BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030965
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HVA|A Chain A, Solution Structure Of The Haem-Binding Protein P22hbp
Length = 192
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 45 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 99
T G M MT PV ++D K ++ F +P+++ + P P D SV+I+E
Sbjct: 71 TNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 130
Query: 100 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 159
F G+ + D +LR L+G +G A Y+PP P+ RRNE+
Sbjct: 131 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 187
Query: 160 AL 161
L
Sbjct: 188 WL 189
>pdb|4A1M|A Chain A, Nmr Structure Of Protoporphyrin-Ix Bound Murine P22hbp
Length = 195
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 45 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 99
T G M MT PV ++D K ++ F +P+++ + P P D SV+I+E
Sbjct: 74 TNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 133
Query: 100 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 159
F G+ + D +LR L+G +G A Y+PP P+ RRNE+
Sbjct: 134 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 190
Query: 160 AL 161
L
Sbjct: 191 WL 192
>pdb|2GOV|A Chain A, Solution Structure Of Murine P22hbp
Length = 195
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 45 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 99
T G M MT PV ++D K ++ F +P+++ + P P D SV+I+E
Sbjct: 74 TNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 133
Query: 100 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 159
F G+ + D +LR L+G +G A Y+PP P+ RRNE+
Sbjct: 134 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 190
Query: 160 AL 161
L
Sbjct: 191 WL 192
>pdb|4B0Y|A Chain A, Determination Of X-Ray Structure Of Human Soul By
Molecular Replacement
Length = 227
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 9 DFNGASRS-FNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQD 67
D++ A ++ F L Y+ GKN K ++MT PV + G E T +
Sbjct: 79 DWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITI--------- 129
Query: 68 KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALK 127
S +PS+ + P P + V I++ F GF + + + + L L L+
Sbjct: 130 ----SLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILR 185
Query: 128 GDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIAL 161
D +V + A YN P L R NE+ L
Sbjct: 186 EDG--KVFDEKVYYTAGYNSPVKL-LNRNNEVWL 216
>pdb|3R8J|A Chain A, Crystal Structure Of Human Soul Protein (Orthorhombic
Form)
pdb|3R8J|B Chain B, Crystal Structure Of Human Soul Protein (Orthorhombic
Form)
pdb|3R8K|A Chain A, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|B Chain B, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|C Chain C, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|D Chain D, Crystal Structure Of Human Soul Protein (Hexagonal Form)
Length = 212
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 9 DFNGASRS-FNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQD 67
D++ A ++ F L Y+ GKN K ++MT PV + G E T
Sbjct: 60 DWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTI----------- 108
Query: 68 KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALK 127
+S +PS+ + P P + V I++ F GF + + + + L L L+
Sbjct: 109 --TISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILR 166
Query: 128 GDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIAL 161
D +V + A YN P L R NE+ L
Sbjct: 167 EDG--KVFDEKVYYTAGYNSPVKL-LNRNNEVWL 197
>pdb|1XKS|A Chain A, The Crystal Structure Of The N-Terminal Domain Of Nup133
Reveals A Beta-Propeller Fold Common To Several
Nucleoporins
Length = 450
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 129 DRQFRVKEGASVEVAQYNPPF 149
D ++ + +VEV QYNPPF
Sbjct: 313 DNGCQMSDAVTVEVTQYNPPF 333
>pdb|4AYZ|A Chain A, X-Ray Structure Of Human Soul
Length = 208
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 9 DFNGASRS-FNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQD 67
D++ A ++ F L Y+ GKN K ++ T PV + G E T
Sbjct: 60 DWDSAIQTGFTKLNSYIQGKNEKEXKIKXTAPVTSYVEPGSGPFSESTI----------- 108
Query: 68 KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALK 127
+S +PS+ + P P + V I++ F GF + + + + L L L+
Sbjct: 109 --TISLYIPSEQQFDPPRPLESDVFIEDRAEXTVFVRSFDGFSSAQKNQEQLLTLASILR 166
Query: 128 GDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIAL 161
D +V + A YN P L R NE+ L
Sbjct: 167 EDG--KVFDEKVYYTAGYNSPVKL-LNRNNEVWL 197
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 2 MPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVI 41
+PGR F F R ++ Y G T T+EM PVI
Sbjct: 696 LPGRE-FIFANLDRIIRLVIRYFTGNRTASRTVEMMIPVI 734
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 2 MPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVI 41
+PGR F F R ++ Y G T T+EM PVI
Sbjct: 696 LPGRE-FIFANLDRIIRLVIRYFTGNRTASRTVEMMIPVI 734
>pdb|4AYZ|B Chain B, X-Ray Structure Of Human Soul
Length = 208
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 9 DFNGASRS-FNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQD 67
D++ A ++ F L Y+ GKN K ++ T PV + G E +T I
Sbjct: 60 DWDSAIQTGFTKLNSYIQGKNEKEXKIKXTAPVTSYVEPGSG-PFESSTITI-------- 110
Query: 68 KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALK 127
S +PS+ + P P + V I++ F GF + + + + L L L+
Sbjct: 111 ----SLYIPSEQQFDPPRPLESDVFIEDRAEXTVFVRSFDGFSSAQKNQEQLLTLASILR 166
Query: 128 GDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIAL 161
D +V + A YN P L R NE+ L
Sbjct: 167 EDG--KVFDEKVYYTAGYNSPVKL-LNRNNEVWL 197
>pdb|3S5O|A Chain A, Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate
Aldolase Bound To Pyruvate
Length = 307
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 136 EGASVEVAQYNPPFTLPFTRRNEI 159
EG V++A PP T PFT E+
Sbjct: 9 EGKKVDIAGIYPPVTTPFTATAEV 32
>pdb|3S5N|A Chain A, Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate
Aldolase
Length = 304
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 136 EGASVEVAQYNPPFTLPFTRRNEI 159
EG V++A PP T PFT E+
Sbjct: 6 EGKKVDIAGIYPPVTTPFTATAEV 29
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,664,413
Number of Sequences: 62578
Number of extensions: 165013
Number of successful extensions: 487
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 14
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)