Query 030966
Match_columns 168
No_of_seqs 126 out of 182
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 11:15:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fyu_K Ubiquinol-cytochrome C 25.0 62 0.0021 21.5 3.0 34 93-126 19-52 (56)
2 2amj_A Modulator of drug activ 17.4 32 0.0011 26.5 0.4 43 122-164 162-204 (204)
3 2k1k_A Ephrin type-A receptor 15.4 1.6E+02 0.0056 17.7 3.2 16 95-110 13-28 (38)
4 3lcm_A SMU.1420, putative oxid 14.7 38 0.0013 25.7 0.2 45 120-164 144-190 (196)
5 3rpe_A MDAB, modulator of drug 14.7 76 0.0026 25.4 2.0 42 123-164 176-217 (218)
6 2xpp_A IWS1, ECU08_0440; trans 13.8 1.4E+02 0.0049 22.8 3.2 76 92-167 54-143 (145)
7 2x43_S Sherp; membrane protein 13.7 1.2E+02 0.004 21.0 2.4 22 146-167 37-58 (67)
8 2knc_B Integrin beta-3; transm 13.4 76 0.0026 22.0 1.4 28 134-161 27-54 (79)
9 2zjs_E Preprotein translocase 12.2 2.6E+02 0.0088 17.9 3.7 37 92-130 24-60 (60)
10 4g6h_A Rotenone-insensitive NA 11.8 1.2E+02 0.0039 26.5 2.4 35 132-166 460-497 (502)
No 1
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=25.01 E-value=62 Score=21.49 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCCccchh
Q 030966 93 YSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLM 126 (168)
Q Consensus 93 ~~v~~~g~gaiVal~v~~aVl~AId~IPLlp~ll 126 (168)
|+...+|.++.+++.-+.-==.-++.||++.+-|
T Consensus 19 psa~~~Gaaa~v~~ly~tdwr~IL~~IP~ig~kf 52 (56)
T 2fyu_K 19 PTASLWGAVGAVGLVWATDWRLILDWVPYINGKF 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHTSSSSCCCCC
T ss_pred hhhhhhhhhhhhheeeeccHHHHHhhcCccCCcc
Confidence 7788888766666655544556678889887644
No 2
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=17.43 E-value=32 Score=26.48 Aligned_cols=43 Identities=12% Similarity=0.130 Sum_probs=35.1
Q ss_pred ccchheehhheeeehhhhhhhcccccHHHHHHHHHHHhhhhcC
Q 030966 122 FPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLG 164 (168)
Q Consensus 122 lp~llELVGlgYs~WFvyRyLL~~~~R~eL~~ki~~lk~~I~G 164 (168)
+-.+|..+|+-+..++....+-..++|++.+++.++.-++++|
T Consensus 162 l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (204)
T 2amj_A 162 FHKANQFLGMEPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG 204 (204)
T ss_dssp HHHHHHHTTCEECCCEEECSTTTSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCeecceEEEeCCCCcHHHHHHHHHHHHHHHHhhC
Confidence 4678899999999999888777777899999988887666653
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=15.43 E-value=1.6e+02 Score=17.73 Aligned_cols=16 Identities=31% Similarity=0.162 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 030966 95 LVLYGTGALLALWLTT 110 (168)
Q Consensus 95 v~~~g~gaiVal~v~~ 110 (168)
+..+.+|.++++-++.
T Consensus 13 IAGiVvG~v~gv~li~ 28 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLL 28 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHH
Confidence 3333444444444333
No 4
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=14.69 E-value=38 Score=25.71 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=37.8
Q ss_pred CCccchheehhheeeehhhhhhhc--ccccHHHHHHHHHHHhhhhcC
Q 030966 120 PLFPKLMEVVGLGYTLWFSWRYLL--FKKNRDELATKIEELKQQVLG 164 (168)
Q Consensus 120 PLlp~llELVGlgYs~WFvyRyLL--~~~~R~eL~~ki~~lk~~I~G 164 (168)
+++-.+|..+|+-+..++....+- ..+.|++.+++++++-++|+-
T Consensus 144 ~~l~~~l~~~G~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (196)
T 3lcm_A 144 VLKKQILKPCAISPVKLTELTSIEKISDDERQKLLHKVAQITRNILE 190 (196)
T ss_dssp HHHHHTTGGGTCCCEEEEEECSTTTSCHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhcCCceeeEEEEeCcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999888877664 457899999999999988875
No 5
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=14.68 E-value=76 Score=25.35 Aligned_cols=42 Identities=7% Similarity=0.033 Sum_probs=36.5
Q ss_pred cchheehhheeeehhhhhhhcccccHHHHHHHHHHHhhhhcC
Q 030966 123 PKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLG 164 (168)
Q Consensus 123 p~llELVGlgYs~WFvyRyLL~~~~R~eL~~ki~~lk~~I~G 164 (168)
-.+|..+|+-+.-+|+.-.....++|++.++++++.-++++.
T Consensus 176 ~~~l~f~G~~~l~~~~~~g~~~~~~~~~~~~~~~~~L~~~~~ 217 (218)
T 3rpe_A 176 HKANQFLGMKPLPTFMCNDVIKQPDIEGDIARYRQHLAENVN 217 (218)
T ss_dssp HHHHHHTTCEECCCEEECSTTTSCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCEEeceEEEeCCCChHHHHHHHHHHHHHHHHhcc
Confidence 678999999999999988888889999999999887776654
No 6
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=13.75 E-value=1.4e+02 Score=22.83 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=56.1
Q ss_pred chhhHHHHHHHHHHHHH-------------HHHHHHHhhcCCCccchheehhheeeehhhhhhhc-ccccHHHHHHHHHH
Q 030966 92 KYSLVLYGTGALLALWL-------------TTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLL-FKKNRDELATKIEE 157 (168)
Q Consensus 92 K~~v~~~g~gaiVal~v-------------~~aVl~AId~IPLlp~llELVGlgYs~WFvyRyLL-~~~~R~eL~~ki~~ 157 (168)
+.+++=-|+--++..|+ =..++.++..+|+=..-|.=-|||-++-|.+++=- ..++|+-.-.-|+.
T Consensus 54 ~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~ 133 (145)
T 2xpp_A 54 QESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQK 133 (145)
T ss_dssp HHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHH
Confidence 45555566666777775 47899999999988888888899999999887644 45667666666777
Q ss_pred HhhhhcCCCC
Q 030966 158 LKQQVLGSND 167 (168)
Q Consensus 158 lk~~I~G~~~ 167 (168)
..+-|+|.+|
T Consensus 134 WsRpi~~~s~ 143 (145)
T 2xpp_A 134 WTNEVFKPEG 143 (145)
T ss_dssp HHHHHTC---
T ss_pred HHHHHhCCCC
Confidence 7788888665
No 7
>2x43_S Sherp; membrane protein; NMR {Leishmania major}
Probab=13.75 E-value=1.2e+02 Score=21.00 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=18.2
Q ss_pred ccHHHHHHHHHHHhhhhcCCCC
Q 030966 146 KNRDELATKIEELKQQVLGSND 167 (168)
Q Consensus 146 ~~R~eL~~ki~~lk~~I~G~~~ 167 (168)
+-|+...++++++|.+|.|..|
T Consensus 37 elkD~~~~~~E~iKDKisgGsd 58 (67)
T 2x43_S 37 EVRDAVSSTVESIKDKLSGGSS 58 (67)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCC
T ss_pred HHHHHHHhHHHHHHHHhccCcc
Confidence 4577888999999999999765
No 8
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=13.39 E-value=76 Score=21.99 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=19.7
Q ss_pred eehhhhhhhcccccHHHHHHHHHHHhhh
Q 030966 134 TLWFSWRYLLFKKNRDELATKIEELKQQ 161 (168)
Q Consensus 134 s~WFvyRyLL~~~~R~eL~~ki~~lk~~ 161 (168)
..+++||.++.-.+|+|...-=++.++.
T Consensus 27 lllliwk~~~~i~DrrE~~kFEkE~~~~ 54 (79)
T 2knc_B 27 AALLIWKLLITIHDRKEFAKFEEERARA 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578899999999999965544444443
No 9
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=12.24 E-value=2.6e+02 Score=17.89 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=18.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhcCCCccchheehh
Q 030966 92 KYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVG 130 (168)
Q Consensus 92 K~~v~~~g~gaiVal~v~~aVl~AId~IPLlp~llELVG 130 (168)
+..+.-+.+..++...+.+..+..+|.+ +..++.++|
T Consensus 24 r~e~~~~t~vViv~v~i~~~~~~~vD~~--~~~~~~~ig 60 (60)
T 2zjs_E 24 REQVVEGTQAILLFTLAFMVILGLYDTV--FRFLIGLLR 60 (60)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHT--TTTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 3444455555555555556666666653 444455444
No 10
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=11.77 E-value=1.2e+02 Score=26.53 Aligned_cols=35 Identities=23% Similarity=0.472 Sum_probs=24.0
Q ss_pred eeeehhhhh--hhcccc-cHHHHHHHHHHHhhhhcCCC
Q 030966 132 GYTLWFSWR--YLLFKK-NRDELATKIEELKQQVLGSN 166 (168)
Q Consensus 132 gYs~WFvyR--yLL~~~-~R~eL~~ki~~lk~~I~G~~ 166 (168)
|+.+|++|| ||.+-. -|..+.--++=++..++|++
T Consensus 460 G~~a~~~w~~~yl~~l~~~r~r~~v~~~W~~~~~fgRd 497 (502)
T 4g6h_A 460 GLMTFYLWRILYLSMILSARSRLKVFFDWIKLAFFKRD 497 (502)
T ss_dssp EHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHSCCC
T ss_pred cHHHHHHHHHHHHHHccchhhhHHHHHHHHHHHhCCCC
Confidence 677788888 554432 35666666677788888874
Done!