Query 030965
Match_columns 168
No_of_seqs 114 out of 472
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 11:14:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8j_A Heme-binding protein 2; 100.0 2.3E-45 7.8E-50 295.2 16.4 143 7-165 58-201 (212)
2 4b0y_A Heme-binding protein 2; 100.0 3.3E-45 1.1E-49 296.9 16.9 145 6-166 76-221 (227)
3 2gov_A P22HBP, heme-binding pr 100.0 1.6E-45 5.6E-50 292.7 13.0 143 6-164 52-195 (195)
4 3e0h_A Uncharacterized protein 98.0 0.00034 1.2E-08 51.4 13.9 120 15-165 37-157 (158)
5 1jyh_A DNA gyrase inhibitory p 98.0 9.6E-05 3.3E-09 52.6 10.5 129 13-167 26-156 (157)
6 3b49_A LIN2189 protein; BIG 86 95.4 0.094 3.2E-06 40.4 9.0 95 67-164 102-211 (211)
7 3lur_A Putative bacterial tran 95.2 0.24 8.3E-06 36.1 10.2 73 89-165 85-158 (158)
8 1r8e_A Multidrug-efflux transp 94.7 0.2 6.8E-06 39.8 9.2 73 87-164 203-277 (278)
9 1d5y_A ROB transcription facto 93.8 0.32 1.1E-05 38.5 8.6 73 89-166 210-288 (292)
10 3gk6_A Integron cassette prote 90.1 4.4 0.00015 29.9 11.6 66 89-164 103-170 (170)
11 3e0h_A Uncharacterized protein 89.0 3.1 0.00011 29.6 8.8 70 90-165 8-79 (158)
12 3b49_A LIN2189 protein; BIG 86 83.3 6.6 0.00022 29.8 8.4 43 89-131 23-71 (211)
13 1jyh_A DNA gyrase inhibitory p 78.3 8.9 0.0003 26.0 7.1 70 90-164 2-72 (157)
14 1r8e_A Multidrug-efflux transp 68.7 7.5 0.00026 30.4 5.2 73 88-165 121-196 (278)
15 2q3l_A Uncharacterized protein 50.7 27 0.00093 24.4 5.0 42 90-131 10-51 (126)
16 2ook_A Hypothetical protein; s 47.6 46 0.0016 23.2 5.8 43 90-132 10-54 (127)
17 1d5y_A ROB transcription facto 41.7 57 0.002 25.1 6.1 58 89-149 124-185 (292)
18 3dct_B Nuclear receptor coacti 27.2 24 0.00081 17.3 0.9 14 18-31 6-19 (21)
19 2jkg_A Profilin; proline-rich 24.0 1.8E+02 0.0062 22.0 5.9 44 89-132 127-172 (179)
20 2v8f_A Profilin-2, profilin II 22.6 2.1E+02 0.0072 20.3 6.1 39 91-130 101-139 (140)
21 1acf_A Profilin I; protein bin 22.2 2E+02 0.0068 19.8 6.2 40 90-130 85-124 (125)
22 1qys_A TOP7; alpha-beta, novel 20.5 24 0.00081 23.6 0.2 26 13-38 29-54 (106)
No 1
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E
Probab=100.00 E-value=2.3e-45 Score=295.22 Aligned_cols=143 Identities=28% Similarity=0.460 Sum_probs=129.7
Q ss_pred CCCcchh-hHHHHHHHHhhccCCCCCcccCCCccEEEEeecCCCccccccccceeccccCCCeEEEEEEeecCCCCCCCC
Q 030965 7 GFDFNGA-SRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPL 85 (168)
Q Consensus 7 g~~~~~~-~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~~~mt~pv~~~~~~~~~~~~msF~lP~~~~~~~P~ 85 (168)
|.+++.+ ..||++|++||+|+|.++.+|+||+||++++.++++ |. |.+.|+|+|+||++||++||+
T Consensus 58 ~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~p~~~-------~~------~~~~~tvsF~lP~~~q~~pP~ 124 (212)
T 3r8j_A 58 SMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSG-------PF------SESTITISLYIPSEQQFDPPR 124 (212)
T ss_dssp ESCHHHHHHHHHHHHHHHHTTCBTTCCCCCCBSCEEEEEECTTS-------TT------SCEEEEEEEECCHHHHSSCCC
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCCCccccccCEEEEEecCCC-------cc------cCceEEEEEEcChHHccCCCC
Confidence 4556554 789999999999999999999999999999876554 22 467999999999999999999
Q ss_pred CCCCCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEeec
Q 030965 86 PKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER 165 (168)
Q Consensus 86 P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~~ 165 (168)
|+|++|+|+++|+++|||++|+|++++..+.+++++|+++|.++|+. ..++.|++|+||+||++ ++|||||||.++.
T Consensus 125 P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~--~~~~~y~~A~Yd~P~t~-~~RrNEVwi~~~~ 201 (212)
T 3r8j_A 125 PLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKV--FDEKVYYTAGYNSPVKL-LNRNNEVWLIQKN 201 (212)
T ss_dssp BSSTTEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHHHHHTTCC--BCSSCEEEEESSSSSCC-SSSCEEEEEEBCC
T ss_pred CCCCceEEEEeCCEEEEEEEeCCcCCHHHHHHHHHHHHHHHHhCCCc--cCCCcEEEEEeCCCCCc-CCceeEEEEEeCC
Confidence 99999999999999999999999999999999999999999999974 35667899999999997 9999999999875
No 2
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Probab=100.00 E-value=3.3e-45 Score=296.86 Aligned_cols=145 Identities=27% Similarity=0.449 Sum_probs=125.7
Q ss_pred CCCCcch-hhHHHHHHHHhhccCCCCCcccCCCccEEEEeecCCCccccccccceeccccCCCeEEEEEEeecCCCCCCC
Q 030965 6 TGFDFNG-ASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLP 84 (168)
Q Consensus 6 ~g~~~~~-~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~~~mt~pv~~~~~~~~~~~~msF~lP~~~~~~~P 84 (168)
+|.+++. ...||++|++||+|+|.++.+|+||+||++++.++++ |. |.+.|+|+|+||++||++||
T Consensus 76 ~~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~p~~~-------~~------~~~~~tvsF~lP~~~q~~pP 142 (227)
T 4b0y_A 76 ESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSG-------PF------SESTITISLYIPSEQQFDPP 142 (227)
T ss_dssp EESCHHHHHHHHHHHHHHHHHTCBTTCCCCCCBSCEEEEEECCC---------C------CCEEEEEEEECCGGGSSSCC
T ss_pred eCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccCEEEEEecCCC-------cc------cCceEEEEEEcChhhccCCC
Confidence 3455665 4789999999999999999999999999999876554 32 46799999999999999999
Q ss_pred CCCCCCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEee
Q 030965 85 LPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE 164 (168)
Q Consensus 85 ~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~ 164 (168)
+|+|++|+|+++|+++|||++|+|+++++++.+++++|+++|+++|+. ..++.|++|+||+||++ ++|||||||.++
T Consensus 143 ~P~D~~V~i~~~p~~~vaVr~FsG~~~~~~~~~~~~~L~~~L~~~g~~--~~~~~y~~A~Yd~P~t~-~~RrNEVwi~~~ 219 (227)
T 4b0y_A 143 RPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKV--FDEKVYYTAGYNSPVKL-LNRNNEVWLIQK 219 (227)
T ss_dssp CBSSSSEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHHHHHHTCC--BCSSCEEEEECC---CC-CSSCEEEEEEBC
T ss_pred CCCCCceEEEEeCCEEEEEEEecCcCCHHHHHHHHHHHHHHHHhCCCc--cCCCcEEEEEeCCCCCc-CCceeEEEEEEC
Confidence 999999999999999999999999999999999999999999999974 35667899999999997 999999999887
Q ss_pred cc
Q 030965 165 RK 166 (168)
Q Consensus 165 ~~ 166 (168)
.+
T Consensus 220 ~e 221 (227)
T 4b0y_A 220 NE 221 (227)
T ss_dssp --
T ss_pred CC
Confidence 43
No 3
>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A
Probab=100.00 E-value=1.6e-45 Score=292.67 Aligned_cols=143 Identities=28% Similarity=0.410 Sum_probs=127.6
Q ss_pred CCCCcchh-hHHHHHHHHhhccCCCCCcccCCCccEEEEeecCCCccccccccceeccccCCCeEEEEEEeecCCCCCCC
Q 030965 6 TGFDFNGA-SRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLP 84 (168)
Q Consensus 6 ~g~~~~~~-~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~~~mt~pv~~~~~~~~~~~~msF~lP~~~~~~~P 84 (168)
+|+.++.+ ..||++|++||+|+|..+.+|+||+||++++.++++ |. |.+.|+|||+||++||++||
T Consensus 52 ~~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~p~~~-------~~------~~~~~tvsF~lP~~~~~~pP 118 (195)
T 2gov_A 52 TDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNED-------GS------LQKKLKVWFRIPNQFQGSPP 118 (195)
T ss_dssp ESSCHHHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEEEECTT-------SC------EEEEEEEEECCCHHHHHSCC
T ss_pred cCCChhHHHHHHHHHHHHHhccCCCCCCCcccccCEEEEEcCCCC-------CC------cCceEEEEEEcchhcccCCC
Confidence 35555554 679999999999999999999999999998766443 22 46789999999999999999
Q ss_pred CCCCCCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEee
Q 030965 85 LPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE 164 (168)
Q Consensus 85 ~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~ 164 (168)
+|+|++|+|+++|+++|||++|+|++++..+.+++++|+++|+++|+. ...+.|++|+||+||++ ++|||||||..+
T Consensus 119 ~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~--~~~~~~~~a~Yn~P~~~-~~RrNEV~i~~~ 195 (195)
T 2gov_A 119 APSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPAT--YQGDVYYCAGYDPPMKP-YGRRNEVWLVKA 195 (195)
T ss_dssp CBCSSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHHHTTTSSCC--EEEEEEEEEESSCCSSS-SCCEEEEEEEEC
T ss_pred CCCCCceEEEEeCCeEEEEEEECCccCHHHHHHHHHHHHHHHHHCCCc--ccCCcEEEEEeCCCCCc-CCceeEEEEEeC
Confidence 999999999999999999999999999999999999999999999975 34567899999999998 999999999863
No 4
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=97.96 E-value=0.00034 Score=51.38 Aligned_cols=120 Identities=12% Similarity=0.099 Sum_probs=81.1
Q ss_pred HHHHHHHHhhccCCCCCcccCCCccEEEEeecCCCccccccccceeccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEE
Q 030965 15 RSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIK 94 (168)
Q Consensus 15 ~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~~~mt~pv~~~~~~~~~~~~msF~lP~~~~~~~P~P~d~~V~i~ 94 (168)
..|.+|++++..+|- ..+.|.+......+ ..+-.+.+++.++... +.+.+|.+.
T Consensus 37 ~~~~~l~~~~~~~~l-----~~~g~~~~iy~d~~---------------~~~~~~~~~~~v~~~~------~~~~~~~~~ 90 (158)
T 3e0h_A 37 AGYHDILQLLAGQGK-----SPSGPPFARYFGMS---------------AGTFEVEFGFPVEGGV------EGSGRVVTG 90 (158)
T ss_dssp HHHHHHHHHHHHTTC-----CCSSCCEEEEESCT---------------TSCEEEEEEEECCSCC------CCBTTBEEE
T ss_pred HHHHHHHHHHHHcCC-----CCCCCeEEEEecCC---------------CcceEEEEEEEeCCCC------CCCCceEEE
Confidence 568899999876543 23455444443211 0123466666665422 234689999
Q ss_pred eeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCC-CCCCCeeeEEEEeec
Q 030965 95 EVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFT-LPFTRRNEIALEVER 165 (168)
Q Consensus 95 ~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~-~~~~R~NEV~i~v~~ 165 (168)
.+|+.++|+.++.|...+ +.+...+|.+||.++|+. . . +..+-..++.|.. .+-..+.||||+|+.
T Consensus 91 ~ip~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~-~-~-~~~~E~Y~~~p~~~~~~~~~tei~ipv~~ 157 (158)
T 3e0h_A 91 LTPSGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFD-L-S-GEAYEIYLDNPAETAPDQLRTRVSLMLHE 157 (158)
T ss_dssp ECCCEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCC-E-E-EEEEEEECSCTTSSCGGGCEEEEEEEECC
T ss_pred EeCCEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCC-c-C-CCEEEEEeCCCCCCCHHHhEEEEEEEEcC
Confidence 999999999999997654 778888999999999964 2 2 3344444577774 345778999999973
No 5
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=97.96 E-value=9.6e-05 Score=52.60 Aligned_cols=129 Identities=14% Similarity=0.093 Sum_probs=82.6
Q ss_pred hhHHHHHHHHhhccCCCCCcccCCCccEEEEeecCCCccccccccceeccccCCCeEEEEEEeecCCCCCCCCCCCCCeE
Q 030965 13 ASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVR 92 (168)
Q Consensus 13 ~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~~~mt~pv~~~~~~~~~~~~msF~lP~~~~~~~P~P~d~~V~ 92 (168)
...+|.+|++++..+|-.. .+.+.... .. |...+ ...-.+.+++.+|.... +| |.++.+.
T Consensus 26 i~~~~~~l~~~~~~~~~~~------~~~~gi~~-~~--------~~~~~--~~~~~~~~~~~v~~~~~--~~-~~~~~~~ 85 (157)
T 1jyh_A 26 VKKGFEQLMMWVDSKNIVP------KEWVAVYY-DN--------PDETP--AEKLRCDTVVTVPGYFT--LP-ENSEGVI 85 (157)
T ss_dssp HHHHHHHHHHHHHHTTCCC------SEEEEEEC-SC--------TTTSC--GGGCEEEEEEEECTTCC--CC-SSCTTCE
T ss_pred HHHHHHHHHHHHHHcCCCC------CcEEEEEC-CC--------CCCCC--HHHheEEEEEEecCccc--cC-CCCCCeE
Confidence 4567999999997665322 14433221 11 11100 01346788888886543 22 4467899
Q ss_pred EEeeCCcEEEEEEecCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEEeC-CCCCCCCCCeeeEEEEeeccC
Q 030965 93 IKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQYN-PPFTLPFTRRNEIALEVERKE 167 (168)
Q Consensus 93 i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~A~Yd-~P~~~~~~R~NEV~i~v~~~~ 167 (168)
+..+|+.++||..|.|... .+.+....|. +||.++|+. ..+.+.+..|. .|.. +...+-||||+|+.++
T Consensus 86 ~~~ip~g~ya~~~~~G~~~--~~~~~~~~l~~~wl~~~g~~---~~~~~~~E~Y~~~~~~-~~~~~tei~ipi~~~~ 156 (157)
T 1jyh_A 86 LTEITGGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYE---MLPKPCFEVYLNNGAE-DGYWDIEMYVAVQPKH 156 (157)
T ss_dssp EEEECCEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEE---ECSSCEEEEECSCHHH-HSSEEEEEEEEEEEC-
T ss_pred EEEeCCCcEEEEEEEeCHH--HHHHHHHHHHHHhhcccCCc---cCCCceEEEecCCCCC-cccEEEEEEEEeeeCC
Confidence 9999999999999999763 3566777775 999999953 23335667773 2323 2456679999998764
No 6
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=95.41 E-value=0.094 Score=40.43 Aligned_cols=95 Identities=9% Similarity=0.070 Sum_probs=63.3
Q ss_pred CeEEEEEEeecCCCC------------CCCCCCCCCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcce
Q 030965 67 DKWQMSFVMPSKYGA------------NLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRV 134 (168)
Q Consensus 67 ~~~~msF~lP~~~~~------------~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~ 134 (168)
-.|.+++-+|...+. ..|.+....|.+..+|+.++++..+.|... .+.+-...|.+||.++|+..
T Consensus 102 ~~~~~~i~vp~~v~~~~~~~a~~~~~~~~~~~~~~~v~~~~ip~g~~a~~~h~G~y~--~~~~~~~~l~~wl~~~g~~~- 178 (211)
T 3b49_A 102 WLWTSILRQPDFVTEEVLEWAKEVARKKKPDVDTSRVKLVRFEEGECVQMMHVGPFS--EEVHTVAEMHQFMETEGLRN- 178 (211)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHHCTTSCCTTCEEEEEEEEEEEEEEEESCGG--GHHHHHHHHHHHHHHHTCCB-
T ss_pred eEEEEEEEcCCcccHHHHHHHHHHHhccCCCCCcccceEEEeCCceEEEEEEEcchh--hHHHHHHHHHHHHHHCCCcc-
Confidence 367788888864321 023333567999999999999999999765 35677888889999999721
Q ss_pred ec--CCcEEEEEeCCCCCC-CCCCeeeEEEEee
Q 030965 135 KE--GASVEVAQYNPPFTL-PFTRRNEIALEVE 164 (168)
Q Consensus 135 ~~--~~~~~~A~Yd~P~~~-~~~R~NEV~i~v~ 164 (168)
.. .+..+--.++.|... +-.-+=||+++|+
T Consensus 179 ~~~~~~~~~EiY~~dp~~~~~~~~~tei~ipV~ 211 (211)
T 3b49_A 179 DTGAIRKHHEIYLSDPRKANPEKMKTILRLPVS 211 (211)
T ss_dssp CBTTTBCEEEEECSCTTTSCGGGCEEEEEEEBC
T ss_pred ccCCCCcEEEEEeCCCCCCChHHeEEEEEEEeC
Confidence 11 133333444667643 2233568898874
No 7
>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}
Probab=95.15 E-value=0.24 Score=36.06 Aligned_cols=73 Identities=12% Similarity=0.023 Sum_probs=51.9
Q ss_pred CCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHH-HHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEeec
Q 030965 89 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKL-RDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER 165 (168)
Q Consensus 89 ~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L-~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~~ 165 (168)
+.+....+|+.++||.++.|-..+ .+.+--..| ..||-+.|.. ....+-+-.|...-..+-.-.-||||+|+.
T Consensus 85 ~~~~~~~ip~g~Yavf~~~G~~~~-~i~~~~~~i~~~wlp~sgy~---~~~~p~fE~Y~~~~~~~~~~~~ei~iPI~~ 158 (158)
T 3lur_A 85 AKYDVITLASSKYMVFEAQGAVPK-AVQQKMEEVHHYIHQYQANT---VKSAPFFELYQDGDTTSEKYITEIWMPVKG 158 (158)
T ss_dssp GGSEEEEECCEEEEEEEEESSTTH-HHHHHHHHHHHHHHHHCTTT---BCSSCEEEEECSSCTTSTTCEEEEEEEECC
T ss_pred CCcEEEEECCceEEEEEEecChHH-HHHHHHHHHHHhhcccCCCe---eCCCccEEEECCCCCCCcceEEEEEEEEcC
Confidence 578899999999999999997544 445555554 4689998864 233466778876433233556799999973
No 8
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=94.66 E-value=0.2 Score=39.79 Aligned_cols=73 Identities=18% Similarity=0.125 Sum_probs=53.1
Q ss_pred CCCCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCC--CCCCeeeEEEEee
Q 030965 87 KDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTL--PFTRRNEIALEVE 164 (168)
Q Consensus 87 ~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~--~~~R~NEV~i~v~ 164 (168)
.+..|.+..+|+.++++..+.|.. +.+.+....|.+||.++|+. + .+..+--.++.|+.. +-.-.-||||+|+
T Consensus 203 ~~~~~~~~~lp~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~-~--~g~~~E~y~~~~~~~~~~~~~~teI~iPv~ 277 (278)
T 1r8e_A 203 ITPDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLT-V--VSDVYELIIPIHYSPKKQEEYRVEMKIRIA 277 (278)
T ss_dssp CCTTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCC-E--EEEEEEEEEESCCCSSSCCCEEEEEEEEEC
T ss_pred ccCCceEeecCCceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCc-c--CCCeEEEEeecccccCChhheEEEEEEEec
Confidence 356799999999999999999955 45677788899999999964 2 233444444466643 2244679999986
No 9
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=93.76 E-value=0.32 Score=38.55 Aligned_cols=73 Identities=11% Similarity=0.099 Sum_probs=50.6
Q ss_pred CCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEEeC---C-CCCCC-CCCeeeEEEE
Q 030965 89 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQYN---P-PFTLP-FTRRNEIALE 162 (168)
Q Consensus 89 ~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~A~Yd---~-P~~~~-~~R~NEV~i~ 162 (168)
+.+....+|+.++||..+.|. .+.+.+-...|. +||.+.|.. ....+-+-.|. . +.... -.-.=||||+
T Consensus 210 ~~~~~~~iP~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy~---~~~~p~~E~Y~~~~~~~~~~~~~~~~tEI~iP 284 (292)
T 1d5y_A 210 LTGHPVMLQGGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNLT---RRKGQDIERYYPAEDAKAGDRPINLRCELLIP 284 (292)
T ss_dssp TTCEEEEECCEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTCE---ECSSCEEEEECGGGC----CCSCEEEEEEEEE
T ss_pred CcceEEEECCCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCCc---cCCCCcEEEEeeccccCCCCCCCceEEEEEEE
Confidence 468999999999999999994 456777888885 999999953 12334556675 3 32221 1223599999
Q ss_pred eecc
Q 030965 163 VERK 166 (168)
Q Consensus 163 v~~~ 166 (168)
|+.+
T Consensus 285 I~~k 288 (292)
T 1d5y_A 285 IRRK 288 (292)
T ss_dssp EECC
T ss_pred eehh
Confidence 9865
No 10
>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}
Probab=90.14 E-value=4.4 Score=29.87 Aligned_cols=66 Identities=11% Similarity=0.084 Sum_probs=47.6
Q ss_pred CCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCC--CcceecCCcEEEEEeCCCCCCCCCCeeeEEEEee
Q 030965 89 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDR--QFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE 164 (168)
Q Consensus 89 ~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g--~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~ 164 (168)
+.+....+|+.++||-++.|-..+ .+.+--..+..||-+.| .. ....+-+-.|+... .-||||+|+
T Consensus 103 ~g~~~~~IP~g~YAVF~~~G~~p~-~i~~~w~~I~~WlP~sg~~y~---~~~~pdfE~Y~~~~------~~eI~IpI~ 170 (170)
T 3gk6_A 103 SESVKTKVSSGKYVTFSATGEMPQ-VVIDLWNEVWNYFASEHCPHK---RAYTTDFEYYKSAN------TVEISIAVR 170 (170)
T ss_dssp TTCEEEEECCEEEEEEEEESSTTH-HHHHHHHHHHHHHC---CCCC---BCCSEEEEECCSSS------EEEEEEEBC
T ss_pred CCcEEEEECCCCEEEEEecCCCHH-HHHHHHHHHHHhhhhcCCcce---ecCcCCEEEECCCC------eEEEEEEEC
Confidence 578999999999999999995544 56666677777999988 43 23456777886531 679999985
No 11
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=88.96 E-value=3.1 Score=29.60 Aligned_cols=70 Identities=11% Similarity=0.082 Sum_probs=47.1
Q ss_pred CeEEEeeCCcEEEEEEecCcCCh--HHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEeec
Q 030965 90 SVRIKEVPKKVVAVVAFSGFVTD--EDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER 165 (168)
Q Consensus 90 ~V~i~~~p~~~v~v~~F~G~~~~--~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~~ 165 (168)
+|+|+++|+.+|+.++..|...+ ..+.+.-.+|.+++..+|+. ..+..+...|| +.. -.-+=|+.+.+..
T Consensus 8 ~v~I~~~p~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~~~~l~---~~g~~~~iy~d--~~~-~~~~~~~~~~v~~ 79 (158)
T 3e0h_A 8 VCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGKS---PSGPPFARYFG--MSA-GTFEVEFGFPVEG 79 (158)
T ss_dssp CEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTCC---CSSCCEEEEES--CTT-SCEEEEEEEECCS
T ss_pred ccEEEeeCCceEEEEEeecCHHHHHHHHHHHHHHHHHHHHHcCCC---CCCCeEEEEec--CCC-cceEEEEEEEeCC
Confidence 68999999999999999997422 12445567899999999863 34444444455 222 2445577777653
No 12
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=83.27 E-value=6.6 Score=29.77 Aligned_cols=43 Identities=16% Similarity=0.021 Sum_probs=37.3
Q ss_pred CCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHH------hcCCC
Q 030965 89 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDAL------KGDRQ 131 (168)
Q Consensus 89 ~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L------~~~g~ 131 (168)
-+|.|.++|+..++.++..|.+.+..+.+...+|..++ .++|+
T Consensus 23 ~~v~i~~~p~~~v~~i~~~g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~ 71 (211)
T 3b49_A 23 RKPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSKMGET 71 (211)
T ss_dssp SSCEEEEEEEEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHGGGSCC
T ss_pred CCcEEEEECCeeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 56899999999999999999766557888899999999 88886
No 13
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=78.34 E-value=8.9 Score=25.99 Aligned_cols=70 Identities=20% Similarity=0.160 Sum_probs=46.4
Q ss_pred CeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCC-CCCeeeEEEEee
Q 030965 90 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLP-FTRRNEIALEVE 164 (168)
Q Consensus 90 ~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~-~~R~NEV~i~v~ 164 (168)
+|.|++.|+.+++.++..|... +.+.+...+|.+++..+|+. . ...+...+|.|.... -.-+=++.+.+.
T Consensus 2 ~~~i~~~~~~~v~~~~~~g~~~-~~i~~~~~~l~~~~~~~~~~---~-~~~~gi~~~~~~~~~~~~~~~~~~~~v~ 72 (157)
T 1jyh_A 2 NYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIV---P-KEWVAVYYDNPDETPAEKLRCDTVVTVP 72 (157)
T ss_dssp CCEEEEECCEEEEEEEEESCHH-HHHHHHHHHHHHHHHHTTCC---C-SEEEEEECSCTTTSCGGGCEEEEEEEEC
T ss_pred CCEEEEeCCeEEEEEEEECCch-hhHHHHHHHHHHHHHHcCCC---C-CcEEEEECCCCCCCCHHHheEEEEEEec
Confidence 4789999999999888888542 45667778899999888863 2 234445566666321 122345555554
No 14
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=68.71 E-value=7.5 Score=30.42 Aligned_cols=73 Identities=15% Similarity=-0.000 Sum_probs=46.4
Q ss_pred CCCeEEEeeCCcEEEEEEe-cCcCChHHH-HHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCee-eEEEEee
Q 030965 88 DPSVRIKEVPKKVVAVVAF-SGFVTDEDV-KRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRN-EIALEVE 164 (168)
Q Consensus 88 d~~V~i~~~p~~~v~v~~F-~G~~~~~~~-~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~N-EV~i~v~ 164 (168)
..+|.|+++|+..++..+. .|.. ..+ .+...+|.+++.++|+. ..+.+.+..++++++..-.+.. ++.+.+.
T Consensus 121 ~~~v~I~~~p~~~v~~~~~~~~~~--~~i~~~~~~~l~~~~~~~~l~---~~~~~g~~~~~~~~~~~~~~~~~~~~v~v~ 195 (278)
T 1r8e_A 121 LGEVFVLDEEEIRIIQTEAEGIGP--ENVLNASYSKLKKFIESADGF---TNNSYGATFSFQPYTSIDEMTYRHIFTPVL 195 (278)
T ss_dssp TTCCEEEEECCEEEEEEECTTCCT--TTCCGGGGHHHHHHHHHHHSS---CCCCEEEEECCCCCSCGGGCCCSEEEEECC
T ss_pred CCceEEEEcCCeEEEEeecCCCCh--HhHHHHHHHHHHHHHHHcCCc---ccCceEEEEEhHHhhcCCCcceeEEEEEec
Confidence 4579999999999998888 5533 222 34456788899888753 2344544445566654322332 6777765
Q ss_pred c
Q 030965 165 R 165 (168)
Q Consensus 165 ~ 165 (168)
.
T Consensus 196 ~ 196 (278)
T 1r8e_A 196 T 196 (278)
T ss_dssp C
T ss_pred C
Confidence 3
No 15
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=50.67 E-value=27 Score=24.36 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=36.5
Q ss_pred CeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCC
Q 030965 90 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQ 131 (168)
Q Consensus 90 ~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~ 131 (168)
.+.|....+..+.+.+.+|..+.+++++-...|.+.|++.+.
T Consensus 10 mi~i~~~~~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~~~ 51 (126)
T 2q3l_A 10 AIGIERSQDDFYLAFKAVGKLTHEDYEQMTPLLESALAGIKT 51 (126)
T ss_dssp EEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTTTCCS
T ss_pred eEEEEEcCCCCEEEEEEEeeECHHHHHHHHHHHHHHHHhCCC
Confidence 467777788889999999999999999988888888998875
No 16
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=47.64 E-value=46 Score=23.17 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=36.2
Q ss_pred CeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhc--CCCc
Q 030965 90 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKG--DRQF 132 (168)
Q Consensus 90 ~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~--~g~~ 132 (168)
.|.+....+..+.+.+.+|..+.+++++-...|.+.|++ .+..
T Consensus 10 mi~i~~~~~~~vl~v~~~G~lt~eD~~~l~~~i~~~l~~~~~~~i 54 (127)
T 2ook_A 10 SIGINRIESVFFVTLKAIGTLTHEDYLVITPMLEGALSQVDQPKV 54 (127)
T ss_dssp EEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred eEEEEEcCCCCEEEEEEeeeECHHHHHHHHHHHHHHHhhccCCCE
Confidence 356667778888999999999999999888888889999 7753
No 17
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=41.73 E-value=57 Score=25.11 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=37.4
Q ss_pred CCeEEEeeCCcEEEEEEecCcCChHHHH----HHHHHHHHHHhcCCCcceecCCcEEEEEeCCCC
Q 030965 89 PSVRIKEVPKKVVAVVAFSGFVTDEDVK----RRELKLRDALKGDRQFRVKEGASVEVAQYNPPF 149 (168)
Q Consensus 89 ~~V~i~~~p~~~v~v~~F~G~~~~~~~~----~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~ 149 (168)
-+|.|.+.|+.+++.++..|......+. .....|.+.|...+.. ..+..+...||.|-
T Consensus 124 m~~~I~~~~~~~v~gi~~~~~~~~~~~~~~~~~~i~~lw~~~~~~~~~---~~~~~~gi~~d~~~ 185 (292)
T 1d5y_A 124 PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT---IPPVLYGLNETRPS 185 (292)
T ss_dssp CCEEEEEECCEEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSS---CCSCEEEEEEEEEC
T ss_pred CCceEEEeCCeEEeeEEeeeccccccccccchhhhHHHHHHHhcccCC---CCCCEEEEEecCCC
Confidence 4699999999999999999865543332 4455666666554421 22345556666554
No 18
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=27.22 E-value=24 Score=17.30 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=11.3
Q ss_pred HHHHHhhccCCCCC
Q 030965 18 NVLAEYLFGKNTKR 31 (168)
Q Consensus 18 ~~L~~YI~G~N~~~ 31 (168)
+.|.+|+-+++++.
T Consensus 6 hqllrylldkdek~ 19 (21)
T 3dct_B 6 HQLLRYLLDKDEKD 19 (26)
T ss_pred HHHHHHHHccchhh
Confidence 57999999988654
No 19
>2jkg_A Profilin; proline-rich ligand, protein-binding, malaria, cytoskeleton; 1.89A {Plasmodium falciparum} PDB: 2jkf_A
Probab=23.96 E-value=1.8e+02 Score=21.98 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=36.7
Q ss_pred CCeEEEeeCCcEEEEEEecCc--CChHHHHHHHHHHHHHHhcCCCc
Q 030965 89 PSVRIKEVPKKVVAVVAFSGF--VTDEDVKRRELKLRDALKGDRQF 132 (168)
Q Consensus 89 ~~V~i~~~p~~~v~v~~F~G~--~~~~~~~~~~~~L~~~L~~~g~~ 132 (168)
..|.|...|...+.+-.|.-- .+.......+.+|.++|.+.|..
T Consensus 127 gGv~ivKT~~qaiVIg~YdE~k~~~~g~c~~~ve~LadYL~~~Gy~ 172 (179)
T 2jkg_A 127 GGLHLVKVPGGNILVVLYDEEKEQDRGNSKIAALTFAKELAESSQL 172 (179)
T ss_dssp EEEEEEEETTTEEEEEEEEGGGTCCHHHHHHHHHHHHHHHHHC---
T ss_pred CcEEEEEECCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHcCch
Confidence 568889898888888888877 88889999999999999999953
No 20
>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A*
Probab=22.65 E-value=2.1e+02 Score=20.30 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=31.4
Q ss_pred eEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCC
Q 030965 91 VRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDR 130 (168)
Q Consensus 91 V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g 130 (168)
|.|..- ...+.+-.|..-.........+.+|.++|.+.|
T Consensus 101 v~i~KT-~~alvI~~y~e~~~~g~~~~~ve~ladYL~~~G 139 (140)
T 2v8f_A 101 VAVGRA-GRVLVFVMGKEGVHGGGLNKKAYSMAKYLRDSG 139 (140)
T ss_dssp EEEEEC-SSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEc-CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 666665 445556677777889999999999999999987
No 21
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=22.20 E-value=2e+02 Score=19.83 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=31.8
Q ss_pred CeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCC
Q 030965 90 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDR 130 (168)
Q Consensus 90 ~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g 130 (168)
.|.|... ...+.+-.|.+-.........+++|.++|.+.|
T Consensus 85 Gv~i~kT-~~aivI~~y~~~~~~g~~~~~ve~ladyL~~~g 124 (125)
T 1acf_A 85 GVITVKT-SKAILVGVYNEKIQPGTAANVVEKLADYLIGQG 124 (125)
T ss_dssp EEEEEEC-SSEEEEEEECTTSCHHHHHHHHHHHHHHHHTTT
T ss_pred eEEEEEC-CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4666655 344556678888899999999999999999987
No 22
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=20.54 E-value=24 Score=23.60 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=20.0
Q ss_pred hhHHHHHHHHhhccCCCCCcccCCCc
Q 030965 13 ASRSFNVLAEYLFGKNTKRETMEMTT 38 (168)
Q Consensus 13 ~~~gF~~L~~YI~G~N~~~~ki~MT~ 38 (168)
..+-.+.|++||..+..+..+|++|+
T Consensus 29 lqkvlnelmdyikkqgakrvrisita 54 (106)
T 1qys_A 29 LQKVLNELMDYIKKQGAKRVRISITA 54 (106)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEe
Confidence 35678999999987777777777664
Done!