BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030963
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4PAZ|A Chain A, Oxidized Mutant P80a Pseudoazurin From A. Faecalis
pdb|5PAZ|A Chain A, Reduced Mutant P80a Pseudoazurin From A. Faecalis
Length = 123
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 1 MVF---YFKARPEAGDYTIFMGLDKYENEELIKYGFPE 35
MVF Y KA P GD F+ +DK N E IK PE
Sbjct: 16 MVFEPAYIKANP--GDTVTFIPVDKGHNVESIKDMIPE 51
>pdb|6PAZ|A Chain A, Oxidized Mutant P80i Pseudoazurin From A. Faecalis
pdb|7PAZ|A Chain A, Reduced Mutant P80i Pseudoazurin From A. Faecalis
Length = 123
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 1 MVF---YFKARPEAGDYTIFMGLDKYENEELIKYGFPE 35
MVF Y KA P GD F+ +DK N E IK PE
Sbjct: 16 MVFEPAYIKANP--GDTVTFIPVDKGHNVESIKDMIPE 51
>pdb|4GTX|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
pdb|4GTX|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
pdb|4GTY|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
pdb|4GTY|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
pdb|4GTZ|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
pdb|4GTZ|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
Length = 823
Score = 27.3 bits (59), Expect = 4.7, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 70 CAQLVKANSIQGNKVNNIDVVYTPWANLKKT 100
C + V N G+ VNN+ VVY P A L+ T
Sbjct: 331 CKKYVYLNKYLGD-VNNVKVVYGPAARLRPT 360
>pdb|4GTW|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Amp
pdb|4GTW|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Amp
Length = 823
Score = 27.3 bits (59), Expect = 4.7, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 70 CAQLVKANSIQGNKVNNIDVVYTPWANLKKT 100
C + V N G+ VNN+ VVY P A L+ T
Sbjct: 331 CKKYVYLNKYLGD-VNNVKVVYGPAARLRPT 360
>pdb|4B56|A Chain A, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
pdb|4B56|B Chain B, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
Length = 820
Score = 26.9 bits (58), Expect = 4.8, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 70 CAQLVKANSIQGNKVNNIDVVYTPWANLKKT 100
C + V N G+ VNN+ VVY P A L+ T
Sbjct: 327 CKKYVYLNKYLGD-VNNVKVVYGPAARLRPT 356
>pdb|1PAZ|A Chain A, Refinement Of The Structure Of Pseudoazurin From
Alcaligenes Faecalis S-6 At 1.55 Angstroms Resolution
pdb|1PZA|A Chain A, The Crystal Structures Of Reduced Pseudoazurin From
Alcaligenes Faecalis S-6 At Two Ph Values
pdb|1PZB|A Chain A, The Crystal Structures Of Reduced Pseudoazurin From
Alcaligenes Faecalis S-6 At Two Ph Values
pdb|1PZC|A Chain A, Apo-Pseudoazurin (Metal Free Protein)
pdb|3PAZ|A Chain A, Reduced Native Pseudoazurin From A. Faecalis
pdb|8PAZ|A Chain A, Oxidized Native Pseudoazurin From A. Faecalis
pdb|2P80|D Chain D, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|3NYK|A Chain A, The Structure Of Cobalt-Substituted Pseudoazurin From
Alcaligenes Faecalis
Length = 123
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 1 MVF---YFKARPEAGDYTIFMGLDKYENEELIKYGFPE 35
MVF Y KA P GD F+ +DK N E IK PE
Sbjct: 16 MVFEPAYIKANP--GDTVTFIPVDKGHNVESIKDMIPE 51
>pdb|2Y7C|A Chain A, Atomic Model Of The Ocr-Bound Methylase Complex From The
Type I Restriction-Modification Enzyme Ecoki (M2s1).
Based On Fitting Into Em Map 1534.
pdb|2Y7H|A Chain A, Atomic Model Of The Dna-Bound Methylase Complex From The
Type I Restriction-Modification Enzyme Ecoki (M2s1).
Based On Fitting Into Em Map 1534
Length = 464
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 68 EDCAQLVKANSIQGNKVNNIDVVYTP 93
+D L++AN+IQ K + D+V+ P
Sbjct: 38 DDYLPLIRANNIQNGKFDTTDLVFVP 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,492,314
Number of Sequences: 62578
Number of extensions: 171323
Number of successful extensions: 473
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 471
Number of HSP's gapped (non-prelim): 13
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)