Query 030971
Match_columns 168
No_of_seqs 161 out of 794
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 11:23:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.7 3.3E-17 1.1E-21 113.8 4.4 48 5-54 4-51 (63)
2 4gat_A Nitrogen regulatory pro 99.7 2.1E-17 7.2E-22 115.6 3.3 51 2-54 3-53 (66)
3 1gnf_A Transcription factor GA 99.7 5.7E-17 1.9E-21 106.4 4.7 44 6-51 2-45 (46)
4 2vut_I AREA, nitrogen regulato 99.7 5.2E-17 1.8E-21 105.2 3.6 43 8-52 1-43 (43)
5 2kae_A GATA-type transcription 99.6 1.3E-16 4.3E-21 113.2 2.5 54 2-56 2-55 (71)
6 4hc9_A Trans-acting T-cell-spe 99.5 8.9E-15 3.1E-19 111.3 4.3 48 5-54 56-103 (115)
7 4hc9_A Trans-acting T-cell-spe 99.4 5.5E-14 1.9E-18 106.9 3.5 48 5-54 2-49 (115)
8 1dl6_A Transcription factor II 71.6 1.5 5.1E-05 28.9 1.3 32 6-40 9-40 (58)
9 2d74_B Translation initiation 68.4 1.5 5.2E-05 34.3 1.0 29 9-38 105-133 (148)
10 1k81_A EIF-2-beta, probable tr 65.8 0.53 1.8E-05 28.5 -1.7 28 10-38 2-29 (36)
11 2b0o_E UPLC1; arfgap, structur 65.7 2.7 9.2E-05 34.1 2.0 36 6-43 40-75 (301)
12 2iqj_A Stromal membrane-associ 63.7 3.5 0.00012 31.4 2.2 36 6-43 25-60 (134)
13 2owa_A Arfgap-like finger doma 62.4 3.9 0.00013 31.5 2.2 35 7-43 35-69 (138)
14 1pft_A TFIIB, PFTFIIBN; N-term 62.2 0.91 3.1E-05 28.4 -1.2 31 7-40 4-34 (50)
15 3k7a_M Transcription initiatio 62.1 2.4 8.3E-05 36.1 1.1 32 7-39 20-51 (345)
16 2crr_A Stromal membrane-associ 61.6 5 0.00017 30.8 2.7 35 7-43 28-62 (141)
17 2olm_A Nucleoporin-like protei 59.3 3.7 0.00013 31.5 1.6 34 7-42 24-57 (140)
18 3dwd_A ADP-ribosylation factor 59.1 6.5 0.00022 30.8 3.0 36 6-43 36-71 (147)
19 2crw_A ARF GAP 3, ADP-ribosyla 56.2 7.7 0.00026 30.2 2.9 36 6-43 27-62 (149)
20 2p57_A GTPase-activating prote 51.2 5.7 0.00019 30.9 1.4 35 7-43 36-70 (144)
21 2g2k_A EIF-5, eukaryotic trans 47.3 2.7 9.2E-05 33.6 -1.0 30 9-38 97-127 (170)
22 3cng_A Nudix hydrolase; struct 43.9 6.2 0.00021 29.7 0.6 31 7-37 2-32 (189)
23 3sub_A ADP-ribosylation factor 42.7 13 0.00045 29.5 2.4 35 7-43 21-55 (163)
24 2e9h_A EIF-5, eukaryotic trans 41.6 4 0.00014 32.2 -0.8 30 9-38 104-134 (157)
25 3lju_X ARF-GAP with dual PH do 39.6 10 0.00035 32.8 1.4 35 7-43 33-67 (386)
26 4bbr_M Transcription initiatio 39.1 4.4 0.00015 34.8 -1.0 31 8-39 21-51 (345)
27 3k1f_M Transcription initiatio 38.5 6.5 0.00022 32.3 -0.0 33 6-39 19-51 (197)
28 3jue_A Arfgap with coiled-coil 36.5 14 0.00048 31.3 1.7 36 6-43 43-78 (368)
29 3o47_A ADP-ribosylation factor 34.7 16 0.00055 30.2 1.8 36 6-43 35-70 (329)
30 1dcq_A PYK2-associated protein 31.8 28 0.00097 27.5 2.7 36 6-43 15-50 (278)
31 2yrk_A Zinc finger homeobox pr 31.2 7.3 0.00025 26.1 -0.7 20 24-43 7-26 (55)
32 3v2d_5 50S ribosomal protein L 30.2 6.4 0.00022 26.3 -1.1 24 6-38 28-51 (60)
33 3lvq_E ARF-GAP with SH3 domain 28.8 25 0.00084 30.3 2.0 36 6-43 21-56 (497)
34 3bvo_A CO-chaperone protein HS 25.9 24 0.00081 28.2 1.3 30 4-38 6-35 (207)
35 2kgo_A Uncharacterized protein 25.4 42 0.0014 24.8 2.5 44 7-51 55-98 (108)
36 1wiz_A DNA-binding protein SAT 23.6 47 0.0016 24.3 2.4 32 128-159 62-93 (101)
37 2ds5_A CLPX, ATP-dependent CLP 22.6 79 0.0027 20.3 3.1 34 7-42 10-45 (51)
38 2zjr_Z 50S ribosomal protein L 21.7 13 0.00044 24.7 -0.9 24 6-38 28-51 (60)
39 2o4a_A DNA-binding protein SAT 21.3 59 0.002 23.4 2.5 23 137-159 61-83 (93)
40 2js4_A UPF0434 protein BB2007; 21.3 17 0.00059 24.8 -0.3 40 5-48 5-44 (70)
41 1ovx_A ATP-dependent CLP prote 21.1 78 0.0027 21.6 3.0 34 8-43 18-53 (67)
42 1nui_A DNA primase/helicase; z 21.0 24 0.00082 28.1 0.4 28 8-38 14-41 (255)
43 1yse_A DNA-binding protein SAT 20.3 51 0.0018 25.6 2.1 24 137-160 75-98 (141)
44 3l9k_W Dynein intermediate cha 20.1 43 0.0015 20.6 1.3 11 148-158 1-11 (38)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.67 E-value=3.3e-17 Score=113.81 Aligned_cols=48 Identities=31% Similarity=0.737 Sum_probs=40.8
Q ss_pred CCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccccCcccc
Q 030971 5 DSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRS 54 (168)
Q Consensus 5 ~~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~~~~ 54 (168)
......|++|+++.||+||+||+|+ +|||||||+|++ +++.+|+.+.+
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~-~~~~RP~~~~~ 51 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKL-HNINRPLTMKK 51 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHH-HSSCCCGGGCC
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHH-cCCCCCcCcCC
Confidence 4567899999999999999999996 999999997765 56678887754
No 2
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.67 E-value=2.1e-17 Score=115.62 Aligned_cols=51 Identities=41% Similarity=0.825 Sum_probs=43.4
Q ss_pred CCCCCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccccCcccc
Q 030971 2 NQNDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRS 54 (168)
Q Consensus 2 ~~~~~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~~~~ 54 (168)
++.......|++|+|++||+||+||+|+ +|||||||+| +.+++.+|+.+..
T Consensus 3 ~~~~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~-~~~~~~RP~~~k~ 53 (66)
T 4gat_A 3 NGEQNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFL-KLHGVVRPLSLKT 53 (66)
T ss_dssp TSCSSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHH-HHHCSCCCGGGCC
T ss_pred CCCCCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHH-HHcCCCCchhhcc
Confidence 3456789999999999999999999995 9999999955 5567788888754
No 3
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.66 E-value=5.7e-17 Score=106.41 Aligned_cols=44 Identities=41% Similarity=0.782 Sum_probs=38.5
Q ss_pred CCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccccCc
Q 030971 6 SNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLK 51 (168)
Q Consensus 6 ~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~ 51 (168)
.+...|++|++++||+||+||+|+ +|||||||+ .+.+++.||+.
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~-~k~~~~~RP~~ 45 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGH-YLCNACGLY-HKMNGQNRPLI 45 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHH-HHHTCSCCCCC
T ss_pred CCCCCCCCcCCCCCCcCccCCCCC-ccchHHHHH-HHHcCCCCCCC
Confidence 467899999999999999999995 999999995 56678888875
No 4
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.65 E-value=5.2e-17 Score=105.19 Aligned_cols=43 Identities=47% Similarity=0.867 Sum_probs=36.5
Q ss_pred CcccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccccCcc
Q 030971 8 LKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKK 52 (168)
Q Consensus 8 ~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~~ 52 (168)
++.|++|++++||+||+||+|+ +|||||||+ .+++++.||+.+
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~-~k~~~~~RP~~l 43 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLF-LKLHGVVRPLSL 43 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHHH-HHHHSSCCCCCC
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHHH-HHHhCCCCCCCC
Confidence 3689999999999999999995 999999995 556777887753
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.61 E-value=1.3e-16 Score=113.17 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=38.6
Q ss_pred CCCCCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccccCccccch
Q 030971 2 NQNDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRSDK 56 (168)
Q Consensus 2 ~~~~~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~~~~~~ 56 (168)
.+.++....|+||+|++||+||+|+.+..+|||||||+|+ .+++.+|+.+..+.
T Consensus 2 ~~~~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~-~~~~~RP~~~~~~~ 55 (71)
T 2kae_A 2 SHMNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQR-KYNKTRPVTAVNKY 55 (71)
T ss_dssp ------CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHH-HHHSCCCTHHHHHH
T ss_pred CCCCCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHH-HhCCCCCcccchhh
Confidence 3456788999999999999999954443489999999665 55678888876533
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.50 E-value=8.9e-15 Score=111.28 Aligned_cols=48 Identities=33% Similarity=0.749 Sum_probs=41.2
Q ss_pred CCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccccCcccc
Q 030971 5 DSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRS 54 (168)
Q Consensus 5 ~~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~~~~ 54 (168)
......|+||+|+.||+||+||+| .+||||||||| +.|++.+|+.+++
T Consensus 56 ~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~-~~~~~~rp~~~~~ 103 (115)
T 4hc9_A 56 RRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYY-KLHNINRPLTMKK 103 (115)
T ss_dssp CCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHH-HHHSSCCCGGGCC
T ss_pred ccccccCCCcCCCCcceeEECCCC-CCcchHHHHHH-HHhCCCCCccccc
Confidence 355789999999999999999999 89999999955 5567788888765
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.42 E-value=5.5e-14 Score=106.93 Aligned_cols=48 Identities=38% Similarity=0.735 Sum_probs=39.3
Q ss_pred CCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccccCcccc
Q 030971 5 DSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRS 54 (168)
Q Consensus 5 ~~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~~~~ 54 (168)
+...+.|+||+++.||+||+|++| ++||||||| |.+.+++.+|+.+++
T Consensus 2 ~~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl-~~Kl~G~nRP~~KpK 49 (115)
T 4hc9_A 2 SHMGRECVNCGATSTPLWRRDGTG-HYLCNACGL-YHKMNGQNRPLIKPK 49 (115)
T ss_dssp ----CCCTTTCCSCCSSCEECTTS-CEECHHHHH-HHHHHSSCCCCSSCC
T ss_pred CCCCCCCCCCCCccCCcceECCCC-CCcCcchhh-hhhhccccccccccc
Confidence 456789999999999999999999 899999999 667778888886643
No 8
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=71.61 E-value=1.5 Score=28.87 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=22.8
Q ss_pred CCCcccccCCCCCCCcccCCCCCCcccchHHHHHH
Q 030971 6 SNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRF 40 (168)
Q Consensus 6 ~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y 40 (168)
.....|.+|+.+. +-.....| ..+|..||+-|
T Consensus 9 l~~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl 40 (58)
T 1dl6_A 9 LPRVTCPNHPDAI--LVEDYRAG-DMICPECGLVV 40 (58)
T ss_dssp CSCCSBTTBSSSC--CEECSSSC-CEECTTTCCEE
T ss_pred cccccCcCCCCCc--eeEeCCCC-eEEeCCCCCEE
Confidence 3455799998865 33344567 78999999954
No 9
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=68.41 E-value=1.5 Score=34.25 Aligned_cols=29 Identities=24% Similarity=0.501 Sum_probs=22.5
Q ss_pred cccccCCCCCCCcccCCCCCCcccchHHHH
Q 030971 9 KYCTDCKTTKTPLWRGGPAGPKSLCNACGI 38 (168)
Q Consensus 9 ~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL 38 (168)
..|..|+.++|-+-+.+..- -.-|+|||-
T Consensus 105 VlC~~C~sPdT~L~k~~r~~-~l~C~ACGa 133 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFH-FLKCEACGA 133 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSB-CCCCSSSCC
T ss_pred EECCCCCCcCcEEEEeCCEE-EEEecCCCC
Confidence 47999999999998755322 346999996
No 10
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=65.84 E-value=0.53 Score=28.54 Aligned_cols=28 Identities=29% Similarity=0.671 Sum_probs=20.7
Q ss_pred ccccCCCCCCCcccCCCCCCcccchHHHH
Q 030971 10 YCTDCKTTKTPLWRGGPAGPKSLCNACGI 38 (168)
Q Consensus 10 ~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL 38 (168)
.|..|+.++|-+-+.+..- ..-|+|||-
T Consensus 2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~ 29 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVH-LLKCMACGA 29 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTE
T ss_pred CCcCCCCCCcEEEEeCCcE-EEEhhcCCC
Confidence 5999999999987754222 335999984
No 11
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=65.68 E-value=2.7 Score=34.11 Aligned_cols=36 Identities=25% Similarity=0.543 Sum_probs=28.8
Q ss_pred CCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhh
Q 030971 6 SNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKK 43 (168)
Q Consensus 6 ~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~ 43 (168)
.+...|.+|+... |.|-.-.-| ..+|-.|--..+..
T Consensus 40 ~~n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr~l 75 (301)
T 2b0o_E 40 PGNSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHREL 75 (301)
T ss_dssp TTTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHH
T ss_pred CCCCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHHhh
Confidence 4578999999965 899999999 89999995534443
No 12
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=63.65 E-value=3.5 Score=31.43 Aligned_cols=36 Identities=28% Similarity=0.677 Sum_probs=29.1
Q ss_pred CCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhh
Q 030971 6 SNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKK 43 (168)
Q Consensus 6 ~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~ 43 (168)
.+...|++|+... |.|-.-.-| ..+|-.|.-..+.+
T Consensus 25 p~N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~l 60 (134)
T 2iqj_A 25 EDNKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRNL 60 (134)
T ss_dssp GGGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHH
T ss_pred cCCCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhcC
Confidence 3568999999875 899999999 88999996645554
No 13
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=62.40 E-value=3.9 Score=31.46 Aligned_cols=35 Identities=26% Similarity=0.601 Sum_probs=28.4
Q ss_pred CCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhh
Q 030971 7 NLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKK 43 (168)
Q Consensus 7 ~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~ 43 (168)
+...|++|+... |.|-.-.-| ..+|-.|.-..+.+
T Consensus 35 ~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~L 69 (138)
T 2owa_A 35 ENRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRKM 69 (138)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHTT
T ss_pred CCCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhCC
Confidence 457999999875 899999999 88999997645544
No 14
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=62.23 E-value=0.91 Score=28.44 Aligned_cols=31 Identities=26% Similarity=0.642 Sum_probs=21.2
Q ss_pred CCcccccCCCCCCCcccCCCCCCcccchHHHHHH
Q 030971 7 NLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRF 40 (168)
Q Consensus 7 ~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y 40 (168)
....|.+|+.+ ++-.....| ..+|..||+-|
T Consensus 4 ~~~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESA--ELIYDPERG-EIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCC--CEEEETTTT-EEEESSSCCBC
T ss_pred ccEeCcCCCCc--ceEEcCCCC-eEECcccCCcc
Confidence 35689999874 333333346 78999999954
No 15
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=62.12 E-value=2.4 Score=36.09 Aligned_cols=32 Identities=22% Similarity=0.549 Sum_probs=22.4
Q ss_pred CCcccccCCCCCCCcccCCCCCCcccchHHHHH
Q 030971 7 NLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIR 39 (168)
Q Consensus 7 ~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~ 39 (168)
....|.+|+.+.+.+-..-..| ..+|..||+-
T Consensus 20 ~~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~V 51 (345)
T 3k7a_M 20 IVLTCPECKVYPPKIVERFSEG-DVVCALCGLV 51 (345)
T ss_dssp CCCCCSTTCCSCCCCCCCSSSC-SCCCSSSCCC
T ss_pred CCCcCcCCCCCCCceEEECCCC-CEecCCCCeE
Confidence 3568999998743232334567 7899999993
No 16
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.64 E-value=5 Score=30.82 Aligned_cols=35 Identities=31% Similarity=0.709 Sum_probs=28.3
Q ss_pred CCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhh
Q 030971 7 NLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKK 43 (168)
Q Consensus 7 ~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~ 43 (168)
+...|++|+.. .|.|-.-.-| ..+|-.|.-..+.+
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~L 62 (141)
T 2crr_A 28 DNKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNL 62 (141)
T ss_dssp GGSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHH
T ss_pred cCCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcC
Confidence 45789999986 5899998899 88999996645554
No 17
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=59.29 E-value=3.7 Score=31.54 Aligned_cols=34 Identities=24% Similarity=0.595 Sum_probs=27.5
Q ss_pred CCcccccCCCCCCCcccCCCCCCcccchHHHHHHHh
Q 030971 7 NLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRK 42 (168)
Q Consensus 7 ~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k 42 (168)
+...|++|+.. .|.|-.-.-| ..+|-.|.-..+.
T Consensus 24 ~N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~ 57 (140)
T 2olm_A 24 HNRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRG 57 (140)
T ss_dssp GGGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTT
T ss_pred CCCcCCCCCCC-CCCceeeccC-EEEchhccchhcc
Confidence 46899999986 6899999899 8899999663433
No 18
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=59.10 E-value=6.5 Score=30.77 Aligned_cols=36 Identities=25% Similarity=0.546 Sum_probs=29.3
Q ss_pred CCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhh
Q 030971 6 SNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKK 43 (168)
Q Consensus 6 ~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~ 43 (168)
.+...|++|+... |.|-.-.-| ..+|-.|.-..+.+
T Consensus 36 p~N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~L 71 (147)
T 3dwd_A 36 DENNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRGL 71 (147)
T ss_dssp TTTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHH
T ss_pred cCCCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhcC
Confidence 4568999999875 899998899 89999997645554
No 19
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.23 E-value=7.7 Score=30.22 Aligned_cols=36 Identities=31% Similarity=0.582 Sum_probs=29.0
Q ss_pred CCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhh
Q 030971 6 SNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKK 43 (168)
Q Consensus 6 ~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~ 43 (168)
.+...|++|+.. .|.|-.-.-| ..+|-.|.-..+.+
T Consensus 27 p~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~L 62 (149)
T 2crw_A 27 PTNKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRSL 62 (149)
T ss_dssp TTTSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHHH
T ss_pred cCCCcCCCCcCC-CCCcEEeccC-EEEchhcchhhccC
Confidence 356899999975 5899999899 88999996645554
No 20
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=51.16 E-value=5.7 Score=30.92 Aligned_cols=35 Identities=31% Similarity=0.567 Sum_probs=28.3
Q ss_pred CCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhh
Q 030971 7 NLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKK 43 (168)
Q Consensus 7 ~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~ 43 (168)
+...|.+|+.. .|.|-.-.-| ..+|-.|.-..+.+
T Consensus 36 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~L 70 (144)
T 2p57_A 36 TNKACFDCGAK-NPSWASITYG-VFLCIDCSGVHRSL 70 (144)
T ss_dssp GGGBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHHH
T ss_pred CCCcCCCCcCC-CCCeEEeccC-EEEhhhchHHHcCC
Confidence 56799999986 4899988889 88999997645554
No 21
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=47.33 E-value=2.7 Score=33.65 Aligned_cols=30 Identities=27% Similarity=0.631 Sum_probs=21.6
Q ss_pred cccccCCCCCCCcccCCCCCC-cccchHHHH
Q 030971 9 KYCTDCKTTKTPLWRGGPAGP-KSLCNACGI 38 (168)
Q Consensus 9 ~~C~~Cgtt~Tp~WRrGp~G~-~~LCNACGL 38 (168)
..|..|+.++|-+-+....+. ..-|+|||-
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa 127 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGY 127 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCC
Confidence 469999999999887322231 345999984
No 22
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=43.92 E-value=6.2 Score=29.68 Aligned_cols=31 Identities=23% Similarity=0.632 Sum_probs=24.7
Q ss_pred CCcccccCCCCCCCcccCCCCCCcccchHHH
Q 030971 7 NLKYCTDCKTTKTPLWRGGPAGPKSLCNACG 37 (168)
Q Consensus 7 ~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACG 37 (168)
..+.|..||+..+...-.|..+....|-.||
T Consensus 2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 2 HMKFCSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp -CCBCTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred CcccCchhCCccccccccCCCCcceECCCCC
Confidence 3578999999998776667666667899998
No 23
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=42.69 E-value=13 Score=29.51 Aligned_cols=35 Identities=29% Similarity=0.531 Sum_probs=28.3
Q ss_pred CCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhh
Q 030971 7 NLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKK 43 (168)
Q Consensus 7 ~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~ 43 (168)
+...|++|+.. -|.|-.-.-| ..+|-.|.-..+.+
T Consensus 21 ~N~~CaDCga~-~P~WaS~nlG-vflCi~CSGiHR~L 55 (163)
T 3sub_A 21 SNNKCFDCGIS-NPDWVSVNHG-IFLCINCSGVHRSL 55 (163)
T ss_dssp GGGBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHT
T ss_pred CCCccccCCCC-CCCeEEecCC-eeEHHhhhHHhcCC
Confidence 46799999996 6899999899 89999996535543
No 24
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.62 E-value=4 Score=32.19 Aligned_cols=30 Identities=27% Similarity=0.631 Sum_probs=21.6
Q ss_pred cccccCCCCCCCcccCCCCCC-cccchHHHH
Q 030971 9 KYCTDCKTTKTPLWRGGPAGP-KSLCNACGI 38 (168)
Q Consensus 9 ~~C~~Cgtt~Tp~WRrGp~G~-~~LCNACGL 38 (168)
..|..|+.++|-+-+....+- ..-|+|||-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa 134 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGY 134 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCC
Confidence 579999999999876222221 345999996
No 25
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=39.59 E-value=10 Score=32.76 Aligned_cols=35 Identities=26% Similarity=0.557 Sum_probs=27.9
Q ss_pred CCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhh
Q 030971 7 NLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKK 43 (168)
Q Consensus 7 ~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~ 43 (168)
+...|++|+.. .|.|-.-.-| ..+|-.|.-..+.+
T Consensus 33 ~N~~C~dC~~~-~p~w~s~~~g-~~~C~~Csg~hr~l 67 (386)
T 3lju_X 33 GNARCADCGAP-DPDWASYTLG-VFICLSCSGIHRNI 67 (386)
T ss_dssp GGSBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHTC
T ss_pred CCCcCccCCCC-CCCeEEeccc-EEEhhhhchHhhCC
Confidence 45689999997 7899999899 88999996534443
No 26
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=39.12 E-value=4.4 Score=34.79 Aligned_cols=31 Identities=23% Similarity=0.596 Sum_probs=20.6
Q ss_pred CcccccCCCCCCCcccCCCCCCcccchHHHHH
Q 030971 8 LKYCTDCKTTKTPLWRGGPAGPKSLCNACGIR 39 (168)
Q Consensus 8 ~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~ 39 (168)
...|.+|+...+-+--+-..| .++|..||+-
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G-~~vC~~CGlV 51 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLV 51 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGT-EEEETTTCBE
T ss_pred CCcCCCCCCCCCceeEECCCC-cEEeCCCCCC
Confidence 457999997333333333567 7899999983
No 27
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=38.52 E-value=6.5 Score=32.25 Aligned_cols=33 Identities=21% Similarity=0.541 Sum_probs=22.2
Q ss_pred CCCcccccCCCCCCCcccCCCCCCcccchHHHHH
Q 030971 6 SNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIR 39 (168)
Q Consensus 6 ~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~ 39 (168)
.....|..|+...+-+--.-..| ..+|..||+-
T Consensus 19 n~~~~CPECGs~~t~IV~D~erG-E~VCsdCGLV 51 (197)
T 3k1f_M 19 NIVLTCPECKVYPPKIVERFSEG-DVVCALCGLV 51 (197)
T ss_dssp CCCCCCTTTCCSSCCEEEEGGGT-EEEETTTCBB
T ss_pred ccCeECcCCCCcCCeEEEeCCCC-EEEEcCCCCC
Confidence 44568999998543232223356 7899999983
No 28
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=36.51 E-value=14 Score=31.30 Aligned_cols=36 Identities=28% Similarity=0.602 Sum_probs=29.0
Q ss_pred CCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhh
Q 030971 6 SNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKK 43 (168)
Q Consensus 6 ~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~ 43 (168)
.....|.+|+.. .|.|-.-.-| ..+|-.|.=..+.+
T Consensus 43 ~~n~~c~dc~~~-~p~w~s~~~g-~~~c~~c~~~hr~l 78 (368)
T 3jue_A 43 DGNAQCCDCREP-APEWASINLG-VTLCIQCSGIHRSL 78 (368)
T ss_dssp TTTTBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHH
T ss_pred CCcCcCCCCCCC-CCCeEEecCC-eEEcHhHHHHHhcc
Confidence 456899999985 6899999899 89999996535554
No 29
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=34.74 E-value=16 Score=30.16 Aligned_cols=36 Identities=25% Similarity=0.543 Sum_probs=28.5
Q ss_pred CCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhh
Q 030971 6 SNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKK 43 (168)
Q Consensus 6 ~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~ 43 (168)
.+...|++|+.. .|.|-.-.-| -.+|-.|.-..+.+
T Consensus 35 ~~n~~c~dc~~~-~~~~~~~~~~-~~~c~~c~~~hr~~ 70 (329)
T 3o47_A 35 DENNVCFECGAF-NPQWVSVTYG-IWICLECSGRHRGL 70 (329)
T ss_dssp TTTTBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHHH
T ss_pred CCCCcCCCCCCC-CCCeEEecCC-EEEChhhhhhhccc
Confidence 456789999985 5789988889 88999996545554
No 30
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=31.84 E-value=28 Score=27.55 Aligned_cols=36 Identities=25% Similarity=0.552 Sum_probs=28.5
Q ss_pred CCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhh
Q 030971 6 SNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKK 43 (168)
Q Consensus 6 ~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~ 43 (168)
.+...|.+|+... |.|-.-.-| ..+|-.|--..+..
T Consensus 15 ~~n~~c~dc~~~~-p~w~s~~~g-~~~c~~c~~~hr~l 50 (278)
T 1dcq_A 15 TGNDVCCDCGAPD-PTWLSTNLG-ILTCIECSGIHREL 50 (278)
T ss_dssp TTTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHH
T ss_pred CCCCcCCCCCCCC-CCeEEecCC-eEEcHHHHHHHhhc
Confidence 3567899999974 699999999 78999995545554
No 31
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=31.16 E-value=7.3 Score=26.08 Aligned_cols=20 Identities=35% Similarity=1.039 Sum_probs=15.6
Q ss_pred CCCCCCcccchHHHHHHHhh
Q 030971 24 GGPAGPKSLCNACGIRFRKK 43 (168)
Q Consensus 24 rGp~G~~~LCNACGL~y~k~ 43 (168)
.+|+||.+-|.-||..|-.+
T Consensus 7 ~~~~~P~~eC~lC~vkYs~r 26 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSAR 26 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCSS
T ss_pred CCCCCCCccccccCcccccc
Confidence 47889889999999866443
No 32
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=30.15 E-value=6.4 Score=26.30 Aligned_cols=24 Identities=38% Similarity=0.998 Sum_probs=16.9
Q ss_pred CCCcccccCCCCCCCcccCCCCCCcccchHHHH
Q 030971 6 SNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGI 38 (168)
Q Consensus 6 ~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL 38 (168)
..+-.|.+||...-| +.+|..||.
T Consensus 28 p~l~~c~~cGe~~~~---------H~vc~~CG~ 51 (60)
T 3v2d_5 28 PTLVPCPECKAMKPP---------HTVCPECGY 51 (60)
T ss_dssp CCCEECTTTCCEECT---------TSCCTTTCE
T ss_pred CceeECCCCCCeecc---------eEEcCCCCc
Confidence 346678888875443 568999994
No 33
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=28.75 E-value=25 Score=30.27 Aligned_cols=36 Identities=25% Similarity=0.529 Sum_probs=27.7
Q ss_pred CCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhh
Q 030971 6 SNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKK 43 (168)
Q Consensus 6 ~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~ 43 (168)
.+...|.+|+. .-|.|-.-.-| -.+|-.|.=..+..
T Consensus 21 ~~n~~c~dc~~-~~p~w~s~~~~-~~~c~~c~~~hr~l 56 (497)
T 3lvq_E 21 PGNSQCCDCGA-ADPTWLSTNLG-VLTCIQCSGVHREL 56 (497)
T ss_dssp TTTTBCTTTCC-BSCCEEETTTT-EEECHHHHHHHHHH
T ss_pred CCCCcccCCCC-CCCCEEEechh-HHhHHhhHHHHHhh
Confidence 45678999996 56799998889 88999995434443
No 34
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=25.86 E-value=24 Score=28.23 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=17.4
Q ss_pred CCCCCcccccCCCCCCCcccCCCCCCcccchHHHH
Q 030971 4 NDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGI 38 (168)
Q Consensus 4 ~~~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL 38 (168)
.......|.+|+....+. .+...+|..|+.
T Consensus 6 ~~~~~~~Cw~C~~~~~~~-----~~~~~fC~~c~~ 35 (207)
T 3bvo_A 6 AGSNYPRCWNCGGPWGPG-----REDRFFCPQCRA 35 (207)
T ss_dssp -----CBCSSSCCBCCSS-----CSCCCBCTTTCC
T ss_pred cCCCCCCCCCCCCCcccc-----cccccccccccc
Confidence 344567899999764332 344678999963
No 35
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=25.43 E-value=42 Score=24.83 Aligned_cols=44 Identities=23% Similarity=0.465 Sum_probs=32.2
Q ss_pred CCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccccCc
Q 030971 7 NLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLK 51 (168)
Q Consensus 7 ~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~ 51 (168)
....|..|+-......+..-.+ ..+|-.|--.+-+..+....++
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~-a~~Cv~Cq~~~E~~~k~~~~~n 98 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPG-VRLCIHCQQEKDLQKPAYTGYN 98 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTT-CCSCHHHHHHHHHHCCSCCCCC
T ss_pred cCceecccCCcccHHHHhcCCC-ccccHHHHHHHHHHHHhhcccC
Confidence 4679999999988776655555 5699999887776665444443
No 36
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=23.58 E-value=47 Score=24.34 Aligned_cols=32 Identities=19% Similarity=0.088 Sum_probs=23.8
Q ss_pred CCCCchhHHHHHHHHHHHhhhhHHHHHHHHHH
Q 030971 128 PSLFLPSVVAKKQRCQRKRKLKEEEQAAFSLM 159 (168)
Q Consensus 128 ~~~~~~~~~~~~~r~~~~~~~~eee~aa~~lm 159 (168)
|..-+-+--+-=.||..|=+|.|+||..||=+
T Consensus 62 PW~~L~~Gre~f~RM~nWL~l~e~eR~eIl~~ 93 (101)
T 1wiz_A 62 PRTASQSLLVNLRAMQNFLNLPEVERDRIYQD 93 (101)
T ss_dssp TTTCCHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 33334455566679999999999999998754
No 37
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=22.60 E-value=79 Score=20.27 Aligned_cols=34 Identities=24% Similarity=0.586 Sum_probs=22.4
Q ss_pred CCcccccCCCCCCCcc--cCCCCCCcccchHHHHHHHh
Q 030971 7 NLKYCTDCKTTKTPLW--RGGPAGPKSLCNACGIRFRK 42 (168)
Q Consensus 7 ~~~~C~~Cgtt~Tp~W--RrGp~G~~~LCNACGL~y~k 42 (168)
....|+-||-+....= =.|| | .++||.|.-....
T Consensus 10 ~~~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~~~~ 45 (51)
T 2ds5_A 10 KLLYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLCND 45 (51)
T ss_dssp CCCBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHHHHH
T ss_pred CCcEecCCCCCHHHhcccCCCC-C-CEehHHHHHHHHH
Confidence 3468999998775431 1344 3 5799999865443
No 38
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=21.66 E-value=13 Score=24.75 Aligned_cols=24 Identities=33% Similarity=0.866 Sum_probs=17.0
Q ss_pred CCCcccccCCCCCCCcccCCCCCCcccchHHHH
Q 030971 6 SNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGI 38 (168)
Q Consensus 6 ~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL 38 (168)
..+..|.+||...-| +.+|..||.
T Consensus 28 p~l~~c~~cG~~~~p---------H~vc~~CG~ 51 (60)
T 2zjr_Z 28 PNLTECPQCHGKKLS---------HHICPNCGY 51 (60)
T ss_dssp CCCEECTTTCCEECT---------TBCCTTTCB
T ss_pred CCceECCCCCCEeCC---------ceEcCCCCc
Confidence 355678888876433 669999994
No 39
>2o4a_A DNA-binding protein SATB1; protein-DNA complex, transcription, transcription/DNA complex; HET: DNA; 1.75A {Homo sapiens} SCOP: a.35.1.7 PDB: 2o49_A*
Probab=21.33 E-value=59 Score=23.37 Aligned_cols=23 Identities=17% Similarity=0.053 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Q 030971 137 AKKQRCQRKRKLKEEEQAAFSLM 159 (168)
Q Consensus 137 ~~~~r~~~~~~~~eee~aa~~lm 159 (168)
+-=.||..|=+|.|+||..||=+
T Consensus 61 e~f~rM~nWL~l~e~eR~eil~~ 83 (93)
T 2o4a_A 61 VNLRAMQNFLQLPEAERDRIYQD 83 (93)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 44568999999999999998743
No 40
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=21.31 E-value=17 Score=24.77 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=25.1
Q ss_pred CCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccc
Q 030971 5 DSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFE 48 (168)
Q Consensus 5 ~~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~ 48 (168)
=-+...|-.|+.. +--....| ..+|.+||+.|-=.-+.+.
T Consensus 5 LL~iL~CP~ck~~---L~~~~~~~-~LiC~~cg~~YPI~dGIPv 44 (70)
T 2js4_A 5 LLDILVCPVCKGR---LEFQRAQA-ELVCNADRLAFPVRDGVPI 44 (70)
T ss_dssp CCCCCBCTTTCCB---EEEETTTT-EEEETTTTEEEEEETTEEC
T ss_pred HhhheECCCCCCc---CEEeCCCC-EEEcCCCCceecCCCCeee
Confidence 3466789999883 32222345 6789999996654444433
No 41
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=21.12 E-value=78 Score=21.60 Aligned_cols=34 Identities=24% Similarity=0.557 Sum_probs=23.1
Q ss_pred CcccccCCCCCCCcc--cCCCCCCcccchHHHHHHHhh
Q 030971 8 LKYCTDCKTTKTPLW--RGGPAGPKSLCNACGIRFRKK 43 (168)
Q Consensus 8 ~~~C~~Cgtt~Tp~W--RrGp~G~~~LCNACGL~y~k~ 43 (168)
...|+-||-+....= =.|| | .++||.|.-....+
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~c~~I 53 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLCNDI 53 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCC-C-CChhHHHHHHHHHH
Confidence 468999998875431 2344 4 58999998755554
No 42
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=21.04 E-value=24 Score=28.09 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=20.1
Q ss_pred CcccccCCCCCCCcccCCCCCCcccchHHHH
Q 030971 8 LKYCTDCKTTKTPLWRGGPAGPKSLCNACGI 38 (168)
Q Consensus 8 ~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL 38 (168)
...|..|+.+.. .|-- .+| ...|+.||-
T Consensus 14 ~~~CP~Cg~~d~-~~~~-~dg-~~~C~~Cg~ 41 (255)
T 1nui_A 14 HIPCDNCGSSDG-NSLF-SDG-HTFCYVCEK 41 (255)
T ss_dssp EECCSSSCCSSC-EEEE-TTS-CEEETTTCC
T ss_pred CCcCCCCCCCCC-ceEe-CCC-CeecccCCC
Confidence 458999998754 5533 356 579999984
No 43
>1yse_A DNA-binding protein SATB1; all helical, DNA-binding domain, T-cell development; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=20.26 E-value=51 Score=25.58 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHh
Q 030971 137 AKKQRCQRKRKLKEEEQAAFSLMA 160 (168)
Q Consensus 137 ~~~~r~~~~~~~~eee~aa~~lma 160 (168)
+-=+||..|=+|.|+||..+|=|.
T Consensus 75 E~fiRM~NWL~Lpe~eR~eIl~~e 98 (141)
T 1yse_A 75 VNLRAMQNFLQLPEAERDRIYQDE 98 (141)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344789999999999999998765
No 44
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=20.05 E-value=43 Score=20.62 Aligned_cols=11 Identities=36% Similarity=0.510 Sum_probs=8.9
Q ss_pred hhHHHHHHHHH
Q 030971 148 LKEEEQAAFSL 158 (168)
Q Consensus 148 ~~eee~aa~~l 158 (168)
|+|||+.+|+.
T Consensus 1 LseEEk~~I~~ 11 (38)
T 3l9k_W 1 LSEEQKQMIIL 11 (38)
T ss_dssp CCHHHHHHHHT
T ss_pred CCHHHHHHHhc
Confidence 68999988863
Done!