (168)
Q Consensus 3 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~--------~~~~~----~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 70 (168)
+.+.+..||++.|+.++||||++..++..... ..+.. |...+|......+ ...+.+++||||++|.
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~--~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE--DTGVHLFGTPGQERFK 82 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC--cceEEEecCCCcHHHH
Confidence 34567899999999999999999999887531 11111 2222222222222 2455669999999999
Q ss_pred ccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH
Q 030961 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 150 (168)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (168)
-+|...++++.++++++|.+++..+ .. .+++..+....+ +|++|++||.|+.... +.++.+++..
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a~------------ppe~i~e~l~ 147 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDAL------------PPEKIREALK 147 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCCC------------CHHHHHHHHH
Confidence 9999999999999999999999988 33 567776666433 9999999999998873 4555555554
Q ss_pred Hh--CCcEEEEecccCccC
Q 030961 151 QI--GASYYIECSSKTQQV 167 (168)
Q Consensus 151 ~~--~~~~~~~~Sa~~~~~ 167 (168)
.- .. +.++.+|..+++
T Consensus 148 ~~~~~~-~vi~~~a~e~~~ 165 (187)
T COG2229 148 LELLSV-PVIEIDATEGEG 165 (187)
T ss_pred hccCCC-ceeeeecccchh
Confidence 43 44 889999998775
No 196
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.81 E-value=3.5e-19 Score=118.94 Aligned_cols=140 Identities=21% Similarity=0.182 Sum_probs=91.9
Q ss_pred EECCCCCCHHHHHHHHhcCCCC-CCCCCceeece-eEEEEECCeEEEEEEEeCCCCcccccccc-------ccccCCcEE
Q 030961 13 TVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRP-------LSYRGADVF 83 (168)
Q Consensus 13 vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~~~~~~~~ 83 (168)
++|.+|+|||||++++.+.... ....+...... ....... ....+.+||+||......... ..++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999986543 22222222111 2222222 156788899999876654333 367889999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHH---HHHHHHHHhCCcEEEEe
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA---QGEELRKQIGASYYIEC 160 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 160 (168)
++|+|+.+..+.... . +...... .+.|+++++||+|+..... .... .........+ .+++++
T Consensus 80 l~v~~~~~~~~~~~~-~-~~~~~~~--~~~~~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~ 144 (163)
T cd00880 80 LFVVDADLRADEEEE-K-LLELLRE--RGKPVLLVLNKIDLLPEEE----------EEELLELRLLILLLLLG-LPVIAV 144 (163)
T ss_pred EEEEeCCCCCCHHHH-H-HHHHHHh--cCCeEEEEEEccccCChhh----------HHHHHHHHHhhcccccC-CceEEE
Confidence 999999998877764 2 3344433 4789999999999976543 1111 1122223333 489999
Q ss_pred cccCccCC
Q 030961 161 SSKTQQVC 168 (168)
Q Consensus 161 Sa~~~~~i 168 (168)
||+++.|+
T Consensus 145 sa~~~~~v 152 (163)
T cd00880 145 SALTGEGI 152 (163)
T ss_pred eeeccCCH
Confidence 99999885
No 197
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=2.5e-19 Score=145.34 Aligned_cols=141 Identities=20% Similarity=0.182 Sum_probs=92.0
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeece-eEEEEECCeEEEEEEEeCCCCccc--------ccccccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY--------NRLRPLS 76 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~ 76 (168)
...+|+++|.+++|||||+|+|++.+... ...+..+.+. ......++ ..+.+|||||.+.. .......
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 45789999999999999999999876421 2223222222 22233333 45777999997632 2223345
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcE
Q 030961 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (168)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (168)
++.+|++++|+|+++...... ..|...+.+ .+.|+++|+||+|+..... .....+ ..+...
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d--~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~-------------~~~~~~--~lg~~~ 412 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD--ERIVRMLRR--AGKPVVLAVNKIDDQASEY-------------DAAEFW--KLGLGE 412 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHh--cCCCEEEEEECcccccchh-------------hHHHHH--HcCCCC
Confidence 789999999999987533322 456666654 5799999999999854311 112222 234334
Q ss_pred EEEecccCccCC
Q 030961 157 YIECSSKTQQVC 168 (168)
Q Consensus 157 ~~~~Sa~~~~~i 168 (168)
.+++||++|.||
T Consensus 413 ~~~iSA~~g~GI 424 (712)
T PRK09518 413 PYPISAMHGRGV 424 (712)
T ss_pred eEEEECCCCCCc
Confidence 679999999986
No 198
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.4e-20 Score=123.93 Aligned_cols=149 Identities=20% Similarity=0.274 Sum_probs=106.4
Q ss_pred CcceeeEEEEECCCCCCHHHHHHHHhcCC---C----CCCCCCceeeceeEEEEECCeEEEEEEEeCCCCcccccccccc
Q 030961 4 SASRFIKCVTVGDGAVGKTCMLICYTSNK---F----PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLS 76 (168)
Q Consensus 4 ~~~~~~~i~vvG~~~~GKStli~~l~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 76 (168)
.+...+-++++|..++|||||+-..-... + +....+|.+.... ++.+. ...+.+||.+|++..+++|..+
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig-~i~v~--~~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG-TIEVC--NAPLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec-ceeec--cceeEEEEcCChHHHHHHHHHH
Confidence 34567889999999999999998764321 1 1223344444332 11222 4567779999999999999999
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH-----
Q 030961 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK----- 150 (168)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 150 (168)
+..+|++++++|++|++.|+.....+-..+..-. .+.|+++.+||.|+.+.- ...+......
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~------------~~~El~~~~~~~e~~ 157 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM------------EAAELDGVFGLAELI 157 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh------------hHHHHHHHhhhhhhc
Confidence 9999999999999999999987444433333332 689999999999998773 3333333322
Q ss_pred -HhCCcEEEEecccCccCC
Q 030961 151 -QIGASYYIECSSKTQQVC 168 (168)
Q Consensus 151 -~~~~~~~~~~Sa~~~~~i 168 (168)
+..+ ++.++||.+|+||
T Consensus 158 ~~rd~-~~~pvSal~gegv 175 (197)
T KOG0076|consen 158 PRRDN-PFQPVSALTGEGV 175 (197)
T ss_pred CCccC-ccccchhhhcccH
Confidence 2233 7899999999986
No 199
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.80 E-value=8.4e-20 Score=126.32 Aligned_cols=148 Identities=20% Similarity=0.210 Sum_probs=98.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCC-------------C-----CceeeceeEEEEE--CCeEEEEEEEeCCCC
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-------------I-----PTVFDNFSANVVA--EGTTVNLGLWDTAGQ 66 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~-------------~-----~~~~~~~~~~~~~--~~~~~~~~i~D~~g~ 66 (168)
+.++|+++|+.++|||||+.+|+...-.... . ...+.. ...... ......+.++|+||+
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~-~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITID-LSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSS-SEEEEEEBTESSEEEEEEEESSS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccc-cccccccccccccceeecccccc
Confidence 4689999999999999999999854311100 0 000111 111222 255677888999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHH
Q 030961 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE 146 (168)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
..|.......+..+|++++|+|+.++..... .+.+..+.. .++|+++++||+|+...+. ....++..
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~--~~~l~~~~~--~~~p~ivvlNK~D~~~~~~---------~~~~~~~~ 147 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQT--EEHLKILRE--LGIPIIVVLNKMDLIEKEL---------EEIIEEIK 147 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHH--HHHHHHHHH--TT-SEEEEEETCTSSHHHH---------HHHHHHHH
T ss_pred cceeecccceecccccceeeeeccccccccc--ccccccccc--cccceEEeeeeccchhhhH---------HHHHHHHH
Confidence 9888877778999999999999987755443 455555555 3688999999999983321 01122222
Q ss_pred -HHHHHhC-----CcEEEEecccCccCC
Q 030961 147 -ELRKQIG-----ASYYIECSSKTQQVC 168 (168)
Q Consensus 147 -~~~~~~~-----~~~~~~~Sa~~~~~i 168 (168)
.+.+.++ ..+++++||++|.|+
T Consensus 148 ~~l~~~~~~~~~~~~~vi~~Sa~~g~gi 175 (188)
T PF00009_consen 148 EKLLKEYGENGEEIVPVIPISALTGDGI 175 (188)
T ss_dssp HHHHHHTTSTTTSTEEEEEEBTTTTBTH
T ss_pred HHhccccccCccccceEEEEecCCCCCH
Confidence 3433342 357999999999985
No 200
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=4.6e-19 Score=133.21 Aligned_cols=139 Identities=19% Similarity=0.162 Sum_probs=100.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeceeEEEEECCeEEEEEEEeCCCCcccc---------ccccccc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN---------RLRPLSY 77 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~ 77 (168)
..|+++|.||+|||||+|||++.+.. ..+..+..+.........+.. +.++||+|-+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 67999999999999999999998753 444444455545555555555 7779999976432 1223346
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEE
Q 030961 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 157 (168)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (168)
..||+++||+|....-+-.+ +...+.|.+ .+.|+++|+||+|.... ++...-..++|....
T Consensus 82 ~eADvilfvVD~~~Git~~D--~~ia~~Lr~--~~kpviLvvNK~D~~~~---------------e~~~~efyslG~g~~ 142 (444)
T COG1160 82 EEADVILFVVDGREGITPAD--EEIAKILRR--SKKPVILVVNKIDNLKA---------------EELAYEFYSLGFGEP 142 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHHh--cCCCEEEEEEcccCchh---------------hhhHHHHHhcCCCCc
Confidence 78999999999877665554 456666664 56999999999998532 333344455777788
Q ss_pred EEecccCccCC
Q 030961 158 IECSSKTQQVC 168 (168)
Q Consensus 158 ~~~Sa~~~~~i 168 (168)
+.+||..|.|+
T Consensus 143 ~~ISA~Hg~Gi 153 (444)
T COG1160 143 VPISAEHGRGI 153 (444)
T ss_pred eEeehhhccCH
Confidence 99999999885
No 201
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.80 E-value=5.5e-19 Score=123.63 Aligned_cols=149 Identities=15% Similarity=0.109 Sum_probs=89.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---CCC--CCCceeeceeE-EEE-----------------------EC--C----
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKF---PTD--YIPTVFDNFSA-NVV-----------------------AE--G---- 53 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~---~~~--~~~~~~~~~~~-~~~-----------------------~~--~---- 53 (168)
++|.++|+.|+|||||+..+.+... ... ...++...+.. ... .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4789999999999999999865311 000 00011111000 000 00 1
Q ss_pred eEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhc
Q 030961 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 133 (168)
Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~ 133 (168)
...++.+|||||++.|...+...+..+|++++|+|++++...... ...+..+... ...|+++++||+|+......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t-~~~l~~~~~~-~~~~iiivvNK~Dl~~~~~~--- 155 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQT-SEHLAALEIM-GLKHIIIVQNKIDLVKEEQA--- 155 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcch-HHHHHHHHHc-CCCcEEEEEEchhccCHHHH---
Confidence 126788999999998877777778889999999999874211111 1122222221 23579999999999753210
Q ss_pred CCCCCcccHHHHHHHHHHh---CCcEEEEecccCccCC
Q 030961 134 HPGLVPVTTAQGEELRKQI---GASYYIECSSKTQQVC 168 (168)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i 168 (168)
....++.+++...+ +. +++++||++|+||
T Consensus 156 -----~~~~~~i~~~~~~~~~~~~-~i~~vSA~~g~gi 187 (203)
T cd01888 156 -----LENYEQIKKFVKGTIAENA-PIIPISAQLKYNI 187 (203)
T ss_pred -----HHHHHHHHHHHhccccCCC-cEEEEeCCCCCCH
Confidence 01223444444433 33 7999999999985
No 202
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.80 E-value=1.1e-21 Score=130.63 Aligned_cols=152 Identities=29% Similarity=0.459 Sum_probs=127.3
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEE-EEC-CeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-VAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
.-+|+.++|.-|+|||+++.|++...|...|..+++.++..++ .-+ ...+++++||..||+++-.|...+++.+++.+
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 4678999999999999999999999888888888888885433 333 34578899999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC-----CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEE
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (168)
+|||+++..+|+.+ ..|.+.+.... ..+|++++.||||+.+... .......-+++++.|....++
T Consensus 104 iVfdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~---------~~~~~~~d~f~kengf~gwte 173 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK---------NEATRQFDNFKKENGFEGWTE 173 (229)
T ss_pred EEEEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChHhh---------hhhHHHHHHHHhccCccceee
Confidence 99999999999998 88999887765 2478899999999986632 011355677888899988999
Q ss_pred ecccCccCC
Q 030961 160 CSSKTQQVC 168 (168)
Q Consensus 160 ~Sa~~~~~i 168 (168)
+|++.+.||
T Consensus 174 ts~Kenkni 182 (229)
T KOG4423|consen 174 TSAKENKNI 182 (229)
T ss_pred eccccccCh
Confidence 999998875
No 203
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=1.3e-18 Score=120.78 Aligned_cols=150 Identities=20% Similarity=0.190 Sum_probs=97.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC--C-----C----CCCC---ceeece-eEEEEECCeEEEEEEEeCCCCcccccc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKF--P-----T----DYIP---TVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL 72 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~--~-----~----~~~~---~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 72 (168)
.++|+++|+.++|||||+++|++..- . . ...+ ..+... ...........++.++||||...|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 47899999999999999999986310 0 0 0000 001111 112223444567788999999887766
Q ss_pred ccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCc-EEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHH
Q 030961 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151 (168)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (168)
....+..+|++++|+|+..+..-.. ...+..+.. .++| ++++.||+|+..... . .....++.+.+...
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~--~~~~~iIvviNK~D~~~~~~-~------~~~~~~~i~~~l~~ 150 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQT--REHLLLARQ--VGVPYIVVFLNKADMVDDEE-L------LELVEMEVRELLSK 150 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCcEEEEEeCCCCCCcHH-H------HHHHHHHHHHHHHH
Confidence 6777889999999999987543332 344445544 3466 778899999864321 0 01233456666655
Q ss_pred hCC----cEEEEecccCccCC
Q 030961 152 IGA----SYYIECSSKTQQVC 168 (168)
Q Consensus 152 ~~~----~~~~~~Sa~~~~~i 168 (168)
.+. ++++++||++|.|+
T Consensus 151 ~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 151 YGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred hcccccCCeEEEeeCccccCC
Confidence 543 58999999999874
No 204
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.78 E-value=5.5e-19 Score=135.42 Aligned_cols=153 Identities=22% Similarity=0.345 Sum_probs=113.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
-...+||+++|+.|+||||||-.+....|+.. .|..-.+......+....+...+.|++..+.-+......++.||+++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~-VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA-VPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhcccc-ccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 35689999999999999999999999988654 22222222222233444556788999877665555667789999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC---CCCcEEEEeeCCcccccchhhhcCCCCCcccHHH-HHHHHHHh-CCcEEEE
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ-GEELRKQI-GASYYIE 159 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~ 159 (168)
++|+++++++++.+...|+..+.+.. .++|+|+||||+|...... .+.+. ...+..++ .+...|+
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~----------~s~e~~~~pim~~f~EiEtcie 154 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN----------NSDEVNTLPIMIAFAEIETCIE 154 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc----------cchhHHHHHHHHHhHHHHHHHh
Confidence 99999999999999999999999988 6899999999999987754 22222 23333323 3335688
Q ss_pred ecccCccCC
Q 030961 160 CSSKTQQVC 168 (168)
Q Consensus 160 ~Sa~~~~~i 168 (168)
|||++-.|+
T Consensus 155 cSA~~~~n~ 163 (625)
T KOG1707|consen 155 CSALTLANV 163 (625)
T ss_pred hhhhhhhhh
Confidence 999886653
No 205
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.77 E-value=8.6e-18 Score=126.41 Aligned_cols=150 Identities=20% Similarity=0.182 Sum_probs=105.8
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeceeEEEEECCeEEEEEEEeCCCCcccccccc----------
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP---------- 74 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~---------- 74 (168)
..+||+++|.|++|||||+|++++... ......|..+.....+..++..+.+ +||.|...-....+
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~l--iDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVL--IDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEE--EECCCCCcccccccceEEEeehhh
Confidence 469999999999999999999998753 3344445555556666677776666 99999543222111
Q ss_pred -ccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhC
Q 030961 75 -LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (168)
Q Consensus 75 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (168)
..+..++++++|+|++.+.+-+. ......+.+ ...+++||.||+|+...+....+ ...++........+
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD--~~ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~------~~k~~i~~~l~~l~ 324 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQD--LRIAGLIEE--AGRGIVIVVNKWDLVEEDEATME------EFKKKLRRKLPFLD 324 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHH--HHHHHHHHH--cCCCeEEEEEccccCCchhhHHH------HHHHHHHHHhcccc
Confidence 23567999999999998887766 456666666 47999999999999776331100 22334444445556
Q ss_pred CcEEEEecccCccCC
Q 030961 154 ASYYIECSSKTQQVC 168 (168)
Q Consensus 154 ~~~~~~~Sa~~~~~i 168 (168)
+.+.+++||++|.|+
T Consensus 325 ~a~i~~iSA~~~~~i 339 (444)
T COG1160 325 FAPIVFISALTGQGL 339 (444)
T ss_pred CCeEEEEEecCCCCh
Confidence 678899999999885
No 206
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.77 E-value=6.7e-18 Score=133.85 Aligned_cols=113 Identities=22% Similarity=0.224 Sum_probs=78.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCC----ceeeceeEEEEE---CCeE-----E-----EEEEEeCCCCcc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP----TVFDNFSANVVA---EGTT-----V-----NLGLWDTAGQED 68 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~----~~~~~~~~~~~~---~~~~-----~-----~~~i~D~~g~~~ 68 (168)
.+.+.|+++|++++|||||+++|.+......... +++..+...... .+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 4566899999999999999999987654333222 222111100000 0111 1 167899999999
Q ss_pred ccccccccccCCcEEEEEEeCCC---hhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccc
Q 030961 69 YNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125 (168)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~ 125 (168)
|..++...++.+|++++|+|+++ +.++..+ . .+.. .++|+++++||+|+.
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~----~~~~--~~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI-N----ILKR--RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-H----HHHH--cCCCEEEEEECcCCc
Confidence 99888888889999999999987 5555443 2 2222 468999999999985
No 207
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.77 E-value=6.3e-18 Score=134.65 Aligned_cols=147 Identities=17% Similarity=0.174 Sum_probs=93.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC---CCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN---KFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
-|.++|+.++|||||+++|.+. .+.+.....++.+.............+.+|||||++.|.......+.++|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 4789999999999999999863 3333322222222211111111233478899999998876666668899999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhCCCCc-EEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCC--cEEEEeccc
Q 030961 87 FSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA--SYYIECSSK 163 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 163 (168)
+|++++..-.. .+.+..+... ++| ++||+||+|+.+... .....++..++....++ .+++++||+
T Consensus 82 Vda~eg~~~qT--~ehl~il~~l--gi~~iIVVlNKiDlv~~~~--------~~~v~~ei~~~l~~~~~~~~~ii~VSA~ 149 (614)
T PRK10512 82 VACDDGVMAQT--REHLAILQLT--GNPMLTVALTKADRVDEAR--------IAEVRRQVKAVLREYGFAEAKLFVTAAT 149 (614)
T ss_pred EECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEECCccCCHHH--------HHHHHHHHHHHHHhcCCCCCcEEEEeCC
Confidence 99987433222 2233333332 355 579999999965321 00123455555555442 479999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|+|+
T Consensus 150 tG~gI 154 (614)
T PRK10512 150 EGRGI 154 (614)
T ss_pred CCCCC
Confidence 99986
No 208
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.77 E-value=2.1e-18 Score=122.03 Aligned_cols=153 Identities=13% Similarity=-0.001 Sum_probs=90.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC--------------C--------CCCce-----eece-eEEEEECCeEEEEE
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNK--FPT--------------D--------YIPTV-----FDNF-SANVVAEGTTVNLG 59 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~--~~~--------------~--------~~~~~-----~~~~-~~~~~~~~~~~~~~ 59 (168)
+|+++|+.++|||||+.+|+... ... . .+.+. +... .....+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999987421 100 0 00000 0001 11122333457788
Q ss_pred EEeCCCCccccccccccccCCcEEEEEEeCCChhH-----H-HHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhc
Q 030961 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS-----Y-ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 133 (168)
Q Consensus 60 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-----~-~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~ 133 (168)
+|||||+..|...+...+..+|++++|+|++++.. . ... ......... ....|+++++||+|+........
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~iiivvNK~Dl~~~~~~~~- 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQT-REHALLART-LGVKQLIVAVNKMDDVTVNWSEE- 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccch-HHHHHHHHH-cCCCeEEEEEEccccccccccHH-
Confidence 89999998776666666788999999999988421 1 111 122222222 22368999999999973210000
Q ss_pred CCCCCcccHHHHHHHHHHhCC----cEEEEecccCccCC
Q 030961 134 HPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQVC 168 (168)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i 168 (168)
......+++..+....+. .+++++||++|+||
T Consensus 158 ---~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi 193 (219)
T cd01883 158 ---RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNL 193 (219)
T ss_pred ---HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCC
Confidence 000122334444455543 47999999999986
No 209
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.77 E-value=4e-18 Score=120.12 Aligned_cols=112 Identities=21% Similarity=0.232 Sum_probs=79.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC-----------CCc------eeecee-E--EEEE---CCeEEEEEEEeCCCC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDY-----------IPT------VFDNFS-A--NVVA---EGTTVNLGLWDTAGQ 66 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~-----------~~~------~~~~~~-~--~~~~---~~~~~~~~i~D~~g~ 66 (168)
+|+++|+.++|||||+++|+........ ..+ .+..+. . .... ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875432110 000 011110 1 1111 355788999999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccc
Q 030961 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125 (168)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~ 125 (168)
..|.......+..+|++++|+|+.+..+... ..++..+.. .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECcccC
Confidence 9988777888899999999999988776643 344444433 358999999999985
No 210
>PRK10218 GTP-binding protein; Provisional
Probab=99.77 E-value=1.3e-17 Score=132.31 Aligned_cols=147 Identities=12% Similarity=0.048 Sum_probs=100.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc--CCCCCCCC------------Cceeece-eEEEEECCeEEEEEEEeCCCCccccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS--NKFPTDYI------------PTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR 71 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~--~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~ 71 (168)
...+|+++|+.++|||||+.+|+. +.+..... .+.+..+ .+...+....+.+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 467899999999999999999996 33322211 1122222 23344556678899999999999999
Q ss_pred cccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHH
Q 030961 72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151 (168)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (168)
.+...++.+|++++|+|+.+...... ..++..+.. .++|.++++||+|+...+.. ...++...+...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt--~~~l~~a~~--~gip~IVviNKiD~~~a~~~---------~vl~ei~~l~~~ 150 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT--RFVTKKAFA--YGLKPIVVINKVDRPGARPD---------WVVDQVFDLFVN 150 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH--HHHHHHHHH--cCCCEEEEEECcCCCCCchh---------HHHHHHHHHHhc
Confidence 99999999999999999987654433 333343333 36899999999998754320 112233333211
Q ss_pred -------hCCcEEEEecccCccC
Q 030961 152 -------IGASYYIECSSKTQQV 167 (168)
Q Consensus 152 -------~~~~~~~~~Sa~~~~~ 167 (168)
..+ +++++||++|.|
T Consensus 151 l~~~~~~~~~-PVi~~SA~~G~~ 172 (607)
T PRK10218 151 LDATDEQLDF-PIVYASALNGIA 172 (607)
T ss_pred cCccccccCC-CEEEeEhhcCcc
Confidence 233 789999999974
No 211
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.77 E-value=4e-17 Score=116.39 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=54.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeceeEEEEECCeEEEEEEEeCCCCccccc-------cccccccCCc
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR-------LRPLSYRGAD 81 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~~ 81 (168)
+++++|.+|+|||||+++|.+..... .+..+........+.+++ ..+++||+||...... .....++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 68999999999999999999875322 111111111122333443 5677899999754331 1224578999
Q ss_pred EEEEEEeCCChh
Q 030961 82 VFVLAFSLVSRA 93 (168)
Q Consensus 82 ~~i~v~d~~~~~ 93 (168)
++++|+|++++.
T Consensus 80 ~il~V~D~t~~~ 91 (233)
T cd01896 80 LILMVLDATKPE 91 (233)
T ss_pred EEEEEecCCcch
Confidence 999999998765
No 212
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.76 E-value=2.7e-18 Score=122.94 Aligned_cols=122 Identities=17% Similarity=0.180 Sum_probs=89.3
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccc------------ccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY------------NRL 72 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------~~~ 72 (168)
..+.++|+++|.||+|||||.|.+++.+.......+-+++......+.....++.++||||.-.- ..-
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 35789999999999999999999999987665555555555555566777889999999994221 111
Q ss_pred ccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccch
Q 030961 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129 (168)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~ 129 (168)
....+..||.+++++|+++.-.... ...+..+.++ ..+|-++|.||+|......
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y-s~ips~lvmnkid~~k~k~ 202 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLH--PRVLHMLEEY-SKIPSILVMNKIDKLKQKR 202 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHH-hcCCceeeccchhcchhhh
Confidence 2233567999999999987332222 3455556555 4789999999999887654
No 213
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.5e-18 Score=111.21 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=111.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
++..+++++|..|+||||+..++.-+.. ..+.|+++.... .+..+..++++||..|+-..++.|..++.+.+++|+
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 4789999999999999999988876543 344676665443 344467888999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHH-----HHHHhCCcEEEE
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-----LRKQIGASYYIE 159 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 159 (168)
|+|.+|++.......+++..+.+.. ....+++++||.|.... ....++.. -.+..- ..+|+
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~------------~t~~E~~~~L~l~~Lk~r~-~~Iv~ 158 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA------------LTRSEVLKMLGLQKLKDRI-WQIVK 158 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh------------hhHHHHHHHhChHHHhhhe-eEEEe
Confidence 9999998877766567777777755 56888999999998654 22222211 112222 47899
Q ss_pred ecccCccCC
Q 030961 160 CSSKTQQVC 168 (168)
Q Consensus 160 ~Sa~~~~~i 168 (168)
+||.+|+|+
T Consensus 159 tSA~kg~Gl 167 (182)
T KOG0072|consen 159 TSAVKGEGL 167 (182)
T ss_pred eccccccCC
Confidence 999999985
No 214
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.75 E-value=8e-18 Score=128.83 Aligned_cols=152 Identities=17% Similarity=0.085 Sum_probs=93.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC---CC--CCceeecee-----------------EEEEECC------eEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPT---DY--IPTVFDNFS-----------------ANVVAEG------TTVN 57 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~---~~--~~~~~~~~~-----------------~~~~~~~------~~~~ 57 (168)
.+.++|+++|+.++|||||+.+|.+..... .. .-|....+. .....++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 457899999999999999999996532111 00 001111110 0000011 1467
Q ss_pred EEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCC
Q 030961 58 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 137 (168)
Q Consensus 58 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 137 (168)
+.+||+||++.|...+...+..+|++++|+|++++...... .+.+..+... .-.|+++++||+|+.......
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt-~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~~~------ 153 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-KEHLMALEII-GIKNIVIVQNKIDLVSKEKAL------ 153 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccch-HHHHHHHHHc-CCCeEEEEEEccccCCHHHHH------
Confidence 88999999999887777777889999999999865311111 2222333222 235789999999997543200
Q ss_pred CcccHHHHHHHHHHh---CCcEEEEecccCccCC
Q 030961 138 VPVTTAQGEELRKQI---GASYYIECSSKTQQVC 168 (168)
Q Consensus 138 ~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i 168 (168)
...++...+.... ++ +++++||++|+|+
T Consensus 154 --~~~~~i~~~l~~~~~~~~-~ii~vSA~~g~gi 184 (406)
T TIGR03680 154 --ENYEEIKEFVKGTVAENA-PIIPVSALHNANI 184 (406)
T ss_pred --HHHHHHHhhhhhcccCCC-eEEEEECCCCCCh
Confidence 1223444444433 44 8999999999986
No 215
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.75 E-value=1.4e-17 Score=118.85 Aligned_cols=114 Identities=18% Similarity=0.099 Sum_probs=81.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-----C-CCCCce----------eece-eEEEEECCeEEEEEEEeCCCCcccccc
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFP-----T-DYIPTV----------FDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL 72 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~-----~-~~~~~~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 72 (168)
+|+++|++|+|||||+++|+...-. . ....+. +... .....+.....++.+|||||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4899999999999999999863110 0 000010 0111 112333445678889999999999888
Q ss_pred ccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
+...++.+|++++|+|+.+...... +.+...+.+ .++|+++++||+|+...
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~--~~~P~iivvNK~D~~~a 131 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRK--LNIPTIIFVNKIDRAGA 131 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccccCC
Confidence 8889999999999999988765433 455565555 36899999999999764
No 216
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.74 E-value=2e-17 Score=131.22 Aligned_cols=144 Identities=13% Similarity=0.069 Sum_probs=97.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCCCCCCC------------ceeece-eEEEEECCeEEEEEEEeCCCCccccccc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN--KFPTDYIP------------TVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLR 73 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~--~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 73 (168)
-+|+++|+.++|||||+.+|+.. .+...... ..+.+. .+...+....+.+.+|||||+..|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 37999999999999999999862 23221100 011222 2233445556888899999999998888
Q ss_pred cccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH---
Q 030961 74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK--- 150 (168)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 150 (168)
...++.+|++++|+|+.+...-. . ..|+..+.. .++|+++++||+|+...+.. ...++...+..
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~~q-T-~~~l~~a~~--~~ip~IVviNKiD~~~a~~~---------~v~~ei~~l~~~~g 148 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPMPQ-T-RFVLKKALE--LGLKPIVVINKIDRPSARPD---------EVVDEVFDLFAELG 148 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCcHH-H-HHHHHHHHH--CCCCEEEEEECCCCCCcCHH---------HHHHHHHHHHHhhc
Confidence 88999999999999998754322 2 456565555 36899999999998654320 11233333332
Q ss_pred ----HhCCcEEEEecccCcc
Q 030961 151 ----QIGASYYIECSSKTQQ 166 (168)
Q Consensus 151 ----~~~~~~~~~~Sa~~~~ 166 (168)
...+ +++++||++|.
T Consensus 149 ~~~e~l~~-pvl~~SA~~g~ 167 (594)
T TIGR01394 149 ADDEQLDF-PIVYASGRAGW 167 (594)
T ss_pred cccccccC-cEEechhhcCc
Confidence 2234 78999999985
No 217
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.74 E-value=2.8e-17 Score=116.41 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=74.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-----------------------eeeceeEE--------------EEEC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPT-----------------------VFDNFSAN--------------VVAE 52 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~-----------------------~~~~~~~~--------------~~~~ 52 (168)
|++++|+.++|||||+.+|..+.+....... .+.+.... ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999976553211100 00000000 0011
Q ss_pred CeEEEEEEEeCCCCccccccccccc--cCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 53 GTTVNLGLWDTAGQEDYNRLRPLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
.....+.++||||++.|.......+ ..+|++++|+|+..+..-.. ..++..+.. .++|++++.||+|+.+.
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~--~~ip~ivvvNK~D~~~~ 153 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALA--LNIPVFVVVTKIDLAPA 153 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCEEEEEECccccCH
Confidence 1235678899999988865433334 36899999999877654332 455555555 35899999999998654
No 218
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.74 E-value=2.6e-17 Score=111.13 Aligned_cols=144 Identities=17% Similarity=0.065 Sum_probs=85.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeE-EEEECCeEEEEEEEeCCCCcc----------cccccccccc
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQED----------YNRLRPLSYR 78 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~ 78 (168)
.|+++|.+|+|||||++.+.+..+.....++.+..... ....++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 37999999999999999999665544444444333222 222222 788899999533 2222222332
Q ss_pred ---CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH-HhCC
Q 030961 79 ---GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-QIGA 154 (168)
Q Consensus 79 ---~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 154 (168)
.++.+++++|..+..+... ....+.+.. .+.|+++++||+|+..... ............. ....
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~--~~~~vi~v~nK~D~~~~~~--------~~~~~~~~~~~l~~~~~~ 145 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEID--LEMLDWLEE--LGIPFLVVLTKADKLKKSE--------LAKALKEIKKELKLFEID 145 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhH--HHHHHHHHH--cCCCEEEEEEchhcCChHH--------HHHHHHHHHHHHHhccCC
Confidence 4678899999876532222 122233333 2489999999999854321 0011222222222 2333
Q ss_pred cEEEEecccCccCC
Q 030961 155 SYYIECSSKTQQVC 168 (168)
Q Consensus 155 ~~~~~~Sa~~~~~i 168 (168)
.+++++||+++.|+
T Consensus 146 ~~~~~~Sa~~~~~~ 159 (170)
T cd01876 146 PPIILFSSLKGQGI 159 (170)
T ss_pred CceEEEecCCCCCH
Confidence 47899999999874
No 219
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.74 E-value=3.9e-17 Score=124.72 Aligned_cols=151 Identities=19% Similarity=0.145 Sum_probs=96.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC-------CCC--CCCCc-----eeece-eEEEEECCeEEEEEEEeCCCCccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK-------FPT--DYIPT-----VFDNF-SANVVAEGTTVNLGLWDTAGQEDY 69 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~-------~~~--~~~~~-----~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~ 69 (168)
.++.++|+++|+.++|||||+++|++.. +.. ..+.. .+.+. ......+....++.+|||||++.|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 4678999999999999999999997420 000 00000 01111 112334445567889999999988
Q ss_pred cccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEE-EEeeCCcccccchhhhcCCCCCcccHHHHHHH
Q 030961 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 148 (168)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (168)
.......+..+|++++|+|+.++..... .+.+..+.. .++|.+ +++||+|+.+..... ....++.+.+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt--~e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~~~-------~~~~~~i~~~ 157 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMVDDEELL-------ELVEMEVREL 157 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCEEEEEEEecccCCHHHHH-------HHHHHHHHHH
Confidence 6655556678999999999987433322 233344443 256755 689999987532200 0223467777
Q ss_pred HHHhCC----cEEEEecccCcc
Q 030961 149 RKQIGA----SYYIECSSKTQQ 166 (168)
Q Consensus 149 ~~~~~~----~~~~~~Sa~~~~ 166 (168)
+..++. .+++++||.+|.
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHhcCCCccCccEEECcccccc
Confidence 777763 489999999875
No 220
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.73 E-value=8.2e-17 Score=116.78 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=79.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCC--------CCCcee----------ece-eEEEEECCeEEEEEEEeCCCCc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNK--FPTD--------YIPTVF----------DNF-SANVVAEGTTVNLGLWDTAGQE 67 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~--~~~~--------~~~~~~----------~~~-~~~~~~~~~~~~~~i~D~~g~~ 67 (168)
-+|+++|++|+|||||+++++... .... ...+.. ..+ .....+....+++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999997521 1100 000110 011 1123455667888999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
.|.......++.+|++++|+|++++..... +.+...... .++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~--~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRL--RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHh--cCCCEEEEEECCccCCC
Confidence 887766777899999999999987654332 344444433 36899999999998655
No 221
>PRK12735 elongation factor Tu; Reviewed
Probab=99.73 E-value=4e-17 Score=124.63 Aligned_cols=152 Identities=18% Similarity=0.149 Sum_probs=97.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC-------CCCC--CCCCce-----eecee-EEEEECCeEEEEEEEeCCCCccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSN-------KFPT--DYIPTV-----FDNFS-ANVVAEGTTVNLGLWDTAGQEDY 69 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~-------~~~~--~~~~~~-----~~~~~-~~~~~~~~~~~~~i~D~~g~~~~ 69 (168)
.++.++|+++|++++|||||+++|++. .+.. ..+.+. +.+.. ..........++.++||||++.|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 457889999999999999999999862 1100 000000 11111 11223334557788999999887
Q ss_pred cccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEE-EEeeCCcccccchhhhcCCCCCcccHHHHHHH
Q 030961 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 148 (168)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (168)
.......+..+|++++|+|+.+...-.. .+++..+.. .++|.+ +++||+|+..... ......++.+.+
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~qt--~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~-------~~~~~~~ei~~~ 157 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMVDDEE-------LLELVEMEVREL 157 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEEEecCCcchHH-------HHHHHHHHHHHH
Confidence 6655666789999999999987543322 334444443 357865 5799999964321 001233456667
Q ss_pred HHHhCC----cEEEEecccCccC
Q 030961 149 RKQIGA----SYYIECSSKTQQV 167 (168)
Q Consensus 149 ~~~~~~----~~~~~~Sa~~~~~ 167 (168)
...++. .+++++||++|.|
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 158 LSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHHcCCCcCceeEEecchhcccc
Confidence 766653 4799999999865
No 222
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2.2e-17 Score=108.25 Aligned_cols=117 Identities=21% Similarity=0.331 Sum_probs=92.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
+.=|++++|..|+|||||++.|.+++. ..+.||.--. +..+.+.+ .+++.+|.+|+...+..|..++..+|++++.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPT-SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPT-SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCC-hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 345899999999999999999988876 3445554222 22334444 4556699999999999999999999999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCccccc
Q 030961 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLRED 127 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~ 127 (168)
+|+.|.+.|.+.+.++-..+.... .+.|+++++||+|...+
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc
Confidence 999999999998555555544443 68999999999999876
No 223
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.73 E-value=4.2e-17 Score=123.06 Aligned_cols=140 Identities=23% Similarity=0.243 Sum_probs=96.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeceeEEEEECCeEEEEEEEeCCCCcccccccc--------c
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP--------L 75 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--------~ 75 (168)
+..+|++++|.||+|||||+|.|.+... .+.-..|..+-....+.++|.. +.+.||.|..+-....+ .
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHHHHH
Confidence 3478999999999999999999998764 3444455555556667777654 55599999765433322 2
Q ss_pred cccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCc
Q 030961 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (168)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (168)
.+++||.+++|+|++.+.+-... ..+. ....+.|+++|.||.|+..... ........+.
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~---------------~~~~~~~~~~- 351 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIE---------------LESEKLANGD- 351 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhcccccc---------------cchhhccCCC-
Confidence 36789999999999986433332 2233 2235799999999999987642 1111111222
Q ss_pred EEEEecccCccCC
Q 030961 156 YYIECSSKTQQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~~~~i 168 (168)
+++.+||++|+|+
T Consensus 352 ~~i~iSa~t~~Gl 364 (454)
T COG0486 352 AIISISAKTGEGL 364 (454)
T ss_pred ceEEEEecCccCH
Confidence 6899999999885
No 224
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.73 E-value=2.3e-16 Score=114.96 Aligned_cols=142 Identities=15% Similarity=0.108 Sum_probs=89.1
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC----------CCCceeece-eEEEEECCeEEEEEEEeCCCCccc------
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTD----------YIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY------ 69 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~------ 69 (168)
..++|+++|.+|+|||||+|+|++..+... ..+|..... ...+..++..+.+.+|||||....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 368999999999999999999999876433 233333332 334556778899999999994221
Q ss_pred --------------------ccccccccc--CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 70 --------------------NRLRPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 70 --------------------~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
.......+. .+|+++++++.+.. .+.....++++.+.. .+|+++|+||+|+...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~~---~v~vi~VinK~D~l~~ 158 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLSK---RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHhc---cCCEEEEEECCCcCCH
Confidence 111112233 46778888876541 222211344555543 5899999999999653
Q ss_pred chhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
... ........+.+..+++ ++|...
T Consensus 159 ~e~--------~~~k~~i~~~l~~~~i-~~~~~~ 183 (276)
T cd01850 159 EEL--------KEFKQRIMEDIEEHNI-KIYKFP 183 (276)
T ss_pred HHH--------HHHHHHHHHHHHHcCC-ceECCC
Confidence 220 0334556666666776 555543
No 225
>CHL00071 tufA elongation factor Tu
Probab=99.73 E-value=5.2e-17 Score=124.51 Aligned_cols=152 Identities=20% Similarity=0.142 Sum_probs=98.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCC------C----------CCCceeeceeEEEEECCeEEEEEEEeCCCCcc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT------D----------YIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 68 (168)
+.+.++|+++|++++|||||+++|++..-.. . .....+.+. ..........++.+.||||+..
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~-~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINT-AHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEc-cEEEEccCCeEEEEEECCChHH
Confidence 4678999999999999999999998642100 0 001111111 1112233445677899999987
Q ss_pred ccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCc-EEEEeeCCcccccchhhhcCCCCCcccHHHHHH
Q 030961 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (168)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (168)
|.......+..+|++++|+|+.....-.. .+.+..+.. .++| ++++.||+|+..... . .....+++..
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~~qt--~~~~~~~~~--~g~~~iIvvvNK~D~~~~~~-~------~~~~~~~l~~ 156 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMPQT--KEHILLAKQ--VGVPNIVVFLNKEDQVDDEE-L------LELVELEVRE 156 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCEEEEEEEccCCCCHHH-H------HHHHHHHHHH
Confidence 76666667789999999999886543322 344444444 3578 778999999975322 0 0023345666
Q ss_pred HHHHhCC----cEEEEecccCccCC
Q 030961 148 LRKQIGA----SYYIECSSKTQQVC 168 (168)
Q Consensus 148 ~~~~~~~----~~~~~~Sa~~~~~i 168 (168)
+....+. .+++++||.+|.|+
T Consensus 157 ~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 157 LLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHHhCCCCCcceEEEcchhhcccc
Confidence 6666553 58999999999763
No 226
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.72 E-value=1.6e-16 Score=114.38 Aligned_cols=146 Identities=17% Similarity=0.167 Sum_probs=100.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccc----ccccccc---ccCCc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----NRLRPLS---YRGAD 81 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~~---~~~~~ 81 (168)
..+.+||-|++|||||++.+...+-..-..+-.+..-.....-.+...++.+-|.||.-+- +.+-..+ +..|+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 3578999999999999999998875332222222221222222233445888999995432 2233333 45799
Q ss_pred EEEEEEeCCCh---hHHHHHHHhHHHHHchhC---CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCc
Q 030961 82 VFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (168)
Q Consensus 82 ~~i~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (168)
.++||+|.+.+ ..++.+ +.+..++..+. .+.|.+||+||+|+.+.. ...++++++.+.-.
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-------------~~~l~~L~~~lq~~ 342 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEAE-------------KNLLSSLAKRLQNP 342 (366)
T ss_pred eEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhHH-------------HHHHHHHHHHcCCC
Confidence 99999999987 666665 55555555543 689999999999996432 23357888888876
Q ss_pred EEEEecccCccCC
Q 030961 156 YYIECSSKTQQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~~~~i 168 (168)
+++++||++++|+
T Consensus 343 ~V~pvsA~~~egl 355 (366)
T KOG1489|consen 343 HVVPVSAKSGEGL 355 (366)
T ss_pred cEEEeeeccccch
Confidence 7999999999874
No 227
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.5e-16 Score=124.70 Aligned_cols=141 Identities=17% Similarity=0.188 Sum_probs=106.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeE-EEEECCeEEEEEEEeCCCCcccccccccc------c--c
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLS------Y--R 78 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~------~--~ 78 (168)
.++++++|+||+|||||+|++.+.+....+.|-.+.+.+. .....+.. +++.|+||...+....... + .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 4569999999999999999999998877778877766533 34444444 6779999987765543332 2 3
Q ss_pred CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
.+|+++.|+|++|-+.--.+ .+ ++.+ -+.|++++.|++|..+.+. ..-+.+++.+.+|+ +.+
T Consensus 81 ~~D~ivnVvDAtnLeRnLyl---tl-QLlE--~g~p~ilaLNm~D~A~~~G-----------i~ID~~~L~~~LGv-PVv 142 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYL---TL-QLLE--LGIPMILALNMIDEAKKRG-----------IRIDIEKLSKLLGV-PVV 142 (653)
T ss_pred CCCEEEEEcccchHHHHHHH---HH-HHHH--cCCCeEEEeccHhhHHhcC-----------CcccHHHHHHHhCC-CEE
Confidence 57999999999886644332 22 2333 3689999999999987653 34556788889998 999
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|+|+
T Consensus 143 ~tvA~~g~G~ 152 (653)
T COG0370 143 PTVAKRGEGL 152 (653)
T ss_pred EEEeecCCCH
Confidence 9999999984
No 228
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.72 E-value=5e-17 Score=124.48 Aligned_cols=155 Identities=16% Similarity=0.071 Sum_probs=92.8
Q ss_pred CCcceeeEEEEECCCCCCHHHHHHHHhcCCCC---CC--CCCceeece-----------------eEEEEEC--C----e
Q 030961 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFP---TD--YIPTVFDNF-----------------SANVVAE--G----T 54 (168)
Q Consensus 3 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~---~~--~~~~~~~~~-----------------~~~~~~~--~----~ 54 (168)
....+.++|+++|+.++|||||+.+|.+.... .+ ...|+...+ ......+ + .
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 44667899999999999999999988653111 10 011111111 0000011 0 1
Q ss_pred EEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChh-HHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhc
Q 030961 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 133 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~ 133 (168)
...+.+|||||++.|.......+..+|++++|+|++++. .-.. ...+..+... ...|+++++||+|+.+....
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t--~~~l~~l~~~-~i~~iiVVlNK~Dl~~~~~~--- 157 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT--KEHLMALDII-GIKNIVIVQNKIDLVSKERA--- 157 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH--HHHHHHHHHc-CCCcEEEEEEeeccccchhH---
Confidence 367889999999887665555566789999999998643 1211 1122222221 22478999999999754320
Q ss_pred CCCCCcccHHHHHHHHHHh--CCcEEEEecccCccCC
Q 030961 134 HPGLVPVTTAQGEELRKQI--GASYYIECSSKTQQVC 168 (168)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i 168 (168)
....++...+...+ ...+++++||++|+|+
T Consensus 158 -----~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI 189 (411)
T PRK04000 158 -----LENYEQIKEFVKGTVAENAPIIPVSALHKVNI 189 (411)
T ss_pred -----HHHHHHHHHHhccccCCCCeEEEEECCCCcCH
Confidence 01123444444332 1238999999999985
No 229
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.72 E-value=1.3e-17 Score=113.31 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=76.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEE-CCeEEEEEEEeCCCCccccccccc---cccCCcEE
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPL---SYRGADVF 83 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~~~~ 83 (168)
...|+++|++|+|||+|+.+|..+......... .. .....+ ......+.++|+||+++++..... ++..+.++
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~--n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-EN--NIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SE--EEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cC--CceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 457999999999999999999998553322222 11 111112 233445778999999998864333 47789999
Q ss_pred EEEEeCCC-hhHHHHHHHhHHHHHchhC---CCCcEEEEeeCCccccc
Q 030961 84 VLAFSLVS-RASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLRED 127 (168)
Q Consensus 84 i~v~d~~~-~~s~~~~~~~~~~~l~~~~---~~~p~ivv~nK~D~~~~ 127 (168)
|||+|.+. +..+..+.+.++..|.... ..+|++|++||.|+...
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 99999874 5567777677777766544 57899999999999865
No 230
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.71 E-value=2.6e-16 Score=111.10 Aligned_cols=112 Identities=17% Similarity=0.150 Sum_probs=78.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCCCCce------------eece--e-EEEEEC--------CeEEEEEEEeCC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTV------------FDNF--S-ANVVAE--------GTTVNLGLWDTA 64 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~--~~~~~~~~~------------~~~~--~-~~~~~~--------~~~~~~~i~D~~ 64 (168)
+|+++|+.++|||||+.+|+... ......... +... . ...... +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 68999999999999999997532 111000000 0000 0 011122 447889999999
Q ss_pred CCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccc
Q 030961 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125 (168)
Q Consensus 65 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~ 125 (168)
|+..|.......++.+|++++|+|+.++.+... +..+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t--~~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT--ETVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECCCcc
Confidence 999999888889999999999999998776654 333333333 358999999999986
No 231
>PRK12736 elongation factor Tu; Reviewed
Probab=99.71 E-value=1.4e-16 Score=121.54 Aligned_cols=151 Identities=19% Similarity=0.151 Sum_probs=95.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCC---------CCCC-----ceeecee-EEEEECCeEEEEEEEeCCCCccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT---------DYIP-----TVFDNFS-ANVVAEGTTVNLGLWDTAGQEDY 69 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~---------~~~~-----~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~ 69 (168)
.++.++|+++|+.++|||||+.+|++..... ..+. ..+.+.. ...........+.++||||++.|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 4567899999999999999999998631100 0000 0011111 12223334567788999999888
Q ss_pred cccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCc-EEEEeeCCcccccchhhhcCCCCCcccHHHHHHH
Q 030961 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 148 (168)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (168)
.......+..+|++++|+|+.++..-.. .+++..+.. .++| +++++||+|+..... . .....++...+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t--~~~~~~~~~--~g~~~~IvviNK~D~~~~~~-~------~~~i~~~i~~~ 157 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQT--REHILLARQ--VGVPYLVVFLNKVDLVDDEE-L------LELVEMEVREL 157 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCEEEEEEEecCCcchHH-H------HHHHHHHHHHH
Confidence 6655566778999999999987533322 334444444 3577 678899999864322 0 00123456666
Q ss_pred HHHhCC----cEEEEecccCcc
Q 030961 149 RKQIGA----SYYIECSSKTQQ 166 (168)
Q Consensus 149 ~~~~~~----~~~~~~Sa~~~~ 166 (168)
....++ .+++++||++|.
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 158 LSEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred HHHhCCCcCCccEEEeeccccc
Confidence 666653 489999999983
No 232
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.69 E-value=2.1e-16 Score=114.75 Aligned_cols=143 Identities=15% Similarity=0.007 Sum_probs=89.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC---CCCCce-----------eece-eEEEEECCeEEEEEEEeCCCCcccccc
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNK--FPT---DYIPTV-----------FDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL 72 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~--~~~---~~~~~~-----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 72 (168)
+|+++|++++|||||+++|+... ... ....+. +... .....+.....++.+|||||...+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 48999999999999999997421 100 000000 0111 111122334567888999999888888
Q ss_pred ccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHh
Q 030961 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 152 (168)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (168)
+...++.+|++++|+|+.+...-.. ..++..+.. .++|+++++||+|+...+. ....++.+......
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~--~~~p~ivviNK~D~~~a~~---------~~~~~~l~~~l~~~ 147 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADR--YNVPRIAFVNKMDRTGADF---------FRVVEQIREKLGAN 147 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECCCCCCCCH---------HHHHHHHHHHhCCC
Confidence 8888999999999999987654332 344444444 3689999999999875421 01223333333323
Q ss_pred CCcEEEEecccCc
Q 030961 153 GASYYIECSSKTQ 165 (168)
Q Consensus 153 ~~~~~~~~Sa~~~ 165 (168)
.....+++|+..+
T Consensus 148 ~~~~~~Pisa~~~ 160 (270)
T cd01886 148 PVPLQLPIGEEDD 160 (270)
T ss_pred ceEEEeccccCCC
Confidence 3334677888644
No 233
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=3.5e-16 Score=113.87 Aligned_cols=141 Identities=19% Similarity=0.164 Sum_probs=88.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC-----CCc-eee----------ce-eEEEEECCeEEEEEEEeCCCCcccccc
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDY-----IPT-VFD----------NF-SANVVAEGTTVNLGLWDTAGQEDYNRL 72 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~-----~~~-~~~----------~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 72 (168)
+|+++|++|+|||||+++++...-.... ..+ ..+ .. .....+....+.+.+|||||...+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 4899999999999999999753211000 001 000 00 011122334567888999999887777
Q ss_pred ccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHh
Q 030961 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 152 (168)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (168)
+...++.+|++++|+|+++....... ..+..+.. .++|.++++||+|+.... ..+....+...+
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~--~~~~~~~~--~~~p~iivvNK~D~~~~~------------~~~~~~~l~~~~ 144 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE--KLWEFADE--AGIPRIIFINKMDRERAD------------FDKTLAALQEAF 144 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECCccCCCC------------HHHHHHHHHHHh
Confidence 77889999999999999887655432 23333333 368999999999987652 233344555555
Q ss_pred CCcEEE--EecccCccC
Q 030961 153 GASYYI--ECSSKTQQV 167 (168)
Q Consensus 153 ~~~~~~--~~Sa~~~~~ 167 (168)
+. +++ .+...+|.|
T Consensus 145 ~~-~~~~~~ip~~~~~~ 160 (268)
T cd04170 145 GR-PVVPLQLPIGEGDD 160 (268)
T ss_pred CC-CeEEEEecccCCCc
Confidence 55 333 344555544
No 234
>PLN03126 Elongation factor Tu; Provisional
Probab=99.69 E-value=2.3e-16 Score=122.37 Aligned_cols=152 Identities=20% Similarity=0.146 Sum_probs=98.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC------CCCCC---CCc-----eeecee-EEEEECCeEEEEEEEeCCCCccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK------FPTDY---IPT-----VFDNFS-ANVVAEGTTVNLGLWDTAGQEDY 69 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~------~~~~~---~~~-----~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~ 69 (168)
+.+.++|+++|+.++|||||+++|+... ....+ +.+ .+.... ...........+.++|+||++.|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 4568899999999999999999998521 11100 000 011111 11122334457788999999988
Q ss_pred cccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCc-EEEEeeCCcccccchhhhcCCCCCcccHHHHHHH
Q 030961 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 148 (168)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (168)
.......+..+|++++|+|+.+...-.. .+++..+.. .++| ++++.||+|+.+.... .....++...+
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~-------~~~i~~~i~~~ 226 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQ--VGVPNMVVFLNKQDQVDDEEL-------LELVELEVREL 226 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCeEEEEEecccccCHHHH-------HHHHHHHHHHH
Confidence 7766667788999999999987654433 344555544 3577 7789999999753220 01223455666
Q ss_pred HHHhC----CcEEEEecccCccC
Q 030961 149 RKQIG----ASYYIECSSKTQQV 167 (168)
Q Consensus 149 ~~~~~----~~~~~~~Sa~~~~~ 167 (168)
....+ ..+++++||.+|.|
T Consensus 227 l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 227 LSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHhcCCCcCcceEEEEEcccccc
Confidence 65543 24799999999864
No 235
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.69 E-value=2.2e-16 Score=120.95 Aligned_cols=151 Identities=17% Similarity=0.099 Sum_probs=91.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCCC----------CCc---------e----------eeceeE-EEEECCeEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNK--FPTDY----------IPT---------V----------FDNFSA-NVVAEGTTV 56 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~--~~~~~----------~~~---------~----------~~~~~~-~~~~~~~~~ 56 (168)
++|+++|+.++|||||+.+|+... ..... ..+ . +..... .........
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999997432 11100 000 0 000100 111223345
Q ss_pred EEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCC
Q 030961 57 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG 136 (168)
Q Consensus 57 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 136 (168)
++.++||||++.|.......+..+|++++|+|+..+..-.. .+....+... ...++++++||+|+...+...
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt--~~~~~~~~~~-~~~~iivviNK~D~~~~~~~~----- 152 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT--RRHSYIASLL-GIRHVVLAVNKMDLVDYDEEV----- 152 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc--HHHHHHHHHc-CCCcEEEEEEecccccchHHH-----
Confidence 78899999998886655567889999999999876643322 2222222222 134688999999997432100
Q ss_pred CCcccHHHHHHHHHHhCC--cEEEEecccCccCC
Q 030961 137 LVPVTTAQGEELRKQIGA--SYYIECSSKTQQVC 168 (168)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i 168 (168)
.....++...+....+. .+++++||++|+|+
T Consensus 153 -~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni 185 (406)
T TIGR02034 153 -FENIKKDYLAFAEQLGFRDVTFIPLSALKGDNV 185 (406)
T ss_pred -HHHHHHHHHHHHHHcCCCCccEEEeecccCCCC
Confidence 00122334444454443 36999999999985
No 236
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.68 E-value=4.9e-16 Score=120.87 Aligned_cols=155 Identities=13% Similarity=0.064 Sum_probs=92.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCC----------CCce-------------------eeceeE-EEEEC
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK--FPTDY----------IPTV-------------------FDNFSA-NVVAE 52 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~--~~~~~----------~~~~-------------------~~~~~~-~~~~~ 52 (168)
.+..++|+++|+.++|||||+.+|+... ..... ..+. +..... .....
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 4567999999999999999999998542 11100 0000 000111 11123
Q ss_pred CeEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh
Q 030961 53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 132 (168)
Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~ 132 (168)
....++.++||||++.|.......+..+|++++|+|+..+..-.. .+....+... ...|+++++||+|+...+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt--~~~~~l~~~l-g~~~iIvvvNKiD~~~~~~~~- 179 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT--RRHSFIATLL-GIKHLVVAVNKMDLVDYSEEV- 179 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc--hHHHHHHHHh-CCCceEEEEEeeccccchhHH-
Confidence 345678889999998876544555789999999999876542211 1111222221 124789999999997432100
Q ss_pred cCCCCCcccHHHHHHHHHHhC---CcEEEEecccCccCC
Q 030961 133 DHPGLVPVTTAQGEELRKQIG---ASYYIECSSKTQQVC 168 (168)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i 168 (168)
.....++...+....+ ..+++++||++|+||
T Consensus 180 -----~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni 213 (474)
T PRK05124 180 -----FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNV 213 (474)
T ss_pred -----HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCc
Confidence 0011223333333333 247999999999986
No 237
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.68 E-value=2.1e-16 Score=111.74 Aligned_cols=149 Identities=21% Similarity=0.289 Sum_probs=88.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCC---CceeeceeEEEEECCeEEEEEEEeCCCCcccccc-----ccccccCCc
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYI---PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-----RPLSYRGAD 81 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~~~~~~ 81 (168)
||+++|+.+|||||+.+.++....+..+. +|.. ..+...-....+.+.+||.||+..+... ....++++.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~--ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTID--VEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----S--EEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCC--ceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence 79999999999999999888764332221 1221 1222221233457888999999766443 344578999
Q ss_pred EEEEEEeCCChh---HHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhC--CcE
Q 030961 82 VFVLAFSLVSRA---SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--ASY 156 (168)
Q Consensus 82 ~~i~v~d~~~~~---s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 156 (168)
++|+|+|+.+.+ .+... ..++..+.+.+++..+-|+.+|+|+..+..+..- .+...+...+.+...+ ...
T Consensus 79 ~LIyV~D~qs~~~~~~l~~~-~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~----~~~~~~~i~~~~~~~~~~~~~ 153 (232)
T PF04670_consen 79 VLIYVFDAQSDDYDEDLAYL-SDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEI----FRDIQQRIRDELEDLGIEDIT 153 (232)
T ss_dssp EEEEEEETT-STCHHHHHHH-HHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHH----HHHHHHHHHHHHHHTT-TSEE
T ss_pred EEEEEEEcccccHHHHHHHH-HHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHH----HHHHHHHHHHHhhhccccceE
Confidence 999999998443 33443 5666677777799999999999999765431110 0112333444444444 237
Q ss_pred EEEecccCc
Q 030961 157 YIECSSKTQ 165 (168)
Q Consensus 157 ~~~~Sa~~~ 165 (168)
|+.||...+
T Consensus 154 ~~~TSI~D~ 162 (232)
T PF04670_consen 154 FFLTSIWDE 162 (232)
T ss_dssp EEEE-TTST
T ss_pred EEeccCcCc
Confidence 888887653
No 238
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.68 E-value=3.4e-16 Score=125.89 Aligned_cols=154 Identities=16% Similarity=0.102 Sum_probs=93.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCC----------CCCce-------------------eecee-EEEEECC
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKF--PTD----------YIPTV-------------------FDNFS-ANVVAEG 53 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~--~~~----------~~~~~-------------------~~~~~-~~~~~~~ 53 (168)
...++|+++|++++|||||+++|+...- ... ...+. +.... .......
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 4578999999999999999999986421 100 00110 00000 0112223
Q ss_pred eEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhc
Q 030961 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 133 (168)
Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~ 133 (168)
...++.++||||++.|.......+..+|++++|+|+..+..-.. .+....+... ...+++|++||+|+.+.....
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t--~e~~~~~~~~-~~~~iivvvNK~D~~~~~~~~-- 176 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT--RRHSFIASLL-GIRHVVLAVNKMDLVDYDQEV-- 176 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC--HHHHHHHHHh-CCCeEEEEEEecccccchhHH--
Confidence 34567789999998876555556789999999999976543221 1222223222 235788999999996422100
Q ss_pred CCCCCcccHHHHHHHHHHhCC--cEEEEecccCccCC
Q 030961 134 HPGLVPVTTAQGEELRKQIGA--SYYIECSSKTQQVC 168 (168)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i 168 (168)
......+...+...++. .+++++||++|+|+
T Consensus 177 ----~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni 209 (632)
T PRK05506 177 ----FDEIVADYRAFAAKLGLHDVTFIPISALKGDNV 209 (632)
T ss_pred ----HHHHHHHHHHHHHHcCCCCccEEEEecccCCCc
Confidence 00122334444455554 36899999999986
No 239
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.68 E-value=9.3e-16 Score=106.85 Aligned_cols=114 Identities=17% Similarity=0.217 Sum_probs=70.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee---ceeEEEEECCeEEEEEEEeCCCCccccc-----cccccccC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD---NFSANVVAEGTTVNLGLWDTAGQEDYNR-----LRPLSYRG 79 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~ 79 (168)
.+||+++|.+|+|||||+|.+.+.........+.+. .......-......+.+||+||...... +....+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 378999999999999999999986543322222111 1010111111233678899999754322 12223567
Q ss_pred CcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
+|+++++.+ + ++......|++.+.+. ..|+++|+||+|+...
T Consensus 81 ~d~~l~v~~--~--~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 81 YDFFIIISS--T--RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLS 122 (197)
T ss_pred cCEEEEEeC--C--CCCHHHHHHHHHHHHh--CCCEEEEEecccchhh
Confidence 899888854 2 2333335667777664 5899999999999543
No 240
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.66 E-value=1e-15 Score=118.24 Aligned_cols=156 Identities=15% Similarity=0.062 Sum_probs=99.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC--CCCC----------------------CCCce-----eeceeE-EEEECCe
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK--FPTD----------------------YIPTV-----FDNFSA-NVVAEGT 54 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~--~~~~----------------------~~~~~-----~~~~~~-~~~~~~~ 54 (168)
..+.++++++|+.++|||||+-+|+... .... .+... +..... .......
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 4567899999999999999999987421 1000 00000 000100 1123445
Q ss_pred EEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHH-------HHHHhHHHHHchhCCCC-cEEEEeeCCcccc
Q 030961 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE-------NVLKKWIPELQHYSPGV-PVVLVGTKLDLRE 126 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~l~~~~~~~-p~ivv~nK~D~~~ 126 (168)
...+.++|+||++.|.......+..+|++++|+|+.+. .++ .. .+....+.. .++ ++++++||+|+..
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT-~eh~~~~~~--~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQT-REHALLAFT--LGVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchH-HHHHHHHHH--cCCCcEEEEEEcccCCc
Confidence 67888999999999988888889999999999999873 221 22 223333332 356 4788999999762
Q ss_pred cchhhhcCCCCCcccHHHHHHHHHHhCC----cEEEEecccCccCC
Q 030961 127 DKHYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQVC 168 (168)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i 168 (168)
... . ........++++.++...++ .+|+++||++|+|+
T Consensus 160 ~~~-~---~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni 201 (447)
T PLN00043 160 PKY-S---KARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNM 201 (447)
T ss_pred hhh-h---HHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccc
Confidence 110 0 00001235667777777763 47999999999986
No 241
>PRK00049 elongation factor Tu; Reviewed
Probab=99.66 E-value=2e-15 Score=115.36 Aligned_cols=151 Identities=19% Similarity=0.162 Sum_probs=95.6
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCC---CC-------------CCCceeeceeEEEEECCeEEEEEEEeCCCCcc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFP---TD-------------YIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 68 (168)
..+.++|+++|+.++|||||+++|++.... .. .....+.+. ..........++.+.||||+..
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~-~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINT-AHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEee-eEEEEcCCCeEEEEEECCCHHH
Confidence 357899999999999999999999863110 00 001111111 1222333455678899999987
Q ss_pred ccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEE-EEeeCCcccccchhhhcCCCCCcccHHHHHH
Q 030961 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (168)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (168)
|.......+..+|++++|+|+.++..-.. .+++..+.. .++|.+ ++.||+|+..... . ......+...
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~-~------~~~~~~~i~~ 156 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMVDDEE-L------LELVEMEVRE 156 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHH--cCCCEEEEEEeecCCcchHH-H------HHHHHHHHHH
Confidence 76655666789999999999987543332 344455544 357876 5899999964321 0 0012234455
Q ss_pred HHHHhCC----cEEEEecccCccC
Q 030961 148 LRKQIGA----SYYIECSSKTQQV 167 (168)
Q Consensus 148 ~~~~~~~----~~~~~~Sa~~~~~ 167 (168)
+....+. .+++++||++|.+
T Consensus 157 ~l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 157 LLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHHhcCCCccCCcEEEeecccccC
Confidence 5554433 4899999998753
No 242
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.64 E-value=3.6e-15 Score=121.04 Aligned_cols=145 Identities=15% Similarity=0.072 Sum_probs=93.4
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC--CC---CCCCCce-----------eece-eEEEEECCeEEEEEEEeCCCCc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK--FP---TDYIPTV-----------FDNF-SANVVAEGTTVNLGLWDTAGQE 67 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~--~~---~~~~~~~-----------~~~~-~~~~~~~~~~~~~~i~D~~g~~ 67 (168)
.+...+|+++|++++|||||+++|+... .. .....+. +... .....+.....++.+|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 4457799999999999999999997421 10 0000000 1111 1112223345678889999998
Q ss_pred cccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHH
Q 030961 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (168)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (168)
.+...+...++.+|++++|+|+.+...... ..++..+.+ .++|+++++||+|+..... .+....
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~--~~~~~~~~~--~~~p~ivviNK~D~~~~~~------------~~~~~~ 150 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQS--ETVWRQANR--YEVPRIAFVNKMDKTGANF------------LRVVNQ 150 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhH--HHHHHHHHH--cCCCEEEEEECCCCCCCCH------------HHHHHH
Confidence 887777888999999999999988765554 334444444 3689999999999976431 222334
Q ss_pred HHHHhCC---cEEEEecccCc
Q 030961 148 LRKQIGA---SYYIECSSKTQ 165 (168)
Q Consensus 148 ~~~~~~~---~~~~~~Sa~~~ 165 (168)
+...++. ...+++|+..+
T Consensus 151 i~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 151 IKQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred HHHHhCCCceeEEeccccCCC
Confidence 4444443 22567777665
No 243
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.64 E-value=1.1e-15 Score=97.65 Aligned_cols=105 Identities=22% Similarity=0.274 Sum_probs=67.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeece-eEEEEECCeEEEEEEEeCCCCcccc---------cccccccc
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN---------RLRPLSYR 78 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~ 78 (168)
+|+++|.+|+|||||+|.|++..... ...+..+... ...+.+++..+ .++||||-..-. ......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 68999999999999999999864321 1111111111 22334555555 579999964321 11222347
Q ss_pred CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeC
Q 030961 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121 (168)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK 121 (168)
.+|++++|+|.+++.. +. ...+++.++ .+.|+++|.||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~-~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-ED-DKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HH-HHHHHHHHH---TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HH-HHHHHHHHh---cCCCEEEEEcC
Confidence 8999999999877432 12 245555563 57899999998
No 244
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=2.2e-15 Score=102.64 Aligned_cols=146 Identities=18% Similarity=0.160 Sum_probs=93.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeE-EEEECCeEEEEEEEeCCCC----------ccccccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ----------EDYNRLR 73 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~----------~~~~~~~ 73 (168)
++...-|+++|.+|+|||||+|.+++.+--..+..|.+.+... .+.+++. +.+.|.||- +.+..+.
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence 4456789999999999999999999976323333444433322 3344443 777999992 3333444
Q ss_pred cccccC---CcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH
Q 030961 74 PLSYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 150 (168)
Q Consensus 74 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (168)
..++.. ..++++++|+..+..-.+ .++++.+.. .++|++|++||+|..+... -.......++
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~~~~D--~em~~~l~~--~~i~~~vv~tK~DKi~~~~-----------~~k~l~~v~~ 162 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPPKDLD--REMIEFLLE--LGIPVIVVLTKADKLKKSE-----------RNKQLNKVAE 162 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCeEEEEEccccCChhH-----------HHHHHHHHHH
Confidence 445443 468888999877665544 456666666 4799999999999987643 1222333333
Q ss_pred Hh----CCc-EEEEecccCccCC
Q 030961 151 QI----GAS-YYIECSSKTQQVC 168 (168)
Q Consensus 151 ~~----~~~-~~~~~Sa~~~~~i 168 (168)
.. .+. .++.+|+.++.|+
T Consensus 163 ~l~~~~~~~~~~~~~ss~~k~Gi 185 (200)
T COG0218 163 ELKKPPPDDQWVVLFSSLKKKGI 185 (200)
T ss_pred HhcCCCCccceEEEEecccccCH
Confidence 33 221 1667888888774
No 245
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.64 E-value=3.6e-15 Score=115.24 Aligned_cols=155 Identities=14% Similarity=0.056 Sum_probs=96.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC--CCCCC----------------------CCCce-----eecee-EEEEECCe
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD----------------------YIPTV-----FDNFS-ANVVAEGT 54 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~--~~~~~----------------------~~~~~-----~~~~~-~~~~~~~~ 54 (168)
+.+.++|+++|+.++|||||+.+|+.. ..... .+... +.... ........
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 356789999999999999999998752 11100 00000 00000 11223445
Q ss_pred EEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhH---H---HHHHHhHHHHHchhCCCCc-EEEEeeCCccccc
Q 030961 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS---Y---ENVLKKWIPELQHYSPGVP-VVLVGTKLDLRED 127 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~l~~~~~~~p-~ivv~nK~D~~~~ 127 (168)
...+.++|+||+.+|.......+..+|++++|+|+..+.- + ... .+.+..+.. -++| ++++.||+|....
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT-~eh~~~~~~--~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQT-REHALLAFT--LGVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccH-HHHHHHHHH--cCCCeEEEEEEccccccc
Confidence 6788899999999987777777889999999999987531 1 122 233333333 2565 6789999995321
Q ss_pred --chhhhcCCCCCcccHHHHHHHHHHhCC----cEEEEecccCccCC
Q 030961 128 --KHYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQVC 168 (168)
Q Consensus 128 --~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i 168 (168)
... ......++...+....++ .+++++||.+|+|+
T Consensus 161 ~~~~~------~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni 201 (446)
T PTZ00141 161 NYSQE------RYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNM 201 (446)
T ss_pred hhhHH------HHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCc
Confidence 110 001234455555554444 57999999999986
No 246
>PLN03127 Elongation factor Tu; Provisional
Probab=99.62 E-value=7.5e-15 Score=113.39 Aligned_cols=148 Identities=20% Similarity=0.154 Sum_probs=90.3
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC------CCC----------CCCCCceeeceeEEEEECCeEEEEEEEeCCCCcc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSN------KFP----------TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 68 (168)
..+.++|+++|+.++|||||+++|.+. ... ++..+..+.+ ...........++.++||||+..
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~-~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA-TAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee-eeEEEEcCCCeEEEEEECCCccc
Confidence 456789999999999999999999632 100 0000111111 11223344456778899999987
Q ss_pred ccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCc-EEEEeeCCcccccchhhhcCCCCCcccHHHHHH
Q 030961 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (168)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (168)
|.......+..+|++++|+|+.+...-+. .+.+..+.. .++| ++++.||+|+..... .. ....++.++
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~--~gip~iIvviNKiDlv~~~~-~~------~~i~~~i~~ 205 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQ--VGVPSLVVFLNKVDVVDDEE-LL------ELVEMELRE 205 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEEEeeccCCHHH-HH------HHHHHHHHH
Confidence 76544455677999999999877543322 344455544 3578 578899999975322 00 011223444
Q ss_pred HHHHhCC----cEEEEecccC
Q 030961 148 LRKQIGA----SYYIECSSKT 164 (168)
Q Consensus 148 ~~~~~~~----~~~~~~Sa~~ 164 (168)
+...++. .+++++||.+
T Consensus 206 ~l~~~~~~~~~vpiip~Sa~s 226 (447)
T PLN03127 206 LLSFYKFPGDEIPIIRGSALS 226 (447)
T ss_pred HHHHhCCCCCcceEEEeccce
Confidence 4443332 4788988864
No 247
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.62 E-value=3.7e-15 Score=117.03 Aligned_cols=118 Identities=13% Similarity=0.074 Sum_probs=81.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCC--CCC--C-----CCCce-----------eecee-EEEEECCeEEEEEEEeCC
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNK--FPT--D-----YIPTV-----------FDNFS-ANVVAEGTTVNLGLWDTA 64 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~--~~~--~-----~~~~~-----------~~~~~-~~~~~~~~~~~~~i~D~~ 64 (168)
.+..+|+++|++++|||||+.+|+... ... . ...+. +..+. ....+....+.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 356789999999999999999997411 100 0 00000 11111 123344456788899999
Q ss_pred CCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 65 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
|+..|.......++.+|++++|+|+++...... +.++..... .++|+++++||+|+...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~--~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT--RKLMEVCRL--RDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHH--HHHHHHHHh--cCCCEEEEEECCccccc
Confidence 999888777778899999999999987643322 344444443 47999999999998764
No 248
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.3e-14 Score=111.07 Aligned_cols=146 Identities=18% Similarity=0.205 Sum_probs=102.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEEC-CeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
.+.+-|+++|+-..|||||+..+-+......-...++...- ..+..+ +..-.+.+.||||++.|..|...-..-+|.+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 35677999999999999999999887776554555554442 233333 1334566799999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCC--------c
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA--------S 155 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 155 (168)
++|+++++.-.-+.. +-++.++. .++|++|..||+|..+.+. .....-..++|+ .
T Consensus 83 ILVVa~dDGv~pQTi--EAI~hak~--a~vP~iVAiNKiDk~~~np-------------~~v~~el~~~gl~~E~~gg~v 145 (509)
T COG0532 83 ILVVAADDGVMPQTI--EAINHAKA--AGVPIVVAINKIDKPEANP-------------DKVKQELQEYGLVPEEWGGDV 145 (509)
T ss_pred EEEEEccCCcchhHH--HHHHHHHH--CCCCEEEEEecccCCCCCH-------------HHHHHHHHHcCCCHhhcCCce
Confidence 999999885443332 11222332 5899999999999985532 222222222222 5
Q ss_pred EEEEecccCccCC
Q 030961 156 YYIECSSKTQQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~~~~i 168 (168)
.++++||++|+||
T Consensus 146 ~~VpvSA~tg~Gi 158 (509)
T COG0532 146 IFVPVSAKTGEGI 158 (509)
T ss_pred EEEEeeccCCCCH
Confidence 7899999999996
No 249
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=9.2e-15 Score=105.98 Aligned_cols=145 Identities=19% Similarity=0.181 Sum_probs=90.8
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCcc-ccc-cccc------ccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNR-LRPL------SYR 78 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~-~~~~------~~~ 78 (168)
...-|++.|.||||||||++++.+.+......|-.+-... -...+....+++++||||--. -.. +.+. .++
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~-vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIH-VGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCcccccee-EeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 3567999999999999999999998754332332111111 112344456788899999422 111 1111 122
Q ss_pred -CCcEEEEEEeCCC--hhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCc
Q 030961 79 -GADVFVLAFSLVS--RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (168)
Q Consensus 79 -~~~~~i~v~d~~~--~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (168)
-.++++|++|.+. .-+++.. ..++..+..... .|+++|.||+|...... .+++......-+..
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~------------~~~~~~~~~~~~~~ 311 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADEEK------------LEEIEASVLEEGGE 311 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccchhH------------HHHHHHHHHhhccc
Confidence 2678999999864 4567775 678888888775 89999999999986533 33344334444443
Q ss_pred EEEEecccCcc
Q 030961 156 YYIECSSKTQQ 166 (168)
Q Consensus 156 ~~~~~Sa~~~~ 166 (168)
....+++..+.
T Consensus 312 ~~~~~~~~~~~ 322 (346)
T COG1084 312 EPLKISATKGC 322 (346)
T ss_pred cccceeeeehh
Confidence 34455555543
No 250
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.60 E-value=2.6e-14 Score=105.83 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=53.9
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCC------CCCCceeeceeEE----------------EEECC-eEEEEEEEeCCCC-
Q 030961 11 CVTVGDGAVGKTCMLICYTSNKFPT------DYIPTVFDNFSAN----------------VVAEG-TTVNLGLWDTAGQ- 66 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~----------------~~~~~-~~~~~~i~D~~g~- 66 (168)
|.++|.|++|||||+++|.+..... ...|+.+..+... ...++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999999876432 1123332222100 00122 3477999999997
Q ss_pred ---cccccccccc---ccCCcEEEEEEeCC
Q 030961 67 ---EDYNRLRPLS---YRGADVFVLAFSLV 90 (168)
Q Consensus 67 ---~~~~~~~~~~---~~~~~~~i~v~d~~ 90 (168)
.+...+...+ +++||++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4444454443 78999999999986
No 251
>PRK13351 elongation factor G; Reviewed
Probab=99.60 E-value=7.2e-15 Score=119.39 Aligned_cols=119 Identities=19% Similarity=0.199 Sum_probs=83.3
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC--CC------C-----CCCCc---eeece-eEEEEECCeEEEEEEEeCCCCc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK--FP------T-----DYIPT---VFDNF-SANVVAEGTTVNLGLWDTAGQE 67 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~--~~------~-----~~~~~---~~~~~-~~~~~~~~~~~~~~i~D~~g~~ 67 (168)
.+...+|+++|+.++|||||+++|+... .. . .+.+. .+... ...........++.+|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 3457899999999999999999998531 00 0 00000 00011 1112233346788899999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
.|...+...++.+|++++|+|++++...... ..| ..+.. .++|+++++||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~--~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADR--YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHh--cCCCEEEEEECCCCCCC
Confidence 9888888899999999999999987766553 333 44443 36899999999998765
No 252
>COG2262 HflX GTPases [General function prediction only]
Probab=99.59 E-value=2.7e-14 Score=106.36 Aligned_cols=144 Identities=19% Similarity=0.111 Sum_probs=96.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeceeEEEEECCeEEEEEEEeCCCCcccc--cccccc-----
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTD--YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN--RLRPLS----- 76 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~----- 76 (168)
.....|.++|-.|+|||||+|++.+...... ...|.. .....+.+.+ +..+.+-||.|.-.-. .+...|
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLd-pttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLD-PTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeecccccccccc-CceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH
Confidence 4578899999999999999999997653322 122221 1233444554 4556679999954321 122222
Q ss_pred -ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCC
Q 030961 77 -YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 154 (168)
Q Consensus 77 -~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (168)
...+|.++.|+|++++.....+ +.....|.... .++|+++|.||+|+..+. ..........-
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~---------------~~~~~~~~~~~ 331 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDE---------------EILAELERGSP 331 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCch---------------hhhhhhhhcCC
Confidence 3579999999999999777766 66777777765 679999999999986542 11122222221
Q ss_pred cEEEEecccCccCC
Q 030961 155 SYYIECSSKTQQVC 168 (168)
Q Consensus 155 ~~~~~~Sa~~~~~i 168 (168)
..+.+||++|.|+
T Consensus 332 -~~v~iSA~~~~gl 344 (411)
T COG2262 332 -NPVFISAKTGEGL 344 (411)
T ss_pred -CeEEEEeccCcCH
Confidence 4789999999985
No 253
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.59 E-value=2.4e-14 Score=112.56 Aligned_cols=118 Identities=14% Similarity=0.074 Sum_probs=80.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc-CCC-CCC--C--C----Cce----------eece-eEEEEECCeEEEEEEEeCC
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTS-NKF-PTD--Y--I----PTV----------FDNF-SANVVAEGTTVNLGLWDTA 64 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~-~~~-~~~--~--~----~~~----------~~~~-~~~~~~~~~~~~~~i~D~~ 64 (168)
.+..+|+++|++++|||||+.+|+. ... ... - . .+. +..+ .....++...+++.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999863 211 100 0 0 011 1112 1223456667889999999
Q ss_pred CCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 65 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
|+..|.......++.+|++++|+|+++...-. .+.++..+.. .++|+++++||+|+...
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~--t~~l~~~~~~--~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETR--TRKLMEVTRL--RDTPIFTFMNKLDRDIR 147 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHH--HHHHHHHHHh--cCCCEEEEEECccccCC
Confidence 99888776667789999999999998753222 1444444433 46899999999998643
No 254
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=2.2e-14 Score=109.95 Aligned_cols=144 Identities=17% Similarity=0.173 Sum_probs=103.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
.+.+-|.+||+-..|||||+..|-+..........++... ...+..+ .+-.+.+.||||+..|..|...-..-.|.++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 4677899999999999999999988776554444444443 2233333 3355666999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH--------HhCCc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK--------QIGAS 155 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 155 (168)
+|+.+.|.-.-+.+ +.+++.. .++|++|.+||||....+. +...+-.- --|.+
T Consensus 230 LVVAadDGVmpQT~-----EaIkhAk~A~VpiVvAinKiDkp~a~p-------------ekv~~eL~~~gi~~E~~GGdV 291 (683)
T KOG1145|consen 230 LVVAADDGVMPQTL-----EAIKHAKSANVPIVVAINKIDKPGANP-------------EKVKRELLSQGIVVEDLGGDV 291 (683)
T ss_pred EEEEccCCccHhHH-----HHHHHHHhcCCCEEEEEeccCCCCCCH-------------HHHHHHHHHcCccHHHcCCce
Confidence 99998886543332 3333333 6899999999999875532 33222222 22346
Q ss_pred EEEEecccCccCC
Q 030961 156 YYIECSSKTQQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~~~~i 168 (168)
..+++||++|+|+
T Consensus 292 QvipiSAl~g~nl 304 (683)
T KOG1145|consen 292 QVIPISALTGENL 304 (683)
T ss_pred eEEEeecccCCCh
Confidence 7899999999985
No 255
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.59 E-value=3.1e-14 Score=103.75 Aligned_cols=147 Identities=19% Similarity=0.128 Sum_probs=95.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeE-EEEECCeEEEEEEEeCCCCccc----ccccccc---ccCCc
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDY----NRLRPLS---YRGAD 81 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~----~~~~~~~---~~~~~ 81 (168)
-|.+||.|++|||||++.+...+......+-.+..-.. .+.+ ...-.+.+-|.||.-+= ..+-..+ +..+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 36799999999999999999876543322221111111 1222 33445777999995432 1233333 45789
Q ss_pred EEEEEEeCCChhH---HHHHHHhHHHHHchhC---CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCc
Q 030961 82 VFVLAFSLVSRAS---YENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (168)
Q Consensus 82 ~~i~v~d~~~~~s---~~~~~~~~~~~l~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (168)
++++|+|++..+. .+.. +.+..+|.++. .+.|.+||+||+|+....+ ...+..+.+.+..++.
T Consensus 240 vL~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e----------~~~~~~~~l~~~~~~~ 308 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE----------ELEELKKALAEALGWE 308 (369)
T ss_pred eeEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCHH----------HHHHHHHHHHHhcCCC
Confidence 9999999985543 4444 67777787775 5799999999999765543 3344455555666663
Q ss_pred EEEEecccCccCC
Q 030961 156 YYIECSSKTQQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~~~~i 168 (168)
.++.+||.+++|+
T Consensus 309 ~~~~ISa~t~~g~ 321 (369)
T COG0536 309 VFYLISALTREGL 321 (369)
T ss_pred cceeeehhcccCH
Confidence 3333999998875
No 256
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=2.3e-14 Score=106.79 Aligned_cols=157 Identities=16% Similarity=0.093 Sum_probs=99.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC--CCC---------------C-------CCCce-----eecee-EEEEECCe
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK--FPT---------------D-------YIPTV-----FDNFS-ANVVAEGT 54 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~--~~~---------------~-------~~~~~-----~~~~~-~~~~~~~~ 54 (168)
..+-++++++|+..+|||||+-||+.+. +.. . .+.+- +.+.. ........
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 4567899999999999999999998641 110 0 01111 11111 11223445
Q ss_pred EEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChh---H--HHHHHHhHHHHHchhCCCCcEEEEeeCCcccccch
Q 030961 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---S--YENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s--~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~ 129 (168)
.+.+.|+|+||+..|-...-.-.++||+.++|+|+++.+ . ......+.. .|.+...-..++|+.||+|+..-++
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCCceEEEEEEcccccccCH
Confidence 577899999998877666666678999999999998763 1 111111111 2222223456889999999986443
Q ss_pred hhhcCCCCCcccHHHHHHHHHHhCC----cEEEEecccCccCC
Q 030961 130 YLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQVC 168 (168)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i 168 (168)
...+ ....+...+.+..|. ++|+++|+.+|+|+
T Consensus 163 ~rf~------ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl 199 (428)
T COG5256 163 ERFE------EIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNL 199 (428)
T ss_pred HHHH------HHHHHHHHHHHHcCCCccCCeEEecccccCCcc
Confidence 1111 334445556665555 36999999999986
No 257
>PRK00007 elongation factor G; Reviewed
Probab=99.55 E-value=6.8e-14 Score=113.61 Aligned_cols=145 Identities=16% Similarity=0.075 Sum_probs=92.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhc--CCCCC---CCC--------C---ceeece-eEEEEECCeEEEEEEEeCCCCc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTS--NKFPT---DYI--------P---TVFDNF-SANVVAEGTTVNLGLWDTAGQE 67 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~--~~~~~---~~~--------~---~~~~~~-~~~~~~~~~~~~~~i~D~~g~~ 67 (168)
.+++.+|+++|++++|||||+++|+. +.... ... + ..+... ...........++.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 45678999999999999999999974 11100 000 0 001111 1112222335678889999998
Q ss_pred cccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHH
Q 030961 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (168)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (168)
.|.......++.+|++++|+|+........ ...+..+.+ .++|+++++||+|+..... .+...+
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt--~~~~~~~~~--~~~p~iv~vNK~D~~~~~~------------~~~~~~ 150 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS--ETVWRQADK--YKVPRIAFVNKMDRTGADF------------YRVVEQ 150 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh--HHHHHHHHH--cCCCEEEEEECCCCCCCCH------------HHHHHH
Confidence 776666677889999999999887755544 344444444 3589999999999986432 223334
Q ss_pred HHHHhCC---cEEEEecccCc
Q 030961 148 LRKQIGA---SYYIECSSKTQ 165 (168)
Q Consensus 148 ~~~~~~~---~~~~~~Sa~~~ 165 (168)
+...++. ...+++|+..+
T Consensus 151 i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 151 IKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHHHhCCCeeeEEecCccCCc
Confidence 4444443 34577787765
No 258
>PRK12739 elongation factor G; Reviewed
Probab=99.55 E-value=5.8e-14 Score=114.03 Aligned_cols=117 Identities=17% Similarity=0.045 Sum_probs=80.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCC--CCC---CC-------------CCceeeceeEEEEECCeEEEEEEEeCCCCc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNK--FPT---DY-------------IPTVFDNFSANVVAEGTTVNLGLWDTAGQE 67 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~--~~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 67 (168)
.+..+|+++|++++|||||+++|+... ... .. ...++... ..........++.++||||+.
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~-~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITS-AATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccc-eeEEEEECCEEEEEEcCCCHH
Confidence 457889999999999999999997521 100 00 00111111 111222245677889999998
Q ss_pred cccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
.+...+...++.+|++++|+|+.++..... +..+..+.+ .++|+++++||+|+...
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt--~~i~~~~~~--~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS--ETVWRQADK--YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence 877777888999999999999988754443 344444444 36899999999999854
No 259
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=1.2e-13 Score=104.44 Aligned_cols=150 Identities=17% Similarity=0.141 Sum_probs=110.6
Q ss_pred CCcceeeEEEEECCCCCCHHHHHHHHhcCC--CCC-------------CCCCceeece-eEE--EEE-CCeEEEEEEEeC
Q 030961 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNK--FPT-------------DYIPTVFDNF-SAN--VVA-EGTTVNLGLWDT 63 (168)
Q Consensus 3 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~--~~~-------------~~~~~~~~~~-~~~--~~~-~~~~~~~~i~D~ 63 (168)
+..+.+-++.++-+-..|||||..|++... +.. .....++..- ..+ +.. +++.+.++++||
T Consensus 4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDT 83 (603)
T COG0481 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDT 83 (603)
T ss_pred cchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCC
Confidence 445567789999999999999999998542 111 0111111111 112 222 568899999999
Q ss_pred CCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHH
Q 030961 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA 143 (168)
Q Consensus 64 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 143 (168)
||+-.|.....+.+..|.+.++|+|++.+-..+.+ .+.+..+.. +.-++-|+||+||...+. ..
T Consensus 84 PGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTl-AN~YlAle~---~LeIiPViNKIDLP~Adp------------er 147 (603)
T COG0481 84 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALEN---NLEIIPVLNKIDLPAADP------------ER 147 (603)
T ss_pred CCccceEEEehhhHhhCCCcEEEEECccchHHHHH-HHHHHHHHc---CcEEEEeeecccCCCCCH------------HH
Confidence 99999999999999999999999999998888777 677777765 678999999999997743 33
Q ss_pred HHHHHHHHhCC--cEEEEecccCccCC
Q 030961 144 QGEELRKQIGA--SYYIECSSKTQQVC 168 (168)
Q Consensus 144 ~~~~~~~~~~~--~~~~~~Sa~~~~~i 168 (168)
-.++..+-.|+ ...+.+|||+|.||
T Consensus 148 vk~eIe~~iGid~~dav~~SAKtG~gI 174 (603)
T COG0481 148 VKQEIEDIIGIDASDAVLVSAKTGIGI 174 (603)
T ss_pred HHHHHHHHhCCCcchheeEecccCCCH
Confidence 34555555555 34689999999986
No 260
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.53 E-value=1e-13 Score=89.18 Aligned_cols=89 Identities=26% Similarity=0.329 Sum_probs=66.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC-CceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYI-PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
+|++++|..|+|||+|+.++....+...+. ++.+ +..+.....+.++.+++||
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 589999999999999999998777643322 2222 2334455677889999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccc
Q 030961 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLRE 126 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~ 126 (168)
+..++.++..+ |...+.... .+.|.++++||.|+..
T Consensus 55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEE 91 (124)
T ss_pred EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHh
Confidence 99999998753 655554433 5788999999999843
No 261
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.4e-13 Score=105.55 Aligned_cols=149 Identities=17% Similarity=0.102 Sum_probs=104.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC-CCC--------------CCCceeecee-EE-EEECCeEEEEEEEeCCCCcc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKF-PTD--------------YIPTVFDNFS-AN-VVAEGTTVNLGLWDTAGQED 68 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~-~~~--------------~~~~~~~~~~-~~-~~~~~~~~~~~i~D~~g~~~ 68 (168)
++.-++.+|-+-..|||||..|++...- ... ....++..-+ .. ...+++.+.+.++||||+-.
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 4566899999999999999999985321 010 0111111110 11 12246779999999999999
Q ss_pred ccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHH
Q 030961 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 148 (168)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (168)
|.......+.-|+++++|+|++..--.+.. ..++..++. +..+|.|+||+|+...+. .....+..++
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~-anf~lAfe~---~L~iIpVlNKIDlp~adp---------e~V~~q~~~l 204 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTV-ANFYLAFEA---GLAIIPVLNKIDLPSADP---------ERVENQLFEL 204 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHH-HHHHHHHHc---CCeEEEeeeccCCCCCCH---------HHHHHHHHHH
Confidence 999999999999999999999988777776 566666665 678999999999987753 0112222333
Q ss_pred HHHhCCcEEEEecccCccCC
Q 030961 149 RKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 149 ~~~~~~~~~~~~Sa~~~~~i 168 (168)
-.... .+.+.+||++|.|+
T Consensus 205 F~~~~-~~~i~vSAK~G~~v 223 (650)
T KOG0462|consen 205 FDIPP-AEVIYVSAKTGLNV 223 (650)
T ss_pred hcCCc-cceEEEEeccCccH
Confidence 23233 37899999999885
No 262
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.53 E-value=7.5e-15 Score=92.15 Aligned_cols=128 Identities=23% Similarity=0.163 Sum_probs=93.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCcccccccccc----ccCCcEEEE
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLS----YRGADVFVL 85 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~~~~~~i~ 85 (168)
|+++||..|+|||||++.+.+... .+..|...+|..+ ..+||||...-...|.+. ..+++++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~d~----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFNDK----------GDIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceeeccCc----------cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 799999999999999999987642 3334444444211 138999975544444333 458999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
|-+++++++.-.- .+.... ..|+|-|.+|.|+..+. ..+..+++..+-|..++|++|+.++
T Consensus 71 v~~and~~s~f~p------~f~~~~-~k~vIgvVTK~DLaed~------------dI~~~~~~L~eaGa~~IF~~s~~d~ 131 (148)
T COG4917 71 VHAANDPESRFPP------GFLDIG-VKKVIGVVTKADLAEDA------------DISLVKRWLREAGAEPIFETSAVDN 131 (148)
T ss_pred eecccCccccCCc------cccccc-ccceEEEEecccccchH------------hHHHHHHHHHHcCCcceEEEeccCc
Confidence 9999999875442 233322 34699999999998653 3567788889999989999999998
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
.||
T Consensus 132 ~gv 134 (148)
T COG4917 132 QGV 134 (148)
T ss_pred ccH
Confidence 875
No 263
>PRK09866 hypothetical protein; Provisional
Probab=99.52 E-value=1.7e-13 Score=107.81 Aligned_cols=101 Identities=15% Similarity=0.143 Sum_probs=66.2
Q ss_pred EEEEEEeCCCCccc-----cccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchh
Q 030961 56 VNLGLWDTAGQEDY-----NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 130 (168)
Q Consensus 56 ~~~~i~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~ 130 (168)
.++.+.||||-... .......+..+|+++||+|+.+..+... ..+.+.+.+.....|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~K~~PVILVVNKIDl~dree- 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVGQSVPLYVLVNKFDQQDRNS- 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcCCCCCEEEEEEcccCCCccc-
Confidence 45678999996542 2233446889999999999987655444 345555655432369999999999864321
Q ss_pred hhcCCCCCcccHHHHHHHHHHh------CCcEEEEecccCccCC
Q 030961 131 LADHPGLVPVTTAQGEELRKQI------GASYYIECSSKTQQVC 168 (168)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i 168 (168)
...+....+.... ....+|++||++|.|+
T Consensus 307 ---------ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~ni 341 (741)
T PRK09866 307 ---------DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLA 341 (741)
T ss_pred ---------chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCH
Confidence 2234444443211 2346899999999985
No 264
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.52 E-value=2.9e-13 Score=94.20 Aligned_cols=144 Identities=20% Similarity=0.202 Sum_probs=83.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC--Cceeece-eEEEEECCeEEEEEEEeCCCCccccc-----------ccc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYI--PTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR-----------LRP 74 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~ 74 (168)
++|+++|.+|+|||||+|.+++........ +..+... .......+ .++.++||||-..... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999876432211 1112111 11223333 4677899999654321 011
Q ss_pred ccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCC---CCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHH
Q 030961 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP---GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151 (168)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (168)
....++|++++|+++.+ .+-.. ...++.+.+... -.+++++.|+.|...... ..+. ........+.+.+.
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~-~~~~---~~~~~~~l~~l~~~ 151 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGT-LEDY---LENSCEALKRLLEK 151 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCc-HHHH---HHhccHHHHHHHHH
Confidence 12357899999999876 33222 445555555432 258889999999765431 0000 00012445666666
Q ss_pred hCCcEEEEecc
Q 030961 152 IGASYYIECSS 162 (168)
Q Consensus 152 ~~~~~~~~~Sa 162 (168)
.+. .|+..+.
T Consensus 152 c~~-r~~~f~~ 161 (196)
T cd01852 152 CGG-RYVAFNN 161 (196)
T ss_pred hCC-eEEEEeC
Confidence 665 4544443
No 265
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.52 E-value=1.9e-14 Score=102.21 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=81.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee--EEEEECCeEEEEEEEeCCCCcc-------cccccccc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS--ANVVAEGTTVNLGLWDTAGQED-------YNRLRPLS 76 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~ 76 (168)
...++++++|..|+|||||||.++.+...+...-..+.+.. ....+++ -.+.+||+||-.+ ++......
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 46789999999999999999999965543332222122211 1223344 4567799999654 56667777
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccc
Q 030961 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (168)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~ 128 (168)
+...|.++++.++.|+.--.. ..++..+....-+.+++++.|.+|...+.
T Consensus 115 l~~~DLvL~l~~~~draL~~d--~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~ 164 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTD--EDFLRDVIILGLDKRVLFVVTQADRAEPG 164 (296)
T ss_pred hhhccEEEEeccCCCccccCC--HHHHHHHHHhccCceeEEEEehhhhhccc
Confidence 889999999999988764433 23333444433458999999999988664
No 266
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.51 E-value=4.8e-14 Score=114.87 Aligned_cols=118 Identities=19% Similarity=0.076 Sum_probs=81.3
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC---------------CCCC---CCCceeece-eEEEEECCeEEEEEEEeCCC
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK---------------FPTD---YIPTVFDNF-SANVVAEGTTVNLGLWDTAG 65 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~---------------~~~~---~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g 65 (168)
.....+|+++|+.++|||||+.+|+... +... ...|+.... ......++..+++.+|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 3457799999999999999999997521 1000 011211111 11233567788999999999
Q ss_pred CccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccc
Q 030961 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (168)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~ 126 (168)
+..|.......++.+|++++|+|+.+....... .....+.. .+.|.++++||+|...
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~--~~~~~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE--TVLRQALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHH--HHHHHHHH--cCCCEEEEEEChhccc
Confidence 998887777889999999999999875443332 22222322 3578899999999864
No 267
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.51 E-value=2.4e-13 Score=98.61 Aligned_cols=154 Identities=18% Similarity=0.227 Sum_probs=106.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee---EEEEECCeEEEEEEEeCCCCccccccccccccC---Cc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS---ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG---AD 81 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~---~~ 81 (168)
.-.|+++|..++|||||+.+|.+.. ...+.-+..|. ..-...+...++.+|-..|......+....+.. ++
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 3479999999999999999998864 22223333332 222233446778889999987666666655543 23
Q ss_pred -EEEEEEeCCChhHHHHHHHhHHHHHchhCC-------------------------------------------------
Q 030961 82 -VFVLAFSLVSRASYENVLKKWIPELQHYSP------------------------------------------------- 111 (168)
Q Consensus 82 -~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~------------------------------------------------- 111 (168)
.+|++.|++++|.+.+..+.|...+.++..
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 678889999999877666888554433210
Q ss_pred -------------CCcEEEEeeCCccc----ccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCccCC
Q 030961 112 -------------GVPVVLVGTKLDLR----EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 112 -------------~~p~ivv~nK~D~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
.+|++||.+|||.. .+.++.++ -......++++||-++|. ..|.+|++...||
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDe---hfdfiq~~lRkFCLr~Ga-aLiyTSvKE~KNi 278 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDE---HFDFIQSHLRKFCLRYGA-ALIYTSVKETKNI 278 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHH---HHHHHHHHHHHHHHHcCc-eeEEeecccccch
Confidence 16799999999983 33222211 223566778999999999 8999999998886
No 268
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.49 E-value=1.1e-12 Score=100.03 Aligned_cols=82 Identities=21% Similarity=0.184 Sum_probs=53.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC------Cceeecee-EE--------------E-EEC-CeEEEEEEEeCCC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYI------PTVFDNFS-AN--------------V-VAE-GTTVNLGLWDTAG 65 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~------~~~~~~~~-~~--------------~-~~~-~~~~~~~i~D~~g 65 (168)
++|.++|.|++|||||+|+|.+........ |+.+.-+- .. . ..+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876543212 22221110 00 0 011 1236789999999
Q ss_pred Cc----ccccccccc---ccCCcEEEEEEeCC
Q 030961 66 QE----DYNRLRPLS---YRGADVFVLAFSLV 90 (168)
Q Consensus 66 ~~----~~~~~~~~~---~~~~~~~i~v~d~~ 90 (168)
.. ....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 333344444 78999999999986
No 269
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.49 E-value=4.6e-13 Score=97.89 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=70.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeceeEEEEECCeEEEEEEEeCCCCcccccc-------ccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-------RPL 75 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~ 75 (168)
....++|+++|.+|+||||++|++++..... ...+............ .+.++.+|||||....... ...
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~--~G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR--AGFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE--CCeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 3468899999999999999999999876421 1111111111112222 3467888999997643211 111
Q ss_pred cc--cCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCC---CCcEEEEeeCCccccc
Q 030961 76 SY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSP---GVPVVLVGTKLDLRED 127 (168)
Q Consensus 76 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~p~ivv~nK~D~~~~ 127 (168)
++ ...|++++|..++.. .+.......++.+..... -.+.+|+.|++|...+
T Consensus 113 ~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 11 268999999654321 121111334444444431 2578999999997754
No 270
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.47 E-value=1.6e-12 Score=100.39 Aligned_cols=145 Identities=23% Similarity=0.320 Sum_probs=108.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeE-EEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
.+..+.+.++|+.++|||.+++.|++..+...+..+....+.. .+...++...+.+.|.+-. ....+.... ..||++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 4678899999999999999999999998877666666666654 3455677788888888765 222232333 789999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
+++||.+++.+|... ...++..... ...|+++|++|+|+....+ ...-...++++++++.+-+..|.+
T Consensus 500 ~~~YDsS~p~sf~~~-a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q----------~~~iqpde~~~~~~i~~P~~~S~~ 567 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYL-AEVYNKYFDL-YKIPCLMVATKADLDEVPQ----------RYSIQPDEFCRQLGLPPPIHISSK 567 (625)
T ss_pred EEecccCCchHHHHH-HHHHHHhhhc-cCCceEEEeeccccchhhh----------ccCCChHHHHHhcCCCCCeeeccC
Confidence 999999999999887 4444443333 6899999999999987754 222223788999998777777776
No 271
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.46 E-value=7.4e-13 Score=96.97 Aligned_cols=155 Identities=16% Similarity=0.098 Sum_probs=103.4
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCC----------CC--CCcee-------------------eceeEEEE-EC
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT----------DY--IPTVF-------------------DNFSANVV-AE 52 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~----------~~--~~~~~-------------------~~~~~~~~-~~ 52 (168)
....++++-+|+-.-||||||-||+.+.-.. .. ..+.+ .+....+. ..
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 4567899999999999999999999763210 00 01111 11111111 12
Q ss_pred CeEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh
Q 030961 53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 132 (168)
Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~ 132 (168)
-...++.+-||||++.|...+-.-.+.||+.|+++|+...- .+. -.....+.....-..+++..||+||.+..+...
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv--l~Q-TrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV--LEQ-TRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh--HHH-hHHHHHHHHHhCCcEEEEEEeeecccccCHHHH
Confidence 34567889999999999887777788999999999984322 221 112222222223467899999999997755222
Q ss_pred cCCCCCcccHHHHHHHHHHhCC--cEEEEecccCccCC
Q 030961 133 DHPGLVPVTTAQGEELRKQIGA--SYYIECSSKTQQVC 168 (168)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i 168 (168)
+ ...++-..|+..++. ..++++||..|+||
T Consensus 160 ~------~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV 191 (431)
T COG2895 160 E------AIVADYLAFAAQLGLKDVRFIPISALLGDNV 191 (431)
T ss_pred H------HHHHHHHHHHHHcCCCcceEEechhccCCcc
Confidence 2 456667788888877 46899999999997
No 272
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.46 E-value=5.1e-13 Score=103.35 Aligned_cols=153 Identities=12% Similarity=0.098 Sum_probs=91.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC---CCCCCCC--ceeecee--EE-----------E-EEC-------------
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK---FPTDYIP--TVFDNFS--AN-----------V-VAE------------- 52 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~--~~-----------~-~~~------------- 52 (168)
....++|.++|+-..|||||+..|.+.. +..+-.. |+..-|. .. + ...
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 3567899999999999999999998632 2211111 1111110 00 0 000
Q ss_pred ---CeEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChh-HHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccc
Q 030961 53 ---GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (168)
Q Consensus 53 ---~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~ 128 (168)
.....+.++|+||++.|.......+..+|++++|+|+..+. ..+. .+.+..+... .-.+++++.||+|+....
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT--~ehl~i~~~l-gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT--SEHLAAVEIM-KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh--HHHHHHHHHc-CCCcEEEEEecccccCHH
Confidence 00246789999999988766666678999999999998742 2222 2222333222 234689999999997532
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHh--CCcEEEEecccCccCC
Q 030961 129 HYLADHPGLVPVTTAQGEELRKQI--GASYYIECSSKTQQVC 168 (168)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i 168 (168)
. . ....++.+.+.... ...+++++||++|+|+
T Consensus 188 ~-~-------~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI 221 (460)
T PTZ00327 188 Q-A-------QDQYEEIRNFVKGTIADNAPIIPISAQLKYNI 221 (460)
T ss_pred H-H-------HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCH
Confidence 2 0 01123333333221 2348999999999985
No 273
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.45 E-value=2.2e-12 Score=92.64 Aligned_cols=122 Identities=11% Similarity=0.039 Sum_probs=72.3
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeece-eEEEEECCeEEEEEEEeCCCCcccc--c-c-------
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN--R-L------- 72 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~--~-~------- 72 (168)
....++|+++|.+|+|||||+|.+++....... ....+... ......+ ...+.+|||||-.... . .
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~--g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVD--GFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--CeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 346799999999999999999999987643221 11111111 1122233 3567889999965431 1 0
Q ss_pred cccccc--CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCC---CCcEEEEeeCCcccccch
Q 030961 73 RPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSP---GVPVVLVGTKLDLREDKH 129 (168)
Q Consensus 73 ~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~p~ivv~nK~D~~~~~~ 129 (168)
...++. ..+++++|..++.. .+......+++.+..... -.++++|.||+|...+..
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~-r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMY-RRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCC-CCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 111222 57888888655432 111221344455544331 257999999999986654
No 274
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.44 E-value=1e-11 Score=90.20 Aligned_cols=87 Identities=22% Similarity=0.200 Sum_probs=56.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeceeEEEEECCeEEEEEEEeCCCCccccc-------cccccc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR-------LRPLSY 77 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~ 77 (168)
+.--.+++||.|++|||||++++.+.+-.. .|.-|.-. ...-.....+.++++.|+||--.-.+ ..-...
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~--~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLE--PVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecc--cccceEeecCceEEEEcCcccccCcccCCCCcceeeeee
Confidence 345689999999999999999999875322 22211111 11112334456777799998533222 233457
Q ss_pred cCCcEEEEEEeCCChhH
Q 030961 78 RGADVFVLAFSLVSRAS 94 (168)
Q Consensus 78 ~~~~~~i~v~d~~~~~s 94 (168)
++||.+++|+|+.....
T Consensus 139 R~ADlIiiVld~~~~~~ 155 (365)
T COG1163 139 RNADLIIIVLDVFEDPH 155 (365)
T ss_pred ccCCEEEEEEecCCChh
Confidence 89999999999986554
No 275
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=5.3e-13 Score=101.31 Aligned_cols=118 Identities=24% Similarity=0.224 Sum_probs=76.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeceeEEEEECCeEEEEEEEeCCCCcc-cccc--------ccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRL--------RPL 75 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~--------~~~ 75 (168)
..++|+++|.||+|||||+|.|.+.... ..-..|..+-....+.++| +++.+.||.|-.+ -... ...
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence 4689999999999999999999988653 3333444443444555555 5556699999644 1111 122
Q ss_pred cccCCcEEEEEEeC--CChhHHHHHHHhHHHHHchhC-------CCCcEEEEeeCCccccc
Q 030961 76 SYRGADVFVLAFSL--VSRASYENVLKKWIPELQHYS-------PGVPVVLVGTKLDLRED 127 (168)
Q Consensus 76 ~~~~~~~~i~v~d~--~~~~s~~~~~~~~~~~l~~~~-------~~~p~ivv~nK~D~~~~ 127 (168)
.+..+|++++|+|+ ++-++-..+ .+.+.....-. ...|++++.||+|+...
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i-~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKI-ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHhhcCEEEEEecccccccccchHH-HHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 35689999999998 333333332 23333333221 24789999999999865
No 276
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.41 E-value=3.6e-12 Score=98.55 Aligned_cols=156 Identities=19% Similarity=0.236 Sum_probs=104.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeE-EEEE--CCeEEEEEEEeCCCCccccccccccccC----C
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVA--EGTTVNLGLWDTAGQEDYNRLRPLSYRG----A 80 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~ 80 (168)
.-.|+|+|..++|||||+.+|.+. +...++.+.+|.- .+.- .+...++.+|-..|...+..+.+..+.. -
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhcc---CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 457999999999999999999764 2334555555532 2211 1234678999999877777766665543 2
Q ss_pred cEEEEEEeCCChhHHHHHHHhHHHHHchhC------------------------------C-------------------
Q 030961 81 DVFVLAFSLVSRASYENVLKKWIPELQHYS------------------------------P------------------- 111 (168)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~------------------------------~------------------- 111 (168)
-.+++|+|.+.||.+.+.++.|+..+.++. .
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 378889999999987755465532222210 0
Q ss_pred --------------CCcEEEEeeCCcccccchhhh-cCCCCCcccHHHHHHHHHHhCCcEEEEecccCccC
Q 030961 112 --------------GVPVVLVGTKLDLREDKHYLA-DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQV 167 (168)
Q Consensus 112 --------------~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (168)
.+|++||++|+|....-.... ..+.........++.+|-.||+ ..|.||++...|
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n 251 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKN 251 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeecccccc
Confidence 168999999999754211000 1112223566778999999999 899999988765
No 277
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=9.9e-13 Score=90.06 Aligned_cols=117 Identities=17% Similarity=0.145 Sum_probs=80.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCcccccccccccc---CCcEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR---GADVF 83 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~~~~ 83 (168)
.+-.|+++|+++||||+|+.+|..+..... .+.+... .....+.+.. ++++|.||+++.+.-...+++ .+-++
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~T-vtSiepn-~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGT-VTSIEPN-EATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccCe-eeeeccc-eeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 456799999999999999999988743221 1111111 1222333333 667999999988754444444 78899
Q ss_pred EEEEeCC-ChhHHHHHHHhHHHHHchhC---CCCcEEEEeeCCccccc
Q 030961 84 VLAFSLV-SRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLRED 127 (168)
Q Consensus 84 i~v~d~~-~~~s~~~~~~~~~~~l~~~~---~~~p~ivv~nK~D~~~~ 127 (168)
+||+|.. .......+.+.+++.+.... +.+|++|..||.|+.-.
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 9999865 34456666577777766652 67899999999998855
No 278
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.41 E-value=2.2e-12 Score=107.47 Aligned_cols=100 Identities=21% Similarity=0.243 Sum_probs=68.7
Q ss_pred CHHHHHHHHhcCCCCCCCCCceeeceeE-EEEECC----------------eEEEEEEEeCCCCccccccccccccCCcE
Q 030961 20 GKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEG----------------TTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (168)
Q Consensus 20 GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~----------------~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (168)
+||||+.++.+......-...++..... .+..+. ....+.+|||||++.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 4999999999877655444444433311 122221 01127889999999998887778888999
Q ss_pred EEEEEeCCC---hhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccc
Q 030961 83 FVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (168)
Q Consensus 83 ~i~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~ 126 (168)
+++|+|+++ +.+++.+ ..+.. .++|+++++||+|+..
T Consensus 553 vlLVVDa~~Gi~~qT~e~I-----~~lk~--~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAI-----NILRQ--YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEEECcccCCHhHHHHH-----HHHHH--cCCCEEEEEECCCCcc
Confidence 999999987 3444433 33333 3689999999999964
No 279
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.40 E-value=5.9e-12 Score=89.42 Aligned_cols=142 Identities=19% Similarity=0.126 Sum_probs=82.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
.+...|+++|.+|+|||||++.+.+..-........+. .. .......++.++||||.. .. ....++.+|++++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~---i~-i~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVll 109 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP---IT-VVTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLL 109 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc---EE-EEecCCceEEEEeCCchH--HH-HHHHHHhcCEEEE
Confidence 34567999999999999999999864211100000010 11 122345667789999853 11 1233578999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhCCCCcE-EEEeeCCcccccchhhhcCCCCCcccHHHHHH-HH-HHhCCcEEEEecc
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-LR-KQIGASYYIECSS 162 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~-ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~Sa 162 (168)
++|++....... ..++..+.. .+.|. +++.||+|+.+...... ...++++. +. ......+++.+||
T Consensus 110 viDa~~~~~~~~--~~i~~~l~~--~g~p~vi~VvnK~D~~~~~~~~~-------~~~~~l~~~~~~~~~~~~ki~~iSa 178 (225)
T cd01882 110 LIDASFGFEMET--FEFLNILQV--HGFPRVMGVLTHLDLFKKNKTLR-------KTKKRLKHRFWTEVYQGAKLFYLSG 178 (225)
T ss_pred EEecCcCCCHHH--HHHHHHHHH--cCCCeEEEEEeccccCCcHHHHH-------HHHHHHHHHHHHhhCCCCcEEEEee
Confidence 999876554333 344455544 24675 45999999864321000 11222322 22 1234458999998
Q ss_pred cCc
Q 030961 163 KTQ 165 (168)
Q Consensus 163 ~~~ 165 (168)
++.
T Consensus 179 ~~~ 181 (225)
T cd01882 179 IVH 181 (225)
T ss_pred ccC
Confidence 875
No 280
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.39 E-value=2.5e-12 Score=95.67 Aligned_cols=75 Identities=15% Similarity=0.230 Sum_probs=57.4
Q ss_pred eEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCCh----------hHHHHHHHhHHHHHchhC-CCCcEEEEeeCC
Q 030961 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYS-PGVPVVLVGTKL 122 (168)
Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~ 122 (168)
..+.+.+||++|+...+..|..++.++++++||+|+++- ..+.+....+-..+.... .+.|++|++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 356688899999999999999999999999999999873 345555333333333322 579999999999
Q ss_pred cccccc
Q 030961 123 DLREDK 128 (168)
Q Consensus 123 D~~~~~ 128 (168)
|+..+.
T Consensus 239 D~f~~k 244 (317)
T cd00066 239 DLFEEK 244 (317)
T ss_pred HHHHHh
Confidence 977653
No 281
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.38 E-value=6.2e-13 Score=102.07 Aligned_cols=149 Identities=23% Similarity=0.342 Sum_probs=117.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
..+++|+.+||..++|||+|++|++.+.|... ....+-.|++.+.+++....+.+.|.+|... ..+..++|++|
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~-e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavI 100 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQD-ESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVV 100 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccc-cCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceE
Confidence 45789999999999999999999999988655 4556667899999999999999999998543 35678899999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
|||.+.+..+|+.+ +.+...+..+. ..+|+++++++.-...... +.+...++..++..+.-..||++++
T Consensus 101 fvf~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~--------rv~~da~~r~l~~~~krcsy~et~a 171 (749)
T KOG0705|consen 101 FVFSVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISAKRP--------RVITDDRARQLSAQMKRCSYYETCA 171 (749)
T ss_pred EEEEeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhcccc--------cccchHHHHHHHHhcCccceeecch
Confidence 99999999999998 77777777554 6789999987765443322 2255666666665555558999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
.+|.++
T Consensus 172 tyGlnv 177 (749)
T KOG0705|consen 172 TYGLNV 177 (749)
T ss_pred hhhhhH
Confidence 998764
No 282
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.37 E-value=3.1e-12 Score=91.87 Aligned_cols=87 Identities=24% Similarity=0.264 Sum_probs=69.5
Q ss_pred ccccccccccccCCcEEEEEEeCCChh-HHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHH
Q 030961 67 EDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG 145 (168)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
+++..+.+.+++++|++++|||+.++. ++..+ ..|+..+.. .++|+++|+||+|+...+. +..+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vIV~NK~DL~~~~~----------~~~~~~ 90 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPIIVLNKIDLLDDED----------MEKEQL 90 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECcccCCCHH----------HHHHHH
Confidence 667778888999999999999999887 88887 888877655 5799999999999975443 333445
Q ss_pred HHHHHHhCCcEEEEecccCccCC
Q 030961 146 EELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 146 ~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
..+. ..+. +++++||++|+||
T Consensus 91 ~~~~-~~g~-~v~~~SAktg~gi 111 (245)
T TIGR00157 91 DIYR-NIGY-QVLMTSSKNQDGL 111 (245)
T ss_pred HHHH-HCCC-eEEEEecCCchhH
Confidence 5554 4676 8999999999985
No 283
>PTZ00416 elongation factor 2; Provisional
Probab=99.35 E-value=2.8e-12 Score=106.02 Aligned_cols=117 Identities=13% Similarity=0.149 Sum_probs=79.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCc-eeec-----eeE---------EEEEC--------CeEEEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPT-VFDN-----FSA---------NVVAE--------GTTVNLG 59 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~--~~~~~~~~-~~~~-----~~~---------~~~~~--------~~~~~~~ 59 (168)
.+...+|+++|+.++|||||+.+|+... .......+ ...+ ... ..... +....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 4556799999999999999999998631 11110000 0000 000 11111 2257788
Q ss_pred EEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccc
Q 030961 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125 (168)
Q Consensus 60 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~ 125 (168)
++||||+..|.......++.+|++++|+|+.++..... +..+..+.. .++|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t--~~~~~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT--ETVLRQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH--HHHHHHHHH--cCCCEEEEEEChhhh
Confidence 99999999887777888899999999999988755444 334444444 358999999999997
No 284
>PRK12740 elongation factor G; Reviewed
Probab=99.35 E-value=4.7e-12 Score=102.86 Aligned_cols=110 Identities=21% Similarity=0.172 Sum_probs=73.5
Q ss_pred ECCCCCCHHHHHHHHhcCCC--CC--CC-CC-cee----------ece-eEEEEECCeEEEEEEEeCCCCcccccccccc
Q 030961 14 VGDGAVGKTCMLICYTSNKF--PT--DY-IP-TVF----------DNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLS 76 (168)
Q Consensus 14 vG~~~~GKStli~~l~~~~~--~~--~~-~~-~~~----------~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 76 (168)
+|++++|||||+++|+...- .. .. .. +.. ... ..........+.+.+|||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 69999999999999964311 00 00 00 110 001 0111223345778889999998887777788
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
++.+|++++|+|+++....... .++..+.. .++|+++++||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~--~~~~~~~~--~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE--TVWRQAEK--YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH--HHHHHHHH--cCCCEEEEEECCCCCCC
Confidence 8999999999999887665542 33334433 36899999999998754
No 285
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.34 E-value=3.5e-12 Score=97.15 Aligned_cols=152 Identities=13% Similarity=0.008 Sum_probs=97.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccc----cccccc-----
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----NRLRPL----- 75 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~----- 75 (168)
....-.++++|-|++|||||++....+.......+..+.... -...+..-..+++.||||.-.. +...+.
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~-vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLL-VGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhh-hhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 345667999999999999999988877654332222111110 1122444567888999994321 111010
Q ss_pred cccCCcEEEEEEeCCC--hhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHH--HHHH
Q 030961 76 SYRGADVFVLAFSLVS--RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE--LRKQ 151 (168)
Q Consensus 76 ~~~~~~~~i~v~d~~~--~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 151 (168)
...-..+++++.|++. +.|.... -.++..++....+.|+|+|+||+|+-.... +..+.... ....
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~ed----------L~~~~~~ll~~~~~ 312 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPED----------LDQKNQELLQTIID 312 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCccc----------cCHHHHHHHHHHHh
Confidence 0112346777778764 5567665 577788888888999999999999988765 55444322 2233
Q ss_pred hCCcEEEEecccCccCC
Q 030961 152 IGASYYIECSSKTQQVC 168 (168)
Q Consensus 152 ~~~~~~~~~Sa~~~~~i 168 (168)
-+.++++++|+.+.+||
T Consensus 313 ~~~v~v~~tS~~~eegV 329 (620)
T KOG1490|consen 313 DGNVKVVQTSCVQEEGV 329 (620)
T ss_pred ccCceEEEecccchhce
Confidence 33348999999999886
No 286
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.33 E-value=3e-12 Score=106.00 Aligned_cols=118 Identities=11% Similarity=0.082 Sum_probs=80.7
Q ss_pred CcceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCc-e-----------eecee---EEEEE--------------C
Q 030961 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPT-V-----------FDNFS---ANVVA--------------E 52 (168)
Q Consensus 4 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~--~~~~~~~-~-----------~~~~~---~~~~~--------------~ 52 (168)
....+.+|+++|+.++|||||+.+|+...- ....... . +.... ..... .
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 355678999999999999999999985321 1100000 0 00000 01111 1
Q ss_pred CeEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccc
Q 030961 53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125 (168)
Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~ 125 (168)
+..+.+.++||||+..|.......++.+|++++|+|+..+...... ..+..+.. .++|+++++||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~--~~~~~~~~--~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE--TVLRQALG--ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH--HHHHHHHH--CCCCEEEEEECCccc
Confidence 2367788999999999988888888999999999999887655442 33333333 368999999999987
No 287
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.29 E-value=2.5e-13 Score=96.95 Aligned_cols=109 Identities=21% Similarity=0.153 Sum_probs=52.1
Q ss_pred EEEEEeCCCCccccccccccc--------cCCcEEEEEEeCC---ChhHHHHHHHhHHHHHc-hhCCCCcEEEEeeCCcc
Q 030961 57 NLGLWDTAGQEDYNRLRPLSY--------RGADVFVLAFSLV---SRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL 124 (168)
Q Consensus 57 ~~~i~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~---~~~s~~~~~~~~~~~l~-~~~~~~p~ivv~nK~D~ 124 (168)
.+.++|||||.++...+.... ...-++++++|.. ++..|-.. ++..+. ...-+.|.+.|.||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~---~L~s~s~~~~~~lP~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSS---LLLSLSIMLRLELPHVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHH---HHHHHHHHHHHTSEEEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHH---HHHHHHHHhhCCCCEEEeeeccCc
Confidence 677899999987655444432 3455888888875 44444432 222222 12247999999999999
Q ss_pred cccch--hhhcCCC----------CCcccHHHHHHHHHHhCCc-EEEEecccCccCC
Q 030961 125 REDKH--YLADHPG----------LVPVTTAQGEELRKQIGAS-YYIECSSKTQQVC 168 (168)
Q Consensus 125 ~~~~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 168 (168)
..... ......+ ...-..++..++...++.. .++++|+.+++|+
T Consensus 169 ~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~ 225 (238)
T PF03029_consen 169 LSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGM 225 (238)
T ss_dssp S-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTH
T ss_pred ccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHH
Confidence 87320 0000000 0001112223333455666 8999999999874
No 288
>PRK13768 GTPase; Provisional
Probab=99.29 E-value=6.2e-12 Score=90.78 Aligned_cols=72 Identities=21% Similarity=0.193 Sum_probs=45.4
Q ss_pred EEEEEeCCCCccc---ccccccccc---C--CcEEEEEEeCCChhHHHHH-HHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 57 NLGLWDTAGQEDY---NRLRPLSYR---G--ADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 57 ~~~i~D~~g~~~~---~~~~~~~~~---~--~~~~i~v~d~~~~~s~~~~-~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
.+.+||+||+.+. +..++.+++ . .+++++++|+......... ...|+........+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 5789999998664 333333322 2 8899999999654432221 12333332222347999999999999765
Q ss_pred c
Q 030961 128 K 128 (168)
Q Consensus 128 ~ 128 (168)
.
T Consensus 178 ~ 178 (253)
T PRK13768 178 E 178 (253)
T ss_pred h
Confidence 3
No 289
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.29 E-value=4e-11 Score=90.88 Aligned_cols=146 Identities=12% Similarity=0.077 Sum_probs=99.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCc------------eeec-eeEEEEECCeEEEEEEEeCCCCcccccc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPT------------VFDN-FSANVVAEGTTVNLGLWDTAGQEDYNRL 72 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~--~~~~~~~~------------~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 72 (168)
.-+|+++-+-..|||||+..|+.+. |.....-. -+.+ ..|...+....+.+.|.||||+..|-..
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 4579999999999999999998652 32211110 1112 2444556667788999999999999999
Q ss_pred ccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHH---
Q 030961 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR--- 149 (168)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--- 149 (168)
.+..++-+|++++++|+.....-+. .+.++.... .+.+.|||.||+|....+..+ +..+-...|.
T Consensus 85 VERvl~MVDgvlLlVDA~EGpMPQT--rFVlkKAl~--~gL~PIVVvNKiDrp~Arp~~--------Vvd~vfDLf~~L~ 152 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPMPQT--RFVLKKALA--LGLKPIVVINKIDRPDARPDE--------VVDEVFDLFVELG 152 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCCCch--hhhHHHHHH--cCCCcEEEEeCCCCCCCCHHH--------HHHHHHHHHHHhC
Confidence 9999999999999999988654443 333333222 357778888999998775411 3222222222
Q ss_pred ---HHhCCcEEEEecccCcc
Q 030961 150 ---KQIGASYYIECSSKTQQ 166 (168)
Q Consensus 150 ---~~~~~~~~~~~Sa~~~~ 166 (168)
+++.+ +++..|++.|.
T Consensus 153 A~deQLdF-PivYAS~~~G~ 171 (603)
T COG1217 153 ATDEQLDF-PIVYASARNGT 171 (603)
T ss_pred CChhhCCC-cEEEeeccCce
Confidence 24555 88999998874
No 290
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.29 E-value=1.7e-11 Score=92.01 Aligned_cols=74 Identities=15% Similarity=0.240 Sum_probs=56.7
Q ss_pred EEEEEEEeCCCCccccccccccccCCcEEEEEEeCCCh----------hHHHHHHHhHHHHHchhC-CCCcEEEEeeCCc
Q 030961 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYS-PGVPVVLVGTKLD 123 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D 123 (168)
...+.+||.+|+...+..|..++.++++++||+|+++- ..+.+....+-..+.... .+.|++|++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 35578899999999999999999999999999999862 345555333333333322 6799999999999
Q ss_pred ccccc
Q 030961 124 LREDK 128 (168)
Q Consensus 124 ~~~~~ 128 (168)
+....
T Consensus 263 ~~~~K 267 (342)
T smart00275 263 LFEEK 267 (342)
T ss_pred hHHHH
Confidence 87653
No 291
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.28 E-value=4.5e-11 Score=85.18 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=45.1
Q ss_pred EEEEEEEeCCCCc-ccccccccc-----c--cCCcEEEEEEeCC---ChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCc
Q 030961 55 TVNLGLWDTAGQE-DYNRLRPLS-----Y--RGADVFVLAFSLV---SRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123 (168)
Q Consensus 55 ~~~~~i~D~~g~~-~~~~~~~~~-----~--~~~~~~i~v~d~~---~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D 123 (168)
.....++|||||. .|.|..... + ...-++++++|.. ++.+|...+-.--..+.+ .+.|.+++.||+|
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK~D 192 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNKTD 192 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEeccc
Confidence 3567899999984 444433332 1 1345777888853 456666542111222333 5799999999999
Q ss_pred ccccc
Q 030961 124 LREDK 128 (168)
Q Consensus 124 ~~~~~ 128 (168)
+....
T Consensus 193 v~d~~ 197 (366)
T KOG1532|consen 193 VSDSE 197 (366)
T ss_pred ccccH
Confidence 98763
No 292
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.27 E-value=2.5e-12 Score=89.22 Aligned_cols=150 Identities=20% Similarity=0.243 Sum_probs=92.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC---CCCceeeceeEEEEECCeEEEEEEEeCCCCccc----c-ccccccccC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTD---YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----N-RLRPLSYRG 79 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~-~~~~~~~~~ 79 (168)
.-||+++|.+|+|||++-..++.+....+ .-+|+..++.+..... ...+.+||.+|++.+ . ......+++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG--nl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG--NLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh--hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 45899999999999999887764432111 1122333322211111 255677999999843 2 233445789
Q ss_pred CcEEEEEEeCCChhHHHHH--HHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEE
Q 030961 80 ADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 157 (168)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~--~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (168)
+++++++||+..++-..+. .+..++.+.++.|+..+.++.+|.|+.....+. .....-.+....+....++ .+
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~----~if~~r~~~l~~~s~~~~~-~~ 156 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARE----LIFQRRKEDLRRLSRPLEC-KC 156 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHH----HHHHHHHHHHHHhcccccc-cc
Confidence 9999999999887644433 255566677777888899999999998664311 0111222333444444454 67
Q ss_pred EEecccC
Q 030961 158 IECSSKT 164 (168)
Q Consensus 158 ~~~Sa~~ 164 (168)
+++|..+
T Consensus 157 f~TsiwD 163 (295)
T KOG3886|consen 157 FPTSIWD 163 (295)
T ss_pred cccchhh
Confidence 7777644
No 293
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.26 E-value=5.3e-11 Score=83.84 Aligned_cols=146 Identities=20% Similarity=0.209 Sum_probs=77.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeece-eEEEEECCeEEEEEEEeCCCCccccc--------cc---c
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDY--IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR--------LR---P 74 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~---~ 74 (168)
++|+++|..|+||||++|.+++....... ....+... ......++. .+.++||||-..... +. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~--~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGR--QVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTE--EEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecce--EEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999987643221 12222222 223355664 456699999432111 11 1
Q ss_pred ccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCC---CCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHH
Q 030961 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP---GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151 (168)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (168)
....+.|++++|+.+. +-+-.. ...++.+.+... -.-++||.|..|...+...... .........+.+.+.
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~--~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~---l~~~~~~~l~~li~~ 152 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEED--REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDY---LKKESNEALQELIEK 152 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHH--HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHH---HHHHHHHHHHHHHHH
T ss_pred hccCCCeEEEEEEecC-cchHHH--HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHH---HhccCchhHhHHhhh
Confidence 1234689999999987 333222 334444444332 1468888898887665320000 000011235566666
Q ss_pred hCCcEEEEeccc
Q 030961 152 IGASYYIECSSK 163 (168)
Q Consensus 152 ~~~~~~~~~Sa~ 163 (168)
.+. .|...+.+
T Consensus 153 c~~-R~~~f~n~ 163 (212)
T PF04548_consen 153 CGG-RYHVFNNK 163 (212)
T ss_dssp TTT-CEEECCTT
T ss_pred cCC-EEEEEecc
Confidence 766 56555444
No 294
>PTZ00258 GTP-binding protein; Provisional
Probab=99.26 E-value=2.5e-10 Score=86.49 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=53.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeE-EEEECCe---------------EEEEEEEeCCCCccc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGT---------------TVNLGLWDTAGQEDY 69 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~---------------~~~~~i~D~~g~~~~ 69 (168)
...++|.++|.||+|||||+|+|.+........|-.+..... .+.+.+. ..++.++|+||-..-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 346799999999999999999998765433323322222211 2222211 245888999995421
Q ss_pred c----ccccc---cccCCcEEEEEEeC
Q 030961 70 N----RLRPL---SYRGADVFVLAFSL 89 (168)
Q Consensus 70 ~----~~~~~---~~~~~~~~i~v~d~ 89 (168)
. .+... .++++|++++|+|+
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeC
Confidence 1 12222 35789999999997
No 295
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.25 E-value=5.4e-10 Score=83.89 Aligned_cols=82 Identities=21% Similarity=0.187 Sum_probs=51.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCe---------------EEEEEEEeCCCCcccc--
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGT---------------TVNLGLWDTAGQEDYN-- 70 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------~~~~~i~D~~g~~~~~-- 70 (168)
+++.++|.|++|||||+|++.+........|-.+.... ..+.+.+. ..++.+.|+||-..-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999987643222222221211 12222221 1358889999954311
Q ss_pred --ccccc---cccCCcEEEEEEeCC
Q 030961 71 --RLRPL---SYRGADVFVLAFSLV 90 (168)
Q Consensus 71 --~~~~~---~~~~~~~~i~v~d~~ 90 (168)
.+... .++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 12122 357899999999973
No 296
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.22 E-value=2.2e-11 Score=99.72 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=77.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCC-ce-e----------ece--e-EE--EEECCeEEEEEEEeCCCC
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIP-TV-F----------DNF--S-AN--VVAEGTTVNLGLWDTAGQ 66 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~--~~~~~~~-~~-~----------~~~--~-~~--~~~~~~~~~~~i~D~~g~ 66 (168)
++..+|+++|+.++|||||+.+|+... ....... +. . ... . .. ...++..+.+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 456789999999999999999997532 1110000 00 0 000 0 01 122445678889999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccc
Q 030961 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (168)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~ 126 (168)
..|.......++.+|++++|+|+........ +..+....+ .+.|.+++.||+|...
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t--~~~~~~~~~--~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT--ETVLRQALR--ERVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccH--HHHHHHHHH--cCCCeEEEEECchhhc
Confidence 9888777888899999999999887654433 223333222 2468899999999864
No 297
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.22 E-value=5.1e-10 Score=84.56 Aligned_cols=142 Identities=17% Similarity=0.168 Sum_probs=89.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcC----CCC-------------CCCCC---ceeec-e--eEEEE---ECCeEEEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSN----KFP-------------TDYIP---TVFDN-F--SANVV---AEGTTVNLGL 60 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~----~~~-------------~~~~~---~~~~~-~--~~~~~---~~~~~~~~~i 60 (168)
..+.|.++|+-++|||||+++|.+. ... .+..+ |.++. | .+.+. .++....+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4678999999999999999999987 322 12122 11111 2 12222 2566788899
Q ss_pred EeCCCCccccc----------c-------------------cccccc-CCcEEEEEE-eCC----ChhHHHHHHHhHHHH
Q 030961 61 WDTAGQEDYNR----------L-------------------RPLSYR-GADVFVLAF-SLV----SRASYENVLKKWIPE 105 (168)
Q Consensus 61 ~D~~g~~~~~~----------~-------------------~~~~~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~~ 105 (168)
+||+|-..--. | ....+. .++..++|. |.+ .++.+...-++++.+
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99998321100 0 111133 678888887 653 123344444788888
Q ss_pred HchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 106 LQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 106 l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
|++. ++|++++.|+.|-..+ ...+.+.++...|+. +++.+|+.
T Consensus 176 Lk~~--~kPfiivlN~~dp~~~------------et~~l~~~l~eky~v-pvl~v~c~ 218 (492)
T TIGR02836 176 LKEL--NKPFIILLNSTHPYHP------------ETEALRQELEEKYDV-PVLAMDVE 218 (492)
T ss_pred HHhc--CCCEEEEEECcCCCCc------------hhHHHHHHHHHHhCC-ceEEEEHH
Confidence 8884 6999999999994322 223444566677886 77777764
No 298
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.22 E-value=6e-10 Score=81.47 Aligned_cols=118 Identities=16% Similarity=0.190 Sum_probs=69.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCC----------CCceeece-eEEEEECCeEEEEEEEeCCCCccc------
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDY----------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY------ 69 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~------ 69 (168)
..++|+|+|.+|+|||||+|.|++....... ..+..... ...+.-++..+.+.++||||--..
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 3689999999999999999999987543321 11111221 223444678899999999992210
Q ss_pred ------------c-------ccccccc--cCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccc
Q 030961 70 ------------N-------RLRPLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (168)
Q Consensus 70 ------------~-------~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~ 128 (168)
. ....... ..+|++++.++.+. ..+..+.-..++.|.. .+++|-|+.|+|.....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~-~~L~~~Di~~mk~Ls~---~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG-HGLKPLDIEFMKRLSK---RVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS-SSS-HHHHHHHHHHTT---TSEEEEEESTGGGS-HH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC-ccchHHHHHHHHHhcc---cccEEeEEecccccCHH
Confidence 0 0000011 24789999998753 2222332345566655 57899999999986553
No 299
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.20 E-value=2.7e-10 Score=79.39 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=52.5
Q ss_pred EEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCC
Q 030961 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 135 (168)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 135 (168)
....++++.|..-.....+ .-++.+++|+|+.+.++... .+..++ ...=++++||+|+.....
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~---~~~~qi-----~~ad~~~~~k~d~~~~~~------ 154 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR---KGGPGI-----TRSDLLVINKIDLAPMVG------ 154 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh---hhHhHh-----hhccEEEEEhhhcccccc------
Confidence 4556778887432222221 12678999999987666322 111111 122378899999975311
Q ss_pred CCCcccHHHHHHHHHH-hCCcEEEEecccCccCC
Q 030961 136 GLVPVTTAQGEELRKQ-IGASYYIECSSKTQQVC 168 (168)
Q Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i 168 (168)
...+...+..+. ....+++++||++|+||
T Consensus 155 ----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi 184 (199)
T TIGR00101 155 ----ADLGVMERDAKKMRGEKPFIFTNLKTKEGL 184 (199)
T ss_pred ----ccHHHHHHHHHHhCCCCCEEEEECCCCCCH
Confidence 122333333333 23358999999999985
No 300
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.19 E-value=9e-11 Score=79.55 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=44.8
Q ss_pred EEEEeCCCCcc----ccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCC
Q 030961 58 LGLWDTAGQED----YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 122 (168)
Q Consensus 58 ~~i~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~ 122 (168)
+.++||||... ...++..++..+|++++|.++++..+-... .++.+...... ..+++|.||+
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~~--~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPDK--SRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTTC--SSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCCC--CeEEEEEcCC
Confidence 67899999643 234567778999999999999987765554 66666666543 3488888885
No 301
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.17 E-value=7.8e-11 Score=88.45 Aligned_cols=113 Identities=19% Similarity=0.265 Sum_probs=59.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCce--eeceeEEEEECCeEEEEEEEeCCCCccccc-----cccccc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTV--FDNFSANVVAEGTTVNLGLWDTAGQEDYNR-----LRPLSY 77 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~ 77 (168)
...++|+|+|.+|+|||||||.|.+-.-.+. ..++. .++...........-.+.+||.||.....- +....+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 4578999999999999999999976332211 12221 111222222223333577899999533211 222345
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcc
Q 030961 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 124 (168)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~ 124 (168)
...|.++++.+. .|......+.+.+++. +.|+.+|-+|+|.
T Consensus 113 ~~yD~fiii~s~----rf~~ndv~La~~i~~~--gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 113 YRYDFFIIISSE----RFTENDVQLAKEIQRM--GKKFYFVRTKVDS 153 (376)
T ss_dssp GG-SEEEEEESS----S--HHHHHHHHHHHHT--T-EEEEEE--HHH
T ss_pred cccCEEEEEeCC----CCchhhHHHHHHHHHc--CCcEEEEEecccc
Confidence 678888887662 2333324566667764 6899999999996
No 302
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.16 E-value=5e-10 Score=78.64 Aligned_cols=142 Identities=17% Similarity=0.090 Sum_probs=75.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC-C--CC-----CCCCCceee-cee----EEEEE-CC------------------
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSN-K--FP-----TDYIPTVFD-NFS----ANVVA-EG------------------ 53 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~-~--~~-----~~~~~~~~~-~~~----~~~~~-~~------------------ 53 (168)
.....|.++|.+|+|||||+++++.. . .. ......... .+. ..+.+ ++
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 35778999999999999999998754 1 10 000000000 000 00111 11
Q ss_pred -eEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh
Q 030961 54 -TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 132 (168)
Q Consensus 54 -~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~ 132 (168)
....+.++++.|.-... ..+....+..+.|+|+.+.+..... .... ...|.++++||+|+.....
T Consensus 100 ~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~~---~~~~-----~~~a~iiv~NK~Dl~~~~~--- 165 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPLK---YPGM-----FKEADLIVINKADLAEAVG--- 165 (207)
T ss_pred cCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhhh---hHhH-----HhhCCEEEEEHHHccccch---
Confidence 12456678887721100 1111234555678887765432111 1111 1357899999999975422
Q ss_pred cCCCCCcccHHHHHHHHHHhC-CcEEEEecccCccCC
Q 030961 133 DHPGLVPVTTAQGEELRKQIG-ASYYIECSSKTQQVC 168 (168)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i 168 (168)
...++..+..++.+ ..+++++||++|.||
T Consensus 166 -------~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv 195 (207)
T TIGR00073 166 -------FDVEKMKADAKKINPEAEIILMSLKTGEGL 195 (207)
T ss_pred -------hhHHHHHHHHHHhCCCCCEEEEECCCCCCH
Confidence 12233443343333 238999999999985
No 303
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=6.5e-10 Score=86.28 Aligned_cols=156 Identities=14% Similarity=0.075 Sum_probs=99.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC--CC------------------C----CCCCCce-----eece-eEEEEECCeE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSN--KF------------------P----TDYIPTV-----FDNF-SANVVAEGTT 55 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~--~~------------------~----~~~~~~~-----~~~~-~~~~~~~~~~ 55 (168)
..-+.++++|+-.+|||||.-+++.. .. . -..+.|. +... .+...++...
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 35788999999999999999998764 00 0 0001111 1111 1223345566
Q ss_pred EEEEEEeCCCCccccccccccccCCcEEEEEEeCCChh---HHHHH--HHhHHHHHchhCCCCcEEEEeeCCcccccchh
Q 030961 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 130 (168)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~--~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~ 130 (168)
..+.+.|.||+..|-...-.-...+|++++|+|++-.+ .|+.. ..+....++.. .-.-++|+.||.|+..=.+.
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-GISQLIVAINKMDLVSWSQD 333 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-CcceEEEEeecccccCccHH
Confidence 77889999998777766666677899999999986421 12210 12333333332 34578999999999855432
Q ss_pred hhcCCCCCcccHHHHHHHH-HHhCC----cEEEEecccCccCC
Q 030961 131 LADHPGLVPVTTAQGEELR-KQIGA----SYYIECSSKTQQVC 168 (168)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i 168 (168)
. +.........|. +..|+ +.|+++|+.+|+|.
T Consensus 334 R------F~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 334 R------FEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENL 370 (603)
T ss_pred H------HHHHHHHHHHHHHHhcCcccCCcceEecccccCCcc
Confidence 2 124555566666 55555 47999999999984
No 304
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.7e-10 Score=90.72 Aligned_cols=118 Identities=21% Similarity=0.275 Sum_probs=86.7
Q ss_pred CcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCC---CC------ceeeceeEE---------EE---ECCeEEEEEEEe
Q 030961 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY---IP------TVFDNFSAN---------VV---AEGTTVNLGLWD 62 (168)
Q Consensus 4 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~---~~------~~~~~~~~~---------~~---~~~~~~~~~i~D 62 (168)
.+....++.++|+-++|||+|...|....-..-. .. +...+.... +. ..++.+-+++.|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 4567889999999999999999999876432211 11 111110111 11 156678899999
Q ss_pred CCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccc
Q 030961 63 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125 (168)
Q Consensus 63 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~ 125 (168)
|||+-.|.......++.+|++++++|+...-++.. +.+++..-+ .+.|+++++||.|..
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt--Er~ikhaiq--~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT--ERIIKHAIQ--NRLPIVVVINKVDRL 262 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeH--HHHHHHHHh--ccCcEEEEEehhHHH
Confidence 99999999988899999999999999999888876 444444333 479999999999964
No 305
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.12 E-value=4e-10 Score=89.42 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=72.8
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccc-------c---cc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR-------L---RP 74 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~-------~---~~ 74 (168)
..++|+++|.+|+||||++|.+++.. +........+... ......++ ..+.++||||-..... + ..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 46799999999999999999999875 3332211112222 22223343 5678899999654311 1 11
Q ss_pred cccc--CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCC-C--CcEEEEeeCCccccc
Q 030961 75 LSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSP-G--VPVVLVGTKLDLRED 127 (168)
Q Consensus 75 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~-~--~p~ivv~nK~D~~~~ 127 (168)
.++. .+|++++|..++........ ..+++.+.+.+. + .-+|||.|+.|..++
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD-~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSND-LPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHH-HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 1222 57999999887533222121 456666666652 2 467899999998864
No 306
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.08 E-value=1.2e-09 Score=81.46 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=55.7
Q ss_pred EEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcC
Q 030961 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 134 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 134 (168)
++.+.++||+|.-.-... ....+|.++++.+...++.+... . ..... ..-++|.||+|+.......
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~-k---~gi~E----~aDIiVVNKaDl~~~~~a~--- 213 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGI-K---KGIME----LADLIVINKADGDNKTAAR--- 213 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHH-H---hhhhh----hhheEEeehhcccchhHHH---
Confidence 577889999996532111 35679999999775555555543 1 11111 2237899999987542100
Q ss_pred CCCCcccHHHHHHHHHHh-----CC-cEEEEecccCccCC
Q 030961 135 PGLVPVTTAQGEELRKQI-----GA-SYYIECSSKTQQVC 168 (168)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~-----~~-~~~~~~Sa~~~~~i 168 (168)
....+.+...... ++ .+++.+||+++.||
T Consensus 214 -----~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GI 248 (332)
T PRK09435 214 -----RAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGI 248 (332)
T ss_pred -----HHHHHHHHHHhcccccccCCCCCEEEEECCCCCCH
Confidence 1112222222211 12 47899999999986
No 307
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.08 E-value=1.4e-09 Score=77.60 Aligned_cols=70 Identities=20% Similarity=0.163 Sum_probs=44.9
Q ss_pred EEEEEEeCCCCccc-------------ccccccccc-CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeC
Q 030961 56 VNLGLWDTAGQEDY-------------NRLRPLSYR-GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121 (168)
Q Consensus 56 ~~~~i~D~~g~~~~-------------~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK 121 (168)
..+.++|+||-... ..+...+++ ..+.+++|+|+.....-... ..+.+.+.. ...++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~--~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDP--QGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHH--cCCcEEEEEEC
Confidence 55788999996421 123444556 34589999988654332222 244444444 46899999999
Q ss_pred Ccccccc
Q 030961 122 LDLREDK 128 (168)
Q Consensus 122 ~D~~~~~ 128 (168)
+|.....
T Consensus 202 ~D~~~~~ 208 (240)
T smart00053 202 LDLMDEG 208 (240)
T ss_pred CCCCCcc
Confidence 9997653
No 308
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.1e-09 Score=88.35 Aligned_cols=120 Identities=20% Similarity=0.111 Sum_probs=86.0
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC--CCCC---CCCCcee-----------ece-eEEEEECCe-EEEEEEEeCCCC
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPT---DYIPTVF-----------DNF-SANVVAEGT-TVNLGLWDTAGQ 66 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~--~~~~---~~~~~~~-----------~~~-~~~~~~~~~-~~~~~i~D~~g~ 66 (168)
....-+|.++|+-.+|||||.-+++.. ..+. ....+.. .+. ......... .+.++++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 556788999999999999999998742 2211 1111111 111 111223334 588889999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccc
Q 030961 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (168)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~ 128 (168)
-.|.......++-+|++++|+|+...-..+.. .-|.+. .+ .++|.+++.||+|....+
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa-~~--~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQA-DK--YGVPRILFVNKMDRLGAD 144 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHH-hh--cCCCeEEEEECccccccC
Confidence 99999999999999999999999887766653 334443 33 369999999999988664
No 309
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=2.7e-09 Score=78.58 Aligned_cols=153 Identities=16% Similarity=0.189 Sum_probs=89.9
Q ss_pred CCCCcceeeEEEEECCCCCCHHHHHHHHhcC----CCCC---CCCCceeecee-EEEE-------ECCeEEEEEEEeCCC
Q 030961 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSN----KFPT---DYIPTVFDNFS-ANVV-------AEGTTVNLGLWDTAG 65 (168)
Q Consensus 1 m~~~~~~~~~i~vvG~~~~GKStli~~l~~~----~~~~---~~~~~~~~~~~-~~~~-------~~~~~~~~~i~D~~g 65 (168)
|++.+. .+++.++|+-.||||||.+++..- .|.. +....++.+.. ..+. ..++..++.++|+||
T Consensus 1 m~~~p~-n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPG 79 (522)
T KOG0461|consen 1 MTSPPS-NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPG 79 (522)
T ss_pred CCCCCc-eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCC
Confidence 444333 489999999999999999998742 2322 22222222221 1111 256678899999999
Q ss_pred CccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHH
Q 030961 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG 145 (168)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
+..+-...-....-.|..++|+|+....--+.+ +++-.-+.. -...+||.||+|+.++..+.. -..+..
T Consensus 80 HasLIRtiiggaqiiDlm~lviDv~kG~QtQtA--EcLiig~~~--c~klvvvinkid~lpE~qr~s-------ki~k~~ 148 (522)
T KOG0461|consen 80 HASLIRTIIGGAQIIDLMILVIDVQKGKQTQTA--ECLIIGELL--CKKLVVVINKIDVLPENQRAS-------KIEKSA 148 (522)
T ss_pred cHHHHHHHHhhhheeeeeeEEEehhcccccccc--hhhhhhhhh--ccceEEEEeccccccchhhhh-------HHHHHH
Confidence 976543333344557899999999765433332 222211111 245678889999887743111 122223
Q ss_pred HHHHHHh------CCcEEEEecccCc
Q 030961 146 EELRKQI------GASYYIECSSKTQ 165 (168)
Q Consensus 146 ~~~~~~~------~~~~~~~~Sa~~~ 165 (168)
+++...+ +-.+++++||..|
T Consensus 149 kk~~KtLe~t~f~g~~PI~~vsa~~G 174 (522)
T KOG0461|consen 149 KKVRKTLESTGFDGNSPIVEVSAADG 174 (522)
T ss_pred HHHHHHHHhcCcCCCCceeEEecCCC
Confidence 3333222 2258999999998
No 310
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=2.1e-09 Score=85.71 Aligned_cols=116 Identities=19% Similarity=0.227 Sum_probs=78.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEE-------------EECC----eEEEEEEEeCCCCccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-------------VAEG----TTVNLGLWDTAGQEDY 69 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~----~~~~~~i~D~~g~~~~ 69 (168)
+.+-|+++|+-..|||-|+..+-+..........++.....++ .-++ .---+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 4667999999999999999998875443322222221111100 0011 1123567999999999
Q ss_pred cccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccc
Q 030961 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (168)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~ 126 (168)
..+.......||.+|+|+|+-.+-.-..+ +-+..|.. .+.|+||..||+|...
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqti--ESi~lLR~--rktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTI--ESINLLRM--RKTPFIVALNKIDRLY 606 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchh--HHHHHHHh--cCCCeEEeehhhhhhc
Confidence 99999999999999999998765322221 22344444 4699999999999653
No 311
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.95 E-value=3e-09 Score=70.26 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=36.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 66 (168)
+++++|.+|+|||||+|++.+............+.....+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999876532211111122233344443 4678999995
No 312
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.93 E-value=3.1e-09 Score=78.71 Aligned_cols=95 Identities=16% Similarity=0.069 Sum_probs=52.7
Q ss_pred EEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcC
Q 030961 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 134 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 134 (168)
++.+.++||+|.-.. .......+|.++++-.....+.+.. +...+ .+.|.++++||+|+.......
T Consensus 126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~~el~~----~~~~l----~~~~~ivv~NK~Dl~~~~~~~--- 191 (300)
T TIGR00750 126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTGDDLQG----IKAGL----MEIADIYVVNKADGEGATNVT--- 191 (300)
T ss_pred CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCccHHHHH----HHHHH----hhhccEEEEEcccccchhHHH---
Confidence 577889999985321 1123556788887754433333332 22323 246789999999997542100
Q ss_pred CCCCcccHH----HHHHHHHH-hCC-cEEEEecccCccCC
Q 030961 135 PGLVPVTTA----QGEELRKQ-IGA-SYYIECSSKTQQVC 168 (168)
Q Consensus 135 ~~~~~~~~~----~~~~~~~~-~~~-~~~~~~Sa~~~~~i 168 (168)
.... ....+... .++ .+++++||++++|+
T Consensus 192 -----~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi 226 (300)
T TIGR00750 192 -----IARLMLALALEEIRRREDGWRPPVLTTSAVEGRGI 226 (300)
T ss_pred -----HHHHHHHHHHhhccccccCCCCCEEEEEccCCCCH
Confidence 0000 01111111 122 25899999999985
No 313
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.3e-07 Score=70.60 Aligned_cols=83 Identities=18% Similarity=0.095 Sum_probs=53.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEE-E------------EC----CeEEEEEEEeCCCCc---
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-V------------AE----GTTVNLGLWDTAGQE--- 67 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~-~------------~~----~~~~~~~i~D~~g~~--- 67 (168)
.+++.+||.||+|||||+|.+..........|-.+.+-...+ . +. -....+.++|.+|--
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 368999999999999999999987633233332222211111 0 11 134678899999842
Q ss_pred -ccccccccc---ccCCcEEEEEEeCC
Q 030961 68 -DYNRLRPLS---YRGADVFVLAFSLV 90 (168)
Q Consensus 68 -~~~~~~~~~---~~~~~~~i~v~d~~ 90 (168)
.=..+-..+ ++++|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 223344444 57899999999853
No 314
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=1.5e-08 Score=71.18 Aligned_cols=116 Identities=17% Similarity=0.193 Sum_probs=69.3
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCce------eece---eEEEEECCeEEEEEEEeCCCCccc---ccc-
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTV------FDNF---SANVVAEGTTVNLGLWDTAGQEDY---NRL- 72 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~-~~~~~------~~~~---~~~~~~~~~~~~~~i~D~~g~~~~---~~~- 72 (168)
-.++|++||.+|.|||||+|.++..+.... ..+.. +.+. .+.+.-++...++.++||||--.. ...
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 478999999999999999999987654321 11111 1122 222334677888999999993211 111
Q ss_pred ----------------------ccccccCCcEEEEEEeC-CChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccc
Q 030961 73 ----------------------RPLSYRGADVFVLAFSL-VSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125 (168)
Q Consensus 73 ----------------------~~~~~~~~~~~i~v~d~-~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~ 125 (168)
.+..+.+..+-+++|=+ -.+.++..+.-++++.|.+. +.++-|+-|+|-.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v---vNvvPVIakaDtl 197 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV---VNVVPVIAKADTL 197 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh---heeeeeEeecccc
Confidence 12223333444444322 24566666656666666664 5677777898864
No 315
>PRK00098 GTPase RsgA; Reviewed
Probab=98.87 E-value=1e-08 Score=75.88 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=58.3
Q ss_pred cccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCc
Q 030961 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (168)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (168)
.+.++|.+++|+|+.++.......+.|+..+.. .++|+++|+||+|+..... ..++.....+..+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~-----------~~~~~~~~~~~~g~- 142 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLE-----------EARELLALYRAIGY- 142 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHH-----------HHHHHHHHHHHCCC-
Confidence 358999999999998887655544677776654 5799999999999963321 12334444556676
Q ss_pred EEEEecccCccCC
Q 030961 156 YYIECSSKTQQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~~~~i 168 (168)
+++++||++++|+
T Consensus 143 ~v~~vSA~~g~gi 155 (298)
T PRK00098 143 DVLELSAKEGEGL 155 (298)
T ss_pred eEEEEeCCCCccH
Confidence 8999999999885
No 316
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=9e-09 Score=72.38 Aligned_cols=118 Identities=15% Similarity=0.247 Sum_probs=76.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEE---EECCeEEEEEEEeCCCCccccc---cccccccCCc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV---VAEGTTVNLGLWDTAGQEDYNR---LRPLSYRGAD 81 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~ 81 (168)
+.+|+++|...+||||+....++..-+. .|...+...++ .+.+.-+.+++||.|||-.+.. -.+..++++.
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPn---eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g 103 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG 103 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCC---ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence 4679999999999999886655433211 23332222222 2334557899999999865533 2233578999
Q ss_pred EEEEEEeCCChh--HHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccch
Q 030961 82 VFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129 (168)
Q Consensus 82 ~~i~v~d~~~~~--s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~ 129 (168)
++++|+|+.+.- .+..+ ........+.++++.+-|++.|.|...+..
T Consensus 104 ALifvIDaQddy~eala~L-~~~v~raykvNp~in~EVfiHKvDGLsdd~ 152 (347)
T KOG3887|consen 104 ALIFVIDAQDDYMEALARL-HMTVERAYKVNPNINFEVFIHKVDGLSDDF 152 (347)
T ss_pred eEEEEEechHHHHHHHHHH-HHHhhheeecCCCceEEEEEEeccCCchhh
Confidence 999999976532 23333 333444444457888889999999876644
No 317
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=7.8e-09 Score=75.42 Aligned_cols=152 Identities=14% Similarity=0.105 Sum_probs=90.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC---CCCCCCCCcee-------------------eceeEEEEE------CCeEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSN---KFPTDYIPTVF-------------------DNFSANVVA------EGTTVN 57 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~---~~~~~~~~~~~-------------------~~~~~~~~~------~~~~~~ 57 (168)
...++|.++|+-..|||||+..+.+- ++.+.....++ ..|...-.. ......
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 57899999999999999999998763 11111000000 011000001 123456
Q ss_pred EEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCC
Q 030961 58 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 137 (168)
Q Consensus 58 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 137 (168)
+.+.|.||++.+-..+-+-..-.|++++|+.++.+.---.. .+.+-.+.=. .-..++|+=||+|+.......
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT-~EHl~AleIi-gik~iiIvQNKIDlV~~E~Al------ 159 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-REHLMALEII-GIKNIIIVQNKIDLVSRERAL------ 159 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCch-HHHHHHHhhh-ccceEEEEecccceecHHHHH------
Confidence 78899999987644333434456899999998864322222 1122222211 235789999999997654311
Q ss_pred CcccHHHHHHHHHH---hCCcEEEEecccCccCC
Q 030961 138 VPVTTAQGEELRKQ---IGASYYIECSSKTQQVC 168 (168)
Q Consensus 138 ~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i 168 (168)
..+++.++|.+. -+. +++++||..+.||
T Consensus 160 --E~y~qIk~FvkGt~Ae~a-PIIPiSA~~~~NI 190 (415)
T COG5257 160 --ENYEQIKEFVKGTVAENA-PIIPISAQHKANI 190 (415)
T ss_pred --HHHHHHHHHhcccccCCC-ceeeehhhhccCH
Confidence 345555555542 233 8999999998875
No 318
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.84 E-value=3.6e-09 Score=75.66 Aligned_cols=117 Identities=16% Similarity=0.051 Sum_probs=67.4
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-ceeeceeEEEEECCeEEEEEEEeCCCC----------ccccccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQ----------EDYNRLR 73 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~ 73 (168)
++..+.++++|.+++|||+|+|.+++.+....... ..+.. ..+..-...-.+.+.|.||- ..+..+.
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T--q~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT--QAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc--eeeeeeeccceEEEEecCCcccccCCccCcchHhHhH
Confidence 45678999999999999999999998765333222 11111 11111222334556999991 1223344
Q ss_pred cccccCCcE---EEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 74 PLSYRGADV---FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 74 ~~~~~~~~~---~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
..++.+.+- +++.+|++.+- ....-..++.+.+ .++|+.+|.||||....
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i--~~~D~~~i~~~ge--~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPI--QPTDNPEIAWLGE--NNVPMTSVFTKCDKQKK 263 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCC--CCCChHHHHHHhh--cCCCeEEeeehhhhhhh
Confidence 555544432 23334544332 1111223334444 46999999999998765
No 319
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.84 E-value=1.9e-08 Score=73.17 Aligned_cols=80 Identities=18% Similarity=0.091 Sum_probs=50.6
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCe---------------EEEEEEEeCCCCcccc----
Q 030961 11 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGT---------------TVNLGLWDTAGQEDYN---- 70 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------~~~~~i~D~~g~~~~~---- 70 (168)
+.++|.|++|||||+|++.+........|..+.... ..+.+.+. ..++.++|+||-..-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 578999999999999999987754333333222221 12233322 2358899999954211
Q ss_pred ccccc---cccCCcEEEEEEeCC
Q 030961 71 RLRPL---SYRGADVFVLAFSLV 90 (168)
Q Consensus 71 ~~~~~---~~~~~~~~i~v~d~~ 90 (168)
.+... .++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 12222 356899999999863
No 320
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=3.1e-08 Score=75.00 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=82.5
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc--CCCC--------------CCCCCce----eece-eEEEEECCeEEEEEEEeCCC
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS--NKFP--------------TDYIPTV----FDNF-SANVVAEGTTVNLGLWDTAG 65 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~--~~~~--------------~~~~~~~----~~~~-~~~~~~~~~~~~~~i~D~~g 65 (168)
+.-.++++-+|.+|||||.-+|+- +-.. .+..-.+ +... +.-++.+...+.+.+.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 345689999999999999998753 2110 0000001 1112 22345566778888999999
Q ss_pred CccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
++.|..-....|..+|.++.|+|+...-.-+. ..+++.+.. .++|++=++||.|....
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT--~KLfeVcrl--R~iPI~TFiNKlDR~~r 148 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT--LKLFEVCRL--RDIPIFTFINKLDREGR 148 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHH--HHHHHHHhh--cCCceEEEeeccccccC
Confidence 99998888888889999999999988765554 345554444 47999999999997644
No 321
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.81 E-value=1.8e-07 Score=69.51 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=74.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC----------CCCceeece-eEEEEECCeEEEEEEEeCCCCccc---cc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTD----------YIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY---NR 71 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~---~~ 71 (168)
...+.|+++|+.|.|||||+|.|++...... ..+++.... ...+.-++.++.+.++||||--.+ ..
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 3578999999999999999999998744322 123333333 223444788899999999993211 00
Q ss_pred cc----------------------cc-ccc--CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccc
Q 030961 72 LR----------------------PL-SYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (168)
Q Consensus 72 ~~----------------------~~-~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~ 126 (168)
.| .. .+. .+|++++.+..+ +..+..+.-+.++.+.. .+-+|-|+.|+|...
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt-gh~l~~~DIe~Mk~ls~---~vNlIPVI~KaD~lT 176 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT-GHGLKPLDIEAMKRLSK---RVNLIPVIAKADTLT 176 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC-CCCCCHHHHHHHHHHhc---ccCeeeeeeccccCC
Confidence 11 00 111 367777777643 33344443455566655 467888889999865
Q ss_pred cc
Q 030961 127 DK 128 (168)
Q Consensus 127 ~~ 128 (168)
..
T Consensus 177 ~~ 178 (373)
T COG5019 177 DD 178 (373)
T ss_pred HH
Confidence 53
No 322
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.81 E-value=3.7e-07 Score=64.80 Aligned_cols=88 Identities=18% Similarity=0.149 Sum_probs=53.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCcccccc-------cccccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL-------RPLSYR 78 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~ 78 (168)
.--+++++|-|.+|||||+..+....- ....-.++.. ...-.+...+..+++.|.||.-+-.+. .-...+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEee
Confidence 456899999999999999998865431 1111111111 111122333445666999995432221 222457
Q ss_pred CCcEEEEEEeCCChhHHH
Q 030961 79 GADVFVLAFSLVSRASYE 96 (168)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~ 96 (168)
.+|.+++|.|++..+.-.
T Consensus 139 taDlilMvLDatk~e~qr 156 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQR 156 (364)
T ss_pred cccEEEEEecCCcchhHH
Confidence 899999999998765443
No 323
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.80 E-value=1.9e-08 Score=68.55 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=36.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeceeEEEEECCeEEEEEEEeCCC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG 65 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 65 (168)
.++++++|.||+|||||+|++.+... .....+..+.. ...+.++ ..+.++||||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~-~~~~~~~---~~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKS-MQEVHLD---KKVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcc-eEEEEeC---CCEEEEECcC
Confidence 47999999999999999999998654 22222322222 1222232 2467799998
No 324
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.80 E-value=1.8e-08 Score=75.04 Aligned_cols=74 Identities=15% Similarity=0.248 Sum_probs=53.3
Q ss_pred EEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhH-------HHHHHHhHHHHHchhC-----CCCcEEEEeeCC
Q 030961 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS-------YENVLKKWIPELQHYS-----PGVPVVLVGTKL 122 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-------~~~~~~~~~~~l~~~~-----~~~p~ivv~nK~ 122 (168)
...+.++|++||..-+.-|.+.+.++++++||+++++=+- -..+ .+-+..+.... .+.+++++.||.
T Consensus 194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM-~eS~~LF~sI~n~~~F~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRM-HESLKLFESICNNKWFANTSIILFLNKK 272 (354)
T ss_pred CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHH-HHHHHHHHHHhcCcccccCcEEEEeecH
Confidence 3567789999998888889999999999999999864211 1111 22333333332 579999999999
Q ss_pred cccccch
Q 030961 123 DLREDKH 129 (168)
Q Consensus 123 D~~~~~~ 129 (168)
|+-.+..
T Consensus 273 DLFeEKi 279 (354)
T KOG0082|consen 273 DLFEEKI 279 (354)
T ss_pred HHHHHHh
Confidence 9987643
No 325
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.4e-07 Score=70.40 Aligned_cols=118 Identities=18% Similarity=0.185 Sum_probs=71.8
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC-------CCC--ceeece-eEEEEECCeEEEEEEEeCCCCccc-------
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTD-------YIP--TVFDNF-SANVVAEGTTVNLGLWDTAGQEDY------- 69 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~-------~~~--~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~------- 69 (168)
..+.++++|..|.|||||+|.|+...+... ..+ +..... ...+.-++..+.+.+.||||-...
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 358999999999999999999887654322 111 112211 123334678899999999993221
Q ss_pred ------------------ccccccccc--CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccc
Q 030961 70 ------------------NRLRPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (168)
Q Consensus 70 ------------------~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~ 128 (168)
..+.+.... .+|++++.+..+ +..+..+.-..++.+.. .+.+|-|+-|+|.....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~-ghgL~p~Di~~Mk~l~~---~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPT-GHGLKPLDIEFMKKLSK---KVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCC-CCCCcHhhHHHHHHHhc---cccccceeeccccCCHH
Confidence 111222222 466777776643 23344443445555554 57788888999986553
No 326
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.79 E-value=2.7e-08 Score=73.21 Aligned_cols=77 Identities=21% Similarity=0.193 Sum_probs=58.0
Q ss_pred cccCCcEEEEEEeCCChh-HHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCC
Q 030961 76 SYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 154 (168)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (168)
.+.++|.+++|+|+.++. ++..+ +.|+..+.. .++|+++|+||+|+..... ...........+.
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~--~~ip~iIVlNK~DL~~~~~------------~~~~~~~~~~~g~ 139 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEA--AGIEPVIVLTKADLLDDEE------------EELELVEALALGY 139 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHH--cCCCEEEEEEHHHCCChHH------------HHHHHHHHHhCCC
Confidence 478999999999999887 77776 678777665 4689999999999965421 1222333344665
Q ss_pred cEEEEecccCccCC
Q 030961 155 SYYIECSSKTQQVC 168 (168)
Q Consensus 155 ~~~~~~Sa~~~~~i 168 (168)
+++++||+++.|+
T Consensus 140 -~v~~vSA~~g~gi 152 (287)
T cd01854 140 -PVLAVSAKTGEGL 152 (287)
T ss_pred -eEEEEECCCCccH
Confidence 8999999999885
No 327
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.78 E-value=2.3e-08 Score=66.02 Aligned_cols=78 Identities=14% Similarity=0.104 Sum_probs=52.6
Q ss_pred ccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCC
Q 030961 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 154 (168)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (168)
..+..+|++++|+|+.++.+... ..+...+.....+.|+++++||+|+.+... ..+..+..+..+.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~~~k~~iivlNK~DL~~~~~------------~~~~~~~~~~~~~ 72 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVDPRKKNILLLNKADLLTEEQ------------RKAWAEYFKKEGI 72 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhccCCCcEEEEEechhcCCHHH------------HHHHHHHHHhcCC
Confidence 45678999999999988776442 233333333224689999999999954321 2234444555565
Q ss_pred cEEEEecccCccC
Q 030961 155 SYYIECSSKTQQV 167 (168)
Q Consensus 155 ~~~~~~Sa~~~~~ 167 (168)
.++++||.++.+
T Consensus 73 -~ii~iSa~~~~~ 84 (141)
T cd01857 73 -VVVFFSALKENA 84 (141)
T ss_pred -eEEEEEecCCCc
Confidence 789999998864
No 328
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.77 E-value=2.9e-08 Score=66.70 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKF 33 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~ 33 (168)
..++++++|.||+|||||+|++.+...
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCc
Confidence 357899999999999999999998653
No 329
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.77 E-value=3.8e-08 Score=67.18 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.8
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
+.++|-+.|++|||||+|+-+++..
T Consensus 12 ~~~~i~v~Gp~GSGKTaLie~~~~~ 36 (202)
T COG0378 12 PMLRIGVGGPPGSGKTALIEKTLRA 36 (202)
T ss_pred ceEEEEecCCCCcCHHHHHHHHHHH
Confidence 3589999999999999999987753
No 330
>PRK12289 GTPase RsgA; Reviewed
Probab=98.77 E-value=4.5e-08 Score=73.75 Aligned_cols=81 Identities=21% Similarity=0.196 Sum_probs=57.1
Q ss_pred cccccccCCcEEEEEEeCCChh-HHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH
Q 030961 72 LRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 150 (168)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (168)
+....+.++|.+++|+|+.++. +...+ ..|+..... .++|+++|+||+|+..... .+.......
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~~~~------------~~~~~~~~~ 146 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVSPTE------------QQQWQDRLQ 146 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCChHH------------HHHHHHHHH
Confidence 4445678999999999998775 44444 566665533 5799999999999964321 122223334
Q ss_pred HhCCcEEEEecccCccCC
Q 030961 151 QIGASYYIECSSKTQQVC 168 (168)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~i 168 (168)
..+. .++++||++++|+
T Consensus 147 ~~g~-~v~~iSA~tg~GI 163 (352)
T PRK12289 147 QWGY-QPLFISVETGIGL 163 (352)
T ss_pred hcCC-eEEEEEcCCCCCH
Confidence 5676 7899999999985
No 331
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.8e-07 Score=74.26 Aligned_cols=145 Identities=16% Similarity=0.193 Sum_probs=87.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece----------------------------------------
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---------------------------------------- 45 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~---------------------------------------- 45 (168)
+...||++.|..++||||++|.++..+.-.......+--|
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4567999999999999999999988654221111100000
Q ss_pred ----eEEEEECCeEE-----EEEEEeCCCCc---cccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCC
Q 030961 46 ----SANVVAEGTTV-----NLGLWDTAGQE---DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV 113 (168)
Q Consensus 46 ----~~~~~~~~~~~-----~~~i~D~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~ 113 (168)
..++..+...+ .+.+.|.||.+ ....-...++.++|++|+|.++.+..+..+ .+++....+. +.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se--k~Ff~~vs~~--Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE--KQFFHKVSEE--KP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH--HHHHHHhhcc--CC
Confidence 00111111111 24568888854 333444556789999999999888777766 4555555553 45
Q ss_pred cEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCC-------cEEEEecccC
Q 030961 114 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-------SYYIECSSKT 164 (168)
Q Consensus 114 p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~ 164 (168)
.+.|+-||.|...... .+.+...+-..+++. ..+|+|||+.
T Consensus 263 niFIlnnkwDasase~----------ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 263 NIFILNNKWDASASEP----------ECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred cEEEEechhhhhcccH----------HHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 5678889999987643 444444433222222 1467888764
No 332
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=2.7e-08 Score=75.31 Aligned_cols=143 Identities=16% Similarity=0.098 Sum_probs=89.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCCCCceeeceeEEE-EECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSANV-VAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
-|+..|+-..|||||+..+.+..- ++.-...++. ...+ ..+-....+.++|.||++++-.-.-..+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~Ti--Dlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITI--DLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceE--eeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 477889999999999998876532 1221111111 1111 122233488899999999987766667778999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHH--hCCcEEEEeccc
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ--IGASYYIECSSK 163 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~ 163 (168)
|++.++.-.-+. .+.+..+... .....++|+||+|..++.. ..+..++.... +...++|.+|++
T Consensus 80 vV~~deGl~~qt--gEhL~iLdll-gi~~giivltk~D~~d~~r-----------~e~~i~~Il~~l~l~~~~i~~~s~~ 145 (447)
T COG3276 80 VVAADEGLMAQT--GEHLLILDLL-GIKNGIIVLTKADRVDEAR-----------IEQKIKQILADLSLANAKIFKTSAK 145 (447)
T ss_pred EEeCccCcchhh--HHHHHHHHhc-CCCceEEEEeccccccHHH-----------HHHHHHHHHhhcccccccccccccc
Confidence 999865443333 2333333332 2456699999999986532 11112222211 444578999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|+||
T Consensus 146 ~g~GI 150 (447)
T COG3276 146 TGRGI 150 (447)
T ss_pred cCCCH
Confidence 99986
No 333
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.75 E-value=9.1e-09 Score=68.99 Aligned_cols=82 Identities=16% Similarity=0.124 Sum_probs=52.6
Q ss_pred cccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHH
Q 030961 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 149 (168)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (168)
+.++.+.++++|++++|+|++++..... ..+...+.. .+.|+++|+||+|+..... ..+...+.
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~------------~~~~~~~~ 66 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE--LGKKLLIVLNKADLVPKEV------------LEKWKSIK 66 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh--CCCcEEEEEEhHHhCCHHH------------HHHHHHHH
Confidence 3455666778999999999987654332 223333322 3689999999999854321 11111333
Q ss_pred HHhCCcEEEEecccCccCC
Q 030961 150 KQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 150 ~~~~~~~~~~~Sa~~~~~i 168 (168)
...+. +++++||+++.|+
T Consensus 67 ~~~~~-~~~~iSa~~~~gi 84 (156)
T cd01859 67 ESEGI-PVVYVSAKERLGT 84 (156)
T ss_pred HhCCC-cEEEEEccccccH
Confidence 34454 7899999999884
No 334
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.74 E-value=3.8e-08 Score=67.06 Aligned_cols=56 Identities=21% Similarity=0.117 Sum_probs=37.0
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCC
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQ 66 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~ 66 (168)
..++++++|.+|+|||||+|++.+..+... ....+++. ...+.++ ..+.+|||||-
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 457899999999999999999998765321 12112222 2223333 34678999994
No 335
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.72 E-value=1.8e-08 Score=69.79 Aligned_cols=83 Identities=20% Similarity=0.197 Sum_probs=54.2
Q ss_pred ccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHH
Q 030961 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 148 (168)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (168)
+..++..+++.+|++++|+|+.++..- |...+.....+.|+++|+||+|+.... ...+....+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~~~~~~~ilV~NK~Dl~~~~-----------~~~~~~~~~ 86 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLFGGNNPVILVGNKIDLLPKD-----------KNLVRIKNW 86 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHhcCCCcEEEEEEchhcCCCC-----------CCHHHHHHH
Confidence 466778888999999999999875421 112222222468999999999996432 223333333
Q ss_pred H-----HHhCC--cEEEEecccCccCC
Q 030961 149 R-----KQIGA--SYYIECSSKTQQVC 168 (168)
Q Consensus 149 ~-----~~~~~--~~~~~~Sa~~~~~i 168 (168)
. ...+. ..++++||++|.|+
T Consensus 87 ~~~~~~~~~~~~~~~i~~vSA~~~~gi 113 (190)
T cd01855 87 LRAKAAAGLGLKPKDVILISAKKGWGV 113 (190)
T ss_pred HHHHHHhhcCCCcccEEEEECCCCCCH
Confidence 3 22222 35899999999985
No 336
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=6.5e-08 Score=71.98 Aligned_cols=120 Identities=19% Similarity=0.155 Sum_probs=77.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--eceeEEEE------ECCe-----------------------
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--DNFSANVV------AEGT----------------------- 54 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~--~~~~~~~~------~~~~----------------------- 54 (168)
..+.-|+++|.-..||||+++.|+...|......... +.|..-+. ++|.
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 3467799999999999999999999988754433221 12221111 1111
Q ss_pred ----------EEEEEEEeCCCCccc-----------cccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCC
Q 030961 55 ----------TVNLGLWDTAGQEDY-----------NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV 113 (168)
Q Consensus 55 ----------~~~~~i~D~~g~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~ 113 (168)
--.+.++||||.-+- .....=+...+|.|+++||+..-+--++. .+.+..++- .+-
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG--~Ed 212 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKG--HED 212 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhC--Ccc
Confidence 123678999994321 22222345689999999998765544444 555666655 345
Q ss_pred cEEEEeeCCcccccc
Q 030961 114 PVVLVGTKLDLREDK 128 (168)
Q Consensus 114 p~ivv~nK~D~~~~~ 128 (168)
.+-||.||+|..+..
T Consensus 213 kiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 213 KIRVVLNKADQVDTQ 227 (532)
T ss_pred eeEEEeccccccCHH
Confidence 667788999986653
No 337
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.71 E-value=7.9e-08 Score=70.17 Aligned_cols=25 Identities=20% Similarity=0.124 Sum_probs=21.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
...-+-++|.+|||||||++++++.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4677899999999999999988764
No 338
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.71 E-value=6.4e-08 Score=64.89 Aligned_cols=55 Identities=20% Similarity=0.169 Sum_probs=37.1
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEE-EECCeEEEEEEEeCCC
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-VAEGTTVNLGLWDTAG 65 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g 65 (168)
...+++++|.+++||||+++++.+... ..+.++.+.+....+ ..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 457899999999999999999997543 233344443332222 2222 577899998
No 339
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.4e-07 Score=68.30 Aligned_cols=145 Identities=21% Similarity=0.217 Sum_probs=87.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC---C-------CCCCC-CC-----ceeecee-EEEEECCeEEEEEEEeCCCCcc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSN---K-------FPTDY-IP-----TVFDNFS-ANVVAEGTTVNLGLWDTAGQED 68 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~---~-------~~~~~-~~-----~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~ 68 (168)
.+-++|..+|+-..|||||...+..- + |.... .| -++.... ..+...+.++-. .|+||+..
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyah--VDcPGHaD 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAH--VDCPGHAD 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEe--ccCCChHH
Confidence 46789999999999999998876531 1 11110 11 1111111 123334445444 99999988
Q ss_pred ccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCc-EEEEeeCCcccccchhhhcCCCCCcccHHHHHH
Q 030961 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (168)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (168)
|-..+-.-..+.|+.|+|+++.+...-+.- +.+ +|.+. -.+| ++++.||+|+.++++.. .+-..+.++
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTr--EHi-Llarq-vGvp~ivvflnK~Dmvdd~ell-------elVemEvre 156 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTR--EHI-LLARQ-VGVPYIVVFLNKVDMVDDEELL-------ELVEMEVRE 156 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcch--hhh-hhhhh-cCCcEEEEEEecccccCcHHHH-------HHHHHHHHH
Confidence 865444455678999999999886543331 111 22222 2454 57889999998765411 134566777
Q ss_pred HHHHhCC----cEEEEeccc
Q 030961 148 LRKQIGA----SYYIECSSK 163 (168)
Q Consensus 148 ~~~~~~~----~~~~~~Sa~ 163 (168)
+...|+. .+++.-||.
T Consensus 157 LLs~y~f~gd~~Pii~gSal 176 (394)
T COG0050 157 LLSEYGFPGDDTPIIRGSAL 176 (394)
T ss_pred HHHHcCCCCCCcceeechhh
Confidence 8888876 245555554
No 340
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.69 E-value=7.6e-08 Score=70.51 Aligned_cols=56 Identities=27% Similarity=0.293 Sum_probs=37.0
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeceeEEEEECCeEEEEEEEeCCCC
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 66 (168)
..++++++|.||+|||||+|++.+.+.. ....+..+. ....+.++. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~-~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTK-GQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeec-ceEEEEeCC---CEEEEECCCc
Confidence 4688999999999999999999986532 222222111 122233322 3578999997
No 341
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.63 E-value=1.6e-07 Score=69.13 Aligned_cols=58 Identities=26% Similarity=0.295 Sum_probs=37.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeceeEEEEECCeEEEEEEEeCCCCc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE 67 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 67 (168)
...++++++|.||+|||||+|++.+.... ....+..+... ..+.++. .+.++||||--
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~-~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ-QWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE-EEEEeCC---cEEEEECCCcC
Confidence 35689999999999999999999987642 22222222221 1223332 36689999973
No 342
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.60 E-value=9.9e-08 Score=64.08 Aligned_cols=79 Identities=16% Similarity=0.042 Sum_probs=49.5
Q ss_pred cccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCc
Q 030961 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (168)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (168)
.+.++|++++|+|+.++..-.. ..+...+.....+.|+++|+||+|+.+... .......+...+..
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~-----------~~~~~~~~~~~~~~- 70 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV-----------TARWVKILSKEYPT- 70 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH-----------HHHHHHHHhcCCcE-
Confidence 4678999999999988743221 334444443334689999999999964321 12223333333332
Q ss_pred EEEEecccCccCC
Q 030961 156 YYIECSSKTQQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~~~~i 168 (168)
..+.+||+.+.|+
T Consensus 71 ~~~~iSa~~~~~~ 83 (157)
T cd01858 71 IAFHASINNPFGK 83 (157)
T ss_pred EEEEeeccccccH
Confidence 3577999998874
No 343
>PRK12288 GTPase RsgA; Reviewed
Probab=98.59 E-value=2.6e-07 Score=69.61 Aligned_cols=79 Identities=18% Similarity=0.258 Sum_probs=57.2
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcE
Q 030961 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (168)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (168)
..++|.+++|++.....++..+ +.|+..... .++|++||+||+|+..... .....+........+. +
T Consensus 118 aANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~--~~i~~VIVlNK~DL~~~~~---------~~~~~~~~~~y~~~g~-~ 184 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNII-DRYLVACET--LGIEPLIVLNKIDLLDDEG---------RAFVNEQLDIYRNIGY-R 184 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEECccCCCcHH---------HHHHHHHHHHHHhCCC-e
Confidence 4579999999999888888887 788775543 5689999999999965421 0011222333345676 8
Q ss_pred EEEecccCccCC
Q 030961 157 YIECSSKTQQVC 168 (168)
Q Consensus 157 ~~~~Sa~~~~~i 168 (168)
++++||++++|+
T Consensus 185 v~~vSA~tg~Gi 196 (347)
T PRK12288 185 VLMVSSHTGEGL 196 (347)
T ss_pred EEEEeCCCCcCH
Confidence 999999999885
No 344
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.58 E-value=1.3e-07 Score=65.50 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNK 32 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~ 32 (168)
...++++|.+|+|||||+|.|.+..
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999999754
No 345
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.56 E-value=8.8e-08 Score=72.65 Aligned_cols=86 Identities=26% Similarity=0.348 Sum_probs=59.5
Q ss_pred CccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHH
Q 030961 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG 145 (168)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
.+.|..+.......++++++|+|+.+.. ..|...+.+...+.|+++|+||+|+.+.. ...++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~------~s~~~~l~~~~~~~piilV~NK~DLl~k~-----------~~~~~~ 112 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE------GSLIPELKRFVGGNPVLLVGNKIDLLPKS-----------VNLSKI 112 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC------CCccHHHHHHhCCCCEEEEEEchhhCCCC-----------CCHHHH
Confidence 4566777777788999999999987654 22334444443468999999999997532 223333
Q ss_pred H----HHHHHhCCc--EEEEecccCccCC
Q 030961 146 E----ELRKQIGAS--YYIECSSKTQQVC 168 (168)
Q Consensus 146 ~----~~~~~~~~~--~~~~~Sa~~~~~i 168 (168)
. ++++..++. .++++||++|.|+
T Consensus 113 ~~~l~~~~k~~g~~~~~i~~vSAk~g~gv 141 (360)
T TIGR03597 113 KEWMKKRAKELGLKPVDIILVSAKKGNGI 141 (360)
T ss_pred HHHHHHHHHHcCCCcCcEEEecCCCCCCH
Confidence 3 345666652 4899999999985
No 346
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=5.7e-07 Score=67.25 Aligned_cols=156 Identities=16% Similarity=0.172 Sum_probs=93.3
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC-----------------------CCCceeece-eEEEEE----------C
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTD-----------------------YIPTVFDNF-SANVVA----------E 52 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~-----------------------~~~~~~~~~-~~~~~~----------~ 52 (168)
..++++++|...+|||||+-.|..+.+..- +...++.+. .+-+.+ +
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 578999999999999999987765433210 011111111 111111 1
Q ss_pred CeEEEEEEEeCCCCccccccccccccC--CcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchh
Q 030961 53 GTTVNLGLWDTAGQEDYNRLRPLSYRG--ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 130 (168)
Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~ 130 (168)
.-.--+.++|..|+..|....-..+.. .|..++|++++....... ++.+..+.. -++|+.++.+|+|+......
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~A--L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAA--LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHH--hCCCeEEEEEeeccccchhH
Confidence 112346779999999887655555443 678888888877655443 445555555 36999999999999876220
Q ss_pred ---hh------cC------CCCCcccHHHHHHHHH---HhCCcEEEEecccCccC
Q 030961 131 ---LA------DH------PGLVPVTTAQGEELRK---QIGASYYIECSSKTQQV 167 (168)
Q Consensus 131 ---~~------~~------~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~ 167 (168)
.. .. +... -..+++...++ .-+++|+|.+|+.+|+|
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~V-t~~ddAv~Aaq~~~s~nivPif~vSsVsGeg 375 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRV-TTKDDAVKAAQELCSGNIVPIFAVSSVSGEG 375 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEe-echHHHHHHHHHhccCCceeEEEEeecCccc
Confidence 00 00 1111 12233333332 34557899999999987
No 347
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.53 E-value=2.7e-07 Score=68.98 Aligned_cols=55 Identities=25% Similarity=0.231 Sum_probs=37.5
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeece-eEEEEECCeEEEEEEEeCCCC
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQ 66 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~ 66 (168)
...+++++|-||+||||+||+|.+.... ....| +.+- ...+.++.. +.++||||-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCCC---eEEecCCCc
Confidence 4578999999999999999999987642 22223 3222 223333332 677999995
No 348
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.51 E-value=5.2e-07 Score=60.45 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=35.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeceeEEEEECCeEEEEEEEeCCC
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG 65 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 65 (168)
...+++++|.+|+|||||+|.+.+... .....+..+... .....+ ..+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~-~~~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ-QEVKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce-EEEEec---CCEEEEECCC
Confidence 467899999999999999999998653 222222222221 112222 2467799998
No 349
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.50 E-value=6.8e-08 Score=70.70 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=71.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeceeEEEEE-CCeEEEEEEEeCCCCccccc--cc------cc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTD--YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNR--LR------PL 75 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~--~~------~~ 75 (168)
...-|.+||-.|+|||||++.|.+...... ...|...+ .+.... .+. .+.+.||-|.-.-.+ +. -.
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT-~h~a~Lpsg~--~vlltDTvGFisdLP~~LvaAF~ATLe 253 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPT-LHSAHLPSGN--FVLLTDTVGFISDLPIQLVAAFQATLE 253 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccch-hhhccCCCCc--EEEEeechhhhhhCcHHHHHHHHHHHH
Confidence 456799999999999999999986543221 11222111 111122 233 344589998533221 11 12
Q ss_pred cccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhC-CCCc----EEEEeeCCcccccc
Q 030961 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVP----VVLVGTKLDLREDK 128 (168)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p----~ivv~nK~D~~~~~ 128 (168)
....+|.++-|.|+++|.--... ...+..+.... ++.| ++=|-||+|..+..
T Consensus 254 eVaeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~ 310 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE 310 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhcccccccccc
Confidence 23579999999999998765543 55556666654 3344 45677888876653
No 350
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.46 E-value=1.1e-06 Score=65.92 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=92.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc----------------eeece-------eEEEE------------
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT----------------VFDNF-------SANVV------------ 50 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~----------------~~~~~-------~~~~~------------ 50 (168)
...+.+...|+-+.|||||+-.|..++...-.-.+ ....+ .+.+.
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 45677899999999999999988876553210000 00000 00011
Q ss_pred -ECCeEEEEEEEeCCCCccccccccc--cccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 51 -AEGTTVNLGLWDTAGQEDYNRLRPL--SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 51 -~~~~~~~~~i~D~~g~~~~~~~~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
++...--+.+.||.|++.|....-. .-.+.|..++++.+++.-+... ++.+..... -+.|++++.||+|+.++
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t--kEHLgi~~a--~~lPviVvvTK~D~~~d 270 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT--KEHLGIALA--MELPVIVVVTKIDMVPD 270 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh--hHhhhhhhh--hcCCEEEEEEecccCcH
Confidence 1112234678999999987543222 2346899999999888776554 344444433 37999999999999876
Q ss_pred chhhhcC---------CCCCcc-----cHH--HHHHHHHHhCCcEEEEecccCccC
Q 030961 128 KHYLADH---------PGLVPV-----TTA--QGEELRKQIGASYYIECSSKTQQV 167 (168)
Q Consensus 128 ~~~~~~~---------~~~~~~-----~~~--~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (168)
.....-- -+.-+. ... .+.......+.+|+|.+|+.+|+|
T Consensus 271 dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~G 326 (527)
T COG5258 271 DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEG 326 (527)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCcc
Confidence 4311100 000000 000 112222233357999999999987
No 351
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.45 E-value=2.3e-07 Score=62.13 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
-.++++|++|||||||+|.|...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999986
No 352
>PRK12288 GTPase RsgA; Reviewed
Probab=98.44 E-value=3.9e-07 Score=68.67 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 030961 11 CVTVGDGAVGKTCMLICYTSNK 32 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~~ 32 (168)
++|+|.+|+|||||+|+|++..
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred EEEECCCCCCHHHHHHHhcccc
Confidence 7899999999999999999754
No 353
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=2.5e-06 Score=67.00 Aligned_cols=113 Identities=17% Similarity=0.123 Sum_probs=74.8
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
+++-+++||+||.|||||+..++..- . ..|+.........+.+.+.++.+.++|.. +..| -...+-+|.++++
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~-t---k~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~m-iDvaKIaDLVlLl 140 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRF-T---KQTIDEIRGPITVVSGKTRRITFLECPSD--LHQM-IDVAKIADLVLLL 140 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHH-H---HhhhhccCCceEEeecceeEEEEEeChHH--HHHH-HhHHHhhheeEEE
Confidence 45667799999999999999887631 1 11222112223356788889999999932 2222 2334568999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccch
Q 030961 87 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~ 129 (168)
+|.+-.-..+.. +++..+..+. =..++-|.|..|+.....
T Consensus 141 IdgnfGfEMETm--EFLnil~~HG-mPrvlgV~ThlDlfk~~s 180 (1077)
T COG5192 141 IDGNFGFEMETM--EFLNILISHG-MPRVLGVVTHLDLFKNPS 180 (1077)
T ss_pred eccccCceehHH--HHHHHHhhcC-CCceEEEEeecccccChH
Confidence 998877665553 5556565542 233567889999987754
No 354
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.38 E-value=3.8e-06 Score=59.71 Aligned_cols=88 Identities=16% Similarity=0.058 Sum_probs=51.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC--CCCCCCC---CceeeceeEEEEECCeEEEEEEEeCCCCccccc------cc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTDYI---PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR------LR 73 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~ 73 (168)
..+..-|.++|++++|||+|+|++++. .|..... .|.+..........+....+.++||+|...... +.
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 345677999999999999999999998 5542211 111111111111112456788999999754322 11
Q ss_pred cccccC--CcEEEEEEeCCCh
Q 030961 74 PLSYRG--ADVFVLAFSLVSR 92 (168)
Q Consensus 74 ~~~~~~--~~~~i~v~d~~~~ 92 (168)
-..+.. ++++++..+....
T Consensus 84 ~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 84 LFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHhCEEEEeccCccc
Confidence 122223 7777777665543
No 355
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=1.1e-06 Score=70.66 Aligned_cols=117 Identities=14% Similarity=0.131 Sum_probs=79.9
Q ss_pred CCcceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCce------------eecee-EEEEECCeEEEEEEEeCCCCc
Q 030961 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTV------------FDNFS-ANVVAEGTTVNLGLWDTAGQE 67 (168)
Q Consensus 3 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~--~~~~~~~~~------------~~~~~-~~~~~~~~~~~~~i~D~~g~~ 67 (168)
+..+.+-+++++-+-..|||||+..|+-.. ........+ +.+.+ ..+..-...+.+.++|+||+-
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 445667789999999999999999987532 211111111 11111 122334467888999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCc
Q 030961 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123 (168)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D 123 (168)
.|.+......+-+|++++++|+..+--.+.. ..+.+... .+..+++|+||+|
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~--~vlrq~~~--~~~~~~lvinkid 135 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTY--AVLRQAWI--EGLKPILVINKID 135 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHH--HHHHHHHH--ccCceEEEEehhh
Confidence 9999999999999999999999765443332 12222222 4577889999999
No 356
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.38 E-value=8.2e-08 Score=68.54 Aligned_cols=92 Identities=13% Similarity=0.053 Sum_probs=49.9
Q ss_pred EEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcC
Q 030961 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 134 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 134 (168)
++.+.+++|.|--.-. -....-+|.+++|....-.+..+.++.-+++ +.=++|.||+|....+.
T Consensus 121 G~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE--------iaDi~vVNKaD~~gA~~----- 184 (266)
T PF03308_consen 121 GFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIME--------IADIFVVNKADRPGADR----- 184 (266)
T ss_dssp T-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHH--------H-SEEEEE--SHHHHHH-----
T ss_pred CCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhh--------hccEEEEeCCChHHHHH-----
Confidence 4567778887632110 1123468999999987666655443211111 34477789999765542
Q ss_pred CCCCcccHHHHHHHHHHh-----CC-cEEEEecccCccCC
Q 030961 135 PGLVPVTTAQGEELRKQI-----GA-SYYIECSSKTQQVC 168 (168)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~-----~~-~~~~~~Sa~~~~~i 168 (168)
...+.+...... +| ++++.+||.+++||
T Consensus 185 ------~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi 218 (266)
T PF03308_consen 185 ------TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGI 218 (266)
T ss_dssp ------HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSH
T ss_pred ------HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCH
Confidence 233333333321 11 47899999999985
No 357
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.37 E-value=1.4e-06 Score=58.35 Aligned_cols=72 Identities=17% Similarity=0.088 Sum_probs=45.2
Q ss_pred cEEEEEEeCCChhHHHHHHHhHH-HHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEE
Q 030961 81 DVFVLAFSLVSRASYENVLKKWI-PELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (168)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~-~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (168)
|++++|+|+.++.+.... .+. ..+.. .+.|+++|+||+|+..... + .+....+....+ ..++.
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~----------~-~~~~~~~~~~~~-~~ii~ 64 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE--KGKKLILVLNKADLVPKEV----------L-RKWLAYLRHSYP-TIPFK 64 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc--CCCCEEEEEechhcCCHHH----------H-HHHHHHHHhhCC-ceEEE
Confidence 689999999887665432 222 22222 4689999999999954321 1 111122323333 36899
Q ss_pred ecccCccCC
Q 030961 160 CSSKTQQVC 168 (168)
Q Consensus 160 ~Sa~~~~~i 168 (168)
+||++|.|+
T Consensus 65 vSa~~~~gi 73 (155)
T cd01849 65 ISATNGQGI 73 (155)
T ss_pred EeccCCcCh
Confidence 999999885
No 358
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.37 E-value=2e-06 Score=74.22 Aligned_cols=113 Identities=26% Similarity=0.189 Sum_probs=64.2
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCC--CC--c--eeeceeEEEEECCeEEEEEEEeCCCCccc--------ccccccc
Q 030961 11 CVTVGDGAVGKTCMLICYTSNKFPTDY--IP--T--VFDNFSANVVAEGTTVNLGLWDTAGQEDY--------NRLRPLS 76 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~~~~~~~--~~--~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~ 76 (168)
.+|+|++|+||||++++- +..+.-.. .. + .+.+....--. .-+-.++||+|.... ...|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf---~~~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWF---TDEAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEe---cCCEEEEcCCCccccCCCcccccHHHHHHH
Confidence 699999999999999876 33332110 00 0 00000000001 113457999994321 2234444
Q ss_pred c---------cCCcEEEEEEeCCCh-----hHHHH---HHHhHHHHHchhC-CCCcEEEEeeCCccccc
Q 030961 77 Y---------RGADVFVLAFSLVSR-----ASYEN---VLKKWIPELQHYS-PGVPVVLVGTKLDLRED 127 (168)
Q Consensus 77 ~---------~~~~~~i~v~d~~~~-----~s~~~---~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~ 127 (168)
+ +..+++|+++|+.+- +.... .....++++.+.. -..||.|+.||+|+...
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 3 248999999997542 22211 1234444444443 58999999999998855
No 359
>PRK12289 GTPase RsgA; Reviewed
Probab=98.35 E-value=1.1e-06 Score=66.43 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHhcCC
Q 030961 11 CVTVGDGAVGKTCMLICYTSNK 32 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~~ 32 (168)
++|+|.+|+|||||+|.|++..
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCcc
Confidence 7999999999999999999653
No 360
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.34 E-value=2.8e-06 Score=64.18 Aligned_cols=82 Identities=17% Similarity=0.067 Sum_probs=52.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeece-eEEEEECC---------------eEEEEEEEeCCCCcccc-
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNF-SANVVAEG---------------TTVNLGLWDTAGQEDYN- 70 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~---------------~~~~~~i~D~~g~~~~~- 70 (168)
+++.++|.|++|||||++.+.+... .....|-.+... ...+.+.+ ....+.+.|.||.-.-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998765 332222222221 11222222 12457789999954321
Q ss_pred ---cccc---ccccCCcEEEEEEeCC
Q 030961 71 ---RLRP---LSYRGADVFVLAFSLV 90 (168)
Q Consensus 71 ---~~~~---~~~~~~~~~i~v~d~~ 90 (168)
.+.. ..++.+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1222 2467899999999874
No 361
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.29 E-value=3.8e-06 Score=62.07 Aligned_cols=83 Identities=22% Similarity=0.159 Sum_probs=55.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEE---------------CCeEEEEEEEeCCCCcc--
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVA---------------EGTTVNLGLWDTAGQED-- 68 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~---------------~~~~~~~~i~D~~g~~~-- 68 (168)
.-+++.+||.|++|||||+|.+.+........|-.+.+- ..++.+ ......++++|+.|.-.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 467999999999999999999998876555444333332 112222 12357789999998432
Q ss_pred --ccccccc---cccCCcEEEEEEeC
Q 030961 69 --YNRLRPL---SYRGADVFVLAFSL 89 (168)
Q Consensus 69 --~~~~~~~---~~~~~~~~i~v~d~ 89 (168)
-..+-.. .++.+|+++-|+++
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~ 124 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRA 124 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEe
Confidence 2223333 35679999998875
No 362
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=3.4e-06 Score=62.40 Aligned_cols=147 Identities=17% Similarity=0.128 Sum_probs=88.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC----------CCCCCCC-C---ceeece-eEE--EEECCeEEEEEEEeCCCCc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSN----------KFPTDYI-P---TVFDNF-SAN--VVAEGTTVNLGLWDTAGQE 67 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~----------~~~~~~~-~---~~~~~~-~~~--~~~~~~~~~~~i~D~~g~~ 67 (168)
+.+-++|.-+|+-..|||||...+..- +|.+... | .-+... ... +.....+|-. .|+||+.
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH--~DCPGHA 128 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAH--TDCPGHA 128 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeecccccccc--CCCCchH
Confidence 345678999999999999998876531 1111100 0 001111 111 2222333333 8999998
Q ss_pred cccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHH
Q 030961 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (168)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (168)
.|-..+-.-..+-|+.|+|+.++|...-+. ++.+.+.++. .=..+++.+||.|+.++.+- ..+-+-+.++
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~MPQT--rEHlLLArQV-GV~~ivvfiNKvD~V~d~e~-------leLVEmE~RE 198 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGPMPQT--REHLLLARQV-GVKHIVVFINKVDLVDDPEM-------LELVEMEIRE 198 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCCCcch--HHHHHHHHHc-CCceEEEEEecccccCCHHH-------HHHHHHHHHH
Confidence 886655555667899999999999765443 2222222222 22457889999999865431 1144556777
Q ss_pred HHHHhCC----cEEEEeccc
Q 030961 148 LRKQIGA----SYYIECSSK 163 (168)
Q Consensus 148 ~~~~~~~----~~~~~~Sa~ 163 (168)
+..++|. .|++.=||.
T Consensus 199 lLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 199 LLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred HHHHcCCCCCCCCeeecchh
Confidence 7777766 456665554
No 363
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.26 E-value=5.6e-06 Score=60.29 Aligned_cols=95 Identities=11% Similarity=0.076 Sum_probs=54.1
Q ss_pred CCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhh
Q 030961 52 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL 131 (168)
Q Consensus 52 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~ 131 (168)
+.-++.+.|++|.|--.-. -....-+|.++++.-..-.+.++-++.-++ ++-=++|+||.|......
T Consensus 140 dAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~Gim--------EiaDi~vINKaD~~~A~~-- 206 (323)
T COG1703 140 DAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIM--------EIADIIVINKADRKGAEK-- 206 (323)
T ss_pred HhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhh--------hhhheeeEeccChhhHHH--
Confidence 3346677888888742210 112345888888877666666655422111 234478889999655432
Q ss_pred hcCCCCCcccHHHHHHHH-------HHhCC-cEEEEecccCccCC
Q 030961 132 ADHPGLVPVTTAQGEELR-------KQIGA-SYYIECSSKTQQVC 168 (168)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~Sa~~~~~i 168 (168)
...+..... +..+| .+.+.+||.+|+||
T Consensus 207 ---------a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi 242 (323)
T COG1703 207 ---------AARELRSALDLLREVWRENGWRPPVVTTSALEGEGI 242 (323)
T ss_pred ---------HHHHHHHHHHhhcccccccCCCCceeEeeeccCCCH
Confidence 122211111 12233 46899999999986
No 364
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.26 E-value=1.6e-06 Score=63.96 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~ 32 (168)
-.++++|++|+|||||+|.+.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 468999999999999999998754
No 365
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.24 E-value=4.5e-06 Score=56.17 Aligned_cols=65 Identities=11% Similarity=0.008 Sum_probs=36.9
Q ss_pred EEEEEEEeCCCCcccccccc--------ccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcc
Q 030961 55 TVNLGLWDTAGQEDYNRLRP--------LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 124 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~ 124 (168)
.....++|++|......+.. ...-.++.+++++|+.+-.........+..++.. .. +|+.||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~----ad-~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF----AD-RILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH----CC-EEEEecccC
Confidence 45678899999653322211 1233578999999975543322111333344433 33 456799996
No 366
>PRK14974 cell division protein FtsY; Provisional
Probab=98.23 E-value=2.4e-06 Score=64.05 Aligned_cols=91 Identities=16% Similarity=0.108 Sum_probs=50.2
Q ss_pred EEEEEEEeCCCCccccc-cc---ccc--ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccc
Q 030961 55 TVNLGLWDTAGQEDYNR-LR---PLS--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~-~~---~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~ 128 (168)
.+.+.++||+|...... +. ... ....+..++|.|+......... ...+.... + .--++.||.|....-
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~----a~~f~~~~-~-~~giIlTKlD~~~~~ 295 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ----AREFNEAV-G-IDGVILTKVDADAKG 295 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH----HHHHHhcC-C-CCEEEEeeecCCCCc
Confidence 35688999999753211 11 111 1257888999998765432221 22222211 2 345667999987542
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCccCC
Q 030961 129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
-.+...+...+. |+.+++ +|++|
T Consensus 296 --------------G~~ls~~~~~~~-Pi~~i~--~Gq~v 318 (336)
T PRK14974 296 --------------GAALSIAYVIGK-PILFLG--VGQGY 318 (336)
T ss_pred --------------cHHHHHHHHHCc-CEEEEe--CCCCh
Confidence 223445555676 676666 56653
No 367
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.22 E-value=3.4e-06 Score=60.79 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNK 32 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~ 32 (168)
.++++|.+|+|||||+|++.+..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 67999999999999999999753
No 368
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.19 E-value=3.4e-06 Score=64.12 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~ 32 (168)
.++.++|.+|+|||||+|++.+..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999999999753
No 369
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.18 E-value=1e-05 Score=60.81 Aligned_cols=118 Identities=22% Similarity=0.250 Sum_probs=64.0
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCC------------------CCCCceeec---eeE--EE--------------
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPT------------------DYIPTVFDN---FSA--NV-------------- 49 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~------------------~~~~~~~~~---~~~--~~-------------- 49 (168)
.+.++.++|+-.+|||||+-.|.++.+.. -.....+.+ |.. .+
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 47899999999999999987666543211 011111111 000 00
Q ss_pred EE-CCeEEEEEEEeCCCCccccccccccc--cCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccc
Q 030961 50 VA-EGTTVNLGLWDTAGQEDYNRLRPLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (168)
Q Consensus 50 ~~-~~~~~~~~i~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~ 126 (168)
.+ .+..--+.++|..|++.|....-.-+ .-.|...+++-++...- .-. ++.+..... -.+|+.+|.+|+|..+
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-GmT-KEHLgLALa--L~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-GMT-KEHLGLALA--LHVPVFVVVTKIDMCP 287 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-ecc-HHhhhhhhh--hcCcEEEEEEeeccCc
Confidence 01 12223467899999999865332222 22455556655443221 111 222222222 2588999999999887
Q ss_pred cc
Q 030961 127 DK 128 (168)
Q Consensus 127 ~~ 128 (168)
.+
T Consensus 288 AN 289 (641)
T KOG0463|consen 288 AN 289 (641)
T ss_pred HH
Confidence 75
No 370
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.16 E-value=2.7e-05 Score=58.14 Aligned_cols=137 Identities=14% Similarity=0.106 Sum_probs=73.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC----C-----CCCCCCc-----e---eeceeEEEEE------------------
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNK----F-----PTDYIPT-----V---FDNFSANVVA------------------ 51 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~----~-----~~~~~~~-----~---~~~~~~~~~~------------------ 51 (168)
..-.++++|++|+||||++..+...- . ....... . .......+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999875421 0 0011000 0 0000001100
Q ss_pred CCeEEEEEEEeCCCCccccc--------ccc----ccccCCcEEEEEEeCCChh-HHHHHHHhHHHHHchhCCCCcEEEE
Q 030961 52 EGTTVNLGLWDTAGQEDYNR--------LRP----LSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLV 118 (168)
Q Consensus 52 ~~~~~~~~i~D~~g~~~~~~--------~~~----~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~p~ivv 118 (168)
....+.+.++||||...... +.. ..-...+..++|+|++.+. .+..+ ..+.+. -.+.-++
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a-----~~f~~~--~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA-----KAFHEA--VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH-----HHHHhh--CCCCEEE
Confidence 12346789999999743221 110 0112467889999988543 23222 222221 1244677
Q ss_pred eeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCccC
Q 030961 119 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQV 167 (168)
Q Consensus 119 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (168)
.||.|....- -.+...+...+. |+..++ +|++
T Consensus 266 lTKlD~t~~~--------------G~~l~~~~~~~~-Pi~~v~--~Gq~ 297 (318)
T PRK10416 266 LTKLDGTAKG--------------GVVFAIADELGI-PIKFIG--VGEG 297 (318)
T ss_pred EECCCCCCCc--------------cHHHHHHHHHCC-CEEEEe--CCCC
Confidence 8999965432 234555566777 777776 5554
No 371
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.16 E-value=4.8e-06 Score=56.72 Aligned_cols=76 Identities=17% Similarity=0.071 Sum_probs=48.0
Q ss_pred cccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhC
Q 030961 74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (168)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (168)
...+.++|.+++|+|++++..... ..+...+ .+.|.++|+||+|+..... ..+..++....+
T Consensus 14 ~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~----~~k~~ilVlNK~Dl~~~~~------------~~~~~~~~~~~~ 75 (171)
T cd01856 14 KEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL----GNKPRIIVLNKADLADPKK------------TKKWLKYFESKG 75 (171)
T ss_pred HHHHhhCCEEEEEeeccCccCcCC--hhhHhHh----cCCCEEEEEehhhcCChHH------------HHHHHHHHHhcC
Confidence 445678999999999987654332 2222222 3579999999999953321 111112222233
Q ss_pred CcEEEEecccCccCC
Q 030961 154 ASYYIECSSKTQQVC 168 (168)
Q Consensus 154 ~~~~~~~Sa~~~~~i 168 (168)
. .++.+||++++|+
T Consensus 76 ~-~vi~iSa~~~~gi 89 (171)
T cd01856 76 E-KVLFVNAKSGKGV 89 (171)
T ss_pred C-eEEEEECCCcccH
Confidence 3 6789999999875
No 372
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.16 E-value=8.8e-06 Score=59.51 Aligned_cols=90 Identities=13% Similarity=0.046 Sum_probs=50.9
Q ss_pred eEEEEEEEeCCCCccccccc------------cccccCCcEEEEEEeCCChh-HHHHHHHhHHHHHchhCCCCcEEEEee
Q 030961 54 TTVNLGLWDTAGQEDYNRLR------------PLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGT 120 (168)
Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~------------~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~p~ivv~n 120 (168)
..+.+.++||+|........ ...-..++..++|+|++... .+... ..+.+.. .+--++.|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~-----~~f~~~~--~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA-----KVFNEAV--GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH-----HHHHhhC--CCCEEEEE
Confidence 34788899999975432111 01112488999999987543 23222 2222211 24467789
Q ss_pred CCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCccC
Q 030961 121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQV 167 (168)
Q Consensus 121 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (168)
|.|....- -.+.......+. |+.+++ +|++
T Consensus 226 KlDe~~~~--------------G~~l~~~~~~~~-Pi~~~~--~Gq~ 255 (272)
T TIGR00064 226 KLDGTAKG--------------GIILSIAYELKL-PIKFIG--VGEK 255 (272)
T ss_pred ccCCCCCc--------------cHHHHHHHHHCc-CEEEEe--CCCC
Confidence 99986542 234445556676 666665 4443
No 373
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.14 E-value=0.00012 Score=56.06 Aligned_cols=141 Identities=20% Similarity=0.252 Sum_probs=88.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-----------------CCCC----CCCceeece----eEEEEE-CCeEEEEEEE
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNK-----------------FPTD----YIPTVFDNF----SANVVA-EGTTVNLGLW 61 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~-----------------~~~~----~~~~~~~~~----~~~~~~-~~~~~~~~i~ 61 (168)
-+=+.+||+-..|||||+.||...- ++.+ +..|..-.| ...+.+ ++..++++++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 4558899999999999999997531 1111 111111112 223444 5778999999
Q ss_pred eCCCC-------------ccc------cccccc----------cccCCc--EEEEEEeCC----ChhHHHHHHHhHHHHH
Q 030961 62 DTAGQ-------------EDY------NRLRPL----------SYRGAD--VFVLAFSLV----SRASYENVLKKWIPEL 106 (168)
Q Consensus 62 D~~g~-------------~~~------~~~~~~----------~~~~~~--~~i~v~d~~----~~~s~~~~~~~~~~~l 106 (168)
|+.|- +++ ..-.+. .+.+=. ++++.-|.+ .++++..+-++...+|
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 99871 111 000000 011112 555544543 3666666667888888
Q ss_pred chhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 107 QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 107 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
+.. +.|.+|+.|-.+-..+ .+.+-+.++...|+. +.+.+++.
T Consensus 177 k~i--gKPFvillNs~~P~s~------------et~~L~~eL~ekY~v-pVlpvnc~ 218 (492)
T PF09547_consen 177 KEI--GKPFVILLNSTKPYSE------------ETQELAEELEEKYDV-PVLPVNCE 218 (492)
T ss_pred HHh--CCCEEEEEeCCCCCCH------------HHHHHHHHHHHHhCC-cEEEeehH
Confidence 885 5999999998875544 456677888889998 88887764
No 374
>PRK00098 GTPase RsgA; Reviewed
Probab=98.13 E-value=4.1e-06 Score=62.09 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNK 32 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~ 32 (168)
.++++|.+|+|||||+|.+.+..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999998754
No 375
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.12 E-value=3.1e-06 Score=61.91 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-.+++|++|+|||||+|+|...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 4689999999999999999863
No 376
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.09 E-value=1e-05 Score=59.40 Aligned_cols=76 Identities=16% Similarity=0.044 Sum_probs=48.8
Q ss_pred cccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhC
Q 030961 74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (168)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (168)
...+..+|++++|+|+.++.+... ..+.+.+ .+.|+++|.||+|+.+... .......+ ...+
T Consensus 16 ~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~-----------~~~~~~~~-~~~~ 77 (276)
T TIGR03596 16 KEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAV-----------TKQWLKYF-EEKG 77 (276)
T ss_pred HHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHH-----------HHHHHHHH-HHcC
Confidence 445778999999999987755433 2233333 2579999999999954321 11111222 2234
Q ss_pred CcEEEEecccCccCC
Q 030961 154 ASYYIECSSKTQQVC 168 (168)
Q Consensus 154 ~~~~~~~Sa~~~~~i 168 (168)
. +++.+||+++.|+
T Consensus 78 ~-~vi~iSa~~~~gi 91 (276)
T TIGR03596 78 I-KALAINAKKGKGV 91 (276)
T ss_pred C-eEEEEECCCcccH
Confidence 4 7889999999874
No 377
>PRK13796 GTPase YqeH; Provisional
Probab=98.08 E-value=7.7e-06 Score=62.27 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++.++|.+|+|||||+|+|+..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh
Confidence 47899999999999999999864
No 378
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.07 E-value=1.7e-05 Score=61.21 Aligned_cols=67 Identities=13% Similarity=0.024 Sum_probs=39.3
Q ss_pred EEEEEEEeCCCCccccccccc------cccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 55 TVNLGLWDTAGQEDYNRLRPL------SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
.+.+.++||+|........-. .....+-+++|+|+.-....... ...+.+. -.+--++.||.|....
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~----a~~F~~~--~~~~g~IlTKlD~~ar 254 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ----AKAFKDS--VDVGSVIITKLDGHAK 254 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH----HHHHHhc--cCCcEEEEECccCCCC
Confidence 578899999996433211111 12357789999998755433322 2333321 1345677899998644
No 379
>PRK01889 GTPase RsgA; Reviewed
Probab=98.03 E-value=2.1e-05 Score=59.69 Aligned_cols=76 Identities=22% Similarity=0.222 Sum_probs=50.9
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcE
Q 030961 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (168)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (168)
..++|.+++|+++..+.+...+ +.++..+.. .+++.+||+||+|+.+... ...+....+ ..+. +
T Consensus 110 aANvD~vliV~s~~p~~~~~~l-dr~L~~a~~--~~i~piIVLNK~DL~~~~~----------~~~~~~~~~--~~g~-~ 173 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRI-ERYLALAWE--SGAEPVIVLTKADLCEDAE----------EKIAEVEAL--APGV-P 173 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHH-HHHHHHHHH--cCCCEEEEEEChhcCCCHH----------HHHHHHHHh--CCCC-c
Confidence 5789999999999655555444 666666655 4678899999999965411 011222222 2344 7
Q ss_pred EEEecccCccCC
Q 030961 157 YIECSSKTQQVC 168 (168)
Q Consensus 157 ~~~~Sa~~~~~i 168 (168)
++.+|+++++|+
T Consensus 174 Vi~vSa~~g~gl 185 (356)
T PRK01889 174 VLAVSALDGEGL 185 (356)
T ss_pred EEEEECCCCccH
Confidence 899999999874
No 380
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.01 E-value=2.3e-05 Score=42.87 Aligned_cols=43 Identities=26% Similarity=0.350 Sum_probs=30.5
Q ss_pred CcEEEEEEeCCC--hhHHHHHHHhHHHHHchhCCCCcEEEEeeCCc
Q 030961 80 ADVFVLAFSLVS--RASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123 (168)
Q Consensus 80 ~~~~i~v~d~~~--~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D 123 (168)
.++++|++|.+. +-++++- ..+++.++...++.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence 678999999875 4567765 678888888888999999999998
No 381
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.01 E-value=1.5e-05 Score=58.77 Aligned_cols=77 Identities=19% Similarity=0.093 Sum_probs=49.3
Q ss_pred ccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHh
Q 030961 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 152 (168)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (168)
....+..+|++++|+|+.++.+... ..+.+.+. +.|+++|.||+|+.+... .+...++.+..
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~----~kp~iiVlNK~DL~~~~~------------~~~~~~~~~~~ 79 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG----NKPRLLILNKSDLADPEV------------TKKWIEYFEEQ 79 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC----CCCEEEEEEchhcCCHHH------------HHHHHHHHHHc
Confidence 3455778999999999987765433 22323332 589999999999853311 11122222333
Q ss_pred CCcEEEEecccCccCC
Q 030961 153 GASYYIECSSKTQQVC 168 (168)
Q Consensus 153 ~~~~~~~~Sa~~~~~i 168 (168)
+. +++.+||+++.|+
T Consensus 80 ~~-~vi~vSa~~~~gi 94 (287)
T PRK09563 80 GI-KALAINAKKGQGV 94 (287)
T ss_pred CC-eEEEEECCCcccH
Confidence 44 7889999999874
No 382
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.98 E-value=1e-05 Score=62.69 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=37.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeceeEEEEECCeEEEEEEEeCCCC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 66 (168)
.+.|.+||-|||||||+||.|.+.+.... ..|.-+-.| .++.+.. .+.+.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHF-QTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHF-QTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCccee-EEEEcCC---CceecCCCCc
Confidence 68899999999999999999999875433 222222222 2332322 3667999995
No 383
>PRK13796 GTPase YqeH; Provisional
Probab=97.98 E-value=2.8e-05 Score=59.28 Aligned_cols=74 Identities=24% Similarity=0.372 Sum_probs=48.1
Q ss_pred cCCc-EEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHH----HHHHHHHh
Q 030961 78 RGAD-VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ----GEELRKQI 152 (168)
Q Consensus 78 ~~~~-~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 152 (168)
..++ .+++|+|+.+.. ..|...+.+...+.|+++|+||+|+.+.. ...++ ...+++..
T Consensus 67 ~~~~~lIv~VVD~~D~~------~s~~~~L~~~~~~kpviLViNK~DLl~~~-----------~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN------GSWIPGLHRFVGNNPVLLVGNKADLLPKS-----------VKKNKVKNWLRQEAKEL 129 (365)
T ss_pred cccCcEEEEEEECccCC------CchhHHHHHHhCCCCEEEEEEchhhCCCc-----------cCHHHHHHHHHHHHHhc
Confidence 4445 899999987743 22344444444468999999999996432 22223 33345555
Q ss_pred CCc--EEEEecccCccCC
Q 030961 153 GAS--YYIECSSKTQQVC 168 (168)
Q Consensus 153 ~~~--~~~~~Sa~~~~~i 168 (168)
+.. .++.+||+++.|+
T Consensus 130 g~~~~~v~~vSAk~g~gI 147 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGI 147 (365)
T ss_pred CCCcCcEEEEECCCCCCH
Confidence 642 5789999999885
No 384
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=2.1e-06 Score=65.17 Aligned_cols=118 Identities=18% Similarity=0.079 Sum_probs=85.8
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC--CCC---CCC-Ccee----------ece-eEEEEECCeEEEEEEEeCCCCccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNK--FPT---DYI-PTVF----------DNF-SANVVAEGTTVNLGLWDTAGQEDY 69 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~--~~~---~~~-~~~~----------~~~-~~~~~~~~~~~~~~i~D~~g~~~~ 69 (168)
+.-+|.++..-.+||||...|++.-. ... ..+ .|.+ ... +..+..+.++.++.++||||+-.|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 45578999999999999999976421 100 001 1111 111 223556888899999999999999
Q ss_pred cccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccc
Q 030961 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (168)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~ 128 (168)
+-..+..++--|+++.|||++..-..+.+ -.|.+.=+ -++|-..++||+|....+
T Consensus 116 ~leverclrvldgavav~dasagve~qtl-tvwrqadk---~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQADK---FKIPAHCFINKMDKLAAN 170 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCccccee-eeehhccc---cCCchhhhhhhhhhhhhh
Confidence 99889999999999999999887766665 45654333 268999999999988664
No 385
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.95 E-value=4.9e-05 Score=57.82 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
-.++++|++|+||||++.+|..
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999864
No 386
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=5.8e-05 Score=54.63 Aligned_cols=116 Identities=18% Similarity=0.229 Sum_probs=69.1
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc----eeece-eEEEEECCeEEEEEEEeCCCC-------cccccccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT----VFDNF-SANVVAEGTTVNLGLWDTAGQ-------EDYNRLRP 74 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~i~D~~g~-------~~~~~~~~ 74 (168)
-.++|+.||..|.|||||+..|++-.|.....+. ..... ...+.-.+...++.+.||.|- +.|..+..
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 3689999999999999999999998875443322 22111 112233567788999999982 12221100
Q ss_pred --------------------cccc--CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccc
Q 030961 75 --------------------LSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (168)
Q Consensus 75 --------------------~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~ 126 (168)
..+. ..+++++.+.. -+.++..+.--.++.+.. .+.+|-++-|+|...
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~P-TGH~LKslDLvtmk~Lds---kVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISP-TGHSLKSLDLVTMKKLDS---KVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecC-CCcchhHHHHHHHHHHhh---hhhhHHHHHHhhhhh
Confidence 0112 34555555553 345565554444555554 456666677888643
No 387
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.92 E-value=7.2e-05 Score=49.20 Aligned_cols=108 Identities=15% Similarity=0.067 Sum_probs=62.9
Q ss_pred EEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCC
Q 030961 12 VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS 91 (168)
Q Consensus 12 ~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 91 (168)
+.-|.+|+|||++...+... +......+.-.+.. .......+.+.++|+|+... ......+..+|.++++.+. +
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~-~~~~~~~~~~vd~D--~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~-~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALA-LAKLGKRVLLLDAD--LGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTP-E 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHH-HHHCCCcEEEEECC--CCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCC-C
Confidence 45578999999998765432 11111111111110 00011127789999997532 2234568889999999886 4
Q ss_pred hhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccc
Q 030961 92 RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (168)
Q Consensus 92 ~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~ 126 (168)
..++... ...++.+.+.....++.++.|+++...
T Consensus 78 ~~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~~~ 111 (139)
T cd02038 78 PTSITDA-YALIKKLAKQLRVLNFRVVVNRAESPK 111 (139)
T ss_pred hhHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCCHH
Confidence 5556554 445555554434567789999997543
No 388
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.89 E-value=0.00015 Score=57.11 Aligned_cols=71 Identities=17% Similarity=0.110 Sum_probs=43.8
Q ss_pred EEEEEEeCCCCc-------------cccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeC
Q 030961 56 VNLGLWDTAGQE-------------DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTK 121 (168)
Q Consensus 56 ~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK 121 (168)
.++.+.|.||.. ....+...++.+.+++|+|+--.+-+ ..+...-+.+.+.- .+...|+|.+|
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVD---AERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVD---AERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcc---hhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 346789999932 23446677788999999998532211 11111222333322 35778899999
Q ss_pred Ccccccch
Q 030961 122 LDLREDKH 129 (168)
Q Consensus 122 ~D~~~~~~ 129 (168)
.|+...+-
T Consensus 489 VDlAEknl 496 (980)
T KOG0447|consen 489 VDLAEKNV 496 (980)
T ss_pred cchhhhcc
Confidence 99987643
No 389
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=5.5e-05 Score=64.67 Aligned_cols=115 Identities=25% Similarity=0.175 Sum_probs=61.1
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeceeEEEEEC-CeEEEEEEEeCCCCccc--------ccccccc---
Q 030961 11 CVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAE-GTTVNLGLWDTAGQEDY--------NRLRPLS--- 76 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~--------~~~~~~~--- 76 (168)
.+|||++|+||||++..- +..|. ....... ..-..+...+ .-+-+-.++||.|...- ...|..+
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~-~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALG-LAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhcccc-ccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 589999999999999532 22221 1111000 0000011111 11233456888884321 2234433
Q ss_pred ------ccCCcEEEEEEeCCCh-----hHHHHH---HHhHHHHHchhC-CCCcEEEEeeCCccccc
Q 030961 77 ------YRGADVFVLAFSLVSR-----ASYENV---LKKWIPELQHYS-PGVPVVLVGTKLDLRED 127 (168)
Q Consensus 77 ------~~~~~~~i~v~d~~~~-----~s~~~~---~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~ 127 (168)
.+..+|+++.+|+++- ...+.. ...-++++.... ...|+.+++||.|+...
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 3458999999997542 111111 122233333333 57999999999999875
No 390
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=1.7e-05 Score=62.77 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=79.0
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC-----CCCCCC-Ccee----eceeEEE-------EECCeEEEEEEEeCCCCccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNK-----FPTDYI-PTVF----DNFSANV-------VAEGTTVNLGLWDTAGQEDY 69 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~-----~~~~~~-~~~~----~~~~~~~-------~~~~~~~~~~i~D~~g~~~~ 69 (168)
+.-+|-++-.-.+||||+-.|.+... +..... .+.- .+..+.+ ......+.+.++||||+-.|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 34457777788999999999876421 111100 1110 0011111 22344788999999999999
Q ss_pred cccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
.-..+..++--|++++++++..+-..+.. .-|.+ +.+ .++|.+...||.|.-..
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ-~~r--y~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQ-MKR--YNVPRICFINKMDRMGA 171 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhH-HHHHH-HHh--cCCCeEEEEehhhhcCC
Confidence 99999999999999999998776554443 34444 334 36999999999997654
No 391
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.78 E-value=4e-05 Score=59.55 Aligned_cols=65 Identities=18% Similarity=0.151 Sum_probs=37.5
Q ss_pred EEEEEEeCCCCccccccc-----c-ccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcE-EEEeeCCccccc
Q 030961 56 VNLGLWDTAGQEDYNRLR-----P-LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLRED 127 (168)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~-----~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~-ivv~nK~D~~~~ 127 (168)
..+.++||+|........ . ..+..++.+++|+|++.... . ......+.+ ..++ -+|.||.|....
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~---a-v~~a~~F~~---~l~i~gvIlTKlD~~a~ 247 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQ---A-KNQAKAFHE---AVGIGGIIITKLDGTAK 247 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHH---H-HHHHHHHHh---cCCCCEEEEecccCCCc
Confidence 478899999975432111 0 11336788999999876532 1 122233332 2333 466799997643
No 392
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.74 E-value=2.6e-05 Score=54.22 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.+..+++|+.||||||+++.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 56789999999999999998754
No 393
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=5.9e-05 Score=57.15 Aligned_cols=160 Identities=13% Similarity=0.089 Sum_probs=92.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC--CCC---------------C------CCCceeece--eEEEE-----ECCe
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK--FPT---------------D------YIPTVFDNF--SANVV-----AEGT 54 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~--~~~---------------~------~~~~~~~~~--~~~~~-----~~~~ 54 (168)
+...++++|+|.-.+||||+-..+.... ... . +-.+-..+. .+++. ..-.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 4567899999999999999987765421 000 0 000000111 11111 1223
Q ss_pred EEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChh---HHHHH-HHhHHHHHchhCCCCcEEEEeeCCcccccchh
Q 030961 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYENV-LKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 130 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~-~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~ 130 (168)
..++.+.|.||+..|-...-.-..+||..++|+++...+ .|+.- ...=..++.+...-..+|++.||.|-...+ +
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvn-W 234 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN-W 234 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccC-c
Confidence 456788999999988776666778899999999874322 12211 000111222222346789999999976432 1
Q ss_pred hhcCCCCCcccHHHHHHHHHHhCC-----cEEEEecccCccCC
Q 030961 131 LADHPGLVPVTTAQGEELRKQIGA-----SYYIECSSKTQQVC 168 (168)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i 168 (168)
..+ ......+....+.+..|. +.|+++|..+|.|+
T Consensus 235 s~e---Ry~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~ 274 (501)
T KOG0459|consen 235 SNE---RYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANV 274 (501)
T ss_pred chh---hHHHHHHHHHHHHHHhcccCCCCceeeecccccccch
Confidence 111 011345556666664433 57999999999875
No 394
>PRK08118 topology modulation protein; Reviewed
Probab=97.71 E-value=3.2e-05 Score=52.49 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.||+|+|++|||||||..++...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988753
No 395
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.70 E-value=3e-05 Score=49.48 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.|+|.|+|||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 396
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=5.3e-06 Score=59.21 Aligned_cols=147 Identities=19% Similarity=0.188 Sum_probs=84.5
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECC--eEEEEEEEeCCCCcccccccccc-----ccC
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEG--TTVNLGLWDTAGQEDYNRLRPLS-----YRG 79 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~-----~~~ 79 (168)
....|.+.|+.+ ||++|++++...- ....++...+|+-...+.+ ..--..+|+.+|......+.... ++.
T Consensus 44 ~E~~I~~~Gn~~--~tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~ 120 (363)
T KOG3929|consen 44 FEFFIGSKGNGG--KTTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRT 120 (363)
T ss_pred ceeEEEEecCCc--eeEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhh
Confidence 456778887655 4899999886542 2335666666643322322 33345679999987665543333 223
Q ss_pred CcEEEEEEeCCChhHHHHHHHhHHHHHchh------------------------------C--------CCCcEEEEeeC
Q 030961 80 ADVFVLAFSLVSRASYENVLKKWIPELQHY------------------------------S--------PGVPVVLVGTK 121 (168)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~------------------------------~--------~~~p~ivv~nK 121 (168)
+ .+|++.|++++..+...++..++.+.+. . -.+|++||+.|
T Consensus 121 ~-slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsK 199 (363)
T KOG3929|consen 121 F-SLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSK 199 (363)
T ss_pred h-hheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccc
Confidence 3 6778899999876654433332222210 0 02799999999
Q ss_pred CcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 122 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
.|.-...++. .+.-...-++.++..||. ..+..|++
T Consensus 200 YDvFq~Fese-----kRkH~C~~LRf~Ah~yGa-aLlmfSsk 235 (363)
T KOG3929|consen 200 YDVFQDFESE-----KRKHICKTLRFVAHYYGA-ALLMFSSK 235 (363)
T ss_pred hhhhccccHH-----HHHHHHHHHHHHHHHhhh-HHHHHHHh
Confidence 9987664311 111223335566667776 44444544
No 397
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.68 E-value=3.9e-05 Score=52.58 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.+|+++|+|||||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 398
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.68 E-value=0.00027 Score=53.88 Aligned_cols=66 Identities=26% Similarity=0.330 Sum_probs=36.8
Q ss_pred EEEEEEEeCCCCcccccccccc----cc--CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcE-EEEeeCCccccc
Q 030961 55 TVNLGLWDTAGQEDYNRLRPLS----YR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLRED 127 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~----~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~-ivv~nK~D~~~~ 127 (168)
.+.+.++||.|...+..+.-.. +. ...-+.+|++++... ..+ +..+..+.. .|+ -+++||.|....
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dl-kei~~~f~~----~~i~~~I~TKlDET~s 353 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDL-KEIIKQFSL----FPIDGLIFTKLDETTS 353 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHH-HHHHHHhcc----CCcceeEEEcccccCc
Confidence 5678899999976654432222 11 123455566665433 222 445555554 333 356799998654
No 399
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.00026 Score=56.04 Aligned_cols=23 Identities=22% Similarity=0.094 Sum_probs=19.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-.++|+|++|+||||++..|..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988764
No 400
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.64 E-value=8.2e-05 Score=54.56 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=37.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC------CCCceeeceeEEEEECCeEEEEEEEeCCCC
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTD------YIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 66 (168)
...+.++|+|-||+|||||+|.+...+.... ..+..+......+.+.+.. .+.+.||||-
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 3578999999999999999998865443221 1122222223333443322 2556999994
No 401
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.00028 Score=54.59 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-+++++|+.|+||||++.++.+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999997754
No 402
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.63 E-value=0.00016 Score=55.64 Aligned_cols=72 Identities=19% Similarity=0.283 Sum_probs=52.2
Q ss_pred EEEEEEeCCCCccccccccccccCCcEEEEEEeCCCh----------hHHHHHHHhHHHHHchh-C-CCCcEEEEeeCCc
Q 030961 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHY-S-PGVPVVLVGTKLD 123 (168)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~l~~~-~-~~~p~ivv~nK~D 123 (168)
..+.++|++|+..-+.-|...+.++++++||+++++= ..+.+.+ .++..+... . .+.|++|++||.|
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl-~lF~~i~~~~~~~~~~iil~lnK~D 314 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESL-NLFESICNNPWFKNTPIILFLNKID 314 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHH-HHHHHHHTSGGGTTSEEEEEEE-HH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHH-HHHHHHHhCcccccCceEEeeecHH
Confidence 4568899999998889999999999999999997531 2244442 333333332 2 6899999999999
Q ss_pred ccccc
Q 030961 124 LREDK 128 (168)
Q Consensus 124 ~~~~~ 128 (168)
+-.+.
T Consensus 315 ~f~~K 319 (389)
T PF00503_consen 315 LFEEK 319 (389)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 403
>PRK07261 topology modulation protein; Provisional
Probab=97.61 E-value=5.6e-05 Score=51.51 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
+|+++|.+|||||||...+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 404
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.60 E-value=4.9e-05 Score=49.90 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q 030961 11 CVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~ 30 (168)
|+++|+|||||||++.++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 405
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.59 E-value=0.00018 Score=55.88 Aligned_cols=86 Identities=16% Similarity=0.082 Sum_probs=47.8
Q ss_pred EEEEEEEeCCCCccccccccc------cccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccc
Q 030961 55 TVNLGLWDTAGQEDYNRLRPL------SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~ 128 (168)
.+.+.++||+|........-. .....+.+++|+|+...... ......+.... ++ .=++.||.|.....
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~----~~~a~~f~~~v-~i-~giIlTKlD~~~~~ 255 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDA----VNTAKTFNERL-GL-TGVVLTKLDGDARG 255 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHH----HHHHHHHHhhC-CC-CEEEEeCccCcccc
Confidence 467889999996432211001 12357888999998754322 22333443221 22 24668999975432
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
-.+...+...+. |+.+++
T Consensus 256 --------------G~~lsi~~~~~~-PI~fi~ 273 (428)
T TIGR00959 256 --------------GAALSVRSVTGK-PIKFIG 273 (428)
T ss_pred --------------cHHHHHHHHHCc-CEEEEe
Confidence 225666666776 555443
No 406
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=4.2e-05 Score=57.69 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=53.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC----CCCC-----CCCC-cee-----------eceeEE------E--------
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSN----KFPT-----DYIP-TVF-----------DNFSAN------V-------- 49 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~----~~~~-----~~~~-~~~-----------~~~~~~------~-------- 49 (168)
+.+.--|+++|..|+||||.+.+|..- .+.. ++.. ... ..+... .
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence 345567999999999999999877531 1110 0000 000 000000 0
Q ss_pred EECCeEEEEEEEeCCCCccccc-cccc-----cccCCcEEEEEEeCCChhHHHHH
Q 030961 50 VAEGTTVNLGLWDTAGQEDYNR-LRPL-----SYRGADVFVLAFSLVSRASYENV 98 (168)
Q Consensus 50 ~~~~~~~~~~i~D~~g~~~~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~ 98 (168)
....+.+.+.|.||+|...-.. +.+. ..-..|-++||.|++-....+..
T Consensus 178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Q 232 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQ 232 (483)
T ss_pred HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHH
Confidence 0133568899999999543211 1111 13358999999999877665544
No 407
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.54 E-value=0.00012 Score=50.61 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.=|+++|++|||||||+++|+..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 44899999999999999999864
No 408
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.52 E-value=0.0025 Score=42.70 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=35.1
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCC
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTA 64 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 64 (168)
..+||.+-|.||+||||++.++... +.... ...+-.+...+.-++...-+.+.|+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~-L~~~g-~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEK-LREKG-YKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHH-HHhcC-ceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 4689999999999999999988642 10110 12222233444455666666667766
No 409
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.50 E-value=0.00089 Score=48.21 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=57.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEEC----CeEEEEEEEeCCCCccccc-------ccccc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAE----GTTVNLGLWDTAGQEDYNR-------LRPLS 76 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~D~~g~~~~~~-------~~~~~ 76 (168)
.-+|-++|-|.+||||++..+.+..- +....+++.-..+. -..-++++.|.||.-+-.. ..-..
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s-----~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviav 133 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFS-----EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAV 133 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCC-----ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEE
Confidence 34899999999999999998876431 11111222222232 2345677799999543211 12234
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHh
Q 030961 77 YRGADVFVLAFSLVSRASYENVLKK 101 (168)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~ 101 (168)
.+.|+.+++|.|+-.+-+-..+.+.
T Consensus 134 artcnli~~vld~~kp~~hk~~ie~ 158 (358)
T KOG1487|consen 134 ARTCNLIFIVLDVLKPLSHKKIIEK 158 (358)
T ss_pred eecccEEEEEeeccCcccHHHHHHH
Confidence 5789999999999988887766443
No 410
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.49 E-value=0.00016 Score=50.79 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=21.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.+..-|+++|++|||||||+++|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34566889999999999999999754
No 411
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.49 E-value=7.9e-05 Score=50.85 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNK 32 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~ 32 (168)
..-+++.|++|+||||++++|+...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4558999999999999999998765
No 412
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00018 Score=56.20 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=75.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC-CCCC-----CCC--CceeeceeEEE-----------------------EECC
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSN-KFPT-----DYI--PTVFDNFSANV-----------------------VAEG 53 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~-~~~~-----~~~--~~~~~~~~~~~-----------------------~~~~ 53 (168)
+..+-+..++-+-..|||||...|+.. .... ..- -|-.++....+ ..++
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 344567889999999999999988742 1110 000 00000000001 1255
Q ss_pred eEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccc
Q 030961 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125 (168)
Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~ 125 (168)
..+-+.++|.||+-.|.+.....++-.|+.++|+|..+.--.+.. --+-+.+.+ .+.-+++.||.|..
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~E---RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAE---RIKPVLVMNKMDRA 163 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHh---hccceEEeehhhHH
Confidence 678889999999999999999999999999999998776544432 222333333 34455667999954
No 413
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.47 E-value=0.00013 Score=41.93 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030961 11 CVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~ 31 (168)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999988764
No 414
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.46 E-value=0.00016 Score=50.81 Aligned_cols=27 Identities=19% Similarity=0.037 Sum_probs=23.1
Q ss_pred CcceeeEEEEECCCCCCHHHHHHHHhc
Q 030961 4 SASRFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 4 ~~~~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.+.+..-|.++|++|||||||++.+.+
T Consensus 2 ~~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 2 DKPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 455567799999999999999999875
No 415
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.45 E-value=0.00068 Score=42.03 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=48.9
Q ss_pred EEEEC-CCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeC
Q 030961 11 CVTVG-DGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (168)
Q Consensus 11 i~vvG-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (168)
|++.| ..|+||||+...+...- .....+..-.+ .+ ..+.+.++|+|+..... ....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~-~~~~~~vl~~d------~d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAAL-ARRGKRVLLID------LD-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH-HhCCCcEEEEe------CC-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence 56666 67999999987664321 11111111111 11 11778899999865322 22567789999999885
Q ss_pred CChhHHHHHHHhHHH
Q 030961 90 VSRASYENVLKKWIP 104 (168)
Q Consensus 90 ~~~~s~~~~~~~~~~ 104 (168)
+..++..+ ..+++
T Consensus 72 -~~~s~~~~-~~~~~ 84 (104)
T cd02042 72 -SPLDLDGL-EKLLE 84 (104)
T ss_pred -CHHHHHHH-HHHHH
Confidence 55666665 55554
No 416
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.45 E-value=0.00074 Score=43.81 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=21.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNK 32 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~ 32 (168)
...+++.|++|+|||++++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4468999999999999999988753
No 417
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.45 E-value=3.4e-05 Score=54.41 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=42.3
Q ss_pred EEEEEEEeCCCCccccccccccccCCcEEEEEEeCC----------ChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCC
Q 030961 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPELQHYS--PGVPVVLVGTKL 122 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~ 122 (168)
.+.+++.|.+|+..-+.-|-+.+.++-.++|++..+ +....++. ..++..+-.+. .+.+++++.||.
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeES-kALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHH-HHHHHHHhccccccCCceEEEechh
Confidence 344566777777665555555555554444443321 22222222 33444444433 578999999999
Q ss_pred cccccch
Q 030961 123 DLREDKH 129 (168)
Q Consensus 123 D~~~~~~ 129 (168)
|+..+..
T Consensus 277 DlLEekI 283 (359)
T KOG0085|consen 277 DLLEEKI 283 (359)
T ss_pred hhhhhhh
Confidence 9987743
No 418
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.44 E-value=0.0012 Score=48.63 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=54.7
Q ss_pred cccccCCcEEEEEEeCCChh-HHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHh
Q 030961 74 PLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 152 (168)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (168)
.....+.|-.++++++.+|+ +...+ +.++-.... .++..+|++||+|+..+.. ...++........
T Consensus 74 Rp~v~n~d~~iiIvs~~~P~~~~~~l-dR~Lv~ae~--~gi~pvIvlnK~DL~~~~~----------~~~~~~~~~y~~~ 140 (301)
T COG1162 74 RPPVANNDQAIIVVSLVDPDFNTNLL-DRYLVLAEA--GGIEPVIVLNKIDLLDDEE----------AAVKELLREYEDI 140 (301)
T ss_pred CCcccccceEEEEEeccCCCCCHHHH-HHHHHHHHH--cCCcEEEEEEccccCcchH----------HHHHHHHHHHHhC
Confidence 33344688888888888876 34443 555555555 4677788899999987743 2223444555567
Q ss_pred CCcEEEEecccCccCC
Q 030961 153 GASYYIECSSKTQQVC 168 (168)
Q Consensus 153 ~~~~~~~~Sa~~~~~i 168 (168)
+. +.+.+|+++++|+
T Consensus 141 gy-~v~~~s~~~~~~~ 155 (301)
T COG1162 141 GY-PVLFVSAKNGDGL 155 (301)
T ss_pred Ce-eEEEecCcCcccH
Confidence 76 7899999998764
No 419
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.43 E-value=8.6e-05 Score=50.06 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999764
No 420
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.42 E-value=0.0012 Score=39.84 Aligned_cols=68 Identities=21% Similarity=0.192 Sum_probs=42.9
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCcccccc-ccccccCCcEEEEEEeC
Q 030961 11 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-RPLSYRGADVFVLAFSL 89 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~ 89 (168)
+++.|.+|+||||+...+...-- ... .+...++ .+.++|+++....... .......++.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~-~~g--------~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALA-KRG--------KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HCC--------CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 67889999999999987765311 000 1111222 6788999987543221 13455678888888876
Q ss_pred CC
Q 030961 90 VS 91 (168)
Q Consensus 90 ~~ 91 (168)
..
T Consensus 69 ~~ 70 (99)
T cd01983 69 EA 70 (99)
T ss_pred ch
Confidence 43
No 421
>PRK06217 hypothetical protein; Validated
Probab=97.42 E-value=0.00014 Score=50.01 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 422
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.0012 Score=54.52 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
-++++|+.|+||||++.++..
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 589999999999999998874
No 423
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.0033 Score=45.12 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=83.5
Q ss_pred eeEEEEECCCCC--CHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCe----EEEEEEEeCCCCccccccccccccCCc
Q 030961 8 FIKCVTVGDGAV--GKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT----TVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (168)
Q Consensus 8 ~~~i~vvG~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (168)
..-++++|-+|+ ||-++.+||....|.......-.+++ ..-+++++ .+.+.+--.... .+... .......-
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~-hgwtid~kyysadi~lcishicde-~~lpn-~~~a~pl~ 80 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEF-HGWTIDNKYYSADINLCISHICDE-KFLPN-AEIAEPLQ 80 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceee-eceEecceeeecceeEEeecccch-hccCC-ccccccee
Confidence 345789999999 99999999988777543222221111 11122222 233333222111 11111 11122345
Q ss_pred EEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccch-------hhh--------------cC------
Q 030961 82 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH-------YLA--------------DH------ 134 (168)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~-------~~~--------------~~------ 134 (168)
+++++||.+....+..+ +.|+.-..-+. =-.++.++||.|..+..- +.. +.
T Consensus 81 a~vmvfdlse~s~l~al-qdwl~htdins-fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisete 158 (418)
T KOG4273|consen 81 AFVMVFDLSEKSGLDAL-QDWLPHTDINS-FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETE 158 (418)
T ss_pred eEEEEEeccchhhhHHH-Hhhcccccccc-chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccc
Confidence 88999999999999887 77866432211 123467899999765410 000 00
Q ss_pred -------CCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 135 -------PGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 135 -------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
+...-.....+.++|-+.++ .|++.+|-.
T Consensus 159 gssllgsedasldirga~lewc~e~~~-efieacasn 194 (418)
T KOG4273|consen 159 GSSLLGSEDASLDIRGAALEWCLEHGF-EFIEACASN 194 (418)
T ss_pred cccccccccchhhHHHHHHHHHHhcCc-eeeeecCCc
Confidence 00111234457888999998 899988843
No 424
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=4.8e-05 Score=55.77 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=81.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcC---CCCCCCCCcee--ece--eEEEEE----------------------------
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSN---KFPTDYIPTVF--DNF--SANVVA---------------------------- 51 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~---~~~~~~~~~~~--~~~--~~~~~~---------------------------- 51 (168)
-.++|.-+|+-..||||++..+.+- +|.......++ .-| .+.+..
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 4789999999999999999887653 12211111111 111 011110
Q ss_pred -CC---eEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCC--h--hHHHHHHHhHHHHHchhCCCCcEEEEeeCCc
Q 030961 52 -EG---TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS--R--ASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123 (168)
Q Consensus 52 -~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~--~--~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D 123 (168)
.+ .-..+.+.|+||++-+-..+-.-..-.|++++++..+. + .+.+.+. .-++.+ =..++++-||+|
T Consensus 117 ~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLa---aveiM~---LkhiiilQNKiD 190 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLA---AVEIMK---LKHIIILQNKID 190 (466)
T ss_pred CCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHH---HHHHhh---hceEEEEechhh
Confidence 11 11346679999998653322222223466666665543 2 2333321 111222 257889999999
Q ss_pred ccccchhhhcCCCCCcccHHHHHHHHHH---hCCcEEEEecccCccCC
Q 030961 124 LREDKHYLADHPGLVPVTTAQGEELRKQ---IGASYYIECSSKTQQVC 168 (168)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i 168 (168)
+..+.+.. ...++...|... -+. +++++||.-++||
T Consensus 191 li~e~~A~--------eq~e~I~kFi~~t~ae~a-PiiPisAQlkyNI 229 (466)
T KOG0466|consen 191 LIKESQAL--------EQHEQIQKFIQGTVAEGA-PIIPISAQLKYNI 229 (466)
T ss_pred hhhHHHHH--------HHHHHHHHHHhccccCCC-ceeeehhhhccCh
Confidence 98775411 234445555543 244 8999999988875
No 425
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.37 E-value=0.00023 Score=48.52 Aligned_cols=25 Identities=16% Similarity=0.031 Sum_probs=21.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
...-+.++|.+|||||||+.++...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4557899999999999999998753
No 426
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.36 E-value=0.0039 Score=46.77 Aligned_cols=90 Identities=17% Similarity=0.055 Sum_probs=48.1
Q ss_pred EEEEEEeCCCCcccccccc-----ccc---cCCcEEEEEEeCCChhHHHH-HHHhHHHHHchhCCCCcEEEEeeCCcccc
Q 030961 56 VNLGLWDTAGQEDYNRLRP-----LSY---RGADVFVLAFSLVSRASYEN-VLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (168)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~~-----~~~---~~~~~~i~v~d~~~~~s~~~-~~~~~~~~l~~~~~~~p~ivv~nK~D~~~ 126 (168)
....++++.|--.-.+... ..+ -..|+++.|+|+.+-..-.. ..+...+++.- -=+|++||.|+..
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-----AD~ivlNK~Dlv~ 159 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-----ADVIVLNKTDLVD 159 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-----CcEEEEecccCCC
Confidence 4455677777433211111 111 24678999999876544322 22333444433 3367789999987
Q ss_pred cchhhhcCCCCCcccHHHHHHHHHHhCC-cEEEEecc
Q 030961 127 DKHYLADHPGLVPVTTAQGEELRKQIGA-SYYIECSS 162 (168)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa 162 (168)
+.. .+..+...+..+. .+++++|.
T Consensus 160 ~~~------------l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 160 AEE------------LEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred HHH------------HHHHHHHHHHhCCCCeEEEccc
Confidence 632 3444455544443 25666554
No 427
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.34 E-value=0.00022 Score=49.90 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|++|||||||++.+-+-
T Consensus 30 vv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999988654
No 428
>PRK14530 adenylate kinase; Provisional
Probab=97.34 E-value=0.0002 Score=50.62 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
.+|+++|+|||||||+.++|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 429
>PRK03839 putative kinase; Provisional
Probab=97.33 E-value=0.0002 Score=49.09 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
+|+++|.|||||||+..++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988653
No 430
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.32 E-value=0.00024 Score=50.70 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.3
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
..++|+++|+|||||||+..++..
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 431
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.32 E-value=0.0024 Score=47.89 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
..-.++.|--|||||||+++++..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 455788899999999999999854
No 432
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.00022 Score=50.89 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030961 11 CVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~ 31 (168)
++++|++|||||||++-+.+-
T Consensus 32 vsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999988764
No 433
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.31 E-value=0.00026 Score=45.55 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~ 32 (168)
-.++++|++|+|||+++..+...-
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 468999999999999999987753
No 434
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.30 E-value=0.00023 Score=45.85 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030961 11 CVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~ 31 (168)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998764
No 435
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.30 E-value=0.00019 Score=55.03 Aligned_cols=93 Identities=17% Similarity=0.069 Sum_probs=52.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC----CCC------CCCCCce-----------eece-eE-----EEEE-------
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSN----KFP------TDYIPTV-----------FDNF-SA-----NVVA------- 51 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~----~~~------~~~~~~~-----------~~~~-~~-----~~~~------- 51 (168)
.++..|+++|..|+||||.+-+|... ... ..|-|.. +..+ .. .+.+
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 45778999999999999998876431 110 0111110 0000 00 0000
Q ss_pred -CCeEEEEEEEeCCCCcccccc-cc-----ccccCCcEEEEEEeCCChhHHHHH
Q 030961 52 -EGTTVNLGLWDTAGQEDYNRL-RP-----LSYRGADVFVLAFSLVSRASYENV 98 (168)
Q Consensus 52 -~~~~~~~~i~D~~g~~~~~~~-~~-----~~~~~~~~~i~v~d~~~~~s~~~~ 98 (168)
....+.+.|+||.|....... .. ....+.|=+++|+|+.-.....+.
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~ 231 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNT 231 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHH
Confidence 223467889999997554321 11 113468899999998776655444
No 436
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.29 E-value=0.00022 Score=50.46 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-++++|++|||||||+|-+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3799999999999999988654
No 437
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.28 E-value=0.00034 Score=53.02 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=0.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCC
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG 65 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 65 (168)
...+++.|+|-|++||||+||+|...+....-....-+.....+..+. .+.+.|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk---~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDK---KIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccC---CceeccCCc
No 438
>PRK07429 phosphoribulokinase; Provisional
Probab=97.28 E-value=0.00035 Score=52.47 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=26.6
Q ss_pred CCCCcceeeEEEEECCCCCCHHHHHHHHhc
Q 030961 1 MASSASRFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 1 m~~~~~~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
|.+...+.+.|.+.|.+|||||||.+.+..
T Consensus 1 ~~~~~~~~~IIgI~G~SGSGKSTla~~L~~ 30 (327)
T PRK07429 1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLAD 30 (327)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHh
Confidence 676777889999999999999999998874
No 439
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.27 E-value=0.00033 Score=49.20 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=22.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.+...|.+.|++|||||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999988753
No 440
>PRK14532 adenylate kinase; Provisional
Probab=97.27 E-value=0.00026 Score=48.81 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
+|+++|+|||||||+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999875
No 441
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.26 E-value=0.00029 Score=46.25 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030961 11 CVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~ 31 (168)
++++|++|+|||||++++...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 442
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.26 E-value=0.0003 Score=47.81 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
||++-|.+|+||||++.+++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 443
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.25 E-value=0.00023 Score=45.65 Aligned_cols=21 Identities=19% Similarity=0.063 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030961 11 CVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~ 31 (168)
|++.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998764
No 444
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.25 E-value=0.00039 Score=38.95 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
..++.|+.|+||||++..+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988754
No 445
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.25 E-value=0.00031 Score=48.44 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999654
No 446
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.24 E-value=0.00029 Score=48.42 Aligned_cols=22 Identities=18% Similarity=0.031 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
..|+++|++||||||+++++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999873
No 447
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.23 E-value=0.00029 Score=48.17 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998664
No 448
>PRK01889 GTPase RsgA; Reviewed
Probab=97.22 E-value=0.00038 Score=52.93 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~ 32 (168)
-+++++|.+|+|||||+|.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 478999999999999999998753
No 449
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.21 E-value=0.0003 Score=46.37 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.|+++|+.++|||||+..+++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 450
>PRK14531 adenylate kinase; Provisional
Probab=97.20 E-value=0.00037 Score=47.96 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
.+|+++|+|||||||+..++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 451
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.19 E-value=0.029 Score=38.06 Aligned_cols=125 Identities=11% Similarity=0.034 Sum_probs=78.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
..-.|++||..+.++..|...++.... + +. +++.-...-+-- ......=...|.|+|+
T Consensus 14 n~atiLLVg~e~~~~~~LA~a~l~~~~------~----~~-----------l~Vh~a~sLPLp-~e~~~lRprIDlIVFv 71 (176)
T PF11111_consen 14 NTATILLVGTEEALLQQLAEAMLEEDK------E----FK-----------LKVHLAKSLPLP-SENNNLRPRIDLIVFV 71 (176)
T ss_pred ceeEEEEecccHHHHHHHHHHHHhhcc------c----ee-----------EEEEEeccCCCc-ccccCCCceeEEEEEE
Confidence 466799999999999999999886321 0 11 111111111000 0011112358999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
+|..+.-|++.+ +.-+..+.... -++-++ +.+-....+... +...+..+++..|.+ +++.+.-.+.
T Consensus 72 inl~sk~SL~~v-e~SL~~vd~~fflGKVCf-l~t~a~~~~~~s----------v~~~~V~kla~~y~~-plL~~~le~~ 138 (176)
T PF11111_consen 72 INLHSKYSLQSV-EASLSHVDPSFFLGKVCF-LATNAGRESHCS----------VHPNEVRKLAATYNS-PLLFADLENE 138 (176)
T ss_pred EecCCcccHHHH-HHHHhhCChhhhccceEE-EEcCCCcccccc----------cCHHHHHHHHHHhCC-CEEEeecccc
Confidence 999999999988 65555555443 344444 445444444333 788999999999998 8877665544
Q ss_pred c
Q 030961 166 Q 166 (168)
Q Consensus 166 ~ 166 (168)
+
T Consensus 139 ~ 139 (176)
T PF11111_consen 139 E 139 (176)
T ss_pred h
Confidence 4
No 452
>PRK02496 adk adenylate kinase; Provisional
Probab=97.18 E-value=0.0004 Score=47.74 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
.+++++|+|||||||+...+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 453
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.18 E-value=0.00033 Score=45.61 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 5899999999999999988775
No 454
>PRK13949 shikimate kinase; Provisional
Probab=97.17 E-value=0.0004 Score=47.23 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
+|+++|.+|+||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998764
No 455
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.16 E-value=0.00034 Score=45.77 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.|+++|++|+|||+++..+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999987653
No 456
>PRK08233 hypothetical protein; Provisional
Probab=97.16 E-value=0.00047 Score=47.11 Aligned_cols=24 Identities=17% Similarity=-0.015 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
..-|++.|.+|||||||..++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 356888999999999999998753
No 457
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.15 E-value=0.0004 Score=47.61 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q 030961 11 CVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~ 30 (168)
|+++|+|||||||+..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998865
No 458
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.15 E-value=0.00042 Score=47.40 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|++||||||+++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4799999999999999999874
No 459
>PLN02674 adenylate kinase
Probab=97.13 E-value=0.00042 Score=49.85 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=21.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
....+|+++|+|||||+|+..++..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998875
No 460
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.13 E-value=0.0018 Score=40.48 Aligned_cols=99 Identities=15% Similarity=0.077 Sum_probs=55.6
Q ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChh
Q 030961 14 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 93 (168)
Q Consensus 14 vG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 93 (168)
=+..|+||||+...|-..--......+.-.+... .....+.++|+|+.... .....+..+|.++++.+. +..
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~-----~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~-~~~ 77 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDL-----QFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQ-DLP 77 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCC-----CCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecC-ChH
Confidence 3568999999877654321000011111111000 00116888999986542 223456789999998875 455
Q ss_pred HHHHHHHhHHHHHchhC-C-CCcEEEEeeC
Q 030961 94 SYENVLKKWIPELQHYS-P-GVPVVLVGTK 121 (168)
Q Consensus 94 s~~~~~~~~~~~l~~~~-~-~~p~ivv~nK 121 (168)
++... ..+.+.+.+.. + ...+.+|+|+
T Consensus 78 s~~~~-~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNA-KRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHH-HHHHHHHHHcCCCCcCceEEEecC
Confidence 66665 66777666654 3 3466677764
No 461
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.12 E-value=0.0004 Score=47.96 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
+|+++|+|||||||+..+|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 462
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.11 E-value=0.00044 Score=48.11 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030961 11 CVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~ 31 (168)
|.+.|++|||||||++.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998663
No 463
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.10 E-value=0.00042 Score=48.78 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
+|+|+|+|||||||+..+|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 464
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.09 E-value=0.0093 Score=40.46 Aligned_cols=66 Identities=12% Similarity=-0.065 Sum_probs=42.6
Q ss_pred EEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 57 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 57 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
.+.++|+|+.... .....+..+|.++++.+.. ..++..+ ..+++.+.+. ......++.|+.+....
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~-~~~~~~~~~~-~~~~~~iv~N~~~~~~~ 129 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPE-ISSLRDA-DRVKGLLEAL-GIKVVGVIVNRVRPDMV 129 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCC-cchHHHH-HHHHHHHHHc-CCceEEEEEeCCccccc
Confidence 6889999986432 2234467899999998764 3445554 4555555552 22346688999987543
No 465
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.09 E-value=0.00054 Score=42.85 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=18.6
Q ss_pred eEEEEECCCCCCHHHHHHHHh
Q 030961 9 IKCVTVGDGAVGKTCMLICYT 29 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~ 29 (168)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 358999999999999999875
No 466
>PRK06547 hypothetical protein; Provisional
Probab=97.07 E-value=0.00067 Score=46.29 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=22.6
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
......|++.|.+||||||+.+.+...
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345678889999999999999998753
No 467
>PRK00625 shikimate kinase; Provisional
Probab=97.06 E-value=0.00059 Score=46.61 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
+|+++|.|||||||+...+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 468
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.05 E-value=0.00049 Score=45.40 Aligned_cols=26 Identities=12% Similarity=0.127 Sum_probs=22.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.+..++|++.|-||+|||||..++..
T Consensus 4 ~r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 4 ERERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence 35678999999999999999999864
No 469
>PLN02200 adenylate kinase family protein
Probab=97.05 E-value=0.0008 Score=48.21 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=20.8
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
....|+++|.|||||||+..++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998864
No 470
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.04 E-value=0.0008 Score=45.91 Aligned_cols=24 Identities=17% Similarity=0.014 Sum_probs=20.5
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
+..-|++.|.+||||||+.+.+..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~ 29 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE 29 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345899999999999999988764
No 471
>PRK14527 adenylate kinase; Provisional
Probab=97.04 E-value=0.00076 Score=46.70 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...|+++|+|||||||+..++..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998863
No 472
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.04 E-value=0.0015 Score=44.58 Aligned_cols=45 Identities=18% Similarity=0.128 Sum_probs=29.8
Q ss_pred cEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 81 DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
|++++|+|+.++.+-.. ..+.+.+.-...+.|+++|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVLQAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHHhccCCCCEEEEEehhhcCCH
Confidence 68999999988754332 2333332111146899999999999654
No 473
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.03 E-value=0.00059 Score=47.67 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.--|+++|++|||||||++.+.+.
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345899999999999999998764
No 474
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.01 E-value=0.00051 Score=46.24 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030961 11 CVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~ 31 (168)
|+++|++||||||+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999988754
No 475
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.01 E-value=0.00064 Score=47.43 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030961 11 CVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~ 31 (168)
+++.|++||||||+++.+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999987764
No 476
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.00 E-value=0.00069 Score=47.85 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
.+|+|+|+|||||||+..++..
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998764
No 477
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.98 E-value=0.00056 Score=44.07 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=18.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
--+++.|++|+|||++++++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHH
Confidence 34789999999999999999874
No 478
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.98 E-value=0.00076 Score=48.34 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=22.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
....+++|+|.+|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999999988754
No 479
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.98 E-value=0.00064 Score=48.27 Aligned_cols=20 Identities=25% Similarity=0.209 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q 030961 11 CVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~ 30 (168)
|.+.|++|||||||++.+.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 67899999999999998875
No 480
>PRK14528 adenylate kinase; Provisional
Probab=96.97 E-value=0.0008 Score=46.48 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
.+|+++|+|||||||+.+++..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 481
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.97 E-value=0.0053 Score=41.90 Aligned_cols=85 Identities=20% Similarity=0.266 Sum_probs=58.1
Q ss_pred eEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhc
Q 030961 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 133 (168)
Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~ 133 (168)
..+.+.++|+|+.... .....+..+|.++++...+ ..+...+ ..+.+.+.+. +.|+.+|.||+|....
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~-~~~~~~l~~~--~~~~~vV~N~~~~~~~------ 158 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDL-ERAVELVRHF--GIPVGVVINKYDLNDE------ 158 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHH-HHHHHHHHHc--CCCEEEEEeCCCCCcc------
Confidence 4578899999976432 2234567899999999875 3455555 5666666653 4678899999987543
Q ss_pred CCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 134 HPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
..++.+++.+.++. +++
T Consensus 159 -------~~~~~~~~~~~~~~-~vl 175 (179)
T cd03110 159 -------IAEEIEDYCEEEGI-PIL 175 (179)
T ss_pred -------hHHHHHHHHHHcCC-CeE
Confidence 23566777887776 543
No 482
>PRK14529 adenylate kinase; Provisional
Probab=96.97 E-value=0.0008 Score=47.80 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
++|+++|+|||||||+..++..
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~ 22 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKK 22 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988764
No 483
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.96 E-value=0.0025 Score=41.52 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
--+++.|+.|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999998865
No 484
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.96 E-value=0.00072 Score=50.76 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030961 11 CVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~ 31 (168)
++++|++|||||||++.+.+-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999988764
No 485
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.96 E-value=0.0019 Score=47.70 Aligned_cols=102 Identities=20% Similarity=0.272 Sum_probs=58.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccc----------------
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY---------------- 69 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------------- 69 (168)
.+...++++|++|.|||+++.+|........ .+ +...+.+....+|..+..
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~------------~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DE------------DAERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CC------------CCccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 3557799999999999999999998653211 11 111234555566542211
Q ss_pred --------cccccccccCCcEEEEEEeCCCh---hHHHHHHHhHHHHHchhC--CCCcEEEEeeC
Q 030961 70 --------NRLRPLSYRGADVFVLAFSLVSR---ASYENVLKKWIPELQHYS--PGVPVVLVGTK 121 (168)
Q Consensus 70 --------~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK 121 (168)
.......++...+=++++|--+- -+.... ...+..++... -++|+|.+|++
T Consensus 126 ~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~q-r~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 126 PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQ-REFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHH-HHHHHHHHHHhhccCCCeEEeccH
Confidence 11112234567777888884221 122222 44555555554 36899999864
No 486
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.96 E-value=0.00078 Score=44.65 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030961 11 CVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~ 31 (168)
+++.|.+||||||+...+...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 688999999999999988764
No 487
>PRK06762 hypothetical protein; Provisional
Probab=96.95 E-value=0.00079 Score=45.44 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.-|++.|.+||||||+.+.|...
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999988653
No 488
>PHA00729 NTP-binding motif containing protein
Probab=96.95 E-value=0.00093 Score=47.40 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
..+|++.|+||+|||+|+.++...
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998754
No 489
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.95 E-value=0.0009 Score=46.19 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.-.++++|++|+||||+++.+++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999988764
No 490
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.00073 Score=47.37 Aligned_cols=20 Identities=25% Similarity=0.587 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q 030961 11 CVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~ 30 (168)
-+++|++|||||||++.|-.
T Consensus 36 TAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 58999999999999987743
No 491
>PRK13695 putative NTPase; Provisional
Probab=96.92 E-value=0.00092 Score=45.57 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
+++++.|.+|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998654
No 492
>PRK14526 adenylate kinase; Provisional
Probab=96.90 E-value=0.00096 Score=47.06 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
+++++|+|||||||+.+.+..
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998864
No 493
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.89 E-value=0.001 Score=45.40 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.+|+++|++|+||||+...+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999998753
No 494
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0016 Score=45.80 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=22.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.+.+=|.+-|.+||||||+++++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 6678899999999999999998875
No 495
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.0017 Score=46.19 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999998876
No 496
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.88 E-value=0.0008 Score=45.94 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=16.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...+++.|.+|+|||+|++++..
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998764
No 497
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.88 E-value=0.0012 Score=45.30 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=18.9
Q ss_pred eEEEEECCCCCCHHHHHHHHh
Q 030961 9 IKCVTVGDGAVGKTCMLICYT 29 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~ 29 (168)
-.++++|+.|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999875
No 498
>PF05729 NACHT: NACHT domain
Probab=96.88 E-value=0.00099 Score=44.52 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030961 11 CVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~ 31 (168)
+++.|.+|+|||+++.++...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999988754
No 499
>PRK04040 adenylate kinase; Provisional
Probab=96.87 E-value=0.0011 Score=45.85 Aligned_cols=22 Identities=32% Similarity=0.215 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
..|++.|.||+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999998854
No 500
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.87 E-value=0.0011 Score=45.43 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
.+.++|++|+|||||+|-+-+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred EEEEECCCCccHHHHHHHHHh
Confidence 689999999999999998755
Done!