Query 030966
Match_columns 168
No_of_seqs 126 out of 182
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 07:14:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02777 photosystem I P subun 100.0 2.1E-35 4.5E-40 239.8 8.9 92 75-166 75-167 (167)
2 PF14159 CAAD: CAAD domains of 100.0 1.3E-30 2.9E-35 192.6 5.0 84 81-164 2-90 (90)
3 PF11364 DUF3165: Protein of u 75.2 1.7 3.6E-05 32.5 1.3 59 91-149 22-80 (81)
4 PF11351 DUF3154: Protein of u 55.7 16 0.00035 28.2 3.5 21 123-143 97-117 (123)
5 PF01810 LysE: LysE type trans 54.3 10 0.00022 29.6 2.2 36 113-148 48-84 (191)
6 PRK09304 arginine exporter pro 52.4 8.7 0.00019 31.2 1.6 48 96-143 39-89 (207)
7 PF05251 UPF0197: Uncharacteri 48.4 3.8 8.3E-05 30.2 -1.0 35 120-154 17-51 (77)
8 TIGR00949 2A76 The Resistance 48.0 11 0.00023 29.5 1.4 34 110-143 41-74 (185)
9 PF06072 Herpes_US9: Alphaherp 47.3 66 0.0014 22.9 5.1 46 71-116 6-55 (60)
10 PF06716 DUF1201: Protein of u 46.5 23 0.00051 24.4 2.7 36 93-148 6-41 (54)
11 PRK10958 leucine export protei 46.2 12 0.00025 30.7 1.4 34 110-143 63-96 (212)
12 PRK10520 rhtB homoserine/homos 43.6 14 0.00031 29.6 1.6 37 108-144 57-93 (205)
13 PRK10229 threonine efflux syst 43.1 14 0.0003 29.6 1.4 34 110-143 58-91 (206)
14 PRK10323 cysteine/O-acetylseri 41.2 17 0.00036 29.3 1.6 45 100-144 48-93 (195)
15 TIGR00948 2a75 L-lysine export 37.8 14 0.00031 28.9 0.7 37 108-144 40-76 (177)
16 PF10958 DUF2759: Protein of u 30.0 23 0.0005 24.5 0.6 42 102-143 3-44 (52)
17 COG4956 Integral membrane prot 29.8 65 0.0014 29.9 3.6 60 94-155 80-141 (356)
18 PF13779 DUF4175: Domain of un 28.8 62 0.0013 32.8 3.6 60 97-157 7-70 (820)
19 KOG4452 Predicted membrane pro 28.2 17 0.00037 26.9 -0.3 41 119-159 18-59 (79)
20 COG1280 RhtB Putative threonin 28.1 29 0.00063 28.4 1.0 36 110-145 59-94 (208)
21 PF11833 DUF3353: Protein of u 26.2 62 0.0013 27.1 2.6 29 95-123 142-170 (194)
22 KOG2927 Membrane component of 21.8 43 0.00094 31.2 1.0 45 99-143 224-280 (372)
23 PLN02777 photosystem I P subun 21.6 1.1E+02 0.0025 25.6 3.3 62 71-135 78-139 (167)
24 PRK07193 fliF flagellar MS-rin 20.4 1.4E+02 0.0031 28.8 4.2 15 75-89 4-18 (552)
25 PF01616 Orbi_NS3: Orbivirus N 20.1 1.3E+02 0.0029 25.6 3.5 85 78-163 74-167 (195)
No 1
>PLN02777 photosystem I P subunit (PSI-P)
Probab=100.00 E-value=2.1e-35 Score=239.76 Aligned_cols=92 Identities=35% Similarity=0.737 Sum_probs=88.9
Q ss_pred hhHHHHHHhhhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCccchheehhheeeehhhhhhhcccccHHHHHH
Q 030966 75 LTNELLDNLKIKFD-SEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELAT 153 (168)
Q Consensus 75 ~~~e~l~~l~~kwd-~edK~~v~~~g~gaiVal~v~~aVl~AId~IPLlp~llELVGlgYs~WFvyRyLL~~~~R~eL~~ 153 (168)
+..|+++.++++|| .|||++++++++++||++|++.+||+|||+|||+|++||||||||++||+||||+|+++|+||++
T Consensus 75 ~~~ei~k~~~e~Wd~~EdK~av~~l~~aaiVal~v~~~VL~AId~lPLlP~lLELVGigYs~WF~yRyLLfke~ReeL~~ 154 (167)
T PLN02777 75 ELPEIVKTVQEAWDKVEDKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIE 154 (167)
T ss_pred cHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHhcCcccHHHHHH
Confidence 35699999999999 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCC
Q 030966 154 KIEELKQQVLGSN 166 (168)
Q Consensus 154 ki~~lk~~I~G~~ 166 (168)
+|+++|++|+|++
T Consensus 155 ki~~lk~~IlG~s 167 (167)
T PLN02777 155 KIKDTYKEIIGSS 167 (167)
T ss_pred HHHHHHHHhhCCC
Confidence 9999999999963
No 2
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=99.96 E-value=1.3e-30 Score=192.59 Aligned_cols=84 Identities=49% Similarity=0.878 Sum_probs=73.3
Q ss_pred HHhhhhhc-cccchhhHHHHH----HHHHHHHHHHHHHHHhhcCCCccchheehhheeeehhhhhhhcccccHHHHHHHH
Q 030966 81 DNLKIKFD-SEDKYSLVLYGT----GALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKI 155 (168)
Q Consensus 81 ~~l~~kwd-~edK~~v~~~g~----gaiVal~v~~aVl~AId~IPLlp~llELVGlgYs~WFvyRyLL~~~~R~eL~~ki 155 (168)
++++++|+ ..++|...++++ ++++++|++++|++|||+|||+|++|||||+||++||+||||+++++||||.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i 81 (90)
T PF14159_consen 2 SKLPEYWGEFFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAENRQELLQKI 81 (90)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHH
Confidence 45555665 345555555554 5599999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcC
Q 030966 156 EELKQQVLG 164 (168)
Q Consensus 156 ~~lk~~I~G 164 (168)
+++|++|+|
T Consensus 82 ~~~k~~i~G 90 (90)
T PF14159_consen 82 QSLKKEILG 90 (90)
T ss_pred HHHHHHhcC
Confidence 999999998
No 3
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=75.18 E-value=1.7 Score=32.52 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=51.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhcCCCccchheehhheeeehhhhhhhcccccHH
Q 030966 91 DKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRD 149 (168)
Q Consensus 91 dK~~v~~~g~gaiVal~v~~aVl~AId~IPLlp~llELVGlgYs~WFvyRyLL~~~~R~ 149 (168)
-|.++=..+..+++++-+..++++.+.-.-+-|-+|=-+|+...++|.+|.+.+=++|+
T Consensus 22 Ir~Tln~i~~v~~~vlLivla~ls~~ki~q~P~Eifv~~~Mi~l~y~alrDi~~l~~k~ 80 (81)
T PF11364_consen 22 IRGTLNMIGLVGLVVLLIVLAVLSFIKIFQLPPEIFVGLAMIVLGYFALRDISKLSTKK 80 (81)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCcCC
Confidence 36677788888889999999999999999999999999999999999999988766654
No 4
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=55.72 E-value=16 Score=28.23 Aligned_cols=21 Identities=24% Similarity=0.204 Sum_probs=17.8
Q ss_pred cchheehhheeeehhhhhhhc
Q 030966 123 PKLMEVVGLGYTLWFSWRYLL 143 (168)
Q Consensus 123 p~llELVGlgYs~WFvyRyLL 143 (168)
.++..|.|++++++|+.|..-
T Consensus 97 e~lw~Llg~~vlgy~~~Rs~e 117 (123)
T PF11351_consen 97 EPLWWLLGAGVLGYFGARSQE 117 (123)
T ss_pred HHHHHHHHHHHhhhHHHhhHH
Confidence 467799999999999999643
No 5
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=54.35 E-value=10 Score=29.62 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=29.6
Q ss_pred HHHh-hcCCCccchheehhheeeehhhhhhhcccccH
Q 030966 113 VGAI-DSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNR 148 (168)
Q Consensus 113 l~AI-d~IPLlp~llELVGlgYs~WFvyRyLL~~~~R 148 (168)
+.++ +..|.+-..++++|..|..|+.|+-+..+.+.
T Consensus 48 ~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~ 84 (191)
T PF01810_consen 48 LSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKFSS 84 (191)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 3444 66999999999999999999999988755443
No 6
>PRK09304 arginine exporter protein; Provisional
Probab=52.40 E-value=8.7 Score=31.16 Aligned_cols=48 Identities=10% Similarity=0.159 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHH---HHHHHHhhcCCCccchheehhheeeehhhhhhhc
Q 030966 96 VLYGTGALLALWLT---TVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLL 143 (168)
Q Consensus 96 ~~~g~gaiVal~v~---~aVl~AId~IPLlp~llELVGlgYs~WFvyRyLL 143 (168)
...|+..-..+|+. .++-.-+...|.+=.++.++|-.|..|..||-+-
T Consensus 39 ~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~r 89 (207)
T PRK09304 39 IALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFK 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443333444433 3333447899999999999999999999998664
No 7
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=48.43 E-value=3.8 Score=30.22 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=25.7
Q ss_pred CCccchheehhheeeehhhhhhhcccccHHHHHHH
Q 030966 120 PLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATK 154 (168)
Q Consensus 120 PLlp~llELVGlgYs~WFvyRyLL~~~~R~eL~~k 154 (168)
|.+.-+|=.+|+.+++||........+.++.+.++
T Consensus 17 p~La~vll~iGl~fta~Ffiyevts~k~~r~i~kE 51 (77)
T PF05251_consen 17 PHLAVVLLAIGLFFTAWFFIYEVTSTKKTRSIAKE 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHH
Confidence 55566677899999999999888866655444443
No 8
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=48.02 E-value=11 Score=29.52 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCCccchheehhheeeehhhhhhhc
Q 030966 110 TVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLL 143 (168)
Q Consensus 110 ~aVl~AId~IPLlp~llELVGlgYs~WFvyRyLL 143 (168)
.++-.-++..|.+-..+.++|-.|..|+.||-+.
T Consensus 41 ~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~ 74 (185)
T TIGR00949 41 LGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLR 74 (185)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788999999999999999999998664
No 9
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=47.35 E-value=66 Score=22.90 Aligned_cols=46 Identities=15% Similarity=0.106 Sum_probs=29.1
Q ss_pred CCcchhHHHHHHhhhhh---ccccchhh-HHHHHHHHHHHHHHHHHHHHh
Q 030966 71 PVDGLTNELLDNLKIKF---DSEDKYSL-VLYGTGALLALWLTTVVVGAI 116 (168)
Q Consensus 71 ~v~~~~~e~l~~l~~kw---d~edK~~v-~~~g~gaiVal~v~~aVl~AI 116 (168)
++++.++|+|..+..+= ..-.+... .+.++.+++++-++++.++++
T Consensus 6 SDnETA~~FL~RvGr~q~~~r~RrRrc~~~v~~v~~~~~~c~~S~~lG~~ 55 (60)
T PF06072_consen 6 SDNETATEFLRRVGRQQHASRRRRRRCRLAVAIVFAVVALCVLSGGLGAL 55 (60)
T ss_pred cccccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899998886221 11223333 344456667888888888876
No 10
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=46.49 E-value=23 Score=24.43 Aligned_cols=36 Identities=31% Similarity=0.634 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCCccchheehhheeeehhhhhhhcccccH
Q 030966 93 YSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNR 148 (168)
Q Consensus 93 ~~v~~~g~gaiVal~v~~aVl~AId~IPLlp~llELVGlgYs~WFvyRyLL~~~~R 148 (168)
++.+.+|+|.++-+.+.-. .|-.||+|+.+||..+-
T Consensus 6 Rs~L~~~F~~lIC~Fl~~~--------------------~~F~~F~~Kqilfr~~~ 41 (54)
T PF06716_consen 6 RSYLLLAFGFLICLFLFCL--------------------VVFIWFVYKQILFRNNP 41 (54)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHccCC
Confidence 4567778888877766543 36789999999986543
No 11
>PRK10958 leucine export protein LeuE; Provisional
Probab=46.24 E-value=12 Score=30.71 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=28.3
Q ss_pred HHHHHHhhcCCCccchheehhheeeehhhhhhhc
Q 030966 110 TVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLL 143 (168)
Q Consensus 110 ~aVl~AId~IPLlp~llELVGlgYs~WFvyRyLL 143 (168)
.++-.-+...|.+-..+.++|.+|..|+.+|-+-
T Consensus 63 ~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~~ 96 (212)
T PRK10958 63 AGVASLLKATPLLFNVVKYLGAAYLLYLGVKMLR 96 (212)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566788999999999999999999998663
No 12
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=43.65 E-value=14 Score=29.57 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=30.6
Q ss_pred HHHHHHHHhhcCCCccchheehhheeeehhhhhhhcc
Q 030966 108 LTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLF 144 (168)
Q Consensus 108 v~~aVl~AId~IPLlp~llELVGlgYs~WFvyRyLL~ 144 (168)
...++-.-++..|.+=.+++++|..|..|+.+|-+..
T Consensus 57 ~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s 93 (205)
T PRK10520 57 VGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRA 93 (205)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3355556678889999999999999999999997754
No 13
>PRK10229 threonine efflux system; Provisional
Probab=43.05 E-value=14 Score=29.59 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=28.9
Q ss_pred HHHHHHhhcCCCccchheehhheeeehhhhhhhc
Q 030966 110 TVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLL 143 (168)
Q Consensus 110 ~aVl~AId~IPLlp~llELVGlgYs~WFvyRyLL 143 (168)
.++-.-+...|.+-.++.++|..|..|+.++-+-
T Consensus 58 ~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~ 91 (206)
T PRK10229 58 LGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLR 91 (206)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566788999999999999999999998775
No 14
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=41.20 E-value=17 Score=29.31 Aligned_cols=45 Identities=20% Similarity=0.411 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHH-HHhhcCCCccchheehhheeeehhhhhhhcc
Q 030966 100 TGALLALWLTTVVV-GAIDSIPLFPKLMEVVGLGYTLWFSWRYLLF 144 (168)
Q Consensus 100 ~gaiVal~v~~aVl-~AId~IPLlp~llELVGlgYs~WFvyRyLL~ 144 (168)
.|.++...+..+.+ .-+...|.+=.++.++|..|..|..||-+..
T Consensus 48 ~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s 93 (195)
T PRK10323 48 LGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATS 93 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444344444 3356889999999999999999999997753
No 15
>TIGR00948 2a75 L-lysine exporter.
Probab=37.79 E-value=14 Score=28.89 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcCCCccchheehhheeeehhhhhhhcc
Q 030966 108 LTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLF 144 (168)
Q Consensus 108 v~~aVl~AId~IPLlp~llELVGlgYs~WFvyRyLL~ 144 (168)
...++-..++..|.+=..+.++|-.|..|..||-+..
T Consensus 40 ~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~ 76 (177)
T TIGR00948 40 GVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKT 76 (177)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445667899999999999999999999988754
No 16
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=29.98 E-value=23 Score=24.54 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCccchheehhheeeehhhhhhhc
Q 030966 102 ALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLL 143 (168)
Q Consensus 102 aiVal~v~~aVl~AId~IPLlp~llELVGlgYs~WFvyRyLL 143 (168)
++|++-..-+++.++.+=-+++-+|-++-+..-+||+..-++
T Consensus 3 ~Lvtlla~~g~~rslK~KN~l~i~F~~~t~~VFGwFtimTii 44 (52)
T PF10958_consen 3 GLVTLLAAFGVLRSLKNKNFLGIGFALVTVAVFGWFTIMTII 44 (52)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777888888888888888888888889999876554
No 17
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=29.83 E-value=65 Score=29.88 Aligned_cols=60 Identities=15% Similarity=0.328 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh--cCCCccchheehhheeeehhhhhhhcccccHHHHHHHH
Q 030966 94 SLVLYGTGALLALWLTTVVVGAID--SIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKI 155 (168)
Q Consensus 94 ~v~~~g~gaiVal~v~~aVl~AId--~IPLlp~llELVGlgYs~WFvyRyLL~~~~R~eL~~ki 155 (168)
.++.-.+|.+++|.++.-+...+. .+|++..++=.++-...++|.+++-.+ +|+|+..-+
T Consensus 80 ~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k--~~de~~~l~ 141 (356)
T COG4956 80 TILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADK--KRDEFLRLL 141 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhhh--hhHHHHHhc
Confidence 344444788888888877777544 468889999999999999999886543 466665443
No 18
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=28.76 E-value=62 Score=32.77 Aligned_cols=60 Identities=22% Similarity=0.196 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccchh----eehhheeeehhhhhhhcccccHHHHHHHHHH
Q 030966 97 LYGTGALLALWLTTVVVGAIDSIPLFPKLM----EVVGLGYTLWFSWRYLLFKKNRDELATKIEE 157 (168)
Q Consensus 97 ~~g~gaiVal~v~~aVl~AId~IPLlp~ll----ELVGlgYs~WFvyRyLL~~~~R~eL~~ki~~ 157 (168)
++-+..++++.++.+.++.-+.+|...-.. =++++++++||-.|. ++.+.|.|....|+.
T Consensus 7 ~~p~~~v~~lflal~~lGl~~~lp~~~~~~~l~~~~~a~~~al~~~lrr-fr~Pt~~ea~~RLe~ 70 (820)
T PF13779_consen 7 LWPLLSVLALFLALSWLGLWDLLPDWLRWALLAAFAAAALAALVRGLRR-FRWPTRAEALRRLER 70 (820)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHhh
Confidence 344566777777777777777777643332 345666677677766 488999999999875
No 19
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=28.19 E-value=17 Score=26.88 Aligned_cols=41 Identities=27% Similarity=0.397 Sum_probs=27.4
Q ss_pred CCCccchheehhheeeehhhhhhhc-ccccHHHHHHHHHHHh
Q 030966 119 IPLFPKLMEVVGLGYTLWFSWRYLL-FKKNRDELATKIEELK 159 (168)
Q Consensus 119 IPLlp~llELVGlgYs~WFvyRyLL-~~~~R~eL~~ki~~lk 159 (168)
.|.+..+|=-||+.+++||..--.. .|.+|.-+.+-+-++.
T Consensus 18 fPhLttvLl~iG~fftAwFf~~~VtStKy~r~l~KELlIsl~ 59 (79)
T KOG4452|consen 18 FPHLTTVLLGIGLFFTAWFFMIQVTSTKYNRNLLKELLISLT 59 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHheeEecchhhHHHHHHHHHHHH
Confidence 5777888888999999999754443 4556654444444443
No 20
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=28.07 E-value=29 Score=28.45 Aligned_cols=36 Identities=17% Similarity=0.438 Sum_probs=30.1
Q ss_pred HHHHHHhhcCCCccchheehhheeeehhhhhhhccc
Q 030966 110 TVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFK 145 (168)
Q Consensus 110 ~aVl~AId~IPLlp~llELVGlgYs~WFvyRyLL~~ 145 (168)
.++-.-+..-|.+-.++.++|-.|..|..++-+..+
T Consensus 59 ~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~~~ra~ 94 (208)
T COG1280 59 LGLAALLATSPALFTVLKLAGAAYLLYLGWKALRAG 94 (208)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344466788899999999999999999999977744
No 21
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=26.23 E-value=62 Score=27.08 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 030966 95 LVLYGTGALLALWLTTVVVGAIDSIPLFP 123 (168)
Q Consensus 95 v~~~g~gaiVal~v~~aVl~AId~IPLlp 123 (168)
-++++++++++-|+.++++...-..+++|
T Consensus 142 A~~~~~~~L~~G~~lGs~l~~~l~~~~~p 170 (194)
T PF11833_consen 142 AFLWTLGGLVVGLILGSLLASWLPVDIVP 170 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 36777899999999999998877776666
No 22
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.77 E-value=43 Score=31.21 Aligned_cols=45 Identities=33% Similarity=0.440 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhh------------cCCCccchheehhheeeehhhhhhhc
Q 030966 99 GTGALLALWLTTVVVGAID------------SIPLFPKLMEVVGLGYTLWFSWRYLL 143 (168)
Q Consensus 99 g~gaiVal~v~~aVl~AId------------~IPLlp~llELVGlgYs~WFvyRyLL 143 (168)
|.|+|++++++.+++..|- .+=++|-|+|=||+.=+-|=.|-|=-
T Consensus 224 g~~gfl~~IlvLaIvRlILF~I~~il~~g~~g~W~FPNL~eDvGfleSF~PLy~~~~ 280 (372)
T KOG2927|consen 224 GAGGFLAFILVLAIVRLILFGITWILTGGKHGFWLFPNLTEDVGFLESFKPLYEYHY 280 (372)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEeccchhhhhhHHHhhcccccccC
Confidence 3455666666666666553 45588999999999877755554433
No 23
>PLN02777 photosystem I P subunit (PSI-P)
Probab=21.64 E-value=1.1e+02 Score=25.62 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=48.4
Q ss_pred CCcchhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCccchheehhheeee
Q 030966 71 PVDGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTL 135 (168)
Q Consensus 71 ~v~~~~~e~l~~l~~kwd~edK~~v~~~g~gaiVal~v~~aVl~AId~IPLlp~llELVGlgYs~ 135 (168)
.+..+.+|.+++..+||.. -++++.++.++.........||.|=-+|-+=-|.=+.=.+|.+
T Consensus 78 ei~k~~~e~Wd~~EdK~av---~~l~~aaiVal~v~~~VL~AId~lPLlP~lLELVGigYs~WF~ 139 (167)
T PLN02777 78 EIVKTVQEAWDKVEDKYAV---SSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFA 139 (167)
T ss_pred HHHHHHHHHHhhhcchhHH---HHHHHHHHHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhh
Confidence 4455678999999999984 6899999999989999999999999998775555554444443
No 24
>PRK07193 fliF flagellar MS-ring protein; Reviewed
Probab=20.36 E-value=1.4e+02 Score=28.76 Aligned_cols=15 Identities=47% Similarity=0.782 Sum_probs=11.8
Q ss_pred hhHHHHHHhhhhhcc
Q 030966 75 LTNELLDNLKIKFDS 89 (168)
Q Consensus 75 ~~~e~l~~l~~kwd~ 89 (168)
.++++++++++.|..
T Consensus 4 ~~~~~~~~l~~~w~~ 18 (552)
T PRK07193 4 LMNDMLDKLKQKWSP 18 (552)
T ss_pred hHHHHHHHHHHHHHh
Confidence 456789999999974
No 25
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=20.12 E-value=1.3e+02 Score=25.63 Aligned_cols=85 Identities=22% Similarity=0.305 Sum_probs=44.6
Q ss_pred HHHHHhhhhhc-cccchhhHHHHH--HHHHHHHHHHHHHHHhhcCCCccchheehh-----h-eeeehhhhhhhcccccH
Q 030966 78 ELLDNLKIKFD-SEDKYSLVLYGT--GALLALWLTTVVVGAIDSIPLFPKLMEVVG-----L-GYTLWFSWRYLLFKKNR 148 (168)
Q Consensus 78 e~l~~l~~kwd-~edK~~v~~~g~--gaiVal~v~~aVl~AId~IPLlp~llELVG-----l-gYs~WFvyRyLL~~~~R 148 (168)
.+|.+++.+.- ...|+.++-++. .++|++ +++.+....+-.+.++..++-.| + +.+.-+..-.+.-+..|
T Consensus 74 ~~L~~L~~el~~~kRk~~il~~~~li~a~v~l-~ts~~~~~~~~~~~~~~~l~~~~~~~~~~~~inL~~T~~~~~~~r~~ 152 (195)
T PF01616_consen 74 QILPKLKHELRKLKRKRRILHIVELIAAIVAL-LTSVVMAISDMSPELKSNLKEKNWISITLHVINLIATTAMMFCARIE 152 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665443 366777777763 222222 22233333333344444444111 0 11112223333456678
Q ss_pred HHHHHHHHHHhhhhc
Q 030966 149 DELATKIEELKQQVL 163 (168)
Q Consensus 149 ~eL~~ki~~lk~~I~ 163 (168)
+.|-++++.+|++|.
T Consensus 153 ~~l~~~i~r~kkeI~ 167 (195)
T PF01616_consen 153 RSLQEQIKRLKKEIM 167 (195)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999986
Done!