Query 030961
Match_columns 168
No_of_seqs 107 out of 1392
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 11:08:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.8E-40 6.2E-45 233.0 15.7 152 5-168 10-163 (216)
2 3tw8_B RAS-related protein RAB 100.0 1.2E-34 4E-39 197.4 19.0 156 1-168 2-158 (181)
3 3reg_A RHO-like small GTPase; 100.0 1.4E-34 4.9E-39 199.7 19.4 156 5-168 20-175 (194)
4 3t5g_A GTP-binding protein RHE 100.0 1.2E-34 4.2E-39 197.7 18.7 153 4-168 2-156 (181)
5 2fu5_C RAS-related protein RAB 100.0 2.4E-35 8.2E-40 201.6 15.2 156 1-168 1-158 (183)
6 3q3j_B RHO-related GTP-binding 100.0 5.3E-35 1.8E-39 205.1 17.2 163 5-167 24-188 (214)
7 2j0v_A RAC-like GTP-binding pr 100.0 9.5E-35 3.3E-39 203.1 18.0 165 2-168 3-167 (212)
8 2atx_A Small GTP binding prote 100.0 1.8E-34 6.1E-39 199.1 18.9 165 4-168 14-180 (194)
9 3bwd_D RAC-like GTP-binding pr 100.0 2E-35 6.9E-40 201.6 13.6 167 2-168 2-168 (182)
10 1gwn_A RHO-related GTP-binding 100.0 9.1E-35 3.1E-39 202.7 17.1 168 1-168 21-191 (205)
11 1m7b_A RND3/RHOE small GTP-bin 100.0 1.9E-34 6.5E-39 197.6 17.3 165 4-168 3-170 (184)
12 2bcg_Y Protein YP2, GTP-bindin 100.0 5E-34 1.7E-38 198.7 19.5 156 1-168 1-158 (206)
13 3c5c_A RAS-like protein 12; GD 100.0 2.8E-34 9.6E-39 197.4 17.3 151 5-168 18-173 (187)
14 3kkq_A RAS-related protein M-R 100.0 2.5E-34 8.6E-39 196.5 16.9 152 5-168 15-169 (183)
15 2q3h_A RAS homolog gene family 100.0 7.7E-34 2.6E-38 196.9 19.0 164 5-168 17-182 (201)
16 2bme_A RAB4A, RAS-related prot 100.0 4.5E-34 1.5E-38 195.6 17.6 156 1-168 3-160 (186)
17 2fn4_A P23, RAS-related protei 100.0 3.9E-34 1.3E-38 194.8 17.1 156 1-168 2-159 (181)
18 3tkl_A RAS-related protein RAB 100.0 8E-34 2.7E-38 195.9 18.0 153 4-168 12-166 (196)
19 2efe_B Small GTP-binding prote 100.0 1.6E-33 5.5E-38 192.0 19.3 152 5-168 9-162 (181)
20 1z08_A RAS-related protein RAB 100.0 1E-33 3.4E-38 191.1 17.8 152 5-168 3-156 (170)
21 1r2q_A RAS-related protein RAB 100.0 1.4E-33 4.8E-38 190.1 18.1 152 5-168 3-156 (170)
22 3oes_A GTPase rhebl1; small GT 100.0 5.6E-34 1.9E-38 197.9 16.4 154 3-168 19-174 (201)
23 2ew1_A RAS-related protein RAB 100.0 7.5E-34 2.6E-38 197.5 17.0 152 5-168 23-176 (201)
24 1z2a_A RAS-related protein RAB 100.0 1.7E-33 5.8E-38 189.5 18.2 151 6-168 3-154 (168)
25 2gf9_A RAS-related protein RAB 100.0 3.7E-33 1.3E-37 191.8 20.2 152 5-168 19-172 (189)
26 2gco_A H9, RHO-related GTP-bin 100.0 2.3E-33 7.8E-38 194.8 19.3 164 5-168 22-187 (201)
27 1mh1_A RAC1; GTP-binding, GTPa 100.0 2E-33 6.8E-38 192.2 18.6 163 6-168 3-167 (186)
28 1z0f_A RAB14, member RAS oncog 100.0 1.4E-33 4.6E-38 191.8 17.5 152 5-168 12-165 (179)
29 2iwr_A Centaurin gamma 1; ANK 100.0 9.5E-34 3.3E-38 192.8 16.7 152 2-168 1-156 (178)
30 2a5j_A RAS-related protein RAB 100.0 1.9E-33 6.3E-38 193.7 18.2 152 5-168 18-171 (191)
31 2j1l_A RHO-related GTP-binding 100.0 1.2E-33 3.9E-38 198.2 17.3 163 6-168 32-196 (214)
32 2hup_A RAS-related protein RAB 100.0 6.8E-34 2.3E-38 197.6 15.7 152 6-168 27-180 (201)
33 1c1y_A RAS-related protein RAP 100.0 9E-34 3.1E-38 190.7 15.7 151 7-168 2-154 (167)
34 2fg5_A RAB-22B, RAS-related pr 100.0 1.5E-33 5E-38 194.5 17.0 152 5-168 20-173 (192)
35 1z0j_A RAB-22, RAS-related pro 100.0 4.6E-33 1.6E-37 187.7 19.0 152 5-168 3-156 (170)
36 3cpj_B GTP-binding protein YPT 100.0 2.5E-33 8.6E-38 197.6 18.5 152 5-168 10-163 (223)
37 1zbd_A Rabphilin-3A; G protein 100.0 4.6E-33 1.6E-37 193.3 19.5 152 5-168 5-158 (203)
38 1ek0_A Protein (GTP-binding pr 100.0 3.8E-33 1.3E-37 188.0 18.1 153 7-168 2-156 (170)
39 3ihw_A Centg3; RAS, centaurin, 100.0 3.6E-33 1.2E-37 191.5 17.9 149 5-168 17-167 (184)
40 1u8z_A RAS-related protein RAL 100.0 2.2E-33 7.5E-38 188.7 16.1 150 7-168 3-154 (168)
41 2fv8_A H6, RHO-related GTP-bin 100.0 6.7E-33 2.3E-37 193.3 19.0 163 6-168 23-187 (207)
42 3q72_A GTP-binding protein RAD 100.0 3.2E-33 1.1E-37 188.1 16.7 148 8-168 2-151 (166)
43 4gzl_A RAS-related C3 botulinu 100.0 2.8E-33 9.6E-38 194.9 16.9 164 5-168 27-192 (204)
44 2g6b_A RAS-related protein RAB 100.0 9E-33 3.1E-37 188.1 18.9 152 5-168 7-161 (180)
45 2atv_A RERG, RAS-like estrogen 100.0 2.2E-33 7.6E-38 194.1 15.8 153 3-168 23-178 (196)
46 1ky3_A GTP-binding protein YPT 100.0 2.8E-33 9.4E-38 190.8 16.0 158 1-168 1-165 (182)
47 1kao_A RAP2A; GTP-binding prot 100.0 2.3E-33 7.7E-38 188.5 15.3 150 7-168 2-153 (167)
48 2bov_A RAla, RAS-related prote 100.0 4.6E-33 1.6E-37 193.4 17.3 152 5-168 11-164 (206)
49 2nzj_A GTP-binding protein REM 100.0 6.2E-33 2.1E-37 188.0 17.1 151 6-168 2-156 (175)
50 2a9k_A RAS-related protein RAL 100.0 4.2E-33 1.4E-37 190.6 16.3 152 5-168 15-168 (187)
51 2oil_A CATX-8, RAS-related pro 100.0 9.2E-33 3.2E-37 190.4 18.1 152 5-168 22-175 (193)
52 2y8e_A RAB-protein 6, GH09086P 100.0 5.6E-33 1.9E-37 188.7 16.7 151 6-168 12-164 (179)
53 1x3s_A RAS-related protein RAB 100.0 1.1E-32 3.7E-37 190.0 18.2 154 2-168 9-165 (195)
54 1g16_A RAS-related protein SEC 100.0 3.6E-33 1.2E-37 188.3 15.5 149 7-168 2-152 (170)
55 3dz8_A RAS-related protein RAB 100.0 2E-34 7E-39 198.5 9.4 153 4-168 19-173 (191)
56 2o52_A RAS-related protein RAB 100.0 3.6E-33 1.2E-37 193.7 15.5 151 6-168 23-175 (200)
57 2hxs_A RAB-26, RAS-related pro 100.0 1.7E-33 5.7E-38 191.5 13.4 152 5-168 3-160 (178)
58 4dsu_A GTPase KRAS, isoform 2B 100.0 1.2E-32 4E-37 188.8 17.6 150 6-168 2-153 (189)
59 1vg8_A RAS-related protein RAB 100.0 9.3E-33 3.2E-37 192.1 17.1 155 1-168 1-162 (207)
60 3q85_A GTP-binding protein REM 100.0 8.8E-33 3E-37 186.4 16.5 149 8-168 2-154 (169)
61 2g3y_A GTP-binding protein GEM 100.0 1E-32 3.5E-37 193.0 17.1 152 5-168 34-190 (211)
62 2il1_A RAB12; G-protein, GDP, 100.0 3.3E-33 1.1E-37 192.8 14.3 153 5-168 23-177 (192)
63 2p5s_A RAS and EF-hand domain 100.0 3.8E-33 1.3E-37 193.4 14.7 158 5-168 25-184 (199)
64 3bc1_A RAS-related protein RAB 100.0 1E-32 3.4E-37 189.8 16.6 156 1-168 3-172 (195)
65 3cbq_A GTP-binding protein REM 100.0 3.4E-33 1.2E-37 193.3 14.3 152 5-168 20-175 (195)
66 1z06_A RAS-related protein RAB 100.0 1E-32 3.6E-37 189.6 16.5 151 6-168 18-175 (189)
67 2erx_A GTP-binding protein DI- 100.0 7.8E-33 2.7E-37 186.8 15.3 150 7-168 2-154 (172)
68 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.6E-32 8.9E-37 185.4 17.4 152 5-168 4-161 (177)
69 3clv_A RAB5 protein, putative; 100.0 3.5E-32 1.2E-36 188.4 17.4 152 3-168 2-191 (208)
70 3con_A GTPase NRAS; structural 100.0 7.8E-32 2.7E-36 185.2 18.5 151 5-168 18-170 (190)
71 3cph_A RAS-related protein SEC 100.0 6.5E-32 2.2E-36 188.6 18.2 150 6-168 18-169 (213)
72 2yc2_C IFT27, small RAB-relate 100.0 1E-32 3.5E-37 191.8 13.1 151 6-168 18-179 (208)
73 2f7s_A C25KG, RAS-related prot 100.0 1.3E-32 4.4E-37 192.9 13.1 152 5-168 22-186 (217)
74 2ce2_X GTPase HRAS; signaling 100.0 9E-32 3.1E-36 180.4 15.9 148 8-168 3-152 (166)
75 3l0i_B RAS-related protein RAB 100.0 3.8E-34 1.3E-38 198.4 4.1 152 5-168 30-183 (199)
76 2cjw_A GTP-binding protein GEM 100.0 3.1E-31 1.1E-35 183.0 17.4 151 6-168 4-159 (192)
77 3t1o_A Gliding protein MGLA; G 100.0 2.3E-32 7.9E-37 188.5 11.6 151 4-168 10-179 (198)
78 2gf0_A GTP-binding protein DI- 100.0 7.5E-32 2.6E-36 186.4 14.0 151 5-168 5-158 (199)
79 3gj0_A GTP-binding nuclear pro 100.0 4E-32 1.4E-36 191.0 10.1 150 5-168 12-162 (221)
80 4djt_A GTP-binding nuclear pro 100.0 1.1E-31 3.7E-36 188.3 11.9 152 5-168 8-162 (218)
81 2wkq_A NPH1-1, RAS-related C3 100.0 1.7E-30 5.9E-35 192.5 17.8 162 7-168 154-317 (332)
82 3th5_A RAS-related C3 botulinu 99.9 1.9E-33 6.4E-38 195.6 0.0 163 6-168 28-192 (204)
83 1f6b_A SAR1; gtpases, N-termin 100.0 2.7E-30 9.1E-35 179.1 15.5 146 6-168 23-186 (198)
84 4bas_A ADP-ribosylation factor 100.0 1.1E-30 3.7E-35 180.5 12.7 152 5-168 14-176 (199)
85 1m2o_B GTP-binding protein SAR 100.0 8.8E-30 3E-34 175.4 16.7 146 6-168 21-179 (190)
86 2h57_A ADP-ribosylation factor 100.0 1.4E-29 4.9E-34 174.0 14.8 146 6-168 19-174 (190)
87 2h17_A ADP-ribosylation factor 100.0 8.9E-30 3E-34 173.9 12.8 146 5-168 18-170 (181)
88 1r8s_A ADP-ribosylation factor 100.0 1.2E-30 4E-35 175.1 8.1 142 9-168 1-149 (164)
89 3llu_A RAS-related GTP-binding 100.0 4.7E-30 1.6E-34 177.5 11.3 156 4-168 16-184 (196)
90 1zd9_A ADP-ribosylation factor 100.0 7.8E-30 2.7E-34 175.2 12.3 146 6-168 20-172 (188)
91 2f9l_A RAB11B, member RAS onco 100.0 1E-28 3.5E-33 171.1 18.0 151 6-168 3-155 (199)
92 1zj6_A ADP-ribosylation factor 100.0 1.3E-29 4.3E-34 173.9 13.1 145 6-168 14-165 (187)
93 1ksh_A ARF-like protein 2; sma 100.0 4.5E-29 1.5E-33 170.9 15.2 145 6-168 16-167 (186)
94 1upt_A ARL1, ADP-ribosylation 100.0 2E-29 6.9E-34 170.1 12.9 150 6-168 5-156 (171)
95 2zej_A Dardarin, leucine-rich 100.0 1E-30 3.5E-35 179.1 6.2 149 8-167 2-164 (184)
96 1oix_A RAS-related protein RAB 100.0 4.9E-28 1.7E-32 166.8 18.1 151 6-168 27-179 (191)
97 2b6h_A ADP-ribosylation factor 100.0 2.6E-30 8.8E-35 178.3 6.5 151 5-168 26-178 (192)
98 2x77_A ADP-ribosylation factor 100.0 1.3E-29 4.4E-34 174.1 9.1 150 6-168 20-171 (189)
99 1fzq_A ADP-ribosylation factor 100.0 2.8E-29 9.7E-34 171.5 10.7 146 5-168 13-165 (181)
100 1moz_A ARL1, ADP-ribosylation 100.0 9.6E-29 3.3E-33 168.6 12.1 145 6-168 16-167 (183)
101 2fh5_B SR-beta, signal recogni 100.0 3.5E-28 1.2E-32 170.0 13.0 122 5-128 4-131 (214)
102 3c5h_A Glucocorticoid receptor 100.0 1.2E-28 4.1E-33 177.0 8.6 150 5-168 16-242 (255)
103 3r7w_A Gtpase1, GTP-binding pr 100.0 1.3E-27 4.3E-32 175.9 12.4 151 7-164 2-165 (307)
104 2wji_A Ferrous iron transport 99.9 2.4E-27 8.4E-32 159.6 12.5 141 8-168 3-152 (165)
105 3r7w_B Gtpase2, GTP-binding pr 99.9 1.5E-28 5.3E-33 180.3 6.6 147 10-165 1-159 (331)
106 2lkc_A Translation initiation 99.9 1.2E-26 4E-31 157.5 15.0 145 5-168 5-158 (178)
107 3dpu_A RAB family protein; roc 99.9 3.7E-27 1.3E-31 185.0 10.9 149 5-168 38-195 (535)
108 3lvq_E ARF-GAP with SH3 domain 99.9 4.6E-27 1.6E-31 183.0 11.0 145 6-168 320-471 (497)
109 2qu8_A Putative nucleolar GTP- 99.9 1.5E-26 5.1E-31 163.4 12.4 150 6-168 27-192 (228)
110 3o47_A ADP-ribosylation factor 99.9 9E-28 3.1E-32 178.2 5.9 146 6-168 163-314 (329)
111 1nrj_B SR-beta, signal recogni 99.9 1.1E-27 3.7E-32 167.9 4.5 149 5-167 9-170 (218)
112 3iev_A GTP-binding protein ERA 99.9 8E-26 2.7E-30 166.3 13.7 153 3-168 5-169 (308)
113 2wjg_A FEOB, ferrous iron tran 99.9 3.1E-26 1.1E-30 156.9 9.4 144 5-168 4-156 (188)
114 1svi_A GTP-binding protein YSX 99.9 2.3E-26 7.9E-31 158.4 8.3 146 5-168 20-182 (195)
115 3a1s_A Iron(II) transport prot 99.9 1.9E-25 6.3E-30 160.6 11.7 143 6-168 3-154 (258)
116 1wf3_A GTP-binding protein; GT 99.9 1.9E-25 6.7E-30 163.7 12.0 151 1-168 1-160 (301)
117 2dyk_A GTP-binding protein; GT 99.9 6.1E-26 2.1E-30 151.5 8.1 139 9-168 2-149 (161)
118 3b1v_A Ferrous iron uptake tra 99.9 1.2E-25 4.1E-30 162.6 9.1 142 7-168 2-151 (272)
119 2cxx_A Probable GTP-binding pr 99.9 3.2E-26 1.1E-30 156.8 5.7 142 9-168 2-171 (190)
120 2gj8_A MNME, tRNA modification 99.9 1.1E-25 3.6E-30 152.7 7.9 140 7-168 3-153 (172)
121 3iby_A Ferrous iron transport 99.9 1.3E-25 4.6E-30 161.1 7.1 140 9-168 2-154 (256)
122 3pqc_A Probable GTP-binding pr 99.9 5.7E-25 2E-29 151.1 9.4 148 5-168 20-181 (195)
123 3i8s_A Ferrous iron transport 99.9 6.5E-25 2.2E-29 159.1 6.8 142 7-168 2-156 (274)
124 4dhe_A Probable GTP-binding pr 99.9 1.6E-24 5.4E-29 152.2 7.4 152 5-168 26-198 (223)
125 3k53_A Ferrous iron transport 99.9 3.4E-24 1.2E-28 155.1 9.1 143 7-168 2-153 (271)
126 3gee_A MNME, tRNA modification 99.9 1.4E-23 4.7E-28 162.1 10.8 142 7-168 232-385 (476)
127 2hjg_A GTP-binding protein ENG 99.9 6.4E-24 2.2E-28 162.9 8.4 146 7-168 174-336 (436)
128 4dcu_A GTP-binding protein ENG 99.9 1.2E-23 4E-28 162.3 9.5 147 6-168 193-356 (456)
129 1ega_A Protein (GTP-binding pr 99.9 5.9E-23 2E-27 150.6 12.0 148 5-168 5-162 (301)
130 3qq5_A Small GTP-binding prote 99.9 6.3E-24 2.2E-28 161.6 6.0 144 5-168 31-183 (423)
131 2ged_A SR-beta, signal recogni 99.9 6.4E-23 2.2E-27 140.9 8.1 114 6-128 46-172 (193)
132 2e87_A Hypothetical protein PH 99.9 5E-22 1.7E-26 148.9 12.5 147 6-168 165-323 (357)
133 1mky_A Probable GTP-binding pr 99.9 2E-22 6.9E-27 154.7 9.8 140 9-168 2-153 (439)
134 3p26_A Elongation factor 1 alp 99.9 2.3E-22 8E-27 156.0 9.6 156 6-168 31-225 (483)
135 1lnz_A SPO0B-associated GTP-bi 99.9 7.6E-23 2.6E-27 152.0 6.6 143 9-168 159-317 (342)
136 1xzp_A Probable tRNA modificat 99.9 3.2E-22 1.1E-26 154.6 9.0 139 8-168 243-392 (482)
137 3sjy_A Translation initiation 99.9 2.4E-21 8E-26 147.3 13.2 155 4-168 4-179 (403)
138 3j2k_7 ERF3, eukaryotic polype 99.9 3.2E-21 1.1E-25 147.9 13.3 156 5-168 14-212 (439)
139 1cip_A Protein (guanine nucleo 99.9 3.9E-22 1.3E-26 148.7 7.4 112 55-168 192-331 (353)
140 2hjg_A GTP-binding protein ENG 99.9 4.7E-23 1.6E-27 158.1 2.2 141 8-168 3-152 (436)
141 2xtz_A Guanine nucleotide-bind 99.9 5.9E-22 2E-26 147.8 8.0 114 54-168 181-332 (354)
142 1zun_B Sulfate adenylate trans 99.9 4.5E-21 1.5E-25 147.0 13.0 154 6-168 22-211 (434)
143 3izy_P Translation initiation 99.9 1.8E-23 6E-28 163.0 -0.6 148 7-168 3-155 (537)
144 1jny_A EF-1-alpha, elongation 99.9 3.5E-22 1.2E-26 153.2 6.5 157 5-168 3-200 (435)
145 2ywe_A GTP-binding protein LEP 99.9 2.2E-21 7.4E-26 153.0 10.8 148 5-168 3-171 (600)
146 2xtp_A GTPase IMAP family memb 99.9 1.6E-21 5.3E-26 140.2 9.1 155 5-168 19-195 (260)
147 1s0u_A EIF-2-gamma, translatio 99.9 7.5E-21 2.6E-25 144.8 12.5 151 4-168 4-185 (408)
148 1f60_A Elongation factor EEF1A 99.9 7E-21 2.4E-25 146.8 12.2 154 5-168 4-199 (458)
149 3cb4_D GTP-binding protein LEP 99.8 1.8E-21 6E-26 153.7 9.0 146 7-168 3-169 (599)
150 1wb1_A Translation elongation 99.8 2.7E-21 9.4E-26 149.8 9.8 147 5-168 16-176 (482)
151 2qag_A Septin-2, protein NEDD5 99.8 2.1E-22 7.1E-27 151.0 3.3 147 7-167 36-220 (361)
152 1mky_A Probable GTP-binding pr 99.8 1.5E-20 5.1E-25 144.4 13.4 146 7-168 179-342 (439)
153 3lxx_A GTPase IMAP family memb 99.8 5.5E-21 1.9E-25 135.8 9.8 150 5-164 26-192 (239)
154 3geh_A MNME, tRNA modification 99.8 1.1E-21 3.7E-26 151.0 6.4 139 7-168 223-371 (462)
155 3t5d_A Septin-7; GTP-binding p 99.8 2.9E-21 9.9E-26 139.9 8.2 151 5-168 5-191 (274)
156 3ohm_A Guanine nucleotide-bind 99.8 4.8E-21 1.6E-25 141.1 9.4 112 55-168 166-305 (327)
157 1r5b_A Eukaryotic peptide chai 99.8 7.2E-21 2.5E-25 147.0 9.1 156 5-168 40-239 (467)
158 2c78_A Elongation factor TU-A; 99.8 5.1E-21 1.8E-25 145.6 8.1 152 5-167 8-180 (405)
159 1kk1_A EIF2gamma; initiation o 99.8 2.4E-20 8.3E-25 142.1 11.5 150 5-168 7-187 (410)
160 4dcu_A GTP-binding protein ENG 99.8 7E-22 2.4E-26 152.4 2.7 142 7-168 22-172 (456)
161 3izq_1 HBS1P, elongation facto 99.8 8E-20 2.7E-24 145.0 14.4 154 6-168 165-359 (611)
162 2qtf_A Protein HFLX, GTP-bindi 99.8 7.4E-20 2.5E-24 137.1 13.4 148 8-168 178-341 (364)
163 3lxw_A GTPase IMAP family memb 99.8 3.3E-20 1.1E-24 132.5 10.6 149 5-163 18-185 (247)
164 1d2e_A Elongation factor TU (E 99.8 1.6E-20 5.4E-25 142.5 8.7 149 7-167 2-171 (397)
165 1g7s_A Translation initiation 99.8 1.3E-19 4.4E-24 143.2 13.4 114 6-126 3-136 (594)
166 1zo1_I IF2, translation initia 99.8 3.3E-21 1.1E-25 149.1 3.7 150 6-168 2-154 (501)
167 3tr5_A RF-3, peptide chain rel 99.8 6.5E-21 2.2E-25 148.9 4.8 118 6-127 11-149 (528)
168 3def_A T7I23.11 protein; chlor 99.8 5.6E-20 1.9E-24 132.3 9.3 118 7-127 35-166 (262)
169 2aka_B Dynamin-1; fusion prote 99.8 1.7E-20 5.9E-25 137.1 6.7 150 6-168 24-240 (299)
170 4fid_A G protein alpha subunit 99.8 5.3E-20 1.8E-24 136.1 8.8 114 54-168 159-315 (340)
171 3mca_A HBS1, elongation factor 99.8 9.1E-21 3.1E-25 149.9 4.9 154 6-168 175-370 (592)
172 1h65_A Chloroplast outer envel 99.8 4.4E-19 1.5E-23 128.1 11.2 119 7-128 38-170 (270)
173 1u0l_A Probable GTPase ENGC; p 99.8 2.1E-20 7.3E-25 137.0 4.0 125 23-168 32-160 (301)
174 2elf_A Protein translation elo 99.8 2.5E-19 8.4E-24 134.6 7.3 136 10-168 23-167 (370)
175 2h5e_A Peptide chain release f 99.8 1.3E-18 4.6E-23 135.9 11.5 147 6-168 11-182 (529)
176 3avx_A Elongation factor TS, e 99.8 4.3E-19 1.5E-23 146.9 8.0 150 5-165 293-462 (1289)
177 3t34_A Dynamin-related protein 99.8 2.4E-19 8.1E-24 134.5 5.4 148 7-167 33-247 (360)
178 1pui_A ENGB, probable GTP-bind 99.8 1.5E-18 5E-23 120.6 8.4 148 6-168 24-186 (210)
179 1wxq_A GTP-binding protein; st 99.8 4.8E-18 1.6E-22 128.6 11.7 84 9-92 1-114 (397)
180 2dy1_A Elongation factor G; tr 99.8 2.8E-18 9.7E-23 137.5 10.6 117 5-125 6-139 (665)
181 1dar_A EF-G, elongation factor 99.7 8.2E-18 2.8E-22 135.3 10.8 117 4-127 8-144 (691)
182 2qag_C Septin-7; cell cycle, c 99.7 1.1E-17 3.6E-22 127.2 10.2 147 7-168 30-214 (418)
183 1jwy_B Dynamin A GTPase domain 99.7 1.2E-18 4.2E-23 128.2 4.3 69 56-127 131-213 (315)
184 2j69_A Bacterial dynamin-like 99.7 2.2E-17 7.4E-22 132.9 11.4 119 6-127 67-245 (695)
185 2qnr_A Septin-2, protein NEDD5 99.7 2.4E-18 8.3E-23 126.0 4.7 149 6-168 16-201 (301)
186 1zcb_A G alpha I/13; GTP-bindi 99.7 3.6E-17 1.2E-21 122.4 10.5 112 55-168 200-340 (362)
187 1azs_C GS-alpha; complex (lyas 99.7 7.5E-17 2.6E-21 121.7 10.9 72 56-128 217-300 (402)
188 1udx_A The GTP-binding protein 99.7 8.6E-17 2.9E-21 122.2 10.6 143 10-168 159-312 (416)
189 2xex_A Elongation factor G; GT 99.7 7.3E-17 2.5E-21 129.8 10.8 117 5-127 7-142 (693)
190 2rdo_7 EF-G, elongation factor 99.7 6.9E-16 2.4E-20 124.3 14.7 118 5-127 7-149 (704)
191 1jal_A YCHF protein; nucleotid 99.7 7.8E-16 2.7E-20 114.8 13.6 82 9-91 3-108 (363)
192 2qpt_A EH domain-containing pr 99.7 9.8E-17 3.3E-21 126.0 7.8 119 6-128 63-234 (550)
193 1n0u_A EF-2, elongation factor 99.7 1.5E-16 5.1E-21 130.3 9.1 118 5-126 16-164 (842)
194 2x2e_A Dynamin-1; nitration, h 99.7 2.5E-17 8.6E-22 123.2 4.0 149 7-168 30-245 (353)
195 2hf9_A Probable hydrogenase ni 99.6 7.6E-18 2.6E-22 118.3 -3.5 141 7-168 37-211 (226)
196 2wsm_A Hydrogenase expression/ 99.6 2E-15 6.7E-20 105.6 7.4 141 7-168 29-201 (221)
197 2dby_A GTP-binding protein; GD 99.6 1.9E-14 6.5E-19 107.8 11.7 82 9-91 2-111 (368)
198 3p32_A Probable GTPase RV1496/ 99.5 3E-15 1E-19 112.0 4.7 95 55-168 171-271 (355)
199 2www_A Methylmalonic aciduria 99.5 7.4E-15 2.5E-19 109.6 2.1 91 56-168 167-266 (349)
200 3zvr_A Dynamin-1; hydrolase, D 99.5 6.4E-14 2.2E-18 112.9 7.4 150 6-168 49-265 (772)
201 3vqt_A RF-3, peptide chain rel 99.5 5E-13 1.7E-17 105.0 10.9 132 7-154 30-182 (548)
202 1yrb_A ATP(GTP)binding protein 99.4 2E-13 6.8E-18 97.8 7.8 69 56-127 109-186 (262)
203 2yv5_A YJEQ protein; hydrolase 99.4 4.2E-13 1.4E-17 98.3 9.3 89 66-168 66-156 (302)
204 4a9a_A Ribosome-interacting GT 99.4 1.9E-12 6.6E-17 97.0 12.2 141 7-154 71-222 (376)
205 2p67_A LAO/AO transport system 99.4 1.9E-14 6.5E-19 107.1 0.1 93 55-168 148-248 (341)
206 4fn5_A EF-G 1, elongation fact 99.4 4.8E-12 1.6E-16 102.3 11.5 119 6-128 11-153 (709)
207 3j25_A Tetracycline resistance 99.4 9.6E-14 3.3E-18 110.9 1.5 116 8-127 2-134 (638)
208 2ohf_A Protein OLA1, GTP-bindi 99.3 6.6E-13 2.3E-17 100.0 5.0 88 7-94 21-131 (396)
209 2qm8_A GTPase/ATPase; G protei 99.3 9.4E-12 3.2E-16 92.4 6.6 93 55-168 147-248 (337)
210 3l82_B F-box only protein 4; T 99.2 6.2E-12 2.1E-16 86.4 3.6 92 63-168 109-210 (227)
211 3l2o_B F-box only protein 4; s 99.0 1.7E-10 5.7E-15 83.0 4.0 92 63-168 194-295 (312)
212 3ec1_A YQEH GTPase; atnos1, at 99.0 9.1E-11 3.1E-15 88.1 1.2 113 8-128 162-290 (369)
213 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 1.2E-09 4.2E-14 82.3 7.0 85 7-91 19-127 (392)
214 3h2y_A GTPase family protein; 98.9 1.1E-10 3.7E-15 87.7 -0.8 114 8-128 160-289 (368)
215 2qag_B Septin-6, protein NEDD5 98.9 7.8E-08 2.7E-12 73.2 13.7 116 8-128 42-192 (427)
216 3h2y_A GTPase family protein; 98.8 2.2E-09 7.4E-14 80.6 4.6 87 65-168 55-147 (368)
217 3sop_A Neuronal-specific septi 98.8 7.7E-08 2.6E-12 69.2 11.2 115 8-127 2-155 (270)
218 2j37_W Signal recognition part 98.8 2.2E-09 7.7E-14 83.3 2.6 115 6-127 99-255 (504)
219 3ec1_A YQEH GTPase; atnos1, at 98.7 6.7E-09 2.3E-13 78.0 3.2 91 65-168 57-149 (369)
220 1puj_A YLQF, conserved hypothe 98.6 2.9E-08 9.9E-13 71.9 5.1 58 6-67 118-176 (282)
221 3cnl_A YLQF, putative uncharac 98.6 2.1E-08 7.1E-13 71.9 3.5 56 9-68 100-156 (262)
222 3dm5_A SRP54, signal recogniti 98.5 8.4E-07 2.9E-11 67.8 9.9 139 7-168 99-278 (443)
223 1puj_A YLQF, conserved hypothe 98.4 1.4E-07 4.9E-12 68.2 3.4 88 61-168 4-93 (282)
224 1f5n_A Interferon-induced guan 98.4 3.4E-07 1.2E-11 72.4 5.3 63 6-68 36-103 (592)
225 1tq4_A IIGP1, interferon-induc 98.4 2.8E-06 9.6E-11 64.5 10.1 112 8-125 69-188 (413)
226 2v3c_C SRP54, signal recogniti 98.4 9.4E-07 3.2E-11 67.6 7.3 112 8-126 99-252 (432)
227 3kl4_A SRP54, signal recogniti 98.3 8E-07 2.7E-11 67.9 6.3 90 55-167 179-276 (433)
228 1t9h_A YLOQ, probable GTPase E 98.3 2.6E-06 8.9E-11 62.3 7.3 85 71-168 78-164 (307)
229 1j8m_F SRP54, signal recogniti 98.1 1.7E-05 5.7E-10 57.8 8.0 85 55-161 180-273 (297)
230 3cnl_A YLQF, putative uncharac 98.0 1.6E-06 5.3E-11 62.1 2.2 83 64-168 5-88 (262)
231 3szr_A Interferon-induced GTP- 98.0 5.1E-06 1.7E-10 66.2 4.6 24 9-32 46-69 (608)
232 1bif_A 6-phosphofructo-2-kinas 97.9 1.8E-07 6.3E-12 72.3 -4.6 101 6-109 37-148 (469)
233 1knq_A Gluconate kinase; ALFA/ 97.8 1.9E-05 6.4E-10 52.7 3.6 30 1-30 1-30 (175)
234 3q5d_A Atlastin-1; G protein, 97.7 4.4E-05 1.5E-09 58.5 5.4 25 6-30 65-89 (447)
235 2rcn_A Probable GTPase ENGC; Y 97.6 0.00014 4.8E-09 54.2 6.6 76 77-168 128-206 (358)
236 1ye8_A Protein THEP1, hypothet 97.6 5E-05 1.7E-09 51.1 3.3 23 9-31 1-23 (178)
237 1kgd_A CASK, peripheral plasma 97.5 5E-05 1.7E-09 51.0 3.1 22 10-31 7-28 (180)
238 2wwf_A Thymidilate kinase, put 97.5 6.6E-05 2.3E-09 51.4 3.4 30 1-30 3-32 (212)
239 1y63_A LMAJ004144AAA protein; 97.5 7.1E-05 2.4E-09 50.4 3.4 30 2-31 4-33 (184)
240 1zp6_A Hypothetical protein AT 97.5 7.2E-05 2.4E-09 50.4 3.2 23 9-31 10-32 (191)
241 1lvg_A Guanylate kinase, GMP k 97.5 6.8E-05 2.3E-09 51.2 3.1 22 9-30 5-26 (198)
242 1t9h_A YLOQ, probable GTPase E 97.4 6.4E-05 2.2E-09 54.9 2.3 23 9-31 174-196 (307)
243 3tr0_A Guanylate kinase, GMP k 97.4 0.00011 3.7E-09 50.1 3.0 22 10-31 9-30 (205)
244 3a00_A Guanylate kinase, GMP k 97.3 0.00011 3.7E-09 49.6 2.9 21 11-31 4-24 (186)
245 3lw7_A Adenylate kinase relate 97.3 0.00013 4.6E-09 48.1 3.3 20 9-28 2-21 (179)
246 4gp7_A Metallophosphoesterase; 97.3 0.00011 3.8E-09 48.9 2.7 20 10-29 11-30 (171)
247 3asz_A Uridine kinase; cytidin 97.3 0.00013 4.3E-09 50.1 2.9 25 6-30 4-28 (211)
248 3ney_A 55 kDa erythrocyte memb 97.3 0.00016 5.5E-09 49.4 3.4 24 8-31 19-42 (197)
249 1uf9_A TT1252 protein; P-loop, 97.3 0.00014 4.7E-09 49.4 3.0 31 1-31 1-31 (203)
250 3tau_A Guanylate kinase, GMP k 97.3 0.00014 4.7E-09 50.0 3.0 23 9-31 9-31 (208)
251 1ex7_A Guanylate kinase; subst 97.3 0.00015 5.2E-09 49.1 3.2 21 11-31 4-24 (186)
252 1ly1_A Polynucleotide kinase; 97.3 0.00019 6.6E-09 47.7 3.6 22 9-30 3-24 (181)
253 2j41_A Guanylate kinase; GMP, 97.3 0.00016 5.5E-09 49.2 3.3 24 8-31 6-29 (207)
254 1via_A Shikimate kinase; struc 97.3 0.00015 5.1E-09 48.3 3.0 21 10-30 6-26 (175)
255 3c8u_A Fructokinase; YP_612366 97.3 0.00017 5.7E-09 49.5 3.3 25 6-30 20-44 (208)
256 1z6g_A Guanylate kinase; struc 97.3 0.00015 5.1E-09 50.3 3.0 22 10-31 25-46 (218)
257 2qor_A Guanylate kinase; phosp 97.3 0.00017 5.6E-09 49.4 3.2 22 9-30 13-34 (204)
258 1qf9_A UMP/CMP kinase, protein 97.3 0.00018 6.2E-09 48.3 3.3 23 8-30 6-28 (194)
259 1znw_A Guanylate kinase, GMP k 97.3 0.00016 5.4E-09 49.6 3.0 22 10-31 22-43 (207)
260 2yv5_A YJEQ protein; hydrolase 97.3 0.00058 2E-08 49.7 6.1 20 10-29 167-186 (302)
261 1s96_A Guanylate kinase, GMP k 97.3 0.00016 5.5E-09 50.3 3.0 22 10-31 18-39 (219)
262 3fb4_A Adenylate kinase; psych 97.3 0.00018 6.2E-09 49.5 3.2 22 9-30 1-22 (216)
263 3kb2_A SPBC2 prophage-derived 97.2 0.00019 6.5E-09 47.3 3.2 21 10-30 3-23 (173)
264 4eun_A Thermoresistant glucoki 97.2 0.00019 6.5E-09 48.9 3.2 23 8-30 29-51 (200)
265 1kag_A SKI, shikimate kinase I 97.2 0.00019 6.4E-09 47.5 3.0 22 9-30 5-26 (173)
266 1nn5_A Similar to deoxythymidy 97.2 0.00016 5.6E-09 49.5 2.8 23 8-30 9-31 (215)
267 3dl0_A Adenylate kinase; phosp 97.2 0.0002 6.9E-09 49.3 3.2 22 9-30 1-22 (216)
268 3sr0_A Adenylate kinase; phosp 97.2 0.00023 7.8E-09 49.0 3.3 22 9-30 1-22 (206)
269 1cke_A CK, MSSA, protein (cyti 97.2 0.00024 8.1E-09 49.2 3.5 22 9-30 6-27 (227)
270 2cdn_A Adenylate kinase; phosp 97.2 0.00028 9.6E-09 48.0 3.5 25 6-30 18-42 (201)
271 2bdt_A BH3686; alpha-beta prot 97.2 0.00023 7.9E-09 47.9 3.0 21 10-30 4-24 (189)
272 3umf_A Adenylate kinase; rossm 97.2 0.00029 1E-08 48.9 3.5 24 7-30 27-51 (217)
273 3cm0_A Adenylate kinase; ATP-b 97.2 0.00032 1.1E-08 47.0 3.6 23 8-30 4-26 (186)
274 2rcn_A Probable GTPase ENGC; Y 97.2 0.00025 8.4E-09 52.9 3.3 23 10-32 217-239 (358)
275 1aky_A Adenylate kinase; ATP:A 97.2 0.00027 9.3E-09 48.8 3.3 24 7-30 3-26 (220)
276 2bbw_A Adenylate kinase 4, AK4 97.1 0.0003 1E-08 49.5 3.5 22 8-29 27-48 (246)
277 1qhx_A CPT, protein (chloramph 97.1 0.00027 9.3E-09 47.0 3.1 22 9-30 4-25 (178)
278 3tlx_A Adenylate kinase 2; str 97.1 0.00034 1.2E-08 49.3 3.7 24 7-30 28-51 (243)
279 3trf_A Shikimate kinase, SK; a 97.1 0.00029 1E-08 47.2 3.2 23 8-30 5-27 (185)
280 2jaq_A Deoxyguanosine kinase; 97.1 0.00029 9.9E-09 47.8 3.2 21 10-30 2-22 (205)
281 3t61_A Gluconokinase; PSI-biol 97.1 0.00026 8.9E-09 48.2 3.0 22 9-30 19-40 (202)
282 1zd8_A GTP:AMP phosphotransfer 97.1 0.00026 8.8E-09 49.2 2.8 23 8-30 7-29 (227)
283 3vaa_A Shikimate kinase, SK; s 97.1 0.00033 1.1E-08 47.6 3.2 23 8-30 25-47 (199)
284 1nks_A Adenylate kinase; therm 97.1 0.00031 1.1E-08 47.2 2.9 21 10-30 3-23 (194)
285 1tev_A UMP-CMP kinase; ploop, 97.1 0.00042 1.4E-08 46.6 3.6 23 8-30 3-25 (196)
286 2rhm_A Putative kinase; P-loop 97.1 0.00032 1.1E-08 47.2 3.0 23 8-30 5-27 (193)
287 1kht_A Adenylate kinase; phosp 97.1 0.00037 1.3E-08 46.7 3.3 22 9-30 4-25 (192)
288 1ukz_A Uridylate kinase; trans 97.1 0.00048 1.6E-08 46.9 3.8 25 6-30 13-37 (203)
289 2i3b_A HCR-ntpase, human cance 97.1 0.00032 1.1E-08 47.6 2.8 21 10-30 3-23 (189)
290 1e4v_A Adenylate kinase; trans 97.0 0.00033 1.1E-08 48.2 2.8 22 9-30 1-22 (214)
291 1np6_A Molybdopterin-guanine d 97.0 0.00038 1.3E-08 46.6 3.0 24 8-31 6-29 (174)
292 1jjv_A Dephospho-COA kinase; P 97.0 0.00047 1.6E-08 47.0 3.6 22 9-30 3-24 (206)
293 3tif_A Uncharacterized ABC tra 97.0 0.00036 1.2E-08 49.0 3.0 22 10-31 33-54 (235)
294 2plr_A DTMP kinase, probable t 97.0 0.00046 1.6E-08 47.1 3.5 23 8-30 4-26 (213)
295 2if2_A Dephospho-COA kinase; a 97.0 0.00035 1.2E-08 47.6 2.7 22 9-30 2-23 (204)
296 1htw_A HI0065; nucleotide-bind 97.0 0.00042 1.4E-08 45.6 3.0 23 10-32 35-57 (158)
297 1gvn_B Zeta; postsegregational 97.0 0.0005 1.7E-08 49.7 3.6 24 7-30 32-55 (287)
298 3uie_A Adenylyl-sulfate kinase 97.0 0.0004 1.4E-08 47.3 3.0 23 8-30 25-47 (200)
299 2v54_A DTMP kinase, thymidylat 97.0 0.00053 1.8E-08 46.5 3.6 24 8-31 4-27 (204)
300 3ec2_A DNA replication protein 97.0 0.00038 1.3E-08 46.5 2.7 24 8-31 38-61 (180)
301 3iij_A Coilin-interacting nucl 97.0 0.00048 1.6E-08 45.9 3.2 23 8-30 11-33 (180)
302 2pt5_A Shikimate kinase, SK; a 97.0 0.0005 1.7E-08 45.2 3.2 21 10-30 2-22 (168)
303 3be4_A Adenylate kinase; malar 97.0 0.0004 1.4E-08 47.9 2.8 24 7-30 4-27 (217)
304 1zak_A Adenylate kinase; ATP:A 97.0 0.00033 1.1E-08 48.5 2.3 23 8-30 5-27 (222)
305 2xb4_A Adenylate kinase; ATP-b 97.0 0.00051 1.8E-08 47.6 3.3 21 10-30 2-22 (223)
306 2eyu_A Twitching motility prot 97.0 0.00047 1.6E-08 49.2 3.1 21 10-30 27-47 (261)
307 2qt1_A Nicotinamide riboside k 96.9 0.00062 2.1E-08 46.5 3.5 25 7-31 20-44 (207)
308 1u0l_A Probable GTPase ENGC; p 96.9 0.00045 1.5E-08 50.3 2.9 23 10-32 171-193 (301)
309 1ak2_A Adenylate kinase isoenz 96.9 0.00057 2E-08 47.7 3.4 24 7-30 15-38 (233)
310 2v9p_A Replication protein E1; 96.9 0.00051 1.8E-08 50.1 3.2 21 10-30 128-148 (305)
311 2onk_A Molybdate/tungstate ABC 96.9 0.00055 1.9E-08 48.2 3.2 22 10-31 26-47 (240)
312 3lnc_A Guanylate kinase, GMP k 96.9 0.00032 1.1E-08 48.8 1.9 23 9-31 28-51 (231)
313 2pcj_A ABC transporter, lipopr 96.9 0.00045 1.5E-08 48.1 2.5 22 10-31 32-53 (224)
314 2c95_A Adenylate kinase 1; tra 96.9 0.00048 1.6E-08 46.4 2.6 23 8-30 9-31 (196)
315 3gfo_A Cobalt import ATP-bindi 96.9 0.00055 1.9E-08 49.2 3.1 22 10-31 36-57 (275)
316 2vli_A Antibiotic resistance p 96.9 0.00041 1.4E-08 46.3 2.3 23 8-30 5-27 (183)
317 2cbz_A Multidrug resistance-as 96.9 0.00062 2.1E-08 47.8 3.3 22 10-31 33-54 (237)
318 1b0u_A Histidine permease; ABC 96.9 0.00057 1.9E-08 48.8 3.1 22 10-31 34-55 (262)
319 1sgw_A Putative ABC transporte 96.9 0.0006 2.1E-08 47.2 3.1 22 10-31 37-58 (214)
320 2ehv_A Hypothetical protein PH 96.9 0.00063 2.2E-08 47.6 3.2 20 10-29 32-51 (251)
321 1mv5_A LMRA, multidrug resista 96.9 0.00067 2.3E-08 47.8 3.3 22 10-31 30-51 (243)
322 2pbr_A DTMP kinase, thymidylat 96.9 0.00067 2.3E-08 45.6 3.2 21 10-30 2-22 (195)
323 2ff7_A Alpha-hemolysin translo 96.9 0.00067 2.3E-08 48.0 3.3 22 10-31 37-58 (247)
324 1xjc_A MOBB protein homolog; s 96.9 0.00074 2.5E-08 45.0 3.3 23 8-30 4-26 (169)
325 2yvu_A Probable adenylyl-sulfa 96.9 0.00087 3E-08 44.9 3.6 24 7-30 12-35 (186)
326 1odf_A YGR205W, hypothetical 3 96.9 0.00082 2.8E-08 48.7 3.7 25 6-30 29-53 (290)
327 4g1u_C Hemin import ATP-bindin 96.9 0.00064 2.2E-08 48.6 3.1 22 10-31 39-60 (266)
328 2z0h_A DTMP kinase, thymidylat 96.9 0.00066 2.3E-08 45.8 3.0 21 10-30 2-22 (197)
329 1g6h_A High-affinity branched- 96.9 0.00064 2.2E-08 48.3 3.0 22 10-31 35-56 (257)
330 3aez_A Pantothenate kinase; tr 96.8 0.00087 3E-08 49.1 3.8 25 6-30 88-112 (312)
331 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00081 2.8E-08 47.8 3.5 22 9-30 5-26 (260)
332 2pze_A Cystic fibrosis transme 96.8 0.00078 2.7E-08 47.1 3.3 22 10-31 36-57 (229)
333 1uj2_A Uridine-cytidine kinase 96.8 0.00083 2.8E-08 47.4 3.4 25 6-30 20-44 (252)
334 4a74_A DNA repair and recombin 96.8 0.00056 1.9E-08 47.3 2.5 22 10-31 27-48 (231)
335 2p5t_B PEZT; postsegregational 96.8 0.00053 1.8E-08 48.5 2.4 24 7-30 31-54 (253)
336 2olj_A Amino acid ABC transpor 96.8 0.00072 2.5E-08 48.3 3.1 22 10-31 52-73 (263)
337 2ze6_A Isopentenyl transferase 96.8 0.00071 2.4E-08 47.9 3.1 21 10-30 3-23 (253)
338 2bwj_A Adenylate kinase 5; pho 96.8 0.00057 2E-08 46.1 2.5 23 8-30 12-34 (199)
339 3tqc_A Pantothenate kinase; bi 96.8 0.00095 3.3E-08 49.0 3.8 25 6-30 90-114 (321)
340 1ji0_A ABC transporter; ATP bi 96.8 0.00072 2.5E-08 47.6 3.0 22 10-31 34-55 (240)
341 1jbk_A CLPB protein; beta barr 96.8 0.00084 2.9E-08 44.6 3.3 23 9-31 44-66 (195)
342 1lw7_A Transcriptional regulat 96.8 0.00058 2E-08 51.0 2.7 24 8-31 170-193 (365)
343 2ghi_A Transport protein; mult 96.8 0.0008 2.7E-08 48.0 3.3 22 10-31 48-69 (260)
344 3b85_A Phosphate starvation-in 96.8 0.00064 2.2E-08 46.8 2.6 22 10-31 24-45 (208)
345 2d2e_A SUFC protein; ABC-ATPas 96.8 0.00079 2.7E-08 47.7 3.2 22 10-31 31-52 (250)
346 1vpl_A ABC transporter, ATP-bi 96.8 0.00077 2.6E-08 47.9 3.1 22 10-31 43-64 (256)
347 1vht_A Dephospho-COA kinase; s 96.8 0.001 3.4E-08 45.8 3.6 23 8-30 4-26 (218)
348 1e6c_A Shikimate kinase; phosp 96.8 0.00081 2.8E-08 44.4 3.0 21 10-30 4-24 (173)
349 2zu0_C Probable ATP-dependent 96.8 0.00084 2.9E-08 48.0 3.2 22 10-31 48-69 (267)
350 2qi9_C Vitamin B12 import ATP- 96.8 0.00079 2.7E-08 47.7 3.1 22 10-31 28-49 (249)
351 2f1r_A Molybdopterin-guanine d 96.8 0.00029 9.8E-09 47.1 0.7 22 10-31 4-25 (171)
352 2ixe_A Antigen peptide transpo 96.8 0.00085 2.9E-08 48.1 3.3 22 10-31 47-68 (271)
353 1zcb_A G alpha I/13; GTP-bindi 96.8 0.00093 3.2E-08 49.9 3.5 23 6-28 31-53 (362)
354 2iyv_A Shikimate kinase, SK; t 96.8 0.00087 3E-08 44.8 3.0 21 10-30 4-24 (184)
355 2ihy_A ABC transporter, ATP-bi 96.8 0.00093 3.2E-08 48.1 3.3 22 10-31 49-70 (279)
356 1rz3_A Hypothetical protein rb 96.8 0.0011 3.6E-08 45.2 3.4 24 7-30 21-44 (201)
357 1rj9_A FTSY, signal recognitio 96.8 0.00082 2.8E-08 49.0 3.0 23 8-30 102-124 (304)
358 2jeo_A Uridine-cytidine kinase 96.7 0.001 3.6E-08 46.7 3.4 24 7-30 24-47 (245)
359 2kjq_A DNAA-related protein; s 96.7 0.00062 2.1E-08 44.3 2.1 22 10-31 38-59 (149)
360 2nq2_C Hypothetical ABC transp 96.7 0.0009 3.1E-08 47.5 3.0 22 10-31 33-54 (253)
361 1gtv_A TMK, thymidylate kinase 96.7 0.00026 8.8E-09 48.5 0.2 21 10-30 2-22 (214)
362 2yz2_A Putative ABC transporte 96.7 0.00094 3.2E-08 47.7 3.0 22 10-31 35-56 (266)
363 2x8a_A Nuclear valosin-contain 96.7 0.0009 3.1E-08 48.0 2.9 22 10-31 46-67 (274)
364 1ixz_A ATP-dependent metallopr 96.7 0.00099 3.4E-08 47.0 3.1 22 10-31 51-72 (254)
365 3r20_A Cytidylate kinase; stru 96.7 0.0011 3.9E-08 46.4 3.3 23 8-30 9-31 (233)
366 1zuh_A Shikimate kinase; alpha 96.7 0.0012 4.2E-08 43.4 3.3 21 10-30 9-29 (168)
367 2pjz_A Hypothetical protein ST 96.7 0.0012 4E-08 47.2 3.3 22 10-31 32-53 (263)
368 3b9q_A Chloroplast SRP recepto 96.7 0.0011 3.6E-08 48.4 3.0 23 8-30 100-122 (302)
369 2pez_A Bifunctional 3'-phospho 96.6 0.0015 5.2E-08 43.5 3.5 23 8-30 5-27 (179)
370 3nh6_A ATP-binding cassette SU 96.6 0.00071 2.4E-08 49.4 1.9 22 10-31 82-103 (306)
371 3jvv_A Twitching mobility prot 96.6 0.0011 3.9E-08 49.4 3.0 21 10-30 125-145 (356)
372 2f6r_A COA synthase, bifunctio 96.6 0.0013 4.3E-08 47.4 3.1 24 7-30 74-97 (281)
373 4e22_A Cytidylate kinase; P-lo 96.6 0.0014 4.9E-08 46.3 3.3 22 8-29 27-48 (252)
374 3e70_C DPA, signal recognition 96.6 0.0017 5.7E-08 47.9 3.7 24 7-30 128-151 (328)
375 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0013 4.5E-08 45.3 3.0 21 10-30 25-45 (235)
376 1in4_A RUVB, holliday junction 96.6 0.0012 4.3E-08 48.6 2.9 23 9-31 52-74 (334)
377 2ewv_A Twitching motility prot 96.6 0.0014 4.7E-08 49.2 3.2 21 10-30 138-158 (372)
378 1sq5_A Pantothenate kinase; P- 96.6 0.0014 4.8E-08 47.8 3.1 24 7-30 79-102 (308)
379 3tui_C Methionine import ATP-b 96.6 0.0015 5E-08 48.9 3.2 22 10-31 56-77 (366)
380 1m7g_A Adenylylsulfate kinase; 96.6 0.0014 4.9E-08 44.9 3.0 23 8-30 25-47 (211)
381 2vp4_A Deoxynucleoside kinase; 96.6 0.0011 3.6E-08 46.3 2.3 25 7-31 19-43 (230)
382 2p65_A Hypothetical protein PF 96.5 0.0011 3.7E-08 44.0 2.3 24 8-31 43-66 (187)
383 3fvq_A Fe(3+) IONS import ATP- 96.5 0.0012 4.1E-08 49.3 2.7 22 10-31 32-53 (359)
384 4eaq_A DTMP kinase, thymidylat 96.5 0.002 6.9E-08 44.9 3.7 24 7-30 25-48 (229)
385 1ltq_A Polynucleotide kinase; 96.5 0.0015 5.1E-08 47.2 3.2 22 9-30 3-24 (301)
386 1z47_A CYSA, putative ABC-tran 96.5 0.0015 5.1E-08 48.7 3.2 22 10-31 43-64 (355)
387 3bos_A Putative DNA replicatio 96.5 0.0016 5.5E-08 45.0 3.2 23 8-30 52-74 (242)
388 1iy2_A ATP-dependent metallopr 96.5 0.0015 5.1E-08 46.8 3.1 22 10-31 75-96 (278)
389 2yyz_A Sugar ABC transporter, 96.5 0.0015 5.3E-08 48.7 3.2 22 10-31 31-52 (359)
390 2it1_A 362AA long hypothetical 96.5 0.0016 5.5E-08 48.6 3.2 22 10-31 31-52 (362)
391 3rlf_A Maltose/maltodextrin im 96.5 0.0016 5.5E-08 48.9 3.2 22 10-31 31-52 (381)
392 2gza_A Type IV secretion syste 96.5 0.0013 4.4E-08 49.1 2.6 22 10-31 177-198 (361)
393 2bbs_A Cystic fibrosis transme 96.5 0.0014 4.9E-08 47.4 2.7 22 10-31 66-87 (290)
394 1g29_1 MALK, maltose transport 96.5 0.0017 5.9E-08 48.7 3.2 22 10-31 31-52 (372)
395 1v43_A Sugar-binding transport 96.5 0.0018 6.1E-08 48.6 3.2 22 10-31 39-60 (372)
396 2grj_A Dephospho-COA kinase; T 96.5 0.0022 7.5E-08 43.5 3.4 24 8-31 12-35 (192)
397 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.0014 4.7E-08 48.4 2.5 22 10-31 173-194 (330)
398 2og2_A Putative signal recogni 96.5 0.0017 5.8E-08 48.5 3.0 23 8-30 157-179 (359)
399 1lv7_A FTSH; alpha/beta domain 96.5 0.002 6.7E-08 45.5 3.3 23 8-30 45-67 (257)
400 2cvh_A DNA repair and recombin 96.5 0.0018 6.2E-08 44.3 3.0 21 10-30 22-42 (220)
401 3gmt_A Adenylate kinase; ssgci 96.4 0.0023 7.8E-08 44.7 3.4 25 6-30 6-30 (230)
402 2w58_A DNAI, primosome compone 96.4 0.0022 7.5E-08 43.5 3.2 22 9-30 55-76 (202)
403 3nwj_A ATSK2; P loop, shikimat 96.4 0.0018 6E-08 45.9 2.8 22 9-30 49-70 (250)
404 2yhs_A FTSY, cell division pro 96.4 0.0019 6.3E-08 50.2 3.1 23 8-30 293-315 (503)
405 1n0w_A DNA repair protein RAD5 96.4 0.0021 7E-08 44.7 3.1 22 10-31 26-47 (243)
406 3crm_A TRNA delta(2)-isopenten 96.4 0.0027 9.2E-08 46.6 3.7 22 9-30 6-27 (323)
407 1p9r_A General secretion pathw 96.4 0.002 6.8E-08 49.1 3.0 22 10-31 169-190 (418)
408 3d3q_A TRNA delta(2)-isopenten 96.3 0.0029 9.8E-08 46.8 3.6 22 9-30 8-29 (340)
409 1cr0_A DNA primase/helicase; R 96.3 0.0018 6E-08 46.8 2.5 22 10-31 37-58 (296)
410 3d31_A Sulfate/molybdate ABC t 96.3 0.0015 5E-08 48.6 2.0 22 10-31 28-49 (348)
411 1njg_A DNA polymerase III subu 96.3 0.0024 8.2E-08 43.9 3.0 21 10-30 47-67 (250)
412 3zvl_A Bifunctional polynucleo 96.3 0.0024 8.1E-08 48.6 3.1 23 8-30 258-280 (416)
413 3gd7_A Fusion complex of cysti 96.3 0.0021 7.1E-08 48.5 2.7 22 10-31 49-70 (390)
414 2chg_A Replication factor C sm 96.3 0.0026 8.8E-08 43.2 3.0 21 10-30 40-60 (226)
415 1tue_A Replication protein E1; 96.3 0.0019 6.7E-08 44.3 2.3 21 10-30 60-80 (212)
416 2oap_1 GSPE-2, type II secreti 96.3 0.0021 7.1E-08 50.2 2.7 22 10-31 262-283 (511)
417 4fcw_A Chaperone protein CLPB; 96.2 0.0041 1.4E-07 44.9 3.9 23 8-30 47-69 (311)
418 1p5z_B DCK, deoxycytidine kina 96.2 0.0021 7.1E-08 45.6 2.3 24 7-30 23-46 (263)
419 3syl_A Protein CBBX; photosynt 96.2 0.003 1E-07 45.6 3.2 24 7-30 66-89 (309)
420 3h4m_A Proteasome-activating n 96.2 0.003 1E-07 45.1 3.1 24 8-31 51-74 (285)
421 3t15_A Ribulose bisphosphate c 96.2 0.0027 9.1E-08 45.9 2.7 24 7-30 35-58 (293)
422 1svm_A Large T antigen; AAA+ f 96.2 0.0029 1E-07 47.5 3.0 22 9-30 170-191 (377)
423 3b9p_A CG5977-PA, isoform A; A 96.2 0.0032 1.1E-07 45.3 3.1 24 8-31 54-77 (297)
424 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.0035 1.2E-07 44.1 3.2 23 8-30 39-61 (262)
425 1a7j_A Phosphoribulokinase; tr 96.2 0.0017 5.9E-08 46.9 1.6 23 8-30 5-27 (290)
426 1q3t_A Cytidylate kinase; nucl 96.2 0.0037 1.3E-07 43.6 3.3 24 7-30 15-38 (236)
427 1oxx_K GLCV, glucose, ABC tran 96.1 0.0015 5E-08 48.7 1.2 22 10-31 33-54 (353)
428 1nij_A Hypothetical protein YJ 96.1 0.0026 8.9E-08 46.6 2.6 24 8-31 4-27 (318)
429 2qmh_A HPR kinase/phosphorylas 96.1 0.0041 1.4E-07 42.5 3.3 24 8-31 34-57 (205)
430 3n70_A Transport activator; si 96.1 0.0039 1.3E-07 40.1 3.0 24 8-31 24-47 (145)
431 2npi_A Protein CLP1; CLP1-PCF1 96.1 0.0024 8.3E-08 49.2 2.3 23 9-31 139-161 (460)
432 1d2n_A N-ethylmaleimide-sensit 96.1 0.0056 1.9E-07 43.5 4.0 25 7-31 63-87 (272)
433 3ake_A Cytidylate kinase; CMP 96.1 0.0044 1.5E-07 42.0 3.3 21 10-30 4-24 (208)
434 2obl_A ESCN; ATPase, hydrolase 96.1 0.0033 1.1E-07 46.6 2.8 22 10-31 73-94 (347)
435 1l8q_A Chromosomal replication 96.0 0.0036 1.2E-07 45.7 2.9 22 9-30 38-59 (324)
436 4ido_A Atlastin-1; GTPase, GTP 96.0 0.019 6.6E-07 44.0 6.9 24 6-29 65-88 (457)
437 1vma_A Cell division protein F 96.0 0.004 1.4E-07 45.4 3.1 23 8-30 104-126 (306)
438 3cf0_A Transitional endoplasmi 96.0 0.0044 1.5E-07 44.9 3.2 24 8-31 49-72 (301)
439 1nlf_A Regulatory protein REPA 96.0 0.0033 1.1E-07 45.0 2.5 21 10-30 32-52 (279)
440 2dr3_A UPF0273 protein PH0284; 96.0 0.0037 1.3E-07 43.5 2.7 21 10-30 25-45 (247)
441 1ofh_A ATP-dependent HSL prote 95.9 0.0046 1.6E-07 44.5 3.1 23 8-30 50-72 (310)
442 2px0_A Flagellar biosynthesis 95.9 0.0037 1.3E-07 45.4 2.5 22 8-29 105-126 (296)
443 3b5x_A Lipid A export ATP-bind 95.9 0.0049 1.7E-07 48.9 3.3 22 10-31 371-392 (582)
444 3foz_A TRNA delta(2)-isopenten 95.9 0.0065 2.2E-07 44.4 3.6 23 9-31 11-33 (316)
445 1sxj_C Activator 1 40 kDa subu 95.9 0.0046 1.6E-07 45.5 2.9 22 10-31 48-69 (340)
446 3kta_A Chromosome segregation 95.9 0.0047 1.6E-07 41.1 2.7 21 10-30 28-48 (182)
447 1sxj_E Activator 1 40 kDa subu 95.9 0.0039 1.3E-07 46.0 2.5 21 10-30 38-58 (354)
448 3b60_A Lipid A export ATP-bind 95.9 0.0042 1.4E-07 49.2 2.8 22 10-31 371-392 (582)
449 2qby_A CDC6 homolog 1, cell di 95.9 0.004 1.4E-07 46.1 2.5 23 8-30 45-67 (386)
450 3ld9_A DTMP kinase, thymidylat 95.9 0.0069 2.4E-07 42.1 3.5 26 5-30 18-43 (223)
451 1fnn_A CDC6P, cell division co 95.9 0.0056 1.9E-07 45.5 3.3 22 10-31 46-67 (389)
452 3euj_A Chromosome partition pr 95.9 0.005 1.7E-07 47.7 3.1 21 10-30 31-51 (483)
453 2dpy_A FLII, flagellum-specifi 95.9 0.0045 1.5E-07 47.4 2.8 22 10-31 159-180 (438)
454 2ocp_A DGK, deoxyguanosine kin 95.8 0.0059 2E-07 42.6 3.1 22 9-30 3-24 (241)
455 3v9p_A DTMP kinase, thymidylat 95.8 0.0051 1.7E-07 42.9 2.6 24 7-30 24-47 (227)
456 1yqt_A RNAse L inhibitor; ATP- 95.8 0.0065 2.2E-07 47.8 3.5 22 10-31 49-70 (538)
457 2ga8_A Hypothetical 39.9 kDa p 95.8 0.0078 2.7E-07 44.8 3.7 24 7-30 23-46 (359)
458 4edh_A DTMP kinase, thymidylat 95.8 0.0067 2.3E-07 41.8 3.1 23 8-30 6-28 (213)
459 2r8r_A Sensor protein; KDPD, P 95.8 0.0082 2.8E-07 41.8 3.6 24 5-28 3-26 (228)
460 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.0061 2.1E-07 44.7 3.1 24 8-31 45-68 (322)
461 2yl4_A ATP-binding cassette SU 95.8 0.0045 1.5E-07 49.2 2.5 22 10-31 372-393 (595)
462 3eie_A Vacuolar protein sortin 95.7 0.0066 2.3E-07 44.4 3.2 24 8-31 51-74 (322)
463 3qf4_B Uncharacterized ABC tra 95.7 0.0049 1.7E-07 49.0 2.7 22 10-31 383-404 (598)
464 1c9k_A COBU, adenosylcobinamid 95.7 0.0064 2.2E-07 40.8 2.8 21 11-31 2-22 (180)
465 2h92_A Cytidylate kinase; ross 95.7 0.0062 2.1E-07 41.7 2.8 23 8-30 3-25 (219)
466 1sxj_D Activator 1 41 kDa subu 95.7 0.0063 2.2E-07 44.7 3.0 22 10-31 60-81 (353)
467 3exa_A TRNA delta(2)-isopenten 95.7 0.0072 2.5E-07 44.2 3.2 23 9-31 4-26 (322)
468 1pzn_A RAD51, DNA repair and r 95.7 0.0054 1.8E-07 45.5 2.5 22 10-31 133-154 (349)
469 4b4t_M 26S protease regulatory 95.7 0.0075 2.6E-07 46.1 3.3 24 8-31 215-238 (434)
470 3a8t_A Adenylate isopentenyltr 95.7 0.0098 3.4E-07 43.9 3.8 23 9-31 41-63 (339)
471 2qgz_A Helicase loader, putati 95.6 0.0079 2.7E-07 43.8 3.2 23 8-30 152-174 (308)
472 1azs_C GS-alpha; complex (lyas 95.6 0.0071 2.4E-07 45.8 3.0 23 6-28 38-60 (402)
473 1f2t_A RAD50 ABC-ATPase; DNA d 95.6 0.0081 2.8E-07 38.9 3.0 19 11-29 26-44 (149)
474 4b4t_K 26S protease regulatory 95.6 0.0079 2.7E-07 45.9 3.3 23 8-30 206-228 (428)
475 4a82_A Cystic fibrosis transme 95.6 0.0043 1.5E-07 49.1 1.9 22 10-31 369-390 (578)
476 3tqf_A HPR(Ser) kinase; transf 95.6 0.008 2.7E-07 40.1 2.8 24 9-32 17-40 (181)
477 2qen_A Walker-type ATPase; unk 95.6 0.0076 2.6E-07 44.0 3.1 22 10-31 33-54 (350)
478 2v1u_A Cell division control p 95.6 0.0056 1.9E-07 45.4 2.4 23 8-30 44-66 (387)
479 3j16_B RLI1P; ribosome recycli 95.6 0.0077 2.6E-07 48.0 3.2 22 10-31 105-126 (608)
480 3ozx_A RNAse L inhibitor; ATP 95.6 0.0074 2.5E-07 47.5 3.1 22 10-31 27-48 (538)
481 4b4t_L 26S protease subunit RP 95.6 0.0084 2.9E-07 45.9 3.3 24 7-30 214-237 (437)
482 3qf4_A ABC transporter, ATP-bi 95.5 0.0057 1.9E-07 48.6 2.4 22 10-31 371-392 (587)
483 2r62_A Cell division protease 95.5 0.0033 1.1E-07 44.5 0.9 21 10-30 46-66 (268)
484 3uk6_A RUVB-like 2; hexameric 95.5 0.007 2.4E-07 44.8 2.7 22 9-30 71-92 (368)
485 3pxg_A Negative regulator of g 95.5 0.0075 2.6E-07 46.5 2.9 23 8-30 201-223 (468)
486 2axn_A 6-phosphofructo-2-kinas 95.5 0.0099 3.4E-07 46.5 3.6 22 8-29 35-56 (520)
487 3co5_A Putative two-component 95.5 0.0039 1.3E-07 40.0 1.1 23 8-30 27-49 (143)
488 1um8_A ATP-dependent CLP prote 95.5 0.0088 3E-07 44.6 3.1 23 8-30 72-94 (376)
489 3ozx_A RNAse L inhibitor; ATP 95.5 0.0087 3E-07 47.1 3.1 22 10-31 296-317 (538)
490 2z4s_A Chromosomal replication 95.4 0.0085 2.9E-07 45.9 2.9 23 8-30 130-152 (440)
491 2qp9_X Vacuolar protein sortin 95.4 0.0089 3E-07 44.4 3.0 23 9-31 85-107 (355)
492 3pfi_A Holliday junction ATP-d 95.4 0.0091 3.1E-07 43.7 3.0 24 8-31 55-78 (338)
493 2fna_A Conserved hypothetical 95.4 0.0074 2.5E-07 44.2 2.5 22 10-31 32-53 (357)
494 3bk7_A ABC transporter ATP-bin 95.4 0.0099 3.4E-07 47.4 3.3 22 10-31 119-140 (607)
495 3lv8_A DTMP kinase, thymidylat 95.4 0.0085 2.9E-07 42.0 2.6 23 8-30 27-49 (236)
496 3hws_A ATP-dependent CLP prote 95.4 0.0098 3.4E-07 44.2 3.1 24 7-30 50-73 (363)
497 1yqt_A RNAse L inhibitor; ATP- 95.4 0.011 3.8E-07 46.4 3.5 22 10-31 314-335 (538)
498 2qby_B CDC6 homolog 3, cell di 95.4 0.008 2.8E-07 44.6 2.5 22 9-30 46-67 (384)
499 3m6a_A ATP-dependent protease 95.3 0.01 3.5E-07 46.7 3.1 23 8-30 108-130 (543)
500 3d8b_A Fidgetin-like protein 1 95.3 0.011 3.8E-07 43.9 3.2 25 7-31 116-140 (357)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.8e-40 Score=232.99 Aligned_cols=152 Identities=30% Similarity=0.526 Sum_probs=130.4
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
+.+.+||+++|++|||||||++||+.+.|...+.+|++.++ .+...+++..+.+++|||+|+++|..+++.++++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 45679999999999999999999999999999999998776 56778899999999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
++|||+++++||+.+ ..|+..+.... +++|++|||||+|+...+. +..++++++++++++ +|+||||
T Consensus 90 ilv~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~----------V~~~e~~~~a~~~~~-~~~e~SA 157 (216)
T 4dkx_A 90 VVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSA 157 (216)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEEBT
T ss_pred EEEeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcCc----------ccHHHHhhHHHHhCC-eeEEEeC
Confidence 999999999999998 88988887765 7899999999999988766 899999999999998 8999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|+||
T Consensus 158 ktg~nV 163 (216)
T 4dkx_A 158 KAGYNV 163 (216)
T ss_dssp TTTBSH
T ss_pred CCCcCH
Confidence 999986
No 2
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=197.42 Aligned_cols=156 Identities=33% Similarity=0.551 Sum_probs=136.2
Q ss_pred CCCCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccC
Q 030961 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (168)
Q Consensus 1 m~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 79 (168)
|+...++.+||+++|.+|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 666678899999999999999999999999988877788887766 4567788989999999999999999999999999
Q ss_pred CcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEE
Q 030961 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (168)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (168)
+|++++|||++++.++..+ ..|+..+.+..++.|+++|+||+|+...+. +..+++..++...++ ++++
T Consensus 82 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~ 149 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERKV----------VETEDAYKFAGQMGI-QLFE 149 (181)
T ss_dssp CSEEEEEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-CEEE
T ss_pred CCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhcc----------cCHHHHHHHHHHcCC-eEEE
Confidence 9999999999999999998 789999988778899999999999987655 778889999999998 8999
Q ss_pred ecccCccCC
Q 030961 160 CSSKTQQVC 168 (168)
Q Consensus 160 ~Sa~~~~~i 168 (168)
+||++|.||
T Consensus 150 ~Sa~~~~gi 158 (181)
T 3tw8_B 150 TSAKENVNV 158 (181)
T ss_dssp CBTTTTBSH
T ss_pred EECCCCCCH
Confidence 999999985
No 3
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.4e-34 Score=199.68 Aligned_cols=156 Identities=46% Similarity=0.823 Sum_probs=140.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
..+.+||+++|.+|+|||||+++|.+..+...+.++.+..+...+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 35689999999999999999999999999888889998888888889999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
+|||++++.++..+...|+..+.+..++.|+++|+||+|+..+.. +.+..+++..++..+++..|+++||++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 171 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGS--------DDVTKQEGDDLCQKLGCVAYIEASSVA 171 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTT--------TCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCC--------CcccHHHHHHHHHhcCCCEEEEeecCC
Confidence 999999999999976789999988778899999999999975421 237889999999999995599999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
|+||
T Consensus 172 ~~gi 175 (194)
T 3reg_A 172 KIGL 175 (194)
T ss_dssp TBSH
T ss_pred CCCH
Confidence 9985
No 4
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.2e-34 Score=197.73 Aligned_cols=153 Identities=27% Similarity=0.446 Sum_probs=137.5
Q ss_pred CcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 4 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
++.+.+||+++|.+|+|||||+++|.++.+...+.++.+..+...+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 2 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 45678999999999999999999999888888888998888877888899999999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
++|||++++++++.+ ..|+..+.+.. .+.|+++|+||+|+...+. +..++++.+++.+++ +|+++|
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 149 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----------ISYEEGKALAESWNA-AFLESS 149 (181)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEECC
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcce----------ecHHHHHHHHHHhCC-cEEEEe
Confidence 999999999999998 78888876654 4799999999999976655 888999999999998 899999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|++|+||
T Consensus 150 a~~~~~v 156 (181)
T 3t5g_A 150 AKENQTA 156 (181)
T ss_dssp TTSHHHH
T ss_pred cCCCCCH
Confidence 9999874
No 5
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=2.4e-35 Score=201.60 Aligned_cols=156 Identities=29% Similarity=0.616 Sum_probs=109.1
Q ss_pred CCCCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccC
Q 030961 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (168)
Q Consensus 1 m~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 79 (168)
|+...++.+||+++|++|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..++++
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (183)
T 2fu5_C 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 80 (183)
T ss_dssp --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc
Confidence 666667899999999999999999999999888777777777666 4567788889999999999999999999999999
Q ss_pred CcEEEEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
+|++++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...+. +..++++.++..+++ +++
T Consensus 81 ~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~ 148 (183)
T 2fu5_C 81 AMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI-KFM 148 (183)
T ss_dssp CSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------SCHHHHHHHHHHHTC-EEE
T ss_pred CCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCccCc----------CCHHHHHHHHHHcCC-eEE
Confidence 9999999999999999998 78998888765 6799999999999976654 778899999999998 999
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|.||
T Consensus 149 ~~Sa~~~~~i 158 (183)
T 2fu5_C 149 ETSAKANINV 158 (183)
T ss_dssp ECCC---CCH
T ss_pred EEeCCCCCCH
Confidence 9999999985
No 6
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=5.3e-35 Score=205.09 Aligned_cols=163 Identities=38% Similarity=0.661 Sum_probs=138.6
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
....+||+++|.+|||||||+++|.++.+...+.+|.+..+.+.+.+++..+.+.+|||+|++.+..++..+++++|+++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 34689999999999999999999999999888889998888777888889999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh--cCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
+|||+++++++..+...|+..+.+..++.|+++|+||+|+..+..... .....+.+..+++..++..+++.+|+++||
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 183 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEecc
Confidence 999999999999844899999998888899999999999976421100 011223478899999999999878999999
Q ss_pred cCccC
Q 030961 163 KTQQV 167 (168)
Q Consensus 163 ~~~~~ 167 (168)
++|.|
T Consensus 184 ~~g~g 188 (214)
T 3q3j_B 184 FTSEK 188 (214)
T ss_dssp TTCHH
T ss_pred CCCcc
Confidence 99987
No 7
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=9.5e-35 Score=203.14 Aligned_cols=165 Identities=80% Similarity=1.283 Sum_probs=140.9
Q ss_pred CCCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCc
Q 030961 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (168)
Q Consensus 2 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (168)
.|...+.+||+++|++|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|
T Consensus 3 ~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 82 (212)
T 2j0v_A 3 HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGAD 82 (212)
T ss_dssp CCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCS
T ss_pred CCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCC
Confidence 35556789999999999999999999999998888888888888777788899999999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 82 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
++++|||++++.++..+...|+..+....++.|+++|+||+|+...+....+ ....+..+++..++..++..+|+++|
T Consensus 83 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (212)
T 2j0v_A 83 IFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD--HTNVITSTQGEELRKQIGAAAYIECS 160 (212)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT--CSSCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc--ccCCCCHHHHHHHHHHcCCceEEEcc
Confidence 9999999999999999855899999887778999999999999776431111 11235788899999999976899999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|++|+||
T Consensus 161 a~~g~gi 167 (212)
T 2j0v_A 161 SKTQQNV 167 (212)
T ss_dssp TTTCTTH
T ss_pred CCCCCCH
Confidence 9999985
No 8
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-34 Score=199.13 Aligned_cols=165 Identities=51% Similarity=0.965 Sum_probs=141.7
Q ss_pred CcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 4 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
...+.+||+++|.+|+|||||+++|.+..+...+.+|.+..+...+.+++..+.+.+||+||++.+..++..+++++|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 34578999999999999999999999998888888888888777788888899999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh--cCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
++|||++++.++..+...|+..+.+..++.|+++|+||+|+........ .....+.+..+++..++..++..+|+++|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 173 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence 9999999999999984489999988777899999999999976532111 11122347788999999999976899999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|++|+||
T Consensus 174 a~~g~gi 180 (194)
T 2atx_A 174 ALTQKGL 180 (194)
T ss_dssp TTTCTTH
T ss_pred CCCCCCH
Confidence 9999985
No 9
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=2e-35 Score=201.60 Aligned_cols=167 Identities=81% Similarity=1.328 Sum_probs=124.3
Q ss_pred CCCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCc
Q 030961 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (168)
Q Consensus 2 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (168)
+|...+.+||+++|++|+|||||+++|.+..+...+.++.+..+...+.+++..+.+.+|||||++.+..++..+++++|
T Consensus 2 s~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 81 (182)
T 3bwd_D 2 SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (182)
T ss_dssp -----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence 45667789999999999999999999999988888888887776656667778889999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 82 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
++++|||++++.+++.+...|+..+....++.|+++|+||+|+...+...........+..+++..++..++..+|+++|
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 161 (182)
T 3bwd_D 82 VFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECS 161 (182)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEE
Confidence 99999999999999998448999998877789999999999998765422222333446788999999999976899999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|++|+||
T Consensus 162 a~~~~gi 168 (182)
T 3bwd_D 162 SKSQENV 168 (182)
T ss_dssp TTTCTTH
T ss_pred CCCCCCH
Confidence 9999985
No 10
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=9.1e-35 Score=202.70 Aligned_cols=168 Identities=38% Similarity=0.712 Sum_probs=138.5
Q ss_pred CCCCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCC
Q 030961 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80 (168)
Q Consensus 1 m~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (168)
|+....+.+||+++|.+|+|||||+++|.+..+...+.++.+..+...+.+++..+.+.+|||+|++.+..++..+++++
T Consensus 21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 100 (205)
T 1gwn_A 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 100 (205)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCC
Confidence 55556678999999999999999999999999988888888887777777888899999999999999999999999999
Q ss_pred cEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh--cCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 81 DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
+++++|||++++.++..+...|+..+.+..++.|+++|+||+|+........ .....+.+..++++.+++.++..+|+
T Consensus 101 d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 180 (205)
T 1gwn_A 101 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYI 180 (205)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEE
Confidence 9999999999999999876789999888777899999999999975422111 01223447888999999998855999
Q ss_pred Eeccc-CccCC
Q 030961 159 ECSSK-TQQVC 168 (168)
Q Consensus 159 ~~Sa~-~~~~i 168 (168)
++||+ +|+||
T Consensus 181 e~SAk~~~~gv 191 (205)
T 1gwn_A 181 ECSALQSENSV 191 (205)
T ss_dssp ECCTTTCHHHH
T ss_pred EeeeccCCcCH
Confidence 99999 57764
No 11
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=1.9e-34 Score=197.60 Aligned_cols=165 Identities=38% Similarity=0.716 Sum_probs=138.6
Q ss_pred CcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 4 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
.+.+.+||+++|++|+|||||+++|.+..+...+.++.+..+...+.+++..+.+.+||+||++.+..++..+++++|++
T Consensus 3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 35678999999999999999999999999888888888888777778888899999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh--cCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
++|||++++.++..+...|+..+.+..++.|+++|+||+|+........ .....+.+..+++..++..++..+|+++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 162 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 162 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence 9999999999999876789998888777899999999999975421111 01223447888999999999855999999
Q ss_pred cc-CccCC
Q 030961 162 SK-TQQVC 168 (168)
Q Consensus 162 a~-~~~~i 168 (168)
|+ +|+||
T Consensus 163 a~~~~~gi 170 (184)
T 1m7b_A 163 ALQSENSV 170 (184)
T ss_dssp TTTBHHHH
T ss_pred ecCCCcCH
Confidence 98 57764
No 12
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=5e-34 Score=198.66 Aligned_cols=156 Identities=29% Similarity=0.595 Sum_probs=138.4
Q ss_pred CCCCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccC
Q 030961 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (168)
Q Consensus 1 m~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 79 (168)
|+...+..+||+++|++|+|||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+|||||++.+..++..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence 6656678899999999999999999999999988888888887774 567788889999999999999999999999999
Q ss_pred CcEEEEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
+|++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..+++..++..+++ +++
T Consensus 81 ~d~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~ 148 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANKM-PFL 148 (206)
T ss_dssp CSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEE
T ss_pred CCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEE
Confidence 9999999999999999998 78998888765 6799999999999987654 778889999999998 899
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|.||
T Consensus 149 ~~Sa~~g~gi 158 (206)
T 2bcg_Y 149 ETSALDSTNV 158 (206)
T ss_dssp ECCTTTCTTH
T ss_pred EEeCCCCCCH
Confidence 9999999985
No 13
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=197.41 Aligned_cols=151 Identities=23% Similarity=0.407 Sum_probs=131.3
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
..+.+||+++|.+|||||||+++|+++.+...+.+|.+..+.....+++..+.+.+|||+|++.+..+ ..+++++++++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 35689999999999999999999999998888889988888777888999999999999999988775 66889999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC----CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEe
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 160 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (168)
+|||++++++++.+ ..|+..+.+.. .+.|+++|+||+|+...+. +..+++.+++..+++ +|+++
T Consensus 97 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~ 164 (187)
T 3c5c_A 97 VVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ----------VTKAEGVALAGRFGC-LFFEV 164 (187)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc----------cCHHHHHHHHHHcCC-cEEEE
Confidence 99999999999998 78988887763 5899999999999976655 788999999999998 99999
Q ss_pred cc-cCccCC
Q 030961 161 SS-KTQQVC 168 (168)
Q Consensus 161 Sa-~~~~~i 168 (168)
|| ++|+||
T Consensus 165 Sa~~~g~gv 173 (187)
T 3c5c_A 165 SACLDFEHV 173 (187)
T ss_dssp CSSSCSHHH
T ss_pred eecCccccH
Confidence 99 899875
No 14
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.5e-34 Score=196.51 Aligned_cols=152 Identities=32% Similarity=0.495 Sum_probs=137.6
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
..+.+||+++|.+|+|||||+++|.+..+...+.++.+..+.....+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 45789999999999999999999999988888888888888778888999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
+|||++++.+++.+ ..|+..+.+.. .+.|+++|+||+|+...+. +..++++.++..+++ +|+++||
T Consensus 95 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 162 (183)
T 3kkq_A 95 IVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI-PYIETSA 162 (183)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----------SCHHHHHHHHHHHTC-CEEEEBC
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchhccC----------cCHHHHHHHHHHhCC-eEEEecc
Confidence 99999999999998 78888876643 6799999999999987655 888999999999997 8999999
Q ss_pred c-CccCC
Q 030961 163 K-TQQVC 168 (168)
Q Consensus 163 ~-~~~~i 168 (168)
+ +|+||
T Consensus 163 ~~~~~~v 169 (183)
T 3kkq_A 163 KDPPLNV 169 (183)
T ss_dssp SSSCBSH
T ss_pred CCCCCCH
Confidence 9 99885
No 15
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=7.7e-34 Score=196.94 Aligned_cols=164 Identities=50% Similarity=0.862 Sum_probs=132.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
..+.+||+++|.+|+|||||+++|.+..+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 45689999999999999999999999888888888888777777888999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh--cCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
+|||++++.++..+...|+..+....++.|+++|+||+|+........ .......+..+++..++..++..+|+++||
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 176 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA 176 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEec
Confidence 999999999999984489999988777899999999999976421100 011123477888999999998778999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|+||
T Consensus 177 ~~g~gi 182 (201)
T 2q3h_A 177 LTQKNL 182 (201)
T ss_dssp TTCTTH
T ss_pred CCCCCH
Confidence 999985
No 16
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=4.5e-34 Score=195.61 Aligned_cols=156 Identities=28% Similarity=0.519 Sum_probs=137.6
Q ss_pred CCCCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccC
Q 030961 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (168)
Q Consensus 1 m~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 79 (168)
|+...++.+||+++|++|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++.
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 82 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence 555567889999999999999999999999988887788887666 4567788888999999999999999999999999
Q ss_pred CcEEEEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
+|++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..+++..++...++ +++
T Consensus 83 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~ 150 (186)
T 2bme_A 83 AAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENEL-MFL 150 (186)
T ss_dssp CSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEE
T ss_pred CCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEE
Confidence 9999999999999999998 78888877765 6899999999999976554 778889999999998 999
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|+||
T Consensus 151 ~~Sa~~~~gi 160 (186)
T 2bme_A 151 ETSALTGENV 160 (186)
T ss_dssp ECCTTTCTTH
T ss_pred EecCCCCCCH
Confidence 9999999985
No 17
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=3.9e-34 Score=194.80 Aligned_cols=156 Identities=31% Similarity=0.510 Sum_probs=137.2
Q ss_pred CCCCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCC
Q 030961 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80 (168)
Q Consensus 1 m~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (168)
|...+...+||+++|.+|+|||||+++|.+..+...+.++.+..+.....+++..+.+.+|||||++.+..++..+++.+
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 81 (181)
T 2fn4_A 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81 (181)
T ss_dssp --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence 55556778999999999999999999999998888888888888777788899999999999999999999999999999
Q ss_pred cEEEEEEeCCChhHHHHHHHhHHHHHchh-C-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 81 DVFVLAFSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~l~~~-~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
|++++|||++++.++..+ ..|+..+.+. . .+.|+++|+||+|+...+. +..+++..++...++ +++
T Consensus 82 d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~ 149 (181)
T 2fn4_A 82 HGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGASHHV-AYF 149 (181)
T ss_dssp SEEEEEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEE
T ss_pred CEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEE
Confidence 999999999999999998 6787777443 2 5799999999999987654 778889999999998 999
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|.||
T Consensus 150 ~~Sa~~~~gv 159 (181)
T 2fn4_A 150 EASAKLRLNV 159 (181)
T ss_dssp ECBTTTTBSH
T ss_pred EecCCCCCCH
Confidence 9999999985
No 18
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=8e-34 Score=195.87 Aligned_cols=153 Identities=31% Similarity=0.635 Sum_probs=137.6
Q ss_pred CcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcE
Q 030961 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (168)
Q Consensus 4 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (168)
..+..+||+++|.+|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 345789999999999999999999999998888888887666 4567788889999999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
+++|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+...+. +..+++..++..+++ +++++|
T Consensus 92 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 159 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETS 159 (196)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEEEC
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-cEEEEe
Confidence 9999999999999998 78998888776 5799999999999987765 788899999999998 899999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|++|.||
T Consensus 160 a~~g~gv 166 (196)
T 3tkl_A 160 AKNATNV 166 (196)
T ss_dssp TTTCTTH
T ss_pred CCCCCCH
Confidence 9999985
No 19
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.6e-33 Score=191.98 Aligned_cols=152 Identities=33% Similarity=0.583 Sum_probs=135.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
+.+.+||+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 56789999999999999999999999988877778877766 45677888899999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+. +..++++.++..+++ +++++||
T Consensus 89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 156 (181)
T 2efe_B 89 IIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDARK----------VTAEDAQTYAQENGL-FFMETSA 156 (181)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEECCS
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCccccccc----------CCHHHHHHHHHHcCC-EEEEEEC
Confidence 999999999999998 78888888775 6899999999999976654 778899999999998 8999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|+||
T Consensus 157 ~~g~gi 162 (181)
T 2efe_B 157 KTATNV 162 (181)
T ss_dssp SSCTTH
T ss_pred CCCCCH
Confidence 999985
No 20
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1e-33 Score=191.12 Aligned_cols=152 Identities=32% Similarity=0.599 Sum_probs=128.3
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
.++.+||+++|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 457899999999999999999999999888777888877664 5677788899999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..++++.++..+++ +++++||
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 150 (170)
T 1z08_A 83 ILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA-KHYHTSA 150 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecC
Confidence 999999999999998 78888877655 5799999999999987654 778899999999997 8999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|+||
T Consensus 151 ~~~~gi 156 (170)
T 1z08_A 151 KQNKGI 156 (170)
T ss_dssp TTTBSH
T ss_pred CCCCCH
Confidence 999985
No 21
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.4e-33 Score=190.14 Aligned_cols=152 Identities=30% Similarity=0.546 Sum_probs=135.0
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
+.+.+||+++|.+|+|||||+++|.++.+...+.++.+..+ .....+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 45789999999999999999999999988877778877666 45677888899999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
++|||++++.++..+ ..|+..+.+.. ++.|+++|+||+|+...+. +..+++..++...++ +++++||
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 150 (170)
T 1r2q_A 83 IVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNSL-LFMETSA 150 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence 999999999999998 78888887765 6899999999999976554 677889999999998 9999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|+||
T Consensus 151 ~~g~gi 156 (170)
T 1r2q_A 151 KTSMNV 156 (170)
T ss_dssp TTCTTH
T ss_pred CCCCCH
Confidence 999985
No 22
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.6e-34 Score=197.87 Aligned_cols=154 Identities=32% Similarity=0.481 Sum_probs=131.8
Q ss_pred CCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcE
Q 030961 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (168)
Q Consensus 3 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (168)
|+..+.+||+++|.+|+|||||+++|.+..+...+.++.+..+.....+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 34457899999999999999999999999998888888888877677778888999999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEe
Q 030961 83 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 160 (168)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (168)
+++|||++++.+++.+ ..|+..+.... .++|+++|+||+|+...+. +..+++..++..+++ +|+++
T Consensus 99 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~ 166 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPERE----------VQAVEGKKLAESWGA-TFMES 166 (201)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence 9999999999999998 78888887764 5789999999999987665 788999999999998 99999
Q ss_pred cccCccCC
Q 030961 161 SSKTQQVC 168 (168)
Q Consensus 161 Sa~~~~~i 168 (168)
||++|.||
T Consensus 167 Sa~~~~~v 174 (201)
T 3oes_A 167 SARENQLT 174 (201)
T ss_dssp CTTCHHHH
T ss_pred eCCCCCCH
Confidence 99999875
No 23
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.5e-34 Score=197.51 Aligned_cols=152 Identities=32% Similarity=0.609 Sum_probs=135.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
.++.+||+++|.+|+|||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 35689999999999999999999999988877788887666 45777889899999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...+. +..++++.++...++ +|+++||
T Consensus 103 i~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 170 (201)
T 2ew1_A 103 ILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSA 170 (201)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-CEEECCT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 88999888765 5789999999999976654 778889999999998 8999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|+||
T Consensus 171 ~~g~gv 176 (201)
T 2ew1_A 171 KESDNV 176 (201)
T ss_dssp TTCTTH
T ss_pred CCCCCH
Confidence 999985
No 24
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=1.7e-33 Score=189.52 Aligned_cols=151 Identities=34% Similarity=0.554 Sum_probs=134.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
++.+||+++|++|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 4689999999999999999999999988888888887666 456778888999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
+|||++++.+++.+ ..|+..+.....+.|+++|+||+|+...+. +..++++.++..+++ +++++||++
T Consensus 83 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 150 (168)
T 1z2a_A 83 LVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL-RFYRTSVKE 150 (168)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEecCC
Confidence 99999999999988 778888877667899999999999987654 678889999999998 999999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
|.||
T Consensus 151 ~~~i 154 (168)
T 1z2a_A 151 DLNV 154 (168)
T ss_dssp TBSS
T ss_pred CCCH
Confidence 9986
No 25
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=3.7e-33 Score=191.83 Aligned_cols=152 Identities=31% Similarity=0.612 Sum_probs=135.6
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
.+..+||+++|.+|+|||||+++|.+..+...+.++.+.++. ..+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 456899999999999999999999999887777788776663 5667788899999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..++++++++.+++ +++++||
T Consensus 99 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 166 (189)
T 2gf9_A 99 LLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERV----------VPAEDGRRLADDLGF-EFFEASA 166 (189)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEEC
Confidence 999999999999998 78998888775 6899999999999976654 678889999999998 9999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|.||
T Consensus 167 ~~g~gi 172 (189)
T 2gf9_A 167 KENINV 172 (189)
T ss_dssp TTTBSH
T ss_pred CCCCCH
Confidence 999985
No 26
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=2.3e-33 Score=194.83 Aligned_cols=164 Identities=48% Similarity=0.881 Sum_probs=141.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
+...+||+++|.+|+|||||+++|.+..+...+.++.+..+...+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 35689999999999999999999999998888888888888777888999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh--cCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
+|||++++.++..+...|...+....++.|+++|+||+|+........ .....+.+..+++..+++..+..+++++||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 181 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeC
Confidence 999999999999986789998888777899999999999986532111 111223477889999999999878999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|+||
T Consensus 182 ~~g~gi 187 (201)
T 2gco_A 182 KTKEGV 187 (201)
T ss_dssp TTCTTH
T ss_pred CCCCCH
Confidence 999985
No 27
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=2e-33 Score=192.21 Aligned_cols=163 Identities=61% Similarity=1.042 Sum_probs=139.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
...+||+++|.+|+|||||+++|.++.+...+.++.+..+.....+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 35799999999999999999999999888888888887777778889999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh--cCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
|||++++.++..+...|+..+....++.|+++|+||+|+........ .....+.+..+++..++..++..+++++||+
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 162 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCC
Confidence 99999999999984489999988777899999999999976532110 0112234778889999999987689999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|+||
T Consensus 163 ~g~gi 167 (186)
T 1mh1_A 163 TQRGL 167 (186)
T ss_dssp TCTTH
T ss_pred CccCH
Confidence 99985
No 28
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.4e-33 Score=191.82 Aligned_cols=152 Identities=29% Similarity=0.592 Sum_probs=135.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
.++.+||+++|.+|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 45789999999999999999999999988877778877666 45677888899999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..+++++++..+++ +++++||
T Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 159 (179)
T 1z0f_A 92 LMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASA 159 (179)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred EEEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999988 78988888766 6899999999999976654 778899999999998 9999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|.||
T Consensus 160 ~~~~gi 165 (179)
T 1z0f_A 160 KTGENV 165 (179)
T ss_dssp TTCTTH
T ss_pred CCCCCH
Confidence 999985
No 29
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=9.5e-34 Score=192.84 Aligned_cols=152 Identities=18% Similarity=0.274 Sum_probs=126.2
Q ss_pred CCCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCc
Q 030961 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (168)
Q Consensus 2 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (168)
||...+.+||+++|++|||||||+++|.++.+.. +.+|.+..+.+.+.+++..+.+.+|||+|++. ..+++++|
T Consensus 1 Sm~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d 74 (178)
T 2iwr_A 1 SMRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD 74 (178)
T ss_dssp CCCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence 3555678999999999999999999999998876 77888877777888899999999999999976 45778899
Q ss_pred EEEEEEeCCChhHHHHHHHhHHHHHchh---C-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEE
Q 030961 82 VFVLAFSLVSRASYENVLKKWIPELQHY---S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 157 (168)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~l~~~---~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (168)
++++|||+++++++..+ ..|+..+... . ++.|+++|+||+|+..... +.+..++++.++...+..+|
T Consensus 75 ~~ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~--------~~v~~~~~~~~~~~~~~~~~ 145 (178)
T 2iwr_A 75 AVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASSP--------RVVGDARARALXADMKRCSY 145 (178)
T ss_dssp EEEEEEETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBC--------CCSCHHHHHHHHHHHSSEEE
T ss_pred EEEEEEECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECcccccccc--------CcCCHHHHHHHHHhhcCCeE
Confidence 99999999999999998 7765555443 2 5789999999999953211 22778889999988754499
Q ss_pred EEecccCccCC
Q 030961 158 IECSSKTQQVC 168 (168)
Q Consensus 158 ~~~Sa~~~~~i 168 (168)
+++||++|+||
T Consensus 146 ~~~Sa~~~~~i 156 (178)
T 2iwr_A 146 YETXATYGLNV 156 (178)
T ss_dssp EEEBTTTTBTH
T ss_pred EEEeccccCCH
Confidence 99999999985
No 30
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.9e-33 Score=193.73 Aligned_cols=152 Identities=29% Similarity=0.579 Sum_probs=132.0
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
..+.+||+++|.+|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 45789999999999999999999999988877778877766 45677888899999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...+. +..++++.++..+++ +++++||
T Consensus 98 i~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 165 (191)
T 2a5j_A 98 LLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSA 165 (191)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 78988887765 6899999999999976554 778889999999998 9999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|+||
T Consensus 166 ~~~~gi 171 (191)
T 2a5j_A 166 KTACNV 171 (191)
T ss_dssp TTCTTH
T ss_pred CCCCCH
Confidence 999985
No 31
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=198.19 Aligned_cols=163 Identities=43% Similarity=0.869 Sum_probs=120.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
.+.+||+++|.+|+|||||+++|.++.+...+.++....+...+.+++..+.+.+|||||++.+..++..+++++|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 45799999999999999999999999888778888877777788889999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh--cCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
|||++++.++..+...|+..+....++.|+++|+||+|+........ .....+.+..+++..+++.+++.+|+++||+
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 191 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence 99999999999985589999988777899999999999987642111 0112234778899999999997789999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|.||
T Consensus 192 ~g~gi 196 (214)
T 2j1l_A 192 LHDNV 196 (214)
T ss_dssp TTBSH
T ss_pred CCCCH
Confidence 99985
No 32
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=6.8e-34 Score=197.60 Aligned_cols=152 Identities=31% Similarity=0.539 Sum_probs=128.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
++.+||+++|.+|+|||||+++|.+..+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 4679999999999999999999999988777788887766 556778888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...+. +..+++++++..+++.+++++||+
T Consensus 107 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA~ 175 (201)
T 2hup_A 107 LAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSELRE----------VSLAEAQSLAEHYDILCAIETSAK 175 (201)
T ss_dssp EEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTCSEEEECBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCccccccc----------cCHHHHHHHHHHcCCCEEEEEeCC
Confidence 99999999999998 78998888776 6899999999999987654 778899999999997689999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|+||
T Consensus 176 ~g~gi 180 (201)
T 2hup_A 176 DSSNV 180 (201)
T ss_dssp TTBSH
T ss_pred CCCCH
Confidence 99985
No 33
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=9e-34 Score=190.69 Aligned_cols=151 Identities=27% Similarity=0.511 Sum_probs=133.8
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
+.+||+++|.+|+|||||+++|.++.+...+.++.+..+.+...+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999998888888888887777778888899999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 87 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+...+. +..+++..+++.++..+++++||++
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (167)
T 1c1y_A 82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWCNCAFLESSAKS 150 (167)
T ss_dssp EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECcccccccc----------CCHHHHHHHHHHccCCcEEEecCCC
Confidence 999999999998 77887776653 5899999999999987654 7788899999988434999999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
|.||
T Consensus 151 ~~gi 154 (167)
T 1c1y_A 151 KINV 154 (167)
T ss_dssp TBSH
T ss_pred CCCH
Confidence 9985
No 34
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-33 Score=194.47 Aligned_cols=152 Identities=29% Similarity=0.535 Sum_probs=135.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
.++.+||+++|.+|+|||||+++|++..+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 46789999999999999999999999988777788887766 44567788889999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
++|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+...+. +..+++++++..+++ +++++||
T Consensus 100 ilV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 167 (192)
T 2fg5_A 100 VIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE----------VPLKDAKEYAESIGA-IVVETSA 167 (192)
T ss_dssp EEEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTTTC-EEEECBT
T ss_pred EEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 88999888776 5799999999999976544 778899999999997 9999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|.||
T Consensus 168 ~~~~gi 173 (192)
T 2fg5_A 168 KNAINI 173 (192)
T ss_dssp TTTBSH
T ss_pred CCCcCH
Confidence 999985
No 35
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=4.6e-33 Score=187.73 Aligned_cols=152 Identities=26% Similarity=0.536 Sum_probs=135.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
..+.+||+++|.+|+|||||+++|.+..+...+.++.+..+ .....+++....+.+|||||.+.+..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35689999999999999999999999998877788887766 45677888899999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
++|||++++.++..+ ..|+..+.... +..|+++|+||+|+...+. +..+++..++...+. +++++||
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 150 (170)
T 1z0j_A 83 IIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSA 150 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 88998888775 6899999999999987654 778889999999997 9999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|.||
T Consensus 151 ~~~~~i 156 (170)
T 1z0j_A 151 KNAINI 156 (170)
T ss_dssp TTTBSH
T ss_pred CCCcCH
Confidence 999985
No 36
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-33 Score=197.57 Aligned_cols=152 Identities=30% Similarity=0.510 Sum_probs=127.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
.+..+||+++|++|+|||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 356899999999999999999999999988888888887774 5677888889999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
++|||++++.++..+ ..|+..+.... .+.|++||+||+|+...+. +..+++..++..+++ +|+++||
T Consensus 90 ilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 157 (223)
T 3cpj_B 90 LIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHLRA----------VPTEESKTFAQENQL-LFTETSA 157 (223)
T ss_dssp EEEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCC
T ss_pred EEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 78998887765 5799999999999987654 778889999999997 9999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|+||
T Consensus 158 ~~~~gi 163 (223)
T 3cpj_B 158 LNSENV 163 (223)
T ss_dssp C-CCCH
T ss_pred CCCCCH
Confidence 999985
No 37
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=4.6e-33 Score=193.29 Aligned_cols=152 Identities=29% Similarity=0.600 Sum_probs=136.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
.+..+||+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 45789999999999999999999999998777778877666 45677788899999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..++++.++..+++ +++++||
T Consensus 85 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 152 (203)
T 1zbd_A 85 ILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------VSSERGRQLADHLGF-EFFEASA 152 (203)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSCC----------SCHHHHHHHHHHHTC-EEEECBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHCCC-eEEEEEC
Confidence 999999999999998 78998888766 6799999999999977654 778899999999998 9999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|.||
T Consensus 153 ~~~~gi 158 (203)
T 1zbd_A 153 KDNINV 158 (203)
T ss_dssp TTTBSS
T ss_pred CCCCCH
Confidence 999986
No 38
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=3.8e-33 Score=188.03 Aligned_cols=153 Identities=31% Similarity=0.561 Sum_probs=133.9
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
+.+||+++|++|+|||||+++|.+..+...+.++.+..+ .....+++..+.+.+||+||++.+..++..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 468999999999999999999999988877788887766 4567788899999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
|||++++.++..+ ..|+..+.... .+.|+++++||+|+..... ...+..++++.++...++ +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 152 (170)
T 1ek0_A 82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQEGG-------ERKVAREEGEKLAEEKGL-LFFETSAKT 152 (170)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSSC-------CCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred EEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc-------ccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999998 78888887765 6899999999999976521 123778889999999998 999999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
|.||
T Consensus 153 ~~gi 156 (170)
T 1ek0_A 153 GENV 156 (170)
T ss_dssp CTTH
T ss_pred CCCH
Confidence 9985
No 39
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=3.6e-33 Score=191.50 Aligned_cols=149 Identities=21% Similarity=0.327 Sum_probs=128.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
..+.+||+++|++|||||||+++|+++.+...+.++. ..+.+.+.+++..+.+.+|||+|++.+. +++++|+++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 4578999999999999999999999999888777774 4556788899999999999999998876 778899999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
+|||++++.+++.+ ..|+..+.... .+.|+++++||+|+..... +.+..+++..++..++..+|+++||
T Consensus 91 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------~~v~~~~~~~~~~~~~~~~~~e~Sa 161 (184)
T 3ihw_A 91 FVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISAANP--------RVIDDSRARKLSTDLKRCTYYETCA 161 (184)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCBTTBC--------CCSCHHHHHHHHHHTTTCEEEEEBT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc--------cccCHHHHHHHHHHcCCCeEEEecC
Confidence 99999999999998 78999988765 5799999999999953211 2278899999999998449999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|+||
T Consensus 162 ~~~~gv 167 (184)
T 3ihw_A 162 TYGLNV 167 (184)
T ss_dssp TTTBTH
T ss_pred CCCCCH
Confidence 999985
No 40
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=2.2e-33 Score=188.74 Aligned_cols=150 Identities=31% Similarity=0.554 Sum_probs=132.3
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
+.+||+++|.+|+|||||+++|.+..+...+.++.+..+...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 47899999999999999999999998888888888877777778899999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 87 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
||+++++++..+ ..|+..+.+.. .+.|+++|+||+|+...+. +..+++..++..+++ +++++||++
T Consensus 83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 150 (168)
T 1u8z_A 83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQWNV-NYVETSAKT 150 (168)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCCC
Confidence 999999999998 78888887765 3799999999999987654 778899999999998 899999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
|.||
T Consensus 151 ~~gi 154 (168)
T 1u8z_A 151 RANV 154 (168)
T ss_dssp CTTH
T ss_pred CCCH
Confidence 9985
No 41
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.7e-33 Score=193.29 Aligned_cols=163 Identities=48% Similarity=0.863 Sum_probs=133.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
...+||+++|.+|+|||||+++|.+..+...+.++.+..+...+.+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 46789999999999999999999999888877888887776677888999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh--cCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
|||++++.++..+...|+..+....++.|+++|+||+|+........ .....+.+..+++..++...+..+++++||+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 182 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCC
Confidence 99999999999886789998888777899999999999976532111 0111234678889999999988789999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|+||
T Consensus 183 ~g~gi 187 (207)
T 2fv8_A 183 TKEGV 187 (207)
T ss_dssp TCTTH
T ss_pred CCCCH
Confidence 99985
No 42
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=3.2e-33 Score=188.08 Aligned_cols=148 Identities=20% Similarity=0.326 Sum_probs=110.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
.+||+++|++|+|||||+++|.+.... ...++.+..+.....+++..+.+.+||++|++.+..++..+++.++++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 589999999999999999999876653 3345555666677788999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
|++++.+++.+ ..|+..+.+.. ++.|+++|+||+|+...+. +..+++..++...++ +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (166)
T 3q72_A 81 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVVFDC-KFIETSAALH 148 (166)
T ss_dssp ETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSCC----------SCHHHHHHHHHHTTC-EEEECBGGGT
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccccccccc----------cCHHHHHHHHHHhCC-cEEEeccCCC
Confidence 99999999998 77888777653 6899999999999987665 888999999999998 9999999999
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
+||
T Consensus 149 ~gi 151 (166)
T 3q72_A 149 HNV 151 (166)
T ss_dssp BSH
T ss_pred CCH
Confidence 985
No 43
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=2.8e-33 Score=194.89 Aligned_cols=164 Identities=61% Similarity=1.046 Sum_probs=139.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
..+.+||+++|.+|+|||||+++|.++.+...+.++....+...+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 35689999999999999999999999998888888888777778888999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh--cCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
+|||++++.++..+...|+..+....++.|+++|+||+|+........ .......+..+++..++..++..+++++||
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 186 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeC
Confidence 999999999999985589999998877899999999999986543111 112233467889999999999878999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|+||
T Consensus 187 ~~g~gi 192 (204)
T 4gzl_A 187 LTQRGL 192 (204)
T ss_dssp TTCTTH
T ss_pred CCCCCH
Confidence 999985
No 44
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9e-33 Score=188.11 Aligned_cols=152 Identities=33% Similarity=0.628 Sum_probs=126.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCcE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (168)
.++.+||+++|.+|+|||||+++|.+..+. ..+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 467899999999999999999999998874 456677776664 455788889999999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
+++|+|++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..++++.++..+++ +++++|
T Consensus 87 ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 154 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL-PFMETS 154 (180)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------SCHHHHHHHHHHHTC-CEEECC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEe
Confidence 9999999999999988 78988888766 6899999999999987654 778889999999998 899999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|++|.||
T Consensus 155 a~~~~gi 161 (180)
T 2g6b_A 155 AKTGLNV 161 (180)
T ss_dssp TTTCTTH
T ss_pred CCCCCCH
Confidence 9999985
No 45
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-33 Score=194.06 Aligned_cols=153 Identities=29% Similarity=0.476 Sum_probs=133.8
Q ss_pred CCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcE
Q 030961 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (168)
Q Consensus 3 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (168)
+...+.+||+++|.+|+|||||+++|.+..+...+.++.+..+...+.+++..+.+.+||+||++. ..++..+++.+|+
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 445678999999999999999999999999888888888888877788899999999999999988 7778888999999
Q ss_pred EEEEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEe
Q 030961 83 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 160 (168)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (168)
+++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...+. +..+++..++..+++ +++++
T Consensus 102 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~ 169 (196)
T 2atv_A 102 FVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATELAC-AFYEC 169 (196)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-EEEEC
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence 9999999999999998 78888877653 5899999999999987654 778899999999998 99999
Q ss_pred cccCcc-CC
Q 030961 161 SSKTQQ-VC 168 (168)
Q Consensus 161 Sa~~~~-~i 168 (168)
||++|. ||
T Consensus 170 Sa~~g~~gi 178 (196)
T 2atv_A 170 SACTGEGNI 178 (196)
T ss_dssp CTTTCTTCH
T ss_pred CCCcCCcCH
Confidence 999998 75
No 46
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=2.8e-33 Score=190.76 Aligned_cols=158 Identities=32% Similarity=0.567 Sum_probs=116.7
Q ss_pred CCCCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEEC-CeEEEEEEEeCCCCcccccccccccc
Q 030961 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYR 78 (168)
Q Consensus 1 m~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~ 78 (168)
|+....+.+||+++|++|+|||||+++|++..+...+.++.+.++ ...+.++ +..+.+.+||+||++.+..++..+++
T Consensus 1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (182)
T 1ky3_A 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR 80 (182)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence 776778899999999999999999999999988877788876665 4456666 56788999999999999999999999
Q ss_pred CCcEEEEEEeCCChhHHHHHHHhHHHHHchhC-----CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhC
Q 030961 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (168)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (168)
.+|++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+..... .+..+++..++...+
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---------~v~~~~~~~~~~~~~ 150 (182)
T 1ky3_A 81 GADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQELAKSLG 150 (182)
T ss_dssp TCCEEEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---------CSCHHHHHHHHHHTT
T ss_pred cCCEEEEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCccccccc---------cCCHHHHHHHHHhcC
Confidence 99999999999999999998 78888776643 5789999999999954321 266788888888544
Q ss_pred CcEEEEecccCccCC
Q 030961 154 ASYYIECSSKTQQVC 168 (168)
Q Consensus 154 ~~~~~~~Sa~~~~~i 168 (168)
..+++++||++|+||
T Consensus 151 ~~~~~~~Sa~~~~gi 165 (182)
T 1ky3_A 151 DIPLFLTSAKNAINV 165 (182)
T ss_dssp SCCEEEEBTTTTBSH
T ss_pred CCeEEEEecCCCCCH
Confidence 448999999999985
No 47
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=2.3e-33 Score=188.50 Aligned_cols=150 Identities=29% Similarity=0.574 Sum_probs=133.3
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
+.+||+++|++|+|||||+++|.++.+...+.++.+..+.....+++..+.+.+||+||++.+..++..+++.++++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 36899999999999999999999998888888888777777788899999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 87 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
||++++.++..+ ..|...+.+.. .+.|+++|+||+|+...+. +..+++..++..+++ +++++||++
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (167)
T 1kao_A 82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEEWGC-PFMETSAKS 149 (167)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-CEEEECTTC
T ss_pred EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCccccccc----------CCHHHHHHHHHHhCC-CEEEecCCC
Confidence 999999999988 77777776654 5799999999999976654 778889999999998 899999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
|+||
T Consensus 150 ~~gi 153 (167)
T 1kao_A 150 KTMV 153 (167)
T ss_dssp HHHH
T ss_pred CcCH
Confidence 9875
No 48
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=4.6e-33 Score=193.41 Aligned_cols=152 Identities=30% Similarity=0.547 Sum_probs=137.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
..+.++|+++|.+|+|||||+++|.+..+...+.++.+..+...+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 34678999999999999999999999988888888888877777888999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..+++..++..+++ +++++||
T Consensus 91 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 158 (206)
T 2bov_A 91 CVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSA 158 (206)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCcccccc----------ccHHHHHHHHHHhCC-eEEEEeC
Confidence 99999999999998 78888888765 3899999999999987654 778899999999998 8999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|+||
T Consensus 159 ~~g~gi 164 (206)
T 2bov_A 159 KTRANV 164 (206)
T ss_dssp TTCTTH
T ss_pred CCCCCH
Confidence 999985
No 49
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=6.2e-33 Score=188.02 Aligned_cols=151 Identities=23% Similarity=0.332 Sum_probs=118.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCcc--ccccccccccCCcEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED--YNRLRPLSYRGADVF 83 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~~~~ 83 (168)
.+.+||+++|++|+|||||+++|.+..+...+.+...+.+...+.+++..+.+.+|||||++. +..+...+++.++++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 357999999999999999999999988755433332333456778889999999999999987 566677788899999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
++|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+...+. +..++++.++..+++ +++++|
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S 149 (175)
T 2nzj_A 82 VIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCRE----------VSVEEGRACAVVFDC-KFIETS 149 (175)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHHTS-EEEECB
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhccccc----------cCHHHHHHHHHHcCC-eEEEEe
Confidence 999999999999998 78888887753 5799999999999987654 777888899999998 999999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|++|+||
T Consensus 150 a~~g~gi 156 (175)
T 2nzj_A 150 ATLQHNV 156 (175)
T ss_dssp TTTTBSH
T ss_pred cCCCCCH
Confidence 9999985
No 50
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=4.2e-33 Score=190.63 Aligned_cols=152 Identities=30% Similarity=0.547 Sum_probs=135.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
..+.+||+++|.+|+|||||+++|.+..+...+.++.+..+...+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 34679999999999999999999999988888888888777777888999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
+|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+...+. +..++++.++..+++ +++++||
T Consensus 95 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 162 (187)
T 2a9k_A 95 CVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSA 162 (187)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCC
Confidence 99999999999998 78888887765 3799999999999977654 778889999999998 9999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|.||
T Consensus 163 ~~~~gi 168 (187)
T 2a9k_A 163 KTRANV 168 (187)
T ss_dssp TTCTTH
T ss_pred CCCCCH
Confidence 999985
No 51
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.2e-33 Score=190.37 Aligned_cols=152 Identities=31% Similarity=0.505 Sum_probs=134.6
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
.++.+||+++|.+|+|||||+++|.+..+...+.++.+..+ .....+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 45689999999999999999999999988877778877666 45677788899999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..++++.++...++ +++++||
T Consensus 102 i~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 169 (193)
T 2oil_A 102 LLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQARE----------VPTEEARMFAENNGL-LFLETSA 169 (193)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999988 78888887765 5799999999999986654 678889999999998 9999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|.||
T Consensus 170 ~~~~gi 175 (193)
T 2oil_A 170 LDSTNV 175 (193)
T ss_dssp TTCTTH
T ss_pred CCCCCH
Confidence 999985
No 52
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=5.6e-33 Score=188.74 Aligned_cols=151 Identities=33% Similarity=0.556 Sum_probs=134.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
.+.+||+++|.+|+|||||+++|++..+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999999988877788877665 556778898999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..+++..++...++ +++++||+
T Consensus 92 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 159 (179)
T 2y8e_A 92 VVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-MFIETSAK 159 (179)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccCc----------CCHHHHHHHHHHcCC-eEEEEeCC
Confidence 99999999999988 78888877654 5799999999999986654 778889999999998 99999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|+||
T Consensus 160 ~~~~i 164 (179)
T 2y8e_A 160 AGYNV 164 (179)
T ss_dssp TTBSH
T ss_pred CCCCH
Confidence 99985
No 53
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=189.95 Aligned_cols=154 Identities=28% Similarity=0.576 Sum_probs=135.1
Q ss_pred CCCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCC
Q 030961 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80 (168)
Q Consensus 2 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (168)
.....+.+||+++|.+|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++.+
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (195)
T 1x3s_A 9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGA 88 (195)
T ss_dssp CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTC
T ss_pred ccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 33445789999999999999999999999998888888887666 45677888999999999999999999999999999
Q ss_pred cEEEEEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 81 DVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
|++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+... . +..+++..++...++ +++
T Consensus 89 d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~-~~~ 155 (195)
T 1x3s_A 89 QGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENR-E----------VDRNEGLKFARKHSM-LFI 155 (195)
T ss_dssp CEEEEEEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSC-C----------SCHHHHHHHHHHTTC-EEE
T ss_pred CEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCccc-c----------cCHHHHHHHHHHcCC-EEE
Confidence 999999999999999998 78988888765 57899999999999533 2 677889999999998 899
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|+||
T Consensus 156 ~~Sa~~~~gi 165 (195)
T 1x3s_A 156 EASAKTCDGV 165 (195)
T ss_dssp ECCTTTCTTH
T ss_pred EecCCCCCCH
Confidence 9999999985
No 54
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=3.6e-33 Score=188.26 Aligned_cols=149 Identities=33% Similarity=0.648 Sum_probs=126.3
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
..+||+++|++|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 478999999999999999999999988777788887766 4567778888999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
|||++++.++..+ ..|+..+.+.. ++.|+++|+||+|+.. +. +..+++..+++.+++ +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (170)
T 1g16_A 82 VYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMET-RV----------VTADQGEALAKELGI-PFIESSAKN 148 (170)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTT-CC----------SCHHHHHHHHHHHTC-CEEECBTTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCCc-Cc----------cCHHHHHHHHHHcCC-eEEEEECCC
Confidence 9999999999988 78988888766 5899999999999943 22 677889999999998 899999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
|.||
T Consensus 149 ~~gv 152 (170)
T 1g16_A 149 DDNV 152 (170)
T ss_dssp TBSH
T ss_pred CCCH
Confidence 9985
No 55
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-34 Score=198.53 Aligned_cols=153 Identities=33% Similarity=0.611 Sum_probs=137.0
Q ss_pred CcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcE
Q 030961 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (168)
Q Consensus 4 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (168)
..+..+||+++|.+|+|||||+++|.+..+...+.++.+.++ ...+..++..+.+.+||+||++.+..++..+++.+|+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 346789999999999999999999999988877778877666 4567778888999999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
+++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...+. +..++++.++..+++ +++++|
T Consensus 99 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 166 (191)
T 3dz8_A 99 FILMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEERV----------VPTEKGQLLAEQLGF-DFFEAS 166 (191)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECB
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEE
Confidence 9999999999999998 78999998876 6899999999999977655 788899999999998 999999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|++|.||
T Consensus 167 a~~~~gi 173 (191)
T 3dz8_A 167 AKENISV 173 (191)
T ss_dssp TTTTBSH
T ss_pred CCCCCCH
Confidence 9999985
No 56
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.6e-33 Score=193.72 Aligned_cols=151 Identities=30% Similarity=0.553 Sum_probs=124.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
++.+||+++|.+|+|||||+++|++..+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 5689999999999999999999999988877788887666 456778888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..+++..++...++ +++++||+
T Consensus 103 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~SA~ 170 (200)
T 2o52_A 103 LVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSAL 170 (200)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999998 78888887765 6899999999999976554 777889999999998 99999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|+||
T Consensus 171 ~g~gi 175 (200)
T 2o52_A 171 TGENV 175 (200)
T ss_dssp TCTTH
T ss_pred CCCCH
Confidence 99985
No 57
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1.7e-33 Score=191.46 Aligned_cols=152 Identities=28% Similarity=0.451 Sum_probs=130.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECC-eEEEEEEEeCCCCccccccccccccCCcE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEG-TTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (168)
..+.+||+++|++|+|||||+++|.+..+...+.++.+.++ ...+.+++ ..+.+.+|||||++.+..++..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45689999999999999999999999887766667776554 55667776 67899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHhHHHHHchhC---CCCc-EEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 83 FVLAFSLVSRASYENVLKKWIPELQHYS---PGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
+++|||++++.+++.+ ..|+..+.... .+.| +++|+||+|+...+. +..+++..++..+++ +++
T Consensus 83 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~ 150 (178)
T 2hxs_A 83 VLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT----------IKPEKHLRFCQENGF-SSH 150 (178)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEE
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHcCC-cEE
Confidence 9999999999999987 78888887753 2455 899999999987654 778889999999998 999
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|+||
T Consensus 151 ~~Sa~~~~gi 160 (178)
T 2hxs_A 151 FVSAKTGDSV 160 (178)
T ss_dssp EECTTTCTTH
T ss_pred EEeCCCCCCH
Confidence 9999999985
No 58
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.2e-32 Score=188.80 Aligned_cols=150 Identities=35% Similarity=0.560 Sum_probs=132.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
.+.+||+++|++|+|||||+++|.+..+...+.++....+.....+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46899999999999999999999999888888888877777788889999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.... +..+++..++..+++ +++++||+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~ 148 (189)
T 4dsu_A 82 VFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-----------VDTKQAQDLARSYGI-PFIETSAK 148 (189)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCcccc-----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence 9999999999998 78888887754 579999999999997432 678889999999998 89999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|.||
T Consensus 149 ~g~gi 153 (189)
T 4dsu_A 149 TRQGV 153 (189)
T ss_dssp TCTTH
T ss_pred CCCCH
Confidence 99985
No 59
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=9.3e-33 Score=192.11 Aligned_cols=155 Identities=30% Similarity=0.551 Sum_probs=129.1
Q ss_pred CCCCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccC
Q 030961 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (168)
Q Consensus 1 m~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 79 (168)
|+....+.+||+++|.+|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (207)
T 1vg8_A 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80 (207)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence 666778899999999999999999999999988877788876665 4567778888999999999999999999999999
Q ss_pred CcEEEEEEeCCChhHHHHHHHhHHHHHchhC-----CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH-HhC
Q 030961 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-QIG 153 (168)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 153 (168)
+|++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+... . +..+++..++. ..+
T Consensus 81 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~ 148 (207)
T 1vg8_A 81 ADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-Q----------VATKRAQAWCYSKNN 148 (207)
T ss_dssp CSEEEEEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-C----------SCHHHHHHHHHHTTS
T ss_pred CcEEEEEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCccc-c----------cCHHHHHHHHHhcCC
Confidence 9999999999999999988 78888776543 47899999999999732 2 56788888887 455
Q ss_pred CcEEEEecccCccCC
Q 030961 154 ASYYIECSSKTQQVC 168 (168)
Q Consensus 154 ~~~~~~~Sa~~~~~i 168 (168)
. +++++||++|.||
T Consensus 149 ~-~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 149 I-PYFETSAKEAINV 162 (207)
T ss_dssp C-CEEECBTTTTBSH
T ss_pred c-eEEEEeCCCCCCH
Confidence 5 8999999999985
No 60
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=8.8e-33 Score=186.41 Aligned_cols=149 Identities=23% Similarity=0.364 Sum_probs=116.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeec-eeEEEEECCeEEEEEEEeCCCCccccc-cccccccCCcEEEE
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVVAEGTTVNLGLWDTAGQEDYNR-LRPLSYRGADVFVL 85 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~ 85 (168)
.+||+++|++|+|||||+++|.+..+...+.++.+.. +...+.+++..+.+.+||++|++.+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 5899999999999999999999876655444444434 356777899999999999999998876 77777899999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhCC--CCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~~--~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
|||+++++++..+ ..|+..+....+ +.|+++|+||+|+...+. +..+++..++..+++ +++++||+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (169)
T 3q85_A 82 VFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETSAA 149 (169)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred EEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhccc----------CCHHHHHHHHHHcCC-cEEEecCc
Confidence 9999999999998 788888877653 899999999999986655 888999999999998 99999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|+||
T Consensus 150 ~~~~v 154 (169)
T 3q85_A 150 LHHNT 154 (169)
T ss_dssp TTBSH
T ss_pred cCCCH
Confidence 99985
No 61
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1e-32 Score=193.00 Aligned_cols=152 Identities=20% Similarity=0.372 Sum_probs=123.4
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCcc-ccccccccccCCc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRPLSYRGAD 81 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~ 81 (168)
....+||+++|.+|||||||+++|.+.. +...+.++..+.+.+.+.+++..+.+.+|||+|++. +..+.+.+++.++
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 3567999999999999999999999643 344433332333466778899999999999999876 4556677888999
Q ss_pred EEEEEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEE
Q 030961 82 VFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (168)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (168)
++++|||++++.+|+.+ ..|...+.+.. .++|+++|+||+|+...+. +..++++.++..+++ +|++
T Consensus 114 ~~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~----------v~~~e~~~~a~~~~~-~~~e 181 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE----------VSVSEGRACAVVFDC-KFIE 181 (211)
T ss_dssp EEEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEE
T ss_pred EEEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcCce----------EeHHHHHHHHHHcCC-EEEE
Confidence 99999999999999998 77887776542 5799999999999976554 777888899999998 8999
Q ss_pred ecccCccCC
Q 030961 160 CSSKTQQVC 168 (168)
Q Consensus 160 ~Sa~~~~~i 168 (168)
+||++|+||
T Consensus 182 ~SAk~g~~v 190 (211)
T 2g3y_A 182 TSAAVQHNV 190 (211)
T ss_dssp CBTTTTBSH
T ss_pred EeCCCCCCH
Confidence 999999985
No 62
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.3e-33 Score=192.77 Aligned_cols=153 Identities=29% Similarity=0.555 Sum_probs=127.3
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
....+||+++|.+|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45789999999999999999999999888777777776665 45677888899999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...+. +..++++.++..++..+++++||
T Consensus 103 ilV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA 171 (192)
T 2il1_A 103 ILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASA 171 (192)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTSTTCEEEECBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCCeEEEEeC
Confidence 999999999999998 78988888776 5799999999999977654 77888899998863349999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|+||
T Consensus 172 ~~g~gi 177 (192)
T 2il1_A 172 KDNFNV 177 (192)
T ss_dssp TTTBSH
T ss_pred CCCCCH
Confidence 999985
No 63
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=193.37 Aligned_cols=158 Identities=30% Similarity=0.518 Sum_probs=124.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
..+.+||+++|.+|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 45689999999999999999999999988777778887666 45778899999999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+..... ....+.+..++++.++..+++ +++++||
T Consensus 105 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----~~~~~~v~~~~~~~~~~~~~~-~~~~~SA 178 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDTAA----TEGQKCVPGHFGEKLAMTYGA-LFCETSA 178 (199)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGHHHHH----HTTCCCCCHHHHHHHHHHHTC-EEEECCT
T ss_pred EEEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----cccccccCHHHHHHHHHHcCC-eEEEeeC
Confidence 999999999999998 78988887765 5799999999999974311 011233678889999999998 9999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|.||
T Consensus 179 ~~g~gv 184 (199)
T 2p5s_A 179 KDGSNI 184 (199)
T ss_dssp TTCTTH
T ss_pred CCCCCH
Confidence 999985
No 64
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=1e-32 Score=189.77 Aligned_cols=156 Identities=35% Similarity=0.555 Sum_probs=133.8
Q ss_pred CCC-CcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee--EEEEECCe---------EEEEEEEeCCCCcc
Q 030961 1 MAS-SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS--ANVVAEGT---------TVNLGLWDTAGQED 68 (168)
Q Consensus 1 m~~-~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~i~D~~g~~~ 68 (168)
|+. ..++.+||+++|.+|+|||||+++|.+..+...+.++.+.++. +....++. .+.+.+|||||++.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 442 4567899999999999999999999999887777788776664 34555555 78999999999999
Q ss_pred ccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHH
Q 030961 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE 146 (168)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
+..++..+++.+|++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..++++
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~ 151 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRA----------VKEEEAR 151 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC----------SCHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHH
Confidence 999999999999999999999999999998 78888887765 5899999999999977554 7788899
Q ss_pred HHHHHhCCcEEEEecccCccCC
Q 030961 147 ELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 147 ~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
.++..+++ +++++||++|.||
T Consensus 152 ~~~~~~~~-~~~~~Sa~~~~~v 172 (195)
T 3bc1_A 152 ELAEKYGI-PYFETSAANGTNI 172 (195)
T ss_dssp HHHHHHTC-CEEECCTTTCTTH
T ss_pred HHHHHcCC-CEEEEECCCCCCH
Confidence 99999998 8999999999985
No 65
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=193.29 Aligned_cols=152 Identities=24% Similarity=0.371 Sum_probs=126.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeec-eeEEEEECCeEEEEEEEeCCCCccccc-cccccccCCcE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVVAEGTTVNLGLWDTAGQEDYNR-LRPLSYRGADV 82 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~ 82 (168)
....+||+++|++|||||||+++|.+........++.+.+ +.+.+.+++..+.+.+|||+|++.+.. ++..+++.+++
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 4568999999999999999999997654433333444433 355677899999999999999988764 77778899999
Q ss_pred EEEEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEe
Q 030961 83 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 160 (168)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (168)
+++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..++++.++..+++ +|+++
T Consensus 100 ~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~ 167 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIET 167 (195)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEE
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhccccCC----------cCHHHHHHHHHHhCC-EEEEE
Confidence 9999999999999998 78888887765 4799999999999986654 778899999999997 89999
Q ss_pred cccCccCC
Q 030961 161 SSKTQQVC 168 (168)
Q Consensus 161 Sa~~~~~i 168 (168)
||++|.||
T Consensus 168 Sa~~~~~v 175 (195)
T 3cbq_A 168 SAALHHNT 175 (195)
T ss_dssp BTTTTBSH
T ss_pred cCCCCCCH
Confidence 99999985
No 66
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1e-32 Score=189.60 Aligned_cols=151 Identities=30% Similarity=0.544 Sum_probs=133.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCcccc-ccccccccCCcEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN-RLRPLSYRGADVF 83 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~ 83 (168)
.+.+||+++|.+|+|||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+|||||++.+. .++..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 4679999999999999999999999988887788887766 4567788889999999999999988 7888899999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
++|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+...+. +..++++.++..+++ +++++|
T Consensus 98 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S 165 (189)
T 1z06_A 98 VFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKFADTHSM-PLFETS 165 (189)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEECC
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------eCHHHHHHHHHHcCC-EEEEEe
Confidence 999999999999998 78888887764 6799999999999976654 778889999999998 899999
Q ss_pred ccCc---cCC
Q 030961 162 SKTQ---QVC 168 (168)
Q Consensus 162 a~~~---~~i 168 (168)
|++| +||
T Consensus 166 a~~~~~~~~i 175 (189)
T 1z06_A 166 AKNPNDNDHV 175 (189)
T ss_dssp SSSGGGGSCH
T ss_pred CCcCCcccCH
Confidence 9999 664
No 67
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.8e-33 Score=186.82 Aligned_cols=150 Identities=25% Similarity=0.478 Sum_probs=131.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
..+||+++|.+|+|||||+++|.++.+...+.++.+..+......++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 46899999999999999999999988877777887777766777888889999999999999998888999999999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhC---CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 87 FSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
||++++.+++.+ ..|+..+.+.. ++.|+++|+||+|+...+. +..+++..++..+++ +++++||+
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 149 (172)
T 2erx_A 82 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC-AFMETSAK 149 (172)
T ss_dssp EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEecCC
Confidence 999999999887 67777776643 5799999999999987654 677888899999998 89999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|.||
T Consensus 150 ~~~gi 154 (172)
T 2erx_A 150 LNHNV 154 (172)
T ss_dssp TTBSH
T ss_pred CCcCH
Confidence 99985
No 68
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=2.6e-32 Score=185.36 Aligned_cols=152 Identities=34% Similarity=0.628 Sum_probs=128.3
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
..+.+||+++|++|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 46789999999999999999999999988877788887666 55777889899999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-----CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.. +. +..+++..++......+++
T Consensus 84 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~----------~~~~~~~~~~~~~~~~~~~ 151 (177)
T 1wms_A 84 LLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQ----------VSTEEAQAWCRDNGDYPYF 151 (177)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CS----------SCHHHHHHHHHHTTCCCEE
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCcccc-cc----------cCHHHHHHHHHhcCCceEE
Confidence 999999999999988 78888876643 5789999999999973 22 6778889998844444899
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|+||
T Consensus 152 ~~Sa~~~~gi 161 (177)
T 1wms_A 152 ETSAKDATNV 161 (177)
T ss_dssp ECCTTTCTTH
T ss_pred EEeCCCCCCH
Confidence 9999999985
No 69
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=3.5e-32 Score=188.41 Aligned_cols=152 Identities=26% Similarity=0.465 Sum_probs=129.3
Q ss_pred CCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeE--------------------------
Q 030961 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTT-------------------------- 55 (168)
Q Consensus 3 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------------------- 55 (168)
|.+++.+||+++|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 4566789999999999999999999999988877778877665 3345555544
Q ss_pred -----------EEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcc
Q 030961 56 -----------VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 124 (168)
Q Consensus 56 -----------~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~ 124 (168)
+.+.+|||||++.+..++..+++.+|++++|||++++.++..+ ..|+..+..... .|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~-~piilv~NK~D- 158 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISSN-YIIILVANKID- 158 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSC-CEEEEEEECTT-
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhCC-CcEEEEEECCC-
Confidence 8899999999999999999999999999999999999999997 788888877654 99999999999
Q ss_pred cccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCccCC
Q 030961 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
...+. +..+++++++..+++ +++++||++|.||
T Consensus 159 ~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 191 (208)
T 3clv_A 159 KNKFQ----------VDILEVQKYAQDNNL-LFIQTSAKTGTNI 191 (208)
T ss_dssp CC-CC----------SCHHHHHHHHHHTTC-EEEEECTTTCTTH
T ss_pred ccccc----------CCHHHHHHHHHHcCC-cEEEEecCCCCCH
Confidence 33333 678899999999998 9999999999985
No 70
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=7.8e-32 Score=185.22 Aligned_cols=151 Identities=36% Similarity=0.548 Sum_probs=123.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
..+.+||+++|.+|+|||||+++|.+..+...+.++.+..+...+.+++..+.+.+||+||++.+..++..+++.+++++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 34679999999999999999999999888777778877777777888899999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+... . +..+++++++..+++ +++++||
T Consensus 98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~-~~~~~Sa 164 (190)
T 3con_A 98 CVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPTR-T----------VDTKQAHELAKSYGI-PFIETSA 164 (190)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCC-C----------SCHHHHHHHHHHHTC-CEEECCT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCcc-c----------CCHHHHHHHHHHcCC-eEEEEeC
Confidence 99999999999998 78888887764 47999999999999763 2 667889999999998 8999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|+|+
T Consensus 165 ~~~~gi 170 (190)
T 3con_A 165 KTRQGV 170 (190)
T ss_dssp TTCTTH
T ss_pred CCCCCH
Confidence 999985
No 71
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=6.5e-32 Score=188.60 Aligned_cols=150 Identities=33% Similarity=0.645 Sum_probs=131.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
...++|+++|.+|+|||||+++|++..+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 4579999999999999999999999988777788887776 456778888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+. .+. +..+++..++..+++ +++++||+
T Consensus 98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 164 (213)
T 3cph_A 98 LVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME-TRV----------VTADQGEALAKELGI-PFIESSAK 164 (213)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCS-SCC----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCc-ccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999988 78888887765 479999999999994 333 677888999999998 89999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|+||
T Consensus 165 ~~~gi 169 (213)
T 3cph_A 165 NDDNV 169 (213)
T ss_dssp TTBSS
T ss_pred CCCCH
Confidence 99986
No 72
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1e-32 Score=191.84 Aligned_cols=151 Identities=28% Similarity=0.376 Sum_probs=97.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCceeece-eEEEEECCe--EEEEEEEeCCCCccccccccccccCC
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNF-SANVVAEGT--TVNLGLWDTAGQEDYNRLRPLSYRGA 80 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (168)
...+||+++|.+|+|||||+++|.+. .+...+.+|.+.++ ...+.+++. .+.+.+|||||++.+..++..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46789999999999999999999998 77777778877444 567777777 89999999999999999999999999
Q ss_pred cEEEEEEeCCChhHHHHHHHhHHHHHchhCC----CCcEEEEeeCCcccc-cchhhhcCCCCCcccHHHHHHHHHHhCCc
Q 030961 81 DVFVLAFSLVSRASYENVLKKWIPELQHYSP----GVPVVLVGTKLDLRE-DKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (168)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~----~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (168)
|++++|||++++.++..+ ..|+..+..... +.|+++|+||+|+.. .+. +..+++..++..+++
T Consensus 98 d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~----------v~~~~~~~~~~~~~~- 165 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ----------VRLDMAQDWATTNTL- 165 (208)
T ss_dssp CEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC-------C----------CCHHHHHHHHHHTTC-
T ss_pred cEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccchhhcc----------CCHHHHHHHHHHcCC-
Confidence 999999999999999998 789998887654 789999999999987 544 778899999999997
Q ss_pred EEEEecccC-ccCC
Q 030961 156 YYIECSSKT-QQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~-~~~i 168 (168)
+++++||++ |.||
T Consensus 166 ~~~~~Sa~~~~~gi 179 (208)
T 2yc2_C 166 DFFDVSANPPGKDA 179 (208)
T ss_dssp EEEECCC-------
T ss_pred EEEEeccCCCCcCH
Confidence 999999999 9886
No 73
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1.3e-32 Score=192.92 Aligned_cols=152 Identities=39% Similarity=0.613 Sum_probs=132.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCe----------EEEEEEEeCCCCccccccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGT----------TVNLGLWDTAGQEDYNRLR 73 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~i~D~~g~~~~~~~~ 73 (168)
.++.+||+++|.+|+|||||+++|.+..+...+.++.+.++ ...+.+++. .+.+.+|||||++.+..++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 35789999999999999999999999988777777777666 345666665 7899999999999999999
Q ss_pred cccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHH
Q 030961 74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151 (168)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (168)
..+++.+|++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..++++.++..
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~ 170 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELADK 170 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHH
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccccc----------cCHHHHHHHHHH
Confidence 9999999999999999999999998 78988887765 5799999999999976654 778899999999
Q ss_pred hCCcEEEEecccCccCC
Q 030961 152 IGASYYIECSSKTQQVC 168 (168)
Q Consensus 152 ~~~~~~~~~Sa~~~~~i 168 (168)
+++ +++++||++|+||
T Consensus 171 ~~~-~~~~~Sa~~g~gi 186 (217)
T 2f7s_A 171 YGI-PYFETSAATGQNV 186 (217)
T ss_dssp TTC-CEEEEBTTTTBTH
T ss_pred CCC-cEEEEECCCCCCH
Confidence 998 8999999999985
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=9e-32 Score=180.35 Aligned_cols=148 Identities=35% Similarity=0.561 Sum_probs=132.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEE
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (168)
.+||+++|.+|+|||||+++|.+..+...+.++.+..+......++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 82 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence 58999999999999999999999988777778887777777888899999999999999999999888999999999999
Q ss_pred eCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCc
Q 030961 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 165 (168)
Q Consensus 88 d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (168)
|++++.++..+ ..|+..+.... .+.|+++++||+|+... . ...+++.++++.+++ +++++||++|
T Consensus 83 d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (166)
T 2ce2_X 83 AINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAAR-T----------VESRQAQDLARSYGI-PYIETSAKTR 149 (166)
T ss_dssp ETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCC-C----------SCHHHHHHHHHHHTC-CEEEECTTTC
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhhc-c----------cCHHHHHHHHHHcCC-eEEEecCCCC
Confidence 99999999998 78888887765 37999999999999763 2 567889999999998 8999999999
Q ss_pred cCC
Q 030961 166 QVC 168 (168)
Q Consensus 166 ~~i 168 (168)
.|+
T Consensus 150 ~gi 152 (166)
T 2ce2_X 150 QGV 152 (166)
T ss_dssp TTH
T ss_pred CCH
Confidence 985
No 75
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=198.42 Aligned_cols=152 Identities=31% Similarity=0.638 Sum_probs=124.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
.++.+||+++|.+|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 46789999999999999999999999888777677777666 45677889899999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...+. +..+++..++..+++ +++++||
T Consensus 110 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~vSA 177 (199)
T 3l0i_B 110 IVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSA 177 (199)
T ss_dssp EECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--CC----------CCSCC-CHHHHTTTC-CBCCCCC
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCcccc----------CCHHHHHHHHHHcCC-eEEEEEC
Confidence 999999999999998 78999887765 5799999999999976654 555677888999998 8999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|+||
T Consensus 178 ~~g~gv 183 (199)
T 3l0i_B 178 KNATNV 183 (199)
T ss_dssp ---HHH
T ss_pred CCCCCH
Confidence 999875
No 76
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.98 E-value=3.1e-31 Score=182.98 Aligned_cols=151 Identities=21% Similarity=0.377 Sum_probs=120.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCcc-ccccccccccCCcE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRPLSYRGADV 82 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~ 82 (168)
.+.+||+++|++|||||||+++|.+. .+...+.++..+.+.+.+.+++..+.+.+|||+|++. +..+...+++.+++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 45799999999999999999999963 3444333333333466778899999999999999876 55677778889999
Q ss_pred EEEEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEe
Q 030961 83 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 160 (168)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (168)
+++|||++++.+|..+ ..|...+.+.. .+.|+++|+||+|+...+. +..+++..++..+++ +|+++
T Consensus 84 ~i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~----------v~~~~~~~~a~~~~~-~~~e~ 151 (192)
T 2cjw_A 84 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXRE----------VSVSEGRAXAVVFDX-KFIET 151 (192)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhcccc----------ccHHHHHHHHHHhCC-ceEEe
Confidence 9999999999999998 78887776643 5799999999999976544 677888888888887 89999
Q ss_pred cccCccCC
Q 030961 161 SSKTQQVC 168 (168)
Q Consensus 161 Sa~~~~~i 168 (168)
||++|.||
T Consensus 152 SA~~g~~v 159 (192)
T 2cjw_A 152 SAAVQHNV 159 (192)
T ss_dssp BTTTTBSH
T ss_pred ccccCCCH
Confidence 99999985
No 77
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=2.3e-32 Score=188.48 Aligned_cols=151 Identities=25% Similarity=0.270 Sum_probs=123.7
Q ss_pred CcceeeEEEEECCCCCCHHHHHHHHhcCCCCCC-----------CCCceeecee-EEE-EECCeEEEEEEEeCCCCcccc
Q 030961 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTD-----------YIPTVFDNFS-ANV-VAEGTTVNLGLWDTAGQEDYN 70 (168)
Q Consensus 4 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~-----------~~~~~~~~~~-~~~-~~~~~~~~~~i~D~~g~~~~~ 70 (168)
...+.+||+++|.+|+|||||++.+.+ .+... +.+|.+.++. ..+ .+++..+.+.+|||||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 356789999999999999999965554 44443 2345544442 233 567788999999999999999
Q ss_pred ccccccccCCcEEEEEEeCC------ChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHH
Q 030961 71 RLRPLSYRGADVFVLAFSLV------SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 144 (168)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 144 (168)
.++..+++++|++++|||++ +.+++..+ ..|+..+.....+.|+++|+||+|+... +..++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~ 155 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA------------LPVEM 155 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC------------CCHHH
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc------------cCHHH
Confidence 99999999999999999999 56778777 7788888655578999999999999765 67889
Q ss_pred HHHHHHHhCCcEEEEecccCccCC
Q 030961 145 GEELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 145 ~~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
+++++..+++.+++++||++|+||
T Consensus 156 ~~~~~~~~~~~~~~~~Sa~~~~gv 179 (198)
T 3t1o_A 156 VRAVVDPEGKFPVLEAVATEGKGV 179 (198)
T ss_dssp HHHHHCTTCCSCEEECBGGGTBTH
T ss_pred HHHHHHhcCCceEEEEecCCCcCH
Confidence 999999998768999999999985
No 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=7.5e-32 Score=186.36 Aligned_cols=151 Identities=25% Similarity=0.451 Sum_probs=131.4
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
....++|+++|.+|+|||||+++|.++.+...+.++.+..+......++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 35679999999999999999999999988877788887777767778888999999999999999988889999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC---CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+... . +..+++..++..+++ +++++|
T Consensus 85 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~-~~~~~S 151 (199)
T 2gf0_A 85 LVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQR-E----------VDTREAQAVAQEWKC-AFMETS 151 (199)
T ss_dssp EEEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSSC-S----------SCHHHHHHHHHHHTC-EEEECB
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCcc-c----------cCHHHHHHHHHHhCC-eEEEEe
Confidence 99999999999987 66776665543 47899999999999753 2 567888899999998 899999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|++|.||
T Consensus 152 a~~~~gi 158 (199)
T 2gf0_A 152 AKMNYNV 158 (199)
T ss_dssp TTTTBSH
T ss_pred cCCCCCH
Confidence 9999985
No 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=4e-32 Score=191.04 Aligned_cols=150 Identities=28% Similarity=0.483 Sum_probs=129.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
..+.+||+++|.+|||||||+++|+.+.+...+.++.+.++ .....+++..+.+.+|||||++.+..++..++++++++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 45789999999999999999999887777666677776555 45677888999999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
++|||++++.++..+ ..|+..+.+..++.|+++|+||+|+..... ..++..++...++ +|+++||+
T Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------------~~~~~~~~~~~~~-~~~~~Sa~ 157 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV------------KAKSIVFHRKKNL-QYYDISAK 157 (221)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSCSS------------CGGGCCHHHHHTC-EEEECBGG
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCccccccc------------cHHHHHHHHHcCC-EEEEEeCC
Confidence 999999999999998 789999988878899999999999976532 2245667778887 99999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|.||
T Consensus 158 ~~~gi 162 (221)
T 3gj0_A 158 SNYNF 162 (221)
T ss_dssp GTBTT
T ss_pred CCCCH
Confidence 99986
No 80
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=1.1e-31 Score=188.31 Aligned_cols=152 Identities=28% Similarity=0.459 Sum_probs=126.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeE-EEEE-CCeEEEEEEEeCCCCccccccccccccCCcE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (168)
....+||+++|.+|+|||||+++|++..+...+.++.+..+.. .... .+..+.+.+|||||++.+..++..++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 4568999999999999999999999888776666666655533 3333 3455889999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
+++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+. +..+.+..++...++ +++++|
T Consensus 88 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 155 (218)
T 4djt_A 88 AILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNRQK----------ISKKLVMEVLKGKNY-EYFEIS 155 (218)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC--------------CCHHHHHHHTTTCCC-EEEEEB
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-cEEEEe
Confidence 9999999999999998 78988888766 4689999999999987655 778888899998888 899999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|++|.||
T Consensus 156 a~~g~gv 162 (218)
T 4djt_A 156 AKTAHNF 162 (218)
T ss_dssp TTTTBTT
T ss_pred cCCCCCH
Confidence 9999986
No 81
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=1.7e-30 Score=192.48 Aligned_cols=162 Identities=60% Similarity=1.053 Sum_probs=139.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (168)
..++|+++|.+|+|||||+++|.++.+...+.++....+...+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 46899999999999999999999998888888888888877888899999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhh--cCCCCCcccHHHHHHHHHHhCCcEEEEecccC
Q 030961 87 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKT 164 (168)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (168)
||++++.++..+...|+..+....++.|+++|+||+|+........ .....+.+..+++..++..+++.+|+++||++
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 313 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 313 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 9999999999985589998888777899999999999976422111 11122347888999999999976899999999
Q ss_pred ccCC
Q 030961 165 QQVC 168 (168)
Q Consensus 165 ~~~i 168 (168)
|+||
T Consensus 314 ~~gi 317 (332)
T 2wkq_A 314 QRGL 317 (332)
T ss_dssp CTTH
T ss_pred CcCH
Confidence 9985
No 82
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.95 E-value=1.9e-33 Score=195.56 Aligned_cols=163 Identities=62% Similarity=1.062 Sum_probs=136.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
.+.+||+++|.+|+|||||+++|.++.+...+.++....+...+.+++..+.+.+|||||++.+..++..+++++|++++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 56899999999999999999999998887777788877776677778888999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhc--CCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
|||++++.++..+...|+..+....++.|+++|+||+|+......... ......+..+++..+++..+..+++++||+
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~ 187 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
Confidence 999999999998844888888876668999999999999765321110 011123667778888888887689999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|+||
T Consensus 188 ~g~gi 192 (204)
T 3th5_A 188 TQRGL 192 (204)
Confidence 99986
No 83
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=2.7e-30 Score=179.09 Aligned_cols=146 Identities=18% Similarity=0.250 Sum_probs=111.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
.+.+||+++|++|||||||+++|.++.+. .+.+|.+.. ...+.+++ +.+.+|||||++.++.++..+++++|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 45789999999999999999999988764 455666544 34555666 788889999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHh-----------
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----------- 152 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 152 (168)
|||+++++++..+ ..|+..+.+.. .+.|+++|+||+|+... +..+++.+++...
T Consensus 99 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 165 (198)
T 1f6b_A 99 LVDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPEA------------ISEERLREMFGLYGQTTGKGSVSL 165 (198)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTTC------------CCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred EEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCcccc------------CCHHHHHHHhCccccccccccccc
Confidence 9999999999998 67777665542 57999999999999753 5567777766532
Q ss_pred -----CCcEEEEecccCccCC
Q 030961 153 -----GASYYIECSSKTQQVC 168 (168)
Q Consensus 153 -----~~~~~~~~Sa~~~~~i 168 (168)
...+++++||++|+||
T Consensus 166 ~~~~~~~~~~~~~SA~~g~gv 186 (198)
T 1f6b_A 166 KELNARPLEVFMCSVLKRQGY 186 (198)
T ss_dssp TTCCSCCEEEEECBTTTTBSH
T ss_pred ccccCceEEEEEEECCCCCCH
Confidence 2248999999999985
No 84
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=1.1e-30 Score=180.52 Aligned_cols=152 Identities=16% Similarity=0.149 Sum_probs=113.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
....+||+++|.+|||||||+++|.+..+.. .+.+|.+.... .++...+.+.+|||||++.+..++..+++++|++
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE---TFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE---EEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE---EEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 4578899999999999999999999998877 67777764332 2334557888899999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhC---------CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHH-HHHHHhC
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYS---------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-ELRKQIG 153 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~---------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 153 (168)
++|||+++++++..+ ..|+..+.+.. ++.|+++|+||+|+...... ..+...... .++...+
T Consensus 91 i~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~ 162 (199)
T 4bas_A 91 IFVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA-------AELVEILDLTTLMGDHP 162 (199)
T ss_dssp EEEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH-------HHHHHHHTHHHHHTTSC
T ss_pred EEEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH-------HHHHHHhcchhhccCCe
Confidence 999999999999998 66666665431 27999999999999766210 001111111 1123455
Q ss_pred CcEEEEecccCccCC
Q 030961 154 ASYYIECSSKTQQVC 168 (168)
Q Consensus 154 ~~~~~~~Sa~~~~~i 168 (168)
+ +++++||++|+||
T Consensus 163 ~-~~~~~Sa~~g~gv 176 (199)
T 4bas_A 163 F-VIFASNGLKGTGV 176 (199)
T ss_dssp E-EEEECBTTTTBTH
T ss_pred e-EEEEeeCCCccCH
Confidence 5 8999999999985
No 85
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=8.8e-30 Score=175.37 Aligned_cols=146 Identities=17% Similarity=0.251 Sum_probs=115.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
.+.+||+++|++|||||||+++|.++.+. .+.+|.+.. ...+.+++ +.+.+|||||++.++.++..+++++|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 45789999999999999999999998874 445665543 34555666 778889999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHh-----------
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----------- 152 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 152 (168)
|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+... +..+++.+.....
T Consensus 97 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 163 (190)
T 1m2o_B 97 LVDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPNA------------VSEAELRSALGLLNTTGSQRIEGQ 163 (190)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC------------CCHHHHHHHTTCSSCCC---CCSS
T ss_pred EEECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcCC------------CCHHHHHHHhCCcccccccccccc
Confidence 9999999999998 67777665432 67999999999999763 4555655554321
Q ss_pred CCcEEEEecccCccCC
Q 030961 153 GASYYIECSSKTQQVC 168 (168)
Q Consensus 153 ~~~~~~~~Sa~~~~~i 168 (168)
...+++++||++|+||
T Consensus 164 ~~~~~~~~Sa~~g~gi 179 (190)
T 1m2o_B 164 RPVEVFMCSVVMRNGY 179 (190)
T ss_dssp CCEEEEECBTTTTBSH
T ss_pred ceEEEEEeECCcCCCH
Confidence 2237999999999985
No 86
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=174.03 Aligned_cols=146 Identities=16% Similarity=0.246 Sum_probs=114.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
.+.+||+++|.+|+|||||+++|.+.. +...+.+|.+.. ...+.+++ +.+.+|||||++.+..++..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS-IEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE-EEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee-EEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 468999999999999999999999887 555566666532 33444554 67888999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC----CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH--H---hCCc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK--Q---IGAS 155 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~ 155 (168)
+|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+... ...++..+... . .++
T Consensus 96 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~- 161 (190)
T 2h57_A 96 FVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDA------------VTSVKVSQLLCLENIKDKPW- 161 (190)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSCE-
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccC------------CCHHHHHHHhChhhccCCce-
Confidence 99999999999998 66766665543 47899999999999754 34455555543 1 244
Q ss_pred EEEEecccCccCC
Q 030961 156 YYIECSSKTQQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~~~~i 168 (168)
+++++||++|+||
T Consensus 162 ~~~~~Sa~~~~gi 174 (190)
T 2h57_A 162 HICASDAIKGEGL 174 (190)
T ss_dssp EEEECBTTTTBTH
T ss_pred EEEEccCCCCcCH
Confidence 8999999999985
No 87
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=8.9e-30 Score=173.89 Aligned_cols=146 Identities=19% Similarity=0.261 Sum_probs=112.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
..+.+||+++|.+|+|||||+++|.+..+ ..+.++.+... ..+.+++ +.+.+|||||++.+..++..+++++|+++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 34689999999999999999999999887 44455555433 3444554 77888999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchh--CCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHH-----HHhCCcEE
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYY 157 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 157 (168)
+|||+++++++..+ ..|+..+.+. ..+.|+++|+||+|+... ...++..+.. ...++ ++
T Consensus 94 ~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~ 159 (181)
T 2h17_A 94 VVVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQW-HI 159 (181)
T ss_dssp EEEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHTTGGGCCSSCE-EE
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCcccC------------CCHHHHHHHhCcccccCCce-EE
Confidence 99999999999998 5666665543 268999999999999754 2233333322 12344 89
Q ss_pred EEecccCccCC
Q 030961 158 IECSSKTQQVC 168 (168)
Q Consensus 158 ~~~Sa~~~~~i 168 (168)
+++||++|+||
T Consensus 160 ~~~Sa~~g~gi 170 (181)
T 2h17_A 160 QACCALTGEGL 170 (181)
T ss_dssp EECBTTTTBTH
T ss_pred EEccCCCCcCH
Confidence 99999999985
No 88
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=1.2e-30 Score=175.14 Aligned_cols=142 Identities=17% Similarity=0.235 Sum_probs=108.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (168)
+||+++|++|+|||||+++|.++.+.. +.+|.+.. ...+.. ..+.+.+|||||++.+..++..+++++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999887754 45665532 223333 44778889999999999999899999999999999
Q ss_pred CCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHH-----HHHHhCCcEEEEec
Q 030961 89 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-----LRKQIGASYYIECS 161 (168)
Q Consensus 89 ~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~S 161 (168)
+++++++..+ ..|+..+.... ++.|+++|+||+|+.... ..++... .+...++ +++++|
T Consensus 77 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~S 142 (164)
T 1r8s_A 77 SNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRNW-YIQATC 142 (164)
T ss_dssp TTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCCE-EEEECB
T ss_pred CCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCCC------------CHHHHHHHhCcccccCccE-EEEEcc
Confidence 9999999988 66776665432 589999999999996542 1122111 1112333 799999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|++|.||
T Consensus 143 a~~~~gi 149 (164)
T 1r8s_A 143 ATSGDGL 149 (164)
T ss_dssp TTTTBTH
T ss_pred cCCCcCH
Confidence 9999985
No 89
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=4.7e-30 Score=177.46 Aligned_cols=156 Identities=13% Similarity=0.187 Sum_probs=113.4
Q ss_pred CcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece---eEEEEEC-CeEEEEEEEeCCCCccccccc---ccc
Q 030961 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVVAE-GTTVNLGLWDTAGQEDYNRLR---PLS 76 (168)
Q Consensus 4 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~i~D~~g~~~~~~~~---~~~ 76 (168)
.+++.+||+++|.+|||||||++++.+. +... ++.+..+ .....+. +..+.+.+|||+|++.|..+. ..+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 3567899999999999999999988774 3222 3333333 1222333 567889999999999987766 789
Q ss_pred ccCCcEEEEEEeCCCh--hHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH----
Q 030961 77 YRGADVFVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK---- 150 (168)
Q Consensus 77 ~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 150 (168)
+++++++++|||++++ +++..+ ..|+..+....++.|+++|+||+|+........ ..+.+..+++..++.
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIE---TQRDIHQRANDDLADAGLE 168 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHH---HHHHHHHHHHHHHHHTTCT
T ss_pred cccCCEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCchhhhhH---HHhHHHHHHHHHHHHhhhh
Confidence 9999999999999997 677776 677777755567899999999999865321000 011266677888888
Q ss_pred HhCCcEEEEecccCccCC
Q 030961 151 QIGASYYIECSSKTQQVC 168 (168)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~i 168 (168)
..++ +|+++||++ +||
T Consensus 169 ~~~~-~~~e~Sa~~-~~v 184 (196)
T 3llu_A 169 KLHL-SFYLTSIYD-HSI 184 (196)
T ss_dssp TSCE-EEEEECTTS-THH
T ss_pred cCCc-ceEEEEech-hhH
Confidence 6676 899999999 875
No 90
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=7.8e-30 Score=175.23 Aligned_cols=146 Identities=24% Similarity=0.297 Sum_probs=114.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
.+.+||+++|.+|+|||||+++|.+..+...+.+|.+..+.. +....+.+.+||+||++.+..++..+++++|++++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK---ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE---EEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE---EEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 468999999999999999999999998877777877766542 23345778889999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchh-C-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHH-----HHhCCcEEE
Q 030961 86 AFSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYYI 158 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~-~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 158 (168)
|||++++.++..+ ..|+..+... . .+.|+++|+||+|+.... ..++..... ...++ +++
T Consensus 97 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~ 162 (188)
T 1zd9_A 97 MVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGAL------------DEKELIEKMNLSAIQDREI-CCY 162 (188)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccCC------------CHHHHHHHhChhhhccCCe-eEE
Confidence 9999999999998 5666665443 2 689999999999997542 122211111 12233 789
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|.||
T Consensus 163 ~~SA~~g~gv 172 (188)
T 1zd9_A 163 SISCKEKDNI 172 (188)
T ss_dssp ECCTTTCTTH
T ss_pred EEECCCCCCH
Confidence 9999999985
No 91
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=1e-28 Score=171.09 Aligned_cols=151 Identities=32% Similarity=0.567 Sum_probs=129.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
+..++++++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.++.++..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 4579999999999999999999999988777778877666 456788999999999999999999988888999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
+|+|+.+..++..+ ..|+..+.... .+.|+++++||+|+...+. +..++++.++...++ .++++||+
T Consensus 83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~~d~Sal 150 (199)
T 2f9l_A 83 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNNL-SFIETSAL 150 (199)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence 99999999999887 67887776654 5789999999999976554 667889999999998 89999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
++.|+
T Consensus 151 ~~~~i 155 (199)
T 2f9l_A 151 DSTNV 155 (199)
T ss_dssp TCTTH
T ss_pred CCCCH
Confidence 99874
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.3e-29 Score=173.90 Aligned_cols=145 Identities=19% Similarity=0.254 Sum_probs=110.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
.+.++|+++|.+|+|||||+++|.++.+. .+.+|.+.. ...+.+++ +.+.+|||||++.+..++..+++++|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 56899999999999999999999988775 555665533 33444554 778889999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH-----HhCCcEEE
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-----QIGASYYI 158 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 158 (168)
|+|+++++++..+ ..|+..+.+.. .+.|+++|+||+|+... ...++..+... ..++ +++
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~ 155 (187)
T 1zj6_A 90 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQW-HIQ 155 (187)
T ss_dssp EEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSCE-EEE
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcCC------------CCHHHHHHHhChhhhcCCCc-EEE
Confidence 9999999999998 67777776542 68999999999999754 23344333332 2344 899
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|+||
T Consensus 156 ~~Sa~~g~gi 165 (187)
T 1zj6_A 156 ACCALTGEGL 165 (187)
T ss_dssp ECBTTTTBTH
T ss_pred EccCCCCcCH
Confidence 9999999985
No 93
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=4.5e-29 Score=170.87 Aligned_cols=145 Identities=17% Similarity=0.228 Sum_probs=112.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
.+.+||+++|++|+|||||+++|.++. ...+.+|.+.. ...+.++ .+.+.+|||||++.+..++..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 578999999999999999999999887 56666766533 2334444 4678889999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchh--CCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH-----HhCCcEEE
Q 030961 86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-----QIGASYYI 158 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 158 (168)
|+|++++.++..+ ..|+..+.+. ..+.|+++|+||+|+.... ..++..+... ..++ +++
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~ 157 (186)
T 1ksh_A 92 VVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGAL------------SCNAIQEALELDSIRSHHW-RIQ 157 (186)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCCC------------CHHHHHHHhChhhccCCce-EEE
Confidence 9999999999988 6666666543 2679999999999997652 2233222221 2344 899
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|+||
T Consensus 158 ~~Sa~~~~gi 167 (186)
T 1ksh_A 158 GCSAVTGEDL 167 (186)
T ss_dssp ECCTTTCTTH
T ss_pred EeeCCCCCCH
Confidence 9999999985
No 94
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=2e-29 Score=170.07 Aligned_cols=150 Identities=16% Similarity=0.179 Sum_probs=111.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
.+.+||+++|++|+|||||+++|.++.+. .+.++.+.. ...+.++ ...+.+|||||++.+..++..+++++|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN-VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE-EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc-eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 45799999999999999999999988774 345555433 2334444 4678889999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
|||++++.++... ..|+..+.+.. .+.|+++|+||+|+...... ..+........+...++ +++++||+
T Consensus 81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 151 (171)
T 1upt_A 81 VVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDMEQAMTS-------SEMANSLGLPALKDRKW-QIFKTSAT 151 (171)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-------HHHHHHHTGGGCTTSCE-EEEECCTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCcCCCCH-------HHHHHHhCchhccCCce-EEEECcCC
Confidence 9999999999988 55665554432 58999999999999765210 00111111122233455 89999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|+||
T Consensus 152 ~~~gi 156 (171)
T 1upt_A 152 KGTGL 156 (171)
T ss_dssp TCTTH
T ss_pred CCcCH
Confidence 99985
No 95
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=1e-30 Score=179.10 Aligned_cols=149 Identities=22% Similarity=0.341 Sum_probs=109.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCceeecee-EEEEE---CCeEEEEEEEeCCCCccccccccccccCCc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNFS-ANVVA---EGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (168)
.+||+++|++|||||||+++|.+. .+...+.+|.+.++. ..+.+ ++..+.+.+|||+|++.+..+++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999985 455566777766553 23322 345778999999999999999999999999
Q ss_pred EEEEEEeCCCh-hHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCccc---HHHHHHHHHHhCCc--
Q 030961 82 VFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT---TAQGEELRKQIGAS-- 155 (168)
Q Consensus 82 ~~i~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-- 155 (168)
++++|||++++ .++..+ ..|+..+....++.|+++|+||+|+...+. +. .+.+..++..+++.
T Consensus 82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 150 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQ----------RKACMSKITKELLNKRGFPAI 150 (184)
T ss_dssp EEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHH----------HHHHHHHHHHHTTTCTTSCEE
T ss_pred EEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchh----------hHHHHHHHHHHHHHhcCCcch
Confidence 99999999997 578887 789988877666899999999999976543 22 34456677667773
Q ss_pred -EEEEecccCcc-C
Q 030961 156 -YYIECSSKTQQ-V 167 (168)
Q Consensus 156 -~~~~~Sa~~~~-~ 167 (168)
+|+++||++|. |
T Consensus 151 ~~~~~~Sa~~~~~~ 164 (184)
T 2zej_A 151 RDYHFVNATEESDA 164 (184)
T ss_dssp EEEEECCTTSCCHH
T ss_pred hheEEEecccCchh
Confidence 39999999985 5
No 96
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.96 E-value=4.9e-28 Score=166.80 Aligned_cols=151 Identities=31% Similarity=0.560 Sum_probs=132.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
+..++++++|++|||||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+||++|.+.+..++..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 4678999999999999999999999988878888888776 557788999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
+|+|..+..+++.+ ..|+..+.... .+.|+++++||+|+...+. ...++++.++...++ .++++||+
T Consensus 107 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~ld~Sal 174 (191)
T 1oix_A 107 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNGL-SFIETSAL 174 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999887 67887776544 5789999999999976544 667889999999998 89999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
++.|+
T Consensus 175 d~~~v 179 (191)
T 1oix_A 175 DSTNV 179 (191)
T ss_dssp TCTTH
T ss_pred CCCCH
Confidence 99874
No 97
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=2.6e-30 Score=178.32 Aligned_cols=151 Identities=16% Similarity=0.213 Sum_probs=104.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
..+.+||+++|++|+|||||+++|.++.+.. +.+|.+.. ...+.. ..+.+.+|||||++.+..++..+++++|+++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEE-EEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCcee-EEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3568999999999999999999999887642 34444321 223333 3477888999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 162 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (168)
+|||+++++++..+ ..|+..+.... .+.|+++|+||+|+..... ...+..+.+...+...++ +++++||
T Consensus 102 lv~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~i~~~~~~~~~~~~~~-~~~~~SA 172 (192)
T 2b6h_A 102 FVVDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNAMP-------VSELTDKLGLQHLRSRTW-YVQATCA 172 (192)
T ss_dssp EEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHTTGGGCSSCCE-EEEECBT
T ss_pred EEEECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCCCC-------HHHHHHHhCcccccCCce-EEEECcC
Confidence 99999999999998 66776665432 5799999999999965421 000111111111112333 7999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|.||
T Consensus 173 ~~g~gi 178 (192)
T 2b6h_A 173 TQGTGL 178 (192)
T ss_dssp TTTBTH
T ss_pred CCcCCH
Confidence 999985
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=1.3e-29 Score=174.08 Aligned_cols=150 Identities=19% Similarity=0.202 Sum_probs=110.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
++.+||+++|++|+|||||+++|.++.+.. +.+|.+.. ...+..+ .+.+.+|||||++.+..++..+++++|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 568999999999999999999998877643 44555422 2334444 4678889999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEeccc
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 163 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (168)
|+|+++++++..+ ..|+..+.... .+.|+++|+||+|+...... ..+....+...+...++ +++++||+
T Consensus 96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 166 (189)
T 2x77_A 96 VVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDAASE-------AEIAEQLGVSSIMNRTW-TIVKSSSK 166 (189)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCH-------HHHHHHTTGGGCCSSCE-EEEECCTT
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCH-------HHHHHHhChhhccCCce-EEEEccCC
Confidence 9999999999988 56666554432 57999999999999765210 00111111112223344 79999999
Q ss_pred CccCC
Q 030961 164 TQQVC 168 (168)
Q Consensus 164 ~~~~i 168 (168)
+|+||
T Consensus 167 ~~~gi 171 (189)
T 2x77_A 167 TGDGL 171 (189)
T ss_dssp TCTTH
T ss_pred CccCH
Confidence 99985
No 99
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=2.8e-29 Score=171.55 Aligned_cols=146 Identities=21% Similarity=0.277 Sum_probs=110.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
+...+||+++|++|||||||+++|.+..+ ..+.+|.+.. ...+.++ .+.+.+|||||++.++.++..+++++|+++
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN-IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE-EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE-EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 35789999999999999999999998754 2334444422 2334444 467888999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchh-C-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHH-----HHhCCcEE
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYY 157 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~-~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 157 (168)
+|||+++++++..+ ..|+..+.+. . .+.|+++|+||+|+..... .++..+.. ...++ ++
T Consensus 89 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~~ 154 (181)
T 1fzq_A 89 YVIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAAP------------ASEIAEGLNLHTIRDRVW-QI 154 (181)
T ss_dssp EEEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC------------HHHHHHHTTGGGCCSSCE-EE
T ss_pred EEEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCCC------------HHHHHHHhCchhccCCce-EE
Confidence 99999999999988 6676665443 2 6799999999999976532 22222211 12234 79
Q ss_pred EEecccCccCC
Q 030961 158 IECSSKTQQVC 168 (168)
Q Consensus 158 ~~~Sa~~~~~i 168 (168)
+++||++|+||
T Consensus 155 ~~~Sa~~g~gi 165 (181)
T 1fzq_A 155 QSCSALTGEGV 165 (181)
T ss_dssp EECCTTTCTTH
T ss_pred EEccCCCCCCH
Confidence 99999999985
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=9.6e-29 Score=168.62 Aligned_cols=145 Identities=12% Similarity=0.173 Sum_probs=108.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
.+.+||+++|++|+|||||+++|.++.+ ..+.++.+.. ...+.+++ ..+.+|||||++.+..++..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 5789999999999999999999998776 4445555533 23344444 778889999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH-----HhCCcEEE
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-----QIGASYYI 158 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 158 (168)
|+|++++.++..+ ..|+..+.+.. .+.|+++|+||+|+... ...++..+... ..++ +++
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~ 157 (183)
T 1moz_A 92 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGA------------LSASEVSKELNLVELKDRSW-SIV 157 (183)
T ss_dssp EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTC------------CCHHHHHHHTTTTTCCSSCE-EEE
T ss_pred EEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCce-EEE
Confidence 9999999999998 67777766542 68999999999999754 22333333222 1233 799
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|+||
T Consensus 158 ~~Sa~~~~gi 167 (183)
T 1moz_A 158 ASSAIKGEGI 167 (183)
T ss_dssp EEBGGGTBTH
T ss_pred EccCCCCcCH
Confidence 9999999985
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=3.5e-28 Score=169.98 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=92.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCe-EEEEEEEeCCCCccccc-cccccccCCcE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQEDYNR-LRPLSYRGADV 82 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~~~ 82 (168)
+.+.+||+++|++|+|||||+++|++..+...+.++. ..+. .+.+++. .+.+.+|||||++.+.. ++..+++++++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSA-IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEE-EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeE-EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 4568999999999999999999999988876655433 2222 2555544 68899999999999887 78888999999
Q ss_pred EEEEEeCCChh-HHHHHHHhHHHHHchh---CCCCcEEEEeeCCcccccc
Q 030961 83 FVLAFSLVSRA-SYENVLKKWIPELQHY---SPGVPVVLVGTKLDLREDK 128 (168)
Q Consensus 83 ~i~v~d~~~~~-s~~~~~~~~~~~l~~~---~~~~p~ivv~nK~D~~~~~ 128 (168)
+++|||+++.. ++....+.|...+... ..+.|+++|+||+|+....
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 99999999854 4666545566655442 2578999999999997653
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.2e-28 Score=177.04 Aligned_cols=150 Identities=17% Similarity=0.274 Sum_probs=113.7
Q ss_pred cceeeEEEEECCC---------CCCHHHHHHHHhc---CCCCCCCCCce-eecee-EEE--------------EECCeEE
Q 030961 5 ASRFIKCVTVGDG---------AVGKTCMLICYTS---NKFPTDYIPTV-FDNFS-ANV--------------VAEGTTV 56 (168)
Q Consensus 5 ~~~~~~i~vvG~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~-~~~--------------~~~~~~~ 56 (168)
..+.+||+++|.+ |||||||+++|.+ ..+...+.++. +.++. +.+ .+++..+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4567999999999 9999999999999 55666666665 33331 111 2467788
Q ss_pred EEEEEe-----------------------CCCCcccccccccccc---------------------CCcEEEEEEeCCCh
Q 030961 57 NLGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFVLAFSLVSR 92 (168)
Q Consensus 57 ~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~ 92 (168)
.+.+|| ++|++.|..++..+++ ++|++++|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 999999 7778888888888877 79999999999998
Q ss_pred --hHHHHHHHhHHHHHchh-C-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHh-CCcEEEEecccCccC
Q 030961 93 --ASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-GASYYIECSSKTQQV 167 (168)
Q Consensus 93 --~s~~~~~~~~~~~l~~~-~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~ 167 (168)
.+++.+ ..|+..+.+. . .+.|+++|+||+|+...+. + ++++.++... ++ +++++||++|.|
T Consensus 176 ~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v--~~~~~~~~~~~~~-~~~e~SAk~g~g 241 (255)
T 3c5h_A 176 MNRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----------I--RDAHTFALSKKNL-QVVETSARSNVN 241 (255)
T ss_dssp ---CHHHH-HHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH----------H--HHHHHHHHTSSSC-CEEECBTTTTBS
T ss_pred chhhHHHH-HHHHHHHHHHhccCCCCEEEEEEcccccccHH----------H--HHHHHHHHhcCCC-eEEEEECCCCCC
Confidence 999998 7888888765 2 6899999999999976543 3 5777888764 66 899999999998
Q ss_pred C
Q 030961 168 C 168 (168)
Q Consensus 168 i 168 (168)
|
T Consensus 242 v 242 (255)
T 3c5h_A 242 V 242 (255)
T ss_dssp H
T ss_pred H
Confidence 5
No 103
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=1.3e-27 Score=175.91 Aligned_cols=151 Identities=20% Similarity=0.252 Sum_probs=114.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC--C-CCCCCceeeceeEEEEECCeEEEEEEEeCCCCccc-----ccccccccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKF--P-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-----NRLRPLSYR 78 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~ 78 (168)
..+||+++|++|||||||+++|+++.. . ..+.+|.+..+. ...+++ .+.+.+|||||++.+ ..++..+++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 468999999999999999999998732 2 134455554443 233444 678999999999988 678888899
Q ss_pred CCcEEEEEEeCCChhHHHHHHHhHHH---HHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCC-
Q 030961 79 GADVFVLAFSLVSRASYENVLKKWIP---ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA- 154 (168)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~---~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (168)
++|++++|||++++++++.+ ..|.. .+....++.|+++|+||+|+.....+. ....+..+++.+++..+|+
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~----~~~~v~~~~~~~~~~~~g~~ 154 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKRE----ELFQIMMKNLSETSSEFGFP 154 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH----HHHHHHHHHHHHHHHTTTCC
T ss_pred cCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccchhhhh----HHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999987 56644 444445789999999999998632100 0001455788999999983
Q ss_pred -cEEEEecccC
Q 030961 155 -SYYIECSSKT 164 (168)
Q Consensus 155 -~~~~~~Sa~~ 164 (168)
.+++++||++
T Consensus 155 ~~~~~~tSa~~ 165 (307)
T 3r7w_A 155 NLIGFPTSIWD 165 (307)
T ss_dssp SCEEEECCTTS
T ss_pred CeEEEEeeecC
Confidence 5999999998
No 104
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=2.4e-27 Score=159.61 Aligned_cols=141 Identities=16% Similarity=0.143 Sum_probs=102.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccc------ccccccc--
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR------LRPLSYR-- 78 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~-- 78 (168)
.++|+++|++|+|||||+++|.+..+.....++.+... ...+.+++ ..+.+|||||++.+.. +...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 58999999999999999999998776544445444333 33455554 5688899999988753 2244454
Q ss_pred CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
+++++++|+|+++.++. ..|+..+.+ .+.|+++|+||+|+...+. +. .++..+++.+++ +++
T Consensus 81 ~~~~~i~v~D~~~~~~~----~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~----------~~-~~~~~~~~~~~~-~~~ 142 (165)
T 2wji_A 81 KPDLVVNIVDATALERN----LYLTLQLME--MGANLLLALNKMDLAKSLG----------IE-IDVDKLEKILGV-KVV 142 (165)
T ss_dssp CCSEEEEEEETTCHHHH----HHHHHHHHH--TTCCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-CEE
T ss_pred CCCEEEEEecCCchhHh----HHHHHHHHh--cCCCEEEEEEchHhccccC----------hh-hHHHHHHHHhCC-CEE
Confidence 89999999999886543 346666655 3689999999999975433 22 236778888887 899
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|+||
T Consensus 143 ~~SA~~~~~v 152 (165)
T 2wji_A 143 PLSAAKKMGI 152 (165)
T ss_dssp ECBGGGTBSH
T ss_pred EEEcCCCCCH
Confidence 9999999985
No 105
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.95 E-value=1.5e-28 Score=180.27 Aligned_cols=147 Identities=15% Similarity=0.158 Sum_probs=107.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CCCCceeeceeEEEEECCeEEEEEEEeCCCCccccc---cccccccCCcEE
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPT---DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR---LRPLSYRGADVF 83 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~ 83 (168)
||+++|++|||||||++++.+..+.. .+.+|++..+.. ++ ..+++++|||+|+++|+. .++.++++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 68999999999999999988664432 245666666542 22 348899999999999964 357889999999
Q ss_pred EEEEeCCCh--hHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHH----hCCcEE
Q 030961 84 VLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ----IGASYY 157 (168)
Q Consensus 84 i~v~d~~~~--~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 157 (168)
++|||++++ +++... ..|+..+.+..+++|++++|||+|+..+..+.. ..+.+..++++++++. +++ +|
T Consensus 77 IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~---~~R~V~~~~~~~la~~~~~~~~i-~f 151 (331)
T 3r7w_B 77 VYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVD---AQRDIMQRTGEELLELGLDGVQV-SF 151 (331)
T ss_dssp EEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHH---HHHHHHHHHHHTTSSSSCSCCCE-EE
T ss_pred EEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCchhhhhh---HHHHhhHHHHHHHHhhcccccCc-eE
Confidence 999999998 333333 344555555557899999999999976521000 0012677788888886 566 89
Q ss_pred EEecccCc
Q 030961 158 IECSSKTQ 165 (168)
Q Consensus 158 ~~~Sa~~~ 165 (168)
|+|||+++
T Consensus 152 ~eTSAkd~ 159 (331)
T 3r7w_B 152 YLTSIFDH 159 (331)
T ss_dssp ECCCSSSS
T ss_pred EEeccCCC
Confidence 99999874
No 106
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=1.2e-26 Score=157.53 Aligned_cols=145 Identities=18% Similarity=0.236 Sum_probs=105.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccccccccccCCcEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (168)
..+.++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++.. +.+|||||++.+..++...+..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 46789999999999999999999999888776666665554 3456666654 56799999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHh-------C-Cc
Q 030961 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-------G-AS 155 (168)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~ 155 (168)
++|+|++++...... .++..+.. .+.|+++|+||+|+.... .++........ + ..
T Consensus 83 i~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 145 (178)
T 2lkc_A 83 ILVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPEAN-------------PDRVMQELMEYNLVPEEWGGDT 145 (178)
T ss_dssp EEEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSCSC-------------HHHHHHHHTTTTCCBTTTTSSE
T ss_pred EEEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCcCC-------------HHHHHHHHHhcCcChhHcCCcc
Confidence 999999884322221 12223332 478999999999997542 12222222222 2 13
Q ss_pred EEEEecccCccCC
Q 030961 156 YYIECSSKTQQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~~~~i 168 (168)
+++++||++|+||
T Consensus 146 ~~~~~Sa~~~~gv 158 (178)
T 2lkc_A 146 IFCKLSAKTKEGL 158 (178)
T ss_dssp EEEECCSSSSHHH
T ss_pred cEEEEecCCCCCH
Confidence 8999999999875
No 107
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=3.7e-27 Score=184.99 Aligned_cols=149 Identities=21% Similarity=0.269 Sum_probs=112.0
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEE-------E--ECCeEEEEEEEeCCCCccccccccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-------V--AEGTTVNLGLWDTAGQEDYNRLRPL 75 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~i~D~~g~~~~~~~~~~ 75 (168)
....+||+++|.+|||||||+++|.+..+...+.+|.+.++.... . .++..+.+.+||+||++.+..+...
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456899999999999999999999999988777888877764332 1 1334688999999999999999999
Q ss_pred cccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCc
Q 030961 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (168)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (168)
+++.++++++|+|+++.+ .. ..|+..+....++.|+++|+||+|+...+. +..++++.++...++
T Consensus 118 ~l~~~d~ii~V~D~s~~~---~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~- 182 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDS---NK-HYWLRHIEKYGGKSPVIVVMNKIDENPSYN----------IEQKKINERFPAIEN- 182 (535)
T ss_dssp HHHSSEEEEEEECGGGGG---GH-HHHHHHHHHHSSSCCEEEEECCTTTCTTCC----------CCHHHHHHHCGGGTT-
T ss_pred HccCCcEEEEEEeCCCch---hH-HHHHHHHHHhCCCCCEEEEEECCCcccccc----------cCHHHHHHHHHhcCC-
Confidence 999999999999987754 33 678888888777899999999999987654 677888888888887
Q ss_pred EEEEecccCccCC
Q 030961 156 YYIECSSKTQQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~~~~i 168 (168)
+++++||++|.||
T Consensus 183 ~~~~vSA~~g~gi 195 (535)
T 3dpu_A 183 RFHRISCKNGDGV 195 (535)
T ss_dssp CEEECCC-----C
T ss_pred ceEEEecCcccCH
Confidence 8999999999986
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=4.6e-27 Score=183.04 Aligned_cols=145 Identities=18% Similarity=0.253 Sum_probs=110.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
.+.+||+++|.+|+|||||+++|.+..+.. +.+|.+..+. .++...+.+.+|||+|++.+..++..+++++|++++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~---~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE---TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE---EEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE---EEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 457999999999999999999999988643 4556554432 233344678889999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHH-----HHhCCcEEE
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYYI 158 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 158 (168)
|||++++.++..+ ..|+..+.+.. .++|++||+||+|+.... ..++..... ...++ +++
T Consensus 396 V~D~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~ 461 (497)
T 3lvq_E 396 VVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAM------------KPHEIQEKLGLTRIRDRNW-YVQ 461 (497)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTSGGGTTCEEEEEEECCSSSSCC------------CHHHHHHHTTCTTCCSSCE-EEE
T ss_pred EEECcchhHHHHH-HHHHHHHhhhhhcCCCcEEEEEECCCCCcCC------------CHHHHHHHhchhhhhcCCe-EEE
Confidence 9999999999998 55655554432 589999999999997642 222222211 11233 699
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|+||
T Consensus 462 ~~SA~~g~gi 471 (497)
T 3lvq_E 462 PSCATSGDGL 471 (497)
T ss_dssp ECBTTTTBTH
T ss_pred EEECCCCCCH
Confidence 9999999985
No 109
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.94 E-value=1.5e-26 Score=163.41 Aligned_cols=150 Identities=10% Similarity=0.038 Sum_probs=101.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCcccc---------ccccc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN---------RLRPL 75 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~ 75 (168)
...++|+++|.+|+|||||+++|++..+.....+..+... .......+ ..+.+|||||+.... ..+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4579999999999999999999998876422111111111 11222233 678889999984311 11123
Q ss_pred cccCCcEEEEEEeCCChhHHHHH-HHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccH---HHHHHHHHH
Q 030961 76 SYRGADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT---AQGEELRKQ 151 (168)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 151 (168)
.+..+|++++|||++++.++... ...|+..+....++.|+++|+||+|+...+. +.. +.+..++..
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~ 174 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS----------LSIDNKLLIKQILDN 174 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C----------CCHHHHHHHHHHHHH
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh----------hHHHHHHHHHHHHHh
Confidence 36788999999999998876421 1456666666545899999999999976543 333 356677777
Q ss_pred hC--CcEEEEecccCccCC
Q 030961 152 IG--ASYYIECSSKTQQVC 168 (168)
Q Consensus 152 ~~--~~~~~~~Sa~~~~~i 168 (168)
.+ + +++++||++|+||
T Consensus 175 ~~~~~-~~~~~SA~~g~gi 192 (228)
T 2qu8_A 175 VKNPI-KFSSFSTLTGVGV 192 (228)
T ss_dssp CCSCE-EEEECCTTTCTTH
T ss_pred cCCCc-eEEEEecccCCCH
Confidence 66 5 8999999999985
No 110
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=9e-28 Score=178.17 Aligned_cols=146 Identities=17% Similarity=0.235 Sum_probs=103.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
.+.+||+++|.+|+|||||+++|.+..+... .+|.+..+ ..++...+.+.+|||||++.+..++..+++.+|++++
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~---~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE---EEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE---EEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 3567999999999999999999998876433 23333222 2233344778889999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHH-----HHhCCcEEEE
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYYIE 159 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 159 (168)
|||++++.++..+...|...+.... +++|++||+||+|+..... .++..... ...++ ++++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~------------~~~i~~~~~~~~~~~~~~-~~~~ 305 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN------------AAEITDKLGLHSLRHRNW-YIQA 305 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC------------HHHHHHHHTCTTCCSSCE-EEEE
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC------------HHHHHHHhchhhhhcCCC-EEEE
Confidence 9999999999998444555554443 6899999999999976532 22221111 11233 7999
Q ss_pred ecccCccCC
Q 030961 160 CSSKTQQVC 168 (168)
Q Consensus 160 ~Sa~~~~~i 168 (168)
+||++|+||
T Consensus 306 vSAk~g~gi 314 (329)
T 3o47_A 306 TCATSGDGL 314 (329)
T ss_dssp CBTTTTBTH
T ss_pred EECCCCcCH
Confidence 999999985
No 111
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=1.1e-27 Score=167.91 Aligned_cols=149 Identities=11% Similarity=0.124 Sum_probs=105.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCC---CCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccC--
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT---DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG-- 79 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~-- 79 (168)
..+.++|+++|++|+|||||+++|.+..+.. .+.++.+..+ ....+.+|||||++.++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 4578999999999999999999999987643 2344443333 34567889999999998888888877
Q ss_pred --CcEEEEEEeCC-ChhHHHHHHHhHHHHHchh-----CCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHH
Q 030961 80 --ADVFVLAFSLV-SRASYENVLKKWIPELQHY-----SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151 (168)
Q Consensus 80 --~~~~i~v~d~~-~~~s~~~~~~~~~~~l~~~-----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (168)
++++++|+|++ ++.++... ..|+..+... ..+.|+++|+||+|+........ ......+++..++..
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~----~~~~l~~~~~~~~~~ 155 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARPPSK----IKDALESEIQKVIER 155 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHH----HHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHH----HHHHHHHHHHHHHHH
Confidence 89999999999 88888887 5565555442 25799999999999986643000 000125667788877
Q ss_pred hCCcEEEEecccCccC
Q 030961 152 IGASYYIECSSKTQQV 167 (168)
Q Consensus 152 ~~~~~~~~~Sa~~~~~ 167 (168)
.+. +|+++||++|.+
T Consensus 156 ~~~-~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 156 RKK-SLNEVERKINEE 170 (218)
T ss_dssp HHH-HHHC--------
T ss_pred Hhc-cccccccccccc
Confidence 776 899999998865
No 112
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=8e-26 Score=166.35 Aligned_cols=153 Identities=15% Similarity=0.078 Sum_probs=113.2
Q ss_pred CCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCe-EEEEEEEeCCCCcccc----------c
Q 030961 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQEDYN----------R 71 (168)
Q Consensus 3 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~----------~ 71 (168)
+++.+.-.|+++|.+|+|||||+|+|++.++........++........... ..++.+|||||..... .
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 3456778899999999999999999999887532222222222222222222 5678889999986654 4
Q ss_pred cccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHH
Q 030961 72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151 (168)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (168)
....+++.+|++++|+|++++.+.... ..|+..+.. .+.|+++|+||+|+..... ...+....+...
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~--~~~pvilV~NK~Dl~~~~~----------~~~~~~~~l~~~ 151 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKP--LNKPVIVVINKIDKIGPAK----------NVLPLIDEIHKK 151 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGG--GCCCEEEEEECGGGSSSGG----------GGHHHHHHHHHH
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHh--cCCCEEEEEECccCCCCHH----------HHHHHHHHHHHh
Confidence 455677899999999999999888876 666888877 4689999999999974333 556777888888
Q ss_pred hC-CcEEEEecccCccCC
Q 030961 152 IG-ASYYIECSSKTQQVC 168 (168)
Q Consensus 152 ~~-~~~~~~~Sa~~~~~i 168 (168)
++ ..+++++||++|+||
T Consensus 152 ~~~~~~i~~vSA~~g~gv 169 (308)
T 3iev_A 152 HPELTEIVPISALKGANL 169 (308)
T ss_dssp CTTCCCEEECBTTTTBSH
T ss_pred ccCCCeEEEEeCCCCCCH
Confidence 74 448999999999985
No 113
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=3.1e-26 Score=156.87 Aligned_cols=144 Identities=16% Similarity=0.154 Sum_probs=105.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccc------cccccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR------LRPLSY 77 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~ 77 (168)
+.+.++|+++|++|+|||||+++|.+..+.....++.+... ...+..++ ..+.+|||||++.+.. ++..++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence 34679999999999999999999998765433344443333 33445554 6778899999988752 344444
Q ss_pred c--CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCc
Q 030961 78 R--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (168)
Q Consensus 78 ~--~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (168)
. .++++++|+|.++ ++.. ..|+..+.. .+.|+++++||+|+...+. +. +++..++..+++
T Consensus 82 ~~~~~~~~i~v~d~~~---~~~~-~~~~~~~~~--~~~piilv~nK~Dl~~~~~----------~~-~~~~~~~~~~~~- 143 (188)
T 2wjg_A 82 INEKPDLVVNIVDATA---LERN-LYLTLQLME--MGANLLLALNKMDLAKSLG----------IE-IDVDKLEKILGV- 143 (188)
T ss_dssp HHHCCSEEEEEEEGGG---HHHH-HHHHHHHHT--TTCCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-
T ss_pred hccCCCEEEEEecchh---HHHH-HHHHHHHHh--cCCCEEEEEEhhhcccccc----------ch-HHHHHHHHHhCC-
Confidence 3 5999999999875 4444 566666655 4789999999999976543 22 356778888887
Q ss_pred EEEEecccCccCC
Q 030961 156 YYIECSSKTQQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~~~~i 168 (168)
+++++||++|+||
T Consensus 144 ~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 144 KVVPLSAAKKMGI 156 (188)
T ss_dssp CEEECBGGGTBSH
T ss_pred CeEEEEecCCCCH
Confidence 8999999999885
No 114
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.93 E-value=2.3e-26 Score=158.36 Aligned_cols=146 Identities=18% Similarity=0.158 Sum_probs=96.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeE-EEEECCeEEEEEEEeCCC----------Cccccccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAG----------QEDYNRLR 73 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g----------~~~~~~~~ 73 (168)
....++|+++|.+|+|||||+++|++..+...+.++.+..... ....++ .+.+||||| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 4568999999999999999999999987655555555444322 233333 578899999 66666666
Q ss_pred cccccCC---cEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCccc--HHHHHH-
Q 030961 74 PLSYRGA---DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT--TAQGEE- 147 (168)
Q Consensus 74 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~- 147 (168)
..+++.+ +++++|+|++++.++... .+...+.. .+.|+++|+||+|+...+. +. .+++.+
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~ 162 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKGK----------WDKHAKVVRQT 162 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGG----------HHHHHHHHHHH
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChHH----------HHHHHHHHHHH
Confidence 7776666 999999999998777653 33344433 4789999999999986643 21 123333
Q ss_pred HHHHhCCcEEEEecccCccCC
Q 030961 148 LRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 148 ~~~~~~~~~~~~~Sa~~~~~i 168 (168)
++...+. +++++||++|+||
T Consensus 163 ~~~~~~~-~~~~~Sa~~~~gv 182 (195)
T 1svi_A 163 LNIDPED-ELILFSSETKKGK 182 (195)
T ss_dssp HTCCTTS-EEEECCTTTCTTH
T ss_pred HcccCCC-ceEEEEccCCCCH
Confidence 2222344 8999999999985
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=1.9e-25 Score=160.59 Aligned_cols=143 Identities=20% Similarity=0.144 Sum_probs=105.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccc------cccc-
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLR------PLSY- 77 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~~- 77 (168)
.+.++|+++|++|+|||||+++|.+..+.....+..+.... ..+... ...+.+|||||+..+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 46789999999999999999999987764433443333322 223333 3678889999998876543 3444
Q ss_pred -cCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcE
Q 030961 78 -RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (168)
Q Consensus 78 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (168)
..+|++++|+|+++.++.. .|...+.. .+.|+++++||+|+...+. +. .++..++..+++ +
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~----~~~~~l~~--~~~pvilv~NK~Dl~~~~~----------i~-~~~~~l~~~lg~-~ 142 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL----YLLLEILE--MEKKVILAMTAIDEAKKTG----------MK-IDRYELQKHLGI-P 142 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH----HHHHHHHT--TTCCEEEEEECHHHHHHTT----------CC-BCHHHHHHHHCS-C
T ss_pred hcCCCEEEEEeCCCchhhHH----HHHHHHHh--cCCCEEEEEECcCCCCccc----------hH-HHHHHHHHHcCC-C
Confidence 5899999999999876543 34455544 3699999999999976543 22 246788888998 9
Q ss_pred EEEecccCccCC
Q 030961 157 YIECSSKTQQVC 168 (168)
Q Consensus 157 ~~~~Sa~~~~~i 168 (168)
++++||++|.||
T Consensus 143 vi~~SA~~g~gi 154 (258)
T 3a1s_A 143 VVFTSSVTGEGL 154 (258)
T ss_dssp EEECCTTTCTTH
T ss_pred EEEEEeeCCcCH
Confidence 999999999985
No 116
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=1.9e-25 Score=163.66 Aligned_cols=151 Identities=19% Similarity=0.130 Sum_probs=101.2
Q ss_pred CCCCcceeeEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeceeEEEEECCeEEEEEEEeCCCCcc--------ccc
Q 030961 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQED--------YNR 71 (168)
Q Consensus 1 m~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~ 71 (168)
|+.. -+..+|+++|.+|+|||||+|+|++.++... ..+..+.. ...........++.+|||||... +..
T Consensus 1 m~~~-~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~-~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~ 78 (301)
T 1wf3_A 1 MAEK-TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRK-RLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQ 78 (301)
T ss_dssp --CC-CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCS-CEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHH
T ss_pred CCCC-ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeE-EEEEEEEeCCcEEEEecCccccchhhHHHHHHHH
Confidence 5443 4556899999999999999999999887532 22222212 11112223356788899999876 334
Q ss_pred cccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHH
Q 030961 72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151 (168)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (168)
....+++.+|++++|+|++++.+... ..+...+.+..++.|+++|+||+|+..... ...+.++.+
T Consensus 79 ~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~----------~~~~~~~~~--- 143 (301)
T 1wf3_A 79 EVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE----------EAMKAYHEL--- 143 (301)
T ss_dssp HHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH----------HHHHHHHHT---
T ss_pred HHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH----------HHHHHHHHh---
Confidence 45567889999999999988765543 444566666545799999999999975431 012222222
Q ss_pred hCCcEEEEecccCccCC
Q 030961 152 IGASYYIECSSKTQQVC 168 (168)
Q Consensus 152 ~~~~~~~~~Sa~~~~~i 168 (168)
.+..+++++||++|.|+
T Consensus 144 ~~~~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 144 LPEAEPRMLSALDERQV 160 (301)
T ss_dssp STTSEEEECCTTCHHHH
T ss_pred cCcCcEEEEeCCCCCCH
Confidence 34457999999998874
No 117
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.93 E-value=6.1e-26 Score=151.51 Aligned_cols=139 Identities=23% Similarity=0.188 Sum_probs=94.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcee-eceeEEEEECCeEEEEEEEeCCCCccc-------cccccccccC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDY-------NRLRPLSYRG 79 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~ 79 (168)
+||+++|++|+|||||+++|.+..+. ....+..+ .........++. .+.+|||||.+.+ ...+...++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988743 12222222 223344555554 6778999998873 3344556789
Q ss_pred CcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEE
Q 030961 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 159 (168)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (168)
+|++++|+|++++.+... ..+...+.+ .+.|+++|+||+|+..... ++.+++ .++..++++
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~--------------~~~~~~-~~~~~~~~~ 140 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHEL--------------YLGPLY-GLGFGDPIP 140 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGGG--------------GCGGGG-GGSSCSCEE
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccchH--------------hHHHHH-hCCCCCeEE
Confidence 999999999998654433 233333433 4689999999999976521 223344 466657999
Q ss_pred ecccCccCC
Q 030961 160 CSSKTQQVC 168 (168)
Q Consensus 160 ~Sa~~~~~i 168 (168)
+||++|+||
T Consensus 141 ~Sa~~~~gv 149 (161)
T 2dyk_A 141 TSSEHARGL 149 (161)
T ss_dssp CBTTTTBSH
T ss_pred EecccCCCh
Confidence 999999985
No 118
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=1.2e-25 Score=162.57 Aligned_cols=142 Identities=15% Similarity=0.154 Sum_probs=104.5
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccc------ccccccc--
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR------LRPLSYR-- 78 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~-- 78 (168)
..++|+++|++|||||||+++|.+........+..+.. .+...+.. ...+.+|||||++.+.. +...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~-~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE-RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS-CEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE-EEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 35899999999999999999999876544434433222 23334454 66788999999988763 3444554
Q ss_pred CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
.+|++++|+|+++.++.. .|..++.+ .+.|+++++||+|+...+. +. .+...++..+++ +++
T Consensus 80 ~~d~vi~V~D~t~~e~~~----~~~~~l~~--~~~p~ilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~-~vi 141 (272)
T 3b1v_A 80 RADSILNVVDATNLERNL----YLTTQLIE--TGIPVTIALNMIDVLDGQG----------KK-INVDKLSYHLGV-PVV 141 (272)
T ss_dssp CCSEEEEEEEGGGHHHHH----HHHHHHHH--TCSCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-CEE
T ss_pred CCCEEEEEecCCchHhHH----HHHHHHHh--cCCCEEEEEEChhhCCcCC----------cH-HHHHHHHHHcCC-CEE
Confidence 699999999998866543 45555544 4799999999999975533 22 356778888898 899
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|+||
T Consensus 142 ~~SA~~g~gi 151 (272)
T 3b1v_A 142 ATSALKQTGV 151 (272)
T ss_dssp ECBTTTTBSH
T ss_pred EEEccCCCCH
Confidence 9999999985
No 119
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.92 E-value=3.2e-26 Score=156.84 Aligned_cols=142 Identities=18% Similarity=0.219 Sum_probs=103.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCC-----------Cccccccccccc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG-----------QEDYNRLRPLSY 77 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~~ 77 (168)
+||+++|.+|+|||||+++|.+..+...+.++.+... ...... .+.+||||| ++.+..++..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~-~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI-IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC-EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee-EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999888766666543322 222333 678899999 556666666666
Q ss_pred cC-CcEEEEEEeCCChhHHHHHHHhHHHH--------Hch-hC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHH
Q 030961 78 RG-ADVFVLAFSLVSRASYENVLKKWIPE--------LQH-YS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE 146 (168)
Q Consensus 78 ~~-~~~~i~v~d~~~~~s~~~~~~~~~~~--------l~~-~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
+. ++++++|+++.+..++..+...|... +.. .. .+.|+++|+||+|+...+ .++++
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~~ 143 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-------------QEVIN 143 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-------------HHHHH
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-------------HHHHH
Confidence 66 77777777777777777654556542 111 11 579999999999997652 45678
Q ss_pred HHHHHhCCc------EEEEecccCccCC
Q 030961 147 ELRKQIGAS------YYIECSSKTQQVC 168 (168)
Q Consensus 147 ~~~~~~~~~------~~~~~Sa~~~~~i 168 (168)
.++..++.. +++++||++|+||
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 171 (190)
T 2cxx_A 144 FLAEKFEVPLSEIDKVFIPISAKFGDNI 171 (190)
T ss_dssp HHHHHHTCCGGGHHHHEEECCTTTCTTH
T ss_pred HHHHHhhhhhhccCCcEEEEecCCCCCH
Confidence 888888872 3799999999985
No 120
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.92 E-value=1.1e-25 Score=152.67 Aligned_cols=140 Identities=20% Similarity=0.229 Sum_probs=99.1
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccc--------ccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS 76 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 76 (168)
+.++|+++|.+|+|||||+++|.+..+. ..+.++....+...+.+++.. +.+|||||++.+.... ..+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4689999999999999999999987642 222233222335566677644 6789999987643211 134
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCc
Q 030961 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (168)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (168)
++.+|++++|+|++++.++.. ..|+..+.+.. .++|+++|+||+|+..... . ++...+.
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----------~-------~~~~~~~- 140 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETL----------G-------MSEVNGH- 140 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC----------E-------EEEETTE-
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchh----------h-------hhhccCC-
Confidence 789999999999999888764 46666666654 4799999999999964321 0 0111344
Q ss_pred EEEEecccCccCC
Q 030961 156 YYIECSSKTQQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~~~~i 168 (168)
+++++||++|+||
T Consensus 141 ~~~~~SA~~g~gv 153 (172)
T 2gj8_A 141 ALIRLSARTGEGV 153 (172)
T ss_dssp EEEECCTTTCTTH
T ss_pred ceEEEeCCCCCCH
Confidence 8999999999985
No 121
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=1.3e-25 Score=161.13 Aligned_cols=140 Identities=16% Similarity=0.177 Sum_probs=103.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccc----------cccccc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR----------LRPLSY 77 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~ 77 (168)
.+|+++|.+|||||||+|+|.+..+.....+..+.+. ...+..++. .+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999998875444445444443 334555654 677899999988764 344455
Q ss_pred --cCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCc
Q 030961 78 --RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (168)
Q Consensus 78 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (168)
..+|++++|+|+++.++...+ ...+.. .+.|+++++||+|+...+. +. .....++..+++
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l----~~~l~~--~~~pvilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~- 141 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYL----TSQLFE--LGKPVVVALNMMDIAEHRG----------IS-IDTEKLESLLGC- 141 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHH----HHHHTT--SCSCEEEEEECHHHHHHTT----------CE-ECHHHHHHHHCS-
T ss_pred hhCCCCEEEEEeeCCCchhHHHH----HHHHHH--cCCCEEEEEEChhcCCcCC----------cH-HHHHHHHHHcCC-
Confidence 789999999999986655443 334444 3689999999999976543 11 124557788898
Q ss_pred EEEEecccCccCC
Q 030961 156 YYIECSSKTQQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~~~~i 168 (168)
+++++||++|.||
T Consensus 142 ~vi~~SA~~g~gi 154 (256)
T 3iby_A 142 SVIPIQAHKNIGI 154 (256)
T ss_dssp CEEECBGGGTBSH
T ss_pred CEEEEECCCCCCH
Confidence 9999999999985
No 122
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.92 E-value=5.7e-25 Score=151.08 Aligned_cols=148 Identities=17% Similarity=0.116 Sum_probs=101.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEE-EECCeEEEEEEEeCCC----------Cccccccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-VAEGTTVNLGLWDTAG----------QEDYNRLR 73 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g----------~~~~~~~~ 73 (168)
....+||+++|.+|+|||||+++|++..+ ..+.++.+....... ..+ ..+.+||||| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVN---SKYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEET---TTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEEC---CcEEEEECCCCccccCChhhHHHHHHHH
Confidence 45678999999999999999999999874 333344433332222 222 2466899999 55566666
Q ss_pred cccccCC---cEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH
Q 030961 74 PLSYRGA---DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 150 (168)
Q Consensus 74 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (168)
..+++.+ +++++|+|++++.+.... .+...+.. .+.|+++|+||+|+..... .....++++.++.
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~~--------~~~~~~~~~~~~~ 163 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS--LNIPFTIVLTKMDKVKMSE--------RAKKLEEHRKVFS 163 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGG--------HHHHHHHHHHHHH
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH--cCCCEEEEEEChhcCChHH--------HHHHHHHHHHHHh
Confidence 6666554 999999998876444332 22333333 2689999999999975432 1145566777777
Q ss_pred HhCCcEEEEecccCccCC
Q 030961 151 QIGASYYIECSSKTQQVC 168 (168)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~i 168 (168)
..+..+++++||++|+||
T Consensus 164 ~~~~~~~~~~Sa~~~~gv 181 (195)
T 3pqc_A 164 KYGEYTIIPTSSVTGEGI 181 (195)
T ss_dssp SSCCSCEEECCTTTCTTH
T ss_pred hcCCCceEEEecCCCCCH
Confidence 766558999999999985
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.91 E-value=6.5e-25 Score=159.07 Aligned_cols=142 Identities=15% Similarity=0.167 Sum_probs=101.3
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCcccccccc----------c
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRP----------L 75 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~----------~ 75 (168)
+.++|+++|.+|+|||||+|+|.+..+.....+..+.+. ...+...+. .+.+|||||...+..... .
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHH
Confidence 368999999999999999999999875444444444333 334444443 566799999988763221 1
Q ss_pred c--ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhC
Q 030961 76 S--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (168)
Q Consensus 76 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (168)
+ ...+|++++|+|+++.++... |...+... ++|+++|+||+|+...+. + ......++..++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~----~~~~l~~~--~~p~ivv~NK~Dl~~~~~----------~-~~~~~~l~~~lg 142 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLY----LTLQLLEL--GIPCIVALNMLDIAEKQN----------I-RIEIDALSARLG 142 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHH----HHHHHHHH--TCCEEEEEECHHHHHHTT----------E-EECHHHHHHHHT
T ss_pred HHhhcCCCEEEEEecCCChHHHHH----HHHHHHhc--CCCEEEEEECccchhhhh----------H-HHHHHHHHHhcC
Confidence 2 268999999999988665544 33334332 689999999999976543 1 123567778889
Q ss_pred CcEEEEecccCccCC
Q 030961 154 ASYYIECSSKTQQVC 168 (168)
Q Consensus 154 ~~~~~~~Sa~~~~~i 168 (168)
+ +++++||++|+||
T Consensus 143 ~-~~i~~SA~~g~gi 156 (274)
T 3i8s_A 143 C-PVIPLVSTRGRGI 156 (274)
T ss_dssp S-CEEECCCGGGHHH
T ss_pred C-CEEEEEcCCCCCH
Confidence 8 8999999999875
No 124
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.91 E-value=1.6e-24 Score=152.19 Aligned_cols=152 Identities=12% Similarity=0.001 Sum_probs=98.4
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEEC-CeEEEEEEEeCCCCc----------ccccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAE-GTTVNLGLWDTAGQE----------DYNRL 72 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~g~~----------~~~~~ 72 (168)
....++|+++|.+|+|||||+++|++.........+.+... .....+. .....+.+|||||.. .+..+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 34678999999999999999999998863222222222222 1222333 344678889999943 23344
Q ss_pred ccccccC---CcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHH
Q 030961 73 RPLSYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 149 (168)
Q Consensus 73 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (168)
...+++. +|++++|+|++++.+... ..++..+.. .+.|+++|+||+|+....... ...++..+..
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~--------~~~~~~~~~l 173 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAP--TGKPIHSLLTKCDKLTRQESI--------NALRATQKSL 173 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGG--GCCCEEEEEECGGGSCHHHHH--------HHHHHHHHHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHh--cCCCEEEEEeccccCChhhHH--------HHHHHHHHHH
Confidence 4444444 788999999987654333 456666665 468999999999997654300 1122233333
Q ss_pred HHh------CCcEEEEecccCccCC
Q 030961 150 KQI------GASYYIECSSKTQQVC 168 (168)
Q Consensus 150 ~~~------~~~~~~~~Sa~~~~~i 168 (168)
..+ ...+++++||++|.||
T Consensus 174 ~~~~~~~~~~~~~~~~~SA~~g~gv 198 (223)
T 4dhe_A 174 DAYRDAGYAGKLTVQLFSALKRTGL 198 (223)
T ss_dssp HHHHHHTCCSCEEEEEEBTTTTBSH
T ss_pred HhhhhcccCCCCeEEEeecCCCcCH
Confidence 332 4458999999999985
No 125
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=3.4e-24 Score=155.08 Aligned_cols=143 Identities=20% Similarity=0.134 Sum_probs=103.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccc------cccccc--
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR------LRPLSY-- 77 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~-- 77 (168)
+.++|+++|++|+|||||+++|.+..+.....++.+.+. ...+...+. .+.+|||||...+.. +...++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 368999999999999999999998876444445444443 234445554 477899999988766 344444
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEE
Q 030961 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 157 (168)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (168)
.++|++++|+|+++.+.. ..|...+... ...|+++++||+|+...+. ... +...+++.+++ ++
T Consensus 80 ~~~d~vi~v~D~~~~~~~----~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~----------~~~-~~~~l~~~lg~-~~ 142 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMRN----LFLTLELFEM-EVKNIILVLNKFDLLKKKG----------AKI-DIKKMRKELGV-PV 142 (271)
T ss_dssp TCCSEEEEEEEGGGHHHH----HHHHHHHHHT-TCCSEEEEEECHHHHHHHT----------CCC-CHHHHHHHHSS-CE
T ss_pred cCCcEEEEEecCCcchhh----HHHHHHHHhc-CCCCEEEEEEChhcCcccc----------cHH-HHHHHHHHcCC-cE
Confidence 679999999999886432 2333333332 2389999999999876543 221 26778888898 89
Q ss_pred EEecccCccCC
Q 030961 158 IECSSKTQQVC 168 (168)
Q Consensus 158 ~~~Sa~~~~~i 168 (168)
+++||++|.||
T Consensus 143 ~~~Sa~~g~gi 153 (271)
T 3k53_A 143 IPTNAKKGEGV 153 (271)
T ss_dssp EECBGGGTBTH
T ss_pred EEEEeCCCCCH
Confidence 99999999985
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.90 E-value=1.4e-23 Score=162.07 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=86.0
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccc--------ccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS 76 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 76 (168)
..++|+++|.+|+|||||+|+|.+... .....++..+.....+.+++ +.+.+|||||...+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 468999999999999999999998753 22222333333345566666 467789999987765443 336
Q ss_pred ccCCcEEEEEEeCCChhHHHHH--HHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCC
Q 030961 77 YRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 154 (168)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~--~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (168)
++.+|++++|+|++++.++... ...|+..+. +.|+++|+||+|+..... .. .+.+.....
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~----~~piIvV~NK~Dl~~~~~----------~~---~~~l~~~~~- 371 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP----AAKFLTVANKLDRAANAD----------AL---IRAIADGTG- 371 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT----TSEEEEEEECTTSCTTTH----------HH---HHHHHHHHT-
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC----CCCEEEEEECcCCCCccc----------hh---HHHHHhcCC-
Confidence 7899999999999998877432 134444443 689999999999976643 21 133444322
Q ss_pred cEEEEecccCccCC
Q 030961 155 SYYIECSSKTQQVC 168 (168)
Q Consensus 155 ~~~~~~Sa~~~~~i 168 (168)
.+++++||++|+||
T Consensus 372 ~~~i~vSAktg~GI 385 (476)
T 3gee_A 372 TEVIGISALNGDGI 385 (476)
T ss_dssp SCEEECBTTTTBSH
T ss_pred CceEEEEECCCCCH
Confidence 48999999999985
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=6.4e-24 Score=162.90 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=100.3
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeceeEEEEECCeEEEEEEEeCCCCc----------ccccccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE----------DYNRLRP 74 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~ 74 (168)
..+||+++|.+|+|||||+|+|++..+. ..+.++..+.....+..++.. +.+|||||+. .|..+..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHHH
Confidence 5689999999999999999999987653 232333333334556666654 6779999973 3322222
Q ss_pred -ccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHH-HHHHHHh
Q 030961 75 -LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG-EELRKQI 152 (168)
Q Consensus 75 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 152 (168)
.+++.+|++++|+|++++.+++.. .|...+.. .+.|+++++||+|+...+. ...++. ..+.+.+
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~l 317 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHE--AGKAVVIVVNKWDAVDKDE----------STMKEFEENIRDHF 317 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSCCCT----------THHHHHHHHHHHHC
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHH--cCCcEEEEEECccCCCcch----------HHHHHHHHHHHHhc
Confidence 356789999999999999888774 57766655 5799999999999976543 333332 2222222
Q ss_pred ---CCcEEEEecccCccCC
Q 030961 153 ---GASYYIECSSKTQQVC 168 (168)
Q Consensus 153 ---~~~~~~~~Sa~~~~~i 168 (168)
+..+++++||++|.||
T Consensus 318 ~~~~~~~~~~~SA~tg~~v 336 (436)
T 2hjg_A 318 QFLDYAPILFMSALTKKRI 336 (436)
T ss_dssp GGGTTSCEEECCTTTCTTG
T ss_pred ccCCCCCEEEEecccCCCH
Confidence 2348999999999986
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=1.2e-23 Score=162.29 Aligned_cols=147 Identities=20% Similarity=0.208 Sum_probs=105.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeceeEEEEECCeEEEEEEEeCCC----------Cccccccc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG----------QEDYNRLR 73 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~ 73 (168)
...++|+++|.+++|||||+++|.+... ...+.++..+.....+..++. .+.+||||| ++.|..+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4578999999999999999999997642 223333333333556666665 677899999 56655554
Q ss_pred cc-cccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHh
Q 030961 74 PL-SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 152 (168)
Q Consensus 74 ~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (168)
.. +++.+|++++|+|++++.+... ..|...+.. .+.|+++|+||+|+...+. ...+++.+.++..
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~ 336 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHE--AGKAVVIVVNKWDAVDKDE----------STMKEFEENIRDH 336 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH--TTCEEEEEEECGGGSCCCS----------SHHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHH--cCCCEEEEEEChhcCCCch----------HHHHHHHHHHHHh
Confidence 43 6788999999999988655433 466666665 5699999999999986654 5566666666554
Q ss_pred ----CCcEEEEecccCccCC
Q 030961 153 ----GASYYIECSSKTQQVC 168 (168)
Q Consensus 153 ----~~~~~~~~Sa~~~~~i 168 (168)
+..+++++||++|+||
T Consensus 337 ~~~~~~~~~~~~SA~~g~gv 356 (456)
T 4dcu_A 337 FQFLDYAPILFMSALTKKRI 356 (456)
T ss_dssp CGGGTTSCEEECCTTTCTTG
T ss_pred cccCCCCCEEEEcCCCCcCH
Confidence 2348999999999986
No 129
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.89 E-value=5.9e-23 Score=150.60 Aligned_cols=148 Identities=16% Similarity=0.070 Sum_probs=101.4
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeceeEEEEECCeEEEEEEEeCCCCc---------ccccccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE---------DYNRLRP 74 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~ 74 (168)
..+..+|+++|++|+|||||+|+|++..+.. ...+..+ .......+.....++.+|||||.. .+.....
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tT-r~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTT-RHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCC-SSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcc-eeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 4456689999999999999999999987532 1122111 111111222234578889999987 3445567
Q ss_pred ccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCC
Q 030961 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 154 (168)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (168)
..++.+|++++|+|+++ .+ .....+...+.. .+.|+++++||+|+...+. ...+....+...+++
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~----------~~~~~l~~l~~~~~~ 148 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WT--PDDEMVLNKLRE--GKAPVILAVNKVDNVQEKA----------DLLPHLQFLASQMNF 148 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CC--HHHHHHHHHHHS--SSSCEEEEEESTTTCCCHH----------HHHHHHHHHHTTSCC
T ss_pred HHHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHh--cCCCEEEEEECcccCccHH----------HHHHHHHHHHHhcCc
Confidence 78899999999999977 33 221333344433 4689999999999976322 334556667766776
Q ss_pred cEEEEecccCccCC
Q 030961 155 SYYIECSSKTQQVC 168 (168)
Q Consensus 155 ~~~~~~Sa~~~~~i 168 (168)
..++++||++|.|+
T Consensus 149 ~~~i~iSA~~g~~v 162 (301)
T 1ega_A 149 LDIVPISAETGLNV 162 (301)
T ss_dssp SEEEECCTTTTTTH
T ss_pred CceEEEECCCCCCH
Confidence 57999999999874
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.89 E-value=6.3e-24 Score=161.63 Aligned_cols=144 Identities=17% Similarity=0.146 Sum_probs=102.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeec-eeEEEEECCeEEEEEEEeCCCCccccccccc-------
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDN-FSANVVAEGTTVNLGLWDTAGQEDYNRLRPL------- 75 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~------- 75 (168)
....++|+++|..++|||||+++|++..+. ....+..+.. ..+.+...+.. .+.+|||||++.+..+...
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHH
Confidence 456889999999999999999999988763 2222222222 34455555542 6788999999887765433
Q ss_pred cccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCc
Q 030961 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 155 (168)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (168)
.+..+|++++|+|++..... ..|+..+.+. +.|+++|+||+|+...+. . +.++.++..+++
T Consensus 110 ~l~~aD~vllVvD~~~~~~~----~~~l~~l~~~--~~piIvV~NK~Dl~~~~~----------~--~~~~~l~~~~g~- 170 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPTPYE----DDVVNLFKEM--EIPFVVVVNKIDVLGEKA----------E--ELKGLYESRYEA- 170 (423)
T ss_dssp HHTSCSEEEEECSSSCCHHH----HHHHHHHHHT--TCCEEEECCCCTTTTCCC----------T--HHHHHSSCCTTC-
T ss_pred HHhcCCEEEEEEeCCChHHH----HHHHHHHHhc--CCCEEEEEeCcCCCCccH----------H--HHHHHHHHHcCC-
Confidence 67889999999998333222 5677777664 799999999999987653 2 566777777887
Q ss_pred EEEEecccCccCC
Q 030961 156 YYIECSSKTQQVC 168 (168)
Q Consensus 156 ~~~~~Sa~~~~~i 168 (168)
+++++||++|.||
T Consensus 171 ~v~~vSAktg~gI 183 (423)
T 3qq5_A 171 KVLLVSALQKKGF 183 (423)
T ss_dssp CCCCCSSCCTTST
T ss_pred CEEEEECCCCCCH
Confidence 8999999999986
No 131
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=6.4e-23 Score=140.92 Aligned_cols=114 Identities=12% Similarity=0.155 Sum_probs=86.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC---CCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccC---
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPT---DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG--- 79 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~--- 79 (168)
.+.++|+++|++|||||||+++|.+..+.. ...++.+. +...+.+.+|||||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee--------eecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 467899999999999999999999887643 12222222 1134567889999999998887777766
Q ss_pred -CcEEEEEEeCC-ChhHHHHHHHhHHHHHchh-----CCCCcEEEEeeCCcccccc
Q 030961 80 -ADVFVLAFSLV-SRASYENVLKKWIPELQHY-----SPGVPVVLVGTKLDLREDK 128 (168)
Q Consensus 80 -~~~~i~v~d~~-~~~s~~~~~~~~~~~l~~~-----~~~~p~ivv~nK~D~~~~~ 128 (168)
+|++++|+|++ ++.++... ..|+..+... .++.|+++|+||+|+....
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 89999887 5666555432 2479999999999998664
No 132
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.88 E-value=5e-22 Score=148.86 Aligned_cols=147 Identities=17% Similarity=0.155 Sum_probs=103.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCcccccc---------ccc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRL---------RPL 75 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~---------~~~ 75 (168)
...++++++|.+|+|||||+++|.+........+..+.... ..+... ...+.+|||||....... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 35689999999999999999999987642211111111111 122222 356788999998553211 112
Q ss_pred cccCCcEEEEEEeCCChh--HHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhC
Q 030961 76 SYRGADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (168)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (168)
....+|++++|+|++++. ++... ..|+..+.....+.|+++|+||+|+..... .+++..++...+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~~------------~~~~~~~~~~~~ 309 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEEN------------IKRLEKFVKEKG 309 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHHH------------HHHHHHHHHHTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChHH------------HHHHHHHHHhcC
Confidence 334699999999998877 66765 678777776555799999999999976533 245666676777
Q ss_pred CcEEEEecccCccCC
Q 030961 154 ASYYIECSSKTQQVC 168 (168)
Q Consensus 154 ~~~~~~~Sa~~~~~i 168 (168)
+ +++++||++|+||
T Consensus 310 ~-~~~~iSA~~g~gi 323 (357)
T 2e87_A 310 L-NPIKISALKGTGI 323 (357)
T ss_dssp C-CCEECBTTTTBTH
T ss_pred C-CeEEEeCCCCcCH
Confidence 6 8999999999985
No 133
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=2e-22 Score=154.72 Aligned_cols=140 Identities=21% Similarity=0.187 Sum_probs=91.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcee-eceeEEEEECCeEEEEEEEeCCCCccc---------cccccccc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDY---------NRLRPLSY 77 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~ 77 (168)
.+|+++|.||||||||+|+|++.+.. ....+..+ +.....+..++.. +.+|||||.+.. ...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999988743 22233333 3334556666654 677999997642 23345568
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHH-HHHHHHhCCcE
Q 030961 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG-EELRKQIGASY 156 (168)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 156 (168)
+++|++++|+|+.++.+... ..+...+.+ .+.|+++|+||+|+... . ..+. .++. .+++.+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~~------------~-~~~~~~~~~-~lg~~~ 141 (439)
T 1mky_A 80 READLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLRE------------F-EREVKPELY-SLGFGE 141 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHHH------------H-HHHTHHHHG-GGSSCS
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCccc------------c-HHHHHHHHH-hcCCCC
Confidence 89999999999988665443 223333333 36899999999998532 1 1122 3333 456546
Q ss_pred EEEecccCccCC
Q 030961 157 YIECSSKTQQVC 168 (168)
Q Consensus 157 ~~~~Sa~~~~~i 168 (168)
++++||++|.||
T Consensus 142 ~~~iSA~~g~gv 153 (439)
T 1mky_A 142 PIPVSAEHNINL 153 (439)
T ss_dssp CEECBTTTTBSH
T ss_pred EEEEeccCCCCH
Confidence 899999999985
No 134
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.87 E-value=2.3e-22 Score=155.98 Aligned_cols=156 Identities=12% Similarity=0.020 Sum_probs=97.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCC----------------------CCC-----ceeece-eEEEEECCeE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKF--PTD----------------------YIP-----TVFDNF-SANVVAEGTT 55 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~--~~~----------------------~~~-----~~~~~~-~~~~~~~~~~ 55 (168)
...+||+++|.+++|||||+++|++..- ... .+. ..+... .....++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 3578999999999999999999976511 000 000 001111 1122233445
Q ss_pred EEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHH-----HHHhHHHHHchhCCCCcEEEEeeCCcccccchh
Q 030961 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN-----VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 130 (168)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~ 130 (168)
..+.+|||||++.|...+...++.+|++++|+|++++.++.. ...+....+.. ....|+++++||+|+...+..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGGTTCHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECcCcccchHH
Confidence 678899999999999888889999999999999998754321 11222232322 223579999999999764320
Q ss_pred hhcCCCCCcccHHHHHHHHHHhCC----cEEEEecccCccCC
Q 030961 131 LADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQVC 168 (168)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i 168 (168)
.. ....++...+...++. .+++++||++|+||
T Consensus 190 ~~------~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi 225 (483)
T 3p26_A 190 RF------EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGV 225 (483)
T ss_dssp HH------HHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTS
T ss_pred HH------HHHHHHHHHHHHHcCCCcccceEEEEeeecCCCc
Confidence 00 0123334444444443 48999999999986
No 135
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.87 E-value=7.6e-23 Score=152.03 Aligned_cols=143 Identities=21% Similarity=0.215 Sum_probs=102.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeeceeEEEEECCeEEEEEEEeCCCCc----ccccccccccc---C
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYI--PTVFDNFSANVVAEGTTVNLGLWDTAGQE----DYNRLRPLSYR---G 79 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~---~ 79 (168)
.+|+++|.++||||||+++|++.+...... .|.... ...+.+++ ...+.+|||||.. .+..+...+++ .
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~-~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPN-LGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCC-EEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCce-EEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 368899999999999999999876422111 122111 11233333 2467889999953 34445455554 4
Q ss_pred CcEEEEEEeCCC---hhHHHHHHHhHHHHHchhC---CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhC
Q 030961 80 ADVFVLAFSLVS---RASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 153 (168)
Q Consensus 80 ~~~~i~v~d~~~---~~s~~~~~~~~~~~l~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (168)
++++++|+|+++ +.+++.. ..|..++..+. .+.|+++|+||+|+.... +..++++..++
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--------------e~~~~l~~~l~ 301 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEAA--------------ENLEAFKEKLT 301 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--------------HHHHHHHHHCC
T ss_pred ccEEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--------------HHHHHHHHHhh
Confidence 999999999998 7888887 78888888764 479999999999996432 34566667666
Q ss_pred C-cEEEEecccCccCC
Q 030961 154 A-SYYIECSSKTQQVC 168 (168)
Q Consensus 154 ~-~~~~~~Sa~~~~~i 168 (168)
. .+++++||++++||
T Consensus 302 ~~~~v~~iSA~tg~gi 317 (342)
T 1lnz_A 302 DDYPVFPISAVTREGL 317 (342)
T ss_dssp SCCCBCCCSSCCSSTT
T ss_pred cCCCEEEEECCCCcCH
Confidence 2 37899999999986
No 136
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=3.2e-22 Score=154.58 Aligned_cols=139 Identities=22% Similarity=0.212 Sum_probs=99.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeceeEEEEECCeEEEEEEEeCCCCc-cccccc--------ccc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE-DYNRLR--------PLS 76 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~~~--------~~~ 76 (168)
.++|+++|.||+|||||+|+|.+..+ ...+..|..+.....+.+++. .+.+|||||.. .+.... ..+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 48999999999999999999998753 333333333334556667664 57789999987 654322 245
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcE
Q 030961 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (168)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (168)
++.+|++++|+|++++.+++.. .+++.+ .+.|+++|+||+|+... +..++...++. .+. +
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~--~il~~l----~~~piivV~NK~DL~~~------------~~~~~~~~~~~-~~~-~ 380 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEK------------INEEEIKNKLG-TDR-H 380 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCC------------CCHHHHHHHHT-CST-T
T ss_pred hhcccEEEEEecCCCCCCHHHH--HHHHHh----cCCCEEEEEECcccccc------------cCHHHHHHHhc-CCC-c
Confidence 6789999999999998877653 343443 36899999999999643 23344444432 334 7
Q ss_pred EEEecccCccCC
Q 030961 157 YIECSSKTQQVC 168 (168)
Q Consensus 157 ~~~~Sa~~~~~i 168 (168)
++++||++|+||
T Consensus 381 ~i~iSAktg~Gi 392 (482)
T 1xzp_A 381 MVKISALKGEGL 392 (482)
T ss_dssp EEEEEGGGTCCH
T ss_pred EEEEECCCCCCH
Confidence 899999999985
No 137
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.87 E-value=2.4e-21 Score=147.33 Aligned_cols=155 Identities=14% Similarity=0.011 Sum_probs=103.6
Q ss_pred CcceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCC---Cceeece----eEEEE------------ECCeEEEEEEEeCC
Q 030961 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI---PTVFDNF----SANVV------------AEGTTVNLGLWDTA 64 (168)
Q Consensus 4 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~---~~~~~~~----~~~~~------------~~~~~~~~~i~D~~ 64 (168)
...+.++|+++|++++|||||+++|.+........ .+..... ...+. .......+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 35578999999999999999999998853321100 0000000 00000 01223788999999
Q ss_pred CCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHH
Q 030961 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 144 (168)
Q Consensus 65 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 144 (168)
|++.|...+...+..+|++++|+|++++.++... .+++..+.... ..|+++++||+|+....... ...++
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~--------~~~~~ 153 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGIIG-VKNLIIVQNKVDVVSKEEAL--------SQYRQ 153 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHHT-CCCEEEEEECGGGSCHHHHH--------HHHHH
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHcC-CCCEEEEEECccccchHHHH--------HHHHH
Confidence 9999998888889999999999999988766665 56666665543 35899999999997653200 11223
Q ss_pred HHHHHHHhC--CcEEEEecccCccCC
Q 030961 145 GEELRKQIG--ASYYIECSSKTQQVC 168 (168)
Q Consensus 145 ~~~~~~~~~--~~~~~~~Sa~~~~~i 168 (168)
..++...++ ..+++++||++|+||
T Consensus 154 i~~~l~~~~~~~~~ii~vSA~~g~gi 179 (403)
T 3sjy_A 154 IKQFTKGTWAENVPIIPVSALHKINI 179 (403)
T ss_dssp HHHHHTTSTTTTCCEEECBTTTTBSH
T ss_pred HHHHHHhhCCCCCEEEEEECCCCcCh
Confidence 333332221 237999999999985
No 138
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.86 E-value=3.2e-21 Score=147.94 Aligned_cols=156 Identities=14% Similarity=0.083 Sum_probs=100.6
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCC--CC-----------------------------CCCCceeeceeEEEEECC
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKF--PT-----------------------------DYIPTVFDNFSANVVAEG 53 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~ 53 (168)
....++|+++|++++|||||+++|++..- .. ...+.++.+.. ...+..
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~-~~~~~~ 92 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVG-RAYFET 92 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEe-EEEEec
Confidence 34678999999999999999999965421 00 00111122211 112233
Q ss_pred eEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhH---HH---HHHHhHHHHHchhCCCCc-EEEEeeCCcccc
Q 030961 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS---YE---NVLKKWIPELQHYSPGVP-VVLVGTKLDLRE 126 (168)
Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~l~~~~~~~p-~ivv~nK~D~~~ 126 (168)
....+.+|||||++.|...+...++.+|++++|+|++++.. |. .. .+.+..+.. .++| +++++||+|+..
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt-~e~l~~~~~--~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT-REHAMLAKT--AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH-HHHHHHHHH--cCCCeEEEEeecCCCcc
Confidence 34578899999999998888888999999999999988642 11 11 223333333 3566 999999999964
Q ss_pred cchhhhcCCCCCcccHHHHHHHHHHhCC-----cEEEEecccCccCC
Q 030961 127 DKHYLADHPGLVPVTTAQGEELRKQIGA-----SYYIECSSKTQQVC 168 (168)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i 168 (168)
..... .......++...+...+++ .+++++||++|+||
T Consensus 170 ~~~~~----~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni 212 (439)
T 3j2k_7 170 VNWSN----ERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANL 212 (439)
T ss_pred cchHH----HHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccc
Confidence 21100 0001234455566655553 37999999999986
No 139
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.86 E-value=3.9e-22 Score=148.72 Aligned_cols=112 Identities=13% Similarity=0.145 Sum_probs=85.8
Q ss_pred EEEEEEEeCCCCccccccccccccCCcEEEEEEeCCC----------hhHHHHHHHhHHHHHchhC--CCCcEEEEeeCC
Q 030961 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHYS--PGVPVVLVGTKL 122 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~ 122 (168)
.+.+++||++|++.++..|..+++++++++||||+++ ..++.+. ..|+..+.... .++|++|++||+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcEEEEEECc
Confidence 4678899999999999999999999999999999998 5678887 66777666542 689999999999
Q ss_pred cccccchhh----hcCCC-CCcccHHHHHHHHHH-----------hCCcEEEEecccCccCC
Q 030961 123 DLREDKHYL----ADHPG-LVPVTTAQGEELRKQ-----------IGASYYIECSSKTQQVC 168 (168)
Q Consensus 123 D~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i 168 (168)
|+...+... ...+. ..++..+++..++.. .++ .+++|||++++||
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~etSA~~~~nV 331 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEI-YTHFTCATDTKNV 331 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCE-EEEECCTTCHHHH
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEECcCchhH
Confidence 996543100 00000 113677888888872 344 8899999999875
No 140
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=4.7e-23 Score=158.10 Aligned_cols=141 Identities=18% Similarity=0.109 Sum_probs=88.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCc--------ccccccccccc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE--------DYNRLRPLSYR 78 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~ 78 (168)
.++|+++|.+|||||||+|+|.+.++.. ...+.+.+. .....+......+.+|||||.+ .+...+..+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 3689999999999999999999876532 122222222 1222333334568889999986 45556667788
Q ss_pred CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
++|++++|+|+.++.+... ..+...+.+ .+.|+++|+||+|+..... . ..++. .+++.+++
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~~~----------~----~~~~~-~lg~~~~~ 142 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRA----------N----IYDFY-SLGFGEPY 142 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC---------------C----CCSSG-GGSSCCCE
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccchh----------h----HHHHH-HcCCCCeE
Confidence 9999999999998777654 345555554 5789999999999875421 0 01111 34554789
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++|.|+
T Consensus 143 ~iSA~~g~gv 152 (436)
T 2hjg_A 143 PISGTHGLGL 152 (436)
T ss_dssp ECBTTTTBTH
T ss_pred EEeCcCCCCh
Confidence 9999999985
No 141
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.86 E-value=5.9e-22 Score=147.75 Aligned_cols=114 Identities=13% Similarity=0.112 Sum_probs=82.8
Q ss_pred eEEEEEEEeCCCCccccccccccccCCcEEEEEEeCC----------ChhHHHHHHHhHHHHHchhC--CCCcEEEEeeC
Q 030961 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPELQHYS--PGVPVVLVGTK 121 (168)
Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK 121 (168)
..+.+++|||+|++.++.+|..++++++++++|||++ +..++.+. ..|+..+.... +++|++|++||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEEC
Confidence 5789999999999999999999999999999999998 78899998 67777766542 68999999999
Q ss_pred Ccccccchhhhc------CCCC-----CcccHHHHHHHHHH---------------hCCcEEEEecccCccCC
Q 030961 122 LDLREDKHYLAD------HPGL-----VPVTTAQGEELRKQ---------------IGASYYIECSSKTQQVC 168 (168)
Q Consensus 122 ~D~~~~~~~~~~------~~~~-----~~~~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~~i 168 (168)
+|+..++..... .+.. .+...+++..++.. .....+++|||++++||
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV 332 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLV 332 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhH
Confidence 999654321000 0000 12245777777543 12235689999999875
No 142
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=4.5e-21 Score=147.03 Aligned_cols=154 Identities=14% Similarity=0.100 Sum_probs=101.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCC----------CCCceeece-------------------e-EEEEECC
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKF--PTD----------YIPTVFDNF-------------------S-ANVVAEG 53 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~--~~~----------~~~~~~~~~-------------------~-~~~~~~~ 53 (168)
...++|+++|++++|||||+++|++..- ... ..++.+..+ . .......
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4578999999999999999999986531 110 011111000 0 0111223
Q ss_pred eEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhc
Q 030961 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 133 (168)
Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~ 133 (168)
....+.+|||||++.|...+...+..+|++++|+|++++...+. .+++..+... .-.|+++++||+|+.......
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt--~~~l~~~~~~-~~~~iIvviNK~Dl~~~~~~~-- 176 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASLL-GIKHIVVAINKMDLNGFDERV-- 176 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHHT-TCCEEEEEEECTTTTTSCHHH--
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc-CCCeEEEEEEcCcCCcccHHH--
Confidence 34578899999999998887788999999999999998754333 3444444332 223699999999997532100
Q ss_pred CCCCCcccHHHHHHHHHHhC--C--cEEEEecccCccCC
Q 030961 134 HPGLVPVTTAQGEELRKQIG--A--SYYIECSSKTQQVC 168 (168)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~--~--~~~~~~Sa~~~~~i 168 (168)
.....++...++..++ . .+++++||++|+||
T Consensus 177 ----~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi 211 (434)
T 1zun_B 177 ----FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNV 211 (434)
T ss_dssp ----HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTT
T ss_pred ----HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCc
Confidence 0013456677777777 2 48999999999986
No 143
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.86 E-value=1.8e-23 Score=162.98 Aligned_cols=148 Identities=18% Similarity=0.163 Sum_probs=102.8
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeE-EEEECCeEEEEEEEeCCCCccccccccccccCCcEEEE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (168)
+.++|+++|++++|||||+++|.+..+.....++++..+.. .+..+ ....+.+|||||++.|..++...++.+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 46889999999999999999999876554445555444322 22221 22367789999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHH---HHHh-CCcEEEEec
Q 030961 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL---RKQI-GASYYIECS 161 (168)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~S 161 (168)
|+|++++...... +++..+.. .++|+++++||+|+...+. . ....+...+ +..+ +..+++++|
T Consensus 82 VVDa~dg~~~qt~--e~l~~~~~--~~vPiIVViNKiDl~~~~~--------~-~v~~~l~~~~~~~e~~~~~~~iv~vS 148 (537)
T 3izy_P 82 VVAADDGVMKQTV--ESIQHAKD--AHVPIVLAINKCDKAEADP--------E-KVKKELLAYDVVCEDYGGDVQAVHVS 148 (537)
T ss_dssp ECBSSSCCCHHHH--HHHHHHHT--TTCCEEECCBSGGGTTTSC--------C-SSSSHHHHTTSCCCCSSSSEEECCCC
T ss_pred EEECCCCccHHHH--HHHHHHHH--cCCcEEEEEecccccccch--------H-HHHHHHHhhhhhHHhcCCCceEEEEE
Confidence 9999987665543 33333433 4689999999999975422 0 011111111 1122 124799999
Q ss_pred ccCccCC
Q 030961 162 SKTQQVC 168 (168)
Q Consensus 162 a~~~~~i 168 (168)
|++|+||
T Consensus 149 AktG~GI 155 (537)
T 3izy_P 149 ALTGENM 155 (537)
T ss_dssp SSSSCSS
T ss_pred CCCCCCc
Confidence 9999986
No 144
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.86 E-value=3.5e-22 Score=153.18 Aligned_cols=157 Identities=14% Similarity=0.100 Sum_probs=102.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC--CCCCCC-----------------------------CCceeeceeEEEEECC
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTDY-----------------------------IPTVFDNFSANVVAEG 53 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~ 53 (168)
....++|+++|++++|||||+++|++. .+.... ....+.... ...++.
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~-~~~~~~ 81 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLT-FMRFET 81 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC------------CEEEC
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEee-EEEEec
Confidence 456799999999999999999999864 232110 001111111 112333
Q ss_pred eEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhC-----CC-CcEEEEeeCCccccc
Q 030961 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PG-VPVVLVGTKLDLRED 127 (168)
Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~-~p~ivv~nK~D~~~~ 127 (168)
....+.+|||||++.|...+...++.+|++++|+|+++ .+|+.. ..|..+..++. .+ .|+++++||+|+...
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~-~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAG-MSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHH-HSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccc-cccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence 44678889999999998888888999999999999998 666643 22222222111 23 468999999999763
Q ss_pred chhhhcCCCCCcccHHHHHHHHHHhCC----cEEEEecccCccCC
Q 030961 128 KHYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQVC 168 (168)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i 168 (168)
.... .......++++.++..+++ .+++++||++|+||
T Consensus 160 ~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v 200 (435)
T 1jny_A 160 PYDE----KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNI 200 (435)
T ss_dssp TTCH----HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTT
T ss_pred cccH----HHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccc
Confidence 1000 0001345667788877763 48999999999986
No 145
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.86 E-value=2.2e-21 Score=153.02 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=103.4
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC--CCCCC-----CCCc------eeece---eEEEEE---CCeEEEEEEEeCCC
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD-----YIPT------VFDNF---SANVVA---EGTTVNLGLWDTAG 65 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~--~~~~~-----~~~~------~~~~~---~~~~~~---~~~~~~~~i~D~~g 65 (168)
.+...+|+++|+.++|||||+++|+.. .+... ...+ .+.+. ...+.+ ++..+.+.+|||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 356789999999999999999999862 11110 0000 01111 111211 45678999999999
Q ss_pred CccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHH
Q 030961 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG 145 (168)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
+..|...+...++.+|++++|+|++++.+.+.. ..|..... .++|+++++||+|+...+. .+..
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~---~~ipiIvviNKiDl~~a~~------------~~v~ 146 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE---QDLVIIPVINKIDLPSADV------------DRVK 146 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH---TTCEEEEEEECTTSTTCCH------------HHHH
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---CCCCEEEEEeccCccccCH------------HHHH
Confidence 999988888889999999999999998887775 66665544 3689999999999976531 2334
Q ss_pred HHHHHHhCCc--EEEEecccCccCC
Q 030961 146 EELRKQIGAS--YYIECSSKTQQVC 168 (168)
Q Consensus 146 ~~~~~~~~~~--~~~~~Sa~~~~~i 168 (168)
.++...+++. .++++||++|.||
T Consensus 147 ~el~~~lg~~~~~vi~vSAktg~GI 171 (600)
T 2ywe_A 147 KQIEEVLGLDPEEAILASAKEGIGI 171 (600)
T ss_dssp HHHHHTSCCCGGGCEECBTTTTBSH
T ss_pred HHHHHhhCCCcccEEEEEeecCCCc
Confidence 5566666652 4899999999985
No 146
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.85 E-value=1.6e-21 Score=140.20 Aligned_cols=155 Identities=13% Similarity=0.079 Sum_probs=92.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCc-eeece-eEEEEECCeEEEEEEEeCCCCccccccccc------
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPT-VFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPL------ 75 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~-~~~~~~~~-~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~------ 75 (168)
....++|+++|.+|+|||||+++|++.. +.....++ .+... ......++ ..+.+|||||...+......
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 3467899999999999999999999876 44444443 22222 22334444 46778999998765433222
Q ss_pred -----cccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhC---CCCcEEEEee-CCcccccchhhhcCCCCCcccHHHHH
Q 030961 76 -----SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGT-KLDLREDKHYLADHPGLVPVTTAQGE 146 (168)
Q Consensus 76 -----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~p~ivv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
.++.+|++++|+|+++..... ..+...+.+.. ...|.++++| |+|+....... . ......++++
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~-~---i~~~~~~~~~ 169 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQD---QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMD-Y---MHDSDNKALS 169 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHH-H---HHHCCCHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHH---HHHHHHHHHHhCchhhccEEEEEEcccccCCccHHH-H---HHhcchHHHH
Confidence 567899999999998622222 22223333321 1356666666 99997442100 0 0000013455
Q ss_pred HHHHHhCCcE--E--EEecccCccCC
Q 030961 147 ELRKQIGASY--Y--IECSSKTQQVC 168 (168)
Q Consensus 147 ~~~~~~~~~~--~--~~~Sa~~~~~i 168 (168)
.++...+... + +++||++|.||
T Consensus 170 ~~~~~~~~~~~~~~~~~~SA~~~~gv 195 (260)
T 2xtp_A 170 KLVAACGGRICAFNNRAEGSNQDDQV 195 (260)
T ss_dssp HHHHHTTTCEEECCTTCCHHHHHHHH
T ss_pred HHHHHhCCeEEEecCcccccccHHHH
Confidence 5666665421 3 78999988764
No 147
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=7.5e-21 Score=144.76 Aligned_cols=151 Identities=15% Similarity=0.101 Sum_probs=93.4
Q ss_pred CcceeeEEEEECCCCCCHHHHHHHHhcCC---CCCCCCC--ceeeceeE-EEEE-------------C--C----eEEEE
Q 030961 4 SASRFIKCVTVGDGAVGKTCMLICYTSNK---FPTDYIP--TVFDNFSA-NVVA-------------E--G----TTVNL 58 (168)
Q Consensus 4 ~~~~~~~i~vvG~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~~ 58 (168)
...+.++|+++|+.++|||||+++|.+.. +.....+ |+...+.. .... + + ....+
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence 34567999999999999999999998542 3333333 33323321 1111 1 1 23789
Q ss_pred EEEeCCCCccccccccccccCCcEEEEEEeCCCh----hHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcC
Q 030961 59 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 134 (168)
Q Consensus 59 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 134 (168)
.+|||||++.|...+...+..+|++++|+|++++ .+++.+ ..+... ...|+++++||+|+.....
T Consensus 84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-----~~~~~l-~~~~iivv~NK~Dl~~~~~----- 152 (408)
T 1s0u_A 84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-----MALEIL-GIDKIIIVQNKIDLVDEKQ----- 152 (408)
T ss_dssp EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-----HHHHHT-TCCCEEEEEECTTSSCTTT-----
T ss_pred EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-----HHHHHc-CCCeEEEEEEccCCCCHHH-----
Confidence 9999999999888777778899999999999854 444433 222221 2358999999999976532
Q ss_pred CCCCcccHHHHHHHHHHh--CCcEEEEecccCccCC
Q 030961 135 PGLVPVTTAQGEELRKQI--GASYYIECSSKTQQVC 168 (168)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i 168 (168)
.....++.++++..+ ...+++++||++|+||
T Consensus 153 ---~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi 185 (408)
T 1s0u_A 153 ---AEENYEQIKEFVKGTIAENAPIIPISAHHEANI 185 (408)
T ss_dssp ---TTTHHHHHHHHHTTSTTTTCCEEEC------CH
T ss_pred ---HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCH
Confidence 012345666666543 2238999999999985
No 148
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.85 E-value=7e-21 Score=146.76 Aligned_cols=154 Identities=13% Similarity=0.091 Sum_probs=101.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC--CCCCC------------------C-----------CCceeeceeEEEEECC
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD------------------Y-----------IPTVFDNFSANVVAEG 53 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~--~~~~~------------------~-----------~~~~~~~~~~~~~~~~ 53 (168)
....++|+++|++++|||||+++|++. .+... + ...++.... ...++.
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~-~~~~~~ 82 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIA-LWKFET 82 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCS-CEEEEC
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEE-EEEEec
Confidence 346799999999999999999999864 12110 0 001111111 112333
Q ss_pred eEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChh---HHH---HHHHhHHHHHchhCCCCc-EEEEeeCCcccc
Q 030961 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYE---NVLKKWIPELQHYSPGVP-VVLVGTKLDLRE 126 (168)
Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~l~~~~~~~p-~ivv~nK~D~~~ 126 (168)
....+.+|||||++.|...+...++.+|++++|+|++++. +|+ .. .+++..+.. .++| +++++||+|+..
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt-~~~~~~~~~--~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQT-REHALLAFT--LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHH-HHHHHHHHH--TTCCEEEEEEECGGGGT
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhH-HHHHHHHHH--cCCCeEEEEEEcccccc
Confidence 4467889999999999888888899999999999998764 221 22 223333332 3565 899999999974
Q ss_pred cchhhhcCCCCCcccHHHHHHHHHHhCC----cEEEEecccCccCC
Q 030961 127 DKHYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQVC 168 (168)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i 168 (168)
..... .....++...++..+++ .+++++||++|+||
T Consensus 160 ~~~~~------~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv 199 (458)
T 1f60_A 160 WDESR------FQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM 199 (458)
T ss_dssp TCHHH------HHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred CCHHH------HHHHHHHHHHHHHHcCCCccCceEEEeecccCcCc
Confidence 21100 00234566777777764 48999999999986
No 149
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.85 E-value=1.8e-21 Score=153.71 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=100.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC--CCCC-----CCC------ceeecee---EEEEE---CCeEEEEEEEeCCCCc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNK--FPTD-----YIP------TVFDNFS---ANVVA---EGTTVNLGLWDTAGQE 67 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~--~~~~-----~~~------~~~~~~~---~~~~~---~~~~~~~~i~D~~g~~ 67 (168)
...+|+++|+.++|||||+++|+... +... ... ..+.+.. ..+.. ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999998632 1110 000 0111111 11212 4567899999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHH
Q 030961 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (168)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (168)
.|...+...++.+|++++|+|++++.+.... ..|...+. .++|+++++||+|+...+ ..+...+
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~---~~ipiIvViNKiDl~~a~------------~~~v~~e 146 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAME---MDLEVVPVLNKIDLPAAD------------PERVAEE 146 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHH---TTCEEEEEEECTTSTTCC------------HHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEeeeccCccccc------------HHHHHHH
Confidence 9998888999999999999999998777765 56665554 368999999999997653 2333455
Q ss_pred HHHHhCCc--EEEEecccCccCC
Q 030961 148 LRKQIGAS--YYIECSSKTQQVC 168 (168)
Q Consensus 148 ~~~~~~~~--~~~~~Sa~~~~~i 168 (168)
+...+++. .++++||++|.||
T Consensus 147 i~~~lg~~~~~vi~vSAktg~GI 169 (599)
T 3cb4_D 147 IEDIVGIDATDAVRCSAKTGVGV 169 (599)
T ss_dssp HHHHTCCCCTTCEEECTTTCTTH
T ss_pred HHHHhCCCcceEEEeecccCCCc
Confidence 66666652 4899999999985
No 150
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.85 E-value=2.7e-21 Score=149.77 Aligned_cols=147 Identities=19% Similarity=0.126 Sum_probs=98.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC-------CCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCcccccccccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK-------FPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLS 76 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 76 (168)
..+.++|+++|+.++|||||+++|.+.. +.....+.++... ...+..++ ..+.+|||||++.|...+...
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence 3467999999999999999999999765 1222222222221 11233344 578889999999988888888
Q ss_pred ccCCcEEEEEEeCCC---hhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHh-
Q 030961 77 YRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI- 152 (168)
Q Consensus 77 ~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 152 (168)
+..+|++++|+|+++ +.+.+.+ ..+.. .++|.++++||+|+...... ....++..+++...
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l-----~~~~~--~~ip~IvviNK~Dl~~~~~~--------~~~~~~l~~~l~~~~ 158 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHM-----LILDH--FNIPIIVVITKSDNAGTEEI--------KRTEMIMKSILQSTH 158 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHH-----HHHHH--TTCCBCEEEECTTSSCHHHH--------HHHHHHHHHHHHHSS
T ss_pred HhhCCEEEEEEecCCCccHHHHHHH-----HHHHH--cCCCEEEEEECCCcccchhH--------HHHHHHHHHHHhhhc
Confidence 899999999999988 4444433 23333 35888999999999754220 02345566666554
Q ss_pred C--CcEEEEecccCccCC
Q 030961 153 G--ASYYIECSSKTQQVC 168 (168)
Q Consensus 153 ~--~~~~~~~Sa~~~~~i 168 (168)
+ ..+++++||++|+||
T Consensus 159 ~~~~~~ii~vSA~~g~gI 176 (482)
T 1wb1_A 159 NLKNSSIIPISAKTGFGV 176 (482)
T ss_dssp SGGGCCEEECCTTTCTTH
T ss_pred ccccceEEEEECcCCCCH
Confidence 2 238999999999985
No 151
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.1e-22 Score=151.00 Aligned_cols=147 Identities=14% Similarity=0.143 Sum_probs=82.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC-CCCCCC--------Cceeece-eEEEEECCeEEEEEEEeCCCC-------ccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYI--------PTVFDNF-SANVVAEGTTVNLGLWDTAGQ-------EDY 69 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~-~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~i~D~~g~-------~~~ 69 (168)
..++|+++|++|+|||||+++|++.. +...+. ++.+..+ ...+..++..+.+.+|||||. +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 46899999999999999999987643 322221 3333332 222334566788999999998 666
Q ss_pred ccccc-------ccccCCc-----------EEEEEEeCCC-hhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchh
Q 030961 70 NRLRP-------LSYRGAD-----------VFVLAFSLVS-RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 130 (168)
Q Consensus 70 ~~~~~-------~~~~~~~-----------~~i~v~d~~~-~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~ 130 (168)
..++. .+++.++ +.+++|++++ ..++..+...|++.+. .++|+++|+||+|+...+.
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~e- 191 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKE- 191 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHH-
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHH-
Confidence 66654 4443322 2234454443 4555555345666553 5789999999999986654
Q ss_pred hhcCCCCCcccH--HHHHHHHHHhCCcEEEEecccCccC
Q 030961 131 LADHPGLVPVTT--AQGEELRKQIGASYYIECSSKTQQV 167 (168)
Q Consensus 131 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (168)
+.. +++..++..+++ +++++||++|.|
T Consensus 192 ---------v~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~ 220 (361)
T 2qag_A 192 ---------RERLKKRILDEIEEHNI-KIYHLPDAESDE 220 (361)
T ss_dssp ---------HHHHHHHHHHHTTCC-C-CSCCCC------
T ss_pred ---------HHHHHHHHHHHHHHCCC-CEEeCCCcCCCc
Confidence 333 567777777887 899999998865
No 152
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=1.5e-20 Score=144.37 Aligned_cols=146 Identities=21% Similarity=0.196 Sum_probs=93.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccc-----------
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR----------- 73 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------- 73 (168)
..++++++|++|||||||+|+|.+... .....++..+.....+.+++. .+.+|||+|........
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 468999999999999999999998764 222223322233456667776 45679999975433221
Q ss_pred -cccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHH-HHHHH
Q 030961 74 -PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-ELRKQ 151 (168)
Q Consensus 74 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 151 (168)
...++.+|++++|+|+.++.+... ..+...+.. .+.|+++++||+|+...+. ...++.. .+.+.
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~--~~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~ 322 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQD--QRMAGLMER--RGRASVVVFNKWDLVVHRE----------KRYDEFTKLFREK 322 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH--TTCEEEEEEECGGGSTTGG----------GCHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCCCchh----------hHHHHHHHHHHHH
Confidence 123567899999999988766654 234444444 4789999999999976432 2233322 22222
Q ss_pred h---CCcEEEEecccCccCC
Q 030961 152 I---GASYYIECSSKTQQVC 168 (168)
Q Consensus 152 ~---~~~~~~~~Sa~~~~~i 168 (168)
+ +..+++++||++|.||
T Consensus 323 ~~~~~~~~~~~~SA~~g~gv 342 (439)
T 1mky_A 323 LYFIDYSPLIFTSADKGWNI 342 (439)
T ss_dssp CGGGTTSCEEECBTTTTBSH
T ss_pred hccCCCCcEEEEECCCCCCH
Confidence 2 2348999999999985
No 153
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.85 E-value=5.5e-21 Score=135.78 Aligned_cols=150 Identities=17% Similarity=0.138 Sum_probs=90.1
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeece-eEEEEECCeEEEEEEEeCCCCc-----------ccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDNF-SANVVAEGTTVNLGLWDTAGQE-----------DYN 70 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~i~D~~g~~-----------~~~ 70 (168)
....++|+++|.+|+|||||+++|++..+.....+ +.+... ......++. .+.+|||||.. .+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHH
Confidence 34679999999999999999999999877554444 222222 223445554 56779999943 333
Q ss_pred ccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhC---CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHH
Q 030961 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (168)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (168)
..+...++++|++++|+|+++..... ..++..+.... ...|+++|+||+|+........ ......+.++.
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~---~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~----~i~~~~~~l~~ 176 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEE---HKATEKILKMFGERARSFMILIFTRKDDLGDTNLHD----YLREAPEDIQD 176 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHH---HHHHHHHHHHHHHHHGGGEEEEEECGGGC----------------CHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHH---HHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHH----HHHhchHHHHH
Confidence 44444567889999999987543321 22333332211 2469999999999876533000 00011246788
Q ss_pred HHHHhCCcEEEEecccC
Q 030961 148 LRKQIGASYYIECSSKT 164 (168)
Q Consensus 148 ~~~~~~~~~~~~~Sa~~ 164 (168)
+.+..+. .|+.+++..
T Consensus 177 l~~~~~~-~~~~~~~~~ 192 (239)
T 3lxx_A 177 LMDIFGD-RYCALNNKA 192 (239)
T ss_dssp HHHHHSS-SEEECCTTC
T ss_pred HHHHcCC-EEEEEECCC
Confidence 8888887 676666553
No 154
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.84 E-value=1.1e-21 Score=151.04 Aligned_cols=139 Identities=20% Similarity=0.269 Sum_probs=89.9
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeec-eeEEEEECCeEEEEEEEeCCCCcccccccc--------cc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDN-FSANVVAEGTTVNLGLWDTAGQEDYNRLRP--------LS 76 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--------~~ 76 (168)
..++|+++|.+|+|||||+|+|.+..+. ....+..+.+ ....+.+++. .+.+|||||...+...++ ..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4679999999999999999999986432 2222333333 3445666764 467799999866543322 35
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcE
Q 030961 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 156 (168)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (168)
++.+|++++|+|++++.+... ..|+..+.. .|+++|+||+|+..... .. ..+.+. .+. +
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~~----~piivV~NK~Dl~~~~~----------~~--~~~~~~--~~~-~ 359 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD--QEIYEQVKH----RPLILVMNKIDLVEKQL----------IT--SLEYPE--NIT-Q 359 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH--HHHHHHHTT----SCEEEEEECTTSSCGGG----------ST--TCCCCT--TCC-C
T ss_pred hhcCCEEEEEeccCCCCCHHH--HHHHHhccC----CcEEEEEECCCCCcchh----------hH--HHHHhc--cCC-c
Confidence 788999999999999877665 456666643 79999999999976643 11 111111 233 7
Q ss_pred EEEecccCccCC
Q 030961 157 YIECSSKTQQVC 168 (168)
Q Consensus 157 ~~~~Sa~~~~~i 168 (168)
++++||++|+||
T Consensus 360 ~i~iSAktg~Gi 371 (462)
T 3geh_A 360 IVHTAAAQKQGI 371 (462)
T ss_dssp EEEEBTTTTBSH
T ss_pred EEEEECCCCCCH
Confidence 999999999985
No 155
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.84 E-value=2.9e-21 Score=139.91 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=85.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCC-CCCC-------CCceeece-eEEEEECCeEEEEEEEeCCCCccc------
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKF-PTDY-------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY------ 69 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~-~~~~-------~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~------ 69 (168)
+...++|+++|.+|+|||||+|++++... ...+ .+|.+... ...+..++..+.+.+|||||....
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 44579999999999999999999877654 3332 34444333 233444566679999999997322
Q ss_pred -cccc-------cccc-------------cCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccc
Q 030961 70 -NRLR-------PLSY-------------RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (168)
Q Consensus 70 -~~~~-------~~~~-------------~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~ 128 (168)
..+. ..++ ..+|+++++++.++.. +......+++.+.. ++|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE---KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT---TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc---cCCEEEEEeccCCCCHH
Confidence 1111 1111 2377899988765422 11222456666665 68999999999986543
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCccCC
Q 030961 129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
.. ....+...+.....++ +++++||++++|+
T Consensus 161 e~--------~~~~~~i~~~l~~~~i-~v~~~sa~~~~~~ 191 (274)
T 3t5d_A 161 EC--------QQFKKQIMKEIQEHKI-KIYEFPETDDEEE 191 (274)
T ss_dssp HH--------HHHHHHHHHHHHHTTC-CCCCC--------
T ss_pred HH--------HHHHHHHHHHHHHcCC-eEEcCCCCCChhH
Confidence 20 0122345555566777 7889999998875
No 156
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.84 E-value=4.8e-21 Score=141.13 Aligned_cols=112 Identities=16% Similarity=0.144 Sum_probs=84.1
Q ss_pred EEEEEEEeCCCCccccccccccccCCcEEEEEEeCC----------ChhHHHHHHHhHHHHHchhC--CCCcEEEEeeCC
Q 030961 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPELQHYS--PGVPVVLVGTKL 122 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~ 122 (168)
.+.+++||++|++.++.+|..++++++++++|||++ +..++.+. ..|+..+.... .+.|++|++||+
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es-~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHH-HHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHH-HHHHHHHhhhhccCCceEEEEEECc
Confidence 477889999999999999999999999999999654 67788887 55666655432 689999999999
Q ss_pred cccccchhhh------cCCCCCcccHHHHHHHH----------HHhCCcEEEEecccCccCC
Q 030961 123 DLREDKHYLA------DHPGLVPVTTAQGEELR----------KQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 123 D~~~~~~~~~------~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~Sa~~~~~i 168 (168)
|+..++.... +.........+++.++. ...++ .+++|||+++.||
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~nV 305 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTENI 305 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHHH
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHHH
Confidence 9976542110 11112246788888884 33454 7889999998875
No 157
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.84 E-value=7.2e-21 Score=147.01 Aligned_cols=156 Identities=17% Similarity=0.100 Sum_probs=87.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC--CCCC----------------------CCC-------Cceeecee-EEEEEC
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPT----------------------DYI-------PTVFDNFS-ANVVAE 52 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~--~~~~----------------------~~~-------~~~~~~~~-~~~~~~ 52 (168)
....++|+++|+.++|||||+++|+.. .+.. ..+ ..++.... ..+..+
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 346789999999999999999999752 1210 000 00011110 112223
Q ss_pred CeEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChh---HHHHH--HHhHHHHHchhCCCCc-EEEEeeCCcccc
Q 030961 53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYENV--LKKWIPELQHYSPGVP-VVLVGTKLDLRE 126 (168)
Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~--~~~~~~~l~~~~~~~p-~ivv~nK~D~~~ 126 (168)
...+.+|||||++.|...+...++.+|++++|+|++++. +|+.. ..+.+..+.. .++| +++++||+|+..
T Consensus 120 --~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 120 --HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEPS 195 (467)
T ss_dssp --SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTSTT
T ss_pred --CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccCCC
Confidence 356788999999999988888899999999999999863 33211 0122222222 3577 999999999964
Q ss_pred cchhhhcCCCCCcccHHHHHHHHHHh-CC-----cEEEEecccCccCC
Q 030961 127 DKHYLADHPGLVPVTTAQGEELRKQI-GA-----SYYIECSSKTQQVC 168 (168)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~Sa~~~~~i 168 (168)
..... .......++...++... ++ .+++++||++|+||
T Consensus 196 ~~~~~----~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i 239 (467)
T 1r5b_A 196 VQWSE----ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNV 239 (467)
T ss_dssp CSSCH----HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTT
T ss_pred ccccH----HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccc
Confidence 21000 00012345566777665 42 37999999999986
No 158
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.84 E-value=5.1e-21 Score=145.55 Aligned_cols=152 Identities=19% Similarity=0.145 Sum_probs=104.2
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC--------CCCCC--CCC-----ceeece-eEEEEECCeEEEEEEEeCCCCcc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--------KFPTD--YIP-----TVFDNF-SANVVAEGTTVNLGLWDTAGQED 68 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~--------~~~~~--~~~-----~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~ 68 (168)
....++|+++|++++|||||+++|.+. .+... .+. +.+... .....++.....+.+|||||++.
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 456789999999999999999999873 11110 000 111111 12233444456778899999999
Q ss_pred ccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCc-EEEEeeCCcccccchhhhcCCCCCcccHHHHHH
Q 030961 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 147 (168)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (168)
|...+...++.+|++++|+|++++..... .+++..+.. .++| +++++||+|+....... ....++...
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~--~~ip~iivviNK~Dl~~~~~~~-------~~~~~~~~~ 156 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFMNKVDMVDDPELL-------DLVEMEVRD 156 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHH--TTCCCEEEEEECGGGCCCHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCEEEEEEECccccCcHHHH-------HHHHHHHHH
Confidence 98888888999999999999988765433 455555554 3578 89999999997532100 023346677
Q ss_pred HHHHhCC----cEEEEecccCccC
Q 030961 148 LRKQIGA----SYYIECSSKTQQV 167 (168)
Q Consensus 148 ~~~~~~~----~~~~~~Sa~~~~~ 167 (168)
++..+++ .+++++||++|.|
T Consensus 157 ~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 157 LLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHHhcccccCCCEEEccHHHhhh
Confidence 7777763 4899999999876
No 159
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.83 E-value=2.4e-20 Score=142.07 Aligned_cols=150 Identities=15% Similarity=0.092 Sum_probs=98.8
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC---CCCCCCC--ceeeceeE-EEEE-------------C--C----eEEEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK---FPTDYIP--TVFDNFSA-NVVA-------------E--G----TTVNLG 59 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~~~ 59 (168)
..+.++|+++|+.++|||||+++|.+.. +.....+ |+...+.. .... + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999998542 2222223 33222321 1111 1 1 137899
Q ss_pred EEeCCCCccccccccccccCCcEEEEEEeCCCh----hHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCC
Q 030961 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 135 (168)
Q Consensus 60 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 135 (168)
+|||||++.|...+...+..+|++++|+|++++ .+.+.+ ..+... ...|+++++||+|+......
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-----~~~~~~-~~~~iivviNK~Dl~~~~~~----- 155 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-----MALQII-GQKNIIIAQNKIELVDKEKA----- 155 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-----HHHHHH-TCCCEEEEEECGGGSCHHHH-----
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-----HHHHHc-CCCcEEEEEECccCCCHHHH-----
Confidence 999999999887777778889999999999864 344333 222222 23589999999999765320
Q ss_pred CCCcccHHHHHHHHHHh--CCcEEEEecccCccCC
Q 030961 136 GLVPVTTAQGEELRKQI--GASYYIECSSKTQQVC 168 (168)
Q Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i 168 (168)
....++.+++.... ...+++++||++|+||
T Consensus 156 ---~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi 187 (410)
T 1kk1_A 156 ---LENYRQIKEFIEGTVAENAPIIPISALHGANI 187 (410)
T ss_dssp ---HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSH
T ss_pred ---HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCH
Confidence 01234455555431 2238999999999985
No 160
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=7e-22 Score=152.38 Aligned_cols=142 Identities=18% Similarity=0.102 Sum_probs=90.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCC--------Cccccccccccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAG--------QEDYNRLRPLSY 77 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~~~ 77 (168)
...+|+++|.+|||||||+|+|.+.++... ..+.+.+. .....+......+.+||||| ++.+...+..++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 467999999999999999999998765321 22223232 22334444556788899999 556666677778
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEE
Q 030961 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 157 (168)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (168)
+.+|++++|+|..++.+... ..+...+.+ .+.|+++|+||+|+..... ...++ ...+....
T Consensus 101 ~~ad~il~VvD~~~~~~~~d--~~l~~~l~~--~~~pvilV~NK~D~~~~~~--------------~~~e~-~~lg~~~~ 161 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRA--------------NIYDF-YSLGFGEP 161 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHH--HHHHHHHTT--CCSCEEEEEECC-----------------------CCS-GGGSSSSE
T ss_pred hhCCEEEEEEeCCCCCChHH--HHHHHHHHH--cCCCEEEEEECccchhhhh--------------hHHHH-HHcCCCce
Confidence 89999999999877544433 345555554 5799999999999864321 01111 12344356
Q ss_pred EEecccCccCC
Q 030961 158 IECSSKTQQVC 168 (168)
Q Consensus 158 ~~~Sa~~~~~i 168 (168)
+++||++|.|+
T Consensus 162 ~~iSA~~g~gv 172 (456)
T 4dcu_A 162 YPISGTHGLGL 172 (456)
T ss_dssp EECCTTTCTTH
T ss_pred EEeecccccch
Confidence 79999999885
No 161
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.83 E-value=8e-20 Score=144.97 Aligned_cols=154 Identities=12% Similarity=0.069 Sum_probs=99.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCC-------------------------------CceeeceeEEEEECCe
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI-------------------------------PTVFDNFSANVVAEGT 54 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 54 (168)
...++|+++|++++|||||+++|++........ +.++... ....+...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~-~~~~~~~~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSI-CTSHFSTH 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSC-SCCEEECS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEee-eeEEEecC
Confidence 457899999999999999999998763211100 0111111 11122233
Q ss_pred EEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhH---H---HHHHHhHHHHHchhCCCCcEEEEeeCCcccccc
Q 030961 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS---Y---ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~ 128 (168)
...+.+|||||++.|...+...++.+|++++|+|++++.. + ... .+.+..+... ...|++||+||+|+...+
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt-~e~l~~~~~l-gi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQT-KEHMLLASSL-GIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHH-HHHHHHHHTT-TCCEEEEEEECTTTTTTC
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHH-HHHHHHHHHc-CCCeEEEEEecccccchh
Confidence 4578889999999999888899999999999999987531 0 111 2222222221 224599999999997632
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHhCC----cEEEEecccCccCC
Q 030961 129 HYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQVC 168 (168)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i 168 (168)
.... ....++...+....+. .+++++||++|+||
T Consensus 322 ~~~~------~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI 359 (611)
T 3izq_1 322 QQRF------EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGV 359 (611)
T ss_dssp HHHH------HHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTT
T ss_pred HHHH------HHHHHHHHHHHHhhcccccCccEEeeecccCCCc
Confidence 2000 0223445555555553 48999999999986
No 162
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.83 E-value=7.4e-20 Score=137.14 Aligned_cols=148 Identities=17% Similarity=0.082 Sum_probs=94.7
Q ss_pred eeE-EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeec-eeEEEEECCeEEEEEEEeCCCCcc---------cccccccc
Q 030961 8 FIK-CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVVAEGTTVNLGLWDTAGQED---------YNRLRPLS 76 (168)
Q Consensus 8 ~~~-i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~ 76 (168)
.++ |+++|.+|+|||||+|+|.+..+.....+..+.+ ....+.+++ ..+.+|||+|... +.... ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 344 9999999999999999999876532222222222 345666777 4567899999622 22222 24
Q ss_pred ccCCcEEEEEEeCCChh--HHHHHHHhHHHHHchhC-CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHh-
Q 030961 77 YRGADVFVLAFSLVSRA--SYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI- 152 (168)
Q Consensus 77 ~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~l~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 152 (168)
+..+|++++|+|++++. ..... ..|...+.... .+.|+++|+||+|+..... ....+.+..++..+
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~---------~~~~~~~~~l~~~l~ 324 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGDL---------YKKLDLVEKLSKELY 324 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSCH---------HHHHHHHHHHHHHHC
T ss_pred HHhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCchH---------HHHHHHHHHHHHHhc
Confidence 67899999999998876 44443 55666666554 5789999999999865421 01122344455555
Q ss_pred C-CcEEEEecccCccCC
Q 030961 153 G-ASYYIECSSKTQQVC 168 (168)
Q Consensus 153 ~-~~~~~~~Sa~~~~~i 168 (168)
. ..+++++||++|+|+
T Consensus 325 ~~~~~~~~~SA~~g~gi 341 (364)
T 2qtf_A 325 SPIFDVIPISALKRTNL 341 (364)
T ss_dssp SCEEEEEECBTTTTBSH
T ss_pred CCCCcEEEEECCCCcCH
Confidence 2 236899999999984
No 163
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.83 E-value=3.3e-20 Score=132.50 Aligned_cols=149 Identities=12% Similarity=0.057 Sum_probs=87.5
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeec-e--eEEEEECCeEEEEEEEeCCCC--------ccccccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-F--SANVVAEGTTVNLGLWDTAGQ--------EDYNRLR 73 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~ 73 (168)
....++|+++|.+|+|||||+|++++........+..+.+ . ......++ ..+.+|||||. +.+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 3568999999999999999999999987654333332111 1 22333444 56778999996 3332222
Q ss_pred cccc----cCCcEEEEEEeCCChhHHHHHHHhHHHHHchhC----CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHH
Q 030961 74 PLSY----RGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG 145 (168)
Q Consensus 74 ~~~~----~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
...+ +.+|++++|+|+++....+ ..+++.+.... .+.|++|++||+|+....... . ......+..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~-~---l~~~~~~~l 168 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQD---QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHD-Y---VSNTENRAL 168 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHH-H---HHHCCCHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHH---HHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHH-H---HhhcccHHH
Confidence 2223 8999999999997532222 23333333321 368999999999996542100 0 000011456
Q ss_pred HHHHHHhCCcEEEEeccc
Q 030961 146 EELRKQIGASYYIECSSK 163 (168)
Q Consensus 146 ~~~~~~~~~~~~~~~Sa~ 163 (168)
+.+...++. .|+.+++.
T Consensus 169 ~~l~~~~g~-~~~~~~~~ 185 (247)
T 3lxw_A 169 RELVAECGG-RVCAFDNR 185 (247)
T ss_dssp HHHHHHTTT-CEEECCTT
T ss_pred HHHHHHcCC-eEEEEeCC
Confidence 778888887 56555544
No 164
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.83 E-value=1.6e-20 Score=142.53 Aligned_cols=149 Identities=19% Similarity=0.137 Sum_probs=100.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC-------CCCC--C-------CCceeeceeEEEEECCeEEEEEEEeCCCCcccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNK-------FPTD--Y-------IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN 70 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~-------~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 70 (168)
+.++|+++|++++|||||+++|.+.. +... . ....+... ....+......+.+|||||++.|.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~-~~~~~~~~~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINA-AHVEYSTAARHYAHTDCPGHADYV 80 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEEC-EEEEEECSSCEEEEEECSSHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEe-eeEEeccCCeEEEEEECCChHHHH
Confidence 46899999999999999999998731 1100 0 00011111 112233344678889999999988
Q ss_pred ccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCc-EEEEeeCCcccccchhhhcCCCCCcccHHHHHHHH
Q 030961 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 149 (168)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (168)
..+...++.+|++++|+|++++...+. .+++..+.. .++| +++++||+|+...... .....++.++++
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt--~e~l~~~~~--~~vp~iivviNK~Dl~~~~~~-------~~~~~~~~~~~l 149 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQT--REHLLLARQ--IGVEHVVVYVNKADAVQDSEM-------VELVELEIRELL 149 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHH--HHHHHHHHH--TTCCCEEEEEECGGGCSCHHH-------HHHHHHHHHHHH
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCeEEEEEECcccCCCHHH-------HHHHHHHHHHHH
Confidence 777788899999999999998654443 233344443 3678 7899999999753210 002345677777
Q ss_pred HHhCC----cEEEEecccCccC
Q 030961 150 KQIGA----SYYIECSSKTQQV 167 (168)
Q Consensus 150 ~~~~~----~~~~~~Sa~~~~~ 167 (168)
..+++ .+++++||++|.|
T Consensus 150 ~~~~~~~~~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 150 TEFGYKGEETPIIVGSALCALE 171 (397)
T ss_dssp HHTTSCTTTSCEEECCHHHHHT
T ss_pred HHcCCCcccCcEEEeehhhccc
Confidence 77764 4899999999764
No 165
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.82 E-value=1.3e-19 Score=143.16 Aligned_cols=114 Identities=20% Similarity=0.160 Sum_probs=80.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCceeeceeEE-------------EEECCeEEEEEEEeCCCCcc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY----IPTVFDNFSAN-------------VVAEGTTVNLGLWDTAGQED 68 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~-------------~~~~~~~~~~~i~D~~g~~~ 68 (168)
.+.++|+++|++++|||||+++|.+..+.... ..+.+..+... ..++.....+.+|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 35789999999999999999999876442211 11211111100 00011122588899999999
Q ss_pred ccccccccccCCcEEEEEEeCCC---hhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccc
Q 030961 69 YNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (168)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~ 126 (168)
|..++...++.+|++++|+|+++ +.+++.+ . .+.. .++|+++++||+|+..
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~----~l~~--~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRM--YRTPFVVAANKIDRIH 136 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-H----HHHH--TTCCEEEEEECGGGST
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-H----HHHH--cCCeEEEEeccccccc
Confidence 99999999999999999999999 6666544 2 2223 4689999999999964
No 166
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.82 E-value=3.3e-21 Score=149.14 Aligned_cols=150 Identities=20% Similarity=0.240 Sum_probs=96.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCccccccccccccCCcEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (168)
.+.++|+++|++++|||||+++|.+..+.....+.++.+.. ..+..++ ..+.+|||||++.|..++...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 35789999999999999999999876543332222222211 1122233 35778999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccch-hhhcCCCCCcccHHHHHHHHHHhC-CcEEEEecc
Q 030961 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH-YLADHPGLVPVTTAQGEELRKQIG-ASYYIECSS 162 (168)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 162 (168)
+|+|++++...+.. + .+..+.. .++|+++++||+|+...+. .......... .++..++ ..+++++||
T Consensus 80 LVVda~~g~~~qT~-e-~l~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~-------~~~~~~~~~~~~v~vSA 148 (501)
T 1zo1_I 80 LVVAADDGVMPQTI-E-AIQHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYG-------ILPEEWGGESQFVHVSA 148 (501)
T ss_dssp EEEETTTBSCTTTH-H-HHHHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCC-------CCTTCCSSSCEEEECCT
T ss_pred EEeecccCccHHHH-H-HHHHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhh-------hhHHHhCCCccEEEEee
Confidence 99999884322221 1 2222222 4689999999999975321 0000000000 0111222 248999999
Q ss_pred cCccCC
Q 030961 163 KTQQVC 168 (168)
Q Consensus 163 ~~~~~i 168 (168)
++|.||
T Consensus 149 ktG~gI 154 (501)
T 1zo1_I 149 KAGTGI 154 (501)
T ss_dssp TTCTTC
T ss_pred eeccCc
Confidence 999986
No 167
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.82 E-value=6.5e-21 Score=148.86 Aligned_cols=118 Identities=11% Similarity=0.013 Sum_probs=82.7
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC----------CCCCc----------eeece-eEEEEECCeEEEEEEEeCC
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPT----------DYIPT----------VFDNF-SANVVAEGTTVNLGLWDTA 64 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~----------~~~~~----------~~~~~-~~~~~~~~~~~~~~i~D~~ 64 (168)
.+..+|+++|++++|||||+++|+...-.. ....+ .+... .....+....+.+.+||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 457899999999999999999996211000 00000 01111 1122233334678889999
Q ss_pred CCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 65 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
|+..|...+...++.+|++++|+|++++.+.... ..| ..+.. .++|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~-~~~~~--~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLM-EVCRL--RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHH-HHHHT--TTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHH--cCCCEEEEEeCCCCccc
Confidence 9999999999999999999999999998777664 334 34443 36899999999999654
No 168
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.81 E-value=5.6e-20 Score=132.32 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=81.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeceeEEEEECCeEEEEEEEeCCCCcccccccccccc------
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR------ 78 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~------ 78 (168)
+.++|+++|.+|+|||||+++|++.... ..+.++........+..++ ..+.+|||||++.+....+.+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 5799999999999999999999988752 2222222222233344444 47788999999887665555443
Q ss_pred ---CCcEEEEEEeCCChhHHHHHHHhHHHHHchhC-C--CCcEEEEeeCCccccc
Q 030961 79 ---GADVFVLAFSLVSRASYENVLKKWIPELQHYS-P--GVPVVLVGTKLDLRED 127 (168)
Q Consensus 79 ---~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~--~~p~ivv~nK~D~~~~ 127 (168)
.+|++++|+++++.. +......|+..+.+.. . ..|+++|+||+|+...
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 789999999886644 3333246666666654 2 2499999999999644
No 169
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.81 E-value=1.7e-20 Score=137.10 Aligned_cols=150 Identities=19% Similarity=0.162 Sum_probs=93.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC------CCCCcee--------------------ecee-------------
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPT------DYIPTVF--------------------DNFS------------- 46 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~------~~~~~~~--------------------~~~~------------- 46 (168)
...++|+++|.+|+|||||+|+|++..+.. ...++.. ..+.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 356799999999999999999999987632 1122200 0000
Q ss_pred -----------EEEEEC-CeEEEEEEEeCCCCcc-------------ccccccccccCCcEEE-EEEeCCChhHHHHHHH
Q 030961 47 -----------ANVVAE-GTTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFV-LAFSLVSRASYENVLK 100 (168)
Q Consensus 47 -----------~~~~~~-~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~ 100 (168)
..+.+. .....+.+|||||... +..+...+++.++.++ +|+|+++..+.... .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~ 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-L 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-H
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-H
Confidence 000000 0125788899999642 3345556777888666 79999876554443 3
Q ss_pred hHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHH--HhCCcEEEEecccCccCC
Q 030961 101 KWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK--QIGASYYIECSSKTQQVC 168 (168)
Q Consensus 101 ~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i 168 (168)
.+...+.. .+.|+++|+||+|+..... ...+..+.... ..++.+++++||++|.|+
T Consensus 183 ~~~~~~~~--~~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi 240 (299)
T 2aka_B 183 KIAKEVDP--QGQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGK 240 (299)
T ss_dssp HHHHHHCT--TCSSEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCCBCTTSC
T ss_pred HHHHHhCC--CCCeEEEEEEccccCCCCc----------hHHHHHhCCcCcCCCCcEEEECCChhhcccc
Confidence 45555554 4689999999999975432 12222211000 113346889999999986
No 170
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.81 E-value=5.3e-20 Score=136.10 Aligned_cols=114 Identities=13% Similarity=0.112 Sum_probs=82.7
Q ss_pred eEEEEEEEeCCCCccccccccccccCCcEEEEEEeCC----------ChhHHHHHHHhHHHHHchhC--CCCcEEEEeeC
Q 030961 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPELQHYS--PGVPVVLVGTK 121 (168)
Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK 121 (168)
..+.+++||++|++.++.+|..++++++++++|||++ +..++.+. ..|+..+.... .++|++|++||
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es-~~~~~~i~~~~~~~~~piiLv~NK 237 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTES-IAVFKDIMTNEFLKGAVKLIFLNK 237 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHH-HHHHHHHHHCGGGTTSEEEEEEEC
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHH-HHHHHHHhhhhccCCCeEEEEEEC
Confidence 3467899999999999999999999999999999998 78888888 55665555432 68999999999
Q ss_pred Ccccccchhhhc----C-CCCCcccHHHHHHHHH-Hh-------------------------CCcEEEEecccCccCC
Q 030961 122 LDLREDKHYLAD----H-PGLVPVTTAQGEELRK-QI-------------------------GASYYIECSSKTQQVC 168 (168)
Q Consensus 122 ~D~~~~~~~~~~----~-~~~~~~~~~~~~~~~~-~~-------------------------~~~~~~~~Sa~~~~~i 168 (168)
+|+..++....+ . +...+...+++.++.. .+ ....+++|||+++.||
T Consensus 238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv 315 (340)
T 4fid_A 238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNI 315 (340)
T ss_dssp HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHH
T ss_pred chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHH
Confidence 999765431111 0 0011125666655553 33 1247889999998774
No 171
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.81 E-value=9.1e-21 Score=149.93 Aligned_cols=154 Identities=16% Similarity=0.130 Sum_probs=82.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCC--CCC-----------------------------CCCCceeeceeEEEEECCe
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNK--FPT-----------------------------DYIPTVFDNFSANVVAEGT 54 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 54 (168)
...++|+++|++++|||||+++|++.. +.. ...+.++.... ...+...
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~-~~~~~~~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVA-STTFESD 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEee-EEEEEeC
Confidence 457899999999999999999996421 000 00111111110 1112223
Q ss_pred EEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChh---HH--HHHHHhHHHHHchhCCCCc-EEEEeeCCcccccc
Q 030961 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SY--ENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDK 128 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~l~~~~~~~p-~ivv~nK~D~~~~~ 128 (168)
...+.+|||||++.|...+...++.+|++++|+|++++. .+ .....+.+..+.. .++| +++++||+|+....
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNKiDl~~~~ 331 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNKLDLMSWS 331 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEECGGGGTTC
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEecccccccc
Confidence 467888999999999988888999999999999998642 11 1100222223332 2455 99999999997532
Q ss_pred hhhhcCCCCCcccHHHHHHHH-HHhCC----cEEEEecccCccCC
Q 030961 129 HYLADHPGLVPVTTAQGEELR-KQIGA----SYYIECSSKTQQVC 168 (168)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i 168 (168)
... .....++...+. ...++ .+++++||++|.||
T Consensus 332 ~~~------~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI 370 (592)
T 3mca_A 332 EDR------FQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNL 370 (592)
T ss_dssp HHH------HHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSS
T ss_pred HHH------HHHHHHHHHHHHHHhhCCCccceEEEEEecccCccc
Confidence 100 001233444444 43454 37999999999986
No 172
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.80 E-value=4.4e-19 Score=128.14 Aligned_cols=119 Identities=14% Similarity=0.154 Sum_probs=80.5
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccc---------
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPL--------- 75 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~--------- 75 (168)
..++|+++|.+|+|||||+|+|++..+.. .+.++. .......+......+.+|||||...+..+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG--PRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCC--SSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcc--eeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 57999999999999999999999877532 212221 11222333334567888999998776543321
Q ss_pred cccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCC-C--CcEEEEeeCCcccccc
Q 030961 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-G--VPVVLVGTKLDLREDK 128 (168)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~-~--~p~ivv~nK~D~~~~~ 128 (168)
....+|++++|+|++.. ++......|+..+.+... + .|+++|+||+|+...+
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 12469999999988653 344333467777766532 2 6999999999997553
No 173
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.80 E-value=2.1e-20 Score=137.00 Aligned_cols=125 Identities=18% Similarity=0.149 Sum_probs=103.3
Q ss_pred HHHHHHhcCCCC-CCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChh-HHHHHHH
Q 030961 23 CMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLK 100 (168)
Q Consensus 23 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~ 100 (168)
+++.+++.+.|. ..+.+|+++.+...+..++ .+.+||+ +++++.+++.+++++|++++|||++++. ++..+ +
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence 588889888888 8889999977665433333 6889999 9999999999999999999999999987 67776 8
Q ss_pred hHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhC--CcEEEEecccCccCC
Q 030961 101 KWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--ASYYIECSSKTQQVC 168 (168)
Q Consensus 101 ~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i 168 (168)
.|+..+.. .++|+++|+||+|+.+.+. + +++++++..++ . +++++||++|.||
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~~~~----------v--~~~~~~~~~~~~~~-~~~~~SAktg~gv 160 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYDEDD----------L--RKVRELEEIYSGLY-PIVKTSAKTGMGI 160 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCCHHH----------H--HHHHHHHHHHTTTS-CEEECCTTTCTTH
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCCchh----------H--HHHHHHHHHHhhhC-cEEEEECCCCcCH
Confidence 89887765 5799999999999976543 2 55777777777 6 8999999999985
No 174
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.78 E-value=2.5e-19 Score=134.62 Aligned_cols=136 Identities=10% Similarity=0.022 Sum_probs=92.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccccccccccCCcEEEEEEeC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (168)
+|+++|++++|||||+++|+. ..++.... ...+......+.+|||||+++|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~-~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDIT-MYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------EEEESSSE-EEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHh--------CCEEEEee-EEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 899999999999999999971 11111111 11233334568889999999998777778899999999999
Q ss_pred CChhHHHHHHHhHHHHHchhCCCCcE-EEEee-CCcccccchhhhcCCCCCcccHHHHHHHHHHhC--CcEEEE--eccc
Q 030961 90 VSRASYENVLKKWIPELQHYSPGVPV-VLVGT-KLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--ASYYIE--CSSK 163 (168)
Q Consensus 90 ~~~~s~~~~~~~~~~~l~~~~~~~p~-ivv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~Sa~ 163 (168)
++.. .... .+++..+... ++|. ++++| |+|+ ..+. . ....++.+++...++ ..++++ +||+
T Consensus 93 ~~g~-~~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~-~-------~~~~~~i~~~l~~~~~~~~~ii~~~~SA~ 159 (370)
T 2elf_A 93 PQGL-DAHT-GECIIALDLL--GFKHGIIALTRSDST-HMHA-I-------DELKAKLKVITSGTVLQDWECISLNTNKS 159 (370)
T ss_dssp TTCC-CHHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CHHH-H-------HHHHHHHHHHTTTSTTTTCEEEECCCCTT
T ss_pred CCCC-cHHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CHHH-H-------HHHHHHHHHHHHhcCCCceEEEecccccc
Confidence 5433 3333 4555555543 5677 88899 9999 4322 0 012245566655443 248999 9999
Q ss_pred C---ccCC
Q 030961 164 T---QQVC 168 (168)
Q Consensus 164 ~---~~~i 168 (168)
+ |+||
T Consensus 160 ~~~~g~gi 167 (370)
T 2elf_A 160 AKNPFEGV 167 (370)
T ss_dssp SSSTTTTH
T ss_pred cCcCCCCH
Confidence 9 8874
No 175
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.78 E-value=1.3e-18 Score=135.93 Aligned_cols=147 Identities=12% Similarity=0.069 Sum_probs=96.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCC--CCCC--------CCCc----------eeece-eEEEEECCeEEEEEEEeCC
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNK--FPTD--------YIPT----------VFDNF-SANVVAEGTTVNLGLWDTA 64 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~--~~~~--------~~~~----------~~~~~-~~~~~~~~~~~~~~i~D~~ 64 (168)
.+..+|+++|++++|||||+++|+... +... ...+ .+... .....+....+.+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 468899999999999999999998632 1000 0001 01111 1112233334678889999
Q ss_pred CCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHH
Q 030961 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 144 (168)
Q Consensus 65 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 144 (168)
|+..|...+...++.+|++++|+|++++..... ..+...+.. .++|+++++||+|+.... ..+.
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~--~~ipiivviNK~Dl~~~~------------~~~~ 154 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRL--RDTPILTFMNKLDRDIRD------------PMEL 154 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTT--TTCCEEEEEECTTSCCSC------------HHHH
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHH--cCCCEEEEEcCcCCcccc------------HHHH
Confidence 999998888889999999999999988654332 334444443 468999999999997653 1334
Q ss_pred HHHHHHHhCCc----EEEEecccCccCC
Q 030961 145 GEELRKQIGAS----YYIECSSKTQQVC 168 (168)
Q Consensus 145 ~~~~~~~~~~~----~~~~~Sa~~~~~i 168 (168)
..++...++.. .+...|++++.||
T Consensus 155 ~~~i~~~l~~~~~~~~~pi~sa~~~~Gv 182 (529)
T 2h5e_A 155 LDEVENELKIGCAPITWPIGCGKLFKGV 182 (529)
T ss_dssp HHHHHHHHCCEEEESEEEESCGGGCCEE
T ss_pred HHHHHHHhCCCccceecceecccCccee
Confidence 55566666651 1223678877764
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.77 E-value=4.3e-19 Score=146.93 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=100.4
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC-------CCC--CCC-----Cceeecee-EEEEECCeEEEEEEEeCCCCccc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK-------FPT--DYI-----PTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDY 69 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~-------~~~--~~~-----~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~ 69 (168)
..+.++|+++|++++|||||+++|.+.. +.. ..+ .+.+.+.. ..+.++.....+.+|||||++.|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3457899999999999999999998631 100 000 11111111 11233444567888999999999
Q ss_pred cccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCc-EEEEeeCCcccccchhhhcCCCCCcccHHHHHHH
Q 030961 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 148 (168)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (168)
...+...++.+|++++|+|++++...+. .+++..+... ++| +++++||+|+...... .....++...+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QT--rEhL~ll~~l--gIP~IIVVINKiDLv~d~e~-------le~i~eEi~el 441 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQT--REHILLGRQV--GVPYIIVFLNKCDMVDDEEL-------LELVEMEVREL 441 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTH--HHHHHHHHHH--TCSCEEEEEECCTTCCCHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHH--HHHHHHHHHc--CCCeEEEEEeecccccchhh-------HHHHHHHHHHH
Confidence 8887888999999999999988654333 3444444442 578 7899999999753210 00234567777
Q ss_pred HHHhCC----cEEEEecccCc
Q 030961 149 RKQIGA----SYYIECSSKTQ 165 (168)
Q Consensus 149 ~~~~~~----~~~~~~Sa~~~ 165 (168)
+..+++ .+++++||++|
T Consensus 442 Lk~~G~~~~~vp~IpvSAktG 462 (1289)
T 3avx_A 442 LSQYDFPGDDTPIVRGSALKA 462 (1289)
T ss_dssp HHHTTSCTTTCCEEECCSTTT
T ss_pred HHhccccccceeEEEEEeccC
Confidence 777763 48999999998
No 177
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.77 E-value=2.4e-19 Score=134.48 Aligned_cols=148 Identities=18% Similarity=0.146 Sum_probs=94.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeec---------------ee-------------------------
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN---------------FS------------------------- 46 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~---------------~~------------------------- 46 (168)
..++|+++|++|||||||+++|.+..+......+.+.. +.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 45599999999999999999999987633222221100 00
Q ss_pred -------------EEEEE-CCeEEEEEEEeCCCCccc-------------cccccccccCCcEEEEEEeCCChhHHHHHH
Q 030961 47 -------------ANVVA-EGTTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFVLAFSLVSRASYENVL 99 (168)
Q Consensus 47 -------------~~~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 99 (168)
..+.+ ......+.+|||||...+ ..+...++.+++++++|++.++........
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 00111 111235788999998776 445566788999999999876543322111
Q ss_pred HhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCccC
Q 030961 100 KKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQV 167 (168)
Q Consensus 100 ~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (168)
..++..+.. .+.|+++|+||+|+..... ...+.++.+...++. +|+++|++++.|
T Consensus 193 ~~l~~~~~~--~~~~~i~V~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~s~~~ 247 (360)
T 3t34_A 193 IKISREVDP--SGDRTFGVLTKIDLMDKGT----------DAVEILEGRSFKLKY-PWVGVVNRSQAD 247 (360)
T ss_dssp HHHHHHSCT--TCTTEEEEEECGGGCCTTC----------CSHHHHTTSSSCCSS-CCEEECCCCHHH
T ss_pred HHHHHHhcc--cCCCEEEEEeCCccCCCcc----------cHHHHHcCccccccC-CeEEEEECChHH
Confidence 233333332 4689999999999986543 334444444555666 789999998765
No 178
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.76 E-value=1.5e-18 Score=120.59 Aligned_cols=148 Identities=15% Similarity=-0.002 Sum_probs=88.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccc----------ccccc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY----------NRLRP 74 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~----------~~~~~ 74 (168)
....+++++|++|||||||++++.+..+...+.++.+..+ ...+.+++ .+.+|||||.... .....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 3567899999999999999999998764444344444333 22233333 4678999997431 11112
Q ss_pred ccc---cCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHH
Q 030961 75 LSY---RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151 (168)
Q Consensus 75 ~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (168)
.++ ..++++++++|++++.+... ..+...+.. .+.|+++++||+|+...... ....+.+..++..
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~--~~~~~~~v~nK~D~~s~~~~--------~~~~~~~~~~~~~ 168 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVD--SNIAVLVLLTKADKLASGAR--------KAQLNMVREAVLA 168 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHH--TTCCEEEEEECGGGSCHHHH--------HHHHHHHHHHHGG
T ss_pred HHHHhhhcccEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEecccCCCchhH--------HHHHHHHHHHHHh
Confidence 222 46899999999988665432 122222322 36899999999998654210 0123456666655
Q ss_pred hC-CcEEEEecccCccCC
Q 030961 152 IG-ASYYIECSSKTQQVC 168 (168)
Q Consensus 152 ~~-~~~~~~~Sa~~~~~i 168 (168)
.+ ...++++||+++.|+
T Consensus 169 ~~~~~~~~~~Sal~~~~~ 186 (210)
T 1pui_A 169 FNGDVQVETFSSLKKQGV 186 (210)
T ss_dssp GCSCEEEEECBTTTTBSH
T ss_pred cCCCCceEEEeecCCCCH
Confidence 54 347889999999874
No 179
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.76 E-value=4.8e-18 Score=128.62 Aligned_cols=84 Identities=19% Similarity=0.205 Sum_probs=47.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeceeE-EE-------------------EECC-eEEEEEEEeCCC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDNFSA-NV-------------------VAEG-TTVNLGLWDTAG 65 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~-~~-------------------~~~~-~~~~~~i~D~~g 65 (168)
++|+++|.||+|||||+|+|.+........+ |....... .+ .+++ ...++.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998763222222 11111111 11 1232 257899999999
Q ss_pred Ccc----cccccc---ccccCCcEEEEEEeCCCh
Q 030961 66 QED----YNRLRP---LSYRGADVFVLAFSLVSR 92 (168)
Q Consensus 66 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~ 92 (168)
... ...+.. ..++.+|++++|+|++++
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222333 456899999999999875
No 180
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.76 E-value=2.8e-18 Score=137.45 Aligned_cols=117 Identities=18% Similarity=0.106 Sum_probs=83.7
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce----------------eece-eEEEEECCeEEEEEEEeCCCCc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV----------------FDNF-SANVVAEGTTVNLGLWDTAGQE 67 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~----------------~~~~-~~~~~~~~~~~~~~i~D~~g~~ 67 (168)
..+..+++++|+.|+|||||+++|++.........++ +..+ .....+....+.+.+|||||++
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 3567889999999999999999998533211111110 1111 2223333345778899999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccc
Q 030961 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125 (168)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~ 125 (168)
.|...+...++.+|++++|+|+.+...... ..++..+.. .++|+++++||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt--~~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGT--ERAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHHH--TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhH--HHHHHHHHH--ccCCEEEEecCCchh
Confidence 998888889999999999999887655544 345555544 368999999999987
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.74 E-value=8.2e-18 Score=135.27 Aligned_cols=117 Identities=16% Similarity=0.105 Sum_probs=83.3
Q ss_pred CcceeeEEEEECCCCCCHHHHHHHHhcC--CCC------C------------CCCCceeeceeEEEEECCeEEEEEEEeC
Q 030961 4 SASRFIKCVTVGDGAVGKTCMLICYTSN--KFP------T------------DYIPTVFDNFSANVVAEGTTVNLGLWDT 63 (168)
Q Consensus 4 ~~~~~~~i~vvG~~~~GKStli~~l~~~--~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 63 (168)
...+..+|+++|++++|||||+++|+.. .+. . ....|+. . ....+....+.+.+|||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~--~-~~~~~~~~~~~i~liDT 84 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT--A-AVTTCFWKDHRINIIDT 84 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------C-CEEEEEETTEEEEEECC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc--c-ceEEEEECCeEEEEEEC
Confidence 3467899999999999999999999842 110 0 0011111 1 11112222467888999
Q ss_pred CCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 64 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
||+..|...+...++.+|++++|+|+++..+.... ..|.. +.+ .++|+++++||+|+...
T Consensus 85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~-~~~--~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQ-AEK--YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHH--TTCCEEEEEECTTSTTC
T ss_pred cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHH-HHH--cCCCEEEEEECCCcccC
Confidence 99999988888999999999999999998877764 44443 333 37899999999999764
No 182
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=127.23 Aligned_cols=147 Identities=14% Similarity=0.103 Sum_probs=84.5
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------CceeeceeEEE--EECCeEEEEEEEeCCCCccccc-----
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI--------PTVFDNFSANV--VAEGTTVNLGLWDTAGQEDYNR----- 71 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~i~D~~g~~~~~~----- 71 (168)
..++|+++|++|+|||||+++|++..+..... ++.... ...+ ...+....+.+||++|......
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~-~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVE-QSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEE-EEECC------CEEEEEEECC-----------C
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeee-eEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 45789999999999999999999876532211 111111 1111 2234446789999999765311
Q ss_pred --------------------cccccccCCcEEEEEEeCCCh-hHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchh
Q 030961 72 --------------------LRPLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 130 (168)
Q Consensus 72 --------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~ 130 (168)
+....+.++++.+++|..... .++......|+..+.. ++|+++|+||+|+...+.
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~---~v~iIlVinK~Dll~~~e- 184 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEE- 184 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT---TSEEEEEEESTTSSCHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc---cCcEEEEEEcccCccHHH-
Confidence 123345566655555554432 3455543467776653 689999999999976544
Q ss_pred hhcCCCCCcccH--HHHHHHHHHhCCcEEEEecccCccCC
Q 030961 131 LADHPGLVPVTT--AQGEELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 131 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
+.. +++...+...++ +++++||++++|+
T Consensus 185 ---------v~~~k~~i~~~~~~~~i-~~~~~sa~~~~~v 214 (418)
T 2qag_C 185 ---------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEE 214 (418)
T ss_dssp ---------HHHHHHHHHHHHHHHTC-CCCCCC-------
T ss_pred ---------HHHHHHHHHHHHHHcCC-eEEeCCCCCCcCH
Confidence 433 677888888887 8999999988764
No 183
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.73 E-value=1.2e-18 Score=128.19 Aligned_cols=69 Identities=23% Similarity=0.276 Sum_probs=46.6
Q ss_pred EEEEEEeCCCCcc-------------ccccccccccCCcEEEEEEeCCChh-HHHHHHHhHHHHHchhCCCCcEEEEeeC
Q 030961 56 VNLGLWDTAGQED-------------YNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTK 121 (168)
Q Consensus 56 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~p~ivv~nK 121 (168)
..+.+|||||... +......++..+|++++|+|.++.. ..... ..+...+.. .+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~-~~i~~~~~~--~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDP--EGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCS--SCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH-HHHHHHhCC--CCCcEEEEEcC
Confidence 4688899999753 3345556778999999999974332 11111 234444443 46899999999
Q ss_pred Cccccc
Q 030961 122 LDLRED 127 (168)
Q Consensus 122 ~D~~~~ 127 (168)
+|+...
T Consensus 208 ~Dl~~~ 213 (315)
T 1jwy_B 208 LDLMDK 213 (315)
T ss_dssp TTSSCS
T ss_pred cccCCc
Confidence 999754
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.73 E-value=2.2e-17 Score=132.90 Aligned_cols=119 Identities=13% Similarity=0.170 Sum_probs=81.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcee----ece----eEEEEE-------------------------
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVF----DNF----SANVVA------------------------- 51 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~----~~~----~~~~~~------------------------- 51 (168)
...++|+++|.+|+|||||+|+|++..+.. ...++.. ..+ ..+...
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 357899999999999999999999876432 2222220 000 001110
Q ss_pred ---------------------CCeE--EEEEEEeCCCCcc---ccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHH
Q 030961 52 ---------------------EGTT--VNLGLWDTAGQED---YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE 105 (168)
Q Consensus 52 ---------------------~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 105 (168)
+... ..+.+|||||... .......+++.+|++++|+|++++.+.... ..|...
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHH
Confidence 0000 2578899999654 334556678899999999999988887775 566555
Q ss_pred HchhCCCCcEEEEeeCCccccc
Q 030961 106 LQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 106 l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
+.. .+.|+++|+||+|+...
T Consensus 226 l~~--~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 226 IKG--RGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TTT--SCCCEEEEEECGGGGGG
T ss_pred HHh--hCCCEEEEEECcccccc
Confidence 554 35789999999999754
No 185
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.72 E-value=2.4e-18 Score=126.02 Aligned_cols=149 Identities=13% Similarity=0.087 Sum_probs=78.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC-CCCCCC--------CCceeece-eEEEEECCeEEEEEEEeCCCC-------cc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSN-KFPTDY--------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQ-------ED 68 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~-~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~-------~~ 68 (168)
...++|+++|++|+|||||++++.+. .+.... .++..... ......++....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 35689999999999999999998875 333322 11211111 112223455678999999998 44
Q ss_pred cccccc-------cccc-------------CCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccc
Q 030961 69 YNRLRP-------LSYR-------------GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (168)
Q Consensus 69 ~~~~~~-------~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~ 128 (168)
+..+.. .+++ .+++++++.+.+. .+++.....++..+ ..+.|+++|+||+|+...+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l---~~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH---TTTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH---HhcCCEEEEEEeCCCCCHH
Confidence 444433 2222 1333444444221 23444322333333 3468999999999997653
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCccCC
Q 030961 129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
. .....+++.+++..+++ +|+++||++| |+
T Consensus 172 e--------~~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v 201 (301)
T 2qnr_A 172 E--------RERLKKRILDEIEEHNI-KIYHLPDAES-DE 201 (301)
T ss_dssp H--------HHHHHHHHHHHHHHTTC-CCCCCC-------
T ss_pred H--------HHHHHHHHHHHHHHcCC-eEEecCCccc-cc
Confidence 3 01345678889999997 8999999998 75
No 186
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.72 E-value=3.6e-17 Score=122.39 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=77.2
Q ss_pred EEEEEEEeCCCCccccccccccccCCcEEEEEEeCCC----------hhHHHHHHHhHHHHHchh--CCCCcEEEEeeCC
Q 030961 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY--SPGVPVVLVGTKL 122 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~l~~~--~~~~p~ivv~nK~ 122 (168)
.+.+++|||+|++.++..|..+++++++++||||+++ ..++.+. ..|+..+... ..++|++|++||+
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es-~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHH-HHHHHHHhcchhhCCCCEEEEEECh
Confidence 4778889999999999999999999999999999999 7789888 5666666553 2689999999999
Q ss_pred cccccchhh----hcCCC--CCcccHHHHHHHHH-----------HhCCcEEEEecccCccCC
Q 030961 123 DLREDKHYL----ADHPG--LVPVTTAQGEELRK-----------QIGASYYIECSSKTQQVC 168 (168)
Q Consensus 123 D~~~~~~~~----~~~~~--~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~~i 168 (168)
|+..++... ...++ ..++..+++..++. ..++ .+++|||++++||
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~~tSA~d~~nV 340 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPL-YHHFTTAINTENI 340 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CC-EEEECCTTCHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEecCCchhH
Confidence 997543100 00011 11256778877762 2344 7899999999875
No 187
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.71 E-value=7.5e-17 Score=121.74 Aligned_cols=72 Identities=19% Similarity=0.293 Sum_probs=64.2
Q ss_pred EEEEEEeCCCCccccccccccccCCcEEEEEEeCCC----------hhHHHHHHHhHHHHHchhC--CCCcEEEEeeCCc
Q 030961 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHYS--PGVPVVLVGTKLD 123 (168)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~l~~~~--~~~p~ivv~nK~D 123 (168)
+.+++|||+|++.++.+|..++++++++++|||+++ ..++.++ ..|+..+.... .++|++|++||+|
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHhcccCCCCeEEEEEEChh
Confidence 788899999999999999999999999999999999 8999998 77888776642 6899999999999
Q ss_pred ccccc
Q 030961 124 LREDK 128 (168)
Q Consensus 124 ~~~~~ 128 (168)
+...+
T Consensus 296 L~~~k 300 (402)
T 1azs_C 296 LLAEK 300 (402)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 96543
No 188
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.70 E-value=8.6e-17 Score=122.19 Aligned_cols=143 Identities=16% Similarity=0.099 Sum_probs=92.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeceeE-EEEECCeEEEEEEEeCCCCccc----ccccccc---ccCCc
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDY----NRLRPLS---YRGAD 81 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~----~~~~~~~---~~~~~ 81 (168)
.++++|++|||||||++++.+........+..+..... .+..++ ...+.+||+||.... ..+...+ +..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 47999999999999999998864311111111111111 222332 245778999997432 2222222 34699
Q ss_pred EEEEEEeCCChhHHHHHHHhHHHHHchhC---CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCCcEEE
Q 030961 82 VFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 158 (168)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (168)
.++.++|++ +..+..+ ..+.+++..+. ...|.++++||+|+... . ..++..+.....+. +++
T Consensus 238 ~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-----------~~~~l~~~l~~~g~-~vi 302 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-----------AVKALADALAREGL-AVL 302 (416)
T ss_dssp EEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-----------HHHHHHHHHHTTTS-CEE
T ss_pred hhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-----------HHHHHHHHHHhcCC-eEE
Confidence 999999997 5556665 56666665543 36899999999998654 1 23445555555666 899
Q ss_pred EecccCccCC
Q 030961 159 ECSSKTQQVC 168 (168)
Q Consensus 159 ~~Sa~~~~~i 168 (168)
++||++++||
T Consensus 303 ~iSA~~g~gi 312 (416)
T 1udx_A 303 PVSALTGAGL 312 (416)
T ss_dssp ECCTTTCTTH
T ss_pred EEECCCccCH
Confidence 9999999885
No 189
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.70 E-value=7.3e-17 Score=129.80 Aligned_cols=117 Identities=16% Similarity=0.099 Sum_probs=82.9
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhc--CCCCCC-----------C-----CCceeece-eEEEEECCeEEEEEEEeCCC
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTS--NKFPTD-----------Y-----IPTVFDNF-SANVVAEGTTVNLGLWDTAG 65 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~--~~~~~~-----------~-----~~~~~~~~-~~~~~~~~~~~~~~i~D~~g 65 (168)
..+..+|+++|++|+|||||+++|+. +.+... + .+..+... ...+... .+.+.+|||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcC
Confidence 46788999999999999999999985 222110 0 00000011 1122223 46788899999
Q ss_pred CccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
+..|...+...++.+|++++|+|++++.+.... ..|. .+.+ .+.|+++++||+|+...
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~-~~~~--~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWR-QATT--YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHH-HHHH--TTCCEEEEEECTTSTTC
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHH-HHHH--cCCCEEEEEECCCcccc
Confidence 999988888899999999999999988777664 4443 3443 36899999999999764
No 190
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.69 E-value=6.9e-16 Score=124.32 Aligned_cols=118 Identities=16% Similarity=0.097 Sum_probs=83.3
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC--CCCCC-----------C-------CCceeeceeEEEEE-----CCeEEEEE
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD-----------Y-------IPTVFDNFSANVVA-----EGTTVNLG 59 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~--~~~~~-----------~-------~~~~~~~~~~~~~~-----~~~~~~~~ 59 (168)
..+..+|+++|+.++|||||+++|+.. .+... + ..|+.... ..+.. ++..+.+.
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA-TTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeece-EEEEECCccccCCceeEE
Confidence 456889999999999999999999753 11110 0 00111000 11222 23348899
Q ss_pred EEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 60 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
+|||||+..|...+...++.+|++++|+|+++....... ..| ..+.. .++|+++++||+|+...
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~-~~~~~--~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVW-RQANK--YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHH-HHHHH--cCCCEEEEEeCCCcccc
Confidence 999999999988888999999999999999987766553 334 33333 46899999999998754
No 191
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.68 E-value=7.8e-16 Score=114.79 Aligned_cols=82 Identities=22% Similarity=0.212 Sum_probs=54.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeceeEEEEECCe---------------EEEEEEEeCCCCcccc-
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDNFSANVVAEGT---------------TVNLGLWDTAGQEDYN- 70 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~- 70 (168)
++|+++|.||+|||||+|+|.+........+ |..... ..+.+++. ...+.+|||||...+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~-g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT-GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS-SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE-EEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 6899999999999999999998764322222 222111 12333332 2568899999987653
Q ss_pred ---ccccc---cccCCcEEEEEEeCCC
Q 030961 71 ---RLRPL---SYRGADVFVLAFSLVS 91 (168)
Q Consensus 71 ---~~~~~---~~~~~~~~i~v~d~~~ 91 (168)
.+... +++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 34333 3689999999999975
No 192
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.67 E-value=9.8e-17 Score=126.02 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=80.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCceeeceeEEE-------EEC-----------------------
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP---TDYIPTVFDNFSANV-------VAE----------------------- 52 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~-------~~~----------------------- 52 (168)
...++|+++|.+|+|||||+|+|++..+. ....++.. ...... ..+
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~-~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD-CFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC-SEEEEECCSSSEEECCC------------------CCCT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc-eEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 46789999999999999999999998763 22222221 110000 000
Q ss_pred CeE---------EEEEEEeCCCCcc-----------ccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCC
Q 030961 53 GTT---------VNLGLWDTAGQED-----------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG 112 (168)
Q Consensus 53 ~~~---------~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~ 112 (168)
+.. ..+.+|||||... +......++..+|++++|+|+++....... ..++..+.. .+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRG--HE 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTT--CG
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHh--cC
Confidence 000 2578999999764 234445567889999999999875444443 566666665 35
Q ss_pred CcEEEEeeCCcccccc
Q 030961 113 VPVVLVGTKLDLREDK 128 (168)
Q Consensus 113 ~p~ivv~nK~D~~~~~ 128 (168)
.|+++|+||+|+....
T Consensus 219 ~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQ 234 (550)
T ss_dssp GGEEEEEECGGGSCHH
T ss_pred CCEEEEEECCCccCHH
Confidence 7999999999997543
No 193
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.67 E-value=1.5e-16 Score=130.34 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=86.0
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC--CCCC--------------CCC--ceeece-eEEEE------------ECC
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK--FPTD--------------YIP--TVFDNF-SANVV------------AEG 53 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~~~--~~~~--------------~~~--~~~~~~-~~~~~------------~~~ 53 (168)
.....+|+++|+.++|||||+++|+... .... ... |+.... ..... .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4567899999999999999999998641 1100 001 111111 11111 244
Q ss_pred eEEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccc
Q 030961 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (168)
Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~ 126 (168)
..+.+.+|||||+..|...+...++.+|++++|+|++++.++... ..|..... .++|+++++||+|+..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~---~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG---ERIKPVVVINKVDRAL 164 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCEEEEEEECHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCeEEEEECCCcch
Confidence 578999999999999999999999999999999999998888775 45554433 3689999999999873
No 194
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.67 E-value=2.5e-17 Score=123.17 Aligned_cols=149 Identities=20% Similarity=0.172 Sum_probs=85.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC------CCCcee--------------------ecee--------------
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTD------YIPTVF--------------------DNFS-------------- 46 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~------~~~~~~--------------------~~~~-------------- 46 (168)
..++|+++|.+++|||||+++|++.++... ..|+.. .++.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 467999999999999999999999876321 112210 0000
Q ss_pred ----------EEEEEC-CeEEEEEEEeCCCCcc-------------ccccccccccCCc-EEEEEEeCCChhHHHHHHHh
Q 030961 47 ----------ANVVAE-GTTVNLGLWDTAGQED-------------YNRLRPLSYRGAD-VFVLAFSLVSRASYENVLKK 101 (168)
Q Consensus 47 ----------~~~~~~-~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~ 101 (168)
..+.+. .....+.+|||||... +..+...++..++ +++++.+++....-... ..
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HH
Confidence 011111 1135688999999632 2334555565555 55556666543322222 23
Q ss_pred HHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHH--HHHHHhCCcEEEEecccCccCC
Q 030961 102 WIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE--ELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 102 ~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
++..+.. .+.|+++|+||+|+..... ...+..+ .+....++.+++++||+++.|+
T Consensus 189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i 245 (353)
T 2x2e_A 189 VAKEVDP--QGQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGK 245 (353)
T ss_dssp HHHHHCT--TCTTEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCHHHHHTT
T ss_pred HHHHhCc--CCCceEEEeccccccCcch----------hHHHHHhCCcccccCCceEEEeCCccccccc
Confidence 4444443 4689999999999975432 1111111 0111124446788999998875
No 195
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.62 E-value=7.6e-18 Score=118.33 Aligned_cols=141 Identities=16% Similarity=0.066 Sum_probs=79.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-------------EEEEEC-CeEE----------------
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-------------ANVVAE-GTTV---------------- 56 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~---------------- 56 (168)
+.++|+++|.+|||||||+++|+...+...+.+++..++. ..+.++ +..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999987554444444443332 222222 1111
Q ss_pred ---EEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhc
Q 030961 57 ---NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 133 (168)
Q Consensus 57 ---~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~ 133 (168)
.+.++|++|.-.... .+-...+..+.+.|+.+...... .....+ ..|.++++||+|+...+.
T Consensus 117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~---~~~~~~-----~~~~iiv~NK~Dl~~~~~---- 181 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE---KHPGIM-----KTADLIVINKIDLADAVG---- 181 (226)
T ss_dssp GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT---TCHHHH-----TTCSEEEEECGGGHHHHT----
T ss_pred CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh---hhhhHh-----hcCCEEEEeccccCchhH----
Confidence 344455554211000 01112334455566422111100 011111 367899999999975432
Q ss_pred CCCCCcccHHHHHHHHHHhC-CcEEEEecccCccCC
Q 030961 134 HPGLVPVTTAQGEELRKQIG-ASYYIECSSKTQQVC 168 (168)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i 168 (168)
...+++..++..++ ..+++++||++|+||
T Consensus 182 ------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 211 (226)
T 2hf9_A 182 ------ADIKKMENDAKRINPDAEVVLLSLKTMEGF 211 (226)
T ss_dssp ------CCHHHHHHHHHHHCTTSEEEECCTTTCTTH
T ss_pred ------HHHHHHHHHHHHhCCCCeEEEEEecCCCCH
Confidence 45666777776653 238999999999985
No 196
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.60 E-value=2e-15 Score=105.61 Aligned_cols=141 Identities=17% Similarity=0.068 Sum_probs=83.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece------------e-EEEEECC------------------eE
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF------------S-ANVVAEG------------------TT 55 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~------------~-~~~~~~~------------------~~ 55 (168)
...+++++|.+|+|||||+++|............+..++ . ....++. ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 467899999999999999999986522111011111000 0 0011111 23
Q ss_pred EEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCC
Q 030961 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 135 (168)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 135 (168)
+.+.+|||+|+..... .+....+.+++|+|+.+.... . ..+...+ +.|.++++||+|+.....
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~-~~~~~~~-----~~~~iiv~NK~Dl~~~~~------ 171 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--V-EKHPEIF-----RVADLIVINKVALAEAVG------ 171 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--H-HHCHHHH-----HTCSEEEEECGGGHHHHT------
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--h-hhhhhhh-----hcCCEEEEecccCCcchh------
Confidence 5677899998511111 111256789999998765421 1 1122211 478999999999965422
Q ss_pred CCCcccHHHHHHHHHHhC-CcEEEEecccCccCC
Q 030961 136 GLVPVTTAQGEELRKQIG-ASYYIECSSKTQQVC 168 (168)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i 168 (168)
...++....+...+ ..+++++||++|+|+
T Consensus 172 ----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi 201 (221)
T 2wsm_A 172 ----ADVEKMKADAKLINPRAKIIEMDLKTGKGF 201 (221)
T ss_dssp ----CCHHHHHHHHHHHCTTSEEEECBTTTTBTH
T ss_pred ----hHHHHHHHHHHHhCCCCeEEEeecCCCCCH
Confidence 34555666665543 238999999999985
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.58 E-value=1.9e-14 Score=107.79 Aligned_cols=82 Identities=20% Similarity=0.177 Sum_probs=53.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeceeEEEEECC-------------------eEEEEEEEeCCCCc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDNFSANVVAEG-------------------TTVNLGLWDTAGQE 67 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~ 67 (168)
++|+++|.||+|||||+|++.+........+ |+..... ...+++ ....+.+|||||..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g-~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG-VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE-EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee-eEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 5799999999999999999987642111111 1111111 111221 23578899999987
Q ss_pred cccc----ccc---ccccCCcEEEEEEeCCC
Q 030961 68 DYNR----LRP---LSYRGADVFVLAFSLVS 91 (168)
Q Consensus 68 ~~~~----~~~---~~~~~~~~~i~v~d~~~ 91 (168)
.... +.. ..++.+|++++|+|+++
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 6532 222 23689999999999975
No 198
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.55 E-value=3e-15 Score=112.03 Aligned_cols=95 Identities=14% Similarity=0.024 Sum_probs=57.9
Q ss_pred EEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcC
Q 030961 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 134 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 134 (168)
.+.+.+|||||... .....+..+|++++|+|....+.+..+ .....+.|+++|+||+|+.......
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l--------~~~~~~~p~ivVlNK~Dl~~~~~~~--- 236 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI--------KKGVLELADIVVVNKADGEHHKEAR--- 236 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC--------CTTSGGGCSEEEEECCCGGGHHHHH---
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH--------HHhHhhcCCEEEEECCCCcChhHHH---
Confidence 36788899999432 122235789999999998765544322 1111246899999999996543200
Q ss_pred CCCCcccHHHHHHHHHHh-----CC-cEEEEecccCccCC
Q 030961 135 PGLVPVTTAQGEELRKQI-----GA-SYYIECSSKTQQVC 168 (168)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~-----~~-~~~~~~Sa~~~~~i 168 (168)
...++........ ++ .+++++||++|+||
T Consensus 237 -----~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi 271 (355)
T 3p32_A 237 -----LAARELSAAIRLIYPREALWRPPVLTMSAVEGRGL 271 (355)
T ss_dssp -----HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSH
T ss_pred -----HHHHHHHHHHhhccccccCCCCceEEEEcCCCCCH
Confidence 1112222222222 11 37999999999985
No 199
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.48 E-value=7.4e-15 Score=109.59 Aligned_cols=91 Identities=15% Similarity=0.068 Sum_probs=50.3
Q ss_pred EEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCC
Q 030961 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 135 (168)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 135 (168)
+.+.++||+|.... .......+|++++|+|++++...... . ..+ -+.|.++++||+|+.....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~---~~i----l~~~~ivVlNK~Dl~~~~~------ 229 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-K---RGI----IEMADLVAVTKSDGDLIVP------ 229 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH------
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-H---HHH----HhcCCEEEEeeecCCCchh------
Confidence 56788999995311 12235689999999999876533222 1 111 1357899999999964321
Q ss_pred CCCcccHHHHHHHHHHh---------CCcEEEEecccCccCC
Q 030961 136 GLVPVTTAQGEELRKQI---------GASYYIECSSKTQQVC 168 (168)
Q Consensus 136 ~~~~~~~~~~~~~~~~~---------~~~~~~~~Sa~~~~~i 168 (168)
. ......+.... ...+++++||++|+|+
T Consensus 230 ----~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi 266 (349)
T 2www_A 230 ----A-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGI 266 (349)
T ss_dssp ----H-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTH
T ss_pred ----H-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCH
Confidence 0 11122222111 1237899999999985
No 200
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.48 E-value=6.4e-14 Score=112.93 Aligned_cols=150 Identities=19% Similarity=0.139 Sum_probs=88.3
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcee--e---------ce----------------------------
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVF--D---------NF---------------------------- 45 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~--~---------~~---------------------------- 45 (168)
...++|+|+|.+++|||||+|.|++..+ +.....+.. . .+
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3467999999999999999999999775 211110000 0 00
Q ss_pred ----------eEEEEE-CCeEEEEEEEeCCCCccc-------------cccccccc-cCCcEEEEEEeCCChhHHHHHHH
Q 030961 46 ----------SANVVA-EGTTVNLGLWDTAGQEDY-------------NRLRPLSY-RGADVFVLAFSLVSRASYENVLK 100 (168)
Q Consensus 46 ----------~~~~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~ 100 (168)
...+.+ ......+.++||||-... ..+...++ ..+|++++|+|+++...-... .
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-L 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-H
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-H
Confidence 000111 011124678999995441 11222333 578999999999875443332 2
Q ss_pred hHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHH--HHHHhCCcEEEEecccCccCC
Q 030961 101 KWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE--LRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 101 ~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i 168 (168)
.++..+.. .+.|+++|+||+|+..... ........ +....++.+++.+||++|.|+
T Consensus 208 ~ll~~L~~--~g~pvIlVlNKiDlv~~~~----------~~~~il~~~~~~l~lg~~~VV~iSA~~G~Gv 265 (772)
T 3zvr_A 208 KIAKEVDP--QGQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGK 265 (772)
T ss_dssp HHHHHHCT--TCSSEEEEEECTTSSCTTC----------CSHHHHTTCSSCCSSCEEECCCCCCEESSSS
T ss_pred HHHHHHHh--cCCCEEEEEeCcccCCcch----------hhHHHHHHHhhhhhccCCceEEecccccccc
Confidence 45555554 4689999999999976532 11111110 000124446788999999985
No 201
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.45 E-value=5e-13 Score=104.98 Aligned_cols=132 Identities=11% Similarity=0.027 Sum_probs=89.9
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC--CC-------------CCCCCce-----eece-eEEEEECCeEEEEEEEeCCC
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNK--FP-------------TDYIPTV-----FDNF-SANVVAEGTTVNLGLWDTAG 65 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~--~~-------------~~~~~~~-----~~~~-~~~~~~~~~~~~~~i~D~~g 65 (168)
+.-+|+++|+.++|||||..+|+... .. ...+... +... ...+......+.+.++||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 56789999999999999999986321 00 0000000 0011 11122233456788899999
Q ss_pred CccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHH
Q 030961 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG 145 (168)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
+..|.......++-+|++++|+|+..+-..+.. .-| +++.+ .++|.++++||+|....+. .+-.
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~-~~a~~--~~lp~i~fINK~Dr~~ad~------------~~~~ 173 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLM-DVCRM--RATPVMTFVNKMDREALHP------------LDVM 173 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHH-HHHHH--TTCCEEEEEECTTSCCCCH------------HHHH
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHH-HHHHH--hCCceEEEEecccchhcch------------hHhh
Confidence 999999999999999999999999988777664 444 44444 3699999999999876642 3444
Q ss_pred HHHHHHhCC
Q 030961 146 EELRKQIGA 154 (168)
Q Consensus 146 ~~~~~~~~~ 154 (168)
.++...++.
T Consensus 174 ~~i~~~l~~ 182 (548)
T 3vqt_A 174 ADIEQHLQI 182 (548)
T ss_dssp HHHHHHHTS
T ss_pred hhhhhhcCC
Confidence 555555655
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.45 E-value=2e-13 Score=97.77 Aligned_cols=69 Identities=17% Similarity=-0.000 Sum_probs=41.8
Q ss_pred EEEEEEeCCCCcccccccc------ccccCCcEEEEEEeCCCh---hHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccc
Q 030961 56 VNLGLWDTAGQEDYNRLRP------LSYRGADVFVLAFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (168)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~ 126 (168)
+.+.+|||||......... ..+.. +++++++|+... ..+............. .+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccc
Confidence 5788999999876533221 13355 888889887543 3333221111111111 3689999999999875
Q ss_pred c
Q 030961 127 D 127 (168)
Q Consensus 127 ~ 127 (168)
.
T Consensus 186 ~ 186 (262)
T 1yrb_A 186 E 186 (262)
T ss_dssp H
T ss_pred c
Confidence 4
No 203
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.44 E-value=4.2e-13 Score=98.28 Aligned_cols=89 Identities=17% Similarity=0.104 Sum_probs=72.8
Q ss_pred CccccccccccccCCcEEEEEEeCCChh-HHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCccc-HH
Q 030961 66 QEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT-TA 143 (168)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~ 143 (168)
++++..+.+.+++++|++++|+|++++. ++..+ +.|+..+.. .++|+++|+||+|+.+... +. .+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~--~~~~~ilV~NK~DL~~~~~----------v~~~~ 132 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEY--FKVEPVIVFNKIDLLNEEE----------KKELE 132 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHH--TTCEEEEEECCGGGCCHHH----------HHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHh--CCCCEEEEEEcccCCCccc----------cHHHH
Confidence 7778888888999999999999999986 88876 788887766 5799999999999975532 22 45
Q ss_pred HHHHHHHHhCCcEEEEecccCccCC
Q 030961 144 QGEELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 144 ~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
+...+.+..+. +++++||++|+|+
T Consensus 133 ~~~~~~~~~g~-~~~~~SA~~g~gi 156 (302)
T 2yv5_A 133 RWISIYRDAGY-DVLKVSAKTGEGI 156 (302)
T ss_dssp HHHHHHHHTTC-EEEECCTTTCTTH
T ss_pred HHHHHHHHCCC-eEEEEECCCCCCH
Confidence 56666777787 8999999999985
No 204
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.9e-12 Score=97.01 Aligned_cols=141 Identities=12% Similarity=0.043 Sum_probs=84.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCeEEEEEEEeCCCCccccc----ccc---cccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR----LRP---LSYR 78 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~---~~~~ 78 (168)
...+|.+||.||+|||||+|+|.+.+......+-.+.+. ...+.+++. +++++||||...-.. +.. ..++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 356899999999999999999998764333233222222 234455554 566799999643211 111 2356
Q ss_pred CCcEEEEEEeCCChhHHHHHHHhHHHHHchhC---CCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHHHHhCC
Q 030961 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 154 (168)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (168)
.+|++++|+|++++..-.. .+..+|.... .+.|.+++.||.|...... ...........++.+.+...+.+
T Consensus 149 ~ad~il~vvD~~~p~~~~~---~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i--~~~~~~~~l~~eeik~il~~~~l 222 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLHHKQ---IIEKELEGVGIRLNKTPPDILIKKKEKGGISI--TNTVPLTHLGNDEIRAVMSEYRI 222 (376)
T ss_dssp HCSEEEEEEETTSHHHHHH---HHHHHHHHTTEEETCCCCCEEEEECSSSCEEE--EESSCCSSCCHHHHHHHHHHTTC
T ss_pred hcCccccccccCccHHHHH---HHHHHHHHhhHhhccCChhhhhhHhhhhhhhh--hcchhhhhccHHHHHHHHHHhcc
Confidence 8999999999998754332 2333333322 4678889999999753321 11111122455666666555544
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.41 E-value=1.9e-14 Score=107.11 Aligned_cols=93 Identities=15% Similarity=0.091 Sum_probs=54.7
Q ss_pred EEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcC
Q 030961 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 134 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 134 (168)
.+.+.+|||||....... ....+|++++|+|++....+..+ .... .+.|.++|+||+|+.....
T Consensus 148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l----~~~~----~~~p~ivv~NK~Dl~~~~~----- 211 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGI----KKGL----MEVADLIVINKDDGDNHTN----- 211 (341)
T ss_dssp TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCC----CHHH----HHHCSEEEECCCCTTCHHH-----
T ss_pred CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHH----HHhh----hcccCEEEEECCCCCChHH-----
Confidence 357889999996543222 35789999999998765432211 0011 1368899999999965422
Q ss_pred CCCCccc--HHHHHHHHHHhC------CcEEEEecccCccCC
Q 030961 135 PGLVPVT--TAQGEELRKQIG------ASYYIECSSKTQQVC 168 (168)
Q Consensus 135 ~~~~~~~--~~~~~~~~~~~~------~~~~~~~Sa~~~~~i 168 (168)
.. .++.+.....++ ..+++++||++|+|+
T Consensus 212 -----~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi 248 (341)
T 2p67_A 212 -----VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGI 248 (341)
T ss_dssp -----HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSH
T ss_pred -----HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCH
Confidence 11 112232222222 247899999999985
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.37 E-value=4.8e-12 Score=102.30 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=81.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC--------CCCCCCCCc--eeeceeEEE---------EEC-----CeEEEEEEE
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSN--------KFPTDYIPT--VFDNFSANV---------VAE-----GTTVNLGLW 61 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~--------~~~~~~~~~--~~~~~~~~~---------~~~-----~~~~~~~i~ 61 (168)
+++-+|+++|+.++|||||..+|+.. ........+ ...+....+ ... ...+.+.++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 56778999999999999999998732 111100000 000111111 111 235789999
Q ss_pred eCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccc
Q 030961 62 DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (168)
Q Consensus 62 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~ 128 (168)
||||+..|.......++-+|++++|+|+..+-..+.. .-|.+.... ++|.++++||+|....+
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~---~lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKY---GVPRIVYVNKMDRQGAN 153 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHH---TCCEEEEEECSSSTTCC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHc---CCCeEEEEccccccCcc
Confidence 9999999999999999999999999999988766653 334444333 69999999999987653
No 207
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.36 E-value=9.6e-14 Score=110.90 Aligned_cols=116 Identities=16% Similarity=0.080 Sum_probs=80.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc--CCCCCC---CCC-ce----------eece-eEEEEECCeEEEEEEEeCCCCcccc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS--NKFPTD---YIP-TV----------FDNF-SANVVAEGTTVNLGLWDTAGQEDYN 70 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~--~~~~~~---~~~-~~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~ 70 (168)
+-+|+++|+.++|||||..+|+. +..... ... +. +.+. ..........+.+.++||||+..|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 45799999999999999999873 211110 000 00 0111 1122234445678889999999999
Q ss_pred ccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
......++-+|++++|+|+...-..+.. .-| .++.+. ++|.++++||+|....
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~-~~a~~~--~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTR-ILF-HALRKM--GIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHH-HHH-HHHHHH--TCSCEECCEECCSSSC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHH-HHH-HHHHHc--CCCeEEEEeccccccC
Confidence 9999999999999999999987665553 334 444442 6899999999998654
No 208
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.35 E-value=6.6e-13 Score=99.98 Aligned_cols=88 Identities=16% Similarity=0.073 Sum_probs=49.0
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeece-eEEEEECCe---------------EEEEEEEeCCCCcccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGT---------------TVNLGLWDTAGQEDYN 70 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~---------------~~~~~i~D~~g~~~~~ 70 (168)
..++++++|.+|+|||||+|++.+..+.....+..+... ...+.+++. ...+.+|||||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 457899999999999999999998865433333333332 223333332 2358899999987654
Q ss_pred c-------cccccccCCcEEEEEEeCCChhH
Q 030961 71 R-------LRPLSYRGADVFVLAFSLVSRAS 94 (168)
Q Consensus 71 ~-------~~~~~~~~~~~~i~v~d~~~~~s 94 (168)
. .+..+++++|++++|+|+.+.++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 3 23445789999999999876444
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.25 E-value=9.4e-12 Score=92.39 Aligned_cols=93 Identities=14% Similarity=0.111 Sum_probs=52.2
Q ss_pred EEEEEEEeCCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcC
Q 030961 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 134 (168)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 134 (168)
.+.+.++||+|...-. ......+|.+++++|....+....+ ... +. +.+.++++||+|+.....
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i-~~~---i~----~~~~ivvlNK~Dl~~~~~----- 210 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGI-KKG---IF----ELADMIAVNKADDGDGER----- 210 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------C-CTT---HH----HHCSEEEEECCSTTCCHH-----
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHH-HHH---Hh----ccccEEEEEchhccCchh-----
Confidence 4578889999964321 1224689999999998654432211 111 11 235577779999754322
Q ss_pred CCCCcccHHHHHHHHHHh---C------CcEEEEecccCccCC
Q 030961 135 PGLVPVTTAQGEELRKQI---G------ASYYIECSSKTQQVC 168 (168)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~---~------~~~~~~~Sa~~~~~i 168 (168)
......+.+.... . ..+++.+||+++.|+
T Consensus 211 -----~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi 248 (337)
T 2qm8_A 211 -----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGL 248 (337)
T ss_dssp -----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSH
T ss_pred -----HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCH
Confidence 2222233333321 1 236889999999884
No 210
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.21 E-value=6.2e-12 Score=86.43 Aligned_cols=92 Identities=7% Similarity=-0.066 Sum_probs=57.7
Q ss_pred CCCCccccccccccccCCcEEEEEEeCCChhHHHHHHHhH---HHHHchhC--CCCcEEEEeeCC-cccccchhhhcCCC
Q 030961 63 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW---IPELQHYS--PGVPVVLVGTKL-DLREDKHYLADHPG 136 (168)
Q Consensus 63 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~l~~~~--~~~p~ivv~nK~-D~~~~~~~~~~~~~ 136 (168)
.+|++.++.+|..++.++|++|||+|.+|++.++ ..+++ ...+.... .+.|++|++||. |+...
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--------- 178 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--------- 178 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB---------
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC---------
Confidence 3489999999999999999999999999886443 32334 44444432 578999999995 67543
Q ss_pred CCcccHHHHHHHHH----HhCCcEEEEecccCccCC
Q 030961 137 LVPVTTAQGEELRK----QIGASYYIECSSKTQQVC 168 (168)
Q Consensus 137 ~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i 168 (168)
.+..+..+... ...| .+..|||++|+|+
T Consensus 179 ---ms~~EI~e~L~L~~l~R~W-~Iq~csA~TGeGL 210 (227)
T 3l82_B 179 ---MPCFYLAHELHLNLLNHPW-LVQDTEAETLTGF 210 (227)
T ss_dssp ---CCHHHHHHHTTGGGGCSCE-EEEEEETTTCTTH
T ss_pred ---CCHHHHHHHcCCcCCCCCE-EEEEeECCCCcCH
Confidence 34433332221 2344 6788999999984
No 211
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.02 E-value=1.7e-10 Score=83.04 Aligned_cols=92 Identities=8% Similarity=-0.068 Sum_probs=62.1
Q ss_pred CCCCccccccccccccCCcEEEEEEeCCChhHHHHHHH---hHHHHHchh--CCCCcEEEEeeC-CcccccchhhhcCCC
Q 030961 63 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLK---KWIPELQHY--SPGVPVVLVGTK-LDLREDKHYLADHPG 136 (168)
Q Consensus 63 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~---~~~~~l~~~--~~~~p~ivv~nK-~D~~~~~~~~~~~~~ 136 (168)
.+||+.++.+|..++.++|++|||+|.+|++.++ ..+ ++...+... ..+.|++|++|| .|+...
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--------- 263 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--------- 263 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---------
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---------
Confidence 4688999999999999999999999999987543 223 233444432 257999999997 577544
Q ss_pred CCcccHHHHHHHHH----HhCCcEEEEecccCccCC
Q 030961 137 LVPVTTAQGEELRK----QIGASYYIECSSKTQQVC 168 (168)
Q Consensus 137 ~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i 168 (168)
.+..+..+... ...+ .+..|||++|+|+
T Consensus 264 ---ms~~EI~e~L~L~~l~r~W-~Iq~csA~tGeGL 295 (312)
T 3l2o_B 264 ---MPCFYLAHELHLNLLNHPW-LVQDTEAETLTGF 295 (312)
T ss_dssp ---CCHHHHHHHTTGGGGCSCE-EEEEEETTTCTTH
T ss_pred ---CCHHHHHHHcCCccCCCcE-EEEecccCCCcCH
Confidence 34333322211 1344 6788999999985
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.97 E-value=9.1e-11 Score=88.12 Aligned_cols=113 Identities=14% Similarity=0.063 Sum_probs=65.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC------CCCCCCCCceeeceeEEEEECCeEEEEEEEeCCCCccccc----ccccc-
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN------KFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR----LRPLS- 76 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~~~- 76 (168)
..+++++|.+|+|||||+|.+.+. .......+..+. ....+.++.. +.++||||-..... +....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~-~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTL-DMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSC-EEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEE-eeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 357999999999999999999975 221111111111 1122333322 67899999643221 11111
Q ss_pred --c---cCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccc
Q 030961 77 --Y---RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (168)
Q Consensus 77 --~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~ 128 (168)
+ +..+.++++++.....-+..+ ..+..+.. .+.|+++++||+|.....
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l--~~l~~l~~--~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGL--ARLDYIKG--GRRSFVCYMANELTVHRT 290 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred HHHhcccccCceEEEEcCCceEEECCE--EEEEEccC--CCceEEEEecCCcccccc
Confidence 1 568899999987432111121 11222332 468999999999987654
No 213
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.96 E-value=1.2e-09 Score=82.33 Aligned_cols=85 Identities=19% Similarity=0.139 Sum_probs=57.3
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeece-eEEEEECCe---------------EEEEEEEeCCCCccc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNF-SANVVAEGT---------------TVNLGLWDTAGQEDY 69 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~---------------~~~~~i~D~~g~~~~ 69 (168)
...++.++|++|+|||||+|.+.+... .....|..+... ...+.+.+. ...+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 356899999999999999999999765 344444333333 233445441 135788999995432
Q ss_pred cc-------cccccccCCcEEEEEEeCCC
Q 030961 70 NR-------LRPLSYRGADVFVLAFSLVS 91 (168)
Q Consensus 70 ~~-------~~~~~~~~~~~~i~v~d~~~ 91 (168)
.. .....++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 21 22234578999999999863
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.90 E-value=1.1e-10 Score=87.68 Aligned_cols=114 Identities=10% Similarity=0.001 Sum_probs=64.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-C----CCCceeece-eEEEEECCeEEEEEEEeCCCCcccccc----cccc-
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPT-D----YIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL----RPLS- 76 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~-~----~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~----~~~~- 76 (168)
..+++++|.+|+|||||+|++++..... . .....+++. ...+.+... +.++||||-.....+ ....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 3579999999999999999998753111 0 011111111 112233322 678999996433211 1111
Q ss_pred -----ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccc
Q 030961 77 -----YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (168)
Q Consensus 77 -----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~ 128 (168)
.+..+.++++++.....-+..+ ..++.+.. .+.|+++++||+|.....
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l--~~~d~l~~--~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGL--ARFDYVSG--GRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred HHhccccccCceEEEEcCCCEEEEcce--EEEEEecC--CCceEEEEecCccccccc
Confidence 2567888888886332111121 11222332 468999999999988664
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.86 E-value=7.8e-08 Score=73.15 Aligned_cols=116 Identities=15% Similarity=0.143 Sum_probs=63.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeece-eEEEEEC--CeEEEEEEEeCCCCccccc-----------
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDNF-SANVVAE--GTTVNLGLWDTAGQEDYNR----------- 71 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~-~~~~~~~--~~~~~~~i~D~~g~~~~~~----------- 71 (168)
.++++++|++|+|||||++.+.+..+...... ..+... ...+... +....+.++|++|......
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 45799999999999999999998754321111 011111 1122222 2334788899998532100
Q ss_pred -------cccc---------cccCC--cE-EEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccc
Q 030961 72 -------LRPL---------SYRGA--DV-FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128 (168)
Q Consensus 72 -------~~~~---------~~~~~--~~-~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~ 128 (168)
.... ...++ |+ ++|+.|...+.+... .++++.+. .+.|+++|.||+|.....
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D--ieilk~L~---~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD--LVTMKKLD---SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--HHHHHHTC---SCSEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--HHHHHHHh---hCCCEEEEEcchhccchH
Confidence 0000 11222 33 556667665544333 34555554 478999999999986543
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.84 E-value=2.2e-09 Score=80.60 Aligned_cols=87 Identities=22% Similarity=0.268 Sum_probs=64.3
Q ss_pred CCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHH
Q 030961 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 144 (168)
Q Consensus 65 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 144 (168)
..+.|+.+.+...+.++++++|+|+.++. ..|...+.+...+.|+++|+||+|+.+.. ...++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~-----------~~~~~ 117 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKS-----------VKHDK 117 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTT-----------SCHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcc-----------cCHHH
Confidence 45778888888888999999999998853 34656666655689999999999997543 22223
Q ss_pred ----HHHHHHHhCC--cEEEEecccCccCC
Q 030961 145 ----GEELRKQIGA--SYYIECSSKTQQVC 168 (168)
Q Consensus 145 ----~~~~~~~~~~--~~~~~~Sa~~~~~i 168 (168)
...+++..+. ..++++||++|.||
T Consensus 118 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi 147 (368)
T 3h2y_A 118 VKHWMRYSAKQLGLKPEDVFLISAAKGQGI 147 (368)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHcCCCcccEEEEeCCCCcCH
Confidence 3344566665 27899999999985
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.80 E-value=7.7e-08 Score=69.23 Aligned_cols=115 Identities=15% Similarity=0.118 Sum_probs=63.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCC-------Cceeece-eEEEEECC--eEEEEEEEeCCCCccccc---c--
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYI-------PTVFDNF-SANVVAEG--TTVNLGLWDTAGQEDYNR---L-- 72 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~-------~~~~~~~-~~~~~~~~--~~~~~~i~D~~g~~~~~~---~-- 72 (168)
.++++++|+.|+|||||++.+++......-. ....... ...+.... ....+.++|++|-..... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 4789999999999999999998743221100 0000001 11222222 223678899998421100 0
Q ss_pred -----------------------ccccccCCcEEEEEEeCC-ChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccccc
Q 030961 73 -----------------------RPLSYRGADVFVLAFSLV-SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127 (168)
Q Consensus 73 -----------------------~~~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~ 127 (168)
....+..+++.++++|.. .+-+-.. ..++..+.+ ..++++|.+|+|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L~~---~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHLSK---VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHHHT---TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHHHh---cCcEEEEEeccccCCH
Confidence 011122467888888843 3222222 345555554 3899999999998754
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.77 E-value=2.2e-09 Score=83.34 Aligned_cols=115 Identities=18% Similarity=0.118 Sum_probs=64.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHh------cCCCC---CC-CCCcee-------eceeEE-EEE----------------
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYT------SNKFP---TD-YIPTVF-------DNFSAN-VVA---------------- 51 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~------~~~~~---~~-~~~~~~-------~~~~~~-~~~---------------- 51 (168)
.+...|+++|.+||||||++++|. +.+.. .+ +.+... ...... +..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999998 33210 00 011000 000000 000
Q ss_pred -CCeEEEEEEEeCCCCccccc-cccc---c--ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcE-EEEeeCCc
Q 030961 52 -EGTTVNLGLWDTAGQEDYNR-LRPL---S--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLD 123 (168)
Q Consensus 52 -~~~~~~~~i~D~~g~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~-ivv~nK~D 123 (168)
....+.+.++||||...... ++.. . ...+|.+++|+|+........ ....+.+ ..|+ .+|.||.|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~---~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKD---KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHH---HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHh---hcCceEEEEeCCc
Confidence 00346788999999754221 1111 0 237899999999987543222 2233333 2575 78899999
Q ss_pred cccc
Q 030961 124 LRED 127 (168)
Q Consensus 124 ~~~~ 127 (168)
....
T Consensus 252 ~~~~ 255 (504)
T 2j37_W 252 GHAK 255 (504)
T ss_dssp SCCC
T ss_pred cccc
Confidence 8743
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.70 E-value=6.7e-09 Score=77.97 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=62.6
Q ss_pred CCccccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHH
Q 030961 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 144 (168)
Q Consensus 65 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 144 (168)
.++.|+...+.....++++++|+|++++.+ .|...+.+...+.|+++|+||+|+.+.... .....+.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~~~-------~~~~~~~ 123 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRSVK-------YPKLLRW 123 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTTCC-------HHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCccC-------HHHHHHH
Confidence 477888888888889999999999998773 344444444457899999999999754210 0011223
Q ss_pred HHHHHHHhCC--cEEEEecccCccCC
Q 030961 145 GEELRKQIGA--SYYIECSSKTQQVC 168 (168)
Q Consensus 145 ~~~~~~~~~~--~~~~~~Sa~~~~~i 168 (168)
...+++..+. ..++.+||++|.|+
T Consensus 124 l~~~~~~~g~~~~~v~~iSA~~g~gi 149 (369)
T 3ec1_A 124 MRRMAEELGLCPVDVCLVSAAKGIGM 149 (369)
T ss_dssp HHHHHHTTTCCCSEEEECBTTTTBTH
T ss_pred HHHHHHHcCCCcccEEEEECCCCCCH
Confidence 3334555665 37899999999885
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.64 E-value=2.9e-08 Score=71.90 Aligned_cols=58 Identities=24% Similarity=0.289 Sum_probs=35.0
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeceeEEEEECCeEEEEEEEeCCCCc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE 67 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 67 (168)
...++++++|.||+|||||+|++.+.... ....+..+.... .+.... .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~-~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ-WVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C-CEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE-EEEeCC---CEEEEECcCcC
Confidence 35689999999999999999999987532 221121111111 122222 46789999964
No 221
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.61 E-value=2.1e-08 Score=71.90 Aligned_cols=56 Identities=14% Similarity=0.057 Sum_probs=34.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCcc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQED 68 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~ 68 (168)
++++++|.+|+|||||+|+|.+..... ..++.+.+.. ..+..+ ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 589999999999999999999876422 1222222221 112222 2467899999654
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.50 E-value=8.4e-07 Score=67.84 Aligned_cols=139 Identities=16% Similarity=0.090 Sum_probs=76.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc------CCC---C-CCCCCce-------eeceeEEEEE--C---------------
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS------NKF---P-TDYIPTV-------FDNFSANVVA--E--------------- 52 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~------~~~---~-~~~~~~~-------~~~~~~~~~~--~--------------- 52 (168)
+...|+++|.+|+||||++..|.. .+. . ..+.+.. .......+.. .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998863 111 0 0010100 0000000100 0
Q ss_pred -CeEEEEEEEeCCCCcccccccc------ccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccc
Q 030961 53 -GTTVNLGLWDTAGQEDYNRLRP------LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125 (168)
Q Consensus 53 -~~~~~~~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~ 125 (168)
...+.+.++||+|........- .....+|.+++|+|+......... ...+... -.+..+|.||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCc
Confidence 0126788999999643221100 112357899999998765443322 2333332 23556889999987
Q ss_pred ccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCccCC
Q 030961 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
... ..+.......+. |+.+++. |++|
T Consensus 253 ~~g--------------G~~ls~~~~~g~-PI~fig~--Ge~v 278 (443)
T 3dm5_A 253 AKG--------------GGALSAVAATGA-PIKFIGT--GEKI 278 (443)
T ss_dssp SSH--------------HHHHHHHHTTCC-CEEEEEC--SSST
T ss_pred ccc--------------cHHHHHHHHHCC-CEEEEEc--CCCh
Confidence 542 234455556776 7766664 5553
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.41 E-value=1.4e-07 Score=68.22 Aligned_cols=88 Identities=16% Similarity=0.051 Sum_probs=56.7
Q ss_pred EeCCCCc-cccccccccccCCcEEEEEEeCCChhHHHH-HHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCC
Q 030961 61 WDTAGQE-DYNRLRPLSYRGADVFVLAFSLVSRASYEN-VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138 (168)
Q Consensus 61 ~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 138 (168)
-..||+. .........+..+|+++.|+|+.++.+... ....++ .+.|.++|+||+|+.+...
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~~--------- 67 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAAV--------- 67 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHHH---------
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHHH---------
Confidence 4467764 333445566889999999999999887652 112222 4689999999999965321
Q ss_pred cccHHHHHHHHHHhCCcEEEEecccCccCC
Q 030961 139 PVTTAQGEELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
.+...++.+..+. +++++||+++.|+
T Consensus 68 ---~~~~~~~~~~~g~-~~i~iSA~~~~gi 93 (282)
T 1puj_A 68 ---TQQWKEHFENQGI-RSLSINSVNGQGL 93 (282)
T ss_dssp ---HHHHHHHHHTTTC-CEEECCTTTCTTG
T ss_pred ---HHHHHHHHHhcCC-cEEEEECCCcccH
Confidence 2222334444566 7899999999875
No 224
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.39 E-value=3.4e-07 Score=72.41 Aligned_cols=63 Identities=21% Similarity=0.100 Sum_probs=38.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeceeEEE---EE-CCeEEEEEEEeCCCCcc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANV---VA-EGTTVNLGLWDTAGQED 68 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~-~~~~~~~~---~~-~~~~~~~~i~D~~g~~~ 68 (168)
.+..+|+++|.||+|||||+|+|++....-....+. +....... .. ......+.++||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 457889999999999999999999875321111111 11111100 11 12234577799999654
No 225
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.38 E-value=2.8e-06 Score=64.54 Aligned_cols=112 Identities=14% Similarity=0.179 Sum_probs=59.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eece-eEEEEEC-CeEEEEEEEeCCCCccccc-----cccccccC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNF-SANVVAE-GTTVNLGLWDTAGQEDYNR-----LRPLSYRG 79 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~-~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~-----~~~~~~~~ 79 (168)
...++++|++|+|||||+|.+.+......-.-.. +... ...+... ...-.+.+||++|...... +....+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 4479999999999999999999843211100000 0000 0011111 1112467899998532111 11112334
Q ss_pred CcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCccc
Q 030961 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125 (168)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~ 125 (168)
.+..++ ++...... .. ..+...+.. .+.|+++|.||.|+.
T Consensus 149 ~~~~~~-lS~G~~~k-qr--v~la~aL~~--~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 149 YDFFII-ISATRFKK-ND--IDIAKAISM--MKKEFYFVRTKVDSD 188 (413)
T ss_dssp CSEEEE-EESSCCCH-HH--HHHHHHHHH--TTCEEEEEECCHHHH
T ss_pred cCCeEE-eCCCCccH-HH--HHHHHHHHh--cCCCeEEEEecCccc
Confidence 455555 77763111 11 223344444 358999999999975
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.37 E-value=9.4e-07 Score=67.57 Aligned_cols=112 Identities=17% Similarity=0.076 Sum_probs=62.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC------CCC-CCCC---C----------------------ceee--ceeEEEEECC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN------KFP-TDYI---P----------------------TVFD--NFSANVVAEG 53 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~------~~~-~~~~---~----------------------~~~~--~~~~~~~~~~ 53 (168)
...|+++|.+|+||||+++.|... +.. ...+ + +..+ .......-.-
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 357999999999999999988752 110 0000 0 0000 0000000001
Q ss_pred eEEEEEEEeCCCCccccc-cc-----cccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCC-c-EEEEeeCCccc
Q 030961 54 TTVNLGLWDTAGQEDYNR-LR-----PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV-P-VVLVGTKLDLR 125 (168)
Q Consensus 54 ~~~~~~i~D~~g~~~~~~-~~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~-p-~ivv~nK~D~~ 125 (168)
..+.+.++||||...... +. -..+..+|.+++|+|+....... .....+. ... | ..+|.||.|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~----~~~~~~~---~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAG----IQAKAFK---EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHH----HHHHHHH---TTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHH----HHHHHHh---hcccCCeEEEEeCCCCc
Confidence 345678999999754211 10 11233689999999986654221 2223332 235 5 78999999986
Q ss_pred c
Q 030961 126 E 126 (168)
Q Consensus 126 ~ 126 (168)
.
T Consensus 252 ~ 252 (432)
T 2v3c_C 252 A 252 (432)
T ss_dssp S
T ss_pred c
Confidence 4
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.34 E-value=8e-07 Score=67.87 Aligned_cols=90 Identities=13% Similarity=0.048 Sum_probs=53.3
Q ss_pred EEEEEEEeCCCCcc--ccc-cccc-----cccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccc
Q 030961 55 TVNLGLWDTAGQED--YNR-LRPL-----SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126 (168)
Q Consensus 55 ~~~~~i~D~~g~~~--~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~ 126 (168)
.+.+.++||||... ... +... .....+.+++|+|+......... ...+.+. -.+..|+.||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~----a~~f~~~--~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL----ASRFHQA--SPIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH----HHHHHHH--CSSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH----HHHHhcc--cCCcEEEEecccccc
Confidence 45677899999643 111 1000 11246899999998765443332 2333332 135678899999874
Q ss_pred cchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEecccCccC
Q 030961 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQV 167 (168)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (168)
. ...+.......+. |+.+++. |++
T Consensus 253 ~--------------~G~als~~~~~g~-Pi~fig~--Ge~ 276 (433)
T 3kl4_A 253 K--------------GGGALSAVVATGA-TIKFIGT--GEK 276 (433)
T ss_dssp C--------------HHHHHHHHHHHTC-EEEEEEC--CSS
T ss_pred c--------------chHHHHHHHHHCC-CEEEEEC--CCC
Confidence 3 2334555666777 7777765 554
No 228
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.27 E-value=2.6e-06 Score=62.27 Aligned_cols=85 Identities=26% Similarity=0.237 Sum_probs=56.7
Q ss_pred ccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcc--cHHHHHHH
Q 030961 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV--TTAQGEEL 148 (168)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~ 148 (168)
.+....+.++|.+++|+|+.++..-....+.++..... .++|.+||+||+|+.++.. . ..++..+.
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~----------~~~~~~~~~~~ 145 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQD----------TEDTIQAYAED 145 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHH----------HHHHHHHHHHH
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhh----------hHHHHHHHHHH
Confidence 34445688999999999998776433333555554444 4789999999999976521 0 01233333
Q ss_pred HHHhCCcEEEEecccCccCC
Q 030961 149 RKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 149 ~~~~~~~~~~~~Sa~~~~~i 168 (168)
....|. +.+.+||.++.|+
T Consensus 146 y~~~g~-~v~~~sa~~~~g~ 164 (307)
T 1t9h_A 146 YRNIGY-DVYLTSSKDQDSL 164 (307)
T ss_dssp HHHHTC-CEEECCHHHHTTC
T ss_pred HHhCCC-eEEEEecCCCCCH
Confidence 344566 7889999988764
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.06 E-value=1.7e-05 Score=57.79 Aligned_cols=85 Identities=14% Similarity=0.056 Sum_probs=50.9
Q ss_pred EEEEEEEeCCCCcc--ccc-ccc-----ccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCc-EEEEeeCCccc
Q 030961 55 TVNLGLWDTAGQED--YNR-LRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLR 125 (168)
Q Consensus 55 ~~~~~i~D~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-~ivv~nK~D~~ 125 (168)
.+.+.++||||... ... +.. .....+|.+++|+|+....... ...+.+.. ..+ ..+|.||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~----~~~~~~~~---~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY----DLASKFNQ---ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH----HHHHHHHH---TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHH----HHHHHHHh---hCCCCEEEEeCCCCC
Confidence 45688999999866 211 111 1234789999999986432221 12233332 355 67889999975
Q ss_pred ccchhhhcCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 030961 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 161 (168)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (168)
.. ...+..++...+. ++.+++
T Consensus 253 ~~--------------~g~~~~~~~~~~~-pi~~i~ 273 (297)
T 1j8m_F 253 AK--------------GGGALSAVAATGA-TIKFIG 273 (297)
T ss_dssp TT--------------HHHHHHHHHTTTC-CEEEEE
T ss_pred cc--------------hHHHHHHHHHHCc-CEEEEe
Confidence 33 2234556777776 666655
No 230
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.04 E-value=1.6e-06 Score=62.13 Aligned_cols=83 Identities=16% Similarity=0.093 Sum_probs=52.7
Q ss_pred CCCcc-ccccccccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccH
Q 030961 64 AGQED-YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT 142 (168)
Q Consensus 64 ~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 142 (168)
||+.. ........+.++|+++.|+|+.++.+.... .+ . .. ++|.++|+||+|+.+... .
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~l----~-ll-~k~~iivlNK~DL~~~~~------------~ 64 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--GV----D-FS-RKETIILLNKVDIADEKT------------T 64 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--TS----C-CT-TSEEEEEEECGGGSCHHH------------H
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--HH----H-hc-CCCcEEEEECccCCCHHH------------H
Confidence 55432 223445567899999999999998776532 11 1 11 689999999999975421 2
Q ss_pred HHHHHHHHHhCCcEEEEecccCccCC
Q 030961 143 AQGEELRKQIGASYYIECSSKTQQVC 168 (168)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~Sa~~~~~i 168 (168)
+....+.+..+. ++ .+||+++.|+
T Consensus 65 ~~~~~~~~~~g~-~v-~iSa~~~~gi 88 (262)
T 3cnl_A 65 KKWVEFFKKQGK-RV-ITTHKGEPRK 88 (262)
T ss_dssp HHHHHHHHHTTC-CE-EECCTTSCHH
T ss_pred HHHHHHHHHcCC-eE-EEECCCCcCH
Confidence 222334445566 67 9999999873
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.00 E-value=5.1e-06 Score=66.22 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~ 32 (168)
..++++|+.|||||||++.+.+-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 359999999999999999998864
No 232
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.93 E-value=1.8e-07 Score=72.29 Aligned_cols=101 Identities=16% Similarity=-0.048 Sum_probs=57.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeecee-EEEEECCeEEEEEEEeCCCCcc--ccccc--------c
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQED--YNRLR--------P 74 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~ 74 (168)
....+|+++|.+|+||||+.++|...-. .....+...... ......+......+||..|.+. .+..+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999875311 001112211100 0000111112335689888732 23332 4
Q ss_pred ccccCCcEEEEEEeCCChhHHHHHHHhHHHHHchh
Q 030961 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY 109 (168)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~ 109 (168)
.++....+.++|+|.++.. .... +.|...+.+.
T Consensus 116 ~~l~~~~G~~vV~D~tn~~-~~~R-~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTT-RERR-AMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCCS-HHHH-HHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCCC-HHHH-HHHHHHHHhc
Confidence 4555678889999998873 4443 6676666654
No 233
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.76 E-value=1.9e-05 Score=52.67 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=23.6
Q ss_pred CCCCcceeeEEEEECCCCCCHHHHHHHHhc
Q 030961 1 MASSASRFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 1 m~~~~~~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
|++.+...-.++++|++||||||+.+.+.+
T Consensus 1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp --CCCTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCccCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 666665666799999999999999998764
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.72 E-value=4.4e-05 Score=58.51 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=22.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.+..-|.|+|.+++|||+|+|+|++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 3566799999999999999999986
No 235
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.61 E-value=0.00014 Score=54.20 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=48.1
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHhHHHHHchhCCCCcEEEEeeCCcccccchhhhcCCCCCcccHHHHHHHH---HHhC
Q 030961 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR---KQIG 153 (168)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 153 (168)
..++|.+++|... ++..-....+.++..... .++|.+||+||+|+.++.. .+..+.+. ...|
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~--~~~~~iivlNK~DL~~~~~------------~~~~~~~~~~y~~~G 192 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCET--LQVEPLIVLNKIDLLDDEG------------MDFVNEQMDIYRNIG 192 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHHH--HTCEEEEEEECGGGCCHHH------------HHHHHHHHHHHHTTT
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCchh------------HHHHHHHHHHHHhCC
Confidence 5789999988664 555322222555544433 3688899999999975421 11122332 3456
Q ss_pred CcEEEEecccCccCC
Q 030961 154 ASYYIECSSKTQQVC 168 (168)
Q Consensus 154 ~~~~~~~Sa~~~~~i 168 (168)
. +.+.+||.++.|+
T Consensus 193 ~-~v~~~Sa~~~~gl 206 (358)
T 2rcn_A 193 Y-RVLMVSSHTQDGL 206 (358)
T ss_dssp C-CEEECBTTTTBTH
T ss_pred C-cEEEEecCCCcCH
Confidence 6 7889999999874
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.55 E-value=5e-05 Score=51.08 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988764
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.53 E-value=5e-05 Score=51.03 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|++|||||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999763
No 238
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.50 E-value=6.6e-05 Score=51.42 Aligned_cols=30 Identities=17% Similarity=0.017 Sum_probs=24.1
Q ss_pred CCCCcceeeEEEEECCCCCCHHHHHHHHhc
Q 030961 1 MASSASRFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 1 m~~~~~~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
|++...+...|++.|.+||||||+++.|..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp TTCCCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccchhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 544444567899999999999999998864
No 239
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.50 E-value=7.1e-05 Score=50.43 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=23.2
Q ss_pred CCCcceeeEEEEECCCCCCHHHHHHHHhcC
Q 030961 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 2 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
++...+...|+++|.+||||||+.+.|...
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 344445678999999999999999988653
No 240
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.47 E-value=7.2e-05 Score=50.44 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
-.++++|++||||||+++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999875
No 241
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.47 E-value=6.8e-05 Score=51.21 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
-.++++|++|||||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999875
No 242
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.39 E-value=6.4e-05 Score=54.94 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
-.++++|++|+|||||+|.+.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 36899999999999999999874
No 243
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.36 E-value=0.00011 Score=50.05 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-++++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999998764
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.35 E-value=0.00011 Score=49.60 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030961 11 CVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~ 31 (168)
++++|+.|||||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999998853
No 245
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.34 E-value=0.00013 Score=48.08 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=18.5
Q ss_pred eEEEEECCCCCCHHHHHHHH
Q 030961 9 IKCVTVGDGAVGKTCMLICY 28 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l 28 (168)
..|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 246
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.33 E-value=0.00011 Score=48.93 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 030961 10 KCVTVGDGAVGKTCMLICYT 29 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~ 29 (168)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999654
No 247
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.31 E-value=0.00013 Score=50.10 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=20.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.+...+.++|+.|||||||++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999998865
No 248
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.31 E-value=0.00016 Score=49.40 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.--++++|++|+|||||+++|...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 345889999999999999999853
No 249
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.30 E-value=0.00014 Score=49.43 Aligned_cols=31 Identities=23% Similarity=0.132 Sum_probs=23.1
Q ss_pred CCCCcceeeEEEEECCCCCCHHHHHHHHhcC
Q 030961 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 1 m~~~~~~~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
|...+.+...|++.|.+||||||+.+.|...
T Consensus 1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 5445556778999999999999999998764
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.30 E-value=0.00014 Score=50.04 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
--++++|++||||||+++.|...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35889999999999999999864
No 251
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.30 E-value=0.00015 Score=49.08 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030961 11 CVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~ 31 (168)
|+++|++|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999753
No 252
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.29 E-value=0.00019 Score=47.68 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
..|++.|.|||||||+.++|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999976
No 253
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.29 E-value=0.00016 Score=49.23 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
...++++|++||||||+++.+.+.
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999998764
No 254
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.28 E-value=0.00015 Score=48.27 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
+|+++|.+||||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 255
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.28 E-value=0.00017 Score=49.54 Aligned_cols=25 Identities=12% Similarity=0.022 Sum_probs=21.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.+...+.++|++|||||||++.+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998764
No 256
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.28 E-value=0.00015 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|++|||||||++.+.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998763
No 257
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.27 E-value=0.00017 Score=49.39 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-|+++|++||||||++++|..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999875
No 258
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.27 E-value=0.00018 Score=48.33 Aligned_cols=23 Identities=13% Similarity=0.008 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...|++.|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 259
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.26 E-value=0.00016 Score=49.63 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-++++|+.|||||||++.+.+.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999998764
No 260
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.26 E-value=0.00058 Score=49.74 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 030961 10 KCVTVGDGAVGKTCMLICYT 29 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~ 29 (168)
.++++|++|+|||||+|.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999998
No 261
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.26 E-value=0.00016 Score=50.25 Aligned_cols=22 Identities=9% Similarity=0.232 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-++++|+.|||||||++.+.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998864
No 262
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.25 E-value=0.00018 Score=49.48 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
No 263
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.25 E-value=0.00019 Score=47.34 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
.|++.|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 264
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.25 E-value=0.00019 Score=48.93 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-.++++|++||||||+++.+.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998864
No 265
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.23 E-value=0.00019 Score=47.54 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
..|+++|++||||||+.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998875
No 266
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.23 E-value=0.00016 Score=49.51 Aligned_cols=23 Identities=17% Similarity=-0.041 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...|++.|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 267
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.23 E-value=0.0002 Score=49.28 Aligned_cols=22 Identities=18% Similarity=0.070 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
++|++.|++||||||+..+|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999854
No 268
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.21 E-value=0.00023 Score=49.01 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
++|+++|+|||||+|...++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998875
No 269
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.21 E-value=0.00024 Score=49.19 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
..|.++|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 270
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.18 E-value=0.00028 Score=48.01 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=21.6
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.....|++.|.+||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998864
No 271
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.17 E-value=0.00023 Score=47.93 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
-++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 272
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.16 E-value=0.00029 Score=48.85 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=19.3
Q ss_pred eeeE-EEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIK-CVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~-i~vvG~~~~GKStli~~l~~ 30 (168)
+..| |+++|+|||||+|.+.+|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3444 56789999999999998864
No 273
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.16 E-value=0.00032 Score=46.96 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...|+++|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 274
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.16 E-value=0.00025 Score=52.90 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNK 32 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~ 32 (168)
.++++|++|+|||||+|.+.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999999754
No 275
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.15 E-value=0.00027 Score=48.81 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=20.9
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
+...|+++|.+||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 276
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.15 E-value=0.0003 Score=49.55 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHh
Q 030961 8 FIKCVTVGDGAVGKTCMLICYT 29 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~ 29 (168)
.-.++++|++||||||+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 277
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.14 E-value=0.00027 Score=46.99 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-|++.|.+||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 278
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.14 E-value=0.00034 Score=49.29 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=21.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
+..+|++.|++||||||++.+|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999864
No 279
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.14 E-value=0.00029 Score=47.15 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...|+++|.+||||||+...|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
No 280
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.13 E-value=0.00029 Score=47.78 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998865
No 281
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.13 E-value=0.00026 Score=48.21 Aligned_cols=22 Identities=18% Similarity=0.148 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
..|+++|.+||||||+++.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 282
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.10 E-value=0.00026 Score=49.21 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...|++.|.+||||||+.++|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998863
No 283
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.10 E-value=0.00033 Score=47.65 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-.|+++|++||||||+...+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
No 284
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.08 E-value=0.00031 Score=47.18 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
.|++.|.+||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 285
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.08 E-value=0.00042 Score=46.56 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...|++.|.+||||||+...|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 286
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.08 E-value=0.00032 Score=47.16 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998864
No 287
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.07 E-value=0.00037 Score=46.75 Aligned_cols=22 Identities=23% Similarity=0.080 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
..|++.|.+||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 288
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.07 E-value=0.00048 Score=46.86 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=21.2
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.....|++.|.+||||||+.++|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 289
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.05 E-value=0.00032 Score=47.62 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
+++++|+.|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 578999999999999998875
No 290
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.05 E-value=0.00033 Score=48.24 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
++|++.|.+||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 291
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.04 E-value=0.00038 Score=46.61 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
...++++|.+|+|||||++++...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 346899999999999999998863
No 292
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.04 E-value=0.00047 Score=47.04 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
+.|.++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 293
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.04 E-value=0.00036 Score=48.96 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4799999999999999988764
No 294
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.03 E-value=0.00046 Score=47.06 Aligned_cols=23 Identities=13% Similarity=0.014 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...|++.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 295
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.01 E-value=0.00035 Score=47.56 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
.+|+++|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 296
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.01 E-value=0.00042 Score=45.63 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNK 32 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~ 32 (168)
.++++|+.|+|||||++.+.+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999988753
No 297
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.01 E-value=0.0005 Score=49.72 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=21.1
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...-|++.|++||||||++.++..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999864
No 298
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.01 E-value=0.0004 Score=47.27 Aligned_cols=23 Identities=13% Similarity=0.050 Sum_probs=19.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-.|+++|++||||||+.+.+.+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999988754
No 299
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.00 E-value=0.00053 Score=46.53 Aligned_cols=24 Identities=21% Similarity=0.019 Sum_probs=21.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
...|++.|.+||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999998763
No 300
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.00 E-value=0.00038 Score=46.50 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988653
No 301
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.99 E-value=0.00048 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...|++.|.+||||||+...+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45689999999999999998863
No 302
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.99 E-value=0.0005 Score=45.23 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 303
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.98 E-value=0.0004 Score=47.93 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=20.8
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998854
No 304
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.97 E-value=0.00033 Score=48.45 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...|+++|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 305
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.97 E-value=0.00051 Score=47.65 Aligned_cols=21 Identities=14% Similarity=0.079 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 306
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.95 E-value=0.00047 Score=49.16 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
.++++|+.|||||||++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999998876
No 307
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.94 E-value=0.00062 Score=46.49 Aligned_cols=25 Identities=16% Similarity=0.076 Sum_probs=21.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
+...|.++|.+||||||+++.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999998764
No 308
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.94 E-value=0.00045 Score=50.28 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSNK 32 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~~ 32 (168)
.++++|++|+|||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998753
No 309
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.94 E-value=0.00057 Score=47.67 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.0
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
....|+++|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998864
No 310
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.94 E-value=0.00051 Score=50.09 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
.++++|++|+|||||++.+.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 689999999999999998874
No 311
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.94 E-value=0.00055 Score=48.20 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998874
No 312
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.91 E-value=0.00032 Score=48.84 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=15.3
Q ss_pred eEEEEECCCCCCHHHHHHHHh-cC
Q 030961 9 IKCVTVGDGAVGKTCMLICYT-SN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~-~~ 31 (168)
--++++|+.||||||+++.+. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 358999999999999999998 53
No 313
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.91 E-value=0.00045 Score=48.13 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 314
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.91 E-value=0.00048 Score=46.44 Aligned_cols=23 Identities=17% Similarity=-0.003 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...|++.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 315
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.91 E-value=0.00055 Score=49.20 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988774
No 316
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.90 E-value=0.00041 Score=46.28 Aligned_cols=23 Identities=22% Similarity=-0.041 Sum_probs=16.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 317
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.90 E-value=0.00062 Score=47.82 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988764
No 318
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.90 E-value=0.00057 Score=48.76 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999988764
No 319
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.90 E-value=0.0006 Score=47.19 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 320
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.88 E-value=0.00063 Score=47.59 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 030961 10 KCVTVGDGAVGKTCMLICYT 29 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~ 29 (168)
-++++|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 321
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.88 E-value=0.00067 Score=47.81 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999998764
No 322
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.88 E-value=0.00067 Score=45.56 Aligned_cols=21 Identities=19% Similarity=-0.026 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 323
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.88 E-value=0.00067 Score=47.97 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998774
No 324
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.87 E-value=0.00074 Score=44.95 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...+.++|.+|||||||+.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999875
No 325
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.86 E-value=0.00087 Score=44.94 Aligned_cols=24 Identities=21% Similarity=0.111 Sum_probs=20.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
+...|+++|.+||||||++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 326
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.86 E-value=0.00082 Score=48.67 Aligned_cols=25 Identities=16% Similarity=0.022 Sum_probs=21.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.+...|.++|++|||||||++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999987653
No 327
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.86 E-value=0.00064 Score=48.63 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.+.++|+.|||||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4689999999999999998874
No 328
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.86 E-value=0.00066 Score=45.75 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
-|++.|.+||||||++++|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999865
No 329
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.85 E-value=0.00064 Score=48.35 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988764
No 330
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.85 E-value=0.00087 Score=49.06 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=21.5
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
....-+.++|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4456789999999999999998865
No 331
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.84 E-value=0.00081 Score=47.80 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
..|++.|.+||||||+...|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 332
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.84 E-value=0.00078 Score=47.07 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988774
No 333
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.83 E-value=0.00083 Score=47.44 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=21.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...+.|.+.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998854
No 334
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.82 E-value=0.00056 Score=47.25 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-++++|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999863
No 335
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.82 E-value=0.00053 Score=48.52 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=20.9
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
....|+++|++||||||+...+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 336
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.82 E-value=0.00072 Score=48.28 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999988764
No 337
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.82 E-value=0.00071 Score=47.94 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
-++++|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
No 338
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.82 E-value=0.00057 Score=46.15 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...|++.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998865
No 339
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.82 E-value=0.00095 Score=49.04 Aligned_cols=25 Identities=20% Similarity=0.044 Sum_probs=21.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...+-+.++|++|||||||++.+.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999988753
No 340
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.82 E-value=0.00072 Score=47.57 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988774
No 341
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.81 E-value=0.00084 Score=44.61 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
-.+++.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988653
No 342
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.81 E-value=0.00058 Score=50.97 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=21.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.-+++++|++|+|||||++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988764
No 343
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.81 E-value=0.0008 Score=47.95 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5799999999999999998774
No 344
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.81 E-value=0.00064 Score=46.83 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 345
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.81 E-value=0.00079 Score=47.66 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999884
No 346
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.80 E-value=0.00077 Score=47.93 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998774
No 347
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.80 E-value=0.001 Score=45.81 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.+.|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
No 348
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.80 E-value=0.00081 Score=44.38 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 349
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.79 E-value=0.00084 Score=48.03 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999885
No 350
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.79 E-value=0.00079 Score=47.67 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988764
No 351
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.79 E-value=0.00029 Score=47.07 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.+.++|++|||||||++.+.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988763
No 352
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.79 E-value=0.00085 Score=48.11 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988774
No 353
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.78 E-value=0.00093 Score=49.92 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.8
Q ss_pred ceeeEEEEECCCCCCHHHHHHHH
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICY 28 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l 28 (168)
.+..||+++|.++|||||++.++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45789999999999999999885
No 354
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.77 E-value=0.00087 Score=44.81 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
.|+++|.+||||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998864
No 355
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.76 E-value=0.00093 Score=48.13 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988764
No 356
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.75 E-value=0.0011 Score=45.25 Aligned_cols=24 Identities=17% Similarity=0.001 Sum_probs=20.8
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
....+.++|.+||||||+++.+.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 357
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.75 E-value=0.00082 Score=49.01 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-.++++|+.||||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34689999999999999998864
No 358
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.75 E-value=0.001 Score=46.72 Aligned_cols=24 Identities=21% Similarity=0.082 Sum_probs=20.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
+...|.++|+.|||||||++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999998865
No 359
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.74 E-value=0.00062 Score=44.32 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.+.++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988763
No 360
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.73 E-value=0.0009 Score=47.48 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988774
No 361
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.73 E-value=0.00026 Score=48.51 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 362
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.71 E-value=0.00094 Score=47.72 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988764
No 363
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.71 E-value=0.0009 Score=48.02 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|++|+|||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999998763
No 364
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.70 E-value=0.00099 Score=46.96 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998764
No 365
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.70 E-value=0.0011 Score=46.40 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.+.|.+.|++||||||+.+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999998863
No 366
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.69 E-value=0.0012 Score=43.42 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
.|++.|.+||||||+...|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 367
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.68 E-value=0.0012 Score=47.17 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|+|||||++.+.+-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988775
No 368
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.66 E-value=0.0011 Score=48.37 Aligned_cols=23 Identities=26% Similarity=0.086 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-.++++|+.||||||++..+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999998865
No 369
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.63 E-value=0.0015 Score=43.46 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...|+++|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998865
No 370
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.63 E-value=0.00071 Score=49.37 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5899999999999999988763
No 371
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.62 E-value=0.0011 Score=49.36 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
.++++|+.|||||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998865
No 372
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.61 E-value=0.0013 Score=47.41 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=21.1
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
..+.|++.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998863
No 373
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.60 E-value=0.0014 Score=46.31 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHh
Q 030961 8 FIKCVTVGDGAVGKTCMLICYT 29 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~ 29 (168)
...|.++|++||||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999887
No 374
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.59 E-value=0.0017 Score=47.91 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=20.9
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
+.--++++|+.||||||+++.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 355789999999999999998875
No 375
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.59 E-value=0.0013 Score=45.34 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999874
No 376
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.57 E-value=0.0012 Score=48.57 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999988763
No 377
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.56 E-value=0.0014 Score=49.15 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
.++++|++||||||+++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998876
No 378
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.56 E-value=0.0014 Score=47.77 Aligned_cols=24 Identities=21% Similarity=0.081 Sum_probs=20.9
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
....+.++|+.|||||||++.+.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998875
No 379
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.56 E-value=0.0015 Score=48.86 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-+.++|+.|||||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4689999999999999988774
No 380
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.55 E-value=0.0014 Score=44.87 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...|+++|.+||||||+.+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998754
No 381
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.55 E-value=0.0011 Score=46.25 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.4
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
+..-|++.|+.||||||+++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999988764
No 382
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.55 E-value=0.0011 Score=43.96 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.-.+++.|++|+|||+++..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988653
No 383
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.55 E-value=0.0012 Score=49.26 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-++++|+.|||||||++.+.+-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 3689999999999999998874
No 384
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.55 E-value=0.002 Score=44.94 Aligned_cols=24 Identities=17% Similarity=-0.025 Sum_probs=20.9
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
+..-|++.|++||||||+++++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999998865
No 385
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.55 E-value=0.0015 Score=47.18 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
..|+++|.+||||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 386
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.54 E-value=0.0015 Score=48.68 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-++++|+.|||||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4689999999999999998874
No 387
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.54 E-value=0.0016 Score=45.03 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-.+++.|++|+|||+++..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998865
No 388
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.53 E-value=0.0015 Score=46.77 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999998764
No 389
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.53 E-value=0.0015 Score=48.67 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-++++|+.|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4689999999999999998874
No 390
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.52 E-value=0.0016 Score=48.63 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-++++|+.|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4689999999999999998874
No 391
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.52 E-value=0.0016 Score=48.92 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-++++|+.|||||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 3689999999999999998874
No 392
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.49 E-value=0.0013 Score=49.11 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999874
No 393
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.49 E-value=0.0014 Score=47.42 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999988764
No 394
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.48 E-value=0.0017 Score=48.67 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-++++|+.|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 3689999999999999998774
No 395
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.47 E-value=0.0018 Score=48.56 Aligned_cols=22 Identities=27% Similarity=0.230 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-++++|+.|||||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4689999999999999998774
No 396
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.47 E-value=0.0022 Score=43.54 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
-+.|.+.|.+||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999988653
No 397
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.46 E-value=0.0014 Score=48.40 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998874
No 398
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.46 E-value=0.0017 Score=48.46 Aligned_cols=23 Identities=26% Similarity=0.086 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-.++++|+.||||||++..+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34689999999999999998865
No 399
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.45 E-value=0.002 Score=45.50 Aligned_cols=23 Identities=22% Similarity=0.197 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...++++|++|+|||++++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34699999999999999998865
No 400
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.45 E-value=0.0018 Score=44.32 Aligned_cols=21 Identities=24% Similarity=0.110 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999976
No 401
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.43 E-value=0.0023 Score=44.74 Aligned_cols=25 Identities=12% Similarity=0.200 Sum_probs=20.1
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
-.-+++.++|.|||||||+..+|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998864
No 402
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.42 E-value=0.0022 Score=43.48 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
..+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988765
No 403
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.41 E-value=0.0018 Score=45.91 Aligned_cols=22 Identities=23% Similarity=0.054 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
-.|+++|.+||||||+.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998854
No 404
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.41 E-value=0.0019 Score=50.19 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-.++|+|..|||||||++.+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 44689999999999999998864
No 405
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.40 E-value=0.0021 Score=44.74 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 406
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.38 E-value=0.0027 Score=46.63 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
..|+++|++||||||+...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 407
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.36 E-value=0.002 Score=49.07 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-++++|+.|||||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998763
No 408
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.34 E-value=0.0029 Score=46.82 Aligned_cols=22 Identities=36% Similarity=0.317 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-|+++|++|||||||..+|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998865
No 409
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.34 E-value=0.0018 Score=46.80 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-++++|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999987653
No 410
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.31 E-value=0.0015 Score=48.57 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-++++|+.|||||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4789999999999999998774
No 411
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.30 E-value=0.0024 Score=43.92 Aligned_cols=21 Identities=24% Similarity=0.282 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
.+++.|++|+|||+++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 412
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.29 E-value=0.0024 Score=48.60 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
..-|+++|.+||||||+.+++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999865
No 413
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.29 E-value=0.0021 Score=48.52 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4799999999999999988763
No 414
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.28 E-value=0.0026 Score=43.23 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
.+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998865
No 415
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.28 E-value=0.0019 Score=44.32 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
.+++.|+||+|||+++..+.+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999887765
No 416
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.27 E-value=0.0021 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.||||||+++.+.+-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998874
No 417
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.22 E-value=0.0041 Score=44.91 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-.++++|++|+|||+++..+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHH
Confidence 34799999999999999998765
No 418
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.21 E-value=0.0021 Score=45.63 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.8
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
+...|++.|.+||||||+++.|..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999987764
No 419
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.21 E-value=0.003 Score=45.62 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=19.8
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
....+++.|++|+|||+++..+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999975543
No 420
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.20 E-value=0.003 Score=45.11 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
...+++.|++|+|||++++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999998753
No 421
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.18 E-value=0.0027 Score=45.95 Aligned_cols=24 Identities=13% Similarity=-0.111 Sum_probs=20.1
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
....+++.|+||+|||+++..+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678889999999999998865
No 422
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.18 E-value=0.0029 Score=47.48 Aligned_cols=22 Identities=18% Similarity=0.070 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998875
No 423
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.17 E-value=0.0032 Score=45.32 Aligned_cols=24 Identities=17% Similarity=0.121 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
...+++.|++|+|||++++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999988763
No 424
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.16 E-value=0.0035 Score=44.12 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...+++.|++|+|||+++..+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998865
No 425
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.16 E-value=0.0017 Score=46.95 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=17.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.+.|.+.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998764
No 426
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.15 E-value=0.0037 Score=43.61 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=21.0
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
+...|.++|.+||||||+...|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 427
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.15 E-value=0.0015 Score=48.70 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-++++|+.|||||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4689999999999999988774
No 428
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.14 E-value=0.0026 Score=46.58 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
..-++++|..|||||||++.+.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 446789999999999999999965
No 429
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.14 E-value=0.0041 Score=42.48 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
...|+++|++|+|||+|...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999765
No 430
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.10 E-value=0.0039 Score=40.11 Aligned_cols=24 Identities=13% Similarity=-0.043 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
...|++.|++|+|||+++..+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999988654
No 431
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.0024 Score=49.22 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
-.++++|+.|||||||++.+.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 46899999999999999988764
No 432
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.08 E-value=0.0056 Score=43.54 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.5
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
....+++.|++|+|||+++..+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4567999999999999999988763
No 433
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.06 E-value=0.0044 Score=41.97 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
.|.+.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 434
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.05 E-value=0.0033 Score=46.65 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
++.++|+.|+|||||++.+.+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999886
No 435
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.05 E-value=0.0036 Score=45.69 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
-.+++.|++|+|||+|++.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999998865
No 436
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.04 E-value=0.019 Score=44.04 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=20.4
Q ss_pred ceeeEEEEECCCCCCHHHHHHHHh
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICYT 29 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l~ 29 (168)
.+..-|.|+|..++|||+|+|.++
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 456778899999999999999554
No 437
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.04 E-value=0.004 Score=45.44 Aligned_cols=23 Identities=22% Similarity=0.094 Sum_probs=19.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-.++++|++|+||||++..+.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34689999999999999998764
No 438
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.00 E-value=0.0044 Score=44.92 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.-.+++.|++|+|||++++.+.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999988763
No 439
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.00 E-value=0.0033 Score=44.98 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
-++++|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 440
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.99 E-value=0.0037 Score=43.46 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
-+++.|++|+|||||+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999887754
No 441
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.94 E-value=0.0046 Score=44.52 Aligned_cols=23 Identities=22% Similarity=0.197 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...+++.|++|+|||+++..+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998865
No 442
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.93 E-value=0.0037 Score=45.36 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=19.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHh
Q 030961 8 FIKCVTVGDGAVGKTCMLICYT 29 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~ 29 (168)
.-.++++|++|+||||++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999875
No 443
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.91 E-value=0.0049 Score=48.86 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988764
No 444
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.90 E-value=0.0065 Score=44.36 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.-|+++|++|||||+|..++...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 45789999999999999998753
No 445
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.90 E-value=0.0046 Score=45.51 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
++++.|++|+||||++..+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988764
No 446
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.88 E-value=0.0047 Score=41.07 Aligned_cols=21 Identities=19% Similarity=0.079 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
-.+++|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998754
No 447
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.88 E-value=0.0039 Score=45.95 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
++++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998876
No 448
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.87 E-value=0.0042 Score=49.25 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999988764
No 449
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.87 E-value=0.004 Score=46.10 Aligned_cols=23 Identities=22% Similarity=0.098 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-.+++.|++|+|||||++.+.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998875
No 450
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.86 E-value=0.0069 Score=42.11 Aligned_cols=26 Identities=15% Similarity=-0.006 Sum_probs=21.3
Q ss_pred cceeeEEEEECCCCCCHHHHHHHHhc
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
..+..-|++.|.+||||||+++.+..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34566799999999999999998764
No 451
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.85 E-value=0.0056 Score=45.50 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.+++.|++|+|||++++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988754
No 452
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.85 E-value=0.005 Score=47.68 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
.++++|+.|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998875
No 453
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.85 E-value=0.0045 Score=47.42 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
++.++|+.|+|||||++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999998875
No 454
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.82 E-value=0.0059 Score=42.64 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
..|++-|.+||||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 455
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.79 E-value=0.0051 Score=42.89 Aligned_cols=24 Identities=25% Similarity=0.128 Sum_probs=17.6
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
+..-|++-|.+||||||+++++..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356699999999999999998764
No 456
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.78 E-value=0.0065 Score=47.77 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|+|||||++.+.+.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998874
No 457
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.78 E-value=0.0078 Score=44.76 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=20.0
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...+|+++|++|+||||+...+..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 356799999999999999986643
No 458
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.77 E-value=0.0067 Score=41.83 Aligned_cols=23 Identities=13% Similarity=-0.002 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
..-|++-|.+||||||+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999999998854
No 459
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.77 E-value=0.0082 Score=41.80 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=20.0
Q ss_pred cceeeEEEEECCCCCCHHHHHHHH
Q 030961 5 ASRFIKCVTVGDGAVGKTCMLICY 28 (168)
Q Consensus 5 ~~~~~~i~vvG~~~~GKStli~~l 28 (168)
....++|++.|.+|+||||+.-.+
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~l 26 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQA 26 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHH
Confidence 455799999999999999995544
No 460
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.76 E-value=0.0061 Score=44.65 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.-.+++.|+||+|||+|+..+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999988763
No 461
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.76 E-value=0.0045 Score=49.22 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999988764
No 462
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.74 E-value=0.0066 Score=44.39 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
...+++.|+||+|||+++..+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999988653
No 463
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.74 E-value=0.0049 Score=49.04 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999988764
No 464
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.74 E-value=0.0064 Score=40.83 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q 030961 11 CVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~~~ 31 (168)
++|+|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999854
No 465
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.72 E-value=0.0062 Score=41.74 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.+.|++.|.+||||||+...|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988764
No 466
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.70 E-value=0.0063 Score=44.69 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.+++.|++|+|||++++.+.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988653
No 467
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.69 E-value=0.0072 Score=44.22 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.-|+++|++|||||+|..++...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35789999999999999999754
No 468
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.66 E-value=0.0054 Score=45.55 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-+.++|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998864
No 469
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.0075 Score=46.11 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.-.|++.|+||+|||+|+..+.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999988763
No 470
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.66 E-value=0.0098 Score=43.91 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
.-|+|+|++|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998753
No 471
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.63 E-value=0.0079 Score=43.84 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988764
No 472
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.62 E-value=0.0071 Score=45.79 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.9
Q ss_pred ceeeEEEEECCCCCCHHHHHHHH
Q 030961 6 SRFIKCVTVGDGAVGKTCMLICY 28 (168)
Q Consensus 6 ~~~~~i~vvG~~~~GKStli~~l 28 (168)
.+.+|++++|...|||||++.++
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHH
Confidence 45899999999999999999975
No 473
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.62 E-value=0.0081 Score=38.92 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHh
Q 030961 11 CVTVGDGAVGKTCMLICYT 29 (168)
Q Consensus 11 i~vvG~~~~GKStli~~l~ 29 (168)
.+++|+.|+||||++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999999999864
No 474
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.0079 Score=45.89 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-.+++.|+||+|||+++..+.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998865
No 475
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.61 E-value=0.0043 Score=49.15 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6799999999999999877653
No 476
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.59 E-value=0.008 Score=40.14 Aligned_cols=24 Identities=13% Similarity=0.371 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~~ 32 (168)
.-+++.|++|+||||+...|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 468999999999999999998643
No 477
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.59 E-value=0.0076 Score=44.03 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-+++.|++|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 478
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.59 E-value=0.0056 Score=45.39 Aligned_cols=23 Identities=17% Similarity=0.057 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-.+++.|++|+|||++++.+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999999998875
No 479
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.0077 Score=48.04 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.+.++|+.|+|||||++.+.+.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5799999999999999998874
No 480
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.58 E-value=0.0074 Score=47.45 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-+.++|+.|+|||||++.+.+.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999998874
No 481
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.0084 Score=45.87 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=20.9
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
+.-.|++.|+||+|||+|+..+.+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999998865
No 482
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.54 E-value=0.0057 Score=48.58 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.++++|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999987663
No 483
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.54 E-value=0.0033 Score=44.54 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 030961 10 KCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~ 30 (168)
.+++.|++|+|||+++..+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999998875
No 484
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.53 E-value=0.007 Score=44.81 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
-.+++.|+||+|||+++..+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 485
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.52 E-value=0.0075 Score=46.53 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-+++++|+||+|||+++..+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998764
No 486
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.51 E-value=0.0099 Score=46.55 Aligned_cols=22 Identities=36% Similarity=0.157 Sum_probs=19.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHh
Q 030961 8 FIKCVTVGDGAVGKTCMLICYT 29 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~ 29 (168)
..-|+++|.||+||||+..+|.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999885
No 487
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.51 E-value=0.0039 Score=40.02 Aligned_cols=23 Identities=4% Similarity=0.008 Sum_probs=19.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...+++.|++|+|||+++..+..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCcEEEECCCCccHHHHHHHHHH
Confidence 34699999999999999977654
No 488
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.46 E-value=0.0088 Score=44.63 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
...+++.|++|+|||+++..+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998865
No 489
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.45 E-value=0.0087 Score=47.06 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.+.++|+.|||||||++.+.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 490
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.44 E-value=0.0085 Score=45.88 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-.+++.|++|+|||+|++.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998865
No 491
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.44 E-value=0.0089 Score=44.42 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhcC
Q 030961 9 IKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~~ 31 (168)
..+++.|++|+|||+++..+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999988753
No 492
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.43 E-value=0.0091 Score=43.72 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
...+++.|++|+|||++++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999998653
No 493
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.42 E-value=0.0074 Score=44.16 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
-++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999998753
No 494
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.41 E-value=0.0099 Score=47.43 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.+.++|+.|+|||||++.+.+.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5799999999999999998874
No 495
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.40 E-value=0.0085 Score=42.01 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
..-|++.|.+||||||+++++..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998754
No 496
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.39 E-value=0.0098 Score=44.17 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=20.7
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~ 30 (168)
....+++.|+||+|||+++..+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998865
No 497
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.37 E-value=0.011 Score=46.43 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 030961 10 KCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 10 ~i~vvG~~~~GKStli~~l~~~ 31 (168)
.+.++|+.|+|||||++.+.+.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 498
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.36 E-value=0.008 Score=44.65 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhc
Q 030961 9 IKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 9 ~~i~vvG~~~~GKStli~~l~~ 30 (168)
-.+++.|++|+|||++++.+..
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998875
No 499
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.33 E-value=0.01 Score=46.70 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhc
Q 030961 8 FIKCVTVGDGAVGKTCMLICYTS 30 (168)
Q Consensus 8 ~~~i~vvG~~~~GKStli~~l~~ 30 (168)
.-.++++|++|+|||||++.+.+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998764
No 500
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.33 E-value=0.011 Score=43.90 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.2
Q ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Q 030961 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (168)
Q Consensus 7 ~~~~i~vvG~~~~GKStli~~l~~~ 31 (168)
....+++.|++|+|||+++..+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999988653
Done!