BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030962
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure
pdb|2P1N|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|D Chain D, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|A Chain A, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|A Chain A, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|A Chain A, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3OGK|A Chain A, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|C Chain C, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|E Chain E, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|G Chain G, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|I Chain I, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|K Chain K, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|M Chain M, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|O Chain O, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|A Chain A, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|C Chain C, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|E Chain E, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|G Chain G, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|I Chain I, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|K Chain K, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|M Chain M, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|O Chain O, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|A Chain A, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|C Chain C, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|E Chain E, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|G Chain G, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|I Chain I, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|K Chain K, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|M Chain M, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|O Chain O, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 160
Score = 235 bits (600), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 115/166 (69%), Positives = 127/166 (76%), Gaps = 7/166 (4%)
Query: 3 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKK 62
S K IVLKS DGESFEVEEAVALES TI HM+EDDC DNG+PLPNVT KILAKV+EYCK+
Sbjct: 2 SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61
Query: 63 HVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLL 122
HVE ++ ++DLK+WD DF+K+DQATLF+LILAANYLNIK LL
Sbjct: 62 HVEAAASK-------AEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLL 114
Query: 123 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 168
DLTCQTVADMIKGKTPEEIR TFNIKNDFTP NQWAFE
Sbjct: 115 DLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160
>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|F Chain F, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|H Chain H, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|J Chain J, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|L Chain L, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|N Chain N, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|P Chain P, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2OVP|A Chain A, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 149
Score = 156 bits (394), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 104/162 (64%), Gaps = 17/162 (10%)
Query: 7 IVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEV 66
I L+S DGE FEV+ +A +S TIK M+ED D +PLPNV IL KV+++C H +
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-PVPLPNVNAAILKKVIQWCTHHKDD 62
Query: 67 PTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTC 126
P +D+ WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC
Sbjct: 63 PGGSGT----------------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 106
Query: 127 QTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 168
+TVA+MIKGKTPEEIRKTFNIKNDFT NQW E
Sbjct: 107 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 148
>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent
Ubiquitination By The Scffbx4 Ubiquitin Ligase
Length = 149
Score = 156 bits (394), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 104/162 (64%), Gaps = 17/162 (10%)
Query: 7 IVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEV 66
I L+S DGE FEV+ +A +S TIK M+ED D +PLPNV IL KV+++C H +
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-PVPLPNVNAAILKKVIQWCTHHKDD 62
Query: 67 PTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTC 126
P +D+ WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC
Sbjct: 63 PGGSGT----------------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 106
Query: 127 QTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 168
+TVA+MIKGKTPEEIRKTFNIKNDFT NQW E
Sbjct: 107 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 148
>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 145
Score = 155 bits (392), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 104/162 (64%), Gaps = 21/162 (12%)
Query: 7 IVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEV 66
I L+S DGE FEV+ +A +S TIK M+ED D +PLPNV IL KV+++C H +
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-PVPLPNVNAAILKKVIQWCTHHKDD 62
Query: 67 PTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTC 126
P +D+ WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC
Sbjct: 63 PP--------------------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 102
Query: 127 QTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 168
+TVA+MIKGKTPEEIRKTFNIKNDFT NQW E
Sbjct: 103 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 144
>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|B Chain B, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|D Chain D, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
Length = 166
Score = 154 bits (388), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 106/173 (61%), Gaps = 15/173 (8%)
Query: 3 SPKM--IVLKSCDGESFEVEEAVALESTTIKHMIED-----DCADNGIPLPNVTGKILAK 55
P M I L+S DGE FEV+ +A +S TIK M+ED + D+ +PLPNV IL K
Sbjct: 1 GPHMPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKK 60
Query: 56 VVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANY 115
V+++C H +D+ WD +F+KVDQ TLF+LILAANY
Sbjct: 61 VIQWCTHH--------KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANY 112
Query: 116 LNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 168
L+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT NQW E
Sbjct: 113 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 165
>pdb|2ASS|A Chain A, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|A Chain A, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 159
Score = 153 bits (387), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/164 (51%), Positives = 106/164 (64%), Gaps = 13/164 (7%)
Query: 7 IVLKSCDGESFEVEEAVALESTTIKHMIED-----DCADNGIPLPNVTGKILAKVVEYCK 61
I L+S DGE FEV+ +A +S TIK M+ED + D+ +PLPNV IL KV+++C
Sbjct: 3 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 62
Query: 62 KHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGL 121
H + P + +D+ WD +F+KVDQ TLF+LILAANYL+IKGL
Sbjct: 63 HHKDDPPPPEDDENKEKRT--------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGL 114
Query: 122 LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 165
LD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT NQW
Sbjct: 115 LDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 158
>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS1|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 141
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 98/146 (67%), Gaps = 9/146 (6%)
Query: 7 IVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEV 66
I L+S DGE FEV+ +A +S TIK M+ED D +PLPNV IL KV+++C H
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-PVPLPNVNAAILKKVIQWCTHH--- 59
Query: 67 PTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTC 126
+D+ WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC
Sbjct: 60 -----KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 114
Query: 127 QTVADMIKGKTPEEIRKTFNIKNDFT 152
+TVA+MIKGKTPEEIRKTFNIKNDFT
Sbjct: 115 KTVANMIKGKTPEEIRKTFNIKNDFT 140
>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 133
Score = 136 bits (343), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/140 (52%), Positives = 92/140 (65%), Gaps = 9/140 (6%)
Query: 7 IVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEV 66
I L+S DGE FEV+ +A +S TIK M+ED D +PLPNV IL KV+++C H
Sbjct: 3 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-PVPLPNVNAAILKKVIQWCTHH--- 58
Query: 67 PTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTC 126
+D+ WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC
Sbjct: 59 -----KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 113
Query: 127 QTVADMIKGKTPEEIRKTFN 146
+TVA+MIKGKTPEEIRKTFN
Sbjct: 114 KTVANMIKGKTPEEIRKTFN 133
>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|C Chain C, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 169
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 97/169 (57%), Gaps = 20/169 (11%)
Query: 7 IVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNG-------IPLPNVTGKILAKVVEY 59
+VL S +GE F V++ +A S +K+ + D D+ +P+PNV +L KV+E+
Sbjct: 9 VVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEW 68
Query: 60 CKKHVE--VPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLN 117
+ H + P D + SWD +F+KVDQ L+++ILAANYLN
Sbjct: 69 AEHHRDSNFPDEDDDDSRKSAP-----------VDSWDREFLKVDQEMLYEIILAANYLN 117
Query: 118 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 166
IK LLD C+ VA+MI+G++PEEIR+TFNI NDFTP N+WA
Sbjct: 118 IKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 166
>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 169
Score = 119 bits (298), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 95/169 (56%), Gaps = 20/169 (11%)
Query: 7 IVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGI-------PLPNVTGKILAKVVEY 59
+VL S +GE F V++ +A S +K+ + D D+ P+PNV +L KV+E+
Sbjct: 9 VVLVSGEGERFTVDKKIAERSLLLKNYLNDXGDDDDEDDDEIVXPVPNVRSSVLQKVIEW 68
Query: 60 CKKHVE--VPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLN 117
+ H + P D + SWD +F+KVDQ L+++ILAANYLN
Sbjct: 69 AEHHRDSNFPDEDDDDSRKSAP-----------VDSWDREFLKVDQEXLYEIILAANYLN 117
Query: 118 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 166
IK LLD C+ VA+ I+G++PEEIR+TFNI NDFTP N+WA
Sbjct: 118 IKPLLDAGCKVVAEXIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 166
>pdb|1HV2|A Chain A, Solution Structure Of Yeast Elongin C In Complex With A
Von Hippel-Lindau Peptide
Length = 99
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 3 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADN--GIPLPNVTGKILAKVVEYC 60
S + L S D + +E+ + A+ S T+K MIE ++ I L IL K VEY
Sbjct: 2 SQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYL 61
>pdb|3EGW|A Chain A, The Crystal Structure Of The Narghi Mutant Narh - C16a
Length = 1244
Score = 29.6 bits (65), Expect = 0.82, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 105 TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP 138
T++DL LA NY +GL D+ C T D +K TP
Sbjct: 472 TVYDLTLA-NYGLERGLNDVNCATSYDDVKAYTP 504
>pdb|1R27|A Chain A, Crystal Structure Of Nargh Complex
pdb|1R27|C Chain C, Crystal Structure Of Nargh Complex
pdb|1SIW|A Chain A, Crystal Structure Of The Apomolybdo-Narghi
pdb|1Y4Z|A Chain A, The Crystal Structure Of Nitrate Reductase A, Narghi, In
Complex With The Q-Site Inhibitor Pentachlorophenol
pdb|1Y5I|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-K86a
pdb|1Y5L|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-H66y
pdb|1Y5N|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-K86a In
Complex With Pentachlorophenol
Length = 1246
Score = 29.6 bits (65), Expect = 0.84, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 105 TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP 138
T++DL LA NY +GL D+ C T D +K TP
Sbjct: 472 TVYDLTLA-NYGLERGLNDVNCATSYDDVKAYTP 504
>pdb|1Q16|A Chain A, Crystal Structure Of Nitrate Reductase A, Narghi, From
Escherichia Coli
Length = 1247
Score = 29.6 bits (65), Expect = 0.84, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 105 TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP 138
T++DL LA NY +GL D+ C T D +K TP
Sbjct: 473 TVYDLTLA-NYGLERGLNDVNCATSYDDVKAYTP 505
>pdb|3IR7|A Chain A, Crystal Structure Of Narghi Mutant Narg-R94s
Length = 1247
Score = 29.6 bits (65), Expect = 0.88, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 105 TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP 138
T++DL LA NY +GL D+ C T D +K TP
Sbjct: 473 TVYDLTLA-NYGLERGLNDVNCATSYDDVKAYTP 505
>pdb|3IR6|A Chain A, Crystal Structure Of Narghi Mutant Narg-H49s
Length = 1247
Score = 29.6 bits (65), Expect = 0.88, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 105 TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP 138
T++DL LA NY +GL D+ C T D +K TP
Sbjct: 473 TVYDLTLA-NYGLERGLNDVNCATSYDDVKAYTP 505
>pdb|3IR5|A Chain A, Crystal Structure Of Narghi Mutant Narg-H49c
Length = 1247
Score = 29.6 bits (65), Expect = 0.88, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 105 TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP 138
T++DL LA NY +GL D+ C T D +K TP
Sbjct: 473 TVYDLTLA-NYGLERGLNDVNCATSYDDVKAYTP 505
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin
Length = 74
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 126 CQTVADMIKGKTPEEIRKTFNI 147
+ VA +KG+TPEE++K + +
Sbjct: 46 WKKVAQYVKGRTPEEVKKHYEL 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,286,718
Number of Sequences: 62578
Number of extensions: 139008
Number of successful extensions: 384
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 24
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)