BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030966
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis
thaliana GN=At4g01150 PE=1 SV=1
Length = 164
Score = 116 bits (291), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 82/103 (79%), Gaps = 3/103 (2%)
Query: 64 AVPKEESPVDGLTNELLDNLKIKFDS-EDKYSLVLYGTGALLALWLTTVVVGAIDSIPLF 122
A +E S +D TNEL+ +LK K+D E+K ++++YG GA++A+WL+++VVGAI+S+PL
Sbjct: 63 ASSEETSSID--TNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLL 120
Query: 123 PKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGS 165
PK+ME+VGLGYT WF +RYLLFK +R ELA IE LK+++ GS
Sbjct: 121 PKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGS 163
>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, chloroplastic
OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2
Length = 174
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 53/77 (68%)
Query: 90 EDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRD 149
+DKY++ ++ALW + ++ AID +PL P ++E+VG+GYT WF+++ L+FK +R+
Sbjct: 98 DDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDRE 157
Query: 150 ELATKIEELKQQVLGSN 166
L K++ + +LGS+
Sbjct: 158 ALFEKVKSTYKDILGSS 174
>sp|Q119Z5|SYE_TRIEI Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101)
GN=gltX PE=3 SV=1
Length = 881
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 22/138 (15%)
Query: 48 DVPAVEKNVYNESVATAVPKEESPVDGLTNELLD----------NLKIKFDSEDKYSLV- 96
D E+ V + V T++ ++ PVD +TN+ ++ + I F+ D + +
Sbjct: 742 DAETREQKVATQ-VETSILDDQKPVDTVTNQTVEVEQPNKIKEQFINIFFNFPDYINQLY 800
Query: 97 --------LYGTGALLALWLT--TVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKK 146
L+G AL+ L T VV+ A+D IP+ + E++G+ Y +WF +RYLL +
Sbjct: 801 QQYQGQLKLFGWLALVILTFTFMAVVIEALDGIPILSIIFELIGVIYLVWFVYRYLLKRS 860
Query: 147 NRDELATKIEELKQQVLG 164
NR EL KIE +K+++ G
Sbjct: 861 NRQELLDKIENIKREIFG 878
>sp|Q8YX97|SYV_NOSS1 Valine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=valS PE=3 SV=1
Length = 1014
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 95 LVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATK 154
LV+ G L+ L + V +D++P E+VGLGY+ WF R LL R K
Sbjct: 850 LVIAG---LVFLRVALAVADTVDNVPFLGTFFEIVGLGYSAWFVTRNLLSTPARKRFLAK 906
Query: 155 I 155
Sbjct: 907 F 907
>sp|B2A1G4|HEM1_NATTJ Glutamyl-tRNA reductase OS=Natranaerobius thermophilus (strain ATCC
BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=hemA PE=3 SV=1
Length = 458
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 46 AEDVPAVEKNVYNESVATAVPKEESPVDGLTNELLDN------LKIK-FDSEDKYSLVLY 98
AEDV +E Y++ + PKE+ VD LT +++ L+IK F EDK L +
Sbjct: 354 AEDVRKMELEKYHKKLKNLSPKEQEAVDKLTKSIVNKILKEPVLRIKEFAVEDKSELYMA 413
Query: 99 GTGALLAL 106
L L
Sbjct: 414 TLAQLFDL 421
>sp|P74857|SSAN_SALTY Probable secretion system apparatus ATP synthase SsaN OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=ssaN PE=3 SV=1
Length = 433
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 75 LTNELLDNLKIKFDSEDKYSL---VLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGL 131
+ NEL+ L++K+ D Y + + LL WL V +G + I +L EVVG+
Sbjct: 1 MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI 60
>sp|A5G9I7|KUP_GEOUR Probable potassium transport system protein kup OS=Geobacter
uraniireducens (strain Rf4) GN=kup PE=3 SV=1
Length = 605
Score = 30.0 bits (66), Expect = 7.3, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 86 KFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWF 137
+F DK + G L+ LW + V + SI FPK++ V Y + F
Sbjct: 158 QFKGTDKVAAAF---GPLMVLWFGALTVSGLVSIATFPKILGAVSPHYAINF 206
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,147,661
Number of Sequences: 539616
Number of extensions: 2625214
Number of successful extensions: 6191
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 6180
Number of HSP's gapped (non-prelim): 21
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)