RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 030970
(168 letters)
>gnl|CDD|201105 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e.
Length = 122
Score = 171 bits (436), Expect = 5e-56
Identities = 72/117 (61%), Positives = 85/117 (72%), Gaps = 2/117 (1%)
Query: 50 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 107
IQ+ T L V DNSGAK V CI+ L G +K A++GD IV SVK+A+P GKVKKG VV AV
Sbjct: 2 IQVGTRLNVADNSGAKKVKCIKVLGGSRKKYAKVGDIIVVSVKKAIPKGKVKKGDVVKAV 61
Query: 108 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 164
+VR + R DGS +RFDDNAVVL+N GEP GTR+FGPV ELR KK IL+LA
Sbjct: 62 IVRTKKEVRRKDGSYIRFDDNAVVLINNKGEPKGTRIFGPVARELRAKKFPKILSLA 118
>gnl|CDD|180117 PRK05483, rplN, 50S ribosomal protein L14; Validated.
Length = 122
Score = 171 bits (435), Expect = 8e-56
Identities = 73/117 (62%), Positives = 83/117 (70%), Gaps = 2/117 (1%)
Query: 50 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 107
IQ T L V DNSGAK VMCI+ L G R+ A +GD IV SVKEA+P GKVKKG VV AV
Sbjct: 2 IQQETRLNVADNSGAKEVMCIKVLGGSKRRYASIGDVIVVSVKEAIPRGKVKKGDVVKAV 61
Query: 108 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 164
VVR R DGS +RFDDNA VL+N GEP GTR+FGPV ELR KK + I++LA
Sbjct: 62 VVRTKKGVRRPDGSYIRFDDNAAVLLNNDGEPRGTRIFGPVARELRDKKFMKIVSLA 118
>gnl|CDD|223171 COG0093, RplN, Ribosomal protein L14 [Translation, ribosomal
structure and biogenesis].
Length = 122
Score = 155 bits (394), Expect = 1e-49
Identities = 67/117 (57%), Positives = 83/117 (70%), Gaps = 2/117 (1%)
Query: 50 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 107
IQ++T L V DNSGAK VMCI+ L G R+ A +GD IV SVK+A+P G VKKG VV AV
Sbjct: 2 IQVQTRLNVADNSGAKEVMCIKVLGGSRRRYAGVGDIIVVSVKKAIPRGMVKKGDVVKAV 61
Query: 108 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 164
VVR + R DGS ++FDDNA V++N GEP GTR+FGPV ELR + + I +LA
Sbjct: 62 VVRTKKEVRRPDGSYIKFDDNAAVIINPDGEPRGTRIFGPVARELRERGFMKIASLA 118
>gnl|CDD|130139 TIGR01067, rplN_bact, ribosomal protein L14, bacterial/organelle.
This model distinguishes bacterial and most organellar
examples of ribosomal protein L14 from all archaeal and
eukaryotic forms [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 122
Score = 149 bits (378), Expect = 3e-47
Identities = 67/118 (56%), Positives = 81/118 (68%), Gaps = 2/118 (1%)
Query: 50 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 107
IQ ++ L V DNSGAK V CI+ L G R+ A +GD IV VK+A+P GKVKKG VV AV
Sbjct: 2 IQQQSRLNVADNSGAKKVQCIKVLGGSRRRYATVGDVIVVVVKDAIPNGKVKKGDVVKAV 61
Query: 108 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAE 165
+VR R DGS +RFDDNA VL+NK EP GTR+FGPV ELR K + I++LA
Sbjct: 62 IVRTKKGVRRKDGSYIRFDDNACVLINKNKEPRGTRIFGPVARELRDKGFMKIVSLAP 119
>gnl|CDD|176997 CHL00057, rpl14, ribosomal protein L14.
Length = 122
Score = 144 bits (366), Expect = 3e-45
Identities = 58/117 (49%), Positives = 79/117 (67%), Gaps = 2/117 (1%)
Query: 50 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 107
IQ +T L V DNSGA+ +MCI+ L RK A +GD I+A VKEA+P +K+ +VV AV
Sbjct: 2 IQPQTYLNVADNSGARKLMCIRVLGASNRKYAHIGDVIIAVVKEAVPNMPLKRSEVVRAV 61
Query: 108 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 164
+VR + R +G +RFDDNA V++++ G P GTRVFGP+ ELR K I++LA
Sbjct: 62 IVRTCKELKRDNGMIIRFDDNAAVVIDQEGNPKGTRVFGPIARELREKNFTKIVSLA 118
>gnl|CDD|181478 PRK08571, rpl14p, 50S ribosomal protein L14P; Reviewed.
Length = 132
Score = 86.5 bits (215), Expect = 2e-22
Identities = 45/108 (41%), Positives = 62/108 (57%), Gaps = 9/108 (8%)
Query: 50 IQMRTVLKVVDNSGAKTVMCIQ--PLKGRK----VARLGDTIVASVKEAMPTGKVKKGQV 103
+ + L DN+GAK V I KG K A +GD +V SVK+ P +++K QV
Sbjct: 12 LPVGARLVCADNTGAKEVEIISVKGYKGVKRRLPKAGVGDMVVVSVKKGTP--EMRK-QV 68
Query: 104 VHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 151
+ AVVVR ++ R DG+ V+F+DNA V+V G P GT + GPV E
Sbjct: 69 LRAVVVRQRKEYRRPDGTRVKFEDNAAVIVTPEGTPKGTEIKGPVARE 116
>gnl|CDD|132712 TIGR03673, rpl14p_arch, 50S ribosomal protein L14P. Part of the
50S ribosomal subunit. Forms a cluster with proteins L3
and L24e, part of which may contact the 16S rRNA in 2
intersubunit bridges.
Length = 131
Score = 84.3 bits (209), Expect = 1e-21
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 9/108 (8%)
Query: 50 IQMRTVLKVVDNSGAKTVMCI--QPLKGRK----VARLGDTIVASVKEAMPTGKVKKGQV 103
+ + +L DN+GAK V I + KG K A +GD +V SVK+ P + QV
Sbjct: 11 LPVGALLVCADNTGAKEVEVISVKGYKGVKRRLPCAGVGDMVVVSVKKGTPE---MRKQV 67
Query: 104 VHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 151
AVVVR ++ R DG+ V+F+DNAVV+V GEP GT + GPV E
Sbjct: 68 FKAVVVRQRKEYRRPDGTRVKFEDNAVVIVTPDGEPKGTEIKGPVARE 115
>gnl|CDD|185418 PTZ00054, PTZ00054, 60S ribosomal protein L23; Provisional.
Length = 139
Score = 60.1 bits (146), Expect = 3e-12
Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 9/103 (8%)
Query: 55 VLKVVDNSGAKT--VMCIQPLKGR----KVARLGDTIVASVKEAMPTGKVKKGQVVHAVV 108
V+ DNSGAK ++ ++ + GR A LGD ++A+VK+ P + K V++AV+
Sbjct: 24 VVNCADNSGAKNLYIIAVKGIHGRLNRLPSASLGDMVLATVKKGKPELRKK---VLNAVI 80
Query: 109 VRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 151
+R R DG + F+DNA V+VN GE G+ + GPV E
Sbjct: 81 IRQRKAWRRKDGVFIYFEDNAGVIVNPKGEMKGSAITGPVAKE 123
>gnl|CDD|140341 PTZ00320, PTZ00320, ribosomal protein L14; Provisional.
Length = 188
Score = 33.1 bits (75), Expect = 0.035
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 97 KVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKK 156
+VK G + ++ + R G + FD N +L+N P GTRV + K
Sbjct: 117 RVKPGNIYWVCLLSRRQTNTRMSGLQTNFDRNTCILMNDQRVPLGTRVMYCAGRHVNHKY 176
Query: 157 HVSILTLA 164
H+ + LA
Sbjct: 177 HLKAVVLA 184
>gnl|CDD|203838 pfam08013, Tagatose_6_P_K, Tagatose 6 phosphate kinase. Proteins
in this family are tagatose 6 phosphate kinases.
Length = 423
Score = 26.8 bits (60), Expect = 6.3
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 105 HAVVVRAAMQHGRFDGSEV 123
H +V+ AA++ GS V
Sbjct: 25 HPLVLEAALRQALATGSPV 43
>gnl|CDD|235251 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional.
Length = 460
Score = 26.3 bits (59), Expect = 8.1
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 10/42 (23%)
Query: 127 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 168
+ +VV +N A +P R+ P R LT AE+LA
Sbjct: 204 ERSVVFLNLADDPAIERILTP-----R-----MALTAAEYLA 235
>gnl|CDD|225709 COG3168, PilP, Tfp pilus assembly protein PilP [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 170
Score = 25.9 bits (57), Expect = 8.2
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 96 GKVKKGQVVHAVV--------VRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTG 141
G +K GQ V A++ VR G+ G VR D+++VL + TG
Sbjct: 102 GTLKSGQGVSALIEAPGGVYRVRVGQYLGQNYGRVVRITDDSIVLNELVPDGTG 155
>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde
dehydrogenase. Members of this protein family are
2-hydroxymuconic semialdehyde dehydrogenase. Many
aromatic compounds are catabolized by way of the
catechol, via the meta-cleavage pathway, to pyruvate and
acetyl-CoA. This enzyme performs the second of seven
steps in that pathway for catechol degradation [Energy
metabolism, Other].
Length = 481
Score = 26.2 bits (58), Expect = 9.8
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 16/87 (18%)
Query: 62 SGAKTVMCIQPLKGRKVARLGDTIVASVKEAM---------PTGKVKKGQVVHAVVVRAA 112
KT I P+ GR +AR+ + A V A+ P GK+ V RA
Sbjct: 11 ESGKTFANINPVDGRVIARVHEAGAAEVDAAVAAARAALKGPWGKM-------TVAERAD 63
Query: 113 MQHGRFDGSEVRFDDNAVVLVNKAGEP 139
+ + D E RFDD V G+P
Sbjct: 64 LLYAVADEIERRFDDFLAAEVADTGKP 90
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.132 0.370
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,301,958
Number of extensions: 748481
Number of successful extensions: 732
Number of sequences better than 10.0: 1
Number of HSP's gapped: 720
Number of HSP's successfully gapped: 33
Length of query: 168
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 78
Effective length of database: 6,945,742
Effective search space: 541767876
Effective search space used: 541767876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)