Query 030962
Match_columns 168
No_of_seqs 115 out of 764
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 11:10:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030962.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030962hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v7d_A Suppressor of kinetocho 100.0 5.9E-55 2E-59 328.5 15.0 158 1-168 4-168 (169)
2 2p1m_A SKP1-like protein 1A; F 100.0 3.1E-53 1.1E-57 316.6 3.9 160 1-168 1-160 (160)
3 2ast_A S-phase kinase-associat 100.0 2E-48 6.9E-53 290.3 14.7 153 6-166 2-159 (159)
4 1fs1_B SKP1, cyclin A/CDK2-ass 100.0 6.2E-46 2.1E-50 271.9 10.3 139 6-153 3-141 (141)
5 1hv2_A Elongin C, ELC1; protei 99.9 1.8E-28 6.1E-33 169.0 5.9 97 1-118 1-99 (99)
6 1vcb_B Protein (elongin C); tu 99.9 3.1E-27 1.1E-31 166.1 6.6 92 4-118 16-112 (112)
7 2fnj_C Transcription elongatio 99.9 3.4E-27 1.2E-31 161.7 5.5 91 5-118 1-96 (96)
8 4ajy_C Transcription elongatio 99.9 8.2E-25 2.8E-29 150.1 6.2 90 6-118 3-97 (97)
9 2yy9_A Zinc finger and BTB dom 99.0 2.3E-10 8E-15 81.9 5.5 96 7-138 28-124 (135)
10 2vkp_A BTB/POZ domain-containi 99.0 4.2E-09 1.4E-13 72.1 9.2 93 6-132 10-108 (109)
11 1buo_A POZ domain, protein (pr 98.9 8.2E-09 2.8E-13 72.2 9.4 91 6-133 30-121 (121)
12 3b84_A Zinc finger and BTB dom 98.8 8.2E-09 2.8E-13 72.0 7.4 89 7-131 27-116 (119)
13 2vpk_A Myoneurin; transcriptio 98.8 2.5E-08 8.5E-13 69.1 9.8 88 7-130 25-115 (116)
14 3htm_A Speckle-type POZ protei 98.8 3.2E-08 1.1E-12 72.6 10.8 101 7-142 37-141 (172)
15 2if5_A Zinc finger and BTB dom 98.8 3.1E-08 1E-12 68.9 10.1 89 6-129 27-119 (120)
16 2q81_A MIZ-1 protein; BTB/POZ 98.8 2E-08 6.9E-13 70.0 9.0 88 6-130 29-117 (119)
17 3ga1_A Nucleus accumbens-assoc 98.8 7.5E-09 2.6E-13 73.2 6.1 89 7-131 36-126 (129)
18 1r29_A B-cell lymphoma 6 prote 98.8 5.1E-08 1.7E-12 68.5 9.6 90 6-130 31-124 (127)
19 2ppi_A Gigaxonin; BTB domain, 98.7 3E-08 1E-12 71.6 7.9 88 7-129 50-143 (144)
20 4eoz_A Speckle-type POZ protei 98.7 2.2E-08 7.4E-13 71.6 6.7 98 6-138 27-128 (145)
21 2z8h_A Transcription regulator 98.7 4.7E-08 1.6E-12 69.9 7.0 94 7-135 39-135 (138)
22 3ohu_A Transcription regulator 98.6 1.4E-08 4.8E-13 71.2 2.2 87 7-128 35-124 (125)
23 3i3n_A Kelch-like protein 11; 98.6 8.6E-08 2.9E-12 76.0 6.9 102 6-141 34-147 (279)
24 3hve_A Gigaxonin; ubiquitin, c 98.6 1.2E-07 4E-12 74.3 7.4 97 7-138 34-136 (256)
25 3m5b_A Zinc finger and BTB dom 98.5 6.4E-08 2.2E-12 67.8 3.5 84 7-131 33-117 (119)
26 3hqi_A Speckle-type POZ protei 98.5 8.3E-07 2.8E-11 71.2 9.9 101 6-141 176-280 (312)
27 2ihc_A Transcription regulator 98.4 1.2E-07 4.2E-12 66.4 3.0 88 7-129 32-122 (124)
28 3fkc_A Transcriptional regulat 98.4 6.3E-07 2.2E-11 62.2 6.6 81 7-123 34-115 (116)
29 3drz_A BTB/POZ domain-containi 90.9 1.4 4.8E-05 29.4 7.7 93 4-131 5-106 (107)
30 2xf7_A GP23.1; viral protein; 65.8 6.9 0.00024 22.1 3.1 35 129-165 11-46 (51)
31 3g5o_A Uncharacterized protein 53.4 25 0.00085 23.3 4.8 49 101-149 47-97 (108)
32 3drx_A BTB/POZ domain-containi 47.2 19 0.00066 26.9 3.8 93 5-132 12-113 (202)
33 3tnt_A SARS coronavirus main p 46.4 17 0.00057 28.7 3.4 103 42-157 190-297 (306)
34 3mkl_A HTH-type transcriptiona 46.1 59 0.002 21.1 7.0 80 47-149 3-85 (120)
35 2ra2_A Putative lipoprotein; X 45.8 14 0.00047 22.5 2.3 18 1-19 1-18 (64)
36 1pd7_B MAD1; PAH2, SIN3, eukar 45.5 3.2 0.00011 20.5 -0.5 12 106-117 5-16 (26)
37 2k9n_A MYB24; R2R3 domain, DNA 44.7 41 0.0014 21.9 4.8 35 127-161 25-66 (107)
38 1s1g_A Potassium voltage-gated 42.6 18 0.00063 24.6 2.9 87 6-128 14-107 (124)
39 3htm_A Speckle-type POZ protei 41.9 13 0.00044 25.9 2.0 35 101-135 132-166 (172)
40 3i3n_A Kelch-like protein 11; 41.6 26 0.00089 26.6 3.9 65 101-166 139-213 (279)
41 1gv2_A C-MYB, MYB proto-oncoge 41.1 31 0.0011 22.3 3.7 35 127-161 28-69 (105)
42 1h8a_C AMV V-MYB, MYB transfor 40.7 43 0.0015 22.5 4.6 36 126-161 50-92 (128)
43 1wgx_A KIAA1903 protein; MYB D 39.7 19 0.00065 22.4 2.3 39 103-145 15-53 (73)
44 4eef_G F-HB80.4, designed hema 39.7 7.5 0.00026 24.4 0.4 45 100-148 24-68 (74)
45 2cqq_A RSGI RUH-037, DNAJ homo 38.3 22 0.00075 21.9 2.4 18 128-146 36-53 (72)
46 2jsp_A Transcriptional regulat 37.8 15 0.0005 23.8 1.6 24 127-151 36-59 (87)
47 1ug2_A 2610100B20RIK gene prod 37.2 23 0.0008 23.1 2.5 20 127-146 59-78 (95)
48 3d55_A Antitoxin, uncharacteri 36.0 19 0.00064 22.9 1.9 48 101-148 38-90 (91)
49 2eqx_A Kelch repeat and BTB do 35.3 22 0.00076 23.0 2.3 46 101-146 8-62 (105)
50 3hve_A Gigaxonin; ubiquitin, c 34.5 23 0.00079 26.5 2.6 65 101-166 131-205 (256)
51 2guz_B Mitochondrial import in 31.9 26 0.00089 21.1 2.0 20 136-155 1-23 (65)
52 3few_X Colicin S4; cell lysis, 31.9 39 0.0013 28.1 3.6 28 125-152 164-191 (505)
53 3hm5_A DNA methyltransferase 1 31.3 37 0.0013 22.1 2.7 18 128-145 54-76 (93)
54 1x41_A Transcriptional adaptor 31.2 35 0.0012 19.8 2.5 19 127-145 32-50 (60)
55 3osg_A MYB21; transcription-DN 30.4 65 0.0022 21.6 4.1 36 126-161 33-75 (126)
56 2cjj_A Radialis; plant develop 30.0 31 0.0011 22.3 2.2 20 127-146 35-54 (93)
57 3kvt_A Potassium channel prote 29.9 19 0.00065 24.2 1.2 92 1-127 1-99 (115)
58 2qq4_A Iron-sulfur cluster bio 29.8 51 0.0017 22.7 3.5 37 109-145 53-90 (138)
59 3zqc_A MYB3; transcription-DNA 29.5 29 0.00098 23.6 2.1 34 128-161 27-67 (131)
60 3lvl_A NIFU-like protein; prot 29.4 49 0.0017 22.6 3.3 37 109-145 53-90 (129)
61 2rb6_A Uncharacterized protein 28.2 51 0.0017 19.7 2.8 17 1-19 1-17 (61)
62 1xjs_A NIFU-like protein; SR17 28.2 56 0.0019 22.8 3.5 37 109-145 55-92 (147)
63 2nz0_B Potassium voltage-gated 28.0 20 0.0007 25.0 1.1 88 5-128 35-129 (140)
64 1ni7_A ER75, hypothetical prot 27.4 85 0.0029 22.2 4.4 34 121-154 87-128 (155)
65 2eqr_A N-COR1, N-COR, nuclear 26.5 40 0.0014 19.7 2.1 20 127-146 35-54 (61)
66 2lr8_A CAsp8-associated protei 32.5 14 0.00047 22.8 0.0 21 125-146 38-58 (70)
67 2yus_A SWI/SNF-related matrix- 26.5 45 0.0015 20.7 2.5 39 102-146 22-60 (79)
68 1xb4_A VPS25, hypothetical 23. 26.1 27 0.00094 26.0 1.6 14 55-68 33-46 (202)
69 1su0_B NIFU like protein ISCU; 26.0 73 0.0025 22.6 3.8 38 109-146 54-92 (159)
70 2yum_A ZZZ3 protein, zinc fing 25.2 48 0.0017 20.0 2.4 20 126-145 36-55 (75)
71 2cqr_A RSGI RUH-043, DNAJ homo 24.8 23 0.00079 21.8 0.8 21 126-146 44-64 (73)
72 2q6f_A Fragment, infectious br 24.8 46 0.0016 26.2 2.6 102 42-157 190-300 (309)
73 4eo3_A Bacterioferritin comigr 24.4 21 0.00071 28.2 0.7 58 5-62 103-176 (322)
74 3g0m_A Cysteine desulfuration 24.3 72 0.0025 22.2 3.5 32 122-153 81-120 (141)
75 2ki0_A DS119; beta-alpha-beta, 24.2 47 0.0016 17.0 1.8 12 152-163 13-24 (36)
76 1tc3_C Protein (TC3 transposas 24.1 76 0.0026 16.2 3.0 16 133-148 19-34 (51)
77 2elk_A SPCC24B10.08C protein; 24.0 57 0.002 18.7 2.5 20 126-145 32-52 (58)
78 3tlo_A 3CL-Pro, 3CLP, 3C-like 23.3 26 0.0009 27.5 1.1 103 42-158 190-295 (303)
79 2f2c_A Cyclin homolog, V-cycli 23.2 73 0.0025 23.9 3.6 40 120-159 95-135 (254)
80 1go3_F DNA-directed RNA polyme 23.0 79 0.0027 20.8 3.3 38 121-161 64-101 (107)
81 1nn7_A Potassium channel KV4.2 23.0 22 0.00077 23.3 0.5 81 13-128 7-94 (105)
82 2io0_B Small ubiquitin-related 22.7 52 0.0018 20.9 2.3 20 1-20 1-21 (91)
83 2jn0_A Hypothetical lipoprotei 22.2 50 0.0017 19.7 1.9 17 1-19 1-17 (61)
84 2k57_A Putative lipoprotein; s 22.1 77 0.0026 18.9 2.8 17 1-19 1-17 (61)
85 3cuq_C Vacuolar protein-sortin 22.1 33 0.0011 25.0 1.4 14 55-68 36-49 (176)
86 1h89_C C-MYB, MYB proto-oncoge 21.6 83 0.0029 21.8 3.4 35 127-161 82-123 (159)
87 2z7e_A ISCU protein, NIFU-like 21.4 66 0.0023 22.8 2.8 38 109-146 52-90 (157)
88 3kdf_A Replication protein A 1 21.1 73 0.0025 21.5 2.9 61 4-65 38-111 (121)
89 2cu7_A KIAA1915 protein; nucle 21.0 66 0.0023 19.3 2.4 19 127-145 32-50 (72)
90 3few_X Colicin S4; cell lysis, 21.0 74 0.0025 26.5 3.3 103 45-165 186-292 (505)
91 1x3u_A Transcriptional regulat 20.9 93 0.0032 18.2 3.2 17 132-148 28-44 (79)
92 1got_G GT-gamma; complex (GTP- 20.7 41 0.0014 20.8 1.4 25 40-68 35-59 (73)
93 3hqi_A Speckle-type POZ protei 20.3 48 0.0016 25.5 2.0 34 101-134 272-305 (312)
No 1
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=100.00 E-value=5.9e-55 Score=328.46 Aligned_cols=158 Identities=46% Similarity=0.796 Sum_probs=133.6
Q ss_pred CCCCCeEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCC-----C--CCcccCCCCHHHHHHHHHHHHhccCCCCCCCCC
Q 030962 1 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCA-----D--NGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSN 73 (168)
Q Consensus 1 m~~~~~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~~-----~--~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~ 73 (168)
||+ ++|+|+|+||+.|.|++.+|++|++|++|+++.+. . .+||||+|++.+|++||+||+||+.++++...
T Consensus 4 m~~-~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~- 81 (169)
T 3v7d_A 4 MVT-SNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDED- 81 (169)
T ss_dssp --C-CEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC---
T ss_pred CCC-CeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccc-
Confidence 666 89999999999999999999999999999997653 3 68999999999999999999999998753211
Q ss_pred CCCCCCCCCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCH
Q 030962 74 TSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP 153 (168)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~ 153 (168)
. ........+++||++|+++++..||+|+.|||||+|++|+++||++||++|+||||+|||++|||++||||
T Consensus 82 ~--------~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~ 153 (169)
T 3v7d_A 82 D--------DDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTP 153 (169)
T ss_dssp --------------CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCH
T ss_pred c--------ccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCH
Confidence 0 01134567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccC
Q 030962 154 EEEEEVRRENQWAFE 168 (168)
Q Consensus 154 ee~~~i~~e~~w~~~ 168 (168)
||++++|+||+|+||
T Consensus 154 eEe~~ir~en~W~~~ 168 (169)
T 3v7d_A 154 EEEAAIRRENEWAED 168 (169)
T ss_dssp HHHHHHHTTC-----
T ss_pred HHHHHHHHhcccccc
Confidence 999999999999997
No 2
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=100.00 E-value=3.1e-53 Score=316.64 Aligned_cols=160 Identities=78% Similarity=1.199 Sum_probs=89.3
Q ss_pred CCCCCeEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 030962 1 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSN 80 (168)
Q Consensus 1 m~~~~~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~ 80 (168)
|++ ++|+|+|+||+.|.|++.+|.+|++|++|+++.+...+||||+|++.+|++||+||+||+.++++... . .
T Consensus 1 ~~~-~~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~-~-----~ 73 (160)
T 2p1m_A 1 MSA-KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAE-A-----V 73 (160)
T ss_dssp --------CCC---------CHHHHTCTTTC------------CCTTSCHHHHHHHHHC---------------------
T ss_pred CCC-CEEEEEcCCCCEEEECHHHHHHhHHHHHHHHccCCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccc-c-----c
Confidence 444 79999999999999999999999999999998766779999999999999999999999988652221 0 1
Q ss_pred CCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHHHHH
Q 030962 81 GAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVR 160 (168)
Q Consensus 81 ~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~ee~~~i~ 160 (168)
|. .......+++||++|++++.+.||+|+.||+||+|++|+++||++||++|+|||++|||++|||++||||||+++||
T Consensus 74 ~~-~~~~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~eEe~~ir 152 (160)
T 2p1m_A 74 EG-AATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVR 152 (160)
T ss_dssp ----------------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCHHHHHHHH
T ss_pred cc-cccccchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHH
Confidence 11 01355678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccccC
Q 030962 161 RENQWAFE 168 (168)
Q Consensus 161 ~e~~w~~~ 168 (168)
+||+|+||
T Consensus 153 ~en~w~~~ 160 (160)
T 2p1m_A 153 RENQWAFE 160 (160)
T ss_dssp HHHHHHHC
T ss_pred HhCccccC
Confidence 99999997
No 3
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=100.00 E-value=2e-48 Score=290.31 Aligned_cols=153 Identities=59% Similarity=0.959 Sum_probs=134.0
Q ss_pred eEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC-C----CCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 030962 6 MIVLKSCDGESFEVEEAVALESTTIKHMIEDDC-A----DNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSN 80 (168)
Q Consensus 6 ~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~-~----~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~ 80 (168)
.|+|+|+||+.|.|++.+|.+|++|++|+++.+ . ..+||||+|++.+|++|++||+||++++++... +
T Consensus 2 ~v~L~ssDg~~f~v~~~vA~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~-~------ 74 (159)
T 2ast_A 2 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPED-D------ 74 (159)
T ss_dssp EEEEECTTSCEEEEEHHHHHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC------------
T ss_pred eEEEEcCCCCEEEeCHHHHHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCccc-c------
Confidence 489999999999999999999999999998743 2 268999999999999999999999988763221 1
Q ss_pred CCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHHHHH
Q 030962 81 GAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVR 160 (168)
Q Consensus 81 ~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~ee~~~i~ 160 (168)
|.. ......+++||++|++++.+.+++|+.||+||+|++|+++||+++|++|+|||++|||++|||++||||||+++||
T Consensus 75 ~~~-~~~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t~eEe~~ir 153 (159)
T 2ast_A 75 ENK-EKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVR 153 (159)
T ss_dssp -------CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSCTTHHHHHH
T ss_pred ccc-ccchhhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHH
Confidence 111 2346789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhcccc
Q 030962 161 RENQWA 166 (168)
Q Consensus 161 ~e~~w~ 166 (168)
+||+|+
T Consensus 154 ~en~w~ 159 (159)
T 2ast_A 154 KENQWC 159 (159)
T ss_dssp HHTTTC
T ss_pred HhCCCC
Confidence 999996
No 4
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=100.00 E-value=6.2e-46 Score=271.85 Aligned_cols=139 Identities=58% Similarity=0.924 Sum_probs=111.9
Q ss_pred eEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCC
Q 030962 6 MIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATN 85 (168)
Q Consensus 6 ~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~~ 85 (168)
.|+|+|+||+.|.|++.+|.+|++|++|+++.+ ..+||||+|++.+|++|++||+||++++++... + |. ..
T Consensus 3 ~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~-~------~~-~~ 73 (141)
T 1fs1_B 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG-MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPED-D------EN-KE 73 (141)
T ss_dssp EEEEECTTSCEEEEEGGGGGTCHHHHHHHHHTC-CSSEECTTCCHHHHHHHHHHHHHHTTCC------------------
T ss_pred eEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcC-CCceecCCcCHHHHHHHHHHHHHhccCCCcccc-c------cc-cc
Confidence 499999999999999999999999999999866 778999999999999999999999988753221 1 11 11
Q ss_pred CCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCH
Q 030962 86 GGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP 153 (168)
Q Consensus 86 ~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~ 153 (168)
.....+++||++|++++.+.+|+|+.|||||+|++|+++||+++|++|+|||++|||++|||++||||
T Consensus 74 ~~~~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~I~~d~tp 141 (141)
T 1fs1_B 74 KRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTE 141 (141)
T ss_dssp -------HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC-------
T ss_pred cchhhhhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCC
Confidence 34667899999999999999999999999999999999999999999999999999999999999997
No 5
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=99.95 E-value=1.8e-28 Score=169.04 Aligned_cols=97 Identities=29% Similarity=0.501 Sum_probs=83.5
Q ss_pred CCCCCeEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC--CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 030962 1 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDC--ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGAN 78 (168)
Q Consensus 1 m~~~~~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~--~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~ 78 (168)
|++ ++|+|+|+||+.|.|++.+|++|++|++|+++.. ...+||||+|++.+|++|++||+||++++.+.
T Consensus 1 m~~-~~v~L~SsDg~~f~V~~~vA~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~-------- 71 (99)
T 1hv2_A 1 MSQ-DFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVS-------- 71 (99)
T ss_dssp CCC-SEEEEEETTTEEEEEEHHHHTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CCC-cEEEEEecCCCEEEECHHHHHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCc--------
Confidence 666 7999999999999999999999999999999733 23689999999999999999999999765411
Q ss_pred CCCCCCCCCcccccccchhccccchHHHHHHHhhhcccCc
Q 030962 79 SNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNI 118 (168)
Q Consensus 79 ~~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I 118 (168)
.....+++| +++++.||+|+.|||||+|
T Consensus 72 -------~~~~~i~~w-----~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 72 -------EDDDEIPEF-----EIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp -------SSCSSCCCC-----CCCHHHHHHHHHHHHHHCC
T ss_pred -------cccccCCCc-----cCCHHHHHHHHHHHHHhCc
Confidence 123457778 6899999999999999997
No 6
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=99.94 E-value=3.1e-27 Score=166.11 Aligned_cols=92 Identities=26% Similarity=0.435 Sum_probs=79.2
Q ss_pred CCeEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCC-----CCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 030962 4 PKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCA-----DNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGAN 78 (168)
Q Consensus 4 ~~~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~~-----~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~ 78 (168)
+++|+|+|+||++|.|++.+|++|++|++|+++.+. ..+||||+|++.+|++||+||+||++++.
T Consensus 16 ~~~v~L~SsDG~~F~V~~~~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~---------- 85 (112)
T 1vcb_B 16 AMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTN---------- 85 (112)
T ss_dssp -CEEEEECTTSCEEEEEHHHHHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSS----------
T ss_pred CCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccC----------
Confidence 579999999999999999999999999999987542 25899999999999999999999997643
Q ss_pred CCCCCCCCCcccccccchhccccchHHHHHHHhhhcccCc
Q 030962 79 SNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNI 118 (168)
Q Consensus 79 ~~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I 118 (168)
....+++| ++++..||+|+.|||||+|
T Consensus 86 --------~~~~i~~w-----~vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 86 --------SSTEIPEF-----PIAPEIALELLMAANFLDC 112 (112)
T ss_dssp --------CSSCCCCC-----CCCHHHHHHHHHHHHHHTC
T ss_pred --------CcCCCCCc-----ccCHHHHHHHHHHHHHhCc
Confidence 11246677 6899999999999999997
No 7
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=99.93 E-value=3.4e-27 Score=161.74 Aligned_cols=91 Identities=26% Similarity=0.443 Sum_probs=78.5
Q ss_pred CeEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCC-----CCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 030962 5 KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCA-----DNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANS 79 (168)
Q Consensus 5 ~~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~~-----~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~ 79 (168)
++|+|+|+||+.|.|++.+|++|++|++|+++.+. ..+||||+|++.+|++|++||+||++++.+
T Consensus 1 ~~v~L~SsDg~~f~V~~~~A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~---------- 70 (96)
T 2fnj_C 1 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNS---------- 70 (96)
T ss_dssp CEEEEECTTSCEEEEEHHHHTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSC----------
T ss_pred CeEEEEecCCCEEEeCHHHHHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCC----------
Confidence 47999999999999999999999999999997543 258999999999999999999999976431
Q ss_pred CCCCCCCCcccccccchhccccchHHHHHHHhhhcccCc
Q 030962 80 NGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNI 118 (168)
Q Consensus 80 ~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I 118 (168)
...+++| +++++.||+|+.|||||+|
T Consensus 71 --------~~~i~~w-----~vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 71 --------STEIPEF-----PIAPEIALELLMAANFLDC 96 (96)
T ss_dssp --------CSCCCCC-----CCCTTTHHHHHHHHHHHTC
T ss_pred --------cccCCCc-----ccCHHHHHHHHHHHHHhCc
Confidence 1245677 6899999999999999997
No 8
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.91 E-value=8.2e-25 Score=150.07 Aligned_cols=90 Identities=27% Similarity=0.449 Sum_probs=77.6
Q ss_pred eEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCC-----CCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 030962 6 MIVLKSCDGESFEVEEAVALESTTIKHMIEDDCA-----DNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSN 80 (168)
Q Consensus 6 ~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~~-----~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~ 80 (168)
+|+|+|+||++|.|++.+|.+|++|++|+++.+. ..+||||+|++.+|++|++||+||++++.
T Consensus 3 ~v~L~SsDg~~F~v~r~vA~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~------------ 70 (97)
T 4ajy_C 3 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTN------------ 70 (97)
T ss_dssp EEEEECTTCCEEEEEHHHHTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTT------------
T ss_pred EEEEEecCCcEEEecHHHHHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCC------------
Confidence 7999999999999999999999999999987542 56899999999999999999999987653
Q ss_pred CCCCCCCcccccccchhccccchHHHHHHHhhhcccCc
Q 030962 81 GAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNI 118 (168)
Q Consensus 81 ~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I 118 (168)
....+++| +++++.+++|+.||+||+.
T Consensus 71 ------~~~~i~~~-----~i~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 71 ------SSTEIPEF-----PIAPEIALELLMAANFLDC 97 (97)
T ss_dssp ------CCSCCCCC-----CCCGGGHHHHHHHHHHHTC
T ss_pred ------CcCCCCcC-----cCCHHHHHHHHHHHhhhCC
Confidence 11356788 5899999999999999983
No 9
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.04 E-value=2.3e-10 Score=81.86 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=72.0
Q ss_pred EEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCCCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCC
Q 030962 7 IVLKSCDGESFEVEEAV-ALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATN 85 (168)
Q Consensus 7 i~l~S~DG~~~~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~~ 85 (168)
++|+. +|+.|.+++.+ +..|.+++.|+.... ...|.|++++..+++.+++|++..+-
T Consensus 28 v~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~-~~~i~l~~~~~~~f~~lL~fiYtg~~-------------------- 85 (135)
T 2yy9_A 28 ATLDV-GGLVFKAHWSVLACCSHFFQRIYGDGT-GGSVVLPAGFAEIFGLLLDFFYTGHL-------------------- 85 (135)
T ss_dssp EEEEE-TTEEEEECHHHHHHHCHHHHHTCC-----CCEEECGGGHHHHHHHHHHHHHSCC--------------------
T ss_pred eEEEE-CCEEEehHHHHHHHhCHHHHHHHcCCC-CCeEEeCCCCHHHHHHHHHHHhCCCC--------------------
Confidence 56654 68999999997 568999999987543 56789999999999999999996331
Q ss_pred CCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCH
Q 030962 86 GGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP 138 (168)
Q Consensus 86 ~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~ 138 (168)
.++.+.+.+|+.||++|+|+.|.+.|++++...+.++++
T Consensus 86 --------------~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~~~ 124 (135)
T 2yy9_A 86 --------------ALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQ 124 (135)
T ss_dssp --------------CCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC--------
T ss_pred --------------CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCCCC
Confidence 234456899999999999999999999999988888765
No 10
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=98.96 E-value=4.2e-09 Score=72.05 Aligned_cols=93 Identities=13% Similarity=0.153 Sum_probs=75.2
Q ss_pred eEEEEcCCC---CeEEecHHHH-HHhHHHHHHHHhCC--CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 030962 6 MIVLKSCDG---ESFEVEEAVA-LESTTIKHMIEDDC--ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANS 79 (168)
Q Consensus 6 ~i~l~S~DG---~~~~v~~~~a-~~S~~l~~~l~~~~--~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~ 79 (168)
-++|+..+| +.|.+++.++ ..|++++.|+.+.. ....|.+++++..+++.+++|++...-
T Consensus 10 Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~l~~iYt~~~-------------- 75 (109)
T 2vkp_A 10 DVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYMYSDEI-------------- 75 (109)
T ss_dssp CEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------CCEEEETTSCHHHHHHHHHHHHHCCC--------------
T ss_pred cEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCCCeEEeCCCCHHHHHHHHHHHcCCCc--------------
Confidence 477888876 9999999985 68999999997542 126789999999999999999996321
Q ss_pred CCCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHH
Q 030962 80 NGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADM 132 (168)
Q Consensus 80 ~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~ 132 (168)
.++.+.+.+|+.+|++|+++.|.+.|..++...
T Consensus 76 --------------------~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 76 --------------------DLEADTVLATLYAAKKYIVPALAKACVNFLETS 108 (109)
T ss_dssp --------------------CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------cCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 134466889999999999999999999998764
No 11
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=98.91 E-value=8.2e-09 Score=72.19 Aligned_cols=91 Identities=19% Similarity=0.264 Sum_probs=75.2
Q ss_pred eEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCCCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCC
Q 030962 6 MIVLKSCDGESFEVEEAVA-LESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAAT 84 (168)
Q Consensus 6 ~i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~ 84 (168)
-++|+. +|+.|.+++.++ ..|++++.|+.+ ....|.+++++..+++.+++|++..+-
T Consensus 30 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~--~~~~i~l~~~~~~~f~~ll~~~Ytg~~------------------- 87 (121)
T 1buo_A 30 DVVIMV-DSQEFHAHRTVLACTSKMFEILFHR--NSQHYTLDFLSPKTFQQILEYAYTATL------------------- 87 (121)
T ss_dssp CEEEEE-SSCEEEECHHHHHHHCHHHHHHTTS--CCSEEEECSSCHHHHHHHHHHHHHSCC-------------------
T ss_pred CEEEEE-CCEEEehhHHHHhhcCHHHHHHHcC--CCcEEEeCCCCHHHHHHHHHhhcCCCc-------------------
Confidence 356664 689999999984 789999999875 356788999999999999999996321
Q ss_pred CCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHh
Q 030962 85 NGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMI 133 (168)
Q Consensus 85 ~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i 133 (168)
.++.+.+.+|+.||++|++++|.+.|+.++...|
T Consensus 88 ---------------~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 88 ---------------QAKAEDLDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp ---------------CCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ---------------CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 1244668999999999999999999999987654
No 12
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=98.85 E-value=8.2e-09 Score=72.03 Aligned_cols=89 Identities=16% Similarity=0.185 Sum_probs=72.0
Q ss_pred EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCCCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCC
Q 030962 7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATN 85 (168)
Q Consensus 7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~~ 85 (168)
++|+. +|+.|.+++.++ ..|++++.|+.... ...|.+++++..+++.+++|++...-
T Consensus 27 v~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~-~~~i~l~~~~~~~f~~ll~~iYtg~~-------------------- 84 (119)
T 3b84_A 27 ATLDV-GGLVFKAHWSVLACCSHFFQSLYGDGS-GGSVVLPAGFAEIFGLLLDFFYTGHL-------------------- 84 (119)
T ss_dssp EEEEE-TTEEEEECHHHHHHHCHHHHHHHTTTT-CCCEEECGGGHHHHHHHHHHHHHSCC--------------------
T ss_pred eEEEE-CCEEEEeeHHHHhhcCHHHHHHHCCCC-CCeEEeCCCCHHHHHHHHHHHcCCCC--------------------
Confidence 55654 689999999984 68999999997643 67789999999999999999996321
Q ss_pred CCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHH
Q 030962 86 GGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVAD 131 (168)
Q Consensus 86 ~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~ 131 (168)
.++.+++.+|+.||++|+|+.|.+.|+.++..
T Consensus 85 --------------~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 85 --------------ALTSGNRDQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp --------------CCCTTTHHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred --------------ccCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 12345578999999999999999999987743
No 13
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=98.84 E-value=2.5e-08 Score=69.06 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=71.1
Q ss_pred EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCCCCCCcccC--CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCC
Q 030962 7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDCADNGIPLP--NVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAA 83 (168)
Q Consensus 7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~--~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~ 83 (168)
++|+. +|+.|.+++.++ ..|++++.|+... ....|.|+ +++..+++.+++|++... .
T Consensus 25 v~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~-~~~~i~l~~~~~~~~~f~~ll~~~Yt~~---~--------------- 84 (116)
T 2vpk_A 25 CTIVI-GEFQFKAHRNVLASFSEYFGAIYRST-SENNVFLDQSQVKADGFQKLLEFIYTGT---L--------------- 84 (116)
T ss_dssp EEEEE-TTEEEEECHHHHHHHCHHHHHHHTTC-CCSCEECCTTTCCHHHHHHHHHHHHHSC---C---------------
T ss_pred EEEEE-CCEEEeccHHHHhhcCHHHHHHHcCC-CCCeEEeecCCCCHHHHHHHHHHHcCCC---c---------------
Confidence 55555 589999999985 6899999999865 34556565 999999999999998532 1
Q ss_pred CCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHH
Q 030962 84 TNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVA 130 (168)
Q Consensus 84 ~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia 130 (168)
.++.+.+.+|+.||++|+|+.|.+.|+.++.
T Consensus 85 ----------------~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 85 ----------------NLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp ----------------CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred ----------------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 1234578999999999999999999998873
No 14
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=98.84 E-value=3.2e-08 Score=72.64 Aligned_cols=101 Identities=16% Similarity=0.217 Sum_probs=81.7
Q ss_pred EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC---CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 030962 7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDC---ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGA 82 (168)
Q Consensus 7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~ 82 (168)
++|+. +|+.|.+++.++ ..|++++.|+.... ....|.+++++..+++.+++|++...-
T Consensus 37 v~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~----------------- 98 (172)
T 3htm_A 37 CCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA----------------- 98 (172)
T ss_dssp EEEEE-TTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCC-----------------
T ss_pred eEEEE-CCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCC-----------------
Confidence 56665 689999999985 68999999998542 246789999999999999999986431
Q ss_pred CCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHHH
Q 030962 83 ATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIR 142 (168)
Q Consensus 83 ~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eeir 142 (168)
.++.+.+.+|+.+|++|+++.|.+.|..++...+...+.-++.
T Consensus 99 -----------------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~ 141 (172)
T 3htm_A 99 -----------------PNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEIL 141 (172)
T ss_dssp -----------------TTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHH
T ss_pred -----------------CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 1234567899999999999999999999999877777765553
No 15
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=98.83 E-value=3.1e-08 Score=68.94 Aligned_cols=89 Identities=18% Similarity=0.282 Sum_probs=71.9
Q ss_pred eEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC---CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCC
Q 030962 6 MIVLKSCDGESFEVEEAVA-LESTTIKHMIEDDC---ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNG 81 (168)
Q Consensus 6 ~i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~ 81 (168)
-++|+. +|+.|.+++.++ ..|++++.|+.+.. ....|.+++++..+++.+++|++... .
T Consensus 27 Dv~l~v-~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~---~------------- 89 (120)
T 2if5_A 27 DVVILV-EGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTAT---L------------- 89 (120)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSC---C-------------
T ss_pred CeEEEE-CCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCC---C-------------
Confidence 356665 689999999985 58999999998542 24578899999999999999999532 1
Q ss_pred CCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHH
Q 030962 82 AATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTV 129 (168)
Q Consensus 82 ~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~i 129 (168)
.++.+.+.+|+.||++|+|++|.+.|..++
T Consensus 90 ------------------~~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 90 ------------------TVSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp ------------------CCCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 134567899999999999999999999875
No 16
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=98.83 E-value=2e-08 Score=70.01 Aligned_cols=88 Identities=17% Similarity=0.227 Sum_probs=72.3
Q ss_pred eEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCCCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCC
Q 030962 6 MIVLKSCDGESFEVEEAVA-LESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAAT 84 (168)
Q Consensus 6 ~i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~ 84 (168)
-++|+. +|+.|.+++.++ ..|++++.|+.+. ...|.+++++..+++.+++|++..+-
T Consensus 29 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~--~~~i~l~~~~~~~f~~ll~~~Ytg~~------------------- 86 (119)
T 2q81_A 29 DCTFVV-DGVHFKAHKAVLAACSEYFKMLFVDQ--KDVVHLDISNAAGLGQVLEFMYTAKL------------------- 86 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHC--CSGGGGGGCCHHHHHHHHHHHHHSCC-------------------
T ss_pred ceEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHHHcCCCC-------------------
Confidence 356654 689999999985 6899999999863 56788888999999999999996321
Q ss_pred CCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHH
Q 030962 85 NGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVA 130 (168)
Q Consensus 85 ~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia 130 (168)
.++.+++.+|+.||++|+|+.|.+.|+.+++
T Consensus 87 ---------------~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 87 ---------------SLSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp ---------------CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ---------------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 1334568999999999999999999999874
No 17
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=98.80 E-value=7.5e-09 Score=73.19 Aligned_cols=89 Identities=15% Similarity=0.337 Sum_probs=68.7
Q ss_pred EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCCCCCCcccC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCC
Q 030962 7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDCADNGIPLP-NVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAAT 84 (168)
Q Consensus 7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~-~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~ 84 (168)
++|.. +|+.|.+++.++ ..|.+++.|+... ....|.|| +++..+++.+++|++..+
T Consensus 36 v~l~v-~~~~~~~Hk~vLaa~S~~F~~~f~~~-~~~~i~l~~~~~~~~f~~ll~~iYtg~-------------------- 93 (129)
T 3ga1_A 36 VSVVV-KGHAFKAHRAVLAASSSYFRDLFNNS-RSAVVELPAAVQPQSFQQILSFCYTGR-------------------- 93 (129)
T ss_dssp EEEEE-TTEEEEECHHHHHHHBHHHHHHHHHC-CCSEEECCTTCCHHHHHHHHHHHHHSE--------------------
T ss_pred eEEEE-CCEEEEehHHHHHHcCHHHHHHHcCC-CCCEEEECCCCCHHHHHHHHHHHhCCc--------------------
Confidence 56665 799999999985 5899999999875 46678997 899999999999998532
Q ss_pred CCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHH
Q 030962 85 NGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVAD 131 (168)
Q Consensus 85 ~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~ 131 (168)
+.++.+.+.+|+.||++|+|+.|.+.|+.++..
T Consensus 94 --------------~~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~ 126 (129)
T 3ga1_A 94 --------------LSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLK 126 (129)
T ss_dssp --------------EECCTTTHHHHHHHHHHTTBTTSSCC-------
T ss_pred --------------cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 123455689999999999999999999998854
No 18
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=98.77 E-value=5.1e-08 Score=68.53 Aligned_cols=90 Identities=14% Similarity=0.249 Sum_probs=73.2
Q ss_pred eEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC--CCCCccc-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCC
Q 030962 6 MIVLKSCDGESFEVEEAVA-LESTTIKHMIEDDC--ADNGIPL-PNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNG 81 (168)
Q Consensus 6 ~i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~--~~~~Ipl-~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~ 81 (168)
-++|+. +|+.|.+++.++ ..|++++.|+.... ....|.| ++++..+++.+++|++... .
T Consensus 31 Dv~l~v-~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~---~------------- 93 (127)
T 1r29_A 31 DVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSR---L------------- 93 (127)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSC---C-------------
T ss_pred CEEEEE-CCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCC---c-------------
Confidence 356665 589999999985 68999999997543 2456888 8999999999999998532 1
Q ss_pred CCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHH
Q 030962 82 AATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVA 130 (168)
Q Consensus 82 ~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia 130 (168)
.++.+.+.+|+.||++|+|+.|.+.|..++.
T Consensus 94 ------------------~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~ 124 (127)
T 1r29_A 94 ------------------NLREGNIMAVMATAMYLQMEHVVDTCRKFIK 124 (127)
T ss_dssp ------------------CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------------CcCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1344678999999999999999999999885
No 19
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=98.75 E-value=3e-08 Score=71.61 Aligned_cols=88 Identities=20% Similarity=0.354 Sum_probs=71.5
Q ss_pred EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC-----CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 030962 7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDC-----ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSN 80 (168)
Q Consensus 7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~-----~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~ 80 (168)
++|+. +|+.|.+++.++ ..|++++.|+.... ....|.|++++..+++.+++|++.-. .
T Consensus 50 v~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~---~------------ 113 (144)
T 2ppi_A 50 AHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQ---I------------ 113 (144)
T ss_dssp EEEEE-TTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSC---C------------
T ss_pred eEEEE-CCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCC---C------------
Confidence 55655 689999999985 58999999998642 34578999999999999999998421 1
Q ss_pred CCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHH
Q 030962 81 GAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTV 129 (168)
Q Consensus 81 ~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~i 129 (168)
.++.+.+.+|+.||++|+|++|.+.|+.++
T Consensus 114 -------------------~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 114 -------------------RLNEDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp -------------------CCCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred -------------------CCCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 134567899999999999999999998764
No 20
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=98.73 E-value=2.2e-08 Score=71.60 Aligned_cols=98 Identities=14% Similarity=0.195 Sum_probs=72.0
Q ss_pred eEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC---CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCC
Q 030962 6 MIVLKSCDGESFEVEEAVA-LESTTIKHMIEDDC---ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNG 81 (168)
Q Consensus 6 ~i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~ 81 (168)
-++|+. +|+.|.+++.++ ..|++++.++.... ....|.+++++..+++.+++|++...-
T Consensus 27 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~---------------- 89 (145)
T 4eoz_A 27 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA---------------- 89 (145)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCC----------------
T ss_pred ceEEEE-CCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCcc----------------
Confidence 356665 689999999985 68999999998542 246788999999999999999996421
Q ss_pred CCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCH
Q 030962 82 AATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP 138 (168)
Q Consensus 82 ~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~ 138 (168)
.++.+.+.+|+.+|++|+++.|.+.|+.++...+...+.
T Consensus 90 ------------------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~ 128 (145)
T 4eoz_A 90 ------------------PNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENA 128 (145)
T ss_dssp ------------------TTGGGTHHHHHHHHHHTTCHHHHHHHHCC----------
T ss_pred ------------------CCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHH
Confidence 123456789999999999999999999999876654443
No 21
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=98.67 E-value=4.7e-08 Score=69.86 Aligned_cols=94 Identities=13% Similarity=0.206 Sum_probs=74.8
Q ss_pred EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCCC-CCCcccC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCC
Q 030962 7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDCA-DNGIPLP-NVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAA 83 (168)
Q Consensus 7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~~-~~~Ipl~-~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~ 83 (168)
++|+. +|+.|.+++.++ ..|.+++.|+..... ...|.++ +++...++.+++|++..+ .
T Consensus 39 v~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~---~--------------- 99 (138)
T 2z8h_A 39 VTVLV-EGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAK---L--------------- 99 (138)
T ss_dssp EEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSC---C---------------
T ss_pred eEEEE-CCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCC---c---------------
Confidence 55655 589999999985 689999999986432 3457786 899999999999999632 1
Q ss_pred CCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcC
Q 030962 84 TNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKG 135 (168)
Q Consensus 84 ~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ 135 (168)
.++.+.+.+|+.||++|+|+.|.+.|+.++...+..
T Consensus 100 ----------------~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~ 135 (138)
T 2z8h_A 100 ----------------ILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLD 135 (138)
T ss_dssp ----------------CCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSC
T ss_pred ----------------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 134456899999999999999999999998665543
No 22
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=98.59 E-value=1.4e-08 Score=71.23 Aligned_cols=87 Identities=17% Similarity=0.268 Sum_probs=70.0
Q ss_pred EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC-CCCCcccCC-CCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCC
Q 030962 7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDC-ADNGIPLPN-VTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAA 83 (168)
Q Consensus 7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~-~~~~Ipl~~-i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~ 83 (168)
++|+. +|+.|.+++.++ ..|.+++.|+.... ....|.+++ ++..+++.+++|++..+
T Consensus 35 v~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~------------------- 94 (125)
T 3ohu_A 35 VTLIV-ERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAK------------------- 94 (125)
T ss_dssp EEEEE-TTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSE-------------------
T ss_pred eEEEE-CCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCc-------------------
Confidence 56664 689999999984 68999999997643 245688888 99999999999998421
Q ss_pred CCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHH
Q 030962 84 TNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQT 128 (168)
Q Consensus 84 ~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ 128 (168)
+.++.+.+.+|+.||++|+|+.|.+.|+++
T Consensus 95 ---------------~~~~~~~v~~ll~~A~~l~i~~L~~~C~~~ 124 (125)
T 3ohu_A 95 ---------------LLLSRENIREVIRCAEFLRMHNLEDSCFSF 124 (125)
T ss_dssp ---------------EEECTTTHHHHHHHHHHHTBSSCTTSSCCC
T ss_pred ---------------eEECHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 124556789999999999999999988753
No 23
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=98.59 E-value=8.6e-08 Score=76.01 Aligned_cols=102 Identities=12% Similarity=0.182 Sum_probs=77.3
Q ss_pred eEEEEcC--CCCeEEecHHHH-HHhHHHHHHHHhCC---CCCCcccC------CCCHHHHHHHHHHHHhccCCCCCCCCC
Q 030962 6 MIVLKSC--DGESFEVEEAVA-LESTTIKHMIEDDC---ADNGIPLP------NVTGKILAKVVEYCKKHVEVPTTQDSN 73 (168)
Q Consensus 6 ~i~l~S~--DG~~~~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~------~i~s~~L~~Ii~wc~~h~~~~~~~~~~ 73 (168)
-++|+.. ||+.|.+++.++ ..|++++.|+.+.. ....|.|+ +++..+++.+++|++...
T Consensus 34 Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~--------- 104 (279)
T 3i3n_A 34 DITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGR--------- 104 (279)
T ss_dssp CEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSE---------
T ss_pred CeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCC---------
Confidence 3667765 799999999985 57999999986432 24568887 899999999999999532
Q ss_pred CCCCCCCCCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHH
Q 030962 74 TSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEI 141 (168)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eei 141 (168)
+.++.+.+.+|+.||++|+++.|.+.|+.++...+...+.-.+
T Consensus 105 -------------------------~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i 147 (279)
T 3i3n_A 105 -------------------------IRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAI 147 (279)
T ss_dssp -------------------------EEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHH
T ss_pred -------------------------cccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHH
Confidence 1234566889999999999999999999999887776665444
No 24
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=98.58 E-value=1.2e-07 Score=74.28 Aligned_cols=97 Identities=20% Similarity=0.321 Sum_probs=72.7
Q ss_pred EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC-----CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 030962 7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDC-----ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSN 80 (168)
Q Consensus 7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~-----~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~ 80 (168)
++|.. +|+.|.+++.++ ..|++++.|+.... ....|++++++..+++.+++|++...-
T Consensus 34 v~l~v-~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~--------------- 97 (256)
T 3hve_A 34 AHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQI--------------- 97 (256)
T ss_dssp EEEEE-TTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCC---------------
T ss_pred eEEEE-CCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCC---------------
Confidence 55554 689999999986 47999999987532 245789999999999999999996321
Q ss_pred CCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCH
Q 030962 81 GAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP 138 (168)
Q Consensus 81 ~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~ 138 (168)
.++.+.+.+|+.||++|+++.|.+.|+.++...+.-.+.
T Consensus 98 -------------------~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~ 136 (256)
T 3hve_A 98 -------------------RLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENC 136 (256)
T ss_dssp -------------------CCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTT
T ss_pred -------------------cccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhH
Confidence 123456788999999999999999999988776655443
No 25
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=98.50 E-value=6.4e-08 Score=67.76 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=67.5
Q ss_pred EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCCCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCC
Q 030962 7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATN 85 (168)
Q Consensus 7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~~ 85 (168)
++|.. +|+.|.+++.++ ..|.+++. ....|.+++++..+++.+++|++.-+
T Consensus 33 v~l~v-~~~~f~aHk~vLaa~S~yF~~------~~~~i~l~~v~~~~f~~ll~fiYtg~--------------------- 84 (119)
T 3m5b_A 33 TLITV-GSQEFPAHSLVLAGVSQQLGR------RGQWALGEGISPSTFAQLLNFVYGES--------------------- 84 (119)
T ss_dssp EEEEE-TTEEEEECHHHHHTTCGGGCC------CEEEECCSSCCHHHHHHHHHHHTTCC---------------------
T ss_pred eEEEE-CCEEEeeEHHHHHHcCHHHhc------CCCEEEeCCCCHHHHHHHHHHHcCCC---------------------
Confidence 55654 699999999985 57888874 24568899999999999999998421
Q ss_pred CCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHH
Q 030962 86 GGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVAD 131 (168)
Q Consensus 86 ~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~ 131 (168)
+.++.+++.+|+.||++|+|+.|.+.|++++.+
T Consensus 85 -------------~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 85 -------------VELQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp -------------EEECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred -------------cCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 135667889999999999999999999998754
No 26
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=98.47 E-value=8.3e-07 Score=71.25 Aligned_cols=101 Identities=16% Similarity=0.216 Sum_probs=80.1
Q ss_pred eEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC---CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCC
Q 030962 6 MIVLKSCDGESFEVEEAVA-LESTTIKHMIEDDC---ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNG 81 (168)
Q Consensus 6 ~i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~ 81 (168)
-++|.. +|+.|.+++.++ ..|++++.|+.... ....|.|++++..+++.+++|++... .
T Consensus 176 Dv~l~v-~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~---~------------- 238 (312)
T 3hqi_A 176 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGK---A------------- 238 (312)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSC---C-------------
T ss_pred ceEEEE-CCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCC---C-------------
Confidence 355655 789999999984 78999999987532 34678999999999999999998532 1
Q ss_pred CCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHH
Q 030962 82 AATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEI 141 (168)
Q Consensus 82 ~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eei 141 (168)
.++.+.+.+|+.||++|+++.|...|..++...+...+.-++
T Consensus 239 ------------------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~ 280 (312)
T 3hqi_A 239 ------------------PNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEI 280 (312)
T ss_dssp ------------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHH
T ss_pred ------------------CChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHH
Confidence 123478899999999999999999999999877766666544
No 27
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=98.41 E-value=1.2e-07 Score=66.43 Aligned_cols=88 Identities=15% Similarity=0.272 Sum_probs=69.9
Q ss_pred EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCCC-CCCcccC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCC
Q 030962 7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDCA-DNGIPLP-NVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAA 83 (168)
Q Consensus 7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~~-~~~Ipl~-~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~ 83 (168)
++|+. +|+.|.+++.++ ..|++++.|+.+... ...|.++ +++...++.+++|++..+
T Consensus 32 v~l~v-~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~------------------- 91 (124)
T 2ihc_A 32 VTIFV-EGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAK------------------- 91 (124)
T ss_dssp EEEEE-TTEEEEECHHHHHHHBHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSE-------------------
T ss_pred EEEEE-CCEEEecHHHHHHHcCHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCC-------------------
Confidence 55554 589999999985 689999999976432 3457785 899999999999999532
Q ss_pred CCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHH
Q 030962 84 TNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTV 129 (168)
Q Consensus 84 ~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~i 129 (168)
+.++.+.+.+|+.||++|+++.|.+.|+.++
T Consensus 92 ---------------~~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l 122 (124)
T 2ihc_A 92 ---------------LILSKENVDEVCKCVEFLSVHNIEESCFQFL 122 (124)
T ss_dssp ---------------EEEETTTHHHHHHHHHHHTBSSCCGGGGGTC
T ss_pred ---------------cccCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 1234567899999999999999999998764
No 28
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=98.40 E-value=6.3e-07 Score=62.16 Aligned_cols=81 Identities=17% Similarity=0.289 Sum_probs=66.2
Q ss_pred EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCCCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCC
Q 030962 7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATN 85 (168)
Q Consensus 7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~~ 85 (168)
++|+. +|+.|.+++.++ ..|++++.++... ...|.+++++..+++.+++|++..+ .
T Consensus 34 v~l~v-~~~~f~aHk~vLaa~S~~F~~~f~~~--~~~i~l~~~~~~~f~~~l~~~Ytg~---~----------------- 90 (116)
T 3fkc_A 34 VTVIV-EDRKFRAHKNILSASSTYFHQLFSVA--GQVVELSFIRAEIFAEILNYIYSSK---I----------------- 90 (116)
T ss_dssp EEEEE-TTEEEEECHHHHHHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHTTSC---C-----------------
T ss_pred EEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHhhcCCC---c-----------------
Confidence 55654 689999999985 7899999998753 5678899999999999999998421 0
Q ss_pred CCcccccccchhccccchHHHHHHHhhhcccCchhHHH
Q 030962 86 GGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLD 123 (168)
Q Consensus 86 ~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~ 123 (168)
..++.+.+.+|+.||++|+|++|.+
T Consensus 91 -------------~~~~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 91 -------------VRVRSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp -------------CSCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred -------------CCCCHHHHHHHHHHHHHhCccccCc
Confidence 0246678899999999999999875
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=90.90 E-value=1.4 Score=29.38 Aligned_cols=93 Identities=14% Similarity=0.226 Sum_probs=62.2
Q ss_pred CCeEEEEcCCCCeEEecHHHHHHh--HHHHHHHHhC---C----CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCC
Q 030962 4 PKMIVLKSCDGESFEVEEAVALES--TTIKHMIEDD---C----ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNT 74 (168)
Q Consensus 4 ~~~i~l~S~DG~~~~v~~~~a~~S--~~l~~~l~~~---~----~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~ 74 (168)
++.|+|- -.|+.|.+++..+..- ..|..|+... + ....+=+ +-++..++.|+.|+...+-.-+ .
T Consensus 5 ~~~v~LN-VGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p-~---- 77 (107)
T 3drz_A 5 SKWVRLN-VGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVIN-K---- 77 (107)
T ss_dssp CCEEEEE-ETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCC-T----
T ss_pred CCEEEEE-ECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCC-C----
Confidence 3455554 3599999999887542 3567776532 1 1233434 7899999999999997532111 0
Q ss_pred CCCCCCCCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHH
Q 030962 75 SGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVAD 131 (168)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~ 131 (168)
++. ...++..|.|.+|.+|++.|-..|..
T Consensus 78 -------------------------~~~---~~~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 78 -------------------------DLA---EEGVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp -------------------------TSC---HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -------------------------CCC---HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 111 24578899999999999999877653
No 30
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=65.81 E-value=6.9 Score=22.08 Aligned_cols=35 Identities=26% Similarity=0.539 Sum_probs=26.8
Q ss_pred HHHHhcC-CCHHHHHhhcCCCCCCCHHHHHHHHHhccc
Q 030962 129 VADMIKG-KTPEEIRKTFNIKNDFTPEEEEEVRRENQW 165 (168)
Q Consensus 129 ia~~i~~-ks~eeir~~f~i~~d~t~ee~~~i~~e~~w 165 (168)
.-.+..| -+.+++|+..+- .|+|++|-.+|. +|+|
T Consensus 11 ~D~W~~GT~~~~~mR~AV~~-G~iTQ~E~D~I~-~ypw 46 (51)
T 2xf7_A 11 LDSWLDGTASEELLRVAVNA-GDLTQEEADKIM-SYPW 46 (51)
T ss_dssp HHHHHHTCCCHHHHHHHHHH-TSSCHHHHHHHH-TSCT
T ss_pred HHHHhcchhhHHHHHHHHhc-CcccHHHHHHHH-hCcc
Confidence 3456677 478999998775 479999988884 7887
No 31
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=53.40 E-value=25 Score=23.29 Aligned_cols=49 Identities=22% Similarity=0.340 Sum_probs=42.2
Q ss_pred cchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCC--CHHHHHhhcCCCC
Q 030962 101 VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGK--TPEEIRKTFNIKN 149 (168)
Q Consensus 101 ~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~k--s~eeir~~f~i~~ 149 (168)
++.+..-.|......|..+.+.......+++.-.|+ |.+|+++.+|+..
T Consensus 47 ~s~e~ye~l~etl~LL~~~~~~~~L~~a~~~~~~G~~~s~eev~~~lgl~~ 97 (108)
T 3g5o_A 47 VGADEWESLQETLYWLAQPGIRESIAEADADIASGRTYGEDEIRAEFGVPR 97 (108)
T ss_dssp EEHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHTCEECHHHHHHHHTCCC
T ss_pred ecHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHcCCCcCHHHHHHHhCCCc
Confidence 577777778888888989999999999999888886 8899999999974
No 32
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=47.16 E-value=19 Score=26.86 Aligned_cols=93 Identities=14% Similarity=0.235 Sum_probs=60.0
Q ss_pred CeEEEEcCCCCeEEecHHHHHHh--HHHHHHHHhCC-------CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCC
Q 030962 5 KMIVLKSCDGESFEVEEAVALES--TTIKHMIEDDC-------ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTS 75 (168)
Q Consensus 5 ~~i~l~S~DG~~~~v~~~~a~~S--~~l~~~l~~~~-------~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~ 75 (168)
+.|+|- -.|+.|...+..+..- ..|..|+.... ....+=+ +-++..++.|+.|+...+-.-+ .
T Consensus 12 ~~V~LN-VGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP-~----- 83 (202)
T 3drx_A 12 KWVRLN-VGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVIN-K----- 83 (202)
T ss_dssp CEEEEE-ETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCC-T-----
T ss_pred CEEEEE-ECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCC-C-----
Confidence 445543 4599999988766432 24556654211 1233333 6789999999999997432111 0
Q ss_pred CCCCCCCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHH
Q 030962 76 GANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADM 132 (168)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~ 132 (168)
++.. ..++..|.|.+|.+|++.|-..+...
T Consensus 84 ------------------------~~~~---~~l~eEA~FygL~~Lv~~l~~~i~er 113 (202)
T 3drx_A 84 ------------------------DLAE---EGVLEEAEFYNITSLIKLVKDKIRER 113 (202)
T ss_dssp ------------------------TSCH---HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------------CCCH---HHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 1122 35789999999999999998888643
No 33
>3tnt_A SARS coronavirus main protease; 3C-like protease, hydrolase-hydrolase inhibitor CO; HET: G85; 1.59A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=46.41 E-value=17 Score=28.69 Aligned_cols=103 Identities=12% Similarity=0.115 Sum_probs=66.1
Q ss_pred CcccCCCCHHHHHHHHHHHHhccCCCCCC-CCCCCCCCCCCCCCCCCcccccccch--hccccchH--HHHHHHhhhccc
Q 030962 42 GIPLPNVTGKILAKVVEYCKKHVEVPTTQ-DSNTSGANSNGAATNGGEEDLKSWDT--DFVKVDQA--TLFDLILAANYL 116 (168)
Q Consensus 42 ~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~wd~--eFl~~~~~--~l~~Ll~AA~~L 116 (168)
...++.-+--.-..|+.|++-+--..... ..+ .....+.+.+|-. .|-.+..+ ..+..|.|..=-
T Consensus 190 ~~Q~~~~d~~~T~NVvAwLYAAilng~~Wfl~~----------~~~sv~dfN~WA~~ngft~~~~~~~~~~~~Laa~TGV 259 (306)
T 3tnt_A 190 TAQAAGTDTTITLNVLAWLYAAVINGDRWFLNR----------FTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGI 259 (306)
T ss_dssp SCCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCS----------CCCCHHHHHHHHHHTTBCCCCHHHHHHTHHHHHHHTC
T ss_pred hhhccCccceeehhHHHHHHHHHhcCCeEEeec----------cEecHHHHHHHHHhcCCccccccHHHHHHHHHHHhCC
Confidence 34454444555678899998764322212 110 0023445566643 34335554 459999999999
Q ss_pred CchhHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHH
Q 030962 117 NIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEE 157 (168)
Q Consensus 117 ~I~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~ee~~ 157 (168)
++..|+...-+.+.+=+.|++ |-....++++|||+|--
T Consensus 260 sVe~lL~aI~~ll~~g~~G~~---IlG~~~leDE~Tp~~V~ 297 (306)
T 3tnt_A 260 AVLDMCAALKELLQNGMNGRT---ILGSTILEDEFTPFDVV 297 (306)
T ss_dssp CHHHHHHHHHHHHHHCCTTCC---BTTBSSCCCSCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCcCCce---eeccccccccCCHHHHH
Confidence 999999887777777677887 66666688889998743
No 34
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=46.06 E-value=59 Score=21.14 Aligned_cols=80 Identities=9% Similarity=0.057 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHH
Q 030962 47 NVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTC 126 (168)
Q Consensus 47 ~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~ 126 (168)
.+....+.+|++|++.|...+. .+.++ .+-+.++...|..++... -+....++...-
T Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~---------------------~~~~l-A~~~~~S~~~l~r~fk~~-G~s~~~~~~~~R 59 (120)
T 3mkl_A 3 ALQPNMRTRVCTVINNNIAHEW---------------------TLARI-ASELLMSPSLLKKKLREE-ETSYSQLLTECR 59 (120)
T ss_dssp --CCCHHHHHHHHHHTSTTSCC---------------------CHHHH-HHHTTCCHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccCCC---------------------CHHHH-HHHHCcCHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 3456688999999998865433 11222 222456667777776653 333333333322
Q ss_pred H-HHHHHhc--CCCHHHHHhhcCCCC
Q 030962 127 Q-TVADMIK--GKTPEEIRKTFNIKN 149 (168)
Q Consensus 127 ~-~ia~~i~--~ks~eeir~~f~i~~ 149 (168)
- ....++. +.+..+|-..+|..+
T Consensus 60 l~~A~~lL~~~~~si~eIA~~~Gf~~ 85 (120)
T 3mkl_A 60 MQRALQLIVIHGFSIKRVAVSCGYHS 85 (120)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCC
Confidence 2 2223332 456777766666653
No 35
>2ra2_A Putative lipoprotein; X-RAY, NESG, STR88A, Q7CPV8, structural genomics, PSI-2, protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=45.80 E-value=14 Score=22.50 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=11.3
Q ss_pred CCCCCeEEEEcCCCCeEEe
Q 030962 1 MSSPKMIVLKSCDGESFEV 19 (168)
Q Consensus 1 m~~~~~i~l~S~DG~~~~v 19 (168)
|||+ ...+.++||+.+..
T Consensus 1 ~sSS-~yVitt~DG~~IvT 18 (64)
T 2ra2_A 1 MSGP-NYVMHTNDGRSIVT 18 (64)
T ss_dssp ---C-CEEEEETTSCEEEC
T ss_pred CCCC-CEEEEeCCCcEEEc
Confidence 6765 57788899998854
No 36
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=45.54 E-value=3.2 Score=20.54 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=9.6
Q ss_pred HHHHHhhhcccC
Q 030962 106 LFDLILAANYLN 117 (168)
Q Consensus 106 l~~Ll~AA~~L~ 117 (168)
+.-|+.||.||+
T Consensus 5 vq~LLeAAeyLE 16 (26)
T 1pd7_B 5 IQMLLEAADYLE 16 (26)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456889999986
No 37
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=44.73 E-value=41 Score=21.90 Aligned_cols=35 Identities=17% Similarity=0.551 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCHHHHHhhcC------CC-CCCCHHHHHHHHH
Q 030962 127 QTVADMIKGKTPEEIRKTFN------IK-NDFTPEEEEEVRR 161 (168)
Q Consensus 127 ~~ia~~i~~ks~eeir~~f~------i~-~d~t~ee~~~i~~ 161 (168)
..||..+.|+|+.+.|..+. +. ..+|+||.+.+..
T Consensus 25 ~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~ 66 (107)
T 2k9n_A 25 IRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQ 66 (107)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHH
T ss_pred HHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHH
Confidence 46788888999999998642 33 3599998777655
No 38
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=42.64 E-value=18 Score=24.62 Aligned_cols=87 Identities=10% Similarity=0.093 Sum_probs=53.3
Q ss_pred eEEEEcCCCCeEEecHHHHHHh-H-HHHHHHHhC----CCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 030962 6 MIVLKSCDGESFEVEEAVALES-T-TIKHMIEDD----CADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANS 79 (168)
Q Consensus 6 ~i~l~S~DG~~~~v~~~~a~~S-~-~l~~~l~~~----~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~ 79 (168)
.|+| ---|+.|.+++..+..- . .|.. .... .....+-+ +=++..++.|+.|+...+-.-+
T Consensus 14 ~V~L-NVGG~~F~t~~~TL~~~p~S~L~~-~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~~p----------- 79 (124)
T 1s1g_A 14 LIVL-NVSGRRFQTWRTTLERYPDTLLGS-TEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYP----------- 79 (124)
T ss_dssp EEEE-EETTEEEEEEHHHHTTSTTSSTTS-SGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBCCC-----------
T ss_pred EEEE-EeCCEEEEEeHHHHhcCCCceecc-cCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCCCC-----------
Confidence 3443 44599999999876431 1 1111 0000 01234434 6799999999999997432111
Q ss_pred CCCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhH-HHHHHHH
Q 030962 80 NGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGL-LDLTCQT 128 (168)
Q Consensus 80 ~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L-~~~~~~~ 128 (168)
+ ++ .+..|+..|.|.+|.+| ++.||..
T Consensus 80 -------------~------~~---~~~~l~~Ea~fy~i~~l~l~~cC~~ 107 (124)
T 1s1g_A 80 -------------R------YE---CISAYDDELAFYGILPEIIGDCCYE 107 (124)
T ss_dssp -------------T------TS---CHHHHHHHHHHTTCCGGGBCHHHHH
T ss_pred -------------C------Cc---CHHHHHHHHHHcCCChHHHHHHHHH
Confidence 0 11 25678999999999998 4888864
No 39
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=41.88 E-value=13 Score=25.90 Aligned_cols=35 Identities=6% Similarity=0.076 Sum_probs=30.3
Q ss_pred cchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcC
Q 030962 101 VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKG 135 (168)
Q Consensus 101 ~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ 135 (168)
++.++.++++..|...+.+.|.+.|..+|+..+..
T Consensus 132 l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~ 166 (172)
T 3htm_A 132 LSVENAAEILILADLHSADQLKTQAVDFINYHATD 166 (172)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999876543
No 40
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=41.64 E-value=26 Score=26.63 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=46.7
Q ss_pred cchHHHHHHHhhhcccCchhHHHHHHHHHHHHhc---------CCCHHHHHhhcCCCCCCC-HHHHHHHHHhcccc
Q 030962 101 VDQATLFDLILAANYLNIKGLLDLTCQTVADMIK---------GKTPEEIRKTFNIKNDFT-PEEEEEVRRENQWA 166 (168)
Q Consensus 101 ~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~---------~ks~eeir~~f~i~~d~t-~ee~~~i~~e~~w~ 166 (168)
++.++.+.++..|...+.+.|.+.|..+++..+. ..+.+++..+++=. ++. +.|.+-.+--..|+
T Consensus 139 l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~d-~L~v~sE~~vf~av~~W~ 213 (279)
T 3i3n_A 139 LHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDL-EITVDSEEVLFETVLKWV 213 (279)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGSCHHHHHHHHTCS-SCCCSCHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcCCHHHHHHHhcCc-CCCCCCHHHHHHHHHHHH
Confidence 6778899999999999999999999999875543 35788888888753 333 32334444344554
No 41
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=41.13 E-value=31 Score=22.29 Aligned_cols=35 Identities=23% Similarity=0.511 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCHHHHHhhcC------CC-CCCCHHHHHHHHH
Q 030962 127 QTVADMIKGKTPEEIRKTFN------IK-NDFTPEEEEEVRR 161 (168)
Q Consensus 127 ~~ia~~i~~ks~eeir~~f~------i~-~d~t~ee~~~i~~ 161 (168)
..||..+.|+|+.+.|..+. +. ..+|+||.+.+.+
T Consensus 28 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 69 (105)
T 1gv2_A 28 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 69 (105)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHH
T ss_pred HHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHH
Confidence 46788888999999998652 22 3589998777765
No 42
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=40.70 E-value=43 Score=22.48 Aligned_cols=36 Identities=22% Similarity=0.488 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCHHHHHhhcC------CC-CCCCHHHHHHHHH
Q 030962 126 CQTVADMIKGKTPEEIRKTFN------IK-NDFTPEEEEEVRR 161 (168)
Q Consensus 126 ~~~ia~~i~~ks~eeir~~f~------i~-~d~t~ee~~~i~~ 161 (168)
=..||..+.|+|..++|..+. +. ..+|+||.+.+.+
T Consensus 50 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 92 (128)
T 1h8a_C 50 WSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 92 (128)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHH
Confidence 356788889999999998653 22 3589998777655
No 43
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=39.73 E-value=19 Score=22.37 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=23.4
Q ss_pred hHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHHHhhc
Q 030962 103 QATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTF 145 (168)
Q Consensus 103 ~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eeir~~f 145 (168)
.+.+|+-..|..-.+-+.-. ..||..+-|||++|+++.|
T Consensus 15 E~k~fe~ALa~~~~~tp~rW----e~IA~~V~gKT~eE~~~hY 53 (73)
T 1wgx_A 15 ELQKLHCAFASLPKHKPGFW----SEVAAAVGSRSPEECQRKY 53 (73)
T ss_dssp HHHHHHHHHHHSCSSSSSHH----HHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCccHH----HHHHHHcCCCCHHHHHHHH
Confidence 44444444443333333322 4678888999999998754
No 44
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=39.72 E-value=7.5 Score=24.37 Aligned_cols=45 Identities=27% Similarity=0.540 Sum_probs=30.8
Q ss_pred ccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHHHhhcCCC
Q 030962 100 KVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIK 148 (168)
Q Consensus 100 ~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eeir~~f~i~ 148 (168)
.-..+.+|+-..|..--+-+.-. ..||..+-|||++|++..+.++
T Consensus 24 T~eE~K~FE~ALa~yp~~tpdRW----ekIA~~VpGKT~eEVk~hY~~~ 68 (74)
T 4eef_G 24 KFSENIAFEIALSFTNKDTPDRW----KKVAQYVKGRTPEEVKKHYELE 68 (74)
T ss_dssp CTTHHHHHHHHTSSSCSSCCSSS----TTTGGGSCSSCHHHHHGGGC--
T ss_pred CHHHHHHHHHHHHHCCCCCCcHH----HHHHHHcCCCCHHHHHHHHHHh
Confidence 34567788887777655544322 3577777899999999999875
No 45
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=38.33 E-value=22 Score=21.88 Aligned_cols=18 Identities=11% Similarity=0.372 Sum_probs=13.6
Q ss_pred HHHHHhcCCCHHHHHhhcC
Q 030962 128 TVADMIKGKTPEEIRKTFN 146 (168)
Q Consensus 128 ~ia~~i~~ks~eeir~~f~ 146 (168)
.||..+ |+|++|++..+.
T Consensus 36 ~IA~~l-gRt~~eV~~~y~ 53 (72)
T 2cqq_A 36 KIAHEL-GRSVTDVTTKAK 53 (72)
T ss_dssp HHHHHH-TSCHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHH
Confidence 466666 899999988653
No 46
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=37.80 E-value=15 Score=23.76 Aligned_cols=24 Identities=25% Similarity=0.557 Sum_probs=18.8
Q ss_pred HHHHHHhcCCCHHHHHhhcCCCCCC
Q 030962 127 QTVADMIKGKTPEEIRKTFNIKNDF 151 (168)
Q Consensus 127 ~~ia~~i~~ks~eeir~~f~i~~d~ 151 (168)
++++.. -|.|++|=|+.||++.|+
T Consensus 36 RHL~~~-hgltpeeYR~kwGlp~dy 59 (87)
T 2jsp_A 36 RHLTTH-HSMTPEEYREKWDLPVDY 59 (87)
T ss_dssp HHHHHT-TCSCHHHHHHHTTCGGGC
T ss_pred HHHHHc-cCCCHHHHHHHhCCCCCC
Confidence 445431 299999999999999885
No 47
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=37.19 E-value=23 Score=23.06 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=16.6
Q ss_pred HHHHHHhcCCCHHHHHhhcC
Q 030962 127 QTVADMIKGKTPEEIRKTFN 146 (168)
Q Consensus 127 ~~ia~~i~~ks~eeir~~f~ 146 (168)
.+||..+.+++++|++..|.
T Consensus 59 a~iA~~L~Nks~nqV~~RFq 78 (95)
T 1ug2_A 59 SVISQQLGNKTPVEVSHRFR 78 (95)
T ss_dssp HHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHH
Confidence 44888888999999998873
No 48
>3d55_A Antitoxin, uncharacterized protein RV3357/MT3465; tetramer, toxin neutraliSer, toxin inhibitor; 2.13A {Mycobacterium tuberculosis} PDB: 3cto_A 3oei_A* 3oei_E*
Probab=36.00 E-value=19 Score=22.92 Aligned_cols=48 Identities=13% Similarity=0.012 Sum_probs=21.8
Q ss_pred cchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCC-----CHHHHHhhcCCC
Q 030962 101 VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGK-----TPEEIRKTFNIK 148 (168)
Q Consensus 101 ~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~k-----s~eeir~~f~i~ 148 (168)
++.+..-.+....+.|..+.+.......+++.-.|+ +.+|+++.+|+.
T Consensus 38 ~s~e~y~~l~et~~ll~~~~~~~~l~~a~~~~~~G~~~~~~~l~el~~~lg~~ 90 (91)
T 3d55_A 38 MSADDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSVDELREMAGGE 90 (91)
T ss_dssp EEHHHHHHHHHHHHHTTSHHHHHHHHHHHTC----------------------
T ss_pred eeHHHHhhHHHHHHHHhChHHHHHHHHHHHHHHcCCCccCCCHHHHHHHhCCC
Confidence 345555566667777888888877777776666665 448899999885
No 49
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.27 E-value=22 Score=23.05 Aligned_cols=46 Identities=7% Similarity=0.030 Sum_probs=37.0
Q ss_pred cchHHHHHHHhhhcccCchhHHHHHHHHHHHHhc---------CCCHHHHHhhcC
Q 030962 101 VDQATLFDLILAANYLNIKGLLDLTCQTVADMIK---------GKTPEEIRKTFN 146 (168)
Q Consensus 101 ~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~---------~ks~eeir~~f~ 146 (168)
++.++.+.++..|..++.+.|.+.|-+++...+. ..+.+++..+++
T Consensus 8 L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~ 62 (105)
T 2eqx_A 8 VQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIIS 62 (105)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHc
Confidence 6888999999999999999999999998875442 346666666655
No 50
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=34.54 E-value=23 Score=26.52 Aligned_cols=65 Identities=8% Similarity=0.171 Sum_probs=42.8
Q ss_pred cchHHHHHHHhhhcccCchhHHHHHHHHHHHHhc---------CCCHHHHHhhcCCCCCCC-HHHHHHHHHhcccc
Q 030962 101 VDQATLFDLILAANYLNIKGLLDLTCQTVADMIK---------GKTPEEIRKTFNIKNDFT-PEEEEEVRRENQWA 166 (168)
Q Consensus 101 ~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~---------~ks~eeir~~f~i~~d~t-~ee~~~i~~e~~w~ 166 (168)
++.++.+.++..|...+.+.|.+.|..+++..+. ..+.+++..++.=+ ++. +.|.+-.+--..|+
T Consensus 131 l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~d-~L~v~~E~~v~~av~~W~ 205 (256)
T 3hve_A 131 IAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLE-KLNVGNERYVFEAVIRWI 205 (256)
T ss_dssp CCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHHHHHHHCC--------CTTHHHHTTTC
T ss_pred CCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHHHHHHccC-CCCCCCHHHHHHHHHHHH
Confidence 5677889999999999999999999999876653 35667777766542 233 33333334444565
No 51
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=31.90 E-value=26 Score=21.08 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=14.3
Q ss_pred CCHHHHHhhcCCCCC---CCHHH
Q 030962 136 KTPEEIRKTFNIKND---FTPEE 155 (168)
Q Consensus 136 ks~eeir~~f~i~~d---~t~ee 155 (168)
+|.+|-+++|||..+ .+.++
T Consensus 1 mt~~EA~~ILgv~~~~~~a~~~~ 23 (65)
T 2guz_B 1 MTLDESCKILNIEESKGDLNMDK 23 (65)
T ss_dssp CCHHHHHHHTTCCGGGTCCSHHH
T ss_pred CCHHHHHHHhCCCCCcCcCCHHH
Confidence 467788889999866 55543
No 52
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=31.89 E-value=39 Score=28.09 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCCHHHHHhhcCCCCCCC
Q 030962 125 TCQTVADMIKGKTPEEIRKTFNIKNDFT 152 (168)
Q Consensus 125 ~~~~ia~~i~~ks~eeir~~f~i~~d~t 152 (168)
+-+-|..+|.-|||+||-+.+|+++|-.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (505)
T 3few_X 164 AKAGIMEKINHKTPEEIYEALGFNKDES 191 (505)
T ss_dssp HHHHHHHHTTCCCHHHHHHHTTTTTTHH
T ss_pred hhhhHHHHhcCCCHHHHHHHhCCCccch
Confidence 3445778899999999999999999843
No 53
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=31.28 E-value=37 Score=22.10 Aligned_cols=18 Identities=17% Similarity=0.501 Sum_probs=13.3
Q ss_pred HHHHHh-----cCCCHHHHHhhc
Q 030962 128 TVADMI-----KGKTPEEIRKTF 145 (168)
Q Consensus 128 ~ia~~i-----~~ks~eeir~~f 145 (168)
.|++.. .+.|.++|+..|
T Consensus 54 vI~DRy~~~~~~~Rt~EdLK~Ry 76 (93)
T 3hm5_A 54 VIHDRYDHQQFKKRSVEDLKERY 76 (93)
T ss_dssp HHHHHSCTTTSCCCCHHHHHHHH
T ss_pred eehhhhccCCCCCCCHHHHHHHH
Confidence 467777 468999998755
No 54
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=31.23 E-value=35 Score=19.78 Aligned_cols=19 Identities=42% Similarity=0.490 Sum_probs=16.0
Q ss_pred HHHHHHhcCCCHHHHHhhc
Q 030962 127 QTVADMIKGKTPEEIRKTF 145 (168)
Q Consensus 127 ~~ia~~i~~ks~eeir~~f 145 (168)
..||..+.|+|+.|+|..+
T Consensus 32 ~~Ia~~~~~Rt~~qcr~r~ 50 (60)
T 1x41_A 32 QDVANQMCTKTKEECEKHY 50 (60)
T ss_dssp HHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHH
Confidence 5678888999999999865
No 55
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=30.39 E-value=65 Score=21.58 Aligned_cols=36 Identities=17% Similarity=0.352 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCHHHHHhhcC------CC-CCCCHHHHHHHHH
Q 030962 126 CQTVADMIKGKTPEEIRKTFN------IK-NDFTPEEEEEVRR 161 (168)
Q Consensus 126 ~~~ia~~i~~ks~eeir~~f~------i~-~d~t~ee~~~i~~ 161 (168)
=..||..+.|+|+.+.|..+. +. ..+|+||.+.+.+
T Consensus 33 W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 75 (126)
T 3osg_A 33 WKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQ 75 (126)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHH
Confidence 456788888999999998543 33 2489998777655
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=30.03 E-value=31 Score=22.35 Aligned_cols=20 Identities=40% Similarity=0.845 Sum_probs=16.8
Q ss_pred HHHHHHhcCCCHHHHHhhcC
Q 030962 127 QTVADMIKGKTPEEIRKTFN 146 (168)
Q Consensus 127 ~~ia~~i~~ks~eeir~~f~ 146 (168)
..||..+-|+|.+|++..|.
T Consensus 35 ~~IA~~vpGRT~~q~k~ry~ 54 (93)
T 2cjj_A 35 ANVARAVEGRTPEEVKKHYE 54 (93)
T ss_dssp HHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 56888889999999998664
No 57
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=29.89 E-value=19 Score=24.19 Aligned_cols=92 Identities=12% Similarity=0.086 Sum_probs=54.6
Q ss_pred CCCCCeEEEEcCCCCeEEecHHHHHHh--HHHHHHHHhCC----CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCC
Q 030962 1 MSSPKMIVLKSCDGESFEVEEAVALES--TTIKHMIEDDC----ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNT 74 (168)
Q Consensus 1 m~~~~~i~l~S~DG~~~~v~~~~a~~S--~~l~~~l~~~~----~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~ 74 (168)
|++++.|+|-=. |+.|..++..+..- ..|..|+.... ....+=+ +-++..+..|+.|+...+-.-+ .
T Consensus 1 m~~~~~V~LNVG-G~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p-~---- 73 (115)
T 3kvt_A 1 MDAENRVIINVG-GIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYP-T---- 73 (115)
T ss_dssp ---CCEEEEEET-TEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCC-S----
T ss_pred CCCCCEEEEEEC-CEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCC-C----
Confidence 888877777544 99999998876532 22344433211 1233333 6789999999999987432111 0
Q ss_pred CCCCCCCCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHH-HHH
Q 030962 75 SGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDL-TCQ 127 (168)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~-~~~ 127 (168)
++. ...++..|.|.+|.++.-. ||.
T Consensus 74 -------------------------~~~---~~~~~~Ea~fy~i~~~~l~~CC~ 99 (115)
T 3kvt_A 74 -------------------------DVC---GPLFEEELEFWGLDSNQVEPCCW 99 (115)
T ss_dssp -------------------------SSC---HHHHHHHHHHHTCCGGGBCGGGS
T ss_pred -------------------------ccc---HHHHHHHHHHhCCChHHHHHHHH
Confidence 111 2467888999999887533 454
No 58
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=29.80 E-value=51 Score=22.73 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=25.3
Q ss_pred HHhhhcccCchhHHHHH-HHHHHHHhcCCCHHHHHhhc
Q 030962 109 LILAANYLNIKGLLDLT-CQTVADMIKGKTPEEIRKTF 145 (168)
Q Consensus 109 Ll~AA~~L~I~~L~~~~-~~~ia~~i~~ks~eeir~~f 145 (168)
.+..+.|-.-=.-+..+ +..++.+++|||.+|..++.
T Consensus 53 ~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~ 90 (138)
T 2qq4_A 53 TIADIRFQGQGCAISTASASLMTEAVKGKKVAEALELS 90 (138)
T ss_dssp EEEEEEEEEECCHHHHHHHHHHHHHHTTSBHHHHHHHH
T ss_pred EEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 45555665555444444 44677999999999988865
No 59
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=29.51 E-value=29 Score=23.59 Aligned_cols=34 Identities=24% Similarity=0.632 Sum_probs=24.7
Q ss_pred HHHHHhcCCCHHHHHhhc------CCCC-CCCHHHHHHHHH
Q 030962 128 TVADMIKGKTPEEIRKTF------NIKN-DFTPEEEEEVRR 161 (168)
Q Consensus 128 ~ia~~i~~ks~eeir~~f------~i~~-d~t~ee~~~i~~ 161 (168)
.||..+.|+|+.+.|..+ ++.. .+|+||.+.+..
T Consensus 27 ~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 67 (131)
T 3zqc_A 27 RITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFR 67 (131)
T ss_dssp GGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHH
Confidence 456667789999998865 3443 499998877654
No 60
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=29.45 E-value=49 Score=22.56 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=25.1
Q ss_pred HHhhhcccCchhHHHH-HHHHHHHHhcCCCHHHHHhhc
Q 030962 109 LILAANYLNIKGLLDL-TCQTVADMIKGKTPEEIRKTF 145 (168)
Q Consensus 109 Ll~AA~~L~I~~L~~~-~~~~ia~~i~~ks~eeir~~f 145 (168)
.+..+.|-.-=.-+.. ++..++++++|||.+|..++.
T Consensus 53 ~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~ 90 (129)
T 3lvl_A 53 IIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIK 90 (129)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCC
T ss_pred eEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 4555666555444444 445678999999999997754
No 61
>2rb6_A Uncharacterized protein; NESG, Q8EI81_sheon, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.50A {Shewanella oneidensis} SCOP: b.38.1.6
Probab=28.18 E-value=51 Score=19.70 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=11.3
Q ss_pred CCCCCeEEEEcCCCCeEEe
Q 030962 1 MSSPKMIVLKSCDGESFEV 19 (168)
Q Consensus 1 m~~~~~i~l~S~DG~~~~v 19 (168)
||| .+.+.++||+.+..
T Consensus 1 ~SS--~yvitT~DG~~IvT 17 (61)
T 2rb6_A 1 MSS--QYIMSTKDGKMITS 17 (61)
T ss_dssp -CC--EEEEEETTSCEEEE
T ss_pred CCC--cEEEEeCCCcEEEc
Confidence 554 57777888887754
No 62
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=28.16 E-value=56 Score=22.81 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=25.8
Q ss_pred HHhhhcccCchhHHHHHH-HHHHHHhcCCCHHHHHhhc
Q 030962 109 LILAANYLNIKGLLDLTC-QTVADMIKGKTPEEIRKTF 145 (168)
Q Consensus 109 Ll~AA~~L~I~~L~~~~~-~~ia~~i~~ks~eeir~~f 145 (168)
.+..+.|-.-=.-+..++ ..++.+++|||.+|..++.
T Consensus 55 ~I~d~~f~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~ 92 (147)
T 1xjs_A 55 IVEDAKFEGEGCSISMASASMMTQAIKGKDIETALSMS 92 (147)
T ss_dssp BCCEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHH
T ss_pred eEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 455566655554444444 4677999999999998875
No 63
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=27.96 E-value=20 Score=24.99 Aligned_cols=88 Identities=10% Similarity=0.097 Sum_probs=53.7
Q ss_pred CeEEEEcCCCCeEEecHHHHHHh-H-HHHHHHHhC----CCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 030962 5 KMIVLKSCDGESFEVEEAVALES-T-TIKHMIEDD----CADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGAN 78 (168)
Q Consensus 5 ~~i~l~S~DG~~~~v~~~~a~~S-~-~l~~~l~~~----~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~ 78 (168)
..|+| --.|+.|.+.+..+..- . .|.. .... .....+-+ +=++..++.|+.|+...+-.-+
T Consensus 35 ~~V~L-NVGG~~F~T~~~TL~~~P~S~L~~-~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~~p---------- 101 (140)
T 2nz0_B 35 ELIVL-NVSGRRFQTWRTTLERYPDTLLGS-TEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYP---------- 101 (140)
T ss_dssp CEEEE-EETTEEEEEEHHHHHTCTTSTTTS-GGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBCCC----------
T ss_pred CEEEE-EECCEEEEeeHHHHhcCCCeeecc-cCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcCCC----------
Confidence 34443 44599999999876431 1 1111 0000 01233444 6799999999999997532111
Q ss_pred CCCCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhH-HHHHHHH
Q 030962 79 SNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGL-LDLTCQT 128 (168)
Q Consensus 79 ~~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L-~~~~~~~ 128 (168)
+ ++ .+..|...|.|.+|.+| ++.||..
T Consensus 102 --------------~------~~---~~~~l~eEa~fy~i~~l~l~~CC~~ 129 (140)
T 2nz0_B 102 --------------R------YE---CISAYDDELAFYGILPEIIGDCCYE 129 (140)
T ss_dssp --------------T------TS---CHHHHHHHHHHHTCCGGGBCTTTHH
T ss_pred --------------C------Cc---CHHHHHHHHHHcCCChHHHHHHHHH
Confidence 0 11 25778999999999998 5667753
No 64
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=27.35 E-value=85 Score=22.23 Aligned_cols=34 Identities=12% Similarity=0.331 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHh--------hcCCCCCCCHH
Q 030962 121 LLDLTCQTVADMIKGKTPEEIRK--------TFNIKNDFTPE 154 (168)
Q Consensus 121 L~~~~~~~ia~~i~~ks~eeir~--------~f~i~~d~t~e 154 (168)
++.-.++.+...++|+||+||.+ .+|+..-+||-
T Consensus 87 IvkGL~AlL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSps 128 (155)
T 1ni7_A 87 IVRGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSAS 128 (155)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSSSSCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCch
Confidence 34444555666779999999965 56787778874
No 65
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.52 E-value=40 Score=19.68 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=16.2
Q ss_pred HHHHHHhcCCCHHHHHhhcC
Q 030962 127 QTVADMIKGKTPEEIRKTFN 146 (168)
Q Consensus 127 ~~ia~~i~~ks~eeir~~f~ 146 (168)
..||..+.++|+.+++.++.
T Consensus 35 ~~Ia~~l~~rt~~~~v~~Yy 54 (61)
T 2eqr_A 35 GLIASYLERKSVPDCVLYYY 54 (61)
T ss_dssp HHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 45678889999999988763
No 66
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=32.47 E-value=14 Score=22.82 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCCHHHHHhhcC
Q 030962 125 TCQTVADMIKGKTPEEIRKTFN 146 (168)
Q Consensus 125 ~~~~ia~~i~~ks~eeir~~f~ 146 (168)
+-.+||..+ ++|++|+...|.
T Consensus 38 tfa~iA~~L-nks~~QV~~RF~ 58 (70)
T 2lr8_A 38 TFAYLAAKL-DKNPNQVSERFQ 58 (70)
Confidence 446678788 899999988774
No 67
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=26.47 E-value=45 Score=20.73 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=25.3
Q ss_pred chHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHHHhhcC
Q 030962 102 DQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFN 146 (168)
Q Consensus 102 ~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eeir~~f~ 146 (168)
..++-..|+.|-..++ . -=..||..+.++|+.|+|..|.
T Consensus 22 T~eEd~~Ll~~v~~~G-~-----~W~~IA~~v~~RT~~qcr~r~~ 60 (79)
T 2yus_A 22 TEQETLLLLEALEMYK-D-----DWNKVSEHVGSRTQDECILHFL 60 (79)
T ss_dssp CHHHHHHHHHHHHHSS-S-----CHHHHHHHHSSCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhC-C-----CHHHHHHHcCCCCHHHHHHHHH
Confidence 3444444555544455 1 2356888889999999999654
No 68
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=26.05 E-value=27 Score=26.02 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=11.5
Q ss_pred HHHHHHHhccCCCC
Q 030962 55 KVVEYCKKHVEVPT 68 (168)
Q Consensus 55 ~Ii~wc~~h~~~~~ 68 (168)
.|+.||+||+-...
T Consensus 33 LIL~ycr~~ki~~l 46 (202)
T 1xb4_A 33 IISQYCKTKKIWYM 46 (202)
T ss_dssp HHHHHHHHTTCCEE
T ss_pred HHHHHHHHhCeeEe
Confidence 59999999987654
No 69
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=26.03 E-value=73 Score=22.57 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=26.5
Q ss_pred HHhhhcccCchhHHHHHH-HHHHHHhcCCCHHHHHhhcC
Q 030962 109 LILAANYLNIKGLLDLTC-QTVADMIKGKTPEEIRKTFN 146 (168)
Q Consensus 109 Ll~AA~~L~I~~L~~~~~-~~ia~~i~~ks~eeir~~f~ 146 (168)
.+..+.|-.-=.-+..++ ..++.+++|||.+|..++..
T Consensus 54 ~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 92 (159)
T 1su0_B 54 KIEDIAFAGNGCTISTASSSMMTDAVIGKSKEEALALAD 92 (159)
T ss_dssp SEEEEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 456666666554444444 46779999999999988654
No 70
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.19 E-value=48 Score=20.00 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=16.9
Q ss_pred HHHHHHHhcCCCHHHHHhhc
Q 030962 126 CQTVADMIKGKTPEEIRKTF 145 (168)
Q Consensus 126 ~~~ia~~i~~ks~eeir~~f 145 (168)
-..||..+.|+|..|+|..+
T Consensus 36 W~~IA~~~~~Rt~~qcr~r~ 55 (75)
T 2yum_A 36 WQKIADELGNRTAKQVASQV 55 (75)
T ss_dssp HHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHH
Confidence 45688888999999999866
No 71
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=24.85 E-value=23 Score=21.85 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=17.2
Q ss_pred HHHHHHHhcCCCHHHHHhhcC
Q 030962 126 CQTVADMIKGKTPEEIRKTFN 146 (168)
Q Consensus 126 ~~~ia~~i~~ks~eeir~~f~ 146 (168)
=..||..+-|+|..|+|..|.
T Consensus 44 W~~IA~~vpGRT~~qcr~Ry~ 64 (73)
T 2cqr_A 44 WDKIARCVPSKSKEDCIARYK 64 (73)
T ss_dssp HHHHGGGCSSSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 356888889999999998664
No 72
>2q6f_A Fragment, infectious bronchitis virus (IBV) main protease; coronavirus, 3C-like proteinase, michael acceptor inhibitor, hydrolase; HET: 3IH; 2.00A {Infectious bronchitis virus} PDB: 2q6d_A*
Probab=24.81 E-value=46 Score=26.24 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=62.9
Q ss_pred CcccCCCCHHHHHHHHHHHHhccCCC-------CCCCCCCCCCCCCCCCCCCCcccccccch--hccccchHHHHHHHhh
Q 030962 42 GIPLPNVTGKILAKVVEYCKKHVEVP-------TTQDSNTSGANSNGAATNGGEEDLKSWDT--DFVKVDQATLFDLILA 112 (168)
Q Consensus 42 ~Ipl~~i~s~~L~~Ii~wc~~h~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~wd~--eFl~~~~~~l~~Ll~A 112 (168)
...++.-+--.-..|+.|++-+--.. +..-. ........+.+|-. .|-.+.....++.|.|
T Consensus 190 ~~Q~~~~~~~~T~NVvA~LYAAllng~~~~~~~~~Wl~----------~~~~s~e~fN~WA~~ngft~~~~~~~~~~Laa 259 (309)
T 2q6f_A 190 VAQRVPPDNLVTNNIVAWLYAAIISVKESSFSQPKWLE----------STTVSIEDYNRWASDNGFTPFSTSTAITKLSA 259 (309)
T ss_dssp SCCCCCCCCBCHHHHHHHHHHHHHHC-------CTTSC----------SSCCCHHHHHHHHHHHTBCCCCCCHHHHHHHH
T ss_pred hhhccCcceeeehhHHHHHHHHHHcCcccccccccccc----------cceecHHHHHHHHHhCCCcccchhhHHHHHHH
Confidence 34555555555678899998763221 10100 00123345566643 3544666789999999
Q ss_pred hcccCchhHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHH
Q 030962 113 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEE 157 (168)
Q Consensus 113 A~~L~I~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~ee~~ 157 (168)
..=-.+..|+...- .++.-+.|++ |-....++++|||+|--
T Consensus 260 ~TGVsVe~lL~aI~-~L~~gf~G~~---IlG~~~leDE~Tp~~V~ 300 (309)
T 2q6f_A 260 ITGVDVCKLLRTIM-VKSAQWGSDP---ILGQYNFEDELTPESVF 300 (309)
T ss_dssp HHTCCHHHHHHHHH-HHHHCCCSCC---BTTBSSCCCSCCHHHHH
T ss_pred HhCCcHHHHHHHHH-HHhcCCCCce---ecccccccccCCHHHHH
Confidence 99999999987554 5555556666 44445577889998743
No 73
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=24.40 E-value=21 Score=28.23 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=34.5
Q ss_pred CeEEEEcCCCCeEEe------cHHHHHHhHHHHHHHHhCCC----------CCCcccCCCCHHHHHHHHHHHHh
Q 030962 5 KMIVLKSCDGESFEV------EEAVALESTTIKHMIEDDCA----------DNGIPLPNVTGKILAKVVEYCKK 62 (168)
Q Consensus 5 ~~i~l~S~DG~~~~v------~~~~a~~S~~l~~~l~~~~~----------~~~Ipl~~i~s~~L~~Ii~wc~~ 62 (168)
+..-|+..||.+..+ ...+.+.-..|+.++++... -...-=..|+.+.|+.|++=..+
T Consensus 103 r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~~~~~~~~~I~~RRSiR~F~~~~V~~e~l~~ileaA~~ 176 (322)
T 4eo3_A 103 RSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNKHIEWRRARRALKKDRVPREELELLIKAAHL 176 (322)
T ss_dssp CEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHHHHTSCCHHHHHCCCCCCBCCCCCCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhchhhhHHHHHHHhhhccCCcCccccCHHHHHHHHHHHHh
Confidence 345678899998633 33455566677776653210 01111124778999999987664
No 74
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=24.27 E-value=72 Score=22.17 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHh--------hcCCCCCCCH
Q 030962 122 LDLTCQTVADMIKGKTPEEIRK--------TFNIKNDFTP 153 (168)
Q Consensus 122 ~~~~~~~ia~~i~~ks~eeir~--------~f~i~~d~t~ 153 (168)
+.-.+..+...++|+||+||.+ .+|+...+||
T Consensus 81 vkGl~alL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSp 120 (141)
T 3g0m_A 81 VKGLMAVVFILYHQMTAQDIVHFDVRPWFEKMALAQHLTP 120 (141)
T ss_dssp HHHHHHHHHHHHTTCBHHHHHHCCCHHHHHHHTCGGGSCH
T ss_pred HHHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCc
Confidence 3334445556679999999975 4577766776
No 75
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=24.22 E-value=47 Score=17.02 Aligned_cols=12 Identities=42% Similarity=0.697 Sum_probs=7.5
Q ss_pred CHHHHHHHHHhc
Q 030962 152 TPEEEEEVRREN 163 (168)
Q Consensus 152 t~ee~~~i~~e~ 163 (168)
||||..++++|.
T Consensus 13 tpeelkklkeea 24 (36)
T 2ki0_A 13 TPEELKKLKEEA 24 (36)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 577766666553
No 76
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=24.07 E-value=76 Score=16.19 Aligned_cols=16 Identities=6% Similarity=0.154 Sum_probs=13.5
Q ss_pred hcCCCHHHHHhhcCCC
Q 030962 133 IKGKTPEEIRKTFNIK 148 (168)
Q Consensus 133 i~~ks~eeir~~f~i~ 148 (168)
..|.|..+|.+.|||.
T Consensus 19 ~~g~s~~~IA~~lgis 34 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRS 34 (51)
T ss_dssp HTTCCHHHHHHHHTCC
T ss_pred HcCCCHHHHHHHHCcC
Confidence 4688999999999986
No 77
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=23.97 E-value=57 Score=18.72 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=16.0
Q ss_pred HHHHHHHhc-CCCHHHHHhhc
Q 030962 126 CQTVADMIK-GKTPEEIRKTF 145 (168)
Q Consensus 126 ~~~ia~~i~-~ks~eeir~~f 145 (168)
=..||..+. |+|+.|.|..+
T Consensus 32 W~~IA~~~~~~Rt~~qcr~r~ 52 (58)
T 2elk_A 32 WADIADYVGNARTKEECRDHY 52 (58)
T ss_dssp HHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHH
Confidence 356788888 89999999854
No 78
>3tlo_A 3CL-Pro, 3CLP, 3C-like proteinase; hydrolysis, hydrolase, protein binding; 1.60A {Human coronavirus} PDB: 2zu2_A 1p9s_A
Probab=23.31 E-value=26 Score=27.53 Aligned_cols=103 Identities=14% Similarity=0.199 Sum_probs=64.2
Q ss_pred CcccCCCCHHHHHHHHHHHHhccCCCCCC-CCCCCCCCCCCCCCCCCcccccccch--hccccchHHHHHHHhhhcccCc
Q 030962 42 GIPLPNVTGKILAKVVEYCKKHVEVPTTQ-DSNTSGANSNGAATNGGEEDLKSWDT--DFVKVDQATLFDLILAANYLNI 118 (168)
Q Consensus 42 ~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~wd~--eFl~~~~~~l~~Ll~AA~~L~I 118 (168)
...++.-+--.-..|+.|++-+--+..+. ..+ .....+.+.+|-. .|-.+.....+++|.|..=-++
T Consensus 190 v~Q~~~~d~~~T~NVvAwLYAAilng~~wfl~~----------~~~sv~dfN~WA~~ngft~~~~~~~~~~Laa~TGVsV 259 (303)
T 3tlo_A 190 SLQVESANLMLSDNVVAFLYAALLNGCRWWLCS----------TRVNVDGFNEWAMANGYTSVSSVECYSILAAKTGVSV 259 (303)
T ss_dssp CCCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCC----------CCCCHHHHHHHHHHHTBCCCCCSGGGHHHHHHHTCCH
T ss_pred hhcccCccceeehhHHHHHHHHHHcCCCeeecc----------ceecHHHHHHHHHhcCccccccchHHHHHHHHhCCcH
Confidence 34454444555678999998875433221 110 0123445566743 3544666678999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHHH
Q 030962 119 KGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE 158 (168)
Q Consensus 119 ~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~ee~~~ 158 (168)
..|+...-+ ++.-+.|++ |-....++++|||+|--+
T Consensus 260 ~~lL~aI~~-L~~g~~G~~---IlG~~~leDE~Tp~~V~~ 295 (303)
T 3tlo_A 260 EQLLASIQH-LHEGFGGKN---ILGYSSLCDEFTLAEVVK 295 (303)
T ss_dssp HHHHHHHHH-HTTCCTTCC---BTTBSSCCCCCCHHHHHH
T ss_pred HHHHHHHHH-HhcCCCCce---ecccccccccCCHHHHHH
Confidence 999886654 555445555 555566888899987544
No 79
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=23.16 E-value=73 Score=23.89 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHhhcCCCCC-CCHHHHHHH
Q 030962 120 GLLDLTCQTVADMIKGKTPEEIRKTFNIKND-FTPEEEEEV 159 (168)
Q Consensus 120 ~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d-~t~ee~~~i 159 (168)
.|+..+|-.||.++....+-.++.+..+.++ +|.+|..+.
T Consensus 95 qLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~m 135 (254)
T 2f2c_A 95 QKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQ 135 (254)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHH
Confidence 5888899999999987544445555666544 888764443
No 80
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=23.02 E-value=79 Score=20.82 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHHHHHH
Q 030962 121 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRR 161 (168)
Q Consensus 121 L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~ee~~~i~~ 161 (168)
|-......||+. .=.|++|+|.++.-... +|+.++|-.
T Consensus 64 l~e~~a~~I~nl-~P~t~dElraii~~~~~--~eel~~ILd 101 (107)
T 1go3_F 64 IDEKTAVKIADI-LPEDLDDLRAIYYKREL--PENAEEILE 101 (107)
T ss_dssp CCHHHHHHHHHH-CCCSHHHHHHHSTTSCC--CTTHHHHHH
T ss_pred CCHHHHHHHHHh-CCCCHHHHHHHHhcccC--cHHHHHHHH
Confidence 667777777774 56899999999887653 777776654
No 81
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=22.97 E-value=22 Score=23.33 Aligned_cols=81 Identities=7% Similarity=0.072 Sum_probs=49.0
Q ss_pred CCCeEEecHHHHHHh-H-HHHHHHHhC----CCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCC
Q 030962 13 DGESFEVEEAVALES-T-TIKHMIEDD----CADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATNG 86 (168)
Q Consensus 13 DG~~~~v~~~~a~~S-~-~l~~~l~~~----~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~~~ 86 (168)
-|+.|.+++..+..- . .|... ... .....+-+ +=++..++.|+.|+...+-.-+
T Consensus 7 GG~~f~t~~~TL~~~p~s~L~~~-~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l~~p------------------ 66 (105)
T 1nn7_A 7 SGTRFQTWQDTLERYPDTLLGSS-ERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLHYP------------------ 66 (105)
T ss_dssp TTEEEEECHHHHHTSCSSSTTSG-GGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBCCC------------------
T ss_pred CCEEEEEeHHHHhcCCCcccccc-CCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCCCCC------------------
Confidence 488899888766431 1 12111 110 01233334 6688999999999987431111
Q ss_pred CcccccccchhccccchHHHHHHHhhhcccCchhH-HHHHHHH
Q 030962 87 GEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGL-LDLTCQT 128 (168)
Q Consensus 87 ~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L-~~~~~~~ 128 (168)
+ ++ .+-.|...|.|.+|.+| ++.||..
T Consensus 67 ------~------~~---~~~~l~~Ea~fy~i~~l~~~~cc~~ 94 (105)
T 1nn7_A 67 ------R------HE---CISAYDEELAFFGLIPEIIGDCCYE 94 (105)
T ss_dssp ------T------TS---CHHHHHHHHHHHTCCSCCBCHHHHH
T ss_pred ------C------Cc---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 0 11 14678999999999998 4777764
No 82
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=22.67 E-value=52 Score=20.91 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=12.6
Q ss_pred CCCCC-eEEEEcCCCCeEEec
Q 030962 1 MSSPK-MIVLKSCDGESFEVE 20 (168)
Q Consensus 1 m~~~~-~i~l~S~DG~~~~v~ 20 (168)
|++.. .|++++.||..+.+.
T Consensus 1 ~~~~~i~ikVk~~~g~~v~~~ 21 (91)
T 2io0_B 1 MANDHINLKVAGQDGSVVQFK 21 (91)
T ss_dssp ---CEEEEEEECTTSCEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEE
Confidence 56654 588889999876654
No 83
>2jn0_A Hypothetical lipoprotein YGDR; solution structure, PSI-2 target, structural genomics, protein structure initiative; NMR {Escherichia coli} SCOP: b.38.1.6 PDB: 3fif_A
Probab=22.16 E-value=50 Score=19.75 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=9.4
Q ss_pred CCCCCeEEEEcCCCCeEEe
Q 030962 1 MSSPKMIVLKSCDGESFEV 19 (168)
Q Consensus 1 m~~~~~i~l~S~DG~~~~v 19 (168)
||| ...+.++||+.+..
T Consensus 1 ~Ss--~yvitT~DG~~IvT 17 (61)
T 2jn0_A 1 MSS--DYVMATKDGRMILT 17 (61)
T ss_dssp -----CCEEEETTSCEEEB
T ss_pred CCC--cEEEEeCCCcEEEc
Confidence 454 36667788877743
No 84
>2k57_A Putative lipoprotein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas syringae PV} SCOP: b.38.1.6
Probab=22.13 E-value=77 Score=18.88 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=11.1
Q ss_pred CCCCCeEEEEcCCCCeEEe
Q 030962 1 MSSPKMIVLKSCDGESFEV 19 (168)
Q Consensus 1 m~~~~~i~l~S~DG~~~~v 19 (168)
||| .+.+.++||+.+.-
T Consensus 1 ~SS--~yvitt~DG~~IvT 17 (61)
T 2k57_A 1 MAS--PTVITLNDGREIQA 17 (61)
T ss_dssp CCC--CEEEEESSSCEEEE
T ss_pred CCC--ceEEEeCCCcEEEc
Confidence 454 46677788887754
No 85
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=22.11 E-value=33 Score=24.96 Aligned_cols=14 Identities=21% Similarity=0.603 Sum_probs=11.2
Q ss_pred HHHHHHHhccCCCC
Q 030962 55 KVVEYCKKHVEVPT 68 (168)
Q Consensus 55 ~Ii~wc~~h~~~~~ 68 (168)
.|+.||+||+-...
T Consensus 36 LIl~ycr~~k~~~l 49 (176)
T 3cuq_C 36 LVLSFCRLHKQSSM 49 (176)
T ss_dssp HHHHHHHHHTCCEE
T ss_pred HHHHHHHHhCeeEe
Confidence 49999999986543
No 86
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=21.65 E-value=83 Score=21.84 Aligned_cols=35 Identities=23% Similarity=0.511 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCHHHHHhhcC------CC-CCCCHHHHHHHHH
Q 030962 127 QTVADMIKGKTPEEIRKTFN------IK-NDFTPEEEEEVRR 161 (168)
Q Consensus 127 ~~ia~~i~~ks~eeir~~f~------i~-~d~t~ee~~~i~~ 161 (168)
..||..+.|+|..++|..+. +. ..+|+||...+..
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 123 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 123 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHH
Confidence 46788889999999998653 33 3489988776655
No 87
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=21.39 E-value=66 Score=22.80 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=25.1
Q ss_pred HHhhhcccCchhHHH-HHHHHHHHHhcCCCHHHHHhhcC
Q 030962 109 LILAANYLNIKGLLD-LTCQTVADMIKGKTPEEIRKTFN 146 (168)
Q Consensus 109 Ll~AA~~L~I~~L~~-~~~~~ia~~i~~ks~eeir~~f~ 146 (168)
.+..+.|-.-=.-+. .++..++.+++|||.+|..++..
T Consensus 52 ~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~EA~~i~~ 90 (157)
T 2z7e_A 52 VIEDVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTY 90 (157)
T ss_dssp BEEEEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHCCH
T ss_pred eEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 455555555443333 34556789999999999987643
No 88
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=21.11 E-value=73 Score=21.50 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=35.8
Q ss_pred CCeEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC---CC------CCcccC-C---CCHHHHHHHHHHHHhccC
Q 030962 4 PKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDC---AD------NGIPLP-N---VTGKILAKVVEYCKKHVE 65 (168)
Q Consensus 4 ~~~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~---~~------~~Ipl~-~---i~s~~L~~Ii~wc~~h~~ 65 (168)
.+.+++.|.||+.+.|...-- ...-+...++-.| .+ ..+++. + ++-..-..+++.++.++.
T Consensus 38 g~~~~l~s~Dg~~Vtv~l~~p-~~~~l~~~vEViG~V~~~~tI~~~~~~~fg~~~~~fD~~~yn~lv~l~~~~~~ 111 (121)
T 3kdf_A 38 GKMFILSDGEGKNGTIELMEP-LDEEISGIVEVVGRVTAKATILCTSYVQFKEDSHPFDLGLYNEAVKIIHDFPQ 111 (121)
T ss_dssp SSEEEEECTTSCEEEEECSSC-CSSCCCSEEEEEEEECTTSCEEEEEEEECCCSSSCCCHHHHHHHHHHHHHCGG
T ss_pred CCEEEEEeCCCCEEEEEeCCC-CCcccCcEEEEEEEECCCCeEEEEEEEecCCCCcccCHHHHHHHHHHHhcCCc
Confidence 468999999999999875420 0000111222111 11 113333 4 888899999999887654
No 89
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=21.05 E-value=66 Score=19.28 Aligned_cols=19 Identities=11% Similarity=0.263 Sum_probs=16.2
Q ss_pred HHHHHHhcCCCHHHHHhhc
Q 030962 127 QTVADMIKGKTPEEIRKTF 145 (168)
Q Consensus 127 ~~ia~~i~~ks~eeir~~f 145 (168)
..||..+.|+|..++|..+
T Consensus 32 ~~Ia~~~~~Rt~~q~k~r~ 50 (72)
T 2cu7_A 32 TKISKLIGSRTVLQVKSYA 50 (72)
T ss_dssp HHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHH
Confidence 5678889999999999864
No 90
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=21.01 E-value=74 Score=26.48 Aligned_cols=103 Identities=11% Similarity=0.178 Sum_probs=55.9
Q ss_pred cCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcccccccchhccccch-HHHHHHHhhhcccCchhHH-
Q 030962 45 LPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQ-ATLFDLILAANYLNIKGLL- 122 (168)
Q Consensus 45 l~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~eFl~~~~-~~l~~Ll~AA~~L~I~~L~- 122 (168)
+|+=.+.-++++-++...-....| ++. ...+..+..|...| .+|. ..++.+...+ +++.+
T Consensus 186 ~~~~~~~r~e~~k~~a~~~~~~~p-~nv------------r~~~v~v~~f~y~v-~l~d~g~~~~~~rt~----vrpyvg 247 (505)
T 3few_X 186 FNKDESQRQEKAKQQAEDAWDRLP-PNV------------RKFDVDVEQFHYLV-VLDDYGNVLSVTRTG----VRPYVG 247 (505)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHTSG-GGC------------CEEEEEETTEEEEE-EECTTCCEEEEEEEE----CCCCCT
T ss_pred CCccchHHHHHHHHHHHHhhhhCC-Cch------------heeeecccceEEEE-EEccCcchhhhhhhc----cccccc
Confidence 556667778888888776544333 221 01334455554443 2222 2222222222 22222
Q ss_pred -HHHHHHHHHHhcCCCHHHHHhhcCCCCCCC-HHHHHHHHHhccc
Q 030962 123 -DLTCQTVADMIKGKTPEEIRKTFNIKNDFT-PEEEEEVRRENQW 165 (168)
Q Consensus 123 -~~~~~~ia~~i~~ks~eeir~~f~i~~d~t-~ee~~~i~~e~~w 165 (168)
+-+-+-|.+++.-|+|+||-+.+|+..|.+ .+++.+.+-...|
T Consensus 248 sekakagim~k~~hktpeeiyealgfn~de~qrq~~ak~~a~d~~ 292 (505)
T 3few_X 248 SEKAKAGIMDKVDHKTPEEIYEALGFNNEEPQRQNQAKKAAYDVF 292 (505)
T ss_dssp THHHHHHHHHHTTCCCHHHHHHHHTTTTTHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHhhccCCHHHHHHHhCCCccchHHHHHHHHHHHHHH
Confidence 123345677899999999999999998853 2344444444444
No 91
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=20.90 E-value=93 Score=18.20 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=13.8
Q ss_pred HhcCCCHHHHHhhcCCC
Q 030962 132 MIKGKTPEEIRKTFNIK 148 (168)
Q Consensus 132 ~i~~ks~eeir~~f~i~ 148 (168)
.+.|+|..||-+.+|++
T Consensus 28 ~~~g~s~~eIA~~l~is 44 (79)
T 1x3u_A 28 VVAGLPNKSIAYDLDIS 44 (79)
T ss_dssp HTTTCCHHHHHHHTTSC
T ss_pred HHcCCCHHHHHHHHCcC
Confidence 35788888998888886
No 92
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=20.68 E-value=41 Score=20.82 Aligned_cols=25 Identities=8% Similarity=0.101 Sum_probs=19.2
Q ss_pred CCCcccCCCCHHHHHHHHHHHHhccCCCC
Q 030962 40 DNGIPLPNVTGKILAKVVEYCKKHVEVPT 68 (168)
Q Consensus 40 ~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~ 68 (168)
...|++ |.....++.||+.|..+++
T Consensus 35 ~~RikV----S~aa~~L~~Yce~~~~~Dp 59 (73)
T 1got_G 35 LERMLV----SKCCEEFRDYVEERSGEDP 59 (73)
T ss_dssp CCCCCH----HHHHHHHHHHHHHHGGGCH
T ss_pred CchhhH----HHHHHHHHHHHHhcCCCCC
Confidence 455666 8899999999999865443
No 93
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=20.32 E-value=48 Score=25.49 Aligned_cols=34 Identities=6% Similarity=0.077 Sum_probs=30.0
Q ss_pred cchHHHHHHHhhhcccCchhHHHHHHHHHHHHhc
Q 030962 101 VDQATLFDLILAANYLNIKGLLDLTCQTVADMIK 134 (168)
Q Consensus 101 ~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~ 134 (168)
++.+++..++..|...+.+.|.+.|..+|+..+.
T Consensus 272 ~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~ 305 (312)
T 3hqi_A 272 LSVENAAEILILADLHSADQLKTQAVDFINYHAT 305 (312)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999987554
Done!