Query 030967
Match_columns 168
No_of_seqs 109 out of 325
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 11:17:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eqt_A ATP-dependent RNA helic 94.8 0.012 4.3E-07 46.4 2.3 91 12-106 12-106 (145)
2 3ga3_A Interferon-induced heli 93.1 0.052 1.8E-06 42.3 2.7 87 12-102 11-99 (133)
3 3e0o_A Peptide methionine sulf 92.1 0.06 2E-06 42.5 1.9 65 12-84 41-105 (144)
4 3hcg_A Peptide methionine sulf 92.0 0.087 3E-06 41.6 2.8 67 12-85 42-108 (146)
5 2kv1_A Methionine-R-sulfoxide 91.3 0.093 3.2E-06 40.5 2.2 64 12-83 19-82 (124)
6 3cxk_A Methionine-R-sulfoxide 90.7 0.083 2.8E-06 42.5 1.5 66 12-84 72-137 (164)
7 2kao_A Methionine-R-sulfoxide 90.6 0.12 4E-06 40.0 2.2 64 12-83 19-82 (124)
8 2qfd_A Probable ATP-dependent 90.6 0.19 6.6E-06 39.5 3.5 79 12-102 26-116 (145)
9 3mao_A Methionine-R-sulfoxide 90.5 0.074 2.5E-06 40.0 0.9 64 12-83 12-75 (105)
10 3lrr_A Probable ATP-dependent 88.5 0.23 8E-06 37.8 2.4 87 12-102 4-94 (121)
11 2k8d_A Peptide methionine sulf 88.4 0.11 3.6E-06 41.4 0.4 67 12-85 60-126 (151)
12 4a2v_A RIG-I, retinoic acid in 86.2 0.21 7.1E-06 38.7 0.9 87 12-102 6-97 (131)
13 3hcj_A MSRB, peptide methionin 84.4 0.15 5.1E-06 40.7 -0.6 66 12-84 49-114 (154)
14 2l1u_A MSRB2, methionine-R-sul 84.0 0.23 7.9E-06 39.1 0.3 65 12-84 36-108 (143)
15 3e0m_A Peptide methionine sulf 83.5 0.4 1.4E-05 41.9 1.6 66 12-84 208-273 (313)
16 4gl2_A Interferon-induced heli 54.0 4.1 0.00014 36.1 1.2 90 8-102 580-673 (699)
17 2ykg_A Probable ATP-dependent 50.2 9.9 0.00034 33.6 3.0 87 12-102 577-667 (696)
18 4a2w_A RIG-I, retinoic acid in 45.1 4.5 0.00015 38.5 0.0 87 12-102 811-902 (936)
19 1x6m_A GFA, glutathione-depend 34.6 54 0.0018 25.6 4.8 19 66-84 95-113 (196)
20 2lvu_A Zinc finger and BTB dom 37.6 10 0.00034 18.4 0.0 18 13-30 2-19 (26)
21 2m0e_A Zinc finger and BTB dom 27.2 14 0.00047 17.8 0.1 18 13-30 2-19 (29)
22 1rik_A E6APC1 peptide; E6-bind 25.4 15 0.00052 17.9 0.1 17 13-29 2-18 (29)
23 2lvr_A Zinc finger and BTB dom 29.9 16 0.00056 17.9 0.0 19 12-30 2-20 (30)
24 2lvt_A Zinc finger and BTB dom 28.3 18 0.00062 17.8 0.0 18 13-30 2-19 (29)
25 1nyp_A Pinch protein; LIM doma 22.2 25 0.00086 21.9 0.6 13 13-25 31-43 (66)
26 2kvh_A Zinc finger and BTB dom 21.9 13 0.00045 18.2 -0.7 18 12-29 2-19 (27)
27 1x61_A Thyroid receptor intera 21.7 34 0.0012 21.6 1.2 12 13-24 33-44 (72)
28 3fac_A Putative uncharacterize 21.6 68 0.0023 22.6 3.0 18 66-83 64-81 (118)
29 2kvf_A Zinc finger and BTB dom 20.6 14 0.00048 18.0 -0.7 18 12-29 2-19 (28)
30 2iyb_E Testin, TESS, TES; LIM 20.5 24 0.00082 22.2 0.3 11 14-24 33-43 (65)
31 1klr_A Zinc finger Y-chromosom 20.3 16 0.00054 17.7 -0.5 18 13-30 2-19 (30)
No 1
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=94.81 E-value=0.012 Score=46.36 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=57.7
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCC----CceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEEEec
Q 030967 12 RSYRCKFCRTHLALPEDLVSRAFHCRR----GKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAR 87 (168)
Q Consensus 12 ~~y~C~~C~thLA~~~eLISk~F~G~~----GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe~A~ 87 (168)
-.+.|++|.+.++..+||-.-. +.+ +++ |...+.+..++..-.....+...-..|.|.+|++.+|-....--
T Consensus 12 vkllCrkC~~~~C~g~DIr~ie--~~HhVnv~p~--F~~~y~~~~~~~~~~k~f~d~~~~g~I~C~~Cgq~WG~~m~yk~ 87 (145)
T 3eqt_A 12 VQLLCINCMVAVGHGSDLRKVE--GTHHVNVNPN--FSNYYNVSRDPVVINKVFKDWKPGGVISCRNCGEVWGLQMIYKS 87 (145)
T ss_dssp CEEEETTTCCEEEEGGGEEEET--TTEEEECCGG--GGGGEEEEEEECCCSSCCSSEEEEEEEEETTTCCEEEEEEEETT
T ss_pred eEEECCCCCeeEEeccceEEec--cceEEeeChh--heeeEEeccCCCCCCcccccccCCcEEEchhhChhhHhhEEecc
Confidence 5699999999999999985431 111 111 11223332222111111345567788999999999998776655
Q ss_pred ccCcceecCeEEEEeccee
Q 030967 88 EKSQKYKEGKFVLERYMRY 106 (168)
Q Consensus 88 E~SQKYKEGKfILE~~~i~ 106 (168)
-+=.-.|.-.|++|...-.
T Consensus 88 ~~LP~LkIksFVve~~~g~ 106 (145)
T 3eqt_A 88 VKLPVLKVRSMLLETPQGR 106 (145)
T ss_dssp EEEEEECGGGEEEEETTEE
T ss_pred ccCceEeEEEEEEEcCCCc
Confidence 5567788889998775443
No 2
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=93.07 E-value=0.052 Score=42.26 Aligned_cols=87 Identities=18% Similarity=0.239 Sum_probs=56.4
Q ss_pred ceEEecCCCCccCCCCCeeeee--eccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEEEeccc
Q 030967 12 RSYRCKFCRTHLALPEDLVSRA--FHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREK 89 (168)
Q Consensus 12 ~~y~C~~C~thLA~~~eLISk~--F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe~A~E~ 89 (168)
-.+.|++|.+.++..+||-.-. -.=.-+++ |...+.+..-++..+. ..+...-..|.|. |++.+|-....---+
T Consensus 11 vkllCrkC~~~~C~g~DIR~ie~~HhVnv~p~--F~~~y~~~~~~~~~k~-f~d~~~~g~I~C~-Cgq~WG~~m~yk~~~ 86 (133)
T 3ga3_A 11 ITFLCKNCSVLACSGEDIHVIEKMHHVNMTPE--FKELYIVRENKALQKK-CADYQINGEIICK-CGQAWGTMMVHKGLD 86 (133)
T ss_dssp EEEEETTTCCEEEEGGGCEEETTTEEECCCTG--GGGSEEEECCTTTCEE-CSSCEEEEEEEET-TSCEEEEEEEETTEE
T ss_pred EEEEccCCCeeEEeccceEEeccceEEeeChh--heeeEEecCCCCccch-hccccCCceEEEe-cCChhhhhEEecccc
Confidence 4589999999999999975431 11111111 2234444422222233 4667888999999 999988877655445
Q ss_pred CcceecCeEEEEe
Q 030967 90 SQKYKEGKFVLER 102 (168)
Q Consensus 90 SQKYKEGKfILE~ 102 (168)
=.-.|.-.|++|.
T Consensus 87 LP~LkIksFVve~ 99 (133)
T 3ga3_A 87 LPCLKIRNFVVVF 99 (133)
T ss_dssp EEEECGGGEEEEE
T ss_pred CceEEEEEEEEEc
Confidence 6677888888875
No 3
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=92.06 E-value=0.06 Score=42.52 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=41.7
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEE
Q 030967 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYE 84 (168)
Q Consensus 12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe 84 (168)
-+|.|+.|+++|=.+++ .|....|=.-.+..+-+ .+...+|+. -|+.. ..|.|.+|+.+||--..
T Consensus 41 G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~pi~~-~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~ 105 (144)
T 3e0o_A 41 GLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEE-EVEEKLDTS--HGMIR-TEVRSRTADSHLGHVFN 105 (144)
T ss_dssp EEEEETTTCCEEEETTT----BCCCTTSSCEESCCSTT-TEEEEEECC--TTSCE-EEEEETTTCCEEEEEES
T ss_pred EEEEeCCCCcccccCcc----cccCCCCCcccCchhcc-ceEEeecCC--CCceE-EEEEcCCCCCccCCccC
Confidence 78999999999877653 45555665443444433 333334432 24432 46899999999998654
No 4
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=91.99 E-value=0.087 Score=41.63 Aligned_cols=67 Identities=9% Similarity=0.068 Sum_probs=41.6
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEEE
Q 030967 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYES 85 (168)
Q Consensus 12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe~ 85 (168)
-+|.|+.|+++|=+++ ..|....|=.-.+..+-.-.+...+|+.+ |+. =..|.|.+|+.+||--...
T Consensus 42 G~Y~C~~Cg~pLF~S~----~KFdSg~GWPSF~~pi~~~~v~~~~D~s~--gm~-RtEV~C~~Cg~HLGHVF~D 108 (146)
T 3hcg_A 42 GIYVDVVSGEPLFSSA----DKYDSGCGWPSFTRPIDAKSVTEHDDFSY--NMR-RTEVRSHAADSHLGHVFPD 108 (146)
T ss_dssp EEEEETTTCCEEEEGG----GEECCSSSSCEESSCSSGGGEEEEEEEET--TEE-EEEEEETTTCCEEEEEESC
T ss_pred EEEEecCCCcccccCc----ccccCCCCChhhccccCCCceEEeecCCC--CcE-EEEEEeCCCCCccCceeCC
Confidence 7899999999986665 34665666544444332211222334321 333 3578999999999986543
No 5
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=91.32 E-value=0.093 Score=40.52 Aligned_cols=64 Identities=16% Similarity=0.289 Sum_probs=38.0
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEE
Q 030967 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKY 83 (168)
Q Consensus 12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKY 83 (168)
-+|.|+.|.++|=.+++= |....|=.-.++.+-.-.+-..+++ .|.. ...|.|++|+.+||=-.
T Consensus 19 G~Y~C~~Cg~pLF~S~~K----fdSg~GWPSF~~~i~~~~v~~~~d~---~~~~-r~Ev~C~~Cg~HLGHVF 82 (124)
T 2kv1_A 19 GVYVCAKCSYELFSSHSK----YAHSSPWPAFTETIHPDSVTKCPEK---NRPE-ALKVSCGKCGNGLGHEF 82 (124)
T ss_dssp EEEEETTTCCBCCCTTSC----CCCCSSSCCBSCCCCCSSCEEEECS---SSTT-CEEEECTTTTCCCEEEC
T ss_pred EEEEecCCCCcccccCCc----ccCCCCCceeecccccceEEEEecc---CCce-EEEEEEecCCCccCCcc
Confidence 689999999999887653 5555554332333211111112222 1221 35799999999999743
No 6
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=90.69 E-value=0.083 Score=42.51 Aligned_cols=66 Identities=24% Similarity=0.467 Sum_probs=41.3
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEE
Q 030967 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYE 84 (168)
Q Consensus 12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe 84 (168)
-+|.|+.|+++|=.+++ .|....|=.-.+..+-+-.+...+|.. -|+ .-..|.|..|+.+||=-..
T Consensus 72 GiY~C~~Cg~pLF~S~~----KFdSGcGWPSF~~pi~~~~V~~~~D~s--~gm-~RtEV~C~~Cg~HLGHVF~ 137 (164)
T 3cxk_A 72 GIYHCVVCGTALFESGA----KYHSGCGWPSYFKPIDGEVIDEKMDYT--HGM-TRVEVRCNQCGAHLGHVFE 137 (164)
T ss_dssp EEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSTTSEEEEEECG--GGC-CEEEEEETTTCCEEEEEES
T ss_pred eEEEccCCCccccCCch----hccCCCCCcccCcccCCCceEEeECCC--CCc-EEEEEEeCCCCCccCcccC
Confidence 78999999999876653 465555654434443221222333332 143 2456899999999998553
No 7
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=90.64 E-value=0.12 Score=39.98 Aligned_cols=64 Identities=16% Similarity=0.282 Sum_probs=38.3
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEE
Q 030967 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKY 83 (168)
Q Consensus 12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKY 83 (168)
-+|.|+.|.++|=++++ .|....|=.-.++.+-.-.+...+|.. + +.-..|.|.+|+.+||=-.
T Consensus 19 GiY~C~~Cg~pLF~S~~----KFdSG~GWPSF~~pi~~~~v~~~~D~~---~-~~RtEV~C~~Cg~HLGHVF 82 (124)
T 2kao_A 19 GVYVCAKCSYELFSSHS----KYAHSSPWPAFTETIHPDSVTKCPEKN---R-PEALKVSCGKCGNGLGHEF 82 (124)
T ss_dssp CEEEESSSCCCCCCTTT----SCCCCCSSCCBSCCCCCSSCEEEECSS---C-TTCEEEECTTTTCCCEEEC
T ss_pred EEEEeCCCCCccccCcc----cccCCCCChhhCccCCccceEEEecCC---C-CCEEEEEeCCCCCcCCccC
Confidence 78999999999988774 354444543333333211111112211 1 1236899999999999755
No 8
>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A
Probab=90.59 E-value=0.19 Score=39.53 Aligned_cols=79 Identities=20% Similarity=0.351 Sum_probs=54.0
Q ss_pred ceEEecCCCCccCCCCCee----------eeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeec--cCCCce
Q 030967 12 RSYRCKFCRTHLALPEDLV----------SRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIV 79 (168)
Q Consensus 12 ~~y~C~~C~thLA~~~eLI----------Sk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~--~C~t~L 79 (168)
-.+.|++|.+.+++.+||- .+.|. ..+.+..-+. ++ ..-+..+-..|+|. +|++.+
T Consensus 26 v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~F~----------~~y~v~~~~~-~k-~f~d~~~~g~I~C~~~~Cg~~W 93 (145)
T 2qfd_A 26 KKLLCRKCKALACYTADVRVIEECHYTVLGDAFK----------ECFVSRPHPK-PK-QFSSFEKRAKIFCARQNCSHDW 93 (145)
T ss_dssp CEEEETTTCCEEEEGGGEEEETTTEEEECSTTGG----------GTEEEEECSS-CC-CCSSEEEEEEEEECSTTTCCEE
T ss_pred eEEEccCCCeeEEcccceeEecCCcEEecCcCce----------eeEEEcCCcc-cc-hhhceeCCceEEeCCcccCcch
Confidence 4599999999999999983 33443 2233331111 11 24455678899999 999999
Q ss_pred eeEEEEecccCcceecCeEEEEe
Q 030967 80 GWKYESAREKSQKYKEGKFVLER 102 (168)
Q Consensus 80 GWKYe~A~E~SQKYKEGKfILE~ 102 (168)
|-....---+-.-.|.-.|+||.
T Consensus 94 G~~m~yk~~~lP~LkIksFVv~~ 116 (145)
T 2qfd_A 94 GIHVKYKTFEIPVIKIESFVVED 116 (145)
T ss_dssp EEEEEETTEEEEEECGGGEEEEC
T ss_pred hceEEEccccCceEEEEEEEEEe
Confidence 88765544446677888888885
No 9
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=90.47 E-value=0.074 Score=39.97 Aligned_cols=64 Identities=16% Similarity=0.292 Sum_probs=38.8
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEE
Q 030967 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKY 83 (168)
Q Consensus 12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKY 83 (168)
-+|.|+.|.++|=.++ ..|....|=.-.+..+-.-.+...+|. .++ .-..|.|.+|+.+||--.
T Consensus 12 G~Y~C~~Cg~pLF~S~----~KFdSg~GWPSF~~pi~~~~v~~~~D~---~~~-~RtEV~C~~C~~HLGHVF 75 (105)
T 3mao_A 12 GVYVCAKCGYELFSSR----SKYAHSSPWPAFTETIHADSVAKRPEH---NRS-EALKVSCGKCGNGLGHEF 75 (105)
T ss_dssp EEEEETTTCCEEEEGG----GEECCSSSSCEESCCSSTTSEEEEECT---TST-TEEEEEETTTCCEEEEEE
T ss_pred EEEEcCCCCCccccCC----cccCCCCCChhhccccCCCceEEEecC---CCC-CEEEEEeCCCCCccCccc
Confidence 7899999999986655 346555565443443321111111221 121 246899999999999855
No 10
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Probab=88.50 E-value=0.23 Score=37.84 Aligned_cols=87 Identities=20% Similarity=0.304 Sum_probs=55.8
Q ss_pred ceEEecCCCCccCCCCCeeeee--eccCCCceEEeceeeecccCccceeEeeeecEEEeeeeec--cCCCceeeEEEEec
Q 030967 12 RSYRCKFCRTHLALPEDLVSRA--FHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIVGWKYESAR 87 (168)
Q Consensus 12 ~~y~C~~C~thLA~~~eLISk~--F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~--~C~t~LGWKYe~A~ 87 (168)
..+.|++|.+.+++.+||-.-. -+=.-+++ |...+.+...+. .+. .-+.+.-..|.|. +|++.+|-....--
T Consensus 4 ~~llC~kC~~~~C~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk~ 79 (121)
T 3lrr_A 4 KKLLCRKCKALACYTADVRVIEESHYTVLGDA--FKECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHDWGIHVKYKT 79 (121)
T ss_dssp EEEEETTTCCEEEEGGGEEEETTTEEEECSHH--HHTTEEEEECSS-CCE-ETTEEEEEEEEECSTTTCCEEEEEEEETT
T ss_pred EEEECCCCCeEEEeccceEEeecceEEeeChh--heeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhheEEecc
Confidence 4589999999999999974331 11001111 112333322222 222 3466788899999 99999998776655
Q ss_pred ccCcceecCeEEEEe
Q 030967 88 EKSQKYKEGKFVLER 102 (168)
Q Consensus 88 E~SQKYKEGKfILE~ 102 (168)
-+=.-.|.-.|++|.
T Consensus 80 ~~LP~LkI~sfvve~ 94 (121)
T 3lrr_A 80 FEIPVIKIESFVVED 94 (121)
T ss_dssp EEEEEECGGGEEEEE
T ss_pred ccCceEEEEEEEEEe
Confidence 556778888888887
No 11
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=88.38 E-value=0.11 Score=41.39 Aligned_cols=67 Identities=24% Similarity=0.548 Sum_probs=41.6
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEEE
Q 030967 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYES 85 (168)
Q Consensus 12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe~ 85 (168)
-+|.|+.|+++|=++++ .|....|=.-.+..+-.-.+...+|+.+ |+. =..|.|..|+.+||--...
T Consensus 60 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~V~~~~D~s~--gm~-RtEV~C~~Cg~HLGHVF~D 126 (151)
T 2k8d_A 60 GIYRCICCGTDLFDSET----KFDSGTGWPSFYDVVSEHNIKLREDRSL--GMV-RCEVLCARCDAHLGHVFDD 126 (151)
T ss_dssp SEEEETTTTEEEEEGGG----SCCSTTCCSEESCCSCTTSEECCCCBTT--SSC-EEEEEETTEEEEEEEEEEC
T ss_pred EEEEecCCCCcccCCcc----cccCCCCCcccCcccCCCceEEeeCCCC--Cce-EEEEEeCCCCCcCCcccCC
Confidence 78999999999876653 4655566544344433212222334321 333 2468999999999986643
No 12
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Probab=86.16 E-value=0.21 Score=38.70 Aligned_cols=87 Identities=17% Similarity=0.292 Sum_probs=52.3
Q ss_pred ceEEecCCCCccCCCCCeeeee--eccCCCceEEeceeeecccCccceeEeeeecEEEeeeeec--cCCCceeeEEEEec
Q 030967 12 RSYRCKFCRTHLALPEDLVSRA--FHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIVGWKYESAR 87 (168)
Q Consensus 12 ~~y~C~~C~thLA~~~eLISk~--F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~--~C~t~LGWKYe~A~ 87 (168)
..+.|++|.+.+++.+||-.-. -+=.-+++ |...+.+...+. .+. .-+.+.-..|.|. +|++.+|-....--
T Consensus 6 ~kllCrkC~~~vC~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk~ 81 (131)
T 4a2v_A 6 KNLLCGKCKAYACSTDDIRIIKDSHHIVLGEA--FKERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKYLT 81 (131)
T ss_dssp CEEEETTTCCEEEEGGGEEEETTTEEEECSSG--GGGGEEEEECCC-CCC-TTSEEEEEEEEESCTTTCCEEEEEEEETT
T ss_pred eEEEccCCCeeEEeccceEEeecceEEeeChh--heeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhhhEeecC
Confidence 5689999999999999974331 10000111 112223311111 122 2456678889999 99999887665433
Q ss_pred cc-CcceecCeEEEEe
Q 030967 88 EK-SQKYKEGKFVLER 102 (168)
Q Consensus 88 E~-SQKYKEGKfILE~ 102 (168)
-+ =.-.|.-.|++|.
T Consensus 82 ~~~LP~LkIksFVve~ 97 (131)
T 4a2v_A 82 FDNLPVIKIKSFVMES 97 (131)
T ss_dssp EEEEEEECGGGEEECC
T ss_pred cccCceEeEEEEEEEe
Confidence 33 4567888888876
No 13
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=84.42 E-value=0.15 Score=40.68 Aligned_cols=66 Identities=21% Similarity=0.432 Sum_probs=38.0
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEE
Q 030967 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYE 84 (168)
Q Consensus 12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe 84 (168)
-+|.|+.|+++|=.+++ .|....|=.-.+..+-.-.+...+|.. -|+. =..|.|.+|+.+||--..
T Consensus 49 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~ 114 (154)
T 3hcj_A 49 GVYTCRLCGLPLFRSNA----KFDSGTGWPSFFAPYDPAHVREIRDTS--YGMI-RTEIVCARCDSHLGHVFP 114 (154)
T ss_dssp EEEEETTTCCEEEEECT----TCCCCTTSSTTEEESCGGGEEEECCTT--TTTS-CEEEEETTTCCEEEEEES
T ss_pred EEEEccCCCCccccCcc----cccCCCCCcccccccCccceEEeecCC--CCce-EEEEEeCCCCCccCCccC
Confidence 78999999999876653 355445542223322111111122221 1332 257899999999998554
No 14
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=84.02 E-value=0.23 Score=39.09 Aligned_cols=65 Identities=18% Similarity=0.368 Sum_probs=38.3
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecc--------cCccceeEeeeecEEEeeeeeccCCCceeeEE
Q 030967 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNIT--------VGASEERLMLSGMHTVADIFCCSCGQIVGWKY 83 (168)
Q Consensus 12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~--------~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKY 83 (168)
-+|.|+.|+++|=++++ .|....|=.- |.+.+++. +...+|+. -|+. =..|.|..|+.+||=-.
T Consensus 36 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPS-F~~pi~~~~~~~~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF 107 (143)
T 2l1u_A 36 GMYHCVCCDSPLFSSEK----KYCSGTGWPS-FSEAYGSKGSDESHTGILRRLDTS--LGCP-RMEVVCKQCEAHLGHVF 107 (143)
T ss_dssp EEEEESSSSCEEEEGGG----BCTTTTCCSB-BSSCCSCCTTHHHHTCEEEEEECT--TSSC-EEEEEESSSCCCCEEEE
T ss_pred eEEEeCCCCCeeecCcc----cccCCCCChh-hchhhccccccCCCCceEEeeccc--CCce-EEEEEECCCCCcCCccc
Confidence 78999999999866643 4554444432 23333211 11122221 1333 34689999999999866
Q ss_pred E
Q 030967 84 E 84 (168)
Q Consensus 84 e 84 (168)
.
T Consensus 108 ~ 108 (143)
T 2l1u_A 108 P 108 (143)
T ss_dssp C
T ss_pred C
Confidence 4
No 15
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=83.49 E-value=0.4 Score=41.85 Aligned_cols=66 Identities=12% Similarity=0.055 Sum_probs=40.8
Q ss_pred ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEE
Q 030967 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYE 84 (168)
Q Consensus 12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe 84 (168)
-+|.|+.|+++|=+++ ..|....|=.-.+..+-.-.+...+|+.+ |+. =..|.|.+|+.+||--..
T Consensus 208 G~Y~c~~cg~pLF~S~----~KfdSg~GWPSF~~~i~~~~v~~~~D~s~--gm~-RtEv~c~~c~~HLGHVF~ 273 (313)
T 3e0m_A 208 GIYVDITTGEPLFFAK----DKFASGCGWPSFSRPLSKELIHYYKDLSH--GME-RIEVRSRSGSAHLGHVFT 273 (313)
T ss_dssp EEEEETTTCCEEEEGG----GBCCCCSSSCEESSCSSGGGEEEEEECCT--TCC-EEEEEESSSCCEEEEEES
T ss_pred eEEEecCCCccccCCC----ccccCCCCCcccCcccCCCceEEeecCCC--CcE-EEEEECCCCCCccCcccC
Confidence 7899999999986654 34665566544344332111222233321 443 357899999999998554
No 16
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=54.00 E-value=4.1 Score=36.11 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=44.7
Q ss_pred ecCC-ceEEecCCCCccCCCCCeeee-ee-ccCCCceEEeceeeecccCcc-ceeEeeeecEEEeeeeeccCCCceeeEE
Q 030967 8 ELDG-RSYRCKFCRTHLALPEDLVSR-AF-HCRRGKAYLFNSAVNITVGAS-EERLMLSGMHTVADIFCCSCGQIVGWKY 83 (168)
Q Consensus 8 yL~g-~~y~C~~C~thLA~~~eLISk-~F-~G~~GrAyLF~~vvNV~~G~~-e~r~m~TG~H~V~DI~C~~C~t~LGWKY 83 (168)
|... ....|.+|.+.++..+||-.- +- +=.-.++ |.....+. .+. .++ ..-+......|+|. |++.+|-.+
T Consensus 580 ~~~~~~~~~c~~c~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~-~~~~~~~~~~~~c~-~~~~~g~~~ 654 (699)
T 4gl2_A 580 NNPSLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPE--FKELYIVR-ENKTLQK-KCADYQINGEIICK-CGQAWGTMM 654 (699)
T ss_dssp --CCSEEEEESSSCCEEEEGGGCEEETTTEEECCCHH--HHHHCEEC-----------------CEEECS-SSCEEEEEC
T ss_pred cCcceeEEECCCCCcEEEehhheeeeccCceEeeCcc--hhhheeec-CCCccch-hhhccccCCcEEee-cCchhhHHe
Confidence 3444 457899999999999987431 10 0000111 12333332 222 122 34566778889999 999988766
Q ss_pred EEecccCcceecCeEEEEe
Q 030967 84 ESAREKSQKYKEGKFVLER 102 (168)
Q Consensus 84 e~A~E~SQKYKEGKfILE~ 102 (168)
..---+=.-.|.-.|++|.
T Consensus 655 ~~~~~~~p~~~~~~~~~~~ 673 (699)
T 4gl2_A 655 VHKGLDLPCLKIRNFVVVF 673 (699)
T ss_dssp CCC---CEEECGGGEEEEE
T ss_pred eEcccccceeEEEEEEEEc
Confidence 5444445566777777766
No 17
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=50.17 E-value=9.9 Score=33.62 Aligned_cols=87 Identities=20% Similarity=0.343 Sum_probs=51.8
Q ss_pred ceEEecCCCCccCCCCCe--eeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeec--cCCCceeeEEEEec
Q 030967 12 RSYRCKFCRTHLALPEDL--VSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIVGWKYESAR 87 (168)
Q Consensus 12 ~~y~C~~C~thLA~~~eL--ISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~--~C~t~LGWKYe~A~ 87 (168)
....|.+|...++..+++ +..+.+=.-.++ |..-+.+..- +..+. .........|+|. +|++.+|-.+..-.
T Consensus 577 ~~~~c~~c~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~-~~~~~-~~~~~~~~~~~c~~~~c~~~~g~~~~~~~ 652 (696)
T 2ykg_A 577 KKLLCRKCKALACYTADVRVIEDCHYTVLGDA--FKECFVSRPH-PKPKQ-FSSFEKRAKIFCARQNCSHDWGIHVKYKT 652 (696)
T ss_dssp EEEEESSSCCEEEEGGGEEEETTTEEEECSTT--GGGTEEEEEE-EEEEE-CSSCEEEEEEEESSTTTCCEEEEEEEETT
T ss_pred hhhhccCCCceeeecchhhhhcCCCeeecCHH--hHhHeeeccC-Ccccc-ccccccCCceEeCCCCCCccccceEEEcc
Confidence 457899999999999885 222221111222 1111111111 11222 3345667888999 99999998875444
Q ss_pred ccCcceecCeEEEEe
Q 030967 88 EKSQKYKEGKFVLER 102 (168)
Q Consensus 88 E~SQKYKEGKfILE~ 102 (168)
-+=..+|...|++|.
T Consensus 653 ~~lp~~~~~~~~~~~ 667 (696)
T 2ykg_A 653 FEIPVIKIESFVVED 667 (696)
T ss_dssp EEEEEECGGGEEEEE
T ss_pred eecceeeeeeEEEEe
Confidence 455666788888874
No 18
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=45.14 E-value=4.5 Score=38.52 Aligned_cols=87 Identities=16% Similarity=0.290 Sum_probs=0.0
Q ss_pred ceEEecCCCCccCCCCCeeee--eeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeec--cCCCceeeEEEEec
Q 030967 12 RSYRCKFCRTHLALPEDLVSR--AFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIVGWKYESAR 87 (168)
Q Consensus 12 ~~y~C~~C~thLA~~~eLISk--~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~--~C~t~LGWKYe~A~ 87 (168)
-.+.|.+|...++..+||-.- +-.=.-+++| ...+++...+. ++. .-..+....|+|. +|+..+|-....--
T Consensus 811 ~~~~c~~c~~~~~~~~d~~~~~~~~~~~~~~~f--~~~~~~~~~~~-~~~-~~~~~~~~~~~c~~~~c~~~~g~~~~~~~ 886 (936)
T 4a2w_A 811 KNLLCGKCKAYACSTDDIRIIKDSHHIVLGEAF--KERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKYLT 886 (936)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEcCCCCceeechhhheeecCCCeEecChhh--hhheeccCCCC-cch-hhcccCCceEEeCccccChHhhhheEecc
Confidence 458999999999999997322 1111112232 22233322222 222 4456677889999 99999887653322
Q ss_pred cc-CcceecCeEEEEe
Q 030967 88 EK-SQKYKEGKFVLER 102 (168)
Q Consensus 88 E~-SQKYKEGKfILE~ 102 (168)
-+ =.-.|.-.|++|.
T Consensus 887 ~~~~p~~~~~~~~~~~ 902 (936)
T 4a2w_A 887 FDNLPVIKIKSFVMES 902 (936)
T ss_dssp ----------------
T ss_pred cccCceeeeeeEEEEe
Confidence 11 3345666688776
No 19
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=34.59 E-value=54 Score=25.60 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=15.1
Q ss_pred EEeeeeeccCCCceeeEEE
Q 030967 66 TVADIFCCSCGQIVGWKYE 84 (168)
Q Consensus 66 ~V~DI~C~~C~t~LGWKYe 84 (168)
.+.--||..|++.|-|..+
T Consensus 95 ~~~r~FC~~CGs~l~~~~~ 113 (196)
T 1x6m_A 95 PIQRHRCRDCGVHMYGRIE 113 (196)
T ss_dssp SEEEEEETTTCCEEEEEEC
T ss_pred CeeeEECCCCCCcCCcccc
Confidence 3566799999999987654
No 20
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=37.64 E-value=10 Score=18.44 Aligned_cols=18 Identities=22% Similarity=0.612 Sum_probs=13.9
Q ss_pred eEEecCCCCccCCCCCee
Q 030967 13 SYRCKFCRTHLALPEDLV 30 (168)
Q Consensus 13 ~y~C~~C~thLA~~~eLI 30 (168)
.|.|..|+.-+...+.|.
T Consensus 2 p~~C~~C~k~f~~~~~l~ 19 (26)
T 2lvu_A 2 PYVCERCGKRFVQSSQLA 19 (26)
Confidence 588999998877776654
No 21
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.19 E-value=14 Score=17.82 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=13.6
Q ss_pred eEEecCCCCccCCCCCee
Q 030967 13 SYRCKFCRTHLALPEDLV 30 (168)
Q Consensus 13 ~y~C~~C~thLA~~~eLI 30 (168)
.|.|..|...+...+.|.
T Consensus 2 ~~~C~~C~~~f~~~~~l~ 19 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGNLK 19 (29)
T ss_dssp CCCCSSCCCCCCTTTHHH
T ss_pred CCcCCCCCcccCCHHHHH
Confidence 578999988877766654
No 22
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=25.39 E-value=15 Score=17.89 Aligned_cols=17 Identities=18% Similarity=0.579 Sum_probs=12.8
Q ss_pred eEEecCCCCccCCCCCe
Q 030967 13 SYRCKFCRTHLALPEDL 29 (168)
Q Consensus 13 ~y~C~~C~thLA~~~eL 29 (168)
.|.|..|...+...+.|
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (29)
T 1rik_A 2 KFACPECPKRFMRSDHL 18 (29)
T ss_dssp CEECSSSSCEESCSHHH
T ss_pred CccCCCCCchhCCHHHH
Confidence 58899998877766554
No 23
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=29.88 E-value=16 Score=17.86 Aligned_cols=19 Identities=32% Similarity=0.730 Sum_probs=14.0
Q ss_pred ceEEecCCCCccCCCCCee
Q 030967 12 RSYRCKFCRTHLALPEDLV 30 (168)
Q Consensus 12 ~~y~C~~C~thLA~~~eLI 30 (168)
+.|.|..|...+...+.|.
T Consensus 2 k~~~C~~C~k~f~~~~~l~ 20 (30)
T 2lvr_A 2 KPYVCIHCQRQFADPGALQ 20 (30)
Confidence 3588999988777666654
No 24
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.26 E-value=18 Score=17.76 Aligned_cols=18 Identities=17% Similarity=0.588 Sum_probs=13.6
Q ss_pred eEEecCCCCccCCCCCee
Q 030967 13 SYRCKFCRTHLALPEDLV 30 (168)
Q Consensus 13 ~y~C~~C~thLA~~~eLI 30 (168)
.|.|..|..-+...+.|.
T Consensus 2 ~~~C~~C~k~f~~~~~l~ 19 (29)
T 2lvt_A 2 PCQCVMCGKAFTQASSLI 19 (29)
Confidence 588999988777766654
No 25
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=22.24 E-value=25 Score=21.90 Aligned_cols=13 Identities=15% Similarity=0.462 Sum_probs=10.0
Q ss_pred eEEecCCCCccCC
Q 030967 13 SYRCKFCRTHLAL 25 (168)
Q Consensus 13 ~y~C~~C~thLA~ 25 (168)
-|.|..|+.+|..
T Consensus 31 CF~C~~C~~~L~~ 43 (66)
T 1nyp_A 31 HFVCAKCEKPFLG 43 (66)
T ss_dssp TCBCTTTCCBCSS
T ss_pred cCEECCCCCCCCC
Confidence 3788888888864
No 26
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.87 E-value=13 Score=18.16 Aligned_cols=18 Identities=11% Similarity=0.464 Sum_probs=12.6
Q ss_pred ceEEecCCCCccCCCCCe
Q 030967 12 RSYRCKFCRTHLALPEDL 29 (168)
Q Consensus 12 ~~y~C~~C~thLA~~~eL 29 (168)
+.|.|..|..-+...+.|
T Consensus 2 k~~~C~~C~k~f~~~~~l 19 (27)
T 2kvh_A 2 KPFSCSLCPQRSRDFSAM 19 (27)
T ss_dssp CCEECSSSSCEESSHHHH
T ss_pred cCccCCCcChhhCCHHHH
Confidence 468999998776655443
No 27
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.75 E-value=34 Score=21.57 Aligned_cols=12 Identities=33% Similarity=0.944 Sum_probs=9.3
Q ss_pred eEEecCCCCccC
Q 030967 13 SYRCKFCRTHLA 24 (168)
Q Consensus 13 ~y~C~~C~thLA 24 (168)
-|.|..|+.+|.
T Consensus 33 CF~C~~C~~~L~ 44 (72)
T 1x61_A 33 CFVCSTCRAQLR 44 (72)
T ss_dssp TCBCSSSCCBCT
T ss_pred CCcccccCCcCC
Confidence 378888888884
No 28
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=21.63 E-value=68 Score=22.61 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=14.3
Q ss_pred EEeeeeeccCCCceeeEE
Q 030967 66 TVADIFCCSCGQIVGWKY 83 (168)
Q Consensus 66 ~V~DI~C~~C~t~LGWKY 83 (168)
.+.--+|..|++.|-|..
T Consensus 64 ~~~r~FC~~CGs~l~~~~ 81 (118)
T 3fac_A 64 TAKHWFCRTCGIYTHHQR 81 (118)
T ss_dssp CSEEEEETTTCCEEEEEC
T ss_pred CEeeEECCCCCccccCcc
Confidence 356679999999998754
No 29
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.56 E-value=14 Score=18.04 Aligned_cols=18 Identities=28% Similarity=0.855 Sum_probs=12.7
Q ss_pred ceEEecCCCCccCCCCCe
Q 030967 12 RSYRCKFCRTHLALPEDL 29 (168)
Q Consensus 12 ~~y~C~~C~thLA~~~eL 29 (168)
+.|.|..|...+...+.|
T Consensus 2 k~~~C~~C~k~f~~~~~l 19 (28)
T 2kvf_A 2 RPYSCSVCGKRFSLKHQM 19 (28)
T ss_dssp CSEECSSSCCEESCHHHH
T ss_pred cCccCCCCCcccCCHHHH
Confidence 458999998876665444
No 30
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=20.48 E-value=24 Score=22.21 Aligned_cols=11 Identities=27% Similarity=0.818 Sum_probs=8.7
Q ss_pred EEecCCCCccC
Q 030967 14 YRCKFCRTHLA 24 (168)
Q Consensus 14 y~C~~C~thLA 24 (168)
|.|..|+.+|.
T Consensus 33 F~C~~C~~~L~ 43 (65)
T 2iyb_E 33 FLCSCCSKCLI 43 (65)
T ss_dssp SBCTTTCCBCT
T ss_pred EECCCCCCcCC
Confidence 67888888885
No 31
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=20.30 E-value=16 Score=17.74 Aligned_cols=18 Identities=28% Similarity=0.752 Sum_probs=13.4
Q ss_pred eEEecCCCCccCCCCCee
Q 030967 13 SYRCKFCRTHLALPEDLV 30 (168)
Q Consensus 13 ~y~C~~C~thLA~~~eLI 30 (168)
.|.|..|...+...+.|.
T Consensus 2 ~~~C~~C~k~f~~~~~l~ 19 (30)
T 1klr_A 2 TYQCQYCEFRSADSSNLK 19 (30)
T ss_dssp CCCCSSSSCCCSCSHHHH
T ss_pred CccCCCCCCccCCHHHHH
Confidence 578999988877766554
Done!