RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 030970
         (168 letters)



>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus
           thermophilus [TaxId: 274]}
          Length = 122

 Score =  151 bits (383), Expect = 1e-48
 Identities = 68/117 (58%), Positives = 84/117 (71%), Gaps = 2/117 (1%)

Query: 50  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 107
           IQ +T L+V DN+GA+ +MCI+ LKG   K A +GD IVASVKEA+P G VK+G VV AV
Sbjct: 2   IQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAV 61

Query: 108 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 164
           VVR   +  R DGS +RFDDNA V++N   EP GTRVFGPV  ELR K  + I++LA
Sbjct: 62  VVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLA 118


>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 122

 Score =  141 bits (357), Expect = 1e-44
 Identities = 62/117 (52%), Positives = 79/117 (67%), Gaps = 2/117 (1%)

Query: 50  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 107
           IQ  + LKV DNSGA+ V+ I+ L G  R+ A +GD +VA+VK+A P G VKKGQVV AV
Sbjct: 2   IQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAV 61

Query: 108 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 164
           VVR      R DGS +RFD+NA V++     P GTR+FGPV  ELR K  + I++LA
Sbjct: 62  VVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLA 118


>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli
           [TaxId: 562]}
          Length = 121

 Score =  141 bits (356), Expect = 1e-44
 Identities = 64/118 (54%), Positives = 81/118 (68%), Gaps = 3/118 (2%)

Query: 50  IQMRTVLKVVDNSGAKTVMCIQPLKGR--KVARLGDTIVASVKEAMPTGKVKKGQVVHAV 107
           IQ +T+L V DNSGA+ VMCI+ L G   + A +GD I  ++KEA+P GKVKKG V+ AV
Sbjct: 1   IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAV 60

Query: 108 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGE-PTGTRVFGPVPHELRRKKHVSILTLA 164
           VVR      R DGS +RFD NA VL+N   E P GTR+FGPV  ELR +K + I++LA
Sbjct: 61  VVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLA 118


>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 132

 Score =  131 bits (332), Expect = 8e-41
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 10/121 (8%)

Query: 50  IQMRTVLKVVDNSGAKTVMCIQPLKG------RKVARLGDTIVASVKEAMPTGKVKKGQV 103
           ++  +++   DN+GA+ +  I              A LGD I  SV +  P     + QV
Sbjct: 12  LEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTP---EMRRQV 68

Query: 104 VHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTL 163
           + AVVVR      R DG+ V+F+DNA V+V++  +P GT + GP+  E+  ++  S+ + 
Sbjct: 69  LEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREV-AQRFGSVASA 127

Query: 164 A 164
           A
Sbjct: 128 A 128


>d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961
          {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 248

 Score = 29.9 bits (65), Expect = 0.11
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)

Query: 69 CIQ-PLKGRKVARLGDTIVA 87
          CIQ P +G+KV  +GD+I  
Sbjct: 1  CIQHPWQGKKVGYIGDSITD 20


>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose
           pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 292

 Score = 26.2 bits (57), Expect = 2.2
 Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 1/74 (1%)

Query: 92  AMPTGKVKKGQVVHAVVVR-AAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPH 150
           A+P G V  G+ + A + R    +                  ++K        ++     
Sbjct: 153 AIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVD 212

Query: 151 ELRRKKHVSILTLA 164
           + R   +  + T A
Sbjct: 213 DPRNTDNAWMETEA 226


>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea
           ramigera [TaxId: 350]}
          Length = 124

 Score = 24.1 bits (52), Expect = 6.2
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 106 AVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKK 156
           A    A  +   +D S V  +  A+ + +  G  +G R+   +  E++R+ 
Sbjct: 52  AAQACAVNKDLGWDPSIVNVNGGAIAIGHPIG-ASGARILNTLLFEMKRRG 101


>d1c8ba_ c.56.1.2 (A:) Germination protease {Bacillus megaterium
           [TaxId: 1404]}
          Length = 371

 Score = 24.4 bits (53), Expect = 7.7
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 58  VVDNSGAKTVMCIQPLKGRKVARLGDTI 85
           VV       ++ I  L  R + R+  TI
Sbjct: 181 VVKKVNPDFIIAIDALAARSIERVNATI 208


>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 124

 Score = 23.7 bits (51), Expect = 9.4
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 106 AVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKK 156
           A      +     D ++V     A+ L +  G  TG R    +  EL++ +
Sbjct: 54  AAQALYCIHKLGIDLNKVNPRGGAIALGHPLG-CTGARQVATILRELKKDQ 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.370 

Gapped
Lambda     K      H
   0.267   0.0349    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 565,641
Number of extensions: 23575
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 14
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (24.1 bits)