Query 030963
Match_columns 168
No_of_seqs 187 out of 935
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 11:11:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030963.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030963hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2akja1 d.58.36.1 (A:346-430) 51.2 12 0.00089 23.7 4.7 36 39-78 11-47 (85)
2 d2pv2a1 d.26.1.1 (A:172-274) P 42.3 29 0.0021 21.9 5.7 38 72-109 43-85 (103)
3 d1xsza2 d.129.9.1 (A:198-354) 39.8 7.9 0.00057 27.6 2.4 26 47-79 95-120 (157)
4 d1zj8a1 d.58.36.1 (A:327-406) 35.2 20 0.0014 22.0 3.7 28 47-78 16-43 (80)
5 d1n8fa_ c.1.10.4 (A:) 3-deoxy- 30.8 72 0.0053 25.4 7.3 47 38-91 213-259 (343)
6 d1js3a_ c.67.1.6 (A:) DOPA dec 25.4 9.4 0.00069 31.4 0.8 21 27-47 256-276 (476)
7 d1gyxa_ d.80.1.1 (A:) 4-oxaloc 24.3 75 0.0054 19.5 5.2 44 47-94 1-46 (76)
8 d1of8a_ c.1.10.4 (A:) 3-deoxy- 20.4 95 0.0069 24.7 6.1 76 39-124 214-296 (346)
9 d1dv8a_ d.169.1.1 (A:) H1 subu 20.2 41 0.003 21.1 3.2 39 12-50 32-70 (128)
10 d1mwwa_ d.80.1.4 (A:) Hypothet 19.1 44 0.0032 21.7 3.2 34 18-51 68-111 (120)
No 1
>d2akja1 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=51.15 E-value=12 Score=23.66 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=29.2
Q ss_pred eecccCCcc-EEEEEeCCCCCCCCCCHHHHHHHHHHHHHhC
Q 030963 39 FHVDKMSSA-HVYLRLHKGQTIDDISEGVLEDCAQLVKANS 78 (168)
Q Consensus 39 fHv~~~pGa-HViLr~~~g~~~~~ip~~~l~~AA~Laa~~S 78 (168)
+|.+.-+|- .|-++.+.| .++.+.+...|.||..|+
T Consensus 11 v~~Qk~~g~~~vri~~p~G----~lt~~ql~~la~ia~~yg 47 (85)
T d2akja1 11 VHPQKQQGLSFVGLHIPVG----RLQADEMEELARIADVYG 47 (85)
T ss_dssp EEECSSTTEEEEEECCGGG----EECHHHHHHHHHHHHHHS
T ss_pred EeecCCCCeEEEEEEcCCc----EeCHHHHHHHHHHHHHHC
Confidence 566666774 467777766 699999999999999998
No 2
>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}
Probab=42.29 E-value=29 Score=21.91 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=22.3
Q ss_pred HHHHHhCcCCCCCCceEEEEEecCceec-----CCCCCcceEE
Q 030963 72 QLVKANSIQGNKVNNIDVVYTPWANLKK-----TASMDVGQVG 109 (168)
Q Consensus 72 ~Laa~~Sk~~~~~~~V~V~yt~~knv~K-----~~~~~~G~V~ 109 (168)
.||..||........-.+-|....++-. ...+++|+|+
T Consensus 43 ~la~~~S~~~~~~~gG~lg~~~~~~l~~~~~~~i~~l~~G~is 85 (103)
T d2pv2a1 43 KLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIV 85 (103)
T ss_dssp HHHHHHCCSTTGGGTTEEEEEEGGGSBHHHHHHHHTCCTTCEE
T ss_pred HHhcccccccccccccccccccccccchhhhhhhhhcCCCCCC
Confidence 4678888432222333566777777643 3347888874
No 3
>d1xsza2 d.129.9.1 (A:198-354) RalF, C-terminal domain {Legionella pneumophila [TaxId: 446]}
Probab=39.79 E-value=7.9 Score=27.57 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhCc
Q 030963 47 AHVYLRLHKGQTIDDISEGVLEDCAQLVKANSI 79 (168)
Q Consensus 47 aHViLr~~~g~~~~~ip~~~l~~AA~Laa~~Sk 79 (168)
|.|||.. |+ +++.|..||++||.||.
T Consensus 95 skiiIQP--g~-----seqSl~LAaqiaA~Fet 120 (157)
T d1xsza2 95 PRVIIQP--GQ-----TKESIDLAAKAAADFSS 120 (157)
T ss_dssp CEEEEEE--CS-----STTHHHHHHHHHHTSSS
T ss_pred CeEEecC--CC-----chhhHHHHHHHhccccc
Confidence 4677764 42 78999999999999994
No 4
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=35.21 E-value=20 Score=22.03 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=23.7
Q ss_pred cEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhC
Q 030963 47 AHVYLRLHKGQTIDDISEGVLEDCAQLVKANS 78 (168)
Q Consensus 47 aHViLr~~~g~~~~~ip~~~l~~AA~Laa~~S 78 (168)
-.|-++.+.| .++.+.+..-|.+|..|+
T Consensus 16 ~~vri~~p~G----~it~~ql~~la~ia~~yg 43 (80)
T d1zj8a1 16 NAVGVAPIAG----RVSGTILTAVADLMARAG 43 (80)
T ss_dssp EEEEEBCBTT----EEEHHHHHHHHHHHHHHT
T ss_pred EEEEEeccCc----EECHHHHHHHHHHHHHhC
Confidence 4677777766 699999999999999998
No 5
>d1n8fa_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Escherichia coli, phenylalanine-regulated isozyme [TaxId: 562]}
Probab=30.78 E-value=72 Score=25.41 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=33.2
Q ss_pred eeecccCCccEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhCcCCCCCCceEEEE
Q 030963 38 WFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVY 91 (168)
Q Consensus 38 WfHv~~~pGaHViLr~~~g~~~~~ip~~~l~~AA~Laa~~Sk~~~~~~~V~V~y 91 (168)
.++..+=|-+|+|||...+ .+...+.+.+|..+-.... -..++-||.
T Consensus 213 iv~T~GN~~~HiILRGG~~---PNY~~~~V~~a~~~L~~~~----l~~~imVDc 259 (343)
T d1n8fa_ 213 IVNTSGNGDCHIILRGGKE---PNYSAKHVAEVKEGLNKAG----LPAQVMIDF 259 (343)
T ss_dssp EEEECCCSCEEEEECCSSS---CCCSHHHHHHHHHHHHHTT----CCCCEEEEC
T ss_pred eeeccCCCceeEEEEcCCC---CCCCHHHHHHHHHHHHHCC----CCHHHhhhc
Confidence 3788888999999997533 3788899988887776433 234565553
No 6
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=25.36 E-value=9.4 Score=31.37 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=16.0
Q ss_pred HHHHhcCCCceeeecccCCcc
Q 030963 27 ELIKYGFPEDIWFHVDKMSSA 47 (168)
Q Consensus 27 ~L~k~a~~~DlWfHv~~~pGa 47 (168)
.|...++..++|||+|..-|.
T Consensus 256 ~I~~i~~~~~~wlHVDAA~Gg 276 (476)
T d1js3a_ 256 EVGPICHEEDIWLHVDAAYAG 276 (476)
T ss_dssp HHHHHHHHTTCEEEEECTTGG
T ss_pred HHHHHHHhcCcEEEEecccch
Confidence 345778888999999976544
No 7
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE {Escherichia coli [TaxId: 562]}
Probab=24.29 E-value=75 Score=19.50 Aligned_cols=44 Identities=11% Similarity=0.162 Sum_probs=30.9
Q ss_pred cEEEEEeCCCCCCCCCCHH-HHHHHHHHHHHhCcC-CCCCCceEEEEEec
Q 030963 47 AHVYLRLHKGQTIDDISEG-VLEDCAQLVKANSIQ-GNKVNNIDVVYTPW 94 (168)
Q Consensus 47 aHViLr~~~g~~~~~ip~~-~l~~AA~Laa~~Sk~-~~~~~~V~V~yt~~ 94 (168)
|||-|+..+| .++++ --..|..++...+.. |+....|.|.+.+.
T Consensus 1 P~I~Ik~~~g----~lT~EQK~~L~~~iT~a~~~~lg~~~e~V~V~i~Ev 46 (76)
T d1gyxa_ 1 PHIDIKCFPR----ELDEQQKAALAADITDVIIRHLNSKDSSISIALQQI 46 (76)
T ss_dssp CEEEEEESCC----CCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEC
T ss_pred CeEEEEeCCC----CCCHHHHHHHHHHHHHHHHHHhCcCCCeEEEEEEEC
Confidence 6999999777 46644 445566677766643 56788899988764
No 8
>d1of8a_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Baker's yeast (Saccharomyces cerevisiae), tyrosine-regulated isozyme [TaxId: 4932]}
Probab=20.45 E-value=95 Score=24.69 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=42.6
Q ss_pred eecccCCccEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhCcCCCCCCceEEEEEecCceecCCCCC-------cceEEEc
Q 030963 39 FHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMD-------VGQVGFH 111 (168)
Q Consensus 39 fHv~~~pGaHViLr~~~g~~~~~ip~~~l~~AA~Laa~~Sk~~~~~~~V~V~yt~~knv~K~~~~~-------~G~V~~~ 111 (168)
++..+=|-+|||||.... ..+.+.+.+..|..+.. ++ ...+-|| |.-.|=.|...-. ..|+. .
T Consensus 214 v~T~GN~~~HiILRGG~~--gpNyd~~~v~~a~~~l~----~~--~~~imID-cSHgNS~Kd~~~Q~~V~~~v~~Qi~-~ 283 (346)
T d1of8a_ 214 TTTKGNEHCFVILRGGKK--GTNYDAKSVAEAKAQLP----AG--SNGLMID-YSHGNSNKDFRNQPKVNDVVCEQIA-N 283 (346)
T ss_dssp EEECCCSCEEEEECCCTT--CCCCSHHHHHHHHHHCC----TT--CCCEEEE-SSGGGGTSCGGGHHHHHHHHHHHHH-T
T ss_pred EEeCCCCcceEEEEccCC--CCCcCHHHHHHHHHHhh----hc--CCceEEe-cccccccCCHHHHHHHHHHHHHHHH-c
Confidence 888889999999997532 13677888877766542 11 2456555 3333444433211 11211 2
Q ss_pred CceEEEEEeeecC
Q 030963 112 NPKMVRTVKVEKR 124 (168)
Q Consensus 112 ~~k~v~~~~v~~~ 124 (168)
..+.|.-||++.-
T Consensus 284 G~~~I~GvMiES~ 296 (346)
T d1of8a_ 284 GENAITGVMIESN 296 (346)
T ss_dssp TCCSEEEEEEEBC
T ss_pred CCCcEEEEEEeec
Confidence 2345666777654
No 9
>d1dv8a_ d.169.1.1 (A:) H1 subunit of the asialoglycoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.15 E-value=41 Score=21.13 Aligned_cols=39 Identities=10% Similarity=0.108 Sum_probs=30.5
Q ss_pred CCeEEEEeCChHHHHHHHHhcCCCceeeecccCCccEEE
Q 030963 12 GDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVY 50 (168)
Q Consensus 12 ~g~~I~vGRn~~eNe~L~k~a~~~DlWfHv~~~pGaHVi 50 (168)
.|..|.+=.|..||+.|..+....++|+-+.+..|+...
T Consensus 32 ~g~~La~i~~~~e~~~i~~~~~~~~~WiG~~~~~~~~~W 70 (128)
T d1dv8a_ 32 EDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKW 70 (128)
T ss_dssp TTCEECCCCSHHHHHHHHHHHCSSCEEEEEECTTSSCEE
T ss_pred cCCEEeeecccchhhhhhccccceeeeeeccccCCceEE
Confidence 345566669999999998888889999988777766544
No 10
>d1mwwa_ d.80.1.4 (A:) Hypothetical protein HI1388.1 {Haemophilus influenzae [TaxId: 727]}
Probab=19.08 E-value=44 Score=21.69 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=25.2
Q ss_pred EeCChHHHHHHHH---------hc-CCCceeeecccCCccEEEE
Q 030963 18 MGLDKYENEELIK---------YG-FPEDIWFHVDKMSSAHVYL 51 (168)
Q Consensus 18 vGRn~~eNe~L~k---------~a-~~~DlWfHv~~~pGaHViL 51 (168)
-||+..++..|.+ .+ .++|++.++.+.|..|.=.
T Consensus 68 ~grs~eqK~~l~~~lt~~l~~~lgi~~~~v~I~i~e~~~~~W~~ 111 (120)
T d1mwwa_ 68 AGRMEGTKKRLIKMLFSELEYKLGIRAHDVEITIKEQPAHCWGF 111 (120)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECGGGEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEECCHHHeEE
Confidence 3899999999843 12 5678888888888776655
Done!