BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030969
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23164|CRPM4_ARATH Cold-regulated 413 plasma membrane protein 4 OS=Arabidopsis
thaliana GN=At4g37220 PE=2 SV=2
Length = 202
Score = 102 bits (255), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 6/155 (3%)
Query: 15 LGSSSRARASLQWGGTIAALFLLLMNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFG 74
LG + LQW +I A++LL+++RT ++ M T LLV Y+F + P+V+F+ G FG
Sbjct: 40 LGGVGFGTSVLQWAASIFAIYLLILDRTNWKTKMLTTLLVPYIFFTLPSVIFQFFSGDFG 99
Query: 75 CWVACLAVGANLFYPKTF------PVARFILFVITPAWLANGLREGIAAGVYCLIIGVLV 128
W+A +A+ LF+PK F PVA ++ V++P+ +A LRE V CL+I +
Sbjct: 100 KWIALIAIIVRLFFPKEFPEWLEIPVALILIVVVSPSLIAWTLRESWVGAVICLVIACYL 159
Query: 129 IITEIRGIGGFRNCECNLHSFSYCLGVAFLFFFTV 163
I+ GGF+N + S +G+ L + V
Sbjct: 160 FHEHIKASGGFKNSFTQKNGISNTIGIVALLVYPV 194
>sp|Q9SVL6|CRPM2_ARATH Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis
thaliana GN=COR413PM2 PE=2 SV=1
Length = 203
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 11 TLTELGSSSRARASLQWGGTIAALFLLLMNRTGRRSHMQTNLLVLYLFTSFPTVLFKILR 70
+++LG + L++ + AA++LL+++RT ++ M T+LL+ Y+F S P+V+F L
Sbjct: 37 DVSKLGGLGFGVSFLKFLASFAAIYLLILDRTNWKTKMLTSLLIPYIFLSLPSVIFNFLS 96
Query: 71 GQFGCWVACLAVGANLFYPKTFPV------ARFILFVITPAWLANGLREGIAAGVYCLII 124
G G W+A +AV LF+PK FP + +L V++P +LA+ +R V L I
Sbjct: 97 GDVGKWIAFVAVVLRLFFPKHFPDWLEMPGSLILLLVVSPHFLAHHIRGTWIGTVISLFI 156
Query: 125 GVLVIITEIRGIGGFRNCECNLHSFSYCLGVAFLFFFTV 163
G ++ IR GGFRN S LG+ L + V
Sbjct: 157 GCYLLQEHIRASGGFRNSFTQPRGVSNTLGIILLLVYPV 195
>sp|Q9XIM7|CRPM1_ARATH Cold-regulated 413 plasma membrane protein 1 OS=Arabidopsis
thaliana GN=COR413PM1 PE=1 SV=1
Length = 197
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 15/165 (9%)
Query: 8 QGVTLTELGSSSRARASLQWGGTIAALFLLLMNRTGRRSHMQTNLLVLYLFTSFPTVLFK 67
TLT LG + + L+W +IAA++LL+++RT +++M T+LL+ Y+F S P+++F
Sbjct: 34 HAFTLTGLGFGT---SVLEWVASIAAIYLLVLDRTNWKTNMLTSLLIPYIFFSLPSLIFG 90
Query: 68 ILRGQFGCWVACLAVGANLFYPKTFPVARFILFVITPAWLANGLREGIAAGVY------- 120
I RG+ G W+A +AV LF+PK AR L + L + + AG +
Sbjct: 91 IFRGEIGKWIAFVAVVVQLFFPKH---AREYLELPVALVLLAVVAPNLIAGTFRDSWIGL 147
Query: 121 --CLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAFLFFFTV 163
CL IG ++ IR GGFRN + S +G+ L F V
Sbjct: 148 AICLGIGCYLLQEHIRASGGFRNAFTKANGISNTVGIICLVVFPV 192
>sp|O64834|CRPM3_ARATH Cold-regulated 413 plasma membrane protein 3 OS=Arabidopsis
thaliana GN=At2g23680 PE=2 SV=1
Length = 189
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 10/150 (6%)
Query: 25 LQWGGTIAALFLLLMNRTGRR--SHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAV 82
L+W +I A+FL+++++T + +++ +LL YLF+S P V+F++LR G W+A L V
Sbjct: 31 LRWLASIVAVFLMILDQTKWKYSNNIMASLLAPYLFSSLPIVIFQVLRNGVGKWIALLTV 90
Query: 83 GANLFYPKTF------PVARFILFVITPAWLANGLREGI--AAGVYCLIIGVLVIITEIR 134
LF P F P A +L V+TP+ + R+ + G CL+ +I +
Sbjct: 91 ILRLFLPNHFHESLEIPGATILLIVVTPSDIGAIFRDDLRYTGGDVCLLTSFYLINKHTK 150
Query: 135 GIGGFRNCECNLHSFSYCLGVAFLFFFTVL 164
GG +N +Y + + LF + +L
Sbjct: 151 ACGGIKNSFTQKDKVTYSICLWILFVYPIL 180
>sp|Q94AL8|CRIM1_ARATH Cold-regulated 413 inner membrane protein 1, chloroplastic
OS=Arabidopsis thaliana GN=COR413IM1 PE=1 SV=1
Length = 225
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 24 SLQWGGTIAALFLLLMNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVG 83
SLQW TI+ L L+L TG + L L+ P+ + ++G++G W A LA+
Sbjct: 84 SLQWISTISCLALMLARGTGIHKSVVVPLFALHA----PSSIVAWIKGEYGVWAAFLALI 139
Query: 84 ANLFYPKTFPVA------RFILFVITPAWLAN--GLREG 114
A LF+ TFP +L ++ P + N G +EG
Sbjct: 140 ARLFF--TFPGELELPFIALLLVIVAPYQVMNIRGKQEG 176
>sp|F4I1G5|CRIM2_ARATH Cold-regulated 413 inner membrane protein 2, chloroplastic
OS=Arabidopsis thaliana GN=COR413IM2 PE=1 SV=1
Length = 226
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 24 SLQWGGTIAALFLLLMNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVG 83
+LQW TI+ + L+ TG + + +V P + ++G++G W A LA+
Sbjct: 85 NLQWISTISCVALMFARGTG----IHKSFVVPLFALQAPMGIVSWMKGEYGIWAAFLALL 140
Query: 84 ANLFYPKTFPVARFILFV 101
LF+ +FPV + F+
Sbjct: 141 TRLFF--SFPVELELPFI 156
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.334 0.146 0.474
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,026,090
Number of Sequences: 539616
Number of extensions: 2219122
Number of successful extensions: 6790
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6780
Number of HSP's gapped (non-prelim): 20
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 57 (26.6 bits)