Query 030963
Match_columns 168
No_of_seqs 187 out of 935
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:11:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3272 Predicted coiled-coil 100.0 3.8E-52 8.3E-57 335.8 13.9 165 1-165 1-166 (207)
2 PF05670 DUF814: Domain of unk 100.0 1.5E-32 3.3E-37 198.7 9.8 89 4-99 1-90 (90)
3 COG1293 Predicted RNA-binding 99.9 4.4E-27 9.6E-32 217.2 11.7 106 11-124 447-553 (564)
4 KOG2030 Predicted RNA-binding 99.7 1.9E-17 4.1E-22 156.1 10.9 105 2-114 496-607 (911)
5 KOG0407 40S ribosomal protein 70.1 9.4 0.0002 29.3 4.4 62 18-79 5-74 (139)
6 PF03460 NIR_SIR_ferr: Nitrite 36.9 58 0.0013 21.3 3.5 27 48-78 11-37 (69)
7 TIGR02544 III_secr_YscJ type I 35.2 1.4E+02 0.003 24.3 6.1 60 33-97 131-191 (193)
8 PRK12756 phospho-2-dehydro-3-d 29.9 1.7E+02 0.0037 26.5 6.2 78 38-124 219-303 (348)
9 PRK12822 phospho-2-dehydro-3-d 29.7 1.7E+02 0.0037 26.5 6.2 79 37-124 219-304 (356)
10 PRK04203 rpl1P 50S ribosomal p 28.5 1.6E+02 0.0035 24.2 5.5 64 62-125 2-67 (215)
11 COG3553 Uncharacterized protei 27.5 2.6E+02 0.0056 20.7 6.5 64 63-134 10-73 (96)
12 PF11385 DUF3189: Protein of u 27.1 21 0.00046 28.1 0.0 17 10-26 47-63 (148)
13 PF09941 DUF2173: Uncharacteri 24.9 1.4E+02 0.003 22.5 4.1 36 43-78 8-47 (108)
14 KOG0536 Flavohemoprotein b5+b5 24.8 56 0.0012 25.9 2.0 33 25-57 72-105 (145)
15 PHA03034 hypothetical protein; 24.6 65 0.0014 25.0 2.3 20 1-24 1-20 (145)
16 PF09981 DUF2218: Uncharacteri 23.9 2.5E+02 0.0055 19.9 5.2 59 67-134 11-69 (89)
17 PF08111 Pea-VEAacid: Pea-VEAa 23.5 29 0.00063 17.1 0.1 6 44-49 4-9 (15)
18 PRK06007 fliF flagellar MS-rin 23.3 2.4E+02 0.0052 26.6 6.3 63 32-98 158-221 (542)
19 PF07946 DUF1682: Protein of u 23.1 1E+02 0.0022 26.9 3.5 22 42-68 157-178 (321)
20 TIGR02933 nifM_nitrog nitrogen 22.8 1.7E+02 0.0036 24.5 4.7 85 69-164 158-249 (256)
21 COG0722 AroG 3-deoxy-D-arabino 22.2 1.4E+02 0.0029 27.0 4.1 78 39-124 221-305 (351)
22 PF02056 Glyco_hydro_4: Family 21.1 1.6E+02 0.0034 24.0 4.1 44 40-93 22-65 (183)
23 PTZ00397 macrophage migration 20.5 3.4E+02 0.0073 19.6 6.0 58 34-95 46-104 (116)
24 TIGR02435 CobG precorrin-3B sy 20.2 2.6E+02 0.0057 24.9 5.6 49 40-99 250-298 (390)
25 PF00282 Pyridoxal_deC: Pyrido 20.0 44 0.00094 29.7 0.6 24 27-50 215-238 (373)
No 1
>KOG3272 consensus Predicted coiled-coil protein [General function prediction only]
Probab=100.00 E-value=3.8e-52 Score=335.82 Aligned_cols=165 Identities=73% Similarity=1.112 Sum_probs=160.4
Q ss_pred CeEEEEecccCCCeEEEEeCChHHHHHHHHhcCCCceeeecccCCccEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhCcC
Q 030963 1 MVFYFKARPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQ 80 (168)
Q Consensus 1 mv~~F~s~~~s~g~~I~vGRn~~eNe~L~k~a~~~DlWfHv~~~pGaHViLr~~~g~~~~~ip~~~l~~AA~Laa~~Sk~ 80 (168)
|||||.|.++.++++||+|+++.+|+.|++|++|+|+|||+++.++||||||+.+||++++||.++|.+|||||+++||+
T Consensus 1 mv~~~~s~~t~~~~~i~mg~dk~en~~lIk~g~~e~Vwfhv~~~sS~hvyl~l~~~qtiddip~~vL~DC~QLvKaNSIQ 80 (207)
T KOG3272|consen 1 MVFYFKSNPTEPPYMIYMGKDKFENEELIKWGWPEDVWFHVDKLSSAHVYLRLREGQTIDDIPEFVLEDCAQLVKANSIQ 80 (207)
T ss_pred CceEeccccCCCCeeEEEeecccchhHHHHcCCccceEEEeecccccceeeeecCCCCcccccHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEecCceecCCCCCcceEEEcCceEEEEEeeecCcHHHHHHHhccccccc-ccHHHHHHHHHHHHHHHHH
Q 030963 81 GNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKMVRTVKVEKRINEIVNRLNKTKVERK-PDLKAEREAANAAERAERK 159 (168)
Q Consensus 81 ~~~~~~V~V~yt~~knv~K~~~~~~G~V~~~~~k~v~~~~v~~~~~~~v~rL~kt~~e~~-~~~~~~~~~~~~~~~~~~~ 159 (168)
|++.++|+|.||+|+||+|+++|.||||+|++.+.|+++.|..++|+|+|||+||++|.+ |||.++|+++++++|.+.+
T Consensus 81 G~Kmnnv~VvYT~w~NLKKt~~M~~Gqv~fh~~k~vr~~~~~~r~Nei~NrL~kTkve~~~~d~~~lrEard~~er~e~k 160 (207)
T KOG3272|consen 81 GNKMNNVEVVYTPWSNLKKTADMDVGQVGFHSTKQVRRIVVEKRINEIVNRLAKTKVERFKPDFAALREARDAKERQEIK 160 (207)
T ss_pred cccccceeEEechhHhhcccCCCCcccccchhhhheeeeeecchHHHHHHHHhhhhHhhcchhHHHHHHHHhhhhhhhHH
Confidence 999999999999999999999999999999999999999999999999999999999988 9999999999999998888
Q ss_pred HHHhhh
Q 030963 160 LQLRDK 165 (168)
Q Consensus 160 ~~~~~~ 165 (168)
+..+|+
T Consensus 161 ~~~~Er 166 (207)
T KOG3272|consen 161 KIEQER 166 (207)
T ss_pred HHHHhh
Confidence 776654
No 2
>PF05670 DUF814: Domain of unknown function (DUF814); InterPro: IPR008532 This domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity. This annotation comes from O34693 from SWISSPROT where the N-terminal region is involved in this activity []. Hence the activity of this C-terminal domain is unknown. This domain contains a conserved motif D/E-X-W/Y-X-H that may be functionally important.
Probab=99.98 E-value=1.5e-32 Score=198.74 Aligned_cols=89 Identities=36% Similarity=0.578 Sum_probs=81.4
Q ss_pred EEEecccCCCeEEEEeCChHHHHHH-HHhcCCCceeeecccCCccEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhCcCCC
Q 030963 4 YFKARPEAGDYTIFMGLDKYENEEL-IKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGN 82 (168)
Q Consensus 4 ~F~s~~~s~g~~I~vGRn~~eNe~L-~k~a~~~DlWfHv~~~pGaHViLr~~~g~~~~~ip~~~l~~AA~Laa~~Sk~~~ 82 (168)
||+| ++|++|+||||+.|||.| +++++++|||||++++||||||||++++ +.++++|++||+||++||++++
T Consensus 1 wF~s---~~g~~i~vGrn~~eNe~L~~k~~~~~D~wfH~~~~pg~hvil~~~~~----~~~~~~l~~AA~laa~~Ska~~ 73 (90)
T PF05670_consen 1 WFIS---SDGFKIIVGRNAKENEMLTKKYARPNDLWFHADDFPGPHVILRNNPG----DEPPPTLQEAAQLAASYSKAWK 73 (90)
T ss_pred CEEe---cCCeEEEEeCCHHHHHHHHHHhhhhcceeEeccCCCCCEEEEECCCC----ccchHHHHHHHHHHHHhCHhhc
Confidence 5666 589999999999999999 8999999999999999999999999865 3455599999999999997678
Q ss_pred CCCceEEEEEecCceec
Q 030963 83 KVNNIDVVYTPWANLKK 99 (168)
Q Consensus 83 ~~~~V~V~yt~~knv~K 99 (168)
...++.|+||+++||+|
T Consensus 74 ~~~~v~V~yt~~k~v~K 90 (90)
T PF05670_consen 74 KGEKVEVDYTQGKYVKK 90 (90)
T ss_pred cCCCeEEEEeehHhccC
Confidence 99999999999999987
No 3
>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]
Probab=99.94 E-value=4.4e-27 Score=217.18 Aligned_cols=106 Identities=27% Similarity=0.446 Sum_probs=99.2
Q ss_pred CCCeEEEEeCChHHHHHH-HHhcCCCceeeecccCCccEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhCcCCCCCCceEE
Q 030963 11 AGDYTIFMGLDKYENEEL-IKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDV 89 (168)
Q Consensus 11 s~g~~I~vGRn~~eNe~L-~k~a~~~DlWfHv~~~pGaHViLr~~~g~~~~~ip~~~l~~AA~Laa~~Sk~~~~~~~V~V 89 (168)
++|+.|++|||+.|||.| .+++.++|+|||++++|||||+|++. |. ++|+++|.+||+||++||+ |++++.++|
T Consensus 447 s~Gf~vi~Grna~qNe~l~~k~~~~~DlwfHa~~~~gshvvik~~-~~---~~~e~ti~eAA~~Aa~~Sk-a~~~~~v~v 521 (564)
T COG1293 447 SDGFLVIGGRNAKQNEELVKKYAEKDDLWFHADDIPGSHVVIKTE-GK---EPSEETILEAAQLAASYSK-AWKSGLVPV 521 (564)
T ss_pred cCCeEEEEecCcccchHHHHhhcccCcEEEEccCCCCCeEEEeCC-CC---CCChHHHHHHHHHHHHhch-HhhcCCCce
Confidence 479999999999999999 79999999999999999999999986 33 7999999999999999996 577888999
Q ss_pred EEEecCceecCCCCCcceEEEcCceEEEEEeeecC
Q 030963 90 VYTPWANLKKTASMDVGQVGFHNPKMVRTVKVEKR 124 (168)
Q Consensus 90 ~yt~~knv~K~~~~~~G~V~~~~~k~v~~~~v~~~ 124 (168)
+||.++++.++++++||+|+|++.++|+ +.++
T Consensus 522 d~t~vk~vqv~K~a~~G~vl~~g~~~I~---~k~~ 553 (564)
T COG1293 522 DYTWVKPVQVPKGAKSGEVLYKGQKTIR---GKRD 553 (564)
T ss_pred EEEEEcccccCCCCCCceEEecCcEEEE---Eccc
Confidence 9999999999999999999999999997 7776
No 4
>KOG2030 consensus Predicted RNA-binding protein [General function prediction only]
Probab=99.73 E-value=1.9e-17 Score=156.14 Aligned_cols=105 Identities=23% Similarity=0.307 Sum_probs=90.0
Q ss_pred eEEEEecccCCCeEEEEeCChHHHHHH-HHhcCCCceeeecccCCccEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhCcC
Q 030963 2 VFYFKARPEAGDYTIFMGLDKYENEEL-IKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQ 80 (168)
Q Consensus 2 v~~F~s~~~s~g~~I~vGRn~~eNe~L-~k~a~~~DlWfHv~~~pGaHViLr~~~g~~~~~ip~~~l~~AA~Laa~~Sk~ 80 (168)
.+||.| |+||+|++|||++|||.| -+|..|+|||||++-..+|||||++++++ ++|+.+|.+||.+|.+||++
T Consensus 496 f~wFiS---SEg~LVi~GrdaqQnEllvkky~~~~DiY~had~~gaSsviIkN~~~~---eipp~TL~eAg~ma~~~S~a 569 (911)
T KOG2030|consen 496 FHWFIS---SEGYLVIGGRDAQQNELLVKKYLEPGDIYVHADLHGASSVIIKNPPKT---EIPPKTLEEAGSMALCYSKA 569 (911)
T ss_pred eeEEEe---cCcEEEEcCCChhhhhHHHHhhCCCCCeEEecccCCCceEEEeCCCCC---CCChhhHHHHHHHHhHHhhh
Confidence 368888 699999999999999999 59999999999998777789999998875 89999999999999999975
Q ss_pred CCCCCce--EEEEEecCceecCCC----CCcceEEEcCce
Q 030963 81 GNKVNNI--DVVYTPWANLKKTAS----MDVGQVGFHNPK 114 (168)
Q Consensus 81 ~~~~~~V--~V~yt~~knv~K~~~----~~~G~V~~~~~k 114 (168)
++.+| ..-|+...+|+|+.+ .+.|.+-..+.+
T Consensus 570 --WdakvvssaWwv~~dqVSKtaptgeyL~~GSFmIrgkk 607 (911)
T KOG2030|consen 570 --WDAKVVSSAWWVYPDQVSKTAPTGEYLPTGSFMIRGKK 607 (911)
T ss_pred --hcccccccceEEecccccccCCCCccccccceEEeccc
Confidence 45554 344999999999876 467777666665
No 5
>KOG0407 consensus 40S ribosomal protein S14 [Translation, ribosomal structure and biogenesis]
Probab=70.12 E-value=9.4 Score=29.35 Aligned_cols=62 Identities=24% Similarity=0.295 Sum_probs=46.8
Q ss_pred EeCChHHHHHHH----HhcCCCceeeecccCCccEEEEEeCCCCCC----CCCCHHHHHHHHHHHHHhCc
Q 030963 18 MGLDKYENEELI----KYGFPEDIWFHVDKMSSAHVYLRLHKGQTI----DDISEGVLEDCAQLVKANSI 79 (168)
Q Consensus 18 vGRn~~eNe~L~----k~a~~~DlWfHv~~~pGaHViLr~~~g~~~----~~ip~~~l~~AA~Laa~~Sk 79 (168)
+|-...|++.++ -|+..+|-|.|+-|++|.-.|.|-..|... ++-++-.-..|||=++.-.+
T Consensus 5 lg~q~~e~~~vfgvahi~asfndtfvhitdlsg~eti~rvtggmkvkadrdesspyaamlaaqdva~kck 74 (139)
T KOG0407|consen 5 LGPQVREGEQVFGVAHIFASFNDTFVHVTDLSGKETIVRVTGGMKVKADRDESSPYAAMLAAQDVAAKCK 74 (139)
T ss_pred ccchhcccceeeeEEEEEeecccceEEEeccCCceEEEEecCCeEEecccccCChHHHHHHHHHHHHHHH
Confidence 355566777764 378889999999999999999999877622 35667777777877776664
No 6
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=36.94 E-value=58 Score=21.31 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=22.3
Q ss_pred EEEEEeCCCCCCCCCCHHHHHHHHHHHHHhC
Q 030963 48 HVYLRLHKGQTIDDISEGVLEDCAQLVKANS 78 (168)
Q Consensus 48 HViLr~~~g~~~~~ip~~~l~~AA~Laa~~S 78 (168)
+|-++.+.| .++.+.+...|++|..|.
T Consensus 11 ~v~~~~~~G----~i~~~~l~~la~ia~~yg 37 (69)
T PF03460_consen 11 MVRIRIPGG----RISAEQLRALAEIAEKYG 37 (69)
T ss_dssp EEEEB-GGG----EEEHHHHHHHHHHHHHHS
T ss_pred EEEEeCCCE----EECHHHHHHHHHHHHHhC
Confidence 667777766 689999999999999888
No 7
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF.
Probab=35.23 E-value=1.4e+02 Score=24.34 Aligned_cols=60 Identities=28% Similarity=0.385 Sum_probs=40.0
Q ss_pred CCCc-eeeecccCCccEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhCcCCCCCCceEEEEEecCce
Q 030963 33 FPED-IWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWANL 97 (168)
Q Consensus 33 ~~~D-lWfHv~~~pGaHViLr~~~g~~~~~ip~~~l~~AA~Laa~~Sk~~~~~~~V~V~yt~~knv 97 (168)
-|++ ++.--..-|+|-|+|+..+|. +.+. .+ .+-.-..+.|..|-+.++|+|+-.++..+
T Consensus 131 ~P~~~~f~~~~~~~sASV~l~~~~g~---~l~~-qv-~~I~~LVa~SV~~L~~enVtVv~~~~~~~ 191 (193)
T TIGR02544 131 LPENDNNGRPKKPSSASVFIKYRPGL---NLDA-LI-PKIKRLVANSIPGLDYDNVSVVLVPAEER 191 (193)
T ss_pred CCCCCcccccCCCCcEEEEEEeCCCC---CcHH-HH-HHHHHHHHHhcCCCCccceEEEEeccccc
Confidence 3443 444444567899999998875 3444 44 44444445777777889999998888653
No 8
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=29.93 E-value=1.7e+02 Score=26.46 Aligned_cols=78 Identities=10% Similarity=0.122 Sum_probs=46.6
Q ss_pred eeecccCCccEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhCcCCCCCCceEEEEEecCceecCCCC-------CcceEEE
Q 030963 38 WFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASM-------DVGQVGF 110 (168)
Q Consensus 38 WfHv~~~pGaHViLr~~~g~~~~~ip~~~l~~AA~Laa~~Sk~~~~~~~V~V~yt~~knv~K~~~~-------~~G~V~~ 110 (168)
.++..+=|-+|+|||...+ .+...+.+.+|+..-...- -...+-||. .-.|=.|...- -..|+.
T Consensus 219 iv~T~GN~~~HvILRGg~~---PNY~~~~v~~a~~~l~~~~----l~~~imVDc-SH~NS~K~~~~Q~~V~~~v~~qi~- 289 (348)
T PRK12756 219 IYQTSGNPYGHIIMRGGKK---PNYHAEDIAAACDTLREFD----LPEHLVVDF-SHGNCQKQHRRQLDVAEDICQQIR- 289 (348)
T ss_pred EEEcCCCCCeEEEeeCCCC---CCCCHHHHHHHHHHHHHCC----CCCcEEEEC-CCcccCCCHHHHHHHHHHHHHHHH-
Confidence 4677888899999996533 3778888888777654322 235566553 33354444331 123333
Q ss_pred cCceEEEEEeeecC
Q 030963 111 HNPKMVRTVKVEKR 124 (168)
Q Consensus 111 ~~~k~v~~~~v~~~ 124 (168)
..+..|.-|+++.-
T Consensus 290 ~g~~~I~GvMiES~ 303 (348)
T PRK12756 290 NGSTAIAGIMAESF 303 (348)
T ss_pred cCCCeEEEEEEeec
Confidence 34455777777654
No 9
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=29.67 E-value=1.7e+02 Score=26.50 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=47.0
Q ss_pred eeeecccCCccEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhCcCCCCCCceEEEEEecCceecCCCC-------CcceEE
Q 030963 37 IWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASM-------DVGQVG 109 (168)
Q Consensus 37 lWfHv~~~pGaHViLr~~~g~~~~~ip~~~l~~AA~Laa~~Sk~~~~~~~V~V~yt~~knv~K~~~~-------~~G~V~ 109 (168)
-.+|..+=|-.|||||...+ .+...+.+..|...-...- -...+-||. .-.|=.|...- -..|+.
T Consensus 219 aiv~T~GN~~~HvILRGg~~---PNY~~~~v~~a~~~l~~~~----l~~~vmVDc-SH~NS~K~~~~Q~~V~~~v~~q~~ 290 (356)
T PRK12822 219 STLLSDGNPHGHIILRGGRE---PNYGLSDVTKASKLLHDEG----LNHRLIIDC-SHGNSQKVAKNQISVARELCDQLK 290 (356)
T ss_pred EEEEcCCCCCceEEEeCCCC---CCCCHHHHHHHHHHHHHCC----CCCcEEEEC-CCccCCCCHHHHHHHHHHHHHHHH
Confidence 34777788889999996433 3677888888877665432 235566653 33455554331 123333
Q ss_pred EcCceEEEEEeeecC
Q 030963 110 FHNPKMVRTVKVEKR 124 (168)
Q Consensus 110 ~~~~k~v~~~~v~~~ 124 (168)
.....|.-|+++.-
T Consensus 291 -~g~~~I~GvMiES~ 304 (356)
T PRK12822 291 -EGEGAIAGVMVESF 304 (356)
T ss_pred -CCCCeEEEEEEeec
Confidence 34445777777654
No 10
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed
Probab=28.53 E-value=1.6e+02 Score=24.24 Aligned_cols=64 Identities=13% Similarity=0.110 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHhCcCCCCCCceEEEEEecC-ceecCCCCCcceEEEcCce-EEEEEeeecCc
Q 030963 62 ISEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWA-NLKKTASMDVGQVGFHNPK-MVRTVKVEKRI 125 (168)
Q Consensus 62 ip~~~l~~AA~Laa~~Sk~~~~~~~V~V~yt~~k-nv~K~~~~~~G~V~~~~~k-~v~~~~v~~~~ 125 (168)
++.+.|.+|..+++.+++.++....|++..+.+. +.+|+...-.|.|.+-+.- .-.+|.|..++
T Consensus 2 ~~~~~~~eai~~~k~~~~~~kf~esvel~v~Lk~id~~k~~~~irg~i~LP~~~~k~~~V~vf~~~ 67 (215)
T PRK04203 2 MDREKIEEAVKEALEEAPKRNFTQSVDLIVNLKDIDLKKPENRIDEEVVLPHGRGKEVKIAVIAKG 67 (215)
T ss_pred CcHHHHHHHHHHHHHhcccCCCCceEEEEEEecCCCCCccCceeeEEEECCCCCCCCcEEEEEcCh
Confidence 4678899999999987655677889999998743 5555555557777654432 22245566553
No 11
>COG3553 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.55 E-value=2.6e+02 Score=20.72 Aligned_cols=64 Identities=19% Similarity=0.157 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHhCcCCCCCCceEEEEEecCceecCCCCCcceEEEcCceEEEEEeeecCcHHHHHHHhc
Q 030963 63 SEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKMVRTVKVEKRINEIVNRLNK 134 (168)
Q Consensus 63 p~~~l~~AA~Laa~~Sk~~~~~~~V~V~yt~~knv~K~~~~~~G~V~~~~~k~v~~~~v~~~~~~~v~rL~k 134 (168)
++..-..--+||+.++- +++|-|+|-.--=- -...|.++.........+.|.+++..-|-+|+.
T Consensus 10 TehaarYl~qLckHwah------Kf~ve~~p~~g~id--l~~~~~~~l~a~a~~L~i~v~~d~e~~lA~le~ 73 (96)
T COG3553 10 TEHAARYLQQLCKHWAH------KFPVEFDPTHGTID--LPVLGTLTLDADAQTLTIVVEADEEQNLARLED 73 (96)
T ss_pred hHHHHHHHHHHHHHhhc------cCCceECCCcceee--cCccceEEeecCCCEEEEEeccchhhhHHHHHH
Confidence 46667777889998884 48999988653211 123667777666666678888886667777754
No 12
>PF11385 DUF3189: Protein of unknown function (DUF3189); InterPro: IPR021525 This family of proteins with unknown function appears to be restricted to Firmicutes
Probab=27.05 E-value=21 Score=28.14 Aligned_cols=17 Identities=47% Similarity=0.683 Sum_probs=13.2
Q ss_pred cCCCeEEEEeCChHHHH
Q 030963 10 EAGDYTIFMGLDKYENE 26 (168)
Q Consensus 10 ~s~g~~I~vGRn~~eNe 26 (168)
.+.|..+|+|+|+..|+
T Consensus 47 ~d~G~l~y~G~De~gn~ 63 (148)
T PF11385_consen 47 EDIGRLIYMGTDEYGNE 63 (148)
T ss_pred CcCceEEEEEEcCCCCE
Confidence 45688889998887775
No 13
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=24.86 E-value=1.4e+02 Score=22.48 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=27.1
Q ss_pred cCCccEEEEEeC-CCCCC---CCCCHHHHHHHHHHHHHhC
Q 030963 43 KMSSAHVYLRLH-KGQTI---DDISEGVLEDCAQLVKANS 78 (168)
Q Consensus 43 ~~pGaHViLr~~-~g~~~---~~ip~~~l~~AA~Laa~~S 78 (168)
.+||+-...+-. .|+.. .++|++.++.+|.+|+.|-
T Consensus 8 ~lpGv~AAg~Fs~~G~l~e~~G~l~~~~a~m~A~mc~An~ 47 (108)
T PF09941_consen 8 KLPGVVAAGEFSDDGKLVEYKGELDEEMAEMLAKMCAANT 47 (108)
T ss_pred cCCCeEEEEEECCCCeEEeeecCCCHHHHHHHHHHHHHHH
Confidence 578887766654 44321 2799999999999999987
No 14
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=24.80 E-value=56 Score=25.90 Aligned_cols=33 Identities=30% Similarity=0.522 Sum_probs=23.0
Q ss_pred HHHHHHhcCCCceeeecccCC-ccEEEEEeCCCC
Q 030963 25 NEELIKYGFPEDIWFHVDKMS-SAHVYLRLHKGQ 57 (168)
Q Consensus 25 Ne~L~k~a~~~DlWfHv~~~p-GaHViLr~~~g~ 57 (168)
-++|.|+..++|.|.++++.- --.-||+.+||.
T Consensus 72 ~~El~KH~~~dDcW~~i~G~VYnVt~Yl~fHPgG 105 (145)
T KOG0536|consen 72 AEELKKHNKKDDCWIAIRGKVYNVTAYLDFHPGG 105 (145)
T ss_pred HHHHHhhCCccceEEEEcCEEEecccccccCCCC
Confidence 466789999999999987531 112277777764
No 15
>PHA03034 hypothetical protein; Provisional
Probab=24.57 E-value=65 Score=25.05 Aligned_cols=20 Identities=25% Similarity=0.492 Sum_probs=15.7
Q ss_pred CeEEEEecccCCCeEEEEeCChHH
Q 030963 1 MVFYFKARPEAGDYTIFMGLDKYE 24 (168)
Q Consensus 1 mv~~F~s~~~s~g~~I~vGRn~~e 24 (168)
|+|||.. +|..|+-|--+++
T Consensus 1 mi~yf~~----d~~~iif~~~~q~ 20 (145)
T PHA03034 1 MIWYFII----DGKNIIFGNEAQL 20 (145)
T ss_pred CEEEEEe----CCceEEECHHHHH
Confidence 9999997 6888888865543
No 16
>PF09981 DUF2218: Uncharacterized protein conserved in bacteria (DUF2218); InterPro: IPR014543 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2JPI_A.
Probab=23.85 E-value=2.5e+02 Score=19.93 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCcCCCCCCceEEEEEecCceecCCCCCcceEEEcCceEEEEEeeecCcHHHHHHHhc
Q 030963 67 LEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKMVRTVKVEKRINEIVNRLNK 134 (168)
Q Consensus 67 l~~AA~Laa~~Sk~~~~~~~V~V~yt~~knv~K~~~~~~G~V~~~~~k~v~~~~v~~~~~~~v~rL~k 134 (168)
-....+||++|+- +++|.|++-.-.=. .+.|.+.+.-......+.|...+.+.+.+|..
T Consensus 11 ~ryl~qLc~Hf~h------k~~v~~d~~~g~i~---f~~G~~~l~a~~~~L~l~vea~~~~~L~~~~~ 69 (89)
T PF09981_consen 11 SRYLKQLCKHFAH------KFEVEWDEDSGRIT---FPFGTCTLSAEPDALTLRVEAPDAEALARLED 69 (89)
T ss_dssp HHHHHHHHHHTTT------SSEEEE-SSEEEEE----SSS-EEEEEETTEEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHhcC------CCceEEcCCceEEE---eCCEEEEEEeCCCeEEEEEEeCCHHHHHHHHH
Confidence 4567899999983 48888877543222 23555555544444556787777888877754
No 17
>PF08111 Pea-VEAacid: Pea-VEAacid family; InterPro: IPR012593 This family consists of the PEA-VEAacid neuropeptides family. These neuropeptides are isolated from the abdominal perisympathetic organs of the American cockroach. These peptides are found together with Pea-YLS-amide and Pea-SKNacid, giving a unique neuropeptide pattern in abdominal perisympathetic organs. The functions of these neuropeptides are unknown [].; GO: 0005184 neuropeptide hormone activity, 0007218 neuropeptide signaling pathway, 0005576 extracellular region
Probab=23.46 E-value=29 Score=17.12 Aligned_cols=6 Identities=33% Similarity=0.595 Sum_probs=4.5
Q ss_pred CCccEE
Q 030963 44 MSSAHV 49 (168)
Q Consensus 44 ~pGaHV 49 (168)
.||+||
T Consensus 4 tpgshv 9 (15)
T PF08111_consen 4 TPGSHV 9 (15)
T ss_pred cCccch
Confidence 578886
No 18
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=23.32 E-value=2.4e+02 Score=26.62 Aligned_cols=63 Identities=22% Similarity=0.358 Sum_probs=45.4
Q ss_pred cCCC-ceeeecccCCccEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhCcCCCCCCceEEEEEecCcee
Q 030963 32 GFPE-DIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWANLK 98 (168)
Q Consensus 32 a~~~-DlWfHv~~~pGaHViLr~~~g~~~~~ip~~~l~~AA~Laa~~Sk~~~~~~~V~V~yt~~knv~ 98 (168)
+-|+ ++|..-..-|+|.|+|+..+|. .++++.+.--..|++ .|..|-+..+|.|+=+...-|.
T Consensus 158 ~lP~~s~F~~~~~~~tASV~l~l~~g~---~L~~~qV~aI~~LVA-~sVpgL~~enVtVvD~~G~lLs 221 (542)
T PRK06007 158 ALPKESVFVREQQPPSASVVLTLKPGR---ALDPEQVKAIVHLVA-SAVPGLKPENVTIVDQNGRLLS 221 (542)
T ss_pred ECCCCccccccCCCCcEEEEEeccCCC---CCCHHHHHHHHHHHH-hccCCCCccceEEEcCCCCCcc
Confidence 3444 4555556678999999998886 688998888888887 4556667778887755555554
No 19
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=23.06 E-value=1e+02 Score=26.93 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=14.2
Q ss_pred ccCCccEEEEEeCCCCCCCCCCHHHHH
Q 030963 42 DKMSSAHVYLRLHKGQTIDDISEGVLE 68 (168)
Q Consensus 42 ~~~pGaHViLr~~~g~~~~~ip~~~l~ 68 (168)
.++|.+++++--.+ ++++..+.
T Consensus 157 ~~Lp~~~~vmsEs~-----e~~~~il~ 178 (321)
T PF07946_consen 157 PKLPESLVVMSESN-----EVTDFILT 178 (321)
T ss_pred cCCCcceEEEEccH-----hHHHHHhC
Confidence 47888888876432 56665555
No 20
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=22.79 E-value=1.7e+02 Score=24.48 Aligned_cols=85 Identities=8% Similarity=-0.011 Sum_probs=44.3
Q ss_pred HHHHHHHHhCcCCCCCCceEEEEEecCcee-----cCCCCCcceEE--EcCceEEEEEeeecCcHHHHHHHhcccccccc
Q 030963 69 DCAQLVKANSIQGNKVNNIDVVYTPWANLK-----KTASMDVGQVG--FHNPKMVRTVKVEKRINEIVNRLNKTKVERKP 141 (168)
Q Consensus 69 ~AA~Laa~~Sk~~~~~~~V~V~yt~~knv~-----K~~~~~~G~V~--~~~~k~v~~~~v~~~~~~~v~rL~kt~~e~~~ 141 (168)
..+.||..||........-++-|.+...+- ....+++|+|+ +....-..-+. |...+....+
T Consensus 158 ~F~~lA~~~S~~~sa~~GGdlG~~~~~~l~~~~~~~l~~L~~G~vS~Pi~s~~G~hIlk-----------l~~~~~~~~~ 226 (256)
T TIGR02933 158 AFAEQAMRHSHCPTAMEGGLLGWVSRGLLYPQLDAALFQLAEGELSPPIESEIGWHLLL-----------CEAIRPARPL 226 (256)
T ss_pred cHHHHHHHhCCCCccccCCccCCcCCCccChHHHHHHHcCCCCCcCCceeeCCeEEEEE-----------EeeecCCCCC
Confidence 357788899953111111223344444432 24457889884 33333332222 2333344556
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhh
Q 030963 142 DLKAEREAANAAERAERKLQLRD 164 (168)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~ 164 (168)
.|++-+++-....+.++..+...
T Consensus 227 ~~eevk~~I~~~L~~~k~~~~~~ 249 (256)
T TIGR02933 227 TLEEALPRARDRLQLRQQKAYQR 249 (256)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 78887777766666665555443
No 21
>COG0722 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=22.20 E-value=1.4e+02 Score=27.02 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=41.6
Q ss_pred eecccCCccEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhCcCCCCCCceEEEEEecCceecCCCC-------CcceEEEc
Q 030963 39 FHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASM-------DVGQVGFH 111 (168)
Q Consensus 39 fHv~~~pGaHViLr~~~g~~~~~ip~~~l~~AA~Laa~~Sk~~~~~~~V~V~yt~~knv~K~~~~-------~~G~V~~~ 111 (168)
++..+=|-+|||||....+ .+...+.+.+|++.-.. .| -...+-||+. -.|-.|..-- -..|+ -.
T Consensus 221 v~T~GNp~~HvILRGG~~~--PNYda~~v~~~~~~l~~---~g-l~~~lmID~S-H~NS~K~~~~Q~~V~~~v~~Qi-~~ 292 (351)
T COG0722 221 VETSGNPDGHVILRGGKKG--PNYDAASVAAACEQLEK---AG-LPPRLMIDCS-HANSGKDYRRQPKVARDVCQQI-AA 292 (351)
T ss_pred EEccCCCCceEEecCCCCC--CCCCHHHHHHHHHHHHH---cC-CCCeEEEecc-CCccccChhhhHHHHHHHHHHH-hc
Confidence 5567778899999975322 26677766666554432 21 2345555533 3333332221 11122 23
Q ss_pred CceEEEEEeeecC
Q 030963 112 NPKMVRTVKVEKR 124 (168)
Q Consensus 112 ~~k~v~~~~v~~~ 124 (168)
.++.|.-|+++.-
T Consensus 293 G~~~I~GvMiES~ 305 (351)
T COG0722 293 GERAIRGVMIESH 305 (351)
T ss_pred CCceeEEEEehhh
Confidence 3467777777665
No 22
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=21.07 E-value=1.6e+02 Score=23.95 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=33.5
Q ss_pred ecccCCccEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhCcCCCCCCceEEEEEe
Q 030963 40 HVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYTP 93 (168)
Q Consensus 40 Hv~~~pGaHViLr~~~g~~~~~ip~~~l~~AA~Laa~~Sk~~~~~~~V~V~yt~ 93 (168)
+...++++++.|- |++++-|+....+|..+-++ ....+.|..|.
T Consensus 22 ~~~~l~~~ei~L~--------Did~~RL~~~~~~~~~~~~~--~~~~~~v~~tt 65 (183)
T PF02056_consen 22 RTEELSGSEIVLM--------DIDEERLEIVERLARRMVEE--AGADLKVEATT 65 (183)
T ss_dssp CTTTSTEEEEEEE---------SCHHHHHHHHHHHHHHHHH--CTTSSEEEEES
T ss_pred cCccCCCcEEEEE--------cCCHHHHHHHHHHHHHHHHh--cCCCeEEEEeC
Confidence 4568999999998 78999999999999999854 23456666543
No 23
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=20.55 E-value=3.4e+02 Score=19.60 Aligned_cols=58 Identities=10% Similarity=0.051 Sum_probs=39.5
Q ss_pred CCceeeecccCCccEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhCcC-CCCCCceEEEEEecC
Q 030963 34 PEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQ-GNKVNNIDVVYTPWA 95 (168)
Q Consensus 34 ~~DlWfHv~~~pGaHViLr~~~g~~~~~ip~~~l~~AA~Laa~~Sk~-~~~~~~V~V~yt~~k 95 (168)
+.+++|...+-|.+.|=|+.-+|- -++.-.+.++.|+..-+.. |...++|-|.|+...
T Consensus 46 ~~~m~f~g~~~p~a~v~i~~~g~~----~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~f~~~~ 104 (116)
T PTZ00397 46 QKHMRFGGSHDGCCFVRVTSIGGI----SRSNNSSIAAAITKILASHLKVKSERVYIEFKDCS 104 (116)
T ss_pred CceEEECCCCCceEEEEEEEecCC----CHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEECC
Confidence 456788877778888777765431 2466777778888777743 456777888877643
No 24
>TIGR02435 CobG precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.
Probab=20.18 E-value=2.6e+02 Score=24.86 Aligned_cols=49 Identities=27% Similarity=0.295 Sum_probs=32.7
Q ss_pred ecccCCccEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhCcCCCCCCceEEEEEecCceec
Q 030963 40 HVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKK 99 (168)
Q Consensus 40 Hv~~~pGaHViLr~~~g~~~~~ip~~~l~~AA~Laa~~Sk~~~~~~~V~V~yt~~knv~K 99 (168)
|.+.-.|-.|-++.+.| .++.+.+...|.+|..|.. -.|..|+|.||-=
T Consensus 250 ~~q~~~~~~v~~~~p~G----~i~~~~l~~la~ia~~~g~-------~~irlT~~Q~l~i 298 (390)
T TIGR02435 250 HPQGDAGVTLGAGLALG----QLTAAQLRGLAQLAQALGD-------GDLRLTPWRALLV 298 (390)
T ss_pred eecCCCCeEEEEecCcc----ccCHHHHHHHHHHHHHhCC-------CeEEEcCCcceEE
Confidence 33344454555666666 6999999999999998862 2355566666543
No 25
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=20.02 E-value=44 Score=29.67 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=17.0
Q ss_pred HHHHhcCCCceeeecccCCccEEE
Q 030963 27 ELIKYGFPEDIWFHVDKMSSAHVY 50 (168)
Q Consensus 27 ~L~k~a~~~DlWfHv~~~pGaHVi 50 (168)
.|.+.+...++|||||..=|..++
T Consensus 215 ~i~~i~~~~~~wlHVDaA~gg~~~ 238 (373)
T PF00282_consen 215 EIADICEKYNIWLHVDAAYGGSAL 238 (373)
T ss_dssp HHHHHHHHCT-EEEEEETTGGGGG
T ss_pred HHhhhccccceeeeeccccccccc
Confidence 455777889999999977665443
Done!