Query 030970
Match_columns 168
No_of_seqs 117 out of 753
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 11:21:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_O 50S ribosomal protein L 100.0 5.1E-55 1.8E-59 336.6 12.4 120 49-168 1-122 (122)
2 1whi_A Ribosomal protein L14; 100.0 7.7E-55 2.6E-59 335.6 11.8 120 49-168 1-122 (122)
3 3r8s_K 50S ribosomal protein L 100.0 2.1E-54 7.1E-59 333.2 10.8 119 49-167 1-122 (122)
4 3bbo_M Ribosomal protein L14; 100.0 3.7E-54 1.3E-58 331.5 11.1 119 49-168 1-121 (121)
5 1vq8_K 50S ribosomal protein L 100.0 9.4E-51 3.2E-55 316.5 11.2 118 47-168 9-132 (132)
6 3j21_J 50S ribosomal protein L 100.0 3.7E-50 1.3E-54 315.9 9.8 118 47-168 18-141 (141)
7 3u5e_V L17A, YL32, 60S ribosom 100.0 1.3E-49 4.6E-54 311.5 11.0 118 47-168 14-137 (137)
8 2qqr_A JMJC domain-containing 50.2 38 0.0013 25.2 5.9 42 77-131 4-45 (118)
9 1xe1_A Hypothetical protein PF 37.2 77 0.0026 23.5 5.7 52 49-106 59-113 (116)
10 3h9w_A Diguanylate cyclase wit 33.4 59 0.002 20.6 4.2 29 113-141 70-98 (115)
11 3r87_A Putative uncharacterize 31.0 1.3E+02 0.0043 20.6 6.2 64 76-155 67-131 (135)
12 3ck1_A Putative thioesterase; 30.2 1.1E+02 0.0037 21.1 5.4 64 76-155 69-133 (150)
13 2ftc_K 39S ribosomal protein L 29.9 68 0.0023 23.2 4.2 32 80-114 5-36 (98)
14 2xdp_A Lysine-specific demethy 29.3 30 0.001 26.0 2.3 41 78-131 6-46 (123)
15 2o5u_A Thioesterase; putative 27.7 1.1E+02 0.0036 21.3 5.0 70 76-162 74-145 (148)
16 2egj_A Hypothetical protein AQ 27.6 1.3E+02 0.0045 19.7 5.7 16 76-91 64-79 (128)
17 3f1p_B ARYL hydrocarbon recept 23.6 67 0.0023 20.5 3.1 30 112-141 77-107 (121)
18 3icy_A Sensor protein; sensory 23.0 1.2E+02 0.0042 18.4 4.2 30 112-141 80-109 (118)
19 3f1p_A Endothelial PAS domain- 22.8 62 0.0021 20.5 2.8 30 112-141 73-103 (117)
20 3qr8_A GPV, baseplate assembly 22.7 1.9E+02 0.0064 22.5 6.0 82 47-137 15-116 (211)
21 1v74_A Colicin D; colicin D - 22.4 83 0.0028 23.2 3.6 29 114-142 58-88 (107)
22 3v2d_T 50S ribosomal protein L 22.3 1.2E+02 0.0042 23.4 4.7 35 78-114 21-55 (146)
23 3r8s_P 50S ribosomal protein L 21.6 1.1E+02 0.0037 22.7 4.1 35 78-114 18-52 (114)
24 3d6l_A Putative hydrolase; hot 20.7 2.1E+02 0.007 19.4 5.6 16 76-91 60-75 (137)
25 3hm0_A Probable thioesterase; 20.6 2.3E+02 0.0079 20.6 5.9 63 76-155 102-164 (167)
26 1pyv_A ATP synthase beta chain 20.1 48 0.0016 21.2 1.6 29 3-34 9-37 (54)
No 1
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=100.00 E-value=5.1e-55 Score=336.61 Aligned_cols=120 Identities=57% Similarity=0.858 Sum_probs=117.7
Q ss_pred ceeccceEEEeeCcccceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCceEeec
Q 030970 49 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD 126 (168)
Q Consensus 49 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~~ikFd 126 (168)
|||.+|+|+|+|||||++++||++|++ +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus 1 MIq~~t~L~vaDNSGAk~v~cI~Vlg~~~rr~a~iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk~~rR~dG~~i~Fd 80 (122)
T 3v2d_O 1 MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFD 80 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEEESTTTCCCBCTTCEEEEEEEEECSSSSSCTTCEEEEEEEECSSCEECTTSCEEEES
T ss_pred CCCCCCEEEEeeCCCCcEEEEEEEeCCCCCcccCCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCccCCCCCcEEEcC
Confidence 999999999999999999999999987 679999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970 127 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 168 (168)
Q Consensus 127 dNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~ 168 (168)
|||+||+|++++|+|||||||||+|||+++|+||+|||++++
T Consensus 81 dNa~Vlin~~~~p~GTrI~GpVarElr~~~~~KI~SlA~~v~ 122 (122)
T 3v2d_O 81 DNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPEVL 122 (122)
T ss_dssp SCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHSSCBC
T ss_pred CcEEEEECCCCCEeeeEEEccchHHHhhCCCchhhccccccC
Confidence 999999999999999999999999999999999999999975
No 2
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=100.00 E-value=7.7e-55 Score=335.61 Aligned_cols=120 Identities=52% Similarity=0.793 Sum_probs=117.9
Q ss_pred ceeccceEEEeeCcccceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCceEeec
Q 030970 49 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD 126 (168)
Q Consensus 49 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~~ikFd 126 (168)
|||.+|+|+|+|||||++++||+++++ +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus 1 MIq~~t~l~vaDNSGAk~v~cI~vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd 80 (122)
T 1whi_A 1 MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFD 80 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEECCS
T ss_pred CCCccCEEEEeECCCCcEEEEEEEcCCCcccccccCeEEEEEEEEecCCCccccccEEEEEEEEecCceecCCCCEEEeC
Confidence 999999999999999999999999997 789999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970 127 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 168 (168)
Q Consensus 127 dNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~ 168 (168)
|||+||+|++++|+|||||||||+|||+++|+||+|||++++
T Consensus 81 dNa~Vlin~~g~p~GTrI~GPVarElr~k~~~KI~SlA~~vl 122 (122)
T 1whi_A 81 ENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPEVI 122 (122)
T ss_dssp SCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHCSCBC
T ss_pred CceEEEECCCCCEeeeEEEccchHHHhhcCCcchhhcccccC
Confidence 999999999999999999999999999999999999999985
No 3
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=100.00 E-value=2.1e-54 Score=333.24 Aligned_cols=119 Identities=54% Similarity=0.844 Sum_probs=116.7
Q ss_pred ceeccceEEEeeCcccceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCceEeec
Q 030970 49 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD 126 (168)
Q Consensus 49 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~~ikFd 126 (168)
|||.+|+|+|+|||||++++||++|++ +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus 1 MIq~~t~L~vaDNSGAk~v~cI~Vlgg~~r~~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd 80 (122)
T 3r8s_K 1 MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFD 80 (122)
T ss_dssp CBCTTCEEEECBTTSEEEEEEEEECSSSSCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEEEES
T ss_pred CCCCCCEEEEccCCCCceEEEEEEeCCCCCCcccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCcCCCCCCcEEEcC
Confidence 999999999999999999999999987 678999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCC-CCcceeEEecchhHhhhcCCcchhecccccc
Q 030970 127 DNAVVLVNKA-GEPTGTRVFGPVPHELRRKKHVSILTLAEHL 167 (168)
Q Consensus 127 dNavVLln~k-~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i 167 (168)
|||+||+|++ ++|+|||||||||+|||+++|+||+|||+++
T Consensus 81 dNa~Vlin~~~g~p~GTrI~GpVarElR~~~~~KI~SlA~~v 122 (122)
T 3r8s_K 81 GNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPEV 122 (122)
T ss_dssp SCEEEEEETTTEEESCSCBCSCCCGGGGSGGGHHHHHSSSCC
T ss_pred CceEEEEeCCCCCEeeeEEEccccHHHhHcCCchhhccccCC
Confidence 9999999999 9999999999999999999999999999985
No 4
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3.7e-54 Score=331.45 Aligned_cols=119 Identities=45% Similarity=0.776 Sum_probs=116.8
Q ss_pred ceeccceEEEeeCcccceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCceEeec
Q 030970 49 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD 126 (168)
Q Consensus 49 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~~ikFd 126 (168)
|||.+|+|+|+|||||+.++||+++++ +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus 1 MIq~~t~l~vaDNSGAk~v~cI~Vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd 80 (121)
T 3bbo_M 1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYD 80 (121)
T ss_dssp CCCSSCEEEECSSSSEEEEEEEEECSSSCCCCCCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECSSCEECTTSCEECCS
T ss_pred CCCccCEEEEeeCCCCcEEEEEEEcCCCCccccccCcEEEEEEEEccCCCccccCcEEEEEEEEecCccccCCCCEEEeC
Confidence 999999999999999999999999997 789999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970 127 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 168 (168)
Q Consensus 127 dNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~ 168 (168)
|||+||+|++++|+|||||||||+|||+ +|+||+|||++++
T Consensus 81 dNa~Vlin~~g~p~GTrI~GPVarElr~-~~~KI~SlA~~vl 121 (121)
T 3bbo_M 81 DNAAVIIDQEGNPKGTRIFGAIARELRQ-KFAKIVSLAPEVL 121 (121)
T ss_dssp SCEEEECCTTSSCSSSCCCSCCCGGGTT-TCHHHHHHSSCCC
T ss_pred CceEEEECCCCCEeEeEEEcCcCHHHHh-cchHhhhccchhC
Confidence 9999999999999999999999999999 8999999999985
No 5
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=100.00 E-value=9.4e-51 Score=316.45 Aligned_cols=118 Identities=33% Similarity=0.544 Sum_probs=113.1
Q ss_pred ccceeccceEEEeeCcccceEEEEEeeC--C--ccc--cccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCC
Q 030970 47 RTFIQMRTVLKVVDNSGAKTVMCIQPLK--G--RKV--ARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDG 120 (168)
Q Consensus 47 ~~MIq~~T~L~VaDNSGak~v~cI~vl~--~--~k~--a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG 120 (168)
-.|||.+|+|+|+|||||+.++||++++ + +++ |++||+|++|||++.|+. |||+++|||||||++++|+||
T Consensus 9 ~~mIq~~t~l~vaDNSGAk~v~cI~V~g~~g~~~r~p~a~iGD~IvvsVKk~~p~~---kg~v~~AVIVRtkk~~rR~dG 85 (132)
T 1vq8_K 9 TQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEM---RRQVLEAVVVRQRKPIRRPDG 85 (132)
T ss_dssp CCCEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTS
T ss_pred ccccccCCEEEEeeCCCCcEEEEEEEeCccCcccccCCCccCcEEEEEEEecCCCC---CCcEEEEEEEEcCCCcCcCCC
Confidence 4699999999999999999999999998 4 566 999999999999999987 699999999999999999999
Q ss_pred ceEeecCceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970 121 SEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 168 (168)
Q Consensus 121 ~~ikFddNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~ 168 (168)
++++|||||+||+|++++|+|||||||||+|||+ +|+||+|||++++
T Consensus 86 ~~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~-~~~KI~SlA~~v~ 132 (132)
T 1vq8_K 86 TRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQ-RFGSVASAATMIV 132 (132)
T ss_dssp CEEEESSCEEEEECTTSCBSSSCBCSEECHHHHH-HSHHHHTTCSEEC
T ss_pred cEEEeCCceEEEECCCCCEeEEEEEcCcCHHHHh-cccHhhhcccccC
Confidence 9999999999999999999999999999999999 7999999999975
No 6
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.7e-50 Score=315.95 Aligned_cols=118 Identities=39% Similarity=0.610 Sum_probs=112.3
Q ss_pred ccceeccceEEEeeCcccceEEEEEeeC--C--cc--ccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCC
Q 030970 47 RTFIQMRTVLKVVDNSGAKTVMCIQPLK--G--RK--VARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDG 120 (168)
Q Consensus 47 ~~MIq~~T~L~VaDNSGak~v~cI~vl~--~--~k--~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG 120 (168)
-.|||.+|+|+|+|||||++++||++++ + ++ +|.+||+|++|||++.|+. |||+++|||||||++++|+||
T Consensus 18 ~~mIq~~t~L~VaDNSGAk~v~cI~Vlg~kg~~~r~~~A~iGD~IvvsVKk~~p~~---kg~V~kAVIVRtkk~~rR~dG 94 (141)
T 3j21_J 18 TRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDM---RHQVVRAVIIRQRKEYRRLDG 94 (141)
T ss_dssp CCCBCTTCEEEECSSSSEEEEEEEEETTCCCCTTCCCCBCSSCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTS
T ss_pred cceeccCCEEEEccCCCCcEEEEEEEcCCCCcccccccCCcCCEEEEEEEecCCCC---cCceEEEEEEEeCCccCCCCC
Confidence 5799999999999999999999999998 3 33 5999999999999999998 599999999999999999999
Q ss_pred ceEeecCceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970 121 SEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 168 (168)
Q Consensus 121 ~~ikFddNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~ 168 (168)
++++|||||+||+|++++|+|||||||||+|||++ |+||+|||++++
T Consensus 95 s~i~FddNA~VLin~~g~p~GTRI~GPVarElr~~-~~KI~SlA~~iv 141 (141)
T 3j21_J 95 MRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAER-WVRIGSIASIIV 141 (141)
T ss_dssp CEECCSSCEEEEBCTTSCBCSSCCCSEECHHHHHH-CHHHHHHCSEEC
T ss_pred cEEEcCCcEEEEECCCCCEeeeEEEccccHHHHhh-chHHhhcccccC
Confidence 99999999999999999999999999999999994 999999999986
No 7
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=100.00 E-value=1.3e-49 Score=311.53 Aligned_cols=118 Identities=31% Similarity=0.435 Sum_probs=112.6
Q ss_pred ccceeccceEEEeeCcccceEEEEEeeCC--c----cccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCC
Q 030970 47 RTFIQMRTVLKVVDNSGAKTVMCIQPLKG--R----KVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDG 120 (168)
Q Consensus 47 ~~MIq~~T~L~VaDNSGak~v~cI~vl~~--~----k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG 120 (168)
-.+||++|+|+|+|||||++++||+++++ + ++|++||+|++|||++.|+. |||+++|||||||++++|+||
T Consensus 14 ~~gl~~~t~L~VaDNSGAk~v~cI~Vlg~~~r~~r~~~A~iGD~IvvsVK~~~p~~---k~~V~~AVIVRtkk~~rR~dG 90 (137)
T 3u5e_V 14 SLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPEL---RKKVMPAIVVRQAKSWRRRDG 90 (137)
T ss_dssp CCCEETTCEEEECBSSSBCEEEEEEETTCCCCTTCCCEECTTCEEEEECSSBCTTT---TTSCEEEEEEECCSCEECTTS
T ss_pred cccccCCCEEEEeeCCCCcEEEEEEEeCCCCcccccccCCcCCEEEEEEEECCCCC---CCcEEEEEEEEeccccCcCCC
Confidence 45899999999999999999999999985 2 48999999999999999998 589999999999999999999
Q ss_pred ceEeecCceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970 121 SEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 168 (168)
Q Consensus 121 ~~ikFddNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~ 168 (168)
++++|||||+||+|++++|+|||||||||+|||++ |+||+|||++++
T Consensus 91 ~~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~-~~KI~SlA~~vv 137 (137)
T 3u5e_V 91 VFLYFEDNAGVIANPKGEMKGSAITGPVGKECADL-WPRVASNSGVVV 137 (137)
T ss_dssp CEEEESSCEEEEBCTTCCBSSSCBCSCBCHHHHTT-CHHHHHTCSSBC
T ss_pred eEEEcCCceEEEECCCCCEeeeEEEcchhHHHHHH-hhHHHhcccccC
Confidence 99999999999999999999999999999999997 999999999986
No 8
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=50.16 E-value=38 Score=25.23 Aligned_cols=42 Identities=24% Similarity=0.382 Sum_probs=30.1
Q ss_pred cccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCceEeecCceEE
Q 030970 77 KVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVV 131 (168)
Q Consensus 77 k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~~ikFddNavV 131 (168)
...++||.|++.- + -|.-++|.|++.+.+. ...+.|+||+.-
T Consensus 4 ~~v~vGq~V~akh-----~----ngryy~~~V~~~~~~~----~y~V~F~DgS~s 45 (118)
T 2qqr_A 4 QSITAGQKVISKH-----K----NGRFYQCEVVRLTTET----FYEVNFDDGSFS 45 (118)
T ss_dssp SCCCTTCEEEEEC-----T----TSSEEEEEEEEEEEEE----EEEEEETTSCEE
T ss_pred ceeccCCEEEEEC-----C----CCCEEeEEEEEEeeEE----EEEEEcCCCCcc
Confidence 3457999988421 1 3678889999987764 357899998864
No 9
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=37.17 E-value=77 Score=23.52 Aligned_cols=52 Identities=27% Similarity=0.358 Sum_probs=36.3
Q ss_pred ceeccceEEEeeCc-ccceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEE
Q 030970 49 FIQMRTVLKVVDNS-GAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHA 106 (168)
Q Consensus 49 MIq~~T~L~VaDNS-Gak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~A 106 (168)
.|..++.| |+- -.-.++-|+. .+ -..|..||-|-++++.... .++.|++.+.
T Consensus 59 ~LK~G~~V---Pg~~~vg~VkSIE~-~~e~v~eA~~GdnVai~Ikg~~~--~I~~GdVLyv 113 (116)
T 1xe1_A 59 MIGVGFKV---KGPSGIGGIVRIER-NREKVEFAIAGDRIGISIEGKIG--KVKKGDVLEI 113 (116)
T ss_dssp EEETTCEE---ECSSCEEEEEEEEE-TTEEESEEETTCEEEEEEESCCC--CCCTTCEEEE
T ss_pred EEcCCCCc---CCCceEEEEEEEEE-CCcCcCCcCCCCEEEEEEECCcc--ccCCCcEEEE
Confidence 56778777 544 2444566654 33 3579999999999997655 6888888764
No 10
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=33.41 E-value=59 Score=20.59 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=23.6
Q ss_pred eeeecCCCceEeecCceEEEEcCCCCcce
Q 030970 113 MQHGRFDGSEVRFDDNAVVLVNKAGEPTG 141 (168)
Q Consensus 113 k~~~R~dG~~ikFddNavVLln~k~~plG 141 (168)
....++||.+.-+...+.++.|++|+|.+
T Consensus 70 ~r~~~~dG~~~w~~~~~~~~~d~~G~~~~ 98 (115)
T 3h9w_A 70 YRALHRDGHYVWIRDVVHVVRDDSGEVEA 98 (115)
T ss_dssp EEEECTTSCEEEEEEEEEEEECTTSCEEE
T ss_pred EEEEcCCCCEEEEEEEEEEEECCCCCEEE
Confidence 44567899998899999999999998753
No 11
>3r87_A Putative uncharacterized protein; unknown function; 1.05A {Photobacterium profundum}
Probab=30.96 E-value=1.3e+02 Score=20.56 Aligned_cols=64 Identities=11% Similarity=0.088 Sum_probs=35.4
Q ss_pred ccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecC-CCceEeecCceEEEEcCCCCcceeEEecchhHhhhc
Q 030970 76 RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRF-DGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRR 154 (168)
Q Consensus 76 ~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~-dG~~ikFddNavVLln~k~~plGTRI~GpV~~Elr~ 154 (168)
++.+..||.|.+...-..... ..+. + .....+. ||..+---+-..|.+|.++.|. |+|.|+++
T Consensus 67 ~~p~~~gd~v~v~t~v~~~~~----~s~~----~--~~~i~~~~~g~~~a~~~~~~v~vd~~~r~~------~iP~~~~~ 130 (135)
T 3r87_A 67 QDGVEFAEICDIRTSFTLDGK----YKTL----W--RQEVWRPGASRAAVIGDIEMVCLDKEKRLQ------PVPADILA 130 (135)
T ss_dssp CSCCCTTCEEEEEEEEEEETT----TEEE----E--EEEEECTTCSSCSEEEEEEEEEECTTCCEE------CCCHHHHH
T ss_pred CCcccCCCEEEEEEEEEEeCC----EEEE----E--EEEEEECCCCEEEEEEEEEEEEECCCCCEe------cCCHHHHH
Confidence 467889999998875332221 1111 1 2222333 5543333334456777665554 88999887
Q ss_pred C
Q 030970 155 K 155 (168)
Q Consensus 155 k 155 (168)
.
T Consensus 131 ~ 131 (135)
T 3r87_A 131 S 131 (135)
T ss_dssp H
T ss_pred H
Confidence 4
No 12
>3ck1_A Putative thioesterase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.74A {Ralstonia eutropha}
Probab=30.20 E-value=1.1e+02 Score=21.07 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=32.7
Q ss_pred ccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCceEeecCceEEEEc-CCCCcceeEEecchhHhhhc
Q 030970 76 RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLVN-KAGEPTGTRVFGPVPHELRR 154 (168)
Q Consensus 76 ~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~~ikFddNavVLln-~k~~plGTRI~GpV~~Elr~ 154 (168)
++.+..||.|.+...-..... .....- ....+.||..+---+-..|.+| +.+.|. |+|.|+++
T Consensus 69 ~~~~~~gd~v~v~~~v~~~~~----~s~~~~------~~i~~~~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~ 132 (150)
T 3ck1_A 69 VAPSRLGETLTRELRVVKLGQ----SSFTVQ------VRFMGPDSGLRLEVTQRLVCVDTDKIAPR------PLPDPVRQ 132 (150)
T ss_dssp CSCCBTTCEEEEEEEEEEECS----SEEEEE------EEEECTTSCEEEEEEEEEECEEETTEEEC------CCCHHHHH
T ss_pred eCCCcCCCEEEEEEEEEEEcC----cEEEEE------EEEEeCCCEEEEEEEEEEEEEeCCCCccc------cCCHHHHH
Confidence 457889999888775322221 111111 1122234543332333345566 333343 89999987
Q ss_pred C
Q 030970 155 K 155 (168)
Q Consensus 155 k 155 (168)
.
T Consensus 133 ~ 133 (150)
T 3ck1_A 133 A 133 (150)
T ss_dssp H
T ss_pred H
Confidence 5
No 13
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=29.88 E-value=68 Score=23.17 Aligned_cols=32 Identities=6% Similarity=0.139 Sum_probs=23.7
Q ss_pred ccCcEEEEEEeeecCCCcccccceEEEEEEEeeee
Q 030970 80 RLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQ 114 (168)
Q Consensus 80 ~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~ 114 (168)
.+||+|.|.++-.. .+ ++=|.+.|+++..+..
T Consensus 5 ~~GDtv~V~~~i~g--~k-~R~q~F~GvvI~~~~~ 36 (98)
T 2ftc_K 5 YVGSILRVTTADPY--AS-GKISQFLGICIQRSGR 36 (98)
T ss_pred CCCCEEEEEEEECC--Cc-eEeeeEEEEEEEEECC
Confidence 58999999997552 22 3458999999987653
No 14
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=29.29 E-value=30 Score=26.03 Aligned_cols=41 Identities=24% Similarity=0.337 Sum_probs=28.2
Q ss_pred ccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCceEeecCceEE
Q 030970 78 VARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVV 131 (168)
Q Consensus 78 ~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~~ikFddNavV 131 (168)
..++||.|.+- . +-|.-++|-|++.+.+.- ..+.|+||+.-
T Consensus 6 ~v~vGq~V~ak-----~----~ngryy~~~V~~~~~~~~----y~V~F~DgS~s 46 (123)
T 2xdp_A 6 VISVGQTVITK-----H----RNTRYYSCRVMAVTSQTF----YEVMFDDGSFS 46 (123)
T ss_dssp CCCTTCCCCCC-----C----CCCCCCCCEEEEEEEEEE----EEEEETTSCEE
T ss_pred ccccCCEEEEE-----C----CCCcEEeEEEEEEeeEEE----EEEEcCCCCcc
Confidence 45688877621 1 126777788888887543 57899999876
No 15
>2o5u_A Thioesterase; putative thioesterese,, hydrolase; 1.91A {Pseudomonas aeruginosa} SCOP: d.38.1.1 PDB: 2av9_A 2o6t_A 2o6b_A 2o6u_A
Probab=27.67 E-value=1.1e+02 Score=21.30 Aligned_cols=70 Identities=14% Similarity=0.123 Sum_probs=36.9
Q ss_pred ccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeec-CCCceEeecCceEEEEcC-CCCcceeEEecchhHhhh
Q 030970 76 RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGR-FDGSEVRFDDNAVVLVNK-AGEPTGTRVFGPVPHELR 153 (168)
Q Consensus 76 ~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R-~dG~~ikFddNavVLln~-k~~plGTRI~GpV~~Elr 153 (168)
++.+..||.|.+...-..... ...... ....+ .||..+---+-..|.+|. .+.|. |+|.|++
T Consensus 74 ~~~~~~gd~v~v~t~v~~~~~----~s~~~~------~~i~~~~~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~ 137 (148)
T 2o5u_A 74 FAPVAFPQRIEMGLRVARLGN----SSVQYE------LALFLEGQREACAAGRFVHVFVERRSSRPV------AIPQELR 137 (148)
T ss_dssp CSCCCTTSCEEEEEEEEEECS----SEEEEE------EEEEESSCCBCSEEEEEEEEEEETTTCCBC------CCCHHHH
T ss_pred cCcccCCCEEEEEEEEEEeCC----cEEEEE------EEEEECCCceEEEEEEEEEEEEECCCCccc------cCCHHHH
Confidence 467889999988776322221 111111 11211 345433333334566775 35665 8999998
Q ss_pred cCCcchhec
Q 030970 154 RKKHVSILT 162 (168)
Q Consensus 154 ~kk~~KI~S 162 (168)
+. +.+...
T Consensus 138 ~~-l~~~~~ 145 (148)
T 2o5u_A 138 DA-LAALQS 145 (148)
T ss_dssp HH-HHTTC-
T ss_pred HH-HHHhhc
Confidence 85 554443
No 16
>2egj_A Hypothetical protein AQ_1494; structural genomics; 1.80A {Aquifex aeolicus} PDB: 2egi_A 2egr_A
Probab=27.63 E-value=1.3e+02 Score=19.72 Aligned_cols=16 Identities=13% Similarity=0.071 Sum_probs=12.4
Q ss_pred ccccccCcEEEEEEee
Q 030970 76 RKVARLGDTIVASVKE 91 (168)
Q Consensus 76 ~k~a~vGD~I~vsVKk 91 (168)
++.+..||.|.+...-
T Consensus 64 ~~~~~~gd~v~v~~~v 79 (128)
T 2egj_A 64 KKPLFYDDVFEVHLNL 79 (128)
T ss_dssp CSCCCTTCEEEEEEEE
T ss_pred cCCCcCCCEEEEEEEE
Confidence 4678899999887753
No 17
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=23.60 E-value=67 Score=20.52 Aligned_cols=30 Identities=7% Similarity=0.006 Sum_probs=23.0
Q ss_pred eeeeecCCCceEeecCceEEEEcC-CCCcce
Q 030970 112 AMQHGRFDGSEVRFDDNAVVLVNK-AGEPTG 141 (168)
Q Consensus 112 kk~~~R~dG~~ikFddNavVLln~-k~~plG 141 (168)
-...+++||.++-++.++..+.|+ .++|.+
T Consensus 77 e~r~~~~dG~~~w~~~~~~~~~~~~~g~~~~ 107 (121)
T 3f1p_B 77 MFRFRSKNQEWLWMRTSSFTFQNPYSDEIEY 107 (121)
T ss_dssp EEEEECTTSCEEEEEEEEEEECCTTCCCCCE
T ss_pred EEEEEecCCCEEEEEEEEEEEECCCCCceeE
Confidence 344678899999999999988887 566643
No 18
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=22.96 E-value=1.2e+02 Score=18.45 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=23.3
Q ss_pred eeeeecCCCceEeecCceEEEEcCCCCcce
Q 030970 112 AMQHGRFDGSEVRFDDNAVVLVNKAGEPTG 141 (168)
Q Consensus 112 kk~~~R~dG~~ikFddNavVLln~k~~plG 141 (168)
.....++||...-+...+..+.+++|.+.|
T Consensus 80 e~r~~~~~g~~~w~~~~~~~~~~~~g~~~~ 109 (118)
T 3icy_A 80 VYRIVTPEGKLHWIEDHMRSSFSDDGLFSG 109 (118)
T ss_dssp EEEEECTTCCEEEEEEEEEEEECTTSCEEE
T ss_pred EEEEECCCCCEEEEEEEEEEEECCCCCEEE
Confidence 344567899888888888888888888764
No 19
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=22.84 E-value=62 Score=20.45 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=23.2
Q ss_pred eeeeecCCCceEeecCceEEEEcC-CCCcce
Q 030970 112 AMQHGRFDGSEVRFDDNAVVLVNK-AGEPTG 141 (168)
Q Consensus 112 kk~~~R~dG~~ikFddNavVLln~-k~~plG 141 (168)
-...+++||.++-++.++..+.|+ ++.|.+
T Consensus 73 e~r~~~~dG~~~w~~~~~~~~~d~~~g~~~~ 103 (117)
T 3f1p_A 73 QYRMLAKHGGYVWLETQGTVIYNPRNLQPQC 103 (117)
T ss_dssp CEEEECTTSSEEEEEEEEEEEEETTTTEEEE
T ss_pred EEEEEecCCCEEEEEEeeEEEECCCCCCceE
Confidence 345678899999999999988887 666643
No 20
>3qr8_A GPV, baseplate assembly protein V; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, tail spike, viral protein; HET: MSE; 2.03A {Enterobacteria phage P2}
Probab=22.73 E-value=1.9e+02 Score=22.53 Aligned_cols=82 Identities=20% Similarity=0.262 Sum_probs=45.8
Q ss_pred ccceeccceEEEeeCcccceEE----------EEEeeCC----ccccccCcEEEEEEeeecCCCcccccceEEEEEEEee
Q 030970 47 RTFIQMRTVLKVVDNSGAKTVM----------CIQPLKG----RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAA 112 (168)
Q Consensus 47 ~~MIq~~T~L~VaDNSGak~v~----------cI~vl~~----~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtk 112 (168)
++||+.++.-.+-+-.+--.|+ .....-+ ...-.+||.+++..- -|+.-.++|+..-
T Consensus 15 ~nlir~G~V~~vd~~~~rvrV~~~~~~t~wl~~~~~~ag~~~~~~~P~vGeqV~v~f~---------~Gd~~~gvVlg~~ 85 (211)
T 3qr8_A 15 RNMIRTGIIVETDLNAGRCRVQTGGMCTDWLQWLTHRAGRSRTWWAPSVGEQVLILAV---------GGELDTAFVLPGI 85 (211)
T ss_dssp HHHEEEEEEEEEETTTTEEEEEETTEECCCEEECCSCBSSSBCCCCCCTTCEEEEEEC---------CTTTCCEEEEEEE
T ss_pred HhCcEEEEEEEEECCCCEEEEEeCCccceeEEeEcccccCCceEeCCCCCCEEEEEeC---------CCccCccEEEeee
Confidence 7899999988876665533333 2221111 112459999988763 2556667888762
Q ss_pred ee------eecCCCceEeecCceEEEEcCCC
Q 030970 113 MQ------HGRFDGSEVRFDDNAVVLVNKAG 137 (168)
Q Consensus 113 k~------~~R~dG~~ikFddNavVLln~k~ 137 (168)
+. ....|-.+++|.|-+.+..|+++
T Consensus 86 ~s~~~~~P~~~~~~~~~~~~dG~~i~yd~~~ 116 (211)
T 3qr8_A 86 YSGDNPSPSVSADALHIRFPDGAVIEYEPET 116 (211)
T ss_dssp CCSSSCCSCCCSSCEEEECTTSCEEEEETTT
T ss_pred cCcccCCCCCCCCeEEEEcCCCCEEEEECCC
Confidence 21 11123345556666665555543
No 21
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=22.39 E-value=83 Score=23.23 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=22.9
Q ss_pred eeecCCCceEee--cCceEEEEcCCCCccee
Q 030970 114 QHGRFDGSEVRF--DDNAVVLVNKAGEPTGT 142 (168)
Q Consensus 114 ~~~R~dG~~ikF--ddNavVLln~k~~plGT 142 (168)
.+++..++.+.| ..|-+|+++.+|+-++=
T Consensus 58 TYR~~~dskVy~N~~T~~~Viid~~g~FvsG 88 (107)
T 1v74_A 58 TYRREKGSKVYFNPNTMNVVIIKSNGEFLSG 88 (107)
T ss_dssp BCTTSTTCEEEECTTTCEEEEECTTSCEEEE
T ss_pred eeecCCCcEEEEeCCCCeEEEEcCCCCEEEE
Confidence 345656899999 78899999999987543
No 22
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=22.28 E-value=1.2e+02 Score=23.43 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=24.4
Q ss_pred ccccCcEEEEEEeeecCCCcccccceEEEEEEEeeee
Q 030970 78 VARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQ 114 (168)
Q Consensus 78 ~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~ 114 (168)
.-.+||+|.|.++-...+ -.+=+.+.|+|+..+..
T Consensus 21 ~F~~GDtV~V~~~i~EG~--keRiQ~FeGvVI~rr~~ 55 (146)
T 3v2d_T 21 EFRPGDTVRVSYKVKEGN--RTRIQDFEGIVIRIRRN 55 (146)
T ss_dssp CCCTTCEEEEEEEEECSS--CEEEEEEEEEEEEEECC
T ss_pred CcCCCCEEEEEEEEccCC--ceeeeeEEEEEEEEECC
Confidence 356999999999853221 12247899999987753
No 23
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=21.60 E-value=1.1e+02 Score=22.69 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=23.9
Q ss_pred ccccCcEEEEEEeeecCCCcccccceEEEEEEEeeee
Q 030970 78 VARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQ 114 (168)
Q Consensus 78 ~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~ 114 (168)
.-.+||+|.|.++-...+. .+=|.+.|+++..+..
T Consensus 18 ~f~~GDtv~V~~~i~EG~k--eRiQ~F~GvvI~~~~~ 52 (114)
T 3r8s_P 18 SFRPGDTVEVKVWVVEGSK--KRLQAFEGVVIAIRNR 52 (114)
T ss_dssp CCCTTCEEEEEEEEEETTE--EEEEEEEEEEEEEECC
T ss_pred ccCCCCEEEEEEEEecCCc--eeeeeEEEEEEEEECC
Confidence 3569999999987432211 1247899999987753
No 24
>3d6l_A Putative hydrolase; hot DOG fold, thioesterase, acyl-COA; 2.59A {Campylobacter jejuni}
Probab=20.69 E-value=2.1e+02 Score=19.43 Aligned_cols=16 Identities=25% Similarity=0.302 Sum_probs=11.7
Q ss_pred ccccccCcEEEEEEee
Q 030970 76 RKVARLGDTIVASVKE 91 (168)
Q Consensus 76 ~k~a~vGD~I~vsVKk 91 (168)
.+.+.+||.+.+..+-
T Consensus 60 ~~pv~~gd~l~v~~~v 75 (137)
T 3d6l_A 60 KEPVFIGDIISCYSKV 75 (137)
T ss_dssp CSCCCTTCEEEEEEEE
T ss_pred eCCccCCCEEEEEEEE
Confidence 4678899988776653
No 25
>3hm0_A Probable thioesterase; niaid, ssgcid, decode, UW, SBRI, infectious disease, rhizobiales, bacteremia, endocarditis, bacillary angiomatosis; 2.50A {Bartonella henselae}
Probab=20.64 E-value=2.3e+02 Score=20.64 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=30.3
Q ss_pred ccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCceEeecCceEEEEcCCCCcceeEEecchhHhhhcC
Q 030970 76 RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRK 155 (168)
Q Consensus 76 ~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~~ikFddNavVLln~k~~plGTRI~GpV~~Elr~k 155 (168)
++.+..||.|.+...-..-.. ....... ...+ ||..+---+-..|.+|.++.|. |+|.|+|+.
T Consensus 102 ~~p~~~gd~i~V~t~v~~~~~----~s~~~~~------~i~~-~g~~~a~a~~~~V~vD~~~rp~------~iP~~~r~~ 164 (167)
T 3hm0_A 102 SRPAQIDNLLTIKTRISRLQG----ARFFMEQ------YILH-GESMLVTAKVEIALINEEGKPR------RLPKELFST 164 (167)
T ss_dssp CSCCCTTCEEEEEEEEEEECS----SEEEEEE------EEEE-TTEEEEEEEEEEEEEETTSCBC------CCCC-----
T ss_pred ecCCCCCCEEEEEEEEEEeCC----eEEEEEE------EEEE-CCEEEEEEEEEEEEECCCCCEe------cCCHHHHHH
Confidence 467889999988876332221 1111111 1122 4543333333456777665444 889888874
No 26
>1pyv_A ATP synthase beta chain, mitochondrial precursor; hydrolase; NMR {Nicotiana plumbaginifolia} SCOP: j.36.4.1
Probab=20.09 E-value=48 Score=21.23 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=21.5
Q ss_pred hhhhhhcccccccccccccCccccccCccccc
Q 030970 3 ASLASKWSRVILVGRSLLGGLGNNLSGLSSTS 34 (168)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 34 (168)
.-|+.-..| +|-.++.+|||+.++..+-+
T Consensus 9 sllrqsaqr---ggglisrslgnsipksasra 37 (54)
T 1pyv_A 9 SLLRQSAQR---GGGLISRSLGNSIPKSASRA 37 (54)
T ss_dssp HHHHHHHTT---SSCSSSSTGGGGTTTTSTTT
T ss_pred HHHHHHHHh---CCceeehhhcccCcchhhhh
Confidence 334455567 88899999999998877543
Done!