BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030972
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L7T|A Chain A, Crystal Structure Of Smu.1112c
pdb|3L7T|B Chain B, Crystal Structure Of Smu.1112c
pdb|3L7T|C Chain C, Crystal Structure Of Smu.1112c
pdb|3L7T|D Chain D, Crystal Structure Of Smu.1112c
Length = 134
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 12/134 (8%)
Query: 9 LHLKSVNHVSLVCRNISESIDFYQNVLGFVPIR---RPGSFNFDGAWLFGHGIGIHLLQS 65
+ LK+V+HV+L+ + +S +FY N LGF IR RP ++ G I + + +
Sbjct: 1 MKLKAVHHVALIVSDYDKSYEFYVNQLGFEVIRENHRPKRHDYKLDLKCG-DIELEIFGN 59
Query: 66 ENPDS---LPKKSVINPKD----NHLSFQCESVGNVEKFLKEMGIKYVRALVEEGGILVE 118
+ DS P + + P++ HL+F E V + L +GI+ V + + +
Sbjct: 60 KLTDSNYCAPPERISWPREACGLRHLAFYVEDVEASRQELIALGIR-VEEVRYDDYTGKK 118
Query: 119 QLFFHDPDGFMIEI 132
FF DPDG +E+
Sbjct: 119 MAFFFDPDGLPLEL 132
>pdb|3HNQ|A Chain A, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|B Chain B, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|C Chain C, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|D Chain D, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
Length = 144
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDS 70
+ ++H+ L +IS +I FY+ VLGF + +F + L I+L Q E +
Sbjct: 21 IDRIDHLVLTVSDISTTIRFYEEVLGFSAV----TFKQNRKALIFGAQKINLHQQEX-EF 75
Query: 71 LPKKSVINPKDNHLSFQCES-VGNVEKFLKEMGIKYVRALVEEGGIL--VEQLFFHDPDG 127
PK S P L F + + +V + + GI V VE G + ++ DPDG
Sbjct: 76 EPKASRPTPGSADLCFITSTPINDVVSEILQAGISIVEGPVERTGATGEIXSIYIRDPDG 135
Query: 128 FMIEIC 133
+IEI
Sbjct: 136 NLIEIS 141
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDS 70
+ ++H+ L +IS +I FY+ VLGF + +F + L I+L Q E +
Sbjct: 21 IDRIDHLVLTVSDISTTIRFYEEVLGFSAV----TFKQNRKALIFGAQKINLHQQEM-EF 75
Query: 71 LPKKSVINPKDNHLSFQCES-VGNVEKFLKEMGIKYVRALVEEGGILVE--QLFFHDPDG 127
PK S P L F + + +V + + GI V VE G E ++ DPDG
Sbjct: 76 EPKASRPTPGSADLCFITSTPINDVVSEILQAGISIVEGPVERTGATGEIMSIYIRDPDG 135
Query: 128 FMIEIC 133
+IEI
Sbjct: 136 NLIEIS 141
>pdb|3GHJ|A Chain A, Crystal Structure From The Mobile Metagenome Of Halifax
Harbour Sewage Outfall: Integron Cassette Protein
Hfx_cass4
Length = 141
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 6 GNPLHLKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQS 65
G P ++K + V++ +N+ +S FY +LGF + ++ W+ G G +LQ
Sbjct: 21 GVPXNIKGLFEVAVKVKNLEKSSQFYTEILGFEAGLLDSARRWNFLWVSGRA-GXVVLQE 79
Query: 66 ENPDSLPKKSVINPKDNHLSFQCES--VGNVEKFLKEMGIKYVRALVEEGGILVEQLFFH 123
E N + H SF+ E + ++K L+ G+ V V + L+F
Sbjct: 80 EKE---------NWQQQHFSFRVEKSEIEPLKKALESKGVS-VHGPVNQEWXQAVSLYFA 129
Query: 124 DPDGFMIEIC 133
DP+G +E
Sbjct: 130 DPNGHALEFT 139
>pdb|3EY7|A Chain A, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass1
pdb|3EY7|B Chain B, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass1
Length = 133
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 12/132 (9%)
Query: 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWL-FGH-GIGIHLLQSENP 68
+ ++H+ L +I + +FY+ VLG + SF L FGH I +H L +E
Sbjct: 8 ISHLDHLVLTVADIPTTTNFYEKVLGXKAV----SFGAGRIALEFGHQKINLHQLGNEFE 63
Query: 69 DSLPKKSVINPKDNHLSFQCESV-GNVEKFLKEMGIKYVRALVEEGGI--LVEQLFFHDP 125
PK + L F ++V + K +++ G+ V+ G + +F DP
Sbjct: 64 ---PKAQNVRVGSADLCFITDTVLSDAXKHVEDQGVTIXEGPVKRTGAQGAITSFYFRDP 120
Query: 126 DGFMIEICDCDN 137
DG +IE+ N
Sbjct: 121 DGNLIEVSTYSN 132
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 28/154 (18%)
Query: 14 VNHVSLVCRNISESIDFYQNVLGFVPIRR---------------------PGSFNFDGAW 52
+ L ++ +S+DFY VLG +++ P + AW
Sbjct: 32 LQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAW 91
Query: 53 LFGHGIGIHLLQSENPDSLPKKSVINPKDN-----HLSFQCESVGNVEKFLKEMGIKYVR 107
F + L + + +S N + H+ V + K +E+G+K+V+
Sbjct: 92 TFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 151
Query: 108 ALVEEGGILVEQLFFHDPDGFMIEICDCDNLPVV 141
+ G + F DPDG+ IEI + + + +
Sbjct: 152 K--PDDGKMKGLAFIQDPDGYWIEILNPNKIATI 183
>pdb|1NPB|A Chain A, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|B Chain B, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|C Chain C, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|D Chain D, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|E Chain E, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|F Chain F, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
Length = 141
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDS 70
L+S+NH++L ++ +S+ F+ +LG R + GA+L + + L E
Sbjct: 2 LQSLNHLTLAVSDLQKSVTFWHELLGLTLHARWNT----GAYLTCGDLWVCLSYDEARQY 57
Query: 71 LPKKSVINPKDNHLSFQC--ESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGF 128
+P + H +F E + + L++ G+ + EG +F DPDG
Sbjct: 58 VPPQ---ESDYTHYAFTVAEEDFEPLSQRLEQAGVTIWKQNKSEGA----SFYFLDPDGH 110
Query: 129 MIEI 132
+E+
Sbjct: 111 KLEL 114
>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
From Enterococcus Faecalis
Length = 126
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 12/130 (9%)
Query: 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIR---RPGSFNFDGAWLFGHGIGIHLLQSEN 67
K ++HV++ N + +FY LGF +R RP + +G L+
Sbjct: 3 FKEIHHVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIK----LDLKLGSQELEIFI 58
Query: 68 PDSLPKKSVINPKD---NHLSFQCESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHD 124
D P + P+ HL+F+ E + V FL E GI+ L + + FF D
Sbjct: 59 SDQFPARPSY-PEALGLRHLAFKVEHIEEVIAFLNEQGIE-TEPLRVDDFTGKKXTFFFD 116
Query: 125 PDGFMIEICD 134
PDG +E+ +
Sbjct: 117 PDGLPLELHE 126
>pdb|4IR0|A Chain A, Crystal Structure Of Metallothiol Transferase Fosb 2
From Bacillus Anthracis Str. Ames
pdb|4IR0|B Chain B, Crystal Structure Of Metallothiol Transferase Fosb 2
From Bacillus Anthracis Str. Ames
Length = 148
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 11 LKSVNHVSLVCRNISESIDFYQNVLG---FVPIRRPGSFNFDGAWL 53
L+ +NH+ N+ +SI+FYQ +L V R+ F+ +G W+
Sbjct: 3 LQGINHICFSVSNLEKSIEFYQKILQAKLLVKGRKLAYFDLNGLWI 48
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 28/154 (18%)
Query: 14 VNHVSLVCRNISESIDFYQNVLGFVPIRR---------------------PGSFNFDGAW 52
+ L ++ +S+DFY VLG I++ P + AW
Sbjct: 35 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 94
Query: 53 LFGHGIGIHLLQSENPDSLPKKSVINPKDN-----HLSFQCESVGNVEKFLKEMGIKYVR 107
+ L + + +S N + H+ V + K +E+G+K+V+
Sbjct: 95 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 154
Query: 108 ALVEEGGILVEQLFFHDPDGFMIEICDCDNLPVV 141
+ G + F DPDG+ IEI + + + +
Sbjct: 155 K--PDDGKMKGLAFIQDPDGYWIEILNPNKMATL 186
>pdb|3EY8|A Chain A, Structure From The Mobile Metagenome Of V. Pseudocholerae.
Vpc_cass1
pdb|3EY8|B Chain B, Structure From The Mobile Metagenome Of V. Pseudocholerae.
Vpc_cass1
Length = 133
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGH-GIGIHLLQSENPD 69
+ ++H+ L +I + FY+ VLG + GS A FGH I +H L E
Sbjct: 8 ISHLDHLVLTVADIPTTTKFYEKVLGXKAVSF-GSGRI--ALEFGHQKINLHQLGHEFE- 63
Query: 70 SLPKKSVINPKDNHLSFQCE-SVGNVEKFLKEMGIKYVRALVEEGGI--LVEQLFFHDPD 126
PK + L F + + + ++++ G+ V+ G + +F DPD
Sbjct: 64 --PKAQNVRTGSADLCFITDIDLSDAXEYVENQGVVIXEGPVKRTGAQGAITSFYFRDPD 121
Query: 127 GFMIEICDCDN 137
G +IE+ N
Sbjct: 122 GNLIEVSTYSN 132
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 28/145 (19%)
Query: 14 VNHVSLVCRNISESIDFYQNVLGFVPIRR---------------------PGSFNFDGAW 52
+ L ++ +S+DFY VLG I++ P + AW
Sbjct: 31 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 90
Query: 53 LFGHGIGIHLLQSENPDSLPKKSVINPKDN-----HLSFQCESVGNVEKFLKEMGIKYVR 107
+ L + + +S N + H+ V + K +E+G+K+V+
Sbjct: 91 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 150
Query: 108 ALVEEGGILVEQLFFHDPDGFMIEI 132
+ G + F DPDG+ IEI
Sbjct: 151 K--PDDGKMKGLAFIQDPDGYWIEI 173
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 28/145 (19%)
Query: 14 VNHVSLVCRNISESIDFYQNVLGFVPIRR---------------------PGSFNFDGAW 52
+ L ++ +S+DFY VLG I++ P + AW
Sbjct: 31 LQETMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 90
Query: 53 LFGHGIGIHLLQSENPDSLPKKSVINPKDN-----HLSFQCESVGNVEKFLKEMGIKYVR 107
+ L + + +S N + H+ V + K +E+G+K+V+
Sbjct: 91 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 150
Query: 108 ALVEEGGILVEQLFFHDPDGFMIEI 132
+ G + F DPDG+ I+I
Sbjct: 151 K--PDDGKMKGLAFIQDPDGYWIQI 173
>pdb|2P7Q|A Chain A, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
pdb|2P7Q|B Chain B, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
pdb|2P7Q|C Chain C, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
pdb|2P7Q|D Chain D, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
pdb|2P7Q|E Chain E, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
pdb|2P7Q|F Chain F, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
Length = 133
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 64/129 (49%), Gaps = 18/129 (13%)
Query: 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGA---WLFGHGIGIHLLQSEN 67
+ ++H++L+ ++++++ F QN+ I G F + + G+ I +++
Sbjct: 2 ISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSGDKTFSLSKEKFFLIAGLWICIMEG-- 59
Query: 68 PDSLPKKSVINPKDNHLSFQCES--VGNVEKFLKEMGI--KYVRALVEEGGILVEQLFFH 123
DSL +++ NH++FQ +S V + +K +G+ K R V+ G ++F+
Sbjct: 60 -DSLQERTY-----NHIAFQIQSEEVDEYTERIKALGVEMKPERPRVQGEG---RSIYFY 110
Query: 124 DPDGFMIEI 132
D D + E+
Sbjct: 111 DFDNHLFEL 119
>pdb|2P7K|A Chain A, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
(Hexagonal Form)
pdb|2P7K|B Chain B, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
(Hexagonal Form)
pdb|2P7L|A Chain A, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 5.75
pdb|2P7L|B Chain B, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 5.75
pdb|2P7L|C Chain C, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 5.75
pdb|2P7L|D Chain D, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 5.75
pdb|2P7L|E Chain E, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 5.75
pdb|2P7L|F Chain F, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 5.75
pdb|2P7M|A Chain A, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 6.5
pdb|2P7M|B Chain B, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 6.5
pdb|2P7M|C Chain C, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 6.5
pdb|2P7M|D Chain D, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 6.5
pdb|2P7M|E Chain E, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 6.5
pdb|2P7M|F Chain F, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 6.5
pdb|2P7O|A Chain A, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
(Tetragonal Form)
pdb|2P7O|B Chain B, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
(Tetragonal Form)
pdb|2P7P|A Chain A, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
Complexed With Mn(Ii) And Sulfate Ion
pdb|2P7P|B Chain B, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
Complexed With Mn(Ii) And Sulfate Ion
pdb|2P7P|C Chain C, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
Complexed With Mn(Ii) And Sulfate Ion
pdb|2P7P|D Chain D, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
Complexed With Mn(Ii) And Sulfate Ion
pdb|2P7P|E Chain E, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
Complexed With Mn(Ii) And Sulfate Ion
pdb|2P7P|F Chain F, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
Complexed With Mn(Ii) And Sulfate Ion
Length = 133
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 64/129 (49%), Gaps = 18/129 (13%)
Query: 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGA---WLFGHGIGIHLLQSEN 67
+ ++H++L+ ++++++ F QN+ I G F + + G+ I +++
Sbjct: 2 ISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSGDKTFSLSKEKFFLIAGLWICIMEG-- 59
Query: 68 PDSLPKKSVINPKDNHLSFQCES--VGNVEKFLKEMGI--KYVRALVEEGGILVEQLFFH 123
DSL +++ NH++FQ +S V + +K +G+ K R V+ G ++F+
Sbjct: 60 -DSLQERTY-----NHIAFQIQSEEVDEYTERIKALGVEMKPERPRVQGEG---RSIYFY 110
Query: 124 DPDGFMIEI 132
D D + E+
Sbjct: 111 DFDNHLFEL 119
>pdb|2RK0|A Chain A, Crystal Structure Of GlyoxylaseBLEOMYCIN RESISTANCE
ProteinDIOXYGENASE DOMAIN FROM FRANKIA SP. EAN1PEC
pdb|2RK0|B Chain B, Crystal Structure Of GlyoxylaseBLEOMYCIN RESISTANCE
ProteinDIOXYGENASE DOMAIN FROM FRANKIA SP. EAN1PEC
Length = 136
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 24/142 (16%)
Query: 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGI---GIHL-LQSE 66
L V+HVSL R++ S +Y +L + + R F HG+ G+ + L+
Sbjct: 3 LSGVSHVSLTVRDLDISCRWYTEILDWKELVRGRGDTTS----FAHGVLPGGLSIVLREH 58
Query: 67 NPDSLPKKSVINPKDNHLSFQCESVGN---VEKFLKEMGIKYVRALVEEGGILVEQLFFH 123
+ P +HLSF ES + +E+ L + G + ++L
Sbjct: 59 DGGGTDLFDETRPGLDHLSFSVESXTDLDVLEERLAKAGAAFTP---------TQEL--- 106
Query: 124 DPDGFMIEICDCDNLPVVPLVG 145
P G+++ D DN+ + +G
Sbjct: 107 -PFGWILAFRDADNIALEAXLG 127
>pdb|1ZSW|A Chain A, Crystal Structure Of Bacillus Cereus Metallo Protein
From Glyoxalase Family
Length = 338
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIR 41
+K +H+S+V +N +E+ FY+NVLG ++
Sbjct: 28 IKGHHHISMVTKNANENNHFYKNVLGLRRVK 58
>pdb|3K17|A Chain A, Crystal Structure Of A Lin0012 Protein From Listeria
Innocua
pdb|3K17|B Chain B, Crystal Structure Of A Lin0012 Protein From Listeria
Innocua
pdb|3K17|C Chain C, Crystal Structure Of A Lin0012 Protein From Listeria
Innocua
pdb|3K17|D Chain D, Crystal Structure Of A Lin0012 Protein From Listeria
Innocua
Length = 365
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 66 ENPDSLPKKSVINPKDNHLSFQCESVGNVEKFLKEMGIK 104
ENP S P + P H +F E++ FLK GI+
Sbjct: 57 ENPVSWPIGGELKPDGEHWTFTAEAINIATTFLKSEGIE 95
>pdb|1LQK|A Chain A, High Resolution Structure Of Fosfomycin Resistance
Protein A (Fosa)
pdb|1LQK|B Chain B, High Resolution Structure Of Fosfomycin Resistance
Protein A (Fosa)
pdb|1LQO|A Chain A, Crystal Strutcure Of The Fosfomycin Resistance Protein A
(Fosa) Containing Bound Thallium Cations
pdb|1LQO|B Chain B, Crystal Strutcure Of The Fosfomycin Resistance Protein A
(Fosa) Containing Bound Thallium Cations
pdb|1LQP|A Chain A, Crystal Structure Of The Fosfomycin Resistance Protein
(Fosa) Containing Bound Substrate
pdb|1LQP|B Chain B, Crystal Structure Of The Fosfomycin Resistance Protein
(Fosa) Containing Bound Substrate
pdb|1NKI|A Chain A, Crystal Strucure Of The Fosfomycin Resistance Protein A
(Fosa) Containing Bound Phosphonoformate
pdb|1NKI|B Chain B, Crystal Strucure Of The Fosfomycin Resistance Protein A
(Fosa) Containing Bound Phosphonoformate
pdb|1NNR|A Chain A, Crystal Structure Of A Probable Fosfomycin Resistance
Protein (Pa1129) From Pseudomonas Aeruginosa With
Sulfate Present In The Active Site
pdb|1NNR|B Chain B, Crystal Structure Of A Probable Fosfomycin Resistance
Protein (Pa1129) From Pseudomonas Aeruginosa With
Sulfate Present In The Active Site
Length = 135
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 11 LKSVNHVSLVCRNISESIDFYQNVLGF 37
L +NH++L ++ SI FY+++LGF
Sbjct: 2 LTGLNHLTLAVADLPASIAFYRDLLGF 28
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
Query: 16 HVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLF-GHG-----IGIHLLQSENPD 69
H L ++ SIDFY VLG +R + + + F G+G I L + D
Sbjct: 5 HTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVD 64
Query: 70 SLPKKSVINPKDNHLSFQCESVGNVEKFLKEMGIKYVR-ALVEEGGILVEQLFFHDPDGF 128
K + H++ ++ + +++ G R A +GG V F DPDG+
Sbjct: 65 ----KYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTV-IAFVEDPDGY 119
Query: 129 MIEICD 134
IE+ +
Sbjct: 120 KIELIE 125
>pdb|2ZI8|A Chain A, Crystal Structure Of The Hsac Extradiol Dioxygenase From
M. Tuberculosis In Complex With 3,4-Dihydroxy-9,10-
Seconandrost-1,3,5(10)-Triene-9,17-Dione (Dhsa)
pdb|2ZI8|B Chain B, Crystal Structure Of The Hsac Extradiol Dioxygenase From
M. Tuberculosis In Complex With 3,4-Dihydroxy-9,10-
Seconandrost-1,3,5(10)-Triene-9,17-Dione (Dhsa)
pdb|2ZYQ|A Chain A, Crystal Structure Of The Hsac Extradiol Dioxygenase From
M. Tuberculosis
pdb|2ZYQ|B Chain B, Crystal Structure Of The Hsac Extradiol Dioxygenase From
M. Tuberculosis
Length = 300
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 12 KSVNHVSLVCRNISESIDFYQNVLGF 37
+ + HV L R+ +E++ FY++VLGF
Sbjct: 141 QGMGHVVLSTRDDAEALHFYRDVLGF 166
>pdb|1JC5|A Chain A, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|B Chain B, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|C Chain C, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|D Chain D, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|E Chain E, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|F Chain F, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
Length = 148
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 14/134 (10%)
Query: 14 VNHVSLVCRNISESIDFYQNVLGFVPIRRPGS--------FNFDGAWLFGHGIGIHLLQS 65
++HV+ C + E+ +YQ G+ + R + A L H + ++
Sbjct: 10 IDHVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIMMAPAAKLTEHMTQVQVMAP 69
Query: 66 ENPDSLPKKSVINPKD----NHLSFQCESVGNVEKFLKEMGIK--YVRALVEEGGILVEQ 119
N +S K + +H++++ + + V L+E G++ Y + GG +
Sbjct: 70 LNDESTVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRERGVQLLYDEPKLGTGGNRINF 129
Query: 120 LFFHDPDGFMIEIC 133
+ G +IE+
Sbjct: 130 MHPKSGKGVLIELT 143
>pdb|3KOL|A Chain A, Crystal Structure Of A GlyoxalaseDIOXYGENASE FROM NOSTOC
Punctiforme
Length = 156
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 39/152 (25%)
Query: 8 PLHLKSVNHVSLVCRNISESIDFYQNVLGFVPIRR---PGSF----------NF---DGA 51
P +L+ V+H++L ++ S FY +LG + P + NF DG
Sbjct: 14 PGNLRKVHHIALNVQDXQASRYFYGTILGLHELTDDEVPATLTELVASGKVANFITPDGT 73
Query: 52 WL--FGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCESVGNVEKFLKEMGIKYV--- 106
L FG + PD P+K+ + HL+F +++ L + + +
Sbjct: 74 ILDLFGEP------ELSPPDPNPEKTFT--RAYHLAF------DIDPQLFDRAVTVIGEN 119
Query: 107 RALVEEGGILVEQ---LFFHDPDGFMIEI-CD 134
+ + G + ++F+DPDGF IEI CD
Sbjct: 120 KIAIAHGPVTRPTGRGVYFYDPDGFXIEIRCD 151
>pdb|3LUB|A Chain A, Crystal Structure Of Putative Creatinine Amidohydrolase
(Yp_211512.1) From Bacteroides Fragilis Nctc 9343 At
2.11 A Resolution
pdb|3LUB|B Chain B, Crystal Structure Of Putative Creatinine Amidohydrolase
(Yp_211512.1) From Bacteroides Fragilis Nctc 9343 At
2.11 A Resolution
pdb|3LUB|C Chain C, Crystal Structure Of Putative Creatinine Amidohydrolase
(Yp_211512.1) From Bacteroides Fragilis Nctc 9343 At
2.11 A Resolution
pdb|3LUB|D Chain D, Crystal Structure Of Putative Creatinine Amidohydrolase
(Yp_211512.1) From Bacteroides Fragilis Nctc 9343 At
2.11 A Resolution
pdb|3LUB|E Chain E, Crystal Structure Of Putative Creatinine Amidohydrolase
(Yp_211512.1) From Bacteroides Fragilis Nctc 9343 At
2.11 A Resolution
pdb|3LUB|F Chain F, Crystal Structure Of Putative Creatinine Amidohydrolase
(Yp_211512.1) From Bacteroides Fragilis Nctc 9343 At
2.11 A Resolution
pdb|3LUB|G Chain G, Crystal Structure Of Putative Creatinine Amidohydrolase
(Yp_211512.1) From Bacteroides Fragilis Nctc 9343 At
2.11 A Resolution
pdb|3LUB|H Chain H, Crystal Structure Of Putative Creatinine Amidohydrolase
(Yp_211512.1) From Bacteroides Fragilis Nctc 9343 At
2.11 A Resolution
pdb|3LUB|I Chain I, Crystal Structure Of Putative Creatinine Amidohydrolase
(Yp_211512.1) From Bacteroides Fragilis Nctc 9343 At
2.11 A Resolution
pdb|3LUB|J Chain J, Crystal Structure Of Putative Creatinine Amidohydrolase
(Yp_211512.1) From Bacteroides Fragilis Nctc 9343 At
2.11 A Resolution
pdb|3LUB|K Chain K, Crystal Structure Of Putative Creatinine Amidohydrolase
(Yp_211512.1) From Bacteroides Fragilis Nctc 9343 At
2.11 A Resolution
pdb|3LUB|L Chain L, Crystal Structure Of Putative Creatinine Amidohydrolase
(Yp_211512.1) From Bacteroides Fragilis Nctc 9343 At
2.11 A Resolution
Length = 254
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 70 SLPKKSVINPKDNHLSFQCESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHD 124
SL +K P+ + VGN +K E G +YV+ +VE+ L E+ HD
Sbjct: 197 SLNEKVAWVPRHWDKATVDSGVGNPKKATAEKGERYVKPIVEKLAGLFEEXAQHD 251
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 13/132 (9%)
Query: 11 LKSVNHVSLVCRNISESIDFYQNVLG-----FVPIRRPGSFNFDGAWLFGHGIGIHLLQS 65
L +NHV++ ++ ++ FY+N+LG VP+ G ++ + LL
Sbjct: 3 LGRLNHVAIAVPDLEKAAAFYKNILGAQVSEAVPLPEHG---VSVVFVNLGNTKMELLHP 59
Query: 66 ENPDSLPKKSVINPKDNHLSFQCESVGNVEKFLKEMGIKYVRALVEEGGILVEQ---LFF 122
DS + K + C V N+ + ++ K +R+L EE I +F
Sbjct: 60 LGLDSPIAGFLQKNKAGGMHHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFL 119
Query: 123 HDPD--GFMIEI 132
H D G ++E+
Sbjct: 120 HPKDCGGVLVEL 131
>pdb|3HPV|A Chain A, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPV|B Chain B, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPV|C Chain C, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPV|D Chain D, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPY|A Chain A, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HPY|B Chain B, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HPY|C Chain C, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HPY|D Chain D, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HQ0|A Chain A, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
pdb|3HQ0|B Chain B, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
pdb|3HQ0|C Chain C, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
pdb|3HQ0|D Chain D, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
Length = 309
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 16 HVSLVCRNISESIDFYQNVLGFVPIRR 42
H + N+ E I FY+NVLG V R
Sbjct: 11 HAQVRVLNLEEGIHFYRNVLGLVETGR 37
>pdb|2F3O|A Chain A, Crystal Structure Of A Glycyl Radical Enzyme From
Archaeoglobus Fulgidus
pdb|2F3O|B Chain B, Crystal Structure Of A Glycyl Radical Enzyme From
Archaeoglobus Fulgidus
Length = 776
Score = 27.3 bits (59), Expect = 4.6, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 1 MKESAGNPLHLKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGI 60
MK++ G P+ ++ + V NI I + ++G + P GA +F G+G+
Sbjct: 31 MKQTEGEPMIIRQAKALKHVLENIPIQILDSELIVGTMLPNPP------GAIIFPEGVGL 84
Query: 61 HLLQSENPDSLPKK 74
++ DSLP +
Sbjct: 85 RIINEL--DSLPNR 96
>pdb|3OAJ|A Chain A, Crystal Structure Of Putative Dioxygenase From Bacillus
Subtilis Subsp. Subtilis Str. 168
pdb|3OAJ|B Chain B, Crystal Structure Of Putative Dioxygenase From Bacillus
Subtilis Subsp. Subtilis Str. 168
Length = 335
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFD 49
++H++ + + E+ DFY VLG +++ + NFD
Sbjct: 8 GIHHITAIVGHPQENTDFYAGVLGLRLVKQ--TVNFD 42
>pdb|3RJ5|A Chain A, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ5|B Chain B, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ9|A Chain A, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ9|B Chain B, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ9|C Chain C, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ9|D Chain D, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ9|E Chain E, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ9|F Chain F, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
Length = 254
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 66 ENPDSLPKKSVINPKDN---HLSFQCESVGNVEKFLKEM--GIKYVRALVEEGGIL 116
ENP +L + INPK N H V +K LK++ +K V L+ GIL
Sbjct: 40 ENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGIL 95
>pdb|1A4U|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis
pdb|1A4U|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis
pdb|1B16|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
Complex With Nad-3-pentanone
pdb|1B16|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
Complex With Nad-3-pentanone
pdb|1B14|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis Binary
Complex With Nad+
pdb|1B14|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis Binary
Complex With Nad+
pdb|1B15|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
Complex With Nad-Acetone
pdb|1B15|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
Complex With Nad-Acetone
pdb|1B2L|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis:
Ternary Complex With Nad-Cyclohexanone
pdb|1SBY|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis
Complexed With Nad+ And 2,2,2-Trifluoroethanol At 1.1 A
Resolution
pdb|1SBY|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis
Complexed With Nad+ And 2,2,2-Trifluoroethanol At 1.1 A
Resolution
Length = 254
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 66 ENPDSLPKKSVINPKDN---HLSFQCESVGNVEKFLKEM--GIKYVRALVEEGGIL 116
ENP +L + INPK N H V +K LK++ +K V L+ GIL
Sbjct: 40 ENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGIL 95
>pdb|2VQX|A Chain A, Precursor Of Protealysin, Metalloproteinase From
Serratia Proteamaculans
Length = 341
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 14 VNHVSLVCRNIS-ESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLP 72
+ H SL R+ + +++ Q++LG P+R PG+ G + + +EN LP
Sbjct: 19 IEHGSLPQRDCALHTLNHVQSLLGNKPLRAPGAKTSTGGEVI-----RDIYDAENSTQLP 73
Query: 73 KKSVIN 78
K V N
Sbjct: 74 GKQVRN 79
>pdb|1F1R|A Chain A, Crystal Structure Of Homoprotocatechuate 2,3-Dioxygenase
From Arthrobacter Globiformis (Native, Non-Cryo)
pdb|1F1R|B Chain B, Crystal Structure Of Homoprotocatechuate 2,3-Dioxygenase
From Arthrobacter Globiformis (Native, Non-Cryo)
pdb|1F1U|A Chain A, Crystal Structure Of Homoprotocatechuate 2,3-dioxygenase
From Arthrobacter Globiformis (native, Low Temperature)
pdb|1F1U|B Chain B, Crystal Structure Of Homoprotocatechuate 2,3-dioxygenase
From Arthrobacter Globiformis (native, Low Temperature)
pdb|1F1V|A Chain A, Anaerobic Substrate Complex Of Homoprotocatechuate
2,3-Dioxygenase From Arthrobacter Globiformis. (Complex
With 3,4- Dihydroxyphenylacetate)
pdb|1F1V|B Chain B, Anaerobic Substrate Complex Of Homoprotocatechuate
2,3-Dioxygenase From Arthrobacter Globiformis. (Complex
With 3,4- Dihydroxyphenylacetate)
Length = 323
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 79 PKDNHLSFQCESVGNVEKFLKEMGIKYVRALVEEG----GIL-VEQLFFHDPDGFMIEIC 133
P+ +H++F N+ + +MG + +E G G+ L+ DPDG IEI
Sbjct: 210 PRMHHVAFATHEKHNIIQICDKMGALRISDRIERGPGRHGVSNAFYLYILDPDGHRIEIY 269
Query: 134 DCD 136
D
Sbjct: 270 TQD 272
>pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|E Chain E, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|F Chain F, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|G Chain G, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|H Chain H, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
Length = 344
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 43 PGSFNFDGAWLFGHGIGIHLLQSENPDSLP 72
PG + DG +L +G I +L + NP LP
Sbjct: 66 PGEVSVDGDYLVVNGDRIRVLANRNPAELP 95
>pdb|3CUE|B Chain B, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|H Chain H, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|N Chain N, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|T Chain T, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 283
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 54 FGHGIGIHLLQ------SENPDSLPKKSVI---NPKDNHLSFQCESVG 92
+GH IGI LL+ S +P SLP+ S N + LS S G
Sbjct: 90 YGHNIGIRLLELLNFRASVSPSSLPRASAFLSQNESSSKLSNASNSPG 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,236,994
Number of Sequences: 62578
Number of extensions: 217667
Number of successful extensions: 569
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 540
Number of HSP's gapped (non-prelim): 44
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)