Query 030969
Match_columns 168
No_of_seqs 67 out of 69
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 11:20:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030969.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030969hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f5tx2 d.136.1.5 (X:110-246) 8.3 33 0.0024 24.9 -0.2 20 99-118 26-45 (137)
2 d1o82a_ a.64.2.1 (A:) Bacterio 7.6 1.3E+02 0.0093 19.3 2.5 25 29-53 9-33 (70)
3 d1bboa1 g.37.1.1 (A:1-28) Enha 6.3 1.3E+02 0.0092 16.5 1.7 12 128-139 16-27 (28)
4 d1l7va_ f.22.1.1 (A:) ABC tran 5.6 1.9E+02 0.014 22.3 3.0 15 116-130 305-319 (324)
5 d2jb0b1 d.4.1.1 (B:449-572) DN 4.4 1.2E+02 0.0085 21.5 0.9 13 103-115 28-40 (124)
6 d2gykb1 d.4.1.1 (B:4-133) DNas 4.1 1.3E+02 0.0093 21.5 0.9 15 101-115 29-43 (130)
7 d2noha1 a.96.1.3 (A:136-325) 8 3.5 3E+02 0.022 18.9 2.5 23 72-94 110-132 (190)
8 d1mkaa_ d.38.1.2 (A:) beta-Hyd 3.2 1.5E+02 0.011 20.6 0.5 9 86-94 65-73 (171)
9 d2dk5a1 a.4.5.85 (A:8-85) DNA- 3.1 2.5E+02 0.018 17.9 1.5 12 127-138 16-27 (78)
10 d1v54k_ f.23.5.1 (K:) Mitochon 3.0 4.3E+02 0.031 15.8 2.5 16 116-131 15-30 (49)
No 1
>d2f5tx2 d.136.1.5 (X:110-246) Transcriptional regulator TrmB {Thermococcus litoralis [TaxId: 2265]}
Probab=8.34 E-value=33 Score=24.90 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.0
Q ss_pred hhhcChhHHHhhhcccchhH
Q 030969 99 LFVITPAWLANGLREGIAAG 118 (168)
Q Consensus 99 LivvaP~~~~~~~R~~~~G~ 118 (168)
.+||+|+.+-.++|+++.+.
T Consensus 26 vIvvtP~eFF~~Ire~L~~~ 45 (137)
T d2f5tx2 26 VIVVTPSEFFETIREDLIKT 45 (137)
T ss_dssp EEEEECGGGHHHHHHHHHHH
T ss_pred EEEEchHHHHHHHHHHHHHH
Confidence 46899999999999998765
No 2
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=7.57 E-value=1.3e+02 Score=19.28 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhccCccccchhHHH
Q 030969 29 GTIAALFLLLMNRTGRRSHMQTNLL 53 (168)
Q Consensus 29 asiaAi~LLildrTnwkTni~tslL 53 (168)
+++++.+|=+.+.-||-|.|..-++
T Consensus 9 a~ia~~vlniv~agg~vttivsil~ 33 (70)
T d1o82a_ 9 AAVAGTVLNVVEAGGWVTTIVSILT 33 (70)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhhccCcchhhHHHHHH
Confidence 6889999999999999987765443
No 3
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.26 E-value=1.3e+02 Score=16.47 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=8.8
Q ss_pred HHHHHHHhcCCc
Q 030969 128 VIITEIRGIGGF 139 (168)
Q Consensus 128 Ll~qHir~~GGf 139 (168)
+++.|||..-|-
T Consensus 16 vL~KHIRsHT~~ 27 (28)
T d1bboa1 16 MLKKHIRTHTDV 27 (28)
T ss_dssp HHHHHHHHTSSC
T ss_pred HHHHHHHHhcCC
Confidence 578999876543
No 4
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=5.56 E-value=1.9e+02 Score=22.28 Aligned_cols=15 Identities=13% Similarity=-0.037 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHHHH
Q 030969 116 AAGVYCLIIGVLVII 130 (168)
Q Consensus 116 ~G~vIcL~I~~YLl~ 130 (168)
+|++.+++=+-|+++
T Consensus 305 vGvitaliG~P~fi~ 319 (324)
T d1l7va_ 305 IGVVTATLGAPVFIW 319 (324)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555554
No 5
>d2jb0b1 d.4.1.1 (B:449-572) DNase domain of colicin E7 {Escherichia coli [TaxId: 562]}
Probab=4.40 E-value=1.2e+02 Score=21.51 Aligned_cols=13 Identities=38% Similarity=0.545 Sum_probs=11.1
Q ss_pred ChhHHHhhhcccc
Q 030969 103 TPAWLANGLREGI 115 (168)
Q Consensus 103 aP~~~~~~~R~~~ 115 (168)
-|+|++|.+||.-
T Consensus 28 IP~qIadkLrGr~ 40 (124)
T d2jb0b1 28 VPDRIANKLRDKE 40 (124)
T ss_dssp CBHHHHHHHTTCE
T ss_pred CCHHHHHHhcCCc
Confidence 4899999999974
No 6
>d2gykb1 d.4.1.1 (B:4-133) DNase domain of colicin E9 {Escherichia coli [TaxId: 562]}
Probab=4.10 E-value=1.3e+02 Score=21.46 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=12.3
Q ss_pred hcChhHHHhhhcccc
Q 030969 101 VITPAWLANGLREGI 115 (168)
Q Consensus 101 vvaP~~~~~~~R~~~ 115 (168)
+.-|+|++|.+||.-
T Consensus 29 apIP~qIadkLrGr~ 43 (130)
T d2gykb1 29 APIPDRIADKLRDKE 43 (130)
T ss_dssp EECBHHHHHHHTTCE
T ss_pred CcCCHHHHHHhcCCc
Confidence 446999999999975
No 7
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.47 E-value=3e+02 Score=18.89 Aligned_cols=23 Identities=30% Similarity=0.228 Sum_probs=19.3
Q ss_pred ccchHHHHHHHHhhhccCCCCch
Q 030969 72 QFGCWVACLAVGANLFYPKTFPV 94 (168)
Q Consensus 72 e~G~WiAFlAvv~RLFfp~~fP~ 94 (168)
.+|.|+|=..+..-+=-|.-||.
T Consensus 110 GIG~wTA~~il~~~~~~~d~fpv 132 (190)
T d2noha1 110 GVGTQVADCICLMALDKPQAVPV 132 (190)
T ss_dssp TCCHHHHHHHHHHHSCCTTCCCC
T ss_pred CchHHHHHHHHHHHcCCCCeEee
Confidence 58999999888877777877885
No 8
>d1mkaa_ d.38.1.2 (A:) beta-Hydroxydecanol thiol ester dehydrase {Escherichia coli [TaxId: 562]}
Probab=3.18 E-value=1.5e+02 Score=20.64 Aligned_cols=9 Identities=22% Similarity=0.290 Sum_probs=7.3
Q ss_pred hccCCCCch
Q 030969 86 LFYPKTFPV 94 (168)
Q Consensus 86 LFfp~~fP~ 94 (168)
-||+.|||+
T Consensus 65 wff~gHFp~ 73 (171)
T d1mkaa_ 65 WFFGCHFIG 73 (171)
T ss_dssp GGGGTTTTT
T ss_pred ceecccccC
Confidence 378889997
No 9
>d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.11 E-value=2.5e+02 Score=17.92 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=9.8
Q ss_pred HHHHHHHHhcCC
Q 030969 127 LVIITEIRGIGG 138 (168)
Q Consensus 127 YLl~qHir~~GG 138 (168)
++++++|+.+|.
T Consensus 16 ~lVY~~I~~ag~ 27 (78)
T d2dk5a1 16 KLVYQIIEDAGN 27 (78)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHccc
Confidence 578899999875
No 10
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.98 E-value=4.3e+02 Score=15.75 Aligned_cols=16 Identities=13% Similarity=0.467 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHH
Q 030969 116 AAGVYCLIIGVLVIIT 131 (168)
Q Consensus 116 ~G~vIcL~I~~YLl~q 131 (168)
.|+.+|+++=.|.+-|
T Consensus 15 ~Ga~fc~avW~yv~TQ 30 (49)
T d1v54k_ 15 SGATFCVAVWVYMATQ 30 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhheeee
Confidence 6899999999998766
Done!