Query 030972
Match_columns 168
No_of_seqs 125 out of 1620
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:19:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11478 putative lyase; Provi 99.9 1.6E-21 3.5E-26 130.7 15.7 125 8-134 1-128 (129)
2 cd08353 Glo_EDI_BRP_like_7 Thi 99.9 3.4E-21 7.5E-26 131.3 16.0 123 11-135 1-141 (142)
3 cd08342 HPPD_N_like N-terminal 99.9 2.9E-21 6.3E-26 131.0 14.7 129 14-144 1-131 (136)
4 PLN03042 Lactoylglutathione ly 99.9 2.1E-20 4.5E-25 132.5 15.7 125 12-138 26-177 (185)
5 cd07243 2_3_CTD_C C-terminal d 99.9 1.6E-20 3.5E-25 128.5 13.5 120 9-137 2-127 (143)
6 TIGR03645 glyox_marine lactoyl 99.9 3.6E-20 7.8E-25 129.3 15.1 126 12-137 3-153 (162)
7 PLN02367 lactoylglutathione ly 99.9 4.7E-20 1E-24 133.6 16.1 125 12-138 74-225 (233)
8 cd07253 Glo_EDI_BRP_like_2 Thi 99.9 6.1E-20 1.3E-24 121.8 14.7 122 11-135 1-125 (125)
9 cd08352 Glo_EDI_BRP_like_1 Thi 99.9 5.4E-20 1.2E-24 122.1 14.5 122 11-134 1-125 (125)
10 TIGR00068 glyox_I lactoylgluta 99.9 5.1E-20 1.1E-24 126.9 14.7 127 7-137 11-143 (150)
11 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 6.4E-20 1.4E-24 121.9 14.3 119 13-133 1-125 (125)
12 PRK04101 fosfomycin resistance 99.8 8E-20 1.7E-24 124.4 14.5 119 10-137 1-121 (139)
13 cd07245 Glo_EDI_BRP_like_9 Thi 99.8 7.4E-20 1.6E-24 119.1 12.8 113 14-132 1-114 (114)
14 cd08364 FosX FosX, a fosfomyci 99.8 1.6E-19 3.6E-24 121.7 14.4 117 11-136 2-123 (131)
15 cd07265 2_3_CTD_N N-terminal d 99.8 2.1E-19 4.6E-24 119.4 14.1 111 11-135 2-119 (122)
16 cd07233 Glyoxalase_I Glyoxalas 99.8 2.3E-19 5.1E-24 118.7 13.9 115 14-133 1-121 (121)
17 TIGR03081 metmalonyl_epim meth 99.8 7.8E-20 1.7E-24 122.1 11.3 121 13-134 1-128 (128)
18 cd08361 PpCmtC_N N-terminal do 99.8 2.7E-19 5.8E-24 119.5 13.7 115 8-136 1-120 (124)
19 cd07252 BphC1-RGP6_N_like N-te 99.8 3.3E-19 7.2E-24 118.3 13.5 113 12-136 1-118 (120)
20 cd07242 Glo_EDI_BRP_like_6 Thi 99.8 6.6E-19 1.4E-23 117.8 14.8 118 13-134 1-127 (128)
21 cd08363 FosB FosB, a fosfomyci 99.8 3.3E-19 7.2E-24 120.2 13.0 114 14-136 1-116 (131)
22 PRK10291 glyoxalase I; Provisi 99.8 3.7E-19 8E-24 119.5 12.9 116 18-137 1-122 (129)
23 cd09011 Glo_EDI_BRP_like_23 Th 99.8 6.4E-19 1.4E-23 116.8 13.6 116 13-134 2-118 (120)
24 PLN02300 lactoylglutathione ly 99.8 6.1E-19 1.3E-23 133.5 15.2 126 8-137 19-150 (286)
25 cd08360 MhqB_like_C C-terminal 99.8 8.4E-19 1.8E-23 118.6 14.2 113 12-136 2-121 (134)
26 cd08347 PcpA_C_like C-terminal 99.8 6.4E-19 1.4E-23 122.3 13.9 116 13-137 1-122 (157)
27 cd09014 BphC-JF8_C_like C-term 99.8 7.2E-19 1.6E-23 123.2 14.3 121 9-135 2-127 (166)
28 cd07247 SgaA_N_like N-terminal 99.8 1.7E-18 3.7E-23 113.5 15.0 113 14-134 1-114 (114)
29 cd07255 Glo_EDI_BRP_like_12 Th 99.8 2.3E-18 4.9E-23 114.7 15.8 115 12-136 1-120 (125)
30 cd09013 BphC-JF8_N_like N-term 99.8 8.8E-19 1.9E-23 116.3 13.7 110 9-135 2-118 (121)
31 cd08351 ChaP_like ChaP, an enz 99.8 1.3E-18 2.8E-23 115.9 14.5 110 12-135 3-121 (123)
32 cd07263 Glo_EDI_BRP_like_16 Th 99.8 1.2E-18 2.7E-23 114.4 14.1 115 16-134 1-119 (119)
33 cd07239 BphC5-RK37_C_like C-te 99.8 6.3E-19 1.4E-23 120.7 13.1 112 12-137 3-119 (144)
34 PF00903 Glyoxalase: Glyoxalas 99.8 1.2E-19 2.6E-24 120.7 8.2 120 13-132 1-128 (128)
35 cd07267 THT_Oxygenase_N N-term 99.8 2.6E-18 5.6E-23 112.8 14.5 110 11-135 1-110 (113)
36 cd07257 THT_oxygenase_C The C- 99.8 3.1E-19 6.8E-24 123.4 10.3 121 13-137 1-127 (153)
37 cd07237 BphC1-RGP6_C_like C-te 99.8 1.2E-18 2.6E-23 120.6 13.3 117 11-137 7-133 (154)
38 cd08362 BphC5-RrK37_N_like N-t 99.8 1.9E-18 4.1E-23 114.3 13.3 113 11-135 1-117 (120)
39 cd07240 ED_TypeI_classII_N N-t 99.8 2.1E-18 4.6E-23 113.4 13.5 110 12-135 1-114 (117)
40 cd07256 HPCD_C_class_II C-term 99.8 1.7E-18 3.8E-23 120.7 13.7 122 12-144 2-132 (161)
41 cd07266 HPCD_N_class_II N-term 99.8 1.9E-18 4.2E-23 114.5 12.8 112 11-135 2-118 (121)
42 cd07249 MMCE Methylmalonyl-CoA 99.8 1.8E-18 3.8E-23 115.4 12.2 121 14-134 1-128 (128)
43 cd07244 FosA FosA, a Fosfomyci 99.8 2E-18 4.3E-23 114.7 12.3 109 13-136 1-111 (121)
44 PRK06724 hypothetical protein; 99.8 3.1E-18 6.7E-23 115.0 13.2 112 11-136 5-124 (128)
45 cd08359 Glo_EDI_BRP_like_22 Th 99.8 7.7E-18 1.7E-22 111.2 14.4 113 16-134 4-119 (119)
46 cd07264 Glo_EDI_BRP_like_15 Th 99.8 1E-17 2.2E-22 111.5 14.5 118 14-134 1-124 (125)
47 cd08346 PcpA_N_like N-terminal 99.8 5.4E-18 1.2E-22 112.6 13.2 116 13-133 1-126 (126)
48 cd08348 BphC2-C3-RGP6_C_like T 99.8 1.5E-17 3.3E-22 112.1 15.1 116 13-137 1-122 (134)
49 cd08345 Fosfomycin_RP Fosfomyc 99.8 5E-18 1.1E-22 111.1 12.0 109 16-135 1-111 (113)
50 cd08355 Glo_EDI_BRP_like_14 Th 99.8 2.1E-17 4.6E-22 109.7 15.1 118 17-135 3-122 (122)
51 cd07258 PpCmtC_C C-terminal do 99.8 5.3E-18 1.2E-22 115.7 12.1 112 15-137 1-116 (141)
52 cd08357 Glo_EDI_BRP_like_18 Th 99.8 1.2E-17 2.5E-22 111.1 13.3 116 16-135 2-125 (125)
53 cd08343 ED_TypeI_classII_C C-t 99.8 3.6E-17 7.7E-22 110.1 13.8 113 15-137 1-119 (131)
54 cd07262 Glo_EDI_BRP_like_19 Th 99.8 3.2E-17 7E-22 108.9 13.2 113 14-134 1-123 (123)
55 cd08349 BLMA_like Bleomycin bi 99.8 4.6E-17 9.9E-22 106.1 13.6 109 18-134 3-112 (112)
56 cd07261 Glo_EDI_BRP_like_11 Th 99.8 6.4E-17 1.4E-21 106.1 14.2 109 17-134 2-114 (114)
57 cd09012 Glo_EDI_BRP_like_24 Th 99.8 3.1E-17 6.8E-22 109.3 12.8 115 15-134 2-123 (124)
58 cd07238 Glo_EDI_BRP_like_5 Thi 99.8 6.1E-17 1.3E-21 105.9 13.9 106 16-135 3-111 (112)
59 cd07254 Glo_EDI_BRP_like_20 Th 99.8 6.8E-17 1.5E-21 106.9 14.3 111 15-135 3-117 (120)
60 cd07235 MRD Mitomycin C resist 99.8 3.5E-17 7.6E-22 108.6 12.9 117 14-134 1-122 (122)
61 cd07246 Glo_EDI_BRP_like_8 Thi 99.8 8.1E-17 1.8E-21 106.5 14.5 116 16-134 4-121 (122)
62 cd08350 BLMT_like BLMT, a bleo 99.8 5.6E-17 1.2E-21 107.5 13.6 108 16-135 5-119 (120)
63 PF12681 Glyoxalase_2: Glyoxal 99.8 2.4E-17 5.1E-22 106.9 11.5 104 19-133 1-108 (108)
64 cd08354 Glo_EDI_BRP_like_13 Th 99.7 1.1E-16 2.5E-21 105.8 14.2 116 14-134 1-121 (122)
65 TIGR03211 catechol_2_3 catecho 99.7 4.3E-17 9.3E-22 124.3 13.6 120 8-135 140-265 (303)
66 cd08344 MhqB_like_N N-terminal 99.7 6.9E-17 1.5E-21 105.8 12.8 103 13-135 2-109 (112)
67 cd06587 Glo_EDI_BRP_like This 99.7 6.8E-17 1.5E-21 104.1 12.3 112 16-132 1-112 (112)
68 cd08356 Glo_EDI_BRP_like_17 Th 99.7 1E-16 2.2E-21 105.4 12.4 104 17-134 5-113 (113)
69 cd08358 Glo_EDI_BRP_like_21 Th 99.7 2.8E-16 6.1E-21 104.9 14.0 108 13-134 2-126 (127)
70 TIGR02295 HpaD 3,4-dihydroxyph 99.7 2E-16 4.4E-21 120.1 13.5 118 9-137 132-258 (294)
71 TIGR03213 23dbph12diox 2,3-dih 99.7 2.4E-16 5.2E-21 119.3 13.7 114 11-136 1-119 (286)
72 TIGR03211 catechol_2_3 catecho 99.7 2E-16 4.4E-21 120.6 12.6 111 11-137 2-120 (303)
73 cd07251 Glo_EDI_BRP_like_10 Th 99.7 5.6E-16 1.2E-20 102.3 13.1 114 17-134 2-120 (121)
74 TIGR03213 23dbph12diox 2,3-dih 99.7 3.9E-16 8.4E-21 118.2 13.8 117 11-136 140-264 (286)
75 TIGR02295 HpaD 3,4-dihydroxyph 99.7 9.1E-16 2E-20 116.5 14.2 108 11-136 2-116 (294)
76 PLN02300 lactoylglutathione ly 99.6 5.3E-15 1.2E-19 112.0 14.0 123 11-137 152-280 (286)
77 PF13669 Glyoxalase_4: Glyoxal 99.6 2.3E-15 4.9E-20 98.3 8.1 96 15-112 1-100 (109)
78 COG3324 Predicted enzyme relat 99.6 9.6E-14 2.1E-18 91.7 14.4 118 11-136 7-126 (127)
79 KOG2944 Glyoxalase [Carbohydra 99.6 9.1E-14 2E-18 93.5 12.2 123 11-135 20-168 (170)
80 COG3565 Predicted dioxygenase 99.5 3.4E-13 7.4E-18 86.0 11.9 120 13-138 4-132 (138)
81 COG3607 Predicted lactoylgluta 99.5 2.4E-13 5.2E-18 87.9 10.4 120 13-136 3-128 (133)
82 COG2514 Predicted ring-cleavag 99.5 8.8E-13 1.9E-17 96.3 13.2 115 12-136 9-127 (265)
83 cd07250 HPPD_C_like C-terminal 99.4 1.4E-12 3.1E-17 93.3 8.8 99 11-109 1-112 (191)
84 COG0346 GloA Lactoylglutathion 99.3 2.1E-11 4.6E-16 80.6 8.0 119 13-134 2-138 (138)
85 TIGR01263 4HPPD 4-hydroxypheny 99.3 1.7E-10 3.7E-15 90.0 13.6 124 13-136 2-128 (353)
86 cd06588 PhnB_like Escherichia 99.3 2.5E-10 5.3E-15 76.5 12.4 110 17-133 3-128 (128)
87 TIGR01263 4HPPD 4-hydroxypheny 99.3 6.5E-11 1.4E-15 92.3 10.5 103 7-109 152-267 (353)
88 KOG2943 Predicted glyoxalase [ 99.2 1.6E-10 3.5E-15 83.0 9.4 115 12-135 16-143 (299)
89 PRK01037 trmD tRNA (guanine-N( 99.2 2.3E-10 5E-15 87.1 10.2 105 13-135 247-354 (357)
90 KOG2943 Predicted glyoxalase [ 99.1 9.1E-10 2E-14 79.1 9.3 117 13-137 149-272 (299)
91 PLN02875 4-hydroxyphenylpyruva 99.0 1E-09 2.2E-14 86.0 8.1 100 10-109 177-295 (398)
92 COG2764 PhnB Uncharacterized p 99.0 5.3E-08 1.1E-12 65.5 13.0 117 17-137 4-133 (136)
93 KOG0638 4-hydroxyphenylpyruvat 98.9 1.1E-08 2.4E-13 76.4 8.7 131 4-134 8-147 (381)
94 COG2514 Predicted ring-cleavag 98.8 7.2E-08 1.6E-12 70.9 9.7 98 11-133 166-264 (265)
95 PF14506 CppA_N: CppA N-termin 98.7 1.4E-06 3E-11 56.5 12.9 113 15-137 2-116 (125)
96 PF13468 Glyoxalase_3: Glyoxal 98.7 5.3E-07 1.1E-11 63.6 10.7 124 14-137 1-139 (175)
97 PF14696 Glyoxalase_5: Hydroxy 98.6 4.4E-07 9.4E-12 61.3 8.2 123 7-136 3-127 (139)
98 PLN02875 4-hydroxyphenylpyruva 98.6 2.1E-06 4.5E-11 67.6 12.4 123 14-136 1-152 (398)
99 PRK10148 hypothetical protein; 98.5 1.3E-05 2.8E-10 55.0 14.3 113 17-137 5-143 (147)
100 COG3185 4-hydroxyphenylpyruvat 98.4 3.5E-07 7.5E-12 69.6 4.4 103 8-110 162-275 (363)
101 COG3185 4-hydroxyphenylpyruvat 97.6 0.0017 3.6E-08 50.0 11.1 116 6-126 15-141 (363)
102 KOG0638 4-hydroxyphenylpyruvat 97.5 0.00022 4.7E-09 53.9 4.7 132 9-140 174-342 (381)
103 PF06983 3-dmu-9_3-mt: 3-demet 97.3 0.0079 1.7E-07 39.5 10.3 99 16-133 6-116 (116)
104 PF15067 FAM124: FAM124 family 97.1 0.014 3.1E-07 42.5 10.4 103 13-131 128-234 (236)
105 PF13669 Glyoxalase_4: Glyoxal 96.7 0.011 2.3E-07 38.1 6.8 55 82-137 1-57 (109)
106 PF14507 CppA_C: CppA C-termin 96.1 0.022 4.8E-07 36.2 5.3 91 13-130 5-98 (101)
107 PF13468 Glyoxalase_3: Glyoxal 95.3 0.035 7.5E-07 39.0 4.5 53 81-136 1-55 (175)
108 KOG2944 Glyoxalase [Carbohydra 95.3 0.12 2.5E-06 35.6 6.6 52 12-64 114-167 (170)
109 cd08353 Glo_EDI_BRP_like_7 Thi 94.5 0.42 9.1E-06 31.8 7.9 58 80-137 3-71 (142)
110 cd08346 PcpA_N_like N-terminal 94.4 0.45 9.8E-06 30.6 7.7 58 80-137 1-62 (126)
111 cd08352 Glo_EDI_BRP_like_1 Thi 93.9 1 2.2E-05 28.8 8.6 57 80-137 3-60 (125)
112 PLN02367 lactoylglutathione ly 93.6 0.44 9.6E-06 35.2 6.9 56 12-68 168-225 (233)
113 PF13670 PepSY_2: Peptidase pr 92.8 0.72 1.6E-05 28.1 6.1 45 90-136 30-74 (83)
114 TIGR03645 glyox_marine lactoyl 92.5 1.5 3.2E-05 30.3 8.2 58 80-137 4-79 (162)
115 cd07249 MMCE Methylmalonyl-CoA 91.9 0.97 2.1E-05 29.1 6.4 31 12-43 71-101 (128)
116 PLN03042 Lactoylglutathione ly 91.8 1.2 2.6E-05 31.8 7.1 56 12-68 120-177 (185)
117 PF00903 Glyoxalase: Glyoxalas 91.7 2.3 4.9E-05 27.1 8.7 57 80-137 1-59 (128)
118 PRK10291 glyoxalase I; Provisi 91.2 1.7 3.7E-05 28.4 7.1 55 12-67 64-122 (129)
119 cd08360 MhqB_like_C C-terminal 90.4 1.5 3.3E-05 28.9 6.3 53 12-64 61-119 (134)
120 cd07242 Glo_EDI_BRP_like_6 Thi 89.5 2.9 6.3E-05 27.0 7.0 52 80-137 1-56 (128)
121 PRK11478 putative lyase; Provi 88.8 3.1 6.7E-05 26.9 6.8 29 12-41 74-102 (129)
122 TIGR03081 metmalonyl_epim meth 88.4 2.3 4.9E-05 27.4 5.9 30 12-42 71-100 (128)
123 COG3865 Uncharacterized protei 88.0 6.5 0.00014 26.8 11.7 98 21-134 13-123 (151)
124 cd08342 HPPD_N_like N-terminal 87.8 4.4 9.5E-05 26.8 7.1 56 12-68 68-126 (136)
125 cd07241 Glo_EDI_BRP_like_3 Thi 86.6 6.2 0.00013 25.0 7.9 54 81-136 2-57 (125)
126 cd07233 Glyoxalase_I Glyoxalas 86.6 6.2 0.00013 25.0 7.3 55 81-136 1-59 (121)
127 cd07263 Glo_EDI_BRP_like_16 Th 86.2 6.1 0.00013 24.7 6.9 52 83-136 1-55 (119)
128 cd07245 Glo_EDI_BRP_like_9 Thi 86.1 3.3 7.2E-05 25.6 5.6 53 81-137 1-54 (114)
129 cd06587 Glo_EDI_BRP_like This 85.9 5.8 0.00013 24.0 6.6 51 83-137 1-52 (112)
130 PRK11700 hypothetical protein; 85.8 11 0.00023 27.0 9.1 75 12-89 38-119 (187)
131 PF06185 YecM: YecM protein; 85.7 7.4 0.00016 27.7 7.3 75 12-89 33-114 (185)
132 cd08347 PcpA_C_like C-terminal 85.4 5.4 0.00012 27.3 6.7 54 12-66 64-121 (157)
133 cd07257 THT_oxygenase_C The C- 85.0 4.9 0.00011 27.3 6.2 54 12-65 66-125 (153)
134 TIGR00068 glyox_I lactoylgluta 84.8 5.6 0.00012 26.8 6.5 54 12-66 85-142 (150)
135 cd07268 Glo_EDI_BRP_like_4 Thi 81.6 14 0.00031 25.3 10.4 73 14-89 2-81 (149)
136 cd04895 ACT_ACR_1 ACT domain-c 81.0 8.6 0.00019 22.9 5.4 40 91-130 15-55 (72)
137 cd07243 2_3_CTD_C C-terminal d 80.9 9.2 0.0002 25.6 6.3 53 12-64 66-124 (143)
138 cd07250 HPPD_C_like C-terminal 80.8 11 0.00024 26.8 6.9 57 80-136 3-64 (191)
139 cd07247 SgaA_N_like N-terminal 79.7 12 0.00027 23.3 6.4 30 13-43 61-90 (114)
140 cd08348 BphC2-C3-RGP6_C_like T 78.4 15 0.00032 23.8 6.6 57 12-68 64-123 (134)
141 cd07237 BphC1-RGP6_C_like C-te 78.3 18 0.0004 24.5 8.3 57 79-135 8-68 (154)
142 cd07258 PpCmtC_C C-terminal do 78.0 12 0.00027 25.0 6.2 31 11-41 54-86 (141)
143 PF12681 Glyoxalase_2: Glyoxal 77.7 10 0.00022 23.4 5.5 31 11-42 54-84 (108)
144 cd08359 Glo_EDI_BRP_like_22 Th 77.2 14 0.0003 23.3 6.1 26 16-42 69-94 (119)
145 cd04882 ACT_Bt0572_2 C-termina 76.8 6.3 0.00014 22.0 3.9 26 80-105 39-64 (65)
146 cd07235 MRD Mitomycin C resist 76.0 15 0.00033 23.3 6.0 49 81-134 1-49 (122)
147 cd07267 THT_Oxygenase_N N-term 75.9 17 0.00037 22.9 6.7 53 12-65 56-110 (113)
148 cd09014 BphC-JF8_C_like C-term 75.8 23 0.0005 24.4 7.5 30 79-108 5-35 (166)
149 cd07239 BphC5-RK37_C_like C-te 74.7 20 0.00042 24.1 6.5 55 12-66 58-118 (144)
150 cd08344 MhqB_like_N N-terminal 74.7 16 0.00034 23.0 5.8 28 80-107 2-29 (112)
151 PRK06724 hypothetical protein; 74.1 18 0.0004 23.8 6.1 53 12-65 62-123 (128)
152 cd08364 FosX FosX, a fosfomyci 73.8 18 0.00039 23.6 6.0 28 13-41 66-95 (131)
153 cd07253 Glo_EDI_BRP_like_2 Thi 72.8 21 0.00045 22.4 6.1 29 12-41 66-95 (125)
154 cd07255 Glo_EDI_BRP_like_12 Th 71.7 23 0.00049 22.5 6.9 50 80-136 2-53 (125)
155 cd07244 FosA FosA, a Fosfomyci 71.0 19 0.0004 23.0 5.5 29 12-41 56-86 (121)
156 cd07238 Glo_EDI_BRP_like_5 Thi 70.9 23 0.00049 22.1 6.9 28 14-42 58-85 (112)
157 PRK04101 fosfomycin resistance 70.1 26 0.00057 23.1 6.2 29 12-41 62-92 (139)
158 cd08345 Fosfomycin_RP Fosfomyc 69.4 18 0.00038 22.5 5.1 52 12-64 54-110 (113)
159 PF03975 CheD: CheD chemotacti 68.6 14 0.00031 23.9 4.5 41 89-131 64-104 (114)
160 cd07256 HPCD_C_class_II C-term 67.4 37 0.00079 23.2 7.4 28 80-107 3-31 (161)
161 cd07265 2_3_CTD_N N-terminal d 67.4 29 0.00063 22.0 6.1 28 13-41 61-91 (122)
162 cd07264 Glo_EDI_BRP_like_15 Th 66.2 31 0.00066 21.8 6.3 27 15-42 73-99 (125)
163 PF07063 DUF1338: Domain of un 65.1 7.8 0.00017 29.9 3.1 30 77-106 181-216 (302)
164 cd08358 Glo_EDI_BRP_like_21 Th 64.7 38 0.00083 22.4 7.8 29 80-108 2-31 (127)
165 cd08363 FosB FosB, a fosfomyci 61.8 35 0.00076 22.2 5.5 28 12-40 58-87 (131)
166 PF12687 DUF3801: Protein of u 61.4 25 0.00054 25.5 5.0 49 78-126 31-79 (204)
167 cd04883 ACT_AcuB C-terminal AC 61.2 24 0.00051 20.2 4.2 28 80-107 41-70 (72)
168 cd07254 Glo_EDI_BRP_like_20 Th 60.4 40 0.00087 21.2 6.9 31 12-42 57-89 (120)
169 PRK03467 hypothetical protein; 60.2 50 0.0011 22.6 6.0 50 89-138 5-54 (144)
170 cd08343 ED_TypeI_classII_C C-t 60.2 44 0.00095 21.6 7.0 52 82-135 1-54 (131)
171 cd04897 ACT_ACR_3 ACT domain-c 60.2 35 0.00076 20.4 5.4 40 91-130 15-55 (75)
172 cd07262 Glo_EDI_BRP_like_19 Th 58.4 44 0.00096 21.1 6.1 50 81-136 1-55 (123)
173 cd04906 ACT_ThrD-I_1 First of 57.7 26 0.00057 21.2 4.0 28 80-107 40-71 (85)
174 cd08351 ChaP_like ChaP, an enz 57.4 48 0.001 21.1 6.0 28 13-41 58-87 (123)
175 cd07252 BphC1-RGP6_N_like N-te 56.9 48 0.001 21.0 6.1 29 80-108 2-31 (120)
176 PRK13490 chemoreceptor glutami 56.7 25 0.00055 24.5 4.2 40 89-130 112-151 (162)
177 PRK13495 chemoreceptor glutami 56.1 26 0.00057 24.3 4.2 40 89-130 105-144 (159)
178 cd07246 Glo_EDI_BRP_like_8 Thi 55.7 48 0.001 20.7 6.3 29 13-42 68-96 (122)
179 PRK13498 chemoreceptor glutami 55.3 28 0.0006 24.4 4.2 41 88-130 114-154 (167)
180 cd08349 BLMA_like Bleomycin bi 55.0 47 0.001 20.3 6.2 25 13-38 58-82 (112)
181 cd09013 BphC-JF8_N_like N-term 54.8 52 0.0011 20.8 5.9 28 12-39 61-90 (121)
182 PF07494 Reg_prop: Two compone 54.2 17 0.00037 16.3 2.1 13 119-131 8-20 (24)
183 PRK13494 chemoreceptor glutami 53.3 32 0.00068 24.1 4.2 40 89-130 114-153 (163)
184 KOG4657 Uncharacterized conser 52.9 11 0.00023 27.7 1.9 22 22-43 145-166 (246)
185 COG4747 ACT domain-containing 52.0 17 0.00037 24.0 2.5 80 14-108 42-136 (142)
186 TIGR00318 cyaB adenylyl cyclas 52.0 25 0.00054 24.6 3.6 24 84-107 6-29 (174)
187 cd09011 Glo_EDI_BRP_like_23 Th 51.8 59 0.0013 20.5 6.1 28 13-41 64-92 (120)
188 PRK13497 chemoreceptor glutami 50.9 36 0.00078 24.3 4.3 41 89-131 112-152 (184)
189 PF02208 Sorb: Sorbin homologo 50.8 6.6 0.00014 21.0 0.4 28 9-36 7-34 (47)
190 cd09012 Glo_EDI_BRP_like_24 Th 50.8 62 0.0014 20.5 6.0 25 82-106 2-26 (124)
191 cd07240 ED_TypeI_classII_N N-t 50.5 59 0.0013 20.1 6.2 31 12-43 56-89 (117)
192 PRK13488 chemoreceptor glutami 49.8 39 0.00084 23.4 4.2 40 89-130 107-146 (157)
193 PRK13491 chemoreceptor glutami 49.4 38 0.00082 24.5 4.2 41 89-131 115-155 (199)
194 cd04908 ACT_Bt0572_1 N-termina 47.3 50 0.0011 18.6 3.9 25 82-106 41-65 (66)
195 cd04885 ACT_ThrD-I Tandem C-te 47.1 34 0.00073 19.6 3.2 27 80-106 38-67 (68)
196 PRK13493 chemoreceptor glutami 46.6 42 0.00091 24.6 4.2 41 89-131 139-179 (213)
197 PRK13487 chemoreceptor glutami 46.5 44 0.00096 24.2 4.2 41 88-130 126-166 (201)
198 PF08445 FR47: FR47-like prote 46.2 39 0.00085 20.5 3.5 23 18-41 59-81 (86)
199 PRK03094 hypothetical protein; 41.4 83 0.0018 19.2 6.1 49 87-135 5-54 (80)
200 PRK13489 chemoreceptor glutami 41.3 58 0.0013 24.2 4.2 40 89-130 125-164 (233)
201 PF00585 Thr_dehydrat_C: C-ter 40.5 38 0.00083 21.0 2.8 30 79-108 49-81 (91)
202 PF13176 TPR_7: Tetratricopept 39.4 26 0.00056 17.2 1.6 22 17-38 8-29 (36)
203 COG0456 RimI Acetyltransferase 37.3 47 0.001 22.5 3.2 28 15-43 127-155 (177)
204 COG3603 Uncharacterized conser 36.3 44 0.00096 22.1 2.6 25 82-106 103-127 (128)
205 PF03698 UPF0180: Uncharacteri 35.8 1E+02 0.0023 18.7 4.4 47 87-133 5-52 (80)
206 PF09066 B2-adapt-app_C: Beta2 35.0 1.2E+02 0.0026 19.3 6.0 46 89-134 36-83 (114)
207 PRK10140 putative acetyltransf 34.5 60 0.0013 21.5 3.3 30 13-43 112-142 (162)
208 PF00379 Chitin_bind_4: Insect 34.1 82 0.0018 17.0 3.4 20 117-136 28-47 (52)
209 PF06923 GutM: Glucitol operon 33.1 1.4E+02 0.003 19.3 5.1 48 89-136 24-71 (109)
210 PF12142 PPO1_DWL: Polyphenol 33.0 60 0.0013 18.2 2.5 19 119-137 11-29 (54)
211 PF06877 RraB: Regulator of ri 33.0 41 0.00088 21.1 2.1 27 82-108 28-55 (104)
212 COG1871 CheD Chemotaxis protei 32.9 1E+02 0.0022 21.6 4.0 40 89-130 114-153 (164)
213 PF00583 Acetyltransf_1: Acety 32.6 67 0.0015 18.4 3.0 25 13-38 58-83 (83)
214 COG3254 Uncharacterized conser 31.1 1.5E+02 0.0032 19.1 4.7 21 117-137 40-60 (105)
215 PF13508 Acetyltransf_7: Acety 31.0 59 0.0013 18.8 2.5 21 16-39 59-79 (79)
216 PF14133 DUF4300: Domain of un 30.7 1.6E+02 0.0034 22.2 5.1 35 91-130 150-184 (250)
217 COG1437 CyaB Adenylate cyclase 30.6 2E+02 0.0044 20.5 8.2 79 13-105 77-162 (178)
218 PF11823 DUF3343: Protein of u 30.5 1.1E+02 0.0024 17.8 3.6 26 82-107 41-68 (73)
219 CHL00193 ycf35 Ycf35; Provisio 30.3 1.7E+02 0.0037 19.5 6.9 54 83-136 6-63 (128)
220 COG3102 Uncharacterized protei 30.0 2E+02 0.0044 20.3 7.7 86 9-97 35-128 (185)
221 PF09142 TruB_C: tRNA Pseudour 29.3 1.1E+02 0.0024 17.0 3.4 41 90-136 5-45 (56)
222 PRK13835 conjugal transfer pro 29.0 1.6E+02 0.0035 20.2 4.5 55 79-133 56-116 (145)
223 PF13420 Acetyltransf_4: Acety 28.6 79 0.0017 20.8 3.1 30 13-43 110-140 (155)
224 PRK12332 tsf elongation factor 28.1 73 0.0016 23.0 2.9 44 90-133 32-75 (198)
225 PF07063 DUF1338: Domain of un 28.0 68 0.0015 24.8 2.9 29 12-41 183-217 (302)
226 PRK10234 DNA-binding transcrip 27.2 1.9E+02 0.0041 19.1 5.0 49 88-136 24-72 (118)
227 PRK10314 putative acyltransfer 27.1 79 0.0017 21.4 2.9 23 17-42 112-134 (153)
228 PF11633 SUD-M: Single-strande 26.6 1.6E+02 0.0035 19.9 4.1 40 82-124 36-75 (142)
229 cd04886 ACT_ThrD-II-like C-ter 26.0 1.2E+02 0.0027 16.6 4.1 25 82-106 45-72 (73)
230 cd04909 ACT_PDH-BS C-terminal 25.9 75 0.0016 17.9 2.3 17 89-105 53-69 (69)
231 PRK09437 bcp thioredoxin-depen 25.4 2.1E+02 0.0046 19.0 5.6 56 79-134 63-137 (154)
232 PHA02754 hypothetical protein; 25.3 1.4E+02 0.0031 16.9 5.2 42 92-136 21-63 (67)
233 KOG3139 N-acetyltransferase [G 24.8 1.3E+02 0.0029 21.0 3.6 34 9-43 113-147 (165)
234 PRK09491 rimI ribosomal-protei 24.1 1.2E+02 0.0026 19.9 3.3 29 13-42 96-125 (146)
235 cd01942 ribokinase_group_A Rib 24.0 2.4E+02 0.0051 20.8 5.2 43 92-134 66-108 (279)
236 cd07582 nitrilase_4 Uncharacte 23.8 3.2E+02 0.007 20.6 6.6 47 90-136 78-128 (294)
237 COG0264 Tsf Translation elonga 23.4 96 0.0021 23.9 2.9 46 90-135 33-81 (296)
238 COG0253 DapF Diaminopimelate e 23.2 1.7E+02 0.0037 22.4 4.2 57 78-136 152-208 (272)
239 PRK11191 RNase E inhibitor pro 23.2 1.9E+02 0.0041 19.6 4.0 26 82-107 36-62 (138)
240 PRK15130 spermidine N1-acetylt 23.0 1.3E+02 0.0029 20.6 3.5 30 13-43 116-146 (186)
241 PRK14707 hypothetical protein; 23.0 1.7E+02 0.0037 29.4 4.8 45 90-134 2357-2405(2710)
242 PF11782 DUF3319: Protein of u 22.3 64 0.0014 20.0 1.5 14 22-36 35-48 (88)
243 KOG1249 Predicted GTPases [Gen 21.8 83 0.0018 26.5 2.4 26 15-40 434-459 (572)
244 cd01939 Ketohexokinase Ketohex 21.8 3.4E+02 0.0075 20.2 6.5 45 91-135 65-109 (290)
245 PLN02504 nitrilase 21.8 4E+02 0.0087 20.9 7.0 45 91-135 107-152 (346)
246 KOG2741 Dimeric dihydrodiol de 21.2 1.6E+02 0.0034 23.4 3.8 89 17-109 36-130 (351)
247 PF13756 Stimulus_sens_1: Stim 21.1 83 0.0018 20.3 1.9 12 120-131 21-32 (112)
248 smart00671 SEL1 Sel1-like repe 21.0 97 0.0021 14.5 1.8 14 21-34 18-31 (36)
249 TIGR03585 PseH pseudaminic aci 20.6 1.6E+02 0.0035 19.3 3.4 30 13-43 109-139 (156)
250 cd04896 ACT_ACR-like_3 ACT dom 20.4 2.1E+02 0.0045 17.1 5.2 38 91-129 14-54 (75)
251 cd04927 ACT_ACR-like_2 Second 20.2 2E+02 0.0043 16.8 6.0 38 91-128 14-53 (76)
252 PRK13577 diaminopimelate epime 20.1 2.2E+02 0.0048 21.5 4.4 56 78-137 155-210 (281)
No 1
>PRK11478 putative lyase; Provisional
Probab=99.89 E-value=1.6e-21 Score=130.67 Aligned_cols=125 Identities=23% Similarity=0.350 Sum_probs=88.3
Q ss_pred CCccceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCC---CcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEE
Q 030972 8 PLHLKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSF---NFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHL 84 (168)
Q Consensus 8 ~~~~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl 84 (168)
++.+.+++||+|.|+|++++++||+++|||++....... .+...+...++..++++....+...+. .....+..|+
T Consensus 1 ~~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~-~~~~~g~~hi 79 (129)
T PRK11478 1 MLGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPERPS-RPEACGLRHL 79 (129)
T ss_pred CCCcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEecCCCCCCC-CCCCCceeEE
Confidence 467889999999999999999999999999986432111 111122223445677776443322111 1223567899
Q ss_pred EEEeCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEe
Q 030972 85 SFQCESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 85 ~~~v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 134 (168)
+|.|+|+++++++|+++|+++...+... ..+.+.+||.|||||.|||++
T Consensus 80 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 80 AFSVDDIDAAVAHLESHNVKCEAIRVDP-YTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEEeCCHHHHHHHHHHcCCeeeccccCC-CCCCEEEEEECCCCCEEEEEe
Confidence 9999999999999999999986443222 123466999999999999986
No 2
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.88 E-value=3.4e-21 Score=131.31 Aligned_cols=123 Identities=18% Similarity=0.290 Sum_probs=90.2
Q ss_pred cceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCC-------------CcceeEEe--cCCcEEEEeecCCCCCCCCC-
Q 030972 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSF-------------NFDGAWLF--GHGIGIHLLQSENPDSLPKK- 74 (168)
Q Consensus 11 ~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~-------------~~~~~~~~--~~~~~~~l~~~~~~~~~~~~- 74 (168)
+++++||+|.|+|++++++||++ |||+...+.... ....+++. .++..++|+....+......
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~ 79 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHR 79 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCC
Confidence 46899999999999999999998 999876543210 01112332 23457888876554322111
Q ss_pred --CCCCCCceEEEEEeCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEee
Q 030972 75 --SVINPKDNHLSFQCESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 75 --~~~~~~~~hl~~~v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
.....+..|+||.|+|+++++++|+++|+++..++... +.+.+.+||+||||+.|||++.
T Consensus 80 ~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~-~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 80 PAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQY-ENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceec-CCCeEEEEEECCCCCEEEeeec
Confidence 12345788999999999999999999999998765433 2356779999999999999984
No 3
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.88 E-value=2.9e-21 Score=131.05 Aligned_cols=129 Identities=17% Similarity=0.140 Sum_probs=93.8
Q ss_pred eeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCC--CCCCCCceEEEEEeCCH
Q 030972 14 VNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKK--SVINPKDNHLSFQCESV 91 (168)
Q Consensus 14 l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~hl~~~v~dl 91 (168)
++|+.|.|.|++++++||+++|||+........+....++..++..+.+............ .....+..|++|.|+|+
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~V~Dv 80 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSEDKASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFRVDDA 80 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCceEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEEeCCH
Confidence 5899999999999999999999999877543221222334444455665543332111010 12345788999999999
Q ss_pred HHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCCCCCCCcc
Q 030972 92 GNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDNLPVVPLV 144 (168)
Q Consensus 92 ~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~~~~p~~ 144 (168)
++++++|+++|+++...|...+ .+.+.++++||||+.|||++... ..+|+.
T Consensus 81 da~~~~l~~~G~~v~~~p~~~~-~~~~~~~i~dp~G~~ie~~~~~~-~~~~~~ 131 (136)
T cd08342 81 AAAYERAVARGAKPVQEPVEEP-GELKIAAIKGYGDSLHTLVDRKG-YKGPFL 131 (136)
T ss_pred HHHHHHHHHcCCeEccCceecC-CeEEEEEEeccCCcEEEEEecCC-CCCccC
Confidence 9999999999999998776633 45678999999999999999665 555554
No 4
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.86 E-value=2.1e-20 Score=132.48 Aligned_cols=125 Identities=22% Similarity=0.373 Sum_probs=91.1
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccCC--CCCcceeEEe-------------------cCCcEEEEeecCCCCC
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRPG--SFNFDGAWLF-------------------GHGIGIHLLQSENPDS 70 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~ 70 (168)
-++.|++|.|.|++++++||+++|||+...+.. ...+..+++. ..+..++|+.......
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~ 105 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTES 105 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcc
Confidence 478999999999999999999999999876633 2223333332 1234788887554322
Q ss_pred CC----C--CCCCCCCceEEEEEeCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCCC
Q 030972 71 LP----K--KSVINPKDNHLSFQCESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDNL 138 (168)
Q Consensus 71 ~~----~--~~~~~~~~~hl~~~v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~ 138 (168)
.+ . ......|..|++|.|+|+++++++|+++|+++...+.... ..+.+||+|||||.|||++..+.
T Consensus 106 ~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~--~~~~~fi~DPdG~~IEl~e~~~~ 177 (185)
T PLN03042 106 DPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGK--MKGLAFIKDPDGYWIEIFDLKRI 177 (185)
T ss_pred cccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCC--ceeEEEEECCCCCEEEEEECCCc
Confidence 11 0 0111248899999999999999999999999986554322 23558889999999999998764
No 5
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.86 E-value=1.6e-20 Score=128.49 Aligned_cols=120 Identities=20% Similarity=0.213 Sum_probs=83.0
Q ss_pred CccceeeeEEEEeCCHHHHHHHHHHccCCeeeccCC--CCC-cceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEE
Q 030972 9 LHLKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPG--SFN-FDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLS 85 (168)
Q Consensus 9 ~~~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~--~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~ 85 (168)
+.+.+|+|++|.|+|++++.+||+++|||++..+.. ... ....|+..+.. .+.+..... ...+.+|+|
T Consensus 2 ~~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~-~h~~~~~~~--------~~~~~~Hia 72 (143)
T cd07243 2 IGAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK-PHDIAFVGG--------PDGKLHHFS 72 (143)
T ss_pred CCCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC-cceEEEecC--------CCCCceEEE
Confidence 346789999999999999999999999999755421 111 12445543322 222211110 124789999
Q ss_pred EEeCCHHH---HHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 86 FQCESVGN---VEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 86 ~~v~dl~~---~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
|.|+|+++ +.++|+++|+++...|........+++||.|||||.|||.+...
T Consensus 73 f~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~~~ 127 (143)
T cd07243 73 FFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAGGY 127 (143)
T ss_pred EEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecCce
Confidence 99998777 56899999999876554322123467999999999999987543
No 6
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.86 E-value=3.6e-20 Score=129.27 Aligned_cols=126 Identities=21% Similarity=0.307 Sum_probs=88.8
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccC----CC----------------CCcceeEEecC-CcEEEEeecCCCCC
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRP----GS----------------FNFDGAWLFGH-GIGIHLLQSENPDS 70 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~----~~----------------~~~~~~~~~~~-~~~~~l~~~~~~~~ 70 (168)
.+++||+|.|+|++++++||+++|||+...+. .. .....+++..+ +..+++++......
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~ 82 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQEN 82 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCC
Confidence 57999999999999999999999999875321 00 00122344323 45688888765432
Q ss_pred CCCC-CCCCCCceEEEEEeCCHHHHHHHHHHcCCeEEeee-ee-eCC-eeEEEEEEECCCCCEEEEEeeCC
Q 030972 71 LPKK-SVINPKDNHLSFQCESVGNVEKFLKEMGIKYVRAL-VE-EGG-ILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 71 ~~~~-~~~~~~~~hl~~~v~dl~~~~~~l~~~g~~~~~~~-~~-~~g-~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
.... .....|..|+||.|+|+++++++|+++|+++...+ .. ..+ ...+.+||+|||||.|||++...
T Consensus 83 ~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 83 PEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred CCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 2111 12246889999999999999999999998764332 11 111 13467999999999999999764
No 7
>PLN02367 lactoylglutathione lyase
Probab=99.86 E-value=4.7e-20 Score=133.57 Aligned_cols=125 Identities=23% Similarity=0.372 Sum_probs=92.0
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccCC--CCCcceeEEec-------------------CCcEEEEeecCCCCC
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRPG--SFNFDGAWLFG-------------------HGIGIHLLQSENPDS 70 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~~-------------------~~~~~~l~~~~~~~~ 70 (168)
-.+.|++|.|+|++++++||+++|||+...+.. ...+..+|+.. .+..++|........
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~ 153 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTES 153 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCc
Confidence 468999999999999999999999999877543 22334444421 134678876555432
Q ss_pred CC--CCC----CCCCCceEEEEEeCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCCC
Q 030972 71 LP--KKS----VINPKDNHLSFQCESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDNL 138 (168)
Q Consensus 71 ~~--~~~----~~~~~~~hl~~~v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~ 138 (168)
.+ ..+ ....|+.||||.|+|+++++++|+++|+++...|.. +...+.+||+|||||.|||++....
T Consensus 154 ~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~--g~~~riaFIkDPDGn~IEL~e~~~~ 225 (233)
T PLN02367 154 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPND--GKMKGIAFIKDPDGYWIEIFDLKTI 225 (233)
T ss_pred cccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCcc--CCceEEEEEECCCCCEEEEEecccc
Confidence 11 111 112589999999999999999999999999876543 2224568999999999999997653
No 8
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.85 E-value=6.1e-20 Score=121.81 Aligned_cols=122 Identities=25% Similarity=0.388 Sum_probs=89.6
Q ss_pred cceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeC-
Q 030972 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCE- 89 (168)
Q Consensus 11 ~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~- 89 (168)
+++++|+.|.|+|++++++||+++||++.....+.. ...++..++..+++....... .+.......+..|++|.++
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~hi~~~~~~ 77 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GRKALRFGSQKINLHPVGGEF-EPAAGSPGPGSDDLCLITEP 77 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC--CceEEEeCCEEEEEecCCCcc-CcCccCCCCCCceEEEEecc
Confidence 468999999999999999999999999987764321 233444455566666543321 1111123457799999997
Q ss_pred CHHHHHHHHHHcCCeEEeeeeeeCC--eeEEEEEEECCCCCEEEEEee
Q 030972 90 SVGNVEKFLKEMGIKYVRALVEEGG--ILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 90 dl~~~~~~l~~~g~~~~~~~~~~~g--~~~~~~~~~DPdG~~iel~~~ 135 (168)
++++++++|+++|+++...+....+ ...+.+||.|||||.||++++
T Consensus 78 ~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 78 PIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred cHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 4999999999999998876644322 234679999999999999874
No 9
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.85 E-value=5.4e-20 Score=122.05 Aligned_cols=122 Identities=29% Similarity=0.414 Sum_probs=87.0
Q ss_pred cceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCC--cceeEEe-cCCcEEEEeecCCCCCCCCCCCCCCCceEEEEE
Q 030972 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFN--FDGAWLF-GHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQ 87 (168)
Q Consensus 11 ~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~--~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~ 87 (168)
+++++||+|.|.|++++++||+++|||+........+ ...+.+. .++..++++........+. .....+..|++|.
T Consensus 1 ~~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~-~~~~~g~~h~~~~ 79 (125)
T cd08352 1 LFGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFPNPPERPS-YPEACGLRHLAFS 79 (125)
T ss_pred CCccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcCCCCCCCC-CCcCCCceEEEEE
Confidence 3579999999999999999999999999875432111 1112222 3455677766544322111 1234577899999
Q ss_pred eCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEe
Q 030972 88 CESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 88 v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 134 (168)
|+|+++++++|+++|+++...+.... .+.+.+|+.||+||.|||++
T Consensus 80 v~d~~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 80 VEDIEAAVKHLKAKGVEVEPIRVDEF-TGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred eCCHHHHHHHHHHcCCccccccccCC-CceEEEEEECCCCCEEEecC
Confidence 99999999999999999876543322 23466999999999999975
No 10
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.85 E-value=5.1e-20 Score=126.90 Aligned_cols=127 Identities=22% Similarity=0.261 Sum_probs=88.2
Q ss_pred CCCccceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCC--CcceeEEecCCc----EEEEeecCCCCCCCCCCCCCCC
Q 030972 7 NPLHLKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSF--NFDGAWLFGHGI----GIHLLQSENPDSLPKKSVINPK 80 (168)
Q Consensus 7 ~~~~~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~--~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~ 80 (168)
++...++++|+.|.|.|++++.+||+++|||+...+.... .....++..++. .+.+..... ..+ .....+
T Consensus 11 ~~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~--~~~~~g 86 (150)
T TIGR00068 11 PKTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWG--TEK--YDLGNG 86 (150)
T ss_pred cccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCC--CCc--ccCCCc
Confidence 4456789999999999999999999999999986543211 112233332221 222221111 111 122347
Q ss_pred ceEEEEEeCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 81 DNHLSFQCESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 81 ~~hl~~~v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
..|++|.|+|++++.++|.++|+++...+....+...+.+||+||+||.|||++...
T Consensus 87 ~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 143 (150)
T TIGR00068 87 FGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKS 143 (150)
T ss_pred eeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCc
Confidence 789999999999999999999999876654333333467899999999999998653
No 11
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.85 E-value=6.4e-20 Score=121.88 Aligned_cols=119 Identities=19% Similarity=0.268 Sum_probs=84.0
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeeccC--CCCCcceeEEec-CCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeC
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRRP--GSFNFDGAWLFG-HGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCE 89 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~--~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~ 89 (168)
+++||+|.|+|++++++||+++|||+..... ....+...|+.. ++..+++++........ ......+..|++|.|+
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~g~~hi~f~v~ 79 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAPSP-NEGERTGWAHLAFSVG 79 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCCCc-ccCCCCceEEEEEECC
Confidence 4789999999999999999999999975432 112233445544 34567777643321111 1123357899999996
Q ss_pred ---CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEE
Q 030972 90 ---SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEIC 133 (168)
Q Consensus 90 ---dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 133 (168)
++++++++|+++|+++...+... +.+.+.++|+|||||.|||.
T Consensus 80 ~~~~v~~~~~~l~~~g~~~~~~~~~~-~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 80 SKEAVDELTERLRADGYLIIGEPRTT-GDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCceec-CCCeEEEEEECCCCCEEEeC
Confidence 58999999999999998755432 23345578999999999984
No 12
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.85 E-value=8e-20 Score=124.40 Aligned_cols=119 Identities=25% Similarity=0.410 Sum_probs=89.4
Q ss_pred ccceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeC
Q 030972 10 HLKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCE 89 (168)
Q Consensus 10 ~~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~ 89 (168)
++.+++|+.|.|+|++++.+||+++|||++..+.. ..+++..++..+.+...... +.. ....+..|++|.++
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~~~~~~g~~l~l~~~~~~---~~~-~~~~~~~hiaf~v~ 72 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR----KTAYFDLNGLWIALNEEKDI---PRN-EIHQSYTHIAFSIE 72 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC----eeEEEecCCeEEEeeccCCC---CCc-cCCCCeeEEEEEec
Confidence 46789999999999999999999999999876533 34566666666655432211 111 12346789999998
Q ss_pred --CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 90 --SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 90 --dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
|+++++++|+++|+++...+.... .+.+.+||+|||||.|||.+...
T Consensus 73 ~~dv~~~~~~l~~~G~~i~~~~~~~~-~~~~~~~~~DPdGn~iEl~~~~~ 121 (139)
T PRK04101 73 EEDFDHWYQRLKENDVNILPGRERDE-RDKKSIYFTDPDGHKFEFHTGTL 121 (139)
T ss_pred HHHHHHHHHHHHHCCceEcCCccccC-CCceEEEEECCCCCEEEEEeCCH
Confidence 999999999999999876554332 24477999999999999998653
No 13
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.84 E-value=7.4e-20 Score=119.09 Aligned_cols=113 Identities=35% Similarity=0.635 Sum_probs=86.0
Q ss_pred eeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCc-EEEEeecCCCCCCCCCCCCCCCceEEEEEeCCHH
Q 030972 14 VNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGI-GIHLLQSENPDSLPKKSVINPKDNHLSFQCESVG 92 (168)
Q Consensus 14 l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~dl~ 92 (168)
|+|++|.|+|++++++||+++||++...+.... ....|+..++. .+++......... .....+..|++|.++|++
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~i~l~~~~~~~~~---~~~~~~~~~~~~~v~d~~ 76 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL-FPGAWLYAGDGPQLHLIEEDPPDAL---PEGPGRDDHIAFRVDDLD 76 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC-CCceEEEeCCCcEEEEEecCCCccc---cCCCcccceEEEEeCCHH
Confidence 589999999999999999999999987654321 23456665554 6777765544221 122356789999999999
Q ss_pred HHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEE
Q 030972 93 NVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEI 132 (168)
Q Consensus 93 ~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel 132 (168)
+++++++++|+++...+.. ..+.+.++|.||+||.|||
T Consensus 77 ~~~~~l~~~g~~~~~~~~~--~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 77 AFRARLKAAGVPYTESDVP--GDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHcCCCcccccCC--CCCccEEEEECCCCCEEeC
Confidence 9999999999998876543 2344679999999999996
No 14
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.84 E-value=1.6e-19 Score=121.68 Aligned_cols=117 Identities=17% Similarity=0.390 Sum_probs=84.7
Q ss_pred cceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCc---ceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEE
Q 030972 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNF---DGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQ 87 (168)
Q Consensus 11 ~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~ 87 (168)
+.+++|+.|.|+|++++++||+++||++...+.+...+ ...|+..++..+.+...... ...+..|++|.
T Consensus 2 i~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~--------~~~~~~Hiaf~ 73 (131)
T cd08364 2 IEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGGLWIAIMEGDSL--------QERTYNHIAFK 73 (131)
T ss_pred cccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCCeEEEEecCCCC--------CCCCceEEEEE
Confidence 67899999999999999999999999987655432111 12234444555666532211 12357899999
Q ss_pred eC--CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeC
Q 030972 88 CE--SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 88 v~--dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
|+ +++++.++|+++|+++........+ ..+.+||+|||||.|||....
T Consensus 74 v~~~~ld~~~~~l~~~gv~~~~~~~~~~~-~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 74 ISDSDVDEYTERIKALGVEMKPPRPRVQG-EGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred cCHHHHHHHHHHHHHCCCEEecCCccccC-CceEEEEECCCCCEEEEecCC
Confidence 98 7999999999999988644322222 346899999999999999753
No 15
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.84 E-value=2.1e-19 Score=119.41 Aligned_cols=111 Identities=22% Similarity=0.270 Sum_probs=80.6
Q ss_pred cceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecC--C--cEEEEeecCCCCCCCCCCCCCCCceEEEE
Q 030972 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGH--G--IGIHLLQSENPDSLPKKSVINPKDNHLSF 86 (168)
Q Consensus 11 ~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~--~--~~~~l~~~~~~~~~~~~~~~~~~~~hl~~ 86 (168)
+.+++|+.|.|+|++++++||+++|||+....... ..+|+... . ..+.+. .. ...+..|++|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~~---~~~~~~~~~~~~~~~~~l~--~~---------~~~~~~hiaf 67 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDDQ---GRVYLKAWDEFDHHSIVLR--EA---------DTAGLDFMGF 67 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecCC---ceEEEEccCCCcccEEEec--cC---------CCCCeeEEEE
Confidence 56899999999999999999999999998765421 23445432 1 122221 11 1236789999
Q ss_pred EeC---CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEee
Q 030972 87 QCE---SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 87 ~v~---dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
.++ +++++.++|+++|+++...+........+.+||+|||||.|||.+.
T Consensus 68 ~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 119 (122)
T cd07265 68 KVLDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYAD 119 (122)
T ss_pred EeCCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEe
Confidence 997 8889999999999998765432221123579999999999999875
No 16
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.83 E-value=2.3e-19 Score=118.65 Aligned_cols=115 Identities=26% Similarity=0.364 Sum_probs=84.1
Q ss_pred eeeEEEEeCCHHHHHHHHHHccCCeeeccCCC--CCcceeEEecCC----cEEEEeecCCCCCCCCCCCCCCCceEEEEE
Q 030972 14 VNHVSLVCRNISESIDFYQNVLGFVPIRRPGS--FNFDGAWLFGHG----IGIHLLQSENPDSLPKKSVINPKDNHLSFQ 87 (168)
Q Consensus 14 l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~--~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~ 87 (168)
+.|++|.|+|++++++||+++||++....... .+...+|+...+ ..+++........ ......+..|++|.
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~i~~~ 77 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEE---PYDNGNGFGHLAFA 77 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCC---CcCCCCCeEEEEEE
Confidence 57999999999999999999999998764321 123345555433 3555554332211 11223467899999
Q ss_pred eCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEE
Q 030972 88 CESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEIC 133 (168)
Q Consensus 88 v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 133 (168)
++|+++++++|+++|+.+...+.... ..+.+||+||+||+|||+
T Consensus 78 v~did~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 78 VDDVYAACERLEEMGVEVTKPPGDGG--MKGIAFIKDPDGYWIELI 121 (121)
T ss_pred eCCHHHHHHHHHHCCCEEeeCCccCC--CceEEEEECCCCCEEEeC
Confidence 99999999999999999987765442 346689999999999985
No 17
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.83 E-value=7.8e-20 Score=122.10 Aligned_cols=121 Identities=17% Similarity=0.248 Sum_probs=85.4
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeeccCC--CCCcceeEEecCCcEEEEeecCCCCCCCCC--CCCCCCceEEEEEe
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRRPG--SFNFDGAWLFGHGIGIHLLQSENPDSLPKK--SVINPKDNHLSFQC 88 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~hl~~~v 88 (168)
+++|++|.|+|++++++||+++|||+...... .......++..++..++|............ .....+..|++|.|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i~~~v 80 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHIAIEV 80 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEEEEEEc
Confidence 47899999999999999999999999875421 122334555556667787764332111110 01235678999999
Q ss_pred CCHHHHHHHHHHcCCeEEee-eeeeCCeeEEEEEE--ECCCCCEEEEEe
Q 030972 89 ESVGNVEKFLKEMGIKYVRA-LVEEGGILVEQLFF--HDPDGFMIEICD 134 (168)
Q Consensus 89 ~dl~~~~~~l~~~g~~~~~~-~~~~~g~~~~~~~~--~DPdG~~iel~~ 134 (168)
+|+++++++|+++|+++..+ +... ..+.+.+|+ +||||+.||+++
T Consensus 81 ~di~~~~~~l~~~G~~~~~~~~~~~-~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 81 DDIEAALETLKEKGVRLIDEEPRIG-AGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred CCHHHHHHHHHHCCCcccCCCCccC-CCCCEEEEecccccCcEEEEecC
Confidence 99999999999999998764 3322 123345666 799999999975
No 18
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.83 E-value=2.7e-19 Score=119.53 Aligned_cols=115 Identities=19% Similarity=0.301 Sum_probs=83.6
Q ss_pred CCccceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEE
Q 030972 8 PLHLKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQ 87 (168)
Q Consensus 8 ~~~~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~ 87 (168)
|.++.+|.|+.|.|+|++++.+||+++|||++..+.. ...|+..++....+... .. . .+..|++|.
T Consensus 1 ~~~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~----~~~~l~~~~~~~~i~l~-~~-~--------~~~~~iaf~ 66 (124)
T cd08361 1 MIELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA----KATYFRSDARDHTLVYI-EG-D--------PAEQASGFE 66 (124)
T ss_pred CceEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC----CeEEEEcCCccEEEEEE-eC-C--------CceEEEEEE
Confidence 4568899999999999999999999999999866533 35666654332222211 11 0 245899999
Q ss_pred eCC---HHHHHHHHHHcCCeEEeeeeeeC--CeeEEEEEEECCCCCEEEEEeeC
Q 030972 88 CES---VGNVEKFLKEMGIKYVRALVEEG--GILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 88 v~d---l~~~~~~l~~~g~~~~~~~~~~~--g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
|+| +++++++|+++|+++...+.... ....+.+||.|||||.|||.+..
T Consensus 67 v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 67 LRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred ECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 975 99999999999999876543211 11235589999999999998753
No 19
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.83 E-value=3.3e-19 Score=118.31 Aligned_cols=113 Identities=16% Similarity=0.144 Sum_probs=82.0
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeC--
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCE-- 89 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~-- 89 (168)
++|.||+|.|+|++++++||+++|||+...+.. ....|+..++....+.....+ ..+..|++|.++
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~f~v~~~ 68 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE---DGALYLRMDDRAWRIAVHPGE---------ADDLAYAGWEVADE 68 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC---CCeEEEEccCCceEEEEEeCC---------CCceeEEEEEECCH
Confidence 468999999999999999999999999866532 134566554433333322211 236789999997
Q ss_pred -CHHHHHHHHHHcCCeEEeeeeee--CCeeEEEEEEECCCCCEEEEEeeC
Q 030972 90 -SVGNVEKFLKEMGIKYVRALVEE--GGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 90 -dl~~~~~~l~~~g~~~~~~~~~~--~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
|+++++++|+++|+++...+... .....+.+||+|||||.|||++..
T Consensus 69 ~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 69 AALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred HHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 58889999999999997654211 111236799999999999999753
No 20
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.83 E-value=6.6e-19 Score=117.81 Aligned_cols=118 Identities=30% Similarity=0.488 Sum_probs=88.6
Q ss_pred eeeeEEEEeCCHHHHHHHHHHcc---CCeeeccCCCCCcceeEEec-CCcEEEEeecCCCCCCCCCCCCCCCceEEEEEe
Q 030972 13 SVNHVSLVCRNISESIDFYQNVL---GFVPIRRPGSFNFDGAWLFG-HGIGIHLLQSENPDSLPKKSVINPKDNHLSFQC 88 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~L---G~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v 88 (168)
+|+||+|.|+|++++.+||+++| ||+....... ...|... ++..+.++........ .......+..|++|.|
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~---~~~~~~~~~~~~i~l~~~~~~~~~-~~~~~~~g~~hia~~v 76 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED---GRSWRAGDGGTYLVLQQADGESAG-RHDRRNPGLHHLAFRA 76 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc---CceEEecCCceEEEEEecccCCCc-ccccCCcCeeEEEEEc
Confidence 47999999999999999999999 9998776421 2345543 5567777765543221 1112345678999999
Q ss_pred C---CHHHHHHHHHHcCCeEEeeeeee--CCeeEEEEEEECCCCCEEEEEe
Q 030972 89 E---SVGNVEKFLKEMGIKYVRALVEE--GGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 89 ~---dl~~~~~~l~~~g~~~~~~~~~~--~g~~~~~~~~~DPdG~~iel~~ 134 (168)
+ |+++++++|+++|+.+...+... ...+.+.+||+|||||.|||+.
T Consensus 77 ~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 77 PSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred CCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 7 58899999999999998866532 2234577999999999999986
No 21
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.82 E-value=3.3e-19 Score=120.19 Aligned_cols=114 Identities=23% Similarity=0.362 Sum_probs=85.1
Q ss_pred eeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeC--CH
Q 030972 14 VNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCE--SV 91 (168)
Q Consensus 14 l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~--dl 91 (168)
|+||.|.|+|++++++||+++|||++..... ...++..++..+.+...... +.. ....+..|++|.++ |+
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~----~~~~~~~~~~~l~l~~~~~~---~~~-~~~~~~~hiaf~v~~~dl 72 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE----KTAYFTIGGTWLALNEEPDI---PRN-EIRQSYTHIAFTIEDSEF 72 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC----ccceEeeCceEEEEEccCCC---CcC-CcCccceEEEEEecHHHH
Confidence 5899999999999999999999999876432 23455556666666543321 111 22356789999997 59
Q ss_pred HHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeC
Q 030972 92 GNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 92 ~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
++++++|+++|+++..++.... ...+.+||.|||||.|||.+..
T Consensus 73 d~~~~~l~~~G~~~~~~~~~~~-~~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 73 DAFYTRLKEAGVNILPGRKRDV-RDRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHcCCcccCCCcccc-CcceEEEEECCCCCEEEEecCc
Confidence 9999999999999875543322 2447799999999999999864
No 22
>PRK10291 glyoxalase I; Provisional
Probab=99.82 E-value=3.7e-19 Score=119.50 Aligned_cols=116 Identities=22% Similarity=0.333 Sum_probs=79.5
Q ss_pred EEEeCCHHHHHHHHHHccCCeeeccCCC--CCcceeEEecCC----cEEEEeecCCCCCCCCCCCCCCCceEEEEEeCCH
Q 030972 18 SLVCRNISESIDFYQNVLGFVPIRRPGS--FNFDGAWLFGHG----IGIHLLQSENPDSLPKKSVINPKDNHLSFQCESV 91 (168)
Q Consensus 18 ~l~v~D~~~a~~FY~~~LG~~~~~~~~~--~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~dl 91 (168)
+|.|.|++++++||+++|||+....... ..+..+|+..++ ..+++..... . .....+.+..|++|.|+|+
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~-~~~~~g~~~~hlaf~V~d~ 76 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWG---V-DKYELGTAYGHIALSVDNA 76 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCC---C-CCCcCCCCeeEEEEEeCCH
Confidence 4789999999999999999998764321 223344443332 1233322111 1 1112235788999999999
Q ss_pred HHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 92 GNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 92 ~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
++++++|+++|+++...+....+...+.+||+|||||.|||++...
T Consensus 77 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 77 AEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred HHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 9999999999999876543332223356889999999999999653
No 23
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.82 E-value=6.4e-19 Score=116.81 Aligned_cols=116 Identities=22% Similarity=0.275 Sum_probs=78.8
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeCCHH
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCESVG 92 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~dl~ 92 (168)
++.|+.|.|+|++++++||+++|||+.....+ ....+ .++..+.+.................+..|++|.|+|++
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~----~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v~dvd 76 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG----ENVTF-EGGFALQEGYSWLEGISKADIIEKSNNFELYFEEEDFD 76 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC----ceEEE-eccceeccchhhhccCCcccccccCCceEEEEEehhhH
Confidence 68899999999999999999999999865432 11122 22222222111000000011122345689999999999
Q ss_pred HHHHHHHHcCC-eEEeeeeeeCCeeEEEEEEECCCCCEEEEEe
Q 030972 93 NVEKFLKEMGI-KYVRALVEEGGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 93 ~~~~~l~~~g~-~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 134 (168)
+++++|+++|+ ++...+...+ ++.+.++|+|||||.|||.+
T Consensus 77 ~~~~~l~~~g~~~~~~~~~~~~-~g~r~~~~~DPdGn~iei~~ 118 (120)
T cd09011 77 AFLDKLKRYDNIEYVHPIKEHP-WGQRVVRFYDPDKHIIEVGE 118 (120)
T ss_pred HHHHHHHhcCCcEEecCcccCC-CccEEEEEECCCCCEEEEec
Confidence 99999999985 6766655433 44578999999999999987
No 24
>PLN02300 lactoylglutathione lyase
Probab=99.82 E-value=6.1e-19 Score=133.53 Aligned_cols=126 Identities=21% Similarity=0.261 Sum_probs=90.6
Q ss_pred CCccceeeeEEEEeCCHHHHHHHHHHccCCeeeccCC--CCCcceeEEecCC--c--EEEEeecCCCCCCCCCCCCCCCc
Q 030972 8 PLHLKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPG--SFNFDGAWLFGHG--I--GIHLLQSENPDSLPKKSVINPKD 81 (168)
Q Consensus 8 ~~~~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~~~~--~--~~~l~~~~~~~~~~~~~~~~~~~ 81 (168)
.|.+.+++|++|.|+|++++++||+++|||+...+.. ...+..+|+..++ . .+++...... .......+.
T Consensus 19 ~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~----~~~~~~~g~ 94 (286)
T PLN02300 19 KKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGV----DKYDIGTGF 94 (286)
T ss_pred ccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCC----CccccCCCc
Confidence 3678999999999999999999999999999876432 1222345554332 1 2333322111 111224578
Q ss_pred eEEEEEeCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 82 NHLSFQCESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 82 ~hl~~~v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
.|++|.|+|+++++++|+++|+++...+....+...+.+||+|||||.|||++...
T Consensus 95 ~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 150 (286)
T PLN02300 95 GHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGP 150 (286)
T ss_pred cEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCC
Confidence 89999999999999999999999887665443323456899999999999999753
No 25
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.82 E-value=8.4e-19 Score=118.61 Aligned_cols=113 Identities=20% Similarity=0.228 Sum_probs=82.5
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCC----cEEEEeecCCCCCCCCCCCCCCCceEEEEE
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHG----IGIHLLQSENPDSLPKKSVINPKDNHLSFQ 87 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~ 87 (168)
.+++|++|.|+|++++.+||+++||++...+.. ....|+..++ ..+.+..... ...+..|++|.
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~---~~~~~~~~~~~~~~~~i~l~~~~~---------~~~g~~hiaf~ 69 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK---GRGAFLRAAGGGDHHNLFLIKTPA---------PMAGFHHAAFE 69 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec---CcEEEEECCCCCCCcEEEEecCCC---------CCCcceEEEEE
Confidence 579999999999999999999999999876543 1345665432 2343432211 13578999999
Q ss_pred eCCHHHHH---HHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeC
Q 030972 88 CESVGNVE---KFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 88 v~dl~~~~---~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
|+|++++. ++|+++|+++...+........+.+||+||+||.|||....
T Consensus 70 v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~ 121 (134)
T cd08360 70 VGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADM 121 (134)
T ss_pred eCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccc
Confidence 99888776 59999999986544332222346699999999999999754
No 26
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.82 E-value=6.4e-19 Score=122.31 Aligned_cols=116 Identities=20% Similarity=0.372 Sum_probs=85.2
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecC---CcEEEEeecCCCCCCCCCCCCCCCceEEEEEeC
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGH---GIGIHLLQSENPDSLPKKSVINPKDNHLSFQCE 89 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~ 89 (168)
+++||+|.|+|++++.+||+++|||+...+... ...|+..+ +..+.+++..... .......+..|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~~---~~~~~~~~~~~~~~l~l~~~~~~~---~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEGD---RVRLEEGGGGPGAVVDVLEEPDQP---RGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeCC---EEEEEecCCCCCCEEEEEeCCCCC---CCcccCCceEEEEEECC
Confidence 479999999999999999999999998765431 23344333 4677777643211 11122356789999999
Q ss_pred C---HHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 90 S---VGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 90 d---l~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
| +++++++|+++|+.+.. +... + ..+++||+|||||.|||++...
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~~-~~~~-~-~~~s~yf~DPdG~~iEl~~~~~ 122 (157)
T cd08347 75 DDEELEAWKERLEALGLPVSG-IVDR-F-YFKSLYFREPGGILFEIATDGP 122 (157)
T ss_pred CHHHHHHHHHHHHHCCCCccc-cccc-c-cEEEEEEECCCCcEEEEEECCC
Confidence 7 89999999999998643 2222 2 3467999999999999999763
No 27
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.82 E-value=7.2e-19 Score=123.16 Aligned_cols=121 Identities=20% Similarity=0.284 Sum_probs=84.6
Q ss_pred CccceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCC--CCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEE
Q 030972 9 LHLKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGS--FNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSF 86 (168)
Q Consensus 9 ~~~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~ 86 (168)
|.+++|+|++|.|+|++++++||+++|||+....... ......|+...+....+....... ...++..|++|
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~------~~~~~~~hiaf 75 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAYTRDPA------GARGRLHHLAY 75 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCceeEEEecCCC------CCCCCceEEEE
Confidence 6789999999999999999999999999998654221 112345665443322222211110 11246799999
Q ss_pred EeCC---HHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEee
Q 030972 87 QCES---VGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 87 ~v~d---l~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
.|+| +++++++|+++|+++...+........+.+||.||+||.|||++.
T Consensus 76 ~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 76 ALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred ECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 9985 557889999999998655543321234569999999999999997
No 28
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.82 E-value=1.7e-18 Score=113.53 Aligned_cols=113 Identities=17% Similarity=0.141 Sum_probs=83.6
Q ss_pred eeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCC-cEEEEeecCCCCCCCCCCCCCCCceEEEEEeCCHH
Q 030972 14 VNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHG-IGIHLLQSENPDSLPKKSVINPKDNHLSFQCESVG 92 (168)
Q Consensus 14 l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~dl~ 92 (168)
+.|++|.|+|++++++||+++||++...... .....+++..++ ....++...... .......|++|.++|++
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~f~v~di~ 73 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDYAVFSTGGGAVGGLMKAPEPA------AGSPPGWLVYFAVDDVD 73 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCceEEEEeCCccEEEEecCCCCC------CCCCCeEEEEEEeCCHH
Confidence 4799999999999999999999999876543 111233444443 344454443321 12346689999999999
Q ss_pred HHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEe
Q 030972 93 NVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 93 ~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 134 (168)
+++++|+++|+++..++...+ ...+.++|.|||||.|+|++
T Consensus 74 ~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 74 AAAARVEAAGGKVLVPPTDIP-GVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHCCCEEEeCCcccC-CcEEEEEEECCCCCEEEeEC
Confidence 999999999999987765444 23478999999999999974
No 29
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.82 E-value=2.3e-18 Score=114.66 Aligned_cols=115 Identities=26% Similarity=0.342 Sum_probs=84.4
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCC--cEEEEeecCCCCCCCCCCCCCCCceEEEEEeC
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHG--IGIHLLQSENPDSLPKKSVINPKDNHLSFQCE 89 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~ 89 (168)
++|+||.|.|+|++++++||+++|||++....+ ..+++..++ ..+.+...... ........+..|++|.|+
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~~~l~~~~~~~~l~l~~~~~~---~~~~~~~~~~~hi~f~v~ 73 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD----STAVLGTGGKRPLLVLEEDPDA---PPAPPGATGLYHFAILLP 73 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC----CEEEEecCCCeEEEEEEeCCCC---CcccCCCCcEEEEEEECC
Confidence 479999999999999999999999999987643 345665554 34444443322 111123456789999997
Q ss_pred ---CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeC
Q 030972 90 ---SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 90 ---dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
++++++++|+++|+++.... .. + ..+.+||.|||||.|||.+..
T Consensus 74 ~~~~v~~~~~~l~~~g~~~~~~~-~~-~-~~~~~~~~DPdG~~iEi~~~~ 120 (125)
T cd07255 74 SRADLAAALRRLIELGIPLVGAS-DH-L-VSEALYLSDPEGNGIEIYADR 120 (125)
T ss_pred CHHHHHHHHHHHHHcCCceeccc-cc-c-ceeEEEEECCCCCEEEEEEec
Confidence 58899999999999875432 11 2 236799999999999999754
No 30
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.82 E-value=8.8e-19 Score=116.31 Aligned_cols=110 Identities=22% Similarity=0.338 Sum_probs=81.4
Q ss_pred CccceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCC----cEEEEeecCCCCCCCCCCCCCCCceEE
Q 030972 9 LHLKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHG----IGIHLLQSENPDSLPKKSVINPKDNHL 84 (168)
Q Consensus 9 ~~~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~hl 84 (168)
|.+++|+|+.|.|+|++++.+||+++|||++..+.+ ..+|+..++ ..+.+... ...+..|+
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~~~~l~~~~~~~~~~~~l~~~-----------~~~~~~h~ 66 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG----QSVYLRAWGDYEHHSLKLTES-----------PEAGLGHI 66 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----CeEEEEeccCCCccEEEEeeC-----------CCCceEEE
Confidence 567899999999999999999999999999877643 345554432 12222211 12478999
Q ss_pred EEEeC---CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEee
Q 030972 85 SFQCE---SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 85 ~~~v~---dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
+|.++ ++++++++++++|+++...+... + ....+||+|||||.|||...
T Consensus 67 af~v~~~~~v~~~~~~l~~~G~~~~~~~~~~-~-~~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 67 AWRASSPEALERRVAALEASGLGIGWIEGDP-G-HGKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCccccccCCC-C-CcceEEEECCCCCEEEEEEe
Confidence 99997 68889999999999874322211 2 23569999999999999974
No 31
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.82 E-value=1.3e-18 Score=115.90 Aligned_cols=110 Identities=23% Similarity=0.364 Sum_probs=81.5
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEe-cCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeC-
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLF-GHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCE- 89 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~- 89 (168)
.+++|+.|.|+|++++++||+++||++.....+ ...++. .++..+.+..... ..+..|++|.++
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~l~~~~~~~----------~~~~~h~a~~v~~ 68 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAKPFG----PFAVVKLDNGVSLDFAQPDG----------EIPPQHYAFLVSE 68 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC----CEEEEEcCCCcEEEEecCCC----------CCCcceEEEEeCH
Confidence 578999999999999999999999999876432 122232 2334455443211 124589999886
Q ss_pred -CHHHHHHHHHHcCCeEEeeeeee------CCeeEEEEEEECCCCCEEEEEee
Q 030972 90 -SVGNVEKFLKEMGIKYVRALVEE------GGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 90 -dl~~~~~~l~~~g~~~~~~~~~~------~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
|+++++++|+++|+++...+... ...+.+.+||.|||||.|||++.
T Consensus 69 ~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 69 EEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred HHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 69999999999999987655432 11345789999999999999986
No 32
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.82 E-value=1.2e-18 Score=114.40 Aligned_cols=115 Identities=19% Similarity=0.238 Sum_probs=81.3
Q ss_pred eEEEEeCCHHHHHHHHHHccCCeeeccCCC-CCcceeEEecC---CcEEEEeecCCCCCCCCCCCCCCCceEEEEEeCCH
Q 030972 16 HVSLVCRNISESIDFYQNVLGFVPIRRPGS-FNFDGAWLFGH---GIGIHLLQSENPDSLPKKSVINPKDNHLSFQCESV 91 (168)
Q Consensus 16 hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~-~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~dl 91 (168)
||.|.|.|++++++||+++|||++..+... .+...+.+... +..+++........ .......+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSPETSLVLAPPANPAA--MSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCCeeEEEEeCCCCccc--cccccCCCceEEEEEehHH
Confidence 899999999999999999999999876431 12222222222 22344443333211 1112345678999999999
Q ss_pred HHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEe
Q 030972 92 GNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 92 ~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 134 (168)
++++++|+++|+++...+.... ..+.++|+||+||.|||++
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~--~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMP--YGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCC--CceEEEEECCCCCEEEEeC
Confidence 9999999999999987763322 3477999999999999974
No 33
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.82 E-value=6.3e-19 Score=120.70 Aligned_cols=112 Identities=26% Similarity=0.389 Sum_probs=81.7
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCc--EEEEeecCCCCCCCCCCCCCCCceEEEEEeC
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGI--GIHLLQSENPDSLPKKSVINPKDNHLSFQCE 89 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~ 89 (168)
.+++|+.|.|+|++++++||+++|||+....... ...|+..+.. .+.+... ...+..|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~---~~~~l~~~~~~~~~~l~~~-----------~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLGD---QMAFLRCNSDHHSIAIARG-----------PHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeCC---eEEEEECCCCcceEEEccC-----------CCCceEEEEEECC
Confidence 4799999999999999999999999998654321 2456655432 3333221 1246789999999
Q ss_pred CHHHHH---HHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 90 SVGNVE---KFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 90 dl~~~~---~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
|++++. ++|+++|+++...+........+.+||.||+||.|||++...
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 877775 899999999876543322122345899999999999999764
No 34
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.81 E-value=1.2e-19 Score=120.66 Aligned_cols=120 Identities=23% Similarity=0.335 Sum_probs=86.2
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeeccCC----CCCcceeEEecCCcEEEEeecCCCCCCCCCC-CCCCCceEEEEE
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRRPG----SFNFDGAWLFGHGIGIHLLQSENPDSLPKKS-VINPKDNHLSFQ 87 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~hl~~~ 87 (168)
+|+||+|.|+|++++++||+++|||+...... .......++..+...+.+............. ....+..|+++.
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPRASGHSFPEHGGHHIAFL 80 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSSSEEEHHHSHTSEEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeeccccccccccccccccceeEEEE
Confidence 68999999999999999999999999987644 1122344555566666666655543222211 000145677777
Q ss_pred eC---CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEE
Q 030972 88 CE---SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEI 132 (168)
Q Consensus 88 v~---dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel 132 (168)
+. |+++++++|++.|+++...+..........+||+||+||.|||
T Consensus 81 ~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 81 AFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp ESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred eccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 75 7888999999999999988765544445557899999999997
No 35
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.81 E-value=2.6e-18 Score=112.85 Aligned_cols=110 Identities=19% Similarity=0.269 Sum_probs=81.4
Q ss_pred cceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeCC
Q 030972 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCES 90 (168)
Q Consensus 11 ~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d 90 (168)
+++++|+.|.|+|++++.+||++ |||+...+.. ...|+..++....++..... ...+..|++|.|+|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~----~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~af~v~~ 67 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD----DELYYRGYGTDPFVYVARKG--------EKARFVGAAFEAAS 67 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC----CeEEEecCCCccEEEEcccC--------CcCcccEEEEEECC
Confidence 46899999999999999999999 9999866543 34666554332223222111 12467899999999
Q ss_pred HHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEee
Q 030972 91 VGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 91 l~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
.+++.+.+++.|......+. .+ .+.+.+||.|||||.|||+..
T Consensus 68 ~~~~~~~~~~~g~~~~~~~~-~~-~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 68 RADLEKAAALPGASVIDDLE-AP-GGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred HHHHHHHHHcCCCeeecCCC-CC-CCceEEEEECCCCCEEEEEec
Confidence 99999999999998765432 12 233679999999999999875
No 36
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.81 E-value=3.1e-19 Score=123.42 Aligned_cols=121 Identities=19% Similarity=0.197 Sum_probs=80.7
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeeccCCC---CCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeC
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRRPGS---FNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCE 89 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~ 89 (168)
+|+||+|.|+|++++++||+++|||++..+... ......|+..++.. .+... ...........+..|+||.|+
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~---~~~~l~~~~~~g~~Hiaf~v~ 76 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGE-EYVDH---HTLALAQGPESGVHHAAFEVH 76 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCC-Ccccc---hHHHHhcCCCCceeEEEEEcC
Confidence 579999999999999999999999998654211 11234555443210 00000 000000011357899999999
Q ss_pred CHHHHH---HHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 90 SVGNVE---KFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 90 dl~~~~---~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
|++++. ++|+++|+++...+.........++||.||+||.|||.....
T Consensus 77 die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~ 127 (153)
T cd07257 77 DFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGD 127 (153)
T ss_pred CHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCce
Confidence 999986 999999999876543322112346899999999999997653
No 37
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.81 E-value=1.2e-18 Score=120.58 Aligned_cols=117 Identities=21% Similarity=0.255 Sum_probs=82.9
Q ss_pred cceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCC-----CCcceeEEecCCc--EEEEeecCCCCCCCCCCCCCCCceE
Q 030972 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGS-----FNFDGAWLFGHGI--GIHLLQSENPDSLPKKSVINPKDNH 83 (168)
Q Consensus 11 ~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~-----~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~h 83 (168)
.++|+||+|.|+|++++++||+++|||++...... .....+|+..++. .+.+.... ...+..|
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~----------~~~g~~H 76 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEGP----------GPKRIHH 76 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcCC----------CCceeEE
Confidence 35799999999999999999999999997653211 1123445544321 22322211 1247899
Q ss_pred EEEEeCCHH---HHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 84 LSFQCESVG---NVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 84 l~~~v~dl~---~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
++|.|+|++ ++.++|+++|+++...+...+....+++|++||+||.|||.+...
T Consensus 77 iaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 133 (154)
T cd07237 77 LMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGR 133 (154)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCce
Confidence 999998655 689999999999976654333234577999999999999987654
No 38
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.80 E-value=1.9e-18 Score=114.28 Aligned_cols=113 Identities=19% Similarity=0.244 Sum_probs=82.9
Q ss_pred cceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEe--
Q 030972 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQC-- 88 (168)
Q Consensus 11 ~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v-- 88 (168)
+.+|+|+.|.|+|++++++||+++|||+...... ...|+..++...+++..... ...+..|++|.+
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~v~~ 68 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GIVYLRATGSEHHILRLRRS--------DRNRLDVVSFSVAS 68 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CEEEEECCCCccEEEEeccC--------CCCCCceEEEEeCC
Confidence 4689999999999999999999999999876543 34566544433233322111 123568999999
Q ss_pred -CCHHHHHHHHHHcCCeEEeeeeee-CCeeEEEEEEECCCCCEEEEEee
Q 030972 89 -ESVGNVEKFLKEMGIKYVRALVEE-GGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 89 -~dl~~~~~~l~~~g~~~~~~~~~~-~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
+++++++++|+++|+++...+... .++..+.++|.||+||.|||+..
T Consensus 69 ~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 69 RADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred HHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEec
Confidence 478999999999999987665322 12234679999999999999975
No 39
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.80 E-value=2.1e-18 Score=113.37 Aligned_cols=110 Identities=23% Similarity=0.400 Sum_probs=84.0
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecC-CcEEEEeecCCCCCCCCCCCCCCCceEEEEEeC-
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGH-GIGIHLLQSENPDSLPKKSVINPKDNHLSFQCE- 89 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~- 89 (168)
++++|+.|.|+|++++++||+++||+++....+ ..+|+..+ +....+.....+ ..+..|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---------~~~~~h~~~~v~~ 67 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA----GSVYLRCSEDDHHSLVLTEGD---------EPGVDALGFEVAS 67 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC----CeEEEecCCCCcEEEEEEeCC---------CCCceeEEEEcCC
Confidence 378999999999999999999999999887653 35666655 333333322211 136789999997
Q ss_pred --CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEee
Q 030972 90 --SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 90 --dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
+++++.++|+++|+++...+....+ ..+.+||.||+||.||++..
T Consensus 68 ~~~v~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 68 EEDLEALAAHLEAAGVAPEEASDPEPG-VGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred HHHHHHHHHHHHHcCCceEEcCccCCC-CceEEEEECCCCCEEEEEEc
Confidence 6889999999999999876643332 34679999999999999974
No 40
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.80 E-value=1.7e-18 Score=120.66 Aligned_cols=122 Identities=23% Similarity=0.297 Sum_probs=80.4
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccCC--CCCcceeEEecCCc--EEEEeecCCCCCCCCCCCCCCCceEEEEE
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRPG--SFNFDGAWLFGHGI--GIHLLQSENPDSLPKKSVINPKDNHLSFQ 87 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~hl~~~ 87 (168)
++|+||+|.|+|++++++||+++|||+...... .......|+..++. .+.+.. ....+..|++|.
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~~~i~l~~-----------~~~~~~~Hiaf~ 70 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGVHDTALTG-----------GNGPRLHHVAFW 70 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCcceEEEec-----------CCCCceeEEEEE
Confidence 479999999999999999999999998764322 11112344433321 222211 112468899999
Q ss_pred eCC---HHHHHHHHHHcCCeE--EeeeeeeCCeeEEEEEEECCCCCEEEEEeeCCCCCCCcc
Q 030972 88 CES---VGNVEKFLKEMGIKY--VRALVEEGGILVEQLFFHDPDGFMIEICDCDNLPVVPLV 144 (168)
Q Consensus 88 v~d---l~~~~~~l~~~g~~~--~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~~~~p~~ 144 (168)
|+| +++++++|+++|+.. ...+........+.+||+|||||.|||++.......|..
T Consensus 71 v~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~~~~~~~~~ 132 (161)
T cd07256 71 VPEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGDYYTGDPDN 132 (161)
T ss_pred cCCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecCceeeCCCC
Confidence 985 777889999999863 222222221234679999999999999975543333433
No 41
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.80 E-value=1.9e-18 Score=114.50 Aligned_cols=112 Identities=27% Similarity=0.394 Sum_probs=80.5
Q ss_pred cceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecC--CcEEEEeecCCCCCCCCCCCCCCCceEEEEEe
Q 030972 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGH--GIGIHLLQSENPDSLPKKSVINPKDNHLSFQC 88 (168)
Q Consensus 11 ~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v 88 (168)
++++.|+.|.|+|++++++||+++||+++..... ...|+... .....+...... ..+..|++|.+
T Consensus 2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---------~~~~~hi~~~v 68 (121)
T cd07266 2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----DRIYLRGLEEFIHHSLVLTKAP---------VAGLGHIAFRV 68 (121)
T ss_pred cceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----CeEEEEecCCCceEEEEEeeCC---------CCceeEEEEEC
Confidence 5789999999999999999999999999876543 23455421 122222221111 24678999999
Q ss_pred C---CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEee
Q 030972 89 E---SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 89 ~---dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
. ++++++++|+++|+++...+........+.+|+.|||||.|||...
T Consensus 69 ~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 69 RSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred CCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 4 7889999999999998765332221123579999999999999863
No 42
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.80 E-value=1.8e-18 Score=115.36 Aligned_cols=121 Identities=21% Similarity=0.353 Sum_probs=87.6
Q ss_pred eeeEEEEeCCHHHHHHHHHHccCCeeeccCCC---CCcceeEEecCCcEEEEeecCCCCCCCC--CCCCCCCceEEEEEe
Q 030972 14 VNHVSLVCRNISESIDFYQNVLGFVPIRRPGS---FNFDGAWLFGHGIGIHLLQSENPDSLPK--KSVINPKDNHLSFQC 88 (168)
Q Consensus 14 l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~hl~~~v 88 (168)
++||.|.|+|++++.+||+++|||+....... .+...+++..++..+++++......... ......+..|++|.|
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~v 80 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFEV 80 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEEe
Confidence 57999999999999999999999999775442 1233566766777888887554322111 012356789999999
Q ss_pred CCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCC--CCEEEEEe
Q 030972 89 ESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPD--GFMIEICD 134 (168)
Q Consensus 89 ~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPd--G~~iel~~ 134 (168)
+|+++++++++++|+++...+......+...+++.||| |+.|||++
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 81 DDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred CCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 99999999999999999877653222233334444555 99999975
No 43
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.80 E-value=2e-18 Score=114.70 Aligned_cols=109 Identities=26% Similarity=0.456 Sum_probs=81.5
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEe--CC
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQC--ES 90 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v--~d 90 (168)
+|+|+.|.|+|++++.+||+++||++.....+ ...|+..++..+.+...... ....+..|++|.+ +|
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~----~~~~~~~~~~~~~l~~~~~~-------~~~~~~~hi~f~v~~~d 69 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD----KGAYLEAGDLWLCLSVDANV-------GPAKDYTHYAFSVSEED 69 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC----CceEEecCCEEEEEecCCCC-------CCCCCeeeEEEEeCHHH
Confidence 47899999999999999999999999876543 23555555554444322211 1134678999998 48
Q ss_pred HHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeC
Q 030972 91 VGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 91 l~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
+++++++|+++|+++...+.. .+ +.+||.|||||.|||....
T Consensus 70 l~~~~~~l~~~G~~~~~~~~~-~~---~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 70 FASLKEKLRQAGVKEWKENTS-EG---DSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHcCCcccCCCCC-Cc---cEEEEECCCCCEEEEEeCC
Confidence 999999999999998654322 22 5699999999999999753
No 44
>PRK06724 hypothetical protein; Provisional
Probab=99.80 E-value=3.1e-18 Score=115.01 Aligned_cols=112 Identities=25% Similarity=0.404 Sum_probs=78.5
Q ss_pred cceeeeEEEEeCCHHHHHHHHHHcc---CCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEE
Q 030972 11 LKSVNHVSLVCRNISESIDFYQNVL---GFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQ 87 (168)
Q Consensus 11 ~~~l~hv~l~v~D~~~a~~FY~~~L---G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~ 87 (168)
..+++||.|.|+|++++++||+++| |++.... .. +..+...+.+..... .. ....+..|+||.
T Consensus 5 ~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~-------~~-~~~g~~~l~l~~~~~--~~----~~~~g~~h~af~ 70 (128)
T PRK06724 5 RAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNE-------VA-YSTGESEIYFKEVDE--EI----VRTLGPRHICYQ 70 (128)
T ss_pred CcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeee-------Ee-eeCCCeeEEEecCCc--cc----cCCCCceeEEEe
Confidence 5679999999999999999999966 5554311 01 112222333332211 11 112467899999
Q ss_pred e---CCHHHHHHHHHHcCCeEEeeeeeeC--CeeEEEEEEECCCCCEEEEEeeC
Q 030972 88 C---ESVGNVEKFLKEMGIKYVRALVEEG--GILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 88 v---~dl~~~~~~l~~~g~~~~~~~~~~~--g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
| +++++++++|+++|+++...|.... +.+.+++||+|||||.|||+...
T Consensus 71 v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 71 AINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred cCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 8 5899999999999999976664422 34567899999999999998753
No 45
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.79 E-value=7.7e-18 Score=111.23 Aligned_cols=113 Identities=20% Similarity=0.325 Sum_probs=80.0
Q ss_pred eEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCC--cEEEEeecCCCCCCC-CCCCCCCCceEEEEEeCCHH
Q 030972 16 HVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHG--IGIHLLQSENPDSLP-KKSVINPKDNHLSFQCESVG 92 (168)
Q Consensus 16 hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~-~~~~~~~~~~hl~~~v~dl~ 92 (168)
+..|.|+|++++++||+++|||+...... ....+..++ ..+.+...... ..+ ......+...|++|.|+|++
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~~~~~~~~~~v~did 78 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD----WYVSLRSPDGGVELAFMLPGHE-TVPAAQYQFQGQGLILNFEVDDVD 78 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC----cEEEEecCCCceEEEEccCCCC-CCcchhcccCCceEEEEEEECCHH
Confidence 67899999999999999999999886532 223333333 23444433222 111 11122234469999999999
Q ss_pred HHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEe
Q 030972 93 NVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 93 ~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 134 (168)
+++++|+++|+++..++... +++.+.++|+||+||.|||++
T Consensus 79 ~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 79 AEYERLKAEGLPIVLPLRDE-PWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred HHHHHHHhcCCCeeeccccC-CCcceEEEEECCCCCEEEEEC
Confidence 99999999999987665543 234577999999999999985
No 46
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.79 E-value=1e-17 Score=111.47 Aligned_cols=118 Identities=16% Similarity=0.258 Sum_probs=80.5
Q ss_pred eeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCC-----CC-CCCCCCCCCceEEEEE
Q 030972 14 VNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPD-----SL-PKKSVINPKDNHLSFQ 87 (168)
Q Consensus 14 l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~-~~~~~~~~~~~hl~~~ 87 (168)
+.|+.|.|+|++++.+||+++|||+.........+ ..+..++..+.+....... .. +.......+..|++|.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHESGDY--GELETGETTLAFASHDLAESNLKGGFVKADPAQPPAGFEIAFV 78 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecCCCcE--EEecCCcEEEEEEcccccccccccCccCCccccCCCcEEEEEE
Confidence 46999999999999999999999998654321111 1122333344443322110 00 0111122345799999
Q ss_pred eCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEe
Q 030972 88 CESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 88 v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 134 (168)
|+|+++++++++++|+++..++...+ ++.+.++|.|||||.|||++
T Consensus 79 v~di~~~~~~l~~~G~~~~~~~~~~~-~g~~~~~~~DPdG~~~~~~~ 124 (125)
T cd07264 79 TDDVAAAFARAVEAGAVLVSEPKEKP-WGQTVAYVRDINGFLIELCS 124 (125)
T ss_pred cCCHHHHHHHHHHcCCEeccCCccCC-CCcEEEEEECCCCCEEEEec
Confidence 99999999999999999987665443 34467899999999999986
No 47
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.79 E-value=5.4e-18 Score=112.60 Aligned_cols=116 Identities=20% Similarity=0.369 Sum_probs=82.3
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCC---cceeEEec----CCcEEEEeecCCCCCCCCCCCCCCCceEEE
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFN---FDGAWLFG----HGIGIHLLQSENPDSLPKKSVINPKDNHLS 85 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~---~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~ 85 (168)
+++||+|.|+|++++++||+++|||+...+....+ ....++.. ++..++++....... + ......+..|++
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~-~~~~~~~~~hi~ 78 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGP-K-GRRGPGQIHHIA 78 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCC-C-CCCCCCcEEEEE
Confidence 47899999999999999999999999876543211 11223322 344677766544321 1 112234678999
Q ss_pred EEeC---CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEE
Q 030972 86 FQCE---SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEIC 133 (168)
Q Consensus 86 ~~v~---dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 133 (168)
|.++ ++++++++++++|+++...+.. . +.+.+||+||+||.|||+
T Consensus 79 f~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~--~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 79 FSVPSEASLDAWRERLRAAGVPVSGVVDH-F--GERSIYFEDPDGLRLELT 126 (126)
T ss_pred EEcCCHHHHHHHHHHHHHcCCcccceEee-c--ceEEEEEECCCCCEEEeC
Confidence 9998 5799999999999998654332 2 347799999999999985
No 48
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.79 E-value=1.5e-17 Score=112.12 Aligned_cols=116 Identities=25% Similarity=0.372 Sum_probs=83.5
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecC---CcEEEEeecCCCCCCCCCCCCCCCceEEEEEeC
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGH---GIGIHLLQSENPDSLPKKSVINPKDNHLSFQCE 89 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~ 89 (168)
+|+|++|.|+|++++++||+++||+++...... ....|+..+ ...+.++....... .....+..|++|.|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~h~~f~v~ 74 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--GGLVFLSRDPDEHHQIALITGRPAAP----PPGPAGLNHIAFEVD 74 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--CcEEEEEecCCCceEEEEEecCCCCC----CCCCCCceEEEEEeC
Confidence 589999999999999999999999998765431 134455443 23566654433211 122357789999998
Q ss_pred CHH---HHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 90 SVG---NVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 90 dl~---~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
|++ +++++|.++|+++...... + ..+.+||.||+||.|||++...
T Consensus 75 ~~~~v~~~~~~l~~~G~~~~~~~~~--~-~~~~~~~~DP~G~~ie~~~~~~ 122 (134)
T cd08348 75 SLDDLRDLYERLRAAGITPVWPVDH--G-NAWSIYFRDPDGNRLELFVDTP 122 (134)
T ss_pred CHHHHHHHHHHHHHCCCCccccCCC--C-ceeEEEEECCCCCEEEEEEcCC
Confidence 765 5789999999998764321 2 2367999999999999998654
No 49
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.78 E-value=5e-18 Score=111.08 Aligned_cols=109 Identities=23% Similarity=0.415 Sum_probs=80.1
Q ss_pred eEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeC--CHHH
Q 030972 16 HVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCE--SVGN 93 (168)
Q Consensus 16 hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~--dl~~ 93 (168)
|+.|.|+|++++++||+++||++...+.+ ...++..++..+.+...... . ....+..|++|.|+ ++++
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~----~~~~~~~~~~~l~~~~~~~~---~---~~~~~~~hiaf~v~~~d~~~ 70 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS----KEAYFELAGLWICLMEEDSL---Q---GPERTYTHIAFQIQSEEFDE 70 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC----ceeEEEecCeEEEeccCCCc---C---CCCCCccEEEEEcCHHHHHH
Confidence 89999999999999999999999876653 34455555555554432221 1 11346789999995 7999
Q ss_pred HHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEee
Q 030972 94 VEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 94 ~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
++++++++|+++........ .+.+.+|++|||||.|||...
T Consensus 71 ~~~~l~~~G~~~~~~~~~~~-~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 71 YTERLKALGVEMKPERPRVQ-GEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHcCCccCCCccccC-CCceEEEEECCCCCEEEEEeC
Confidence 99999999999865432222 234679999999999999863
No 50
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.78 E-value=2.1e-17 Score=109.68 Aligned_cols=118 Identities=13% Similarity=0.084 Sum_probs=82.0
Q ss_pred EEEEeCCHHHHHHHHHHccCCeeeccCC--CCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeCCHHHH
Q 030972 17 VSLVCRNISESIDFYQNVLGFVPIRRPG--SFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCESVGNV 94 (168)
Q Consensus 17 v~l~v~D~~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~dl~~~ 94 (168)
-.|.|+|++++++||+++||++...... ......+.+..++..+.+.................+..|++|.|+|++++
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d~~ 82 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVDAH 82 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCcccccccccCCCceEEEEEEECCHHHH
Confidence 4688999999999999999999986532 11111223444454555544333211110112235668999999999999
Q ss_pred HHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEee
Q 030972 95 EKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 95 ~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
+++|+++|+++..++.... ++.+.++++|||||.|+|.++
T Consensus 83 ~~~l~~~G~~v~~~~~~~~-~g~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 83 YERARAAGAEILREPTDTP-YGSREFTARDPEGNLWTFGTY 122 (122)
T ss_pred HHHHHHCCCEEeeCccccC-CCcEEEEEECCCCCEEEEecC
Confidence 9999999999987765443 334669999999999999864
No 51
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.78 E-value=5.3e-18 Score=115.70 Aligned_cols=112 Identities=19% Similarity=0.151 Sum_probs=81.1
Q ss_pred eeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCc-EEEEeecCCCCCCCCCCCCCCCceEEEEEeCCH--
Q 030972 15 NHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGI-GIHLLQSENPDSLPKKSVINPKDNHLSFQCESV-- 91 (168)
Q Consensus 15 ~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~dl-- 91 (168)
+||.|.|+|++++++||+++|||+...+... ..+|+...+. ..+.+.... ....+++|++|.|+|+
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~---~~~~l~~~~~~~~h~~~~~~--------~~~~gl~Hiaf~v~~~~~ 69 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED---RIVFMRCHPNPFHHTFAVGP--------ASSSHFHHVNFMVTDIDD 69 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC---EEEEEEcCCCCCcceeeecc--------CCCCceEEEEEECCCHHH
Confidence 5999999999999999999999998765431 3466654332 122221111 1235889999999854
Q ss_pred -HHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 92 -GNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 92 -~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
++++++|+++|+++...|........+.+||+||+|+.|||+....
T Consensus 70 v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~ 116 (141)
T cd07258 70 IGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGME 116 (141)
T ss_pred HHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcc
Confidence 5679999999999876665433234467999999999999998653
No 52
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.78 E-value=1.2e-17 Score=111.09 Aligned_cols=116 Identities=19% Similarity=0.210 Sum_probs=77.0
Q ss_pred eEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCC---CCCCCCCCCCceEEEE--EeCC
Q 030972 16 HVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDS---LPKKSVINPKDNHLSF--QCES 90 (168)
Q Consensus 16 hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~hl~~--~v~d 90 (168)
||.|.|+|++++++||+++|||++..... ....+..++..+.+........ .........+..|++| .++|
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~d 77 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----TWVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSEEE 77 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----CcccccccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEEeHHH
Confidence 99999999999999999999999865432 1122223344444433222111 0011111224467654 5679
Q ss_pred HHHHHHHHHHcCCeEEeeeeee-CC--eeEEEEEEECCCCCEEEEEee
Q 030972 91 VGNVEKFLKEMGIKYVRALVEE-GG--ILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 91 l~~~~~~l~~~g~~~~~~~~~~-~g--~~~~~~~~~DPdG~~iel~~~ 135 (168)
+++++++|+++|+++..++... .+ ...+.+||.|||||.|||..+
T Consensus 78 v~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 125 (125)
T cd08357 78 FDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKAF 125 (125)
T ss_pred HHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEeeC
Confidence 9999999999999998665432 11 234779999999999999863
No 53
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.76 E-value=3.6e-17 Score=110.13 Aligned_cols=113 Identities=27% Similarity=0.338 Sum_probs=81.4
Q ss_pred eeEEEEeCCHHHHHHHHHHccCCeeeccCCC-CCcceeEEecCCc--EEEEeecCCCCCCCCCCCCCCCceEEEEEeCCH
Q 030972 15 NHVSLVCRNISESIDFYQNVLGFVPIRRPGS-FNFDGAWLFGHGI--GIHLLQSENPDSLPKKSVINPKDNHLSFQCESV 91 (168)
Q Consensus 15 ~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~dl 91 (168)
+||.|.|+|++++++||+++||++....... .....+|+..++. .+.+..... ..+..|++|.|+|+
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~hl~~~v~d~ 70 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFPGPE----------RPGLHHVAFEVESL 70 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEcCCC----------CCCeeEEEEEcCCH
Confidence 5999999999999999999999998654321 1123456554432 233332110 34789999999976
Q ss_pred H---HHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 92 G---NVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 92 ~---~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
+ +++++|+++|+++...+...+....+.++|.||+||.|||.+...
T Consensus 71 ~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 71 DDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 4 688999999999986654333223466899999999999998654
No 54
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.76 E-value=3.2e-17 Score=108.89 Aligned_cols=113 Identities=21% Similarity=0.235 Sum_probs=79.6
Q ss_pred eeeEEEEeCCHHHHHHHHHHc---cCCeeeccCCCCCcceeEEecC--CcEEEEeecCCCCCCCCCCCCCCCceEEEEEe
Q 030972 14 VNHVSLVCRNISESIDFYQNV---LGFVPIRRPGSFNFDGAWLFGH--GIGIHLLQSENPDSLPKKSVINPKDNHLSFQC 88 (168)
Q Consensus 14 l~hv~l~v~D~~~a~~FY~~~---LG~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v 88 (168)
++|+.|.|+|++++++||+++ ||++...... + ..+++... +..+.+...... .+ ....+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~--~~---~~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG--P-GAVGYGKGGGGPDFWVTKPFDG--EP---ATAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC--C-ceeEeccCCCCceEEEeccccC--CC---CCCCCceEEEEEC
Confidence 579999999999999999998 6998876541 1 22333332 345666543321 11 1123457999999
Q ss_pred CC---HHHHHHHHHHcCCeEEeeeeeeC--CeeEEEEEEECCCCCEEEEEe
Q 030972 89 ES---VGNVEKFLKEMGIKYVRALVEEG--GILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 89 ~d---l~~~~~~l~~~g~~~~~~~~~~~--g~~~~~~~~~DPdG~~iel~~ 134 (168)
++ ++++++++.++|+.+...+.... +...+.+||.|||||.|||+.
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~~ 123 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAVC 123 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEeC
Confidence 86 78889999999999876654332 234467999999999999973
No 55
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.76 E-value=4.6e-17 Score=106.11 Aligned_cols=109 Identities=21% Similarity=0.287 Sum_probs=80.0
Q ss_pred EEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHH
Q 030972 18 SLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCESVGNVEKF 97 (168)
Q Consensus 18 ~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~dl~~~~~~ 97 (168)
.|.|+|++++++||+++|||+....... ....++..++..+++......... ...+..|++|.++|++++.++
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 75 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHPE--PGYAFLSRGGAQLMLSEHDGDEPV-----PLGRGGSVYIEVEDVDALYAE 75 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcCC--CcEEEEEeCCEEEEEeccCCCCCC-----CCCCcEEEEEEeCCHHHHHHH
Confidence 5899999999999999999998776531 133445556666776654432110 234667999999999999999
Q ss_pred HHHcCCe-EEeeeeeeCCeeEEEEEEECCCCCEEEEEe
Q 030972 98 LKEMGIK-YVRALVEEGGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 98 l~~~g~~-~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 134 (168)
++++|+. +..++.... .+.+.++|+||+||.|||++
T Consensus 76 l~~~G~~~~~~~~~~~~-~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 76 LKAKGADLIVYPPEDQP-WGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHcCCcceecCccCCC-cccEEEEEECCCCCEEEecC
Confidence 9999998 444443322 33467999999999999975
No 56
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.76 E-value=6.4e-17 Score=106.07 Aligned_cols=109 Identities=21% Similarity=0.319 Sum_probs=79.4
Q ss_pred EEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEe-cCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeCC---HH
Q 030972 17 VSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLF-GHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCES---VG 92 (168)
Q Consensus 17 v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d---l~ 92 (168)
+.|.|+|++++++||+++||++...... ...++. .++..+.++........ .....+..|++|.+++ ++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~ 74 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP----TFALFVLGSGVKLGLWSRHTVEPA---SDATGGGSELAFMVDDGAAVD 74 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC----ceEEEEeCCCcEEEEeeccccCCC---CCCCCCceEEEEEcCCHHHHH
Confidence 6789999999999999999999776432 123333 34556777654432111 1124567899999975 88
Q ss_pred HHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEe
Q 030972 93 NVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 93 ~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 134 (168)
+++++++++|+++..++...+ ++ +.++|+|||||.|||+.
T Consensus 75 ~~~~~~~~~g~~v~~~~~~~~-~g-~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 75 ALYAEWQAKGVKIIQEPTEMD-FG-YTFVALDPDGHRLRVFA 114 (114)
T ss_pred HHHHHHHHCCCeEecCccccC-Cc-cEEEEECCCCCEEEeeC
Confidence 899999999999987765432 23 56899999999999973
No 57
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.76 E-value=3.1e-17 Score=109.28 Aligned_cols=115 Identities=20% Similarity=0.208 Sum_probs=78.5
Q ss_pred eeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecC-CcEEEEeecCCCCC---CCCCCCCCCCceEEEEEeC-
Q 030972 15 NHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGH-GIGIHLLQSENPDS---LPKKSVINPKDNHLSFQCE- 89 (168)
Q Consensus 15 ~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~---~~~~~~~~~~~~hl~~~v~- 89 (168)
.++.|.|+|++++++||++ |||+........ ...++..+ +..+.+........ .........+..|++|.|+
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~--~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~v~~ 78 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDE--KAACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLSADS 78 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCC--CeEEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEeCCC
Confidence 5899999999999999987 899976533211 22333333 44565654321100 0000012345579999998
Q ss_pred --CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEe
Q 030972 90 --SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 90 --dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 134 (168)
++++++++++++|+++..++...++ .+.+||+|||||.|||++
T Consensus 79 ~~~vd~~~~~l~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 79 REEVDELVEKALAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred HHHHHHHHHHHHHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 5888999999999999876654432 356899999999999985
No 58
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.76 E-value=6.1e-17 Score=105.91 Aligned_cols=106 Identities=20% Similarity=0.213 Sum_probs=76.8
Q ss_pred eEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecC---CcEEEEeecCCCCCCCCCCCCCCCceEEEEEeCCHH
Q 030972 16 HVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGH---GIGIHLLQSENPDSLPKKSVINPKDNHLSFQCESVG 92 (168)
Q Consensus 16 hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~dl~ 92 (168)
+..|.|+|++++++||+++|||+...... ...++... ...+.+...... .....|++|.|+|++
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~v~d~~ 69 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMDHG----WIATFASPQNMTVQVSLATEGGT---------ATVVPDLSIEVDDVD 69 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEcCC----ceEEEeecCCCCcEEEEecCCCC---------CCCCCEEEEEeCCHH
Confidence 45789999999999999999999865321 22333322 233444332211 124579999999999
Q ss_pred HHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEee
Q 030972 93 NVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 93 ~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
+++++|+++|+++...+.... ++.+.++|.||+||.|||++.
T Consensus 70 ~~~~~l~~~G~~~~~~~~~~~-~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 70 AALARAVAAGFAIVYGPTDEP-WGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHHhcCCeEecCCccCC-CceEEEEEECCCCCEEEEEEc
Confidence 999999999999887665433 344679999999999999974
No 59
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.76 E-value=6.8e-17 Score=106.94 Aligned_cols=111 Identities=22% Similarity=0.354 Sum_probs=78.6
Q ss_pred eeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeCC---H
Q 030972 15 NHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCES---V 91 (168)
Q Consensus 15 ~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d---l 91 (168)
.|+.|.|+|++++.+||+++||++...+.+. ...|.. .+..+.+........ ...+..|++|.+++ +
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~------~~~~~~h~~f~v~~~~dl 72 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRDD---YAKFLL-EDPRLNFVLNERPGA------PGGGLNHLGVQVDSAEEV 72 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccCC---eeEEEe-cCCceEEEEecCCCC------CCCCeeEEEEEeCCHHHH
Confidence 4999999999999999999999987665431 223333 223344333222111 01477899999986 7
Q ss_pred HHHHHHHHHcCCeEEeeeeeeC-CeeEEEEEEECCCCCEEEEEee
Q 030972 92 GNVEKFLKEMGIKYVRALVEEG-GILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 92 ~~~~~~l~~~g~~~~~~~~~~~-g~~~~~~~~~DPdG~~iel~~~ 135 (168)
++++++|.++|+++...+.... +...+.+|++||+||.|||.+.
T Consensus 73 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 73 AEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred HHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEe
Confidence 8899999999999876543221 1234679999999999999974
No 60
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.76 E-value=3.5e-17 Score=108.58 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=77.7
Q ss_pred eeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecC-CcEEEEeecCCCCC-CCCCCCCCCCceEEEEEeC--
Q 030972 14 VNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGH-GIGIHLLQSENPDS-LPKKSVINPKDNHLSFQCE-- 89 (168)
Q Consensus 14 l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-~~~~~~~~~~~~hl~~~v~-- 89 (168)
++||+|.|+|+++|++||+. |||+........ ..+.+..+ +..+.+........ .+.......+..|++|.+.
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~~--~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADDE--PHVEAVLPGGVRLAWDTVESIRSFTPGWTPTGGHRIALAFLCETP 77 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCCC--CcEEEEeCCCEEEEEEcccceeeecCCCCCCCCCcEEEEEEcCCH
Confidence 57999999999999999976 999976543311 12333333 44444433211100 0111112335678889875
Q ss_pred -CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEe
Q 030972 90 -SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 90 -dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 134 (168)
|+++++++|+++|+++...+...+ ++.+.++|+|||||.|||+.
T Consensus 78 ~dvd~~~~~l~~~G~~~~~~~~~~~-~g~~~~~~~DPdG~~iel~~ 122 (122)
T cd07235 78 AEVDALYAELVGAGYPGHKEPWDAP-WGQRYAIVKDPDGNLVDLFA 122 (122)
T ss_pred HHHHHHHHHHHHCCCCcCCCCccCC-CCCEEEEEECCCCCEEEEeC
Confidence 899999999999999876654332 34466999999999999973
No 61
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.76 E-value=8.1e-17 Score=106.47 Aligned_cols=116 Identities=17% Similarity=0.043 Sum_probs=82.3
Q ss_pred eEEEEeCCHHHHHHHHHHccCCeeeccCC--CCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeCCHHH
Q 030972 16 HVSLVCRNISESIDFYQNVLGFVPIRRPG--SFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCESVGN 93 (168)
Q Consensus 16 hv~l~v~D~~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~dl~~ 93 (168)
.+.|.|+|++++.+||+++||++...... ........+..++..+.+........ . ......+..|++|.|+|+++
T Consensus 4 ~~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~~~~v~d~~~ 81 (122)
T cd07246 4 TPYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFPEHG-S-PASWGGTPVSLHLYVEDVDA 81 (122)
T ss_pred eEEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCcccC-C-CCCCCCceEEEEEEeCCHHH
Confidence 35689999999999999999999876533 11112233444555666654332211 1 11223456899999999999
Q ss_pred HHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEe
Q 030972 94 VEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 94 ~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 134 (168)
+++++.++|+++..++.... .+.+.++++||+||.|+|.+
T Consensus 82 ~~~~l~~~G~~~~~~~~~~~-~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 82 TFARAVAAGATSVMPPADQF-WGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHHCCCeEecCccccc-ccceEEEEECCCCCEEEEec
Confidence 99999999999987765332 34577999999999999986
No 62
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.76 E-value=5.6e-17 Score=107.49 Aligned_cols=108 Identities=15% Similarity=0.193 Sum_probs=78.1
Q ss_pred eEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeCCHHHHH
Q 030972 16 HVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCESVGNVE 95 (168)
Q Consensus 16 hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~dl~~~~ 95 (168)
...|.|+|++++++||++ |||+...+... .-+++..++..+++...... . ......|++|.|+|+++++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~~~~~~~~~~~l~l~~~~~~--~-----~~~~~~~~~~~v~dvd~~~ 73 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA---GYMILRRGDLELHFFAHPDL--D-----PATSPFGCCLRLPDVAALH 73 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC---CEEEEEcCCEEEEEEecCcC--C-----CCCCcceEEEEeCCHHHHH
Confidence 468899999999999999 99998765432 22344555667777654321 1 1123468999999999999
Q ss_pred HHHHHcCCeEEe-------eeeeeCCeeEEEEEEECCCCCEEEEEee
Q 030972 96 KFLKEMGIKYVR-------ALVEEGGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 96 ~~l~~~g~~~~~-------~~~~~~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
++|+++|+++.. .+... .++.+.++|+|||||.|||.+.
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~~~~~-~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 74 AEFRAAGLPETGSGIPRITPPEDQ-PWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHhCccccccCCCcccCCcCC-CCceeEEEEECCCCCEEEeecC
Confidence 999999998531 11111 2345779999999999999873
No 63
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.75 E-value=2.4e-17 Score=106.95 Aligned_cols=104 Identities=29% Similarity=0.365 Sum_probs=75.2
Q ss_pred EEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCC----cEEEEeecCCCCCCCCCCCCCCCceEEEEEeCCHHHH
Q 030972 19 LVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHG----IGIHLLQSENPDSLPKKSVINPKDNHLSFQCESVGNV 94 (168)
Q Consensus 19 l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~dl~~~ 94 (168)
|.|+|++++++||+++|||+...... ..+.+..+. ....+...... . ....+..|++|.|+|++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~v~dv~~~ 70 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVDFSLGFRFHDGVIEFLQFPDP-P-----GPPGGGFHLCFEVEDVDAL 70 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEEEEETEEEEEEEEEEEEEESS-S-----SSSSSEEEEEEEESHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEEEEeccchhhhhHHHccCCcc-c-----cCCCceeEEEEEEcCHHHH
Confidence 68999999999999999999988433 223333321 11233333221 1 2245789999999999999
Q ss_pred HHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEE
Q 030972 95 EKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEIC 133 (168)
Q Consensus 95 ~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 133 (168)
+++++++|+++...+.... ++.+.+++.|||||.|||+
T Consensus 71 ~~~l~~~G~~~~~~~~~~~-~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 71 YERLKELGAEIVTEPRDDP-WGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHHHTTSEEEEEEEEET-TSEEEEEEE-TTS-EEEEE
T ss_pred HHHHHHCCCeEeeCCEEcC-CCeEEEEEECCCCCEEEeC
Confidence 9999999999988776654 2457799999999999986
No 64
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=1.1e-16 Score=105.83 Aligned_cols=116 Identities=19% Similarity=0.304 Sum_probs=81.9
Q ss_pred eeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCC-cEEEEeecCCCCCCC--CCCCCCCCceEEEEEe--
Q 030972 14 VNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHG-IGIHLLQSENPDSLP--KKSVINPKDNHLSFQC-- 88 (168)
Q Consensus 14 l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~--~~~~~~~~~~hl~~~v-- 88 (168)
+.++.|.|.|++++++||+++|||++..+... ..+++..++ ..+.++......... .......+..|++|.+
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~~---~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 77 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKEDR---RLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAIPA 77 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecCCC---ceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCCccEEEEEcCH
Confidence 45899999999999999999999998874221 234555554 445555433221000 0111234678999998
Q ss_pred CCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEe
Q 030972 89 ESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 89 ~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 134 (168)
+|++++++++.++|+++...+... .+.+.++|.|||||.|||++
T Consensus 78 ~dl~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 78 EELAEWEAHLEAKGVAIESEVQWP--RGGRSLYFRDPDGNLLELAT 121 (122)
T ss_pred HHHHHHHHHHHhcCCceeccccCC--CCeeEEEEECCCCCEEEEec
Confidence 489999999999999987654322 23467999999999999986
No 65
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.75 E-value=4.3e-17 Score=124.30 Aligned_cols=120 Identities=20% Similarity=0.234 Sum_probs=80.8
Q ss_pred CCccceeeeEEEEeCCHHHHHHHHHHccCCeeeccCC--CCCc-ceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEE
Q 030972 8 PLHLKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPG--SFNF-DGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHL 84 (168)
Q Consensus 8 ~~~~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~--~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl 84 (168)
.+.+++|+||+|.|+|++++++||+++|||+...+.. .... ...|+..++. .+.+..... ...++.+|+
T Consensus 140 ~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~g~~~Hi 211 (303)
T TIGR03211 140 GVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK-AHDIAFVGD-------PEPGKLHHV 211 (303)
T ss_pred CcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC-CcccceecC-------CCCCceEEE
Confidence 3567899999999999999999999999999765421 1111 2344433221 111110000 111237899
Q ss_pred EEEeCC---HHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEee
Q 030972 85 SFQCES---VGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 85 ~~~v~d---l~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
||.|+| +++++++|+++|+++..+|...+....+++||.||+||.|||...
T Consensus 212 af~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 265 (303)
T TIGR03211 212 SFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFGG 265 (303)
T ss_pred EEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEecC
Confidence 999986 555788999999998766543332234679999999999999844
No 66
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.75 E-value=6.9e-17 Score=105.83 Aligned_cols=103 Identities=17% Similarity=0.289 Sum_probs=71.7
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEec-CCc--EEEEeecCCCCCCCCCCCCCCCceE--EEEE
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFG-HGI--GIHLLQSENPDSLPKKSVINPKDNH--LSFQ 87 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~-~~~--~~~l~~~~~~~~~~~~~~~~~~~~h--l~~~ 87 (168)
+|+||.|.|.|++++.+||+ +|||++..+.+ ..++.. +.. .+.+.... ..+..| +.+.
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 64 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEGD-----GLELRTAGNDHRWARLLEGA-----------RKRLAYLSFGIF 64 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeecC-----ceEEEecCCCceEEEeecCC-----------CCceeeEEEEeE
Confidence 68999999999999999998 69999875432 233322 222 22222211 112344 4555
Q ss_pred eCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEee
Q 030972 88 CESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 88 v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
++|+++++++|+++|+++...+.. .+ .+.+||.||+||.|||...
T Consensus 65 ~~d~~~~~~~l~~~Gi~~~~~~~~-~~--~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 65 EDDFAAFARHLEAAGVALAAAPPG-AD--PDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred hhhHHHHHHHHHHcCCceecCCCc-CC--CCEEEEECCCCCEEEEecC
Confidence 579999999999999998765422 22 2459999999999999964
No 67
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.74 E-value=6.8e-17 Score=104.11 Aligned_cols=112 Identities=29% Similarity=0.431 Sum_probs=85.7
Q ss_pred eEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeCCHHHHH
Q 030972 16 HVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCESVGNVE 95 (168)
Q Consensus 16 hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~dl~~~~ 95 (168)
|+.+.|+|++++.+||+++||++............+++..++..+++......... ....+..|++|.++|+++++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~ 76 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLGGTRLELFEGDEPAPA----PSGGGGVHLAFEVDDVDAAY 76 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCCEEEEEEecCCceEEEecCCCCCCc----ccCCCeeEEEEECCCHHHHH
Confidence 88999999999999999999999887654211234555555667888776554221 23457789999999999999
Q ss_pred HHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEE
Q 030972 96 KFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEI 132 (168)
Q Consensus 96 ~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel 132 (168)
++|+++|+.+...+.... .+.+.+++.||+||.|||
T Consensus 77 ~~l~~~g~~~~~~~~~~~-~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 77 ERLKAAGVEVLGEPREEP-WGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHcCCcccCCCcCCC-CCcEEEEEECCCCcEEeC
Confidence 999999999887654222 234679999999999986
No 68
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.74 E-value=1e-16 Score=105.37 Aligned_cols=104 Identities=19% Similarity=0.284 Sum_probs=76.3
Q ss_pred EEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeCCHHHHHH
Q 030972 17 VSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCESVGNVEK 96 (168)
Q Consensus 17 v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~dl~~~~~ 96 (168)
..|.|+|++++++||++ |||+.....+ ..+++..++..+.+....... ..+..+++|.|+|++++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~----~~~~l~~~~~~l~l~~~~~~~--------~~~~~~~~~~v~did~~~~ 71 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND----NLAYFRLGNCAFYLQDYYVKD--------WAENSMLHLEVDDLEAYYE 71 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC----CEEEEEcCCEEEEeecCCCcc--------cccCCEEEEEECCHHHHHH
Confidence 46889999999999998 9999987643 346666666666654322111 1234689999999999999
Q ss_pred HHHHcCCeEEe-----eeeeeCCeeEEEEEEECCCCCEEEEEe
Q 030972 97 FLKEMGIKYVR-----ALVEEGGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 97 ~l~~~g~~~~~-----~~~~~~g~~~~~~~~~DPdG~~iel~~ 134 (168)
+|+++|+++.. .+... .++.+.++|+|||||.|+|.+
T Consensus 72 ~l~~~G~~~~~~~~~~~~~~~-~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 72 HIKALGLPKKFPGVKLPPITQ-PWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHcCCcccccceecCcccc-CCCcEEEEEECCCccEEEeeC
Confidence 99999987532 22222 234578999999999999874
No 69
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.73 E-value=2.8e-16 Score=104.92 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=72.3
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCC-------------cceeEEec----CCcEEEEeecCCCCCCCCCC
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFN-------------FDGAWLFG----HGIGIHLLQSENPDSLPKKS 75 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~-------------~~~~~~~~----~~~~~~l~~~~~~~~~~~~~ 75 (168)
++.|++|.|+|+++|++||+++|||+...+....+ +..+++.. .+..++|.........
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~---- 77 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDY---- 77 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCC----
Confidence 67899999999999999999999999866432111 11122322 1234556543332111
Q ss_pred CCCCCceEEEEEeCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEe
Q 030972 76 VINPKDNHLSFQCESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 76 ~~~~~~~hl~~~v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 134 (168)
..+.+ |++|.|++. ++.++|+++|+++...+. + .+|+.||||+.|||+.
T Consensus 78 ~~g~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~---~----~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 78 ELGND--FLGITIHSK-QAVSNAKKHNWPVTEVED---G----VYEVKAPGGYKFYLID 126 (127)
T ss_pred CCCCC--EEEEEEECH-HHHHHHHHCCCceecCCC---C----EEEEECCCCCEEEEec
Confidence 11223 666666666 556999999999876432 2 4899999999999984
No 70
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.72 E-value=2e-16 Score=120.07 Aligned_cols=118 Identities=23% Similarity=0.385 Sum_probs=80.6
Q ss_pred CccceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCC--CCcceeEEecCCc--EEEEeecCCCCCCCCCCCCCCCceEE
Q 030972 9 LHLKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGS--FNFDGAWLFGHGI--GIHLLQSENPDSLPKKSVINPKDNHL 84 (168)
Q Consensus 9 ~~~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~--~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~hl 84 (168)
+.+.+++||+|.|+|++++.+||+++|||+....... ......|+...+. .+.+.. ....+.+|+
T Consensus 132 ~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~Hi 200 (294)
T TIGR02295 132 VSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGGVHDIALTN-----------GNGPRLHHI 200 (294)
T ss_pred ccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCCcCceEeec-----------CCCCceeeE
Confidence 4678999999999999999999999999998654321 1112344432221 122211 113578999
Q ss_pred EEEeCC---HHHHHHHHHHcCCe--EEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 85 SFQCES---VGNVEKFLKEMGIK--YVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 85 ~~~v~d---l~~~~~~l~~~g~~--~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
||.|+| ++++.++|+++|++ +...|........+++|++||+||.|||++...
T Consensus 201 af~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 258 (294)
T TIGR02295 201 AYWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGDY 258 (294)
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEeccc
Confidence 999997 55568999999997 543433222113466999999999999998643
No 71
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.72 E-value=2.4e-16 Score=119.33 Aligned_cols=114 Identities=15% Similarity=0.203 Sum_probs=82.1
Q ss_pred cceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeCC
Q 030972 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCES 90 (168)
Q Consensus 11 ~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d 90 (168)
+.+++|++|.|+|++++++||+++|||+...+... ...|+..+.....+...... ..+..|++|.|++
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~~---~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~f~V~~ 68 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGEN---DALYLRLDSRAHRIAVHPGE---------SDDLAYAGWEVAD 68 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCCC---ceEEEEcCCCceEEEEEECC---------cCCeeeEeeeeCC
Confidence 46899999999999999999999999987654331 23454554332223222221 1256799999997
Q ss_pred ---HHHHHHHHHHcCCeEEeeeeee--CCeeEEEEEEECCCCCEEEEEeeC
Q 030972 91 ---VGNVEKFLKEMGIKYVRALVEE--GGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 91 ---l~~~~~~l~~~g~~~~~~~~~~--~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
++++.++|+++|+++...+... .....+.++|.|||||.|||+...
T Consensus 69 ~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~ 119 (286)
T TIGR03213 69 EAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGA 119 (286)
T ss_pred HHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcc
Confidence 8899999999999987654311 111346699999999999999854
No 72
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.71 E-value=2e-16 Score=120.58 Aligned_cols=111 Identities=22% Similarity=0.341 Sum_probs=81.7
Q ss_pred cceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecC----CcEEEEeecCCCCCCCCCCCCCCCceEEEE
Q 030972 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGH----GIGIHLLQSENPDSLPKKSVINPKDNHLSF 86 (168)
Q Consensus 11 ~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~ 86 (168)
+++++|+.|.|+|++++++||+++|||+...+.. ..+++... ...+.+... ...+..|++|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~-----------~~~g~~hiaf 66 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDG----QRVYLKAWDEWDHYSVILTEA-----------DTAGLDHMAF 66 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC----ceEEEEeccccccceEeeccC-----------CCCceeEEEE
Confidence 5689999999999999999999999999876543 23344321 122222211 1236799999
Q ss_pred EeC---CHHHHHHHHHHcCCeEEeeeee-eCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 87 QCE---SVGNVEKFLKEMGIKYVRALVE-EGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 87 ~v~---dl~~~~~~l~~~g~~~~~~~~~-~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
.|+ ++++++++|+++|+++...+.. ..+ ..+.+||.|||||.|||++...
T Consensus 67 ~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~-~g~~~~~~DPdG~~iEl~~~~~ 120 (303)
T TIGR03211 67 KVESEADLERLVKRLEAYGVGTGWIPAGELPG-VGRRVRFTLPSGHTMELYAEKE 120 (303)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeeeccCCCCCC-cceEEEEECCCCCEEEEEEccc
Confidence 997 7889999999999998765431 122 2356999999999999998654
No 73
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=5.6e-16 Score=102.30 Aligned_cols=114 Identities=20% Similarity=0.217 Sum_probs=79.8
Q ss_pred EEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCC--CCCCCCCCCCceEEEEEe---CCH
Q 030972 17 VSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDS--LPKKSVINPKDNHLSFQC---ESV 91 (168)
Q Consensus 17 v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~hl~~~v---~dl 91 (168)
|.|.|+|++++.+||+++|||++..+.. ....++..++..+.+++...... .........+..|++|.+ +|+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 78 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSN---DGVAFFQLGGLVLALFPREELAKDAGVPVPPPGFSGITLAHNVRSEEEV 78 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCC---CceEEEEcCCeEEEEecchhhhhhcCCCCCCCCccceEEEEEcCCHHHH
Confidence 6899999999999999999999876622 13455655666677665332111 000101223455677765 589
Q ss_pred HHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEe
Q 030972 92 GNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 92 ~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 134 (168)
+++++++++.|+++...+...+ ++.+.++|.||+||+|||..
T Consensus 79 ~~~~~~l~~~G~~~~~~~~~~~-~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 79 DAVLARAAAAGATIVKPPQDVF-WGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHHHhCCCEEecCCccCC-CCceEEEEECCCCCEEEEee
Confidence 9999999999999986654332 33577999999999999975
No 74
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.71 E-value=3.9e-16 Score=118.21 Aligned_cols=117 Identities=16% Similarity=0.236 Sum_probs=80.5
Q ss_pred cceeeeEEEEeCCHHHHHHHHHHccCCeeeccCC---CCC--cceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEE
Q 030972 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPG---SFN--FDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLS 85 (168)
Q Consensus 11 ~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~---~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~ 85 (168)
..+|+||.|.|+|++++.+||+++|||+...... ..+ ...+|+..++....+..... ....+.+|++
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~l~~~--------~~~~~~~Hia 211 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHHSLAFAAG--------PSEKRLNHLM 211 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcceEEEecC--------CCCCceEEEE
Confidence 4689999999999999999999999999765421 111 12455554432211211111 1134789999
Q ss_pred EEeCCHHH---HHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeC
Q 030972 86 FQCESVGN---VEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 86 ~~v~dl~~---~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
|.|+|+++ +.++|+++|+ ....+........+++||+||+||+|||....
T Consensus 212 f~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~~ 264 (286)
T TIGR03213 212 LEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWGA 264 (286)
T ss_pred EEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecCc
Confidence 99997776 7999999999 44333322223457799999999999998754
No 75
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.69 E-value=9.1e-16 Score=116.50 Aligned_cols=108 Identities=21% Similarity=0.303 Sum_probs=81.2
Q ss_pred cceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecC--C--cEEEEeecCCCCCCCCCCCCCCCceEEEE
Q 030972 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGH--G--IGIHLLQSENPDSLPKKSVINPKDNHLSF 86 (168)
Q Consensus 11 ~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~--~--~~~~l~~~~~~~~~~~~~~~~~~~~hl~~ 86 (168)
+.+++||.|.|+|++++++||+++|||++..+.. ..+|+... . ..+.+.. .. ..+..|++|
T Consensus 2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~----~~~~~~~~~~~~~~~l~l~~--~~---------~~~~~hiaf 66 (294)
T TIGR02295 2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESDK----EYIYLRGIEEFQHHSLVLTK--AP---------SAALSYIGF 66 (294)
T ss_pred CceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC----CeEEEeccCcCCceEEEeee--CC---------CcCccEEEE
Confidence 6789999999999999999999999999876543 23445322 1 1222221 11 236789999
Q ss_pred EeC---CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeC
Q 030972 87 QCE---SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 87 ~v~---dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
.|+ |+++++++|+++|+++...+... ..+.+||+|||||.|||++..
T Consensus 67 ~v~~~~dl~~~~~~l~~~Gv~v~~~~~~~---~~~~~~~~DPdG~~iEl~~~~ 116 (294)
T TIGR02295 67 RVSKEEDLDKAADFFQKLGHPVRLVRDGG---QPEALRVEDPFGYPIEFYFEM 116 (294)
T ss_pred EeCCHHHHHHHHHHHHhcCCcEEeecCCC---CceEEEEECCCCCEEEEEEch
Confidence 997 78899999999999987654321 237799999999999999854
No 76
>PLN02300 lactoylglutathione lyase
Probab=99.65 E-value=5.3e-15 Score=112.04 Aligned_cols=123 Identities=18% Similarity=0.205 Sum_probs=88.2
Q ss_pred cceeeeEEEEeCCHHHHHHHHHHccCCeeeccCC--CCCcceeEEecCC----cEEEEeecCCCCCCCCCCCCCCCceEE
Q 030972 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPG--SFNFDGAWLFGHG----IGIHLLQSENPDSLPKKSVINPKDNHL 84 (168)
Q Consensus 11 ~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~hl 84 (168)
..++.|+.|.|+|++++.+||+++|||+...... ..++...++..++ ..+++...... .....+++..|+
T Consensus 152 ~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~----~~~~~g~~~~~i 227 (286)
T PLN02300 152 PEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGV----TEYTKGNAYAQI 227 (286)
T ss_pred CCcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCC----CccccCCceeEE
Confidence 4578899999999999999999999999875422 1233344443222 12333221111 011224577899
Q ss_pred EEEeCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 85 SFQCESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 85 ~~~v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
+|.|+|+++++++++++|+++..+|...++...+.++|.||||+.++|++.+.
T Consensus 228 ~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~ 280 (286)
T PLN02300 228 AIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNID 280 (286)
T ss_pred EEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccch
Confidence 99999999999999999999988776555433466889999999999998754
No 77
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.62 E-value=2.3e-15 Score=98.30 Aligned_cols=96 Identities=24% Similarity=0.379 Sum_probs=73.6
Q ss_pred eeEEEEeCCHHHHHHHHHHccCCeeeccCC--CCCcceeEEecCC--cEEEEeecCCCCCCCCCCCCCCCceEEEEEeCC
Q 030972 15 NHVSLVCRNISESIDFYQNVLGFVPIRRPG--SFNFDGAWLFGHG--IGIHLLQSENPDSLPKKSVINPKDNHLSFQCES 90 (168)
Q Consensus 15 ~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~d 90 (168)
+||+|.|+|+++|++||+++||+....... .......++..++ ..++|+++....+ ... ....|++||||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~-~~~-~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDS-PLD-RGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTC-HHH-HTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCc-ccc-cCCCCEEEEEEEeCC
Confidence 699999999999999999999998765322 2334455666665 5899999877641 111 256789999999999
Q ss_pred HHHHHHHHHHcCCeEEeeeeee
Q 030972 91 VGNVEKFLKEMGIKYVRALVEE 112 (168)
Q Consensus 91 l~~~~~~l~~~g~~~~~~~~~~ 112 (168)
++++.++|+++|+++...+...
T Consensus 79 ~d~~~~~l~~~G~~~~~~~~~~ 100 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEGPRP 100 (109)
T ss_dssp HHHHHHHHHHTTECEEECEEEE
T ss_pred HHHHHHHHHHCCCEEcccCccc
Confidence 9999999999999988765433
No 78
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.60 E-value=9.6e-14 Score=91.66 Aligned_cols=118 Identities=16% Similarity=0.142 Sum_probs=84.4
Q ss_pred cceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCC--cEEEEeecCCCCCCCCCCCCCCCceEEEEEe
Q 030972 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHG--IGIHLLQSENPDSLPKKSVINPKDNHLSFQC 88 (168)
Q Consensus 11 ~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v 88 (168)
...+.|..|.|.|++++++||+++||++........+...+.+..++ ..-.+...... ........+.|.|
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~~~~~gG~l~~~~~~-------~p~~~~~~iy~~v 79 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPADGAGAGGGLMARPGS-------PPGGGGWVIYFAV 79 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEEECCCccccceeccCCcC-------CCCCCCEEEEEec
Confidence 45688999999999999999999999998776432223333332222 11111111110 1124567888899
Q ss_pred CCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeC
Q 030972 89 ESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 89 ~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
+|+++..+++.+.|.+++.++...++ ..+.+.|.||+||+|.|.+..
T Consensus 80 ~did~~l~rv~~~GG~V~~p~~~~p~-~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 80 DDIDATLERVVAAGGKVLRPKTEFPG-GGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred CChHHHHHHHHhcCCeEEecccccCC-ceEEEEEECCCCCEEEEeecC
Confidence 99999999999999999988776654 457799999999999999753
No 79
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=9.1e-14 Score=93.46 Aligned_cols=123 Identities=21% Similarity=0.333 Sum_probs=84.1
Q ss_pred cceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCC---------------------CCcceeEEecCCcEEEEeecCCCC
Q 030972 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGS---------------------FNFDGAWLFGHGIGIHLLQSENPD 69 (168)
Q Consensus 11 ~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~---------------------~~~~~~~~~~~~~~~~l~~~~~~~ 69 (168)
-..+.|..+.++|+.+++.||.+++|+........ .....+|+......+++...-...
T Consensus 20 t~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~Gte 99 (170)
T KOG2944|consen 20 TYLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWGTE 99 (170)
T ss_pred hhhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCCCCC
Confidence 34467888888888888888888888877542210 001125555555566666555444
Q ss_pred CCC-CC----CCCCCCceEEEEEeCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEee
Q 030972 70 SLP-KK----SVINPKDNHLSFQCESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 70 ~~~-~~----~~~~~~~~hl~~~v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
+.+ .. +....|++||||.|+|+..++++|+++|+++...+. .|.....+|+.||||+.|||...
T Consensus 100 s~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~--dGk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 100 SPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLK--DGKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred CCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCC--CccccceeEEECCCCCeEEEeec
Confidence 333 11 122248999999999999999999999999765443 34333459999999999999864
No 80
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.54 E-value=3.4e-13 Score=85.95 Aligned_cols=120 Identities=21% Similarity=0.246 Sum_probs=82.3
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEE--ecCCcEEEEeecCCCCCCCCC--CCCCCCceEE--EE
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWL--FGHGIGIHLLQSENPDSLPKK--SVINPKDNHL--SF 86 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~hl--~~ 86 (168)
.+-|+++.|.|++++.+||.++||++.-...+ .|+ ..-++++........++.... ....-...|+ .+
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd------~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGvVl 77 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD------TWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGVVL 77 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccc------eEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceEEE
Confidence 46799999999999999999999998665543 233 233455444433333221110 0111223455 45
Q ss_pred EeCCHHHHHHHHHHcCCeEEeeeeeeC-Ce--eEEEEEEECCCCCEEEEEeeCCC
Q 030972 87 QCESVGNVEKFLKEMGIKYVRALVEEG-GI--LVEQLFFHDPDGFMIEICDCDNL 138 (168)
Q Consensus 87 ~v~dl~~~~~~l~~~g~~~~~~~~~~~-g~--~~~~~~~~DPdG~~iel~~~~~~ 138 (168)
.++|.-++.++|+++|+.+..+|.... |. ..+++|+.||.||.+|+.+....
T Consensus 78 ~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR~~ 132 (138)
T COG3565 78 PVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFRDQ 132 (138)
T ss_pred EHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecccch
Confidence 567999999999999999888775432 32 46889999999999999988753
No 81
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.52 E-value=2.4e-13 Score=87.94 Aligned_cols=120 Identities=21% Similarity=0.265 Sum_probs=83.8
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCC---CCCCCCCCCceEEEEEeC
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSL---PKKSVINPKDNHLSFQCE 89 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~hl~~~v~ 89 (168)
..--|.|.|+|++++.+||+. |||+......+ +.....+..+..-+.|.+......- ............+++.+.
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sd-e~a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~ls~~ 80 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSD-EDAACMIISDNIFVMLLEEARFQTFTKRQIADTTKSREVLISLSAG 80 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCccc-ccceeEEEeccEEEEEeccHHhhhhcccccccccCCceEEEEeccC
Confidence 344789999999999999997 99998876542 2234444445444444433322211 112233456688899886
Q ss_pred ---CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeC
Q 030972 90 ---SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 90 ---dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
+++++.+++.+.|.+...++...+ ..+...|+|||||.||+++..
T Consensus 81 s~eevd~~v~ka~eaGGk~~~~~~d~g--fMYg~~fqDpDGh~wE~l~m~ 128 (133)
T COG3607 81 SREEVDELVDKALEAGGKPANEPQDEG--FMYGRSFQDPDGHVWEFLWMD 128 (133)
T ss_pred cHHHHHHHHHHHHHcCCCCCCCccccc--cccceeeeCCCCCeEEEEEeC
Confidence 678889999999999876665544 345589999999999999976
No 82
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.50 E-value=8.8e-13 Score=96.35 Aligned_cols=115 Identities=27% Similarity=0.345 Sum_probs=86.9
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCc-EEEEeecCCCCCCCCCCCCCCCceEEEEEeC-
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGI-GIHLLQSENPDSLPKKSVINPKDNHLSFQCE- 89 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~- 89 (168)
+.+..+.|.|+|+++...||+++||+++..+.. ..+-+..++. -+.|.+..+....+ ....|..|++|.++
T Consensus 9 ~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~----~~v~L~vgg~~LL~L~q~~~a~~~~---~~~aGLyH~AfLlP~ 81 (265)
T COG2514 9 TFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD----GSVTLGVGGTPLLTLEQFPDARRPP---PRAAGLYHTAFLLPT 81 (265)
T ss_pred cEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC----ceEEEeeCCEEEEEEEeCCCCCCCC---ccccceeeeeeecCC
Confidence 468999999999999999999999999998876 3344555554 44555544442221 23579999999998
Q ss_pred --CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeC
Q 030972 90 --SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 90 --dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
|+.++..++.+.|+.+.... .. .....+||.||+||=||++..+
T Consensus 82 r~~L~~~l~hl~~~~~~l~Ga~-DH--~vSEAlYl~DPEGNGIEiYaDr 127 (265)
T COG2514 82 REDLARVLNHLAEEGIPLVGAS-DH--LVSEALYLEDPEGNGIEIYADR 127 (265)
T ss_pred HHHHHHHHHHHHhcCCcccccC-cc--hhheeeeecCCCCCeEEEEecC
Confidence 68888899999999996321 11 1335699999999999999875
No 83
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.41 E-value=1.4e-12 Score=93.25 Aligned_cols=99 Identities=17% Similarity=0.222 Sum_probs=71.0
Q ss_pred cceeeeEEEEeC--CHHHHHHHHHHccCCeeeccCCCC----CcceeEEec--CCcEEEEeecCCCCCC--CCC---CCC
Q 030972 11 LKSVNHVSLVCR--NISESIDFYQNVLGFVPIRRPGSF----NFDGAWLFG--HGIGIHLLQSENPDSL--PKK---SVI 77 (168)
Q Consensus 11 ~~~l~hv~l~v~--D~~~a~~FY~~~LG~~~~~~~~~~----~~~~~~~~~--~~~~~~l~~~~~~~~~--~~~---~~~ 77 (168)
+++++||++.|+ |++++++||+++|||+........ ......+.. ++..+.|.++...... ... ...
T Consensus 1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~ 80 (191)
T cd07250 1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYG 80 (191)
T ss_pred CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhC
Confidence 368999999999 999999999999999987653311 112233433 3346667665542111 000 123
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHcCCeEEeee
Q 030972 78 NPKDNHLSFQCESVGNVEKFLKEMGIKYVRAL 109 (168)
Q Consensus 78 ~~~~~hl~~~v~dl~~~~~~l~~~g~~~~~~~ 109 (168)
+.|.+|+||.|+|+++++++|+++|+++...|
T Consensus 81 G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P 112 (191)
T cd07250 81 GAGVQHIALATDDIFATVAALRARGVEFLPIP 112 (191)
T ss_pred CCceeEEEEECCCHHHHHHHHHHcCCeeccCc
Confidence 57889999999999999999999999998765
No 84
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.28 E-value=2.1e-11 Score=80.59 Aligned_cols=119 Identities=25% Similarity=0.345 Sum_probs=72.7
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcc---eeEEecCCc--EEEEeecC------CCCCCCCCC-CCC--
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFD---GAWLFGHGI--GIHLLQSE------NPDSLPKKS-VIN-- 78 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~---~~~~~~~~~--~~~l~~~~------~~~~~~~~~-~~~-- 78 (168)
+++|++|.|+|++++++||+++||++........... ...+..... ........ ......... ...
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGG 81 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCc
Confidence 6899999999999999999999999998865422111 111111110 00100000 000000000 011
Q ss_pred -CCceEEEEEeCC---HHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEe
Q 030972 79 -PKDNHLSFQCES---VGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 79 -~~~~hl~~~v~d---l~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 134 (168)
.+..|+++.+++ .......+...|..+..... .. ....+||.||||+.||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~--~~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 82 DLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GR--GGVHVYFRDPDGILIELAT 138 (138)
T ss_pred hhccCceeEecccccccceEEEeeCCCCCEEEeecC-CC--cceEEEEECCCCcEEEeeC
Confidence 247899999997 66667777777888766543 21 1126999999999999974
No 85
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.27 E-value=1.7e-10 Score=89.96 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=84.8
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeecc-CCCCCcceeEEecCCcEEEEeecCCCCCCCCC--CCCCCCceEEEEEeC
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRR-PGSFNFDGAWLFGHGIGIHLLQSENPDSLPKK--SVINPKDNHLSFQCE 89 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~hl~~~v~ 89 (168)
+++|+.|.|+|++++++||++.|||+.... ....+.....+..++..+.|.......+.... ...+.+..|++|.|+
T Consensus 2 ~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~~~~~~~~G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~iaf~V~ 81 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREKASHVLRQGQINFVLTAPYSSDSPAADFAAKHGDGVKDVAFRVD 81 (353)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCceeEEEEEeCCEEEEEecCCCCCchHHHHHHhCCCceEEEEEEEC
Confidence 689999999999999999999999998875 11111122334456667777765544211111 134578899999999
Q ss_pred CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeC
Q 030972 90 SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 90 dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
|++++++++.++|+++...+...........-+..++|..+-|++..
T Consensus 82 Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~ 128 (353)
T TIGR01263 82 DAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRG 128 (353)
T ss_pred CHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCC
Confidence 99999999999999998766432101122334456677777777643
No 86
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.26 E-value=2.5e-10 Score=76.50 Aligned_cols=110 Identities=20% Similarity=0.057 Sum_probs=72.0
Q ss_pred EEEEe-CCHHHHHHHHHHccCCeeeccCCCC------------CcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceE
Q 030972 17 VSLVC-RNISESIDFYQNVLGFVPIRRPGSF------------NFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNH 83 (168)
Q Consensus 17 v~l~v-~D~~~a~~FY~~~LG~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~h 83 (168)
..|.+ .|.++|++||+++||+++....... .....-+..++..+.+...... ... ......+
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~-~~~----~~~~~~~ 77 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPG-FPF----TFGNGIS 77 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCC-CCC----CCCCCEE
Confidence 35667 9999999999999999988643210 0112333445555655543322 111 1234578
Q ss_pred EEEEeCC---HHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEE
Q 030972 84 LSFQCES---VGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEIC 133 (168)
Q Consensus 84 l~~~v~d---l~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 133 (168)
+++.++| +++++++|.+.| ++..++... .++.+..+++||+|+.|+|.
T Consensus 78 l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~-~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 78 LSVECDSEEEADRLFEALSEGG-TVLMPLQKT-FWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEEECCCHHHHHHHHHHHhcCC-eEeccchhc-CcccccEEEECCCCCEEEeC
Confidence 8999886 667889987766 666555443 34456799999999999983
No 87
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.25 E-value=6.5e-11 Score=92.27 Aligned_cols=103 Identities=13% Similarity=0.241 Sum_probs=73.1
Q ss_pred CCCccceeeeEEEEeC--CHHHHHHHHHHccCCeeeccCCC-C---CcceeEEec--CCcEEEEeecCCCCCCC--C---
Q 030972 7 NPLHLKSVNHVSLVCR--NISESIDFYQNVLGFVPIRRPGS-F---NFDGAWLFG--HGIGIHLLQSENPDSLP--K--- 73 (168)
Q Consensus 7 ~~~~~~~l~hv~l~v~--D~~~a~~FY~~~LG~~~~~~~~~-~---~~~~~~~~~--~~~~~~l~~~~~~~~~~--~--- 73 (168)
+.+.+.+++||++.|. |++++++||+++|||+......- . ......+.. +...++|.++....... .
T Consensus 152 ~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~fl 231 (353)
T TIGR01263 152 PGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEFL 231 (353)
T ss_pred CCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHHH
Confidence 4567899999999999 99999999999999998764321 1 111122332 34567776643221111 1
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHcCCeEEeee
Q 030972 74 KSVINPKDNHLSFQCESVGNVEKFLKEMGIKYVRAL 109 (168)
Q Consensus 74 ~~~~~~~~~hl~~~v~dl~~~~~~l~~~g~~~~~~~ 109 (168)
....+.|.+||||.|+|+++++++|+++|+++...|
T Consensus 232 ~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 232 EFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred HHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 112357899999999999999999999999988765
No 88
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=1.6e-10 Score=82.98 Aligned_cols=115 Identities=18% Similarity=0.199 Sum_probs=80.4
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCC-------------CCcceeEEecCCcEEEEeecCCCCCCCCCCCCC
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGS-------------FNFDGAWLFGHGIGIHLLQSENPDSLPKKSVIN 78 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 78 (168)
.+.-|+++.|.|.+++++||+++|||++....+. ..+...++..+.-..|++..-..+-....+..+
T Consensus 16 ~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~YelG 95 (299)
T KOG2943|consen 16 RRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYELG 95 (299)
T ss_pred hheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceecc
Confidence 3556999999999999999999999999764321 112234455554444444433333333344667
Q ss_pred CCceEEEEEeCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEee
Q 030972 79 PKDNHLSFQCESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 79 ~~~~hl~~~v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
+++.|+.+.++|+-...+.++..|.+- .|.+. +++.||||+.|+|.+.
T Consensus 96 ndfg~i~I~s~dv~~~ve~v~~p~~~~-------~g~~~--~~v~dPdGykF~l~~~ 143 (299)
T KOG2943|consen 96 NDFGGITIASDDVFSKVEKVNAPGGKG-------SGCGI--AFVKDPDGYKFYLIDR 143 (299)
T ss_pred CCcccEEEeHHHHHHHHHHhcCcCCcc-------cceEE--EEEECCCCcEEEEecc
Confidence 899999999999888888887765522 23333 8899999999999983
No 89
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=99.19 E-value=2.3e-10 Score=87.09 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=71.7
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeC---
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCE--- 89 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~--- 89 (168)
+.-||+|.|+|++++.+||+++|++.. ...+ ....+ +...+.+.....+ ........+|+.++
T Consensus 247 ~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde----~a~cm--~dtI~vMllt~~D-------~~~~~evLl~Ls~~Sre 312 (357)
T PRK01037 247 KTFSVVLEVQDLRRAKKFYSKMFGLEC-WDGD----KLFLL--GKTSLYLQQTKAE-------KKNRGTTTLSLELECEH 312 (357)
T ss_pred ceEEEEeeeCCHHHHHHHHHHHhCCCC-CCCC----ccccc--cCcEEEEEecCCC-------CCCcceEEEEeccCCHH
Confidence 445999999999999999999988885 3222 11212 3333333332221 22345678899987
Q ss_pred CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEee
Q 030972 90 SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 90 dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
+++++.+++.++|.+....+... |. .-.|.|||||.||+++.
T Consensus 313 ~VD~lv~~A~aaGG~~~~~~~D~-Gf---~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 313 DFVRFLRRWEMLGGELGEQADGH-FP---LRLVFDLDGHIWVVSCV 354 (357)
T ss_pred HHHHHHHHHHHcCCCCCCCcccc-cC---cceeECCCCCEEEEEEE
Confidence 57788999999998664443333 43 47899999999999975
No 90
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=9.1e-10 Score=79.15 Aligned_cols=117 Identities=16% Similarity=0.237 Sum_probs=80.0
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCC--cEEEEeecCCCCCCCCCCCCCCCceEEEEE--e
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHG--IGIHLLQSENPDSLPKKSVINPKDNHLSFQ--C 88 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~--v 88 (168)
.+..|.|.|.|++++++||+++|||++..... .+..+.+..+. ..++|......... ..++..++|. .
T Consensus 149 pv~~V~l~VgdL~ks~kyw~~~lgM~ilekee--k~t~~~mgYgd~q~~LElt~~~~~id~------~kg~griafaip~ 220 (299)
T KOG2943|consen 149 PVLQVMLNVGDLQKSIKYWEKLLGMKILEKEE--KYTRARMGYGDEQCVLELTYNYDVIDR------AKGFGRIAFAIPT 220 (299)
T ss_pred CeEEEEEEehhHHHHHHHHHHHhCcchhhhhh--hhhhhhhccCCcceEEEEEeccCcccc------cccceeEEEeccc
Confidence 46789999999999999999999999987432 12333344443 35555544433111 2245555555 4
Q ss_pred CCHHHHHHHHHHcCCeEEeeeeeeC---CeeEEEEEEECCCCCEEEEEeeCC
Q 030972 89 ESVGNVEKFLKEMGIKYVRALVEEG---GILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 89 ~dl~~~~~~l~~~g~~~~~~~~~~~---g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
+++..+.+.++..+-++..+..... +.....+.+.||||+.|+|+..+.
T Consensus 221 d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~ 272 (299)
T KOG2943|consen 221 DDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEG 272 (299)
T ss_pred cccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccHH
Confidence 6888888999988777665543322 235667889999999999998764
No 91
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.03 E-value=1e-09 Score=85.95 Aligned_cols=100 Identities=12% Similarity=0.176 Sum_probs=72.3
Q ss_pred ccceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCC-------CcceeEEecC--CcEEEEeecCCC---CCCCCC---
Q 030972 10 HLKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSF-------NFDGAWLFGH--GIGIHLLQSENP---DSLPKK--- 74 (168)
Q Consensus 10 ~~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~-------~~~~~~~~~~--~~~~~l~~~~~~---~~~~~~--- 74 (168)
.+.+|+||++.|.+++.++.||+++|||+..+..... ......+... ...+.|.++... .+....
T Consensus 177 gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~~~SqI~eFL~ 256 (398)
T PLN02875 177 GLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTKRKSQIQTYLE 256 (398)
T ss_pred CcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCCCcChHHHHHH
Confidence 4679999999999999999999999999887543211 1123334333 246777776431 111111
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHc----CCeEEeee
Q 030972 75 SVINPKDNHLSFQCESVGNVEKFLKEM----GIKYVRAL 109 (168)
Q Consensus 75 ~~~~~~~~hl~~~v~dl~~~~~~l~~~----g~~~~~~~ 109 (168)
...+.|++||||.++|+.++.++|+++ |+++...|
T Consensus 257 ~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 257 HNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred hcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 134589999999999999999999999 99998855
No 92
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.96 E-value=5.3e-08 Score=65.48 Aligned_cols=117 Identities=20% Similarity=0.066 Sum_probs=77.0
Q ss_pred EEEEeC-CHHHHHHHHHHccCCeeeccCCCCC------------cceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceE
Q 030972 17 VSLVCR-NISESIDFYQNVLGFVPIRRPGSFN------------FDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNH 83 (168)
Q Consensus 17 v~l~v~-D~~~a~~FY~~~LG~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~h 83 (168)
-.|..+ |-++|++||+++||.+...+....+ .-.+-+..++..+.+........ .....+--..
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~~---~~~~~~~s~~ 80 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDMG---ATEGGGTSLS 80 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCccC---cccCCCeeEE
Confidence 356778 9999999999999999887533222 11222334444444433322211 1011223356
Q ss_pred EEEEeCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 84 LSFQCESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 84 l~~~v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
|-+.++|++++++++.+.|+++..+..... ++.+...+.||.|+.|-|.....
T Consensus 81 l~~~~~d~da~f~~a~~aGa~v~mpl~~~f-wG~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 81 LDLYVEDVDAVFERAAAAGATVVMPLEDTF-WGDRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEEehHHHHHHHHHHhcCCeEEecchhcC-cccceEEEECCCCCEEEEecCcc
Confidence 666777899999999999988887765543 33456899999999999987643
No 93
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.90 E-value=1.1e-08 Score=76.38 Aligned_cols=131 Identities=17% Similarity=0.170 Sum_probs=85.1
Q ss_pred cCCCCCccceeeeEEEEeCCHHHHHHHHHHccCCeeeccC----CCCCcceeEEecCCcEEEEeecCCCCCCC-CCC--C
Q 030972 4 SAGNPLHLKSVNHVSLVCRNISESIDFYQNVLGFVPIRRP----GSFNFDGAWLFGHGIGIHLLQSENPDSLP-KKS--V 76 (168)
Q Consensus 4 ~~~~~~~~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~--~ 76 (168)
..|.+-++.+++||.|.|.|.+.++.||+..|||++-... +........+..+.....+.....+.... +.. .
T Consensus 8 ~k~~~g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~ 87 (381)
T KOG0638|consen 8 AKPEAGKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVK 87 (381)
T ss_pred CCccccceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhh
Confidence 3444556789999999999999999999999999987633 21122222234444444454444443211 111 3
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHcCCeEEeeeeeeC-C-eeEEEEEEECCCCCEEEEEe
Q 030972 77 INPKDNHLSFQCESVGNVEKFLKEMGIKYVRALVEEG-G-ILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 77 ~~~~~~hl~~~v~dl~~~~~~l~~~g~~~~~~~~~~~-g-~~~~~~~~~DPdG~~iel~~ 134 (168)
++.+..-+||+|+|++.+.+.+.++|+++..+|.... . ...+.+.+..+.-...-+++
T Consensus 88 HgdgvkdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvE 147 (381)
T KOG0638|consen 88 HGDGVKDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVE 147 (381)
T ss_pred cccchhceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhh
Confidence 4567889999999999999999999999988875432 1 12344556555433333333
No 94
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.79 E-value=7.2e-08 Score=70.89 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=68.5
Q ss_pred cceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCC-CCCCCCCCCCceEEEEEeC
Q 030972 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDS-LPKKSVINPKDNHLSFQCE 89 (168)
Q Consensus 11 ~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~hl~~~v~ 89 (168)
-+.|+||.|.|.|++++.+||+++|||+...+.. ...|+..++..-++........ .........|...+.+.+.
T Consensus 166 ~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~----~A~F~a~G~YHHHia~N~W~s~~~~~~~~~~~GLa~~~i~~~ 241 (265)
T COG2514 166 GTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP----SALFLASGDYHHHLAANTWNSRGARPRNANASGLAWLEIHTP 241 (265)
T ss_pred CcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC----cceEEecCCcceeEEEeccccCCCCCCCCCCCCcceEEEEcC
Confidence 4679999999999999999999999999988733 5678888876666655444332 2222245568888888887
Q ss_pred CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEE
Q 030972 90 SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEIC 133 (168)
Q Consensus 90 dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 133 (168)
+-+.+...... ..||.|+.|.++
T Consensus 242 ~~~~l~~~~~~---------------------~~Dp~G~~i~~~ 264 (265)
T COG2514 242 DPEKLDATGTR---------------------LTDPWGIVIRVV 264 (265)
T ss_pred Ccccccccccc---------------------eecCCCceEEEe
Confidence 63322111110 178999998875
No 95
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.72 E-value=1.4e-06 Score=56.54 Aligned_cols=113 Identities=22% Similarity=0.161 Sum_probs=63.3
Q ss_pred eeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCc--EEEEeecCCCCCCCCCCCCCCCceEEEEEeCCHH
Q 030972 15 NHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGI--GIHLLQSENPDSLPKKSVINPKDNHLSFQCESVG 92 (168)
Q Consensus 15 ~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~dl~ 92 (168)
.+-+|.|.|-+..++||++.|||+...+.. ..+++..... .+.|-+.+...+. .-...-...++.+.|++..
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn----a~a~lg~~~~~erlvlEESP~~rtr--~V~G~KKl~~ivIkv~~~~ 75 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN----ALAILGDQQKEERLVLEESPSMRTR--AVEGPKKLNRIVIKVPNPK 75 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET----TEEEEE-TT--EEEEEEE--TTT-B----SSS-SEEEEEEEESSHH
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc----cEEEecCCCCceEEEEecCCccccc--cccCcceeeEEEEEcCCHH
Confidence 356899999999999999999999998765 4555655433 3444444433211 1122335789999999866
Q ss_pred HHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 93 NVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 93 ~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
++.+ |.++|.++...-. |..++.|-..+|+|..|.|...++
T Consensus 76 EIe~-LLar~~~~~~l~k---g~~gyAfe~vSPEgd~~llhaEdd 116 (125)
T PF14506_consen 76 EIEA-LLARGAQYDRLYK---GKNGYAFEAVSPEGDRFLLHAEDD 116 (125)
T ss_dssp HHHH-HHHC-S--SEEEE----SSSEEEEEE-TT--EEEEE--S-
T ss_pred HHHH-HHhcccccceeEE---cCCceEEEEECCCCCEEEEEEcCC
Confidence 6544 4445555422212 333367888899999999988654
No 96
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.66 E-value=5.3e-07 Score=63.58 Aligned_cols=124 Identities=13% Similarity=0.206 Sum_probs=64.5
Q ss_pred eeeEEEEeCCHHHHHHHHHHccCCeeeccCC--CCCcceeEEecCCcEEEEeecCCCCCCCCCC--------CCCCCceE
Q 030972 14 VNHVSLVCRNISESIDFYQNVLGFVPIRRPG--SFNFDGAWLFGHGIGIHLLQSENPDSLPKKS--------VINPKDNH 83 (168)
Q Consensus 14 l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~h 83 (168)
|+|+.+.|+|++++.++|++.|||.+..... ..+.....+..++..++|+........+... ....|..+
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGYLELIAIDPEAPAPDRGRWFGLDRLAGGEGLYG 80 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSEEEEEEES-HHHSTGGGT-TTTHHHHT--EEEE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCceEEEEEeCCcccccccccceechhhcCCCCeEE
Confidence 6899999999999999997789999886422 2222333444455599999863322221110 13568889
Q ss_pred EEEEeCCHHHHHHHHHHcCCeEEeeeeeeCCe-eEEEEEEECC----CCCEEEEEeeCC
Q 030972 84 LSFQCESVGNVEKFLKEMGIKYVRALVEEGGI-LVEQLFFHDP----DGFMIEICDCDN 137 (168)
Q Consensus 84 l~~~v~dl~~~~~~l~~~g~~~~~~~~~~~g~-~~~~~~~~DP----dG~~iel~~~~~ 137 (168)
+|+.++|+++..++|++.|+.........++. ....+++.++ .+..-.+++...
T Consensus 81 ~~l~t~d~~~~~~~l~~~G~~~~~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~ 139 (175)
T PF13468_consen 81 WALRTDDIEAVAARLRAAGLDAGSRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWET 139 (175)
T ss_dssp EEEE-S-HHHHHHHHHTTT-EEEEEEEEEE-EEEEEEEEEE-SS---SS---EEEEESS
T ss_pred EEEecCCHHHHHHHHHhcCCCCCCcCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCC
Confidence 99999999999999999998732222222222 2344566664 256667775544
No 97
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.59 E-value=4.4e-07 Score=61.32 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=80.2
Q ss_pred CCCccceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCC--CCCCCCceEE
Q 030972 7 NPLHLKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKK--SVINPKDNHL 84 (168)
Q Consensus 7 ~~~~~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~hl 84 (168)
+|+.+.++.+|.+.++|.+++..+++ .|||+...+.... ....+..+...+.|-.. +++.... ..++.+..-+
T Consensus 3 nP~g~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk--~v~l~rQG~I~~vln~e--p~s~a~~~~~~HG~sv~ai 77 (139)
T PF14696_consen 3 NPLGLDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSK--DVTLYRQGDINFVLNSE--PDSFAAEFAAQHGPSVCAI 77 (139)
T ss_dssp -TT-EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCC--SEEEEEETTEEEEEEEE--STSCHHHHHHHHSSEEEEE
T ss_pred CCCCCCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCc--ceEEEEeCCEEEEEeCC--CcchHHHHHHhcCCEEEEE
Confidence 46788999999999999877888886 5999998764321 33444556556555442 2221111 1346788999
Q ss_pred EEEeCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeC
Q 030972 85 SFQCESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 85 ~~~v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
+|.|+|.+.+++++.++|.+....+..... ...--++-++|-++-|++..
T Consensus 78 afrV~Da~~A~~rA~~~GA~~~~~~~~~~e--~~~paI~g~G~sl~yfVdr~ 127 (139)
T PF14696_consen 78 AFRVDDAAAAYERAVALGAEPVQEPTGPGE--LNIPAIRGIGGSLHYFVDRY 127 (139)
T ss_dssp EEEES-HHHHHHHHHHTT--EEEEEEETT---BEEEEEE-CCC-EEEEEE--
T ss_pred EEEeCCHHHHHHHHHHcCCcCcccCCCCCc--EeeeeEEccCCCEEEEEecC
Confidence 999999999999999999998877643322 23466788999999999864
No 98
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.56 E-value=2.1e-06 Score=67.60 Aligned_cols=123 Identities=11% Similarity=0.103 Sum_probs=85.1
Q ss_pred eeeEEEEeCCHHHHHHHHHHccCCeeeccCCC----CCcceeEEecCCcEEEEeecCCCC--C----------CC---C-
Q 030972 14 VNHVSLVCRNISESIDFYQNVLGFVPIRRPGS----FNFDGAWLFGHGIGIHLLQSENPD--S----------LP---K- 73 (168)
Q Consensus 14 l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~--~----------~~---~- 73 (168)
++||.++|.|.+++..||+..|||+....... .......+..+...+.+.....+. . .+ .
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSD 80 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcH
Confidence 58999999999999999999999998764431 112234455555566555553221 0 00 0
Q ss_pred --C---CCCCCCceEEEEEeCCHHHHHHHHHHcCCeEEeeeeeeC----CeeEEEEEEECCCCCEEEEEeeC
Q 030972 74 --K---SVINPKDNHLSFQCESVGNVEKFLKEMGIKYVRALVEEG----GILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 74 --~---~~~~~~~~hl~~~v~dl~~~~~~l~~~g~~~~~~~~~~~----g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
. ..++.+..-++|.|+|++.+++++.++|++....+.... +......-+.-++|..+-|++..
T Consensus 81 ~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~ 152 (398)
T PLN02875 81 AARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYK 152 (398)
T ss_pred HHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccC
Confidence 0 034578889999999999999999999999887765421 11234455677888888888754
No 99
>PRK10148 hypothetical protein; Provisional
Probab=98.52 E-value=1.3e-05 Score=54.96 Aligned_cols=113 Identities=17% Similarity=0.011 Sum_probs=69.3
Q ss_pred EEEEeC-CHHHHHHHHHHccCCeeeccCC--C--------------------CCcceeEEecCCcEEEEeecCCCCCCCC
Q 030972 17 VSLVCR-NISESIDFYQNVLGFVPIRRPG--S--------------------FNFDGAWLFGHGIGIHLLQSENPDSLPK 73 (168)
Q Consensus 17 v~l~v~-D~~~a~~FY~~~LG~~~~~~~~--~--------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (168)
..|..+ |-++|++||+++||.++..... + ...-.+-+..++..+.+...... .
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~~-~--- 80 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPS-G--- 80 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCCC-c---
Confidence 455664 8999999999999988754310 0 00112233444444444332111 1
Q ss_pred CCCCCCCceEEEEEeCCHHH---HHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 74 KSVINPKDNHLSFQCESVGN---VEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 74 ~~~~~~~~~hl~~~v~dl~~---~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
.......++++.++|.++ +++.| +.|.++..++.... ++.+...+.||.|+.|.|...+.
T Consensus 81 --~~~~~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~-wg~~~g~v~D~fGi~W~l~~~~~ 143 (147)
T PRK10148 81 --KAHYSGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETF-WAHGFGKVTDKFGVPWMINVVKQ 143 (147)
T ss_pred --CCCCCeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcc-hhhccEEEECCCCCEEEEEecCC
Confidence 111135678888888776 55655 47888876655433 33456899999999999998654
No 100
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.40 E-value=3.5e-07 Score=69.59 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=70.8
Q ss_pred CCccceeeeEEEEe--CCHHHHHHHHHHccCCeeeccCC-CCCccee----EE-ecCCcEEEEeecCCCCCCCCC---CC
Q 030972 8 PLHLKSVNHVSLVC--RNISESIDFYQNVLGFVPIRRPG-SFNFDGA----WL-FGHGIGIHLLQSENPDSLPKK---SV 76 (168)
Q Consensus 8 ~~~~~~l~hv~l~v--~D~~~a~~FY~~~LG~~~~~~~~-~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~---~~ 76 (168)
...+..|+|+++.| ..++.+..||+++|||+.....+ ......+ .. .++..++-|-...+..+.... ..
T Consensus 162 ~~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y 241 (363)
T COG3185 162 GVGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREY 241 (363)
T ss_pred ccCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHh
Confidence 34567899998876 69999999999999999877433 1111111 11 123345555444443321111 13
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHcCCeEEeeee
Q 030972 77 INPKDNHLSFQCESVGNVEKFLKEMGIKYVRALV 110 (168)
Q Consensus 77 ~~~~~~hl~~~v~dl~~~~~~l~~~g~~~~~~~~ 110 (168)
.+.|++||+|.++|+-++.++|++.|+++...|.
T Consensus 242 ~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~ 275 (363)
T COG3185 242 RGEGIQHIAFGTDDIYATVAALRERGVKFLPIPE 275 (363)
T ss_pred CCCcceEEEecccHHHHHHHHHHHcCCccCCCch
Confidence 5679999999999999999999999999987653
No 101
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.60 E-value=0.0017 Score=49.98 Aligned_cols=116 Identities=19% Similarity=0.315 Sum_probs=74.8
Q ss_pred CCCCccceeeeEEEEeCCH-HHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCC--CCCCCCce
Q 030972 6 GNPLHLKSVNHVSLVCRNI-SESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKK--SVINPKDN 82 (168)
Q Consensus 6 ~~~~~~~~l~hv~l~v~D~-~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~ 82 (168)
+.|+...++.+|.|.|+|. ++...++.. |||....+... ..+.+...+ .+.++....+.+-... ..++++..
T Consensus 15 ~~P~~~~GfeFvEf~~~d~~~~l~~l~~~-lGF~~~~~Hrs---k~v~l~rQG-dinlvvn~~~~s~a~~f~~~Hgps~~ 89 (363)
T COG3185 15 ANPEGTDGFEFVEFAVPDPQEALGALLGQ-LGFTAVAKHRS---KAVTLYRQG-DINLVVNAEPDSFAAEFLDKHGPSAC 89 (363)
T ss_pred cCCCCCCceeEEEEecCCHHHHHHHHHHH-hCccccccccc---cceeEEEeC-CEEEEEcCCCcchhhHHHHhcCCchh
Confidence 4556688999999999999 555556665 99998775432 123332222 3444444444331111 14567889
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeEEeeeeee--------CCeeEEEEEEECCC
Q 030972 83 HLSFQCESVGNVEKFLKEMGIKYVRALVEE--------GGILVEQLFFHDPD 126 (168)
Q Consensus 83 hl~~~v~dl~~~~~~l~~~g~~~~~~~~~~--------~g~~~~~~~~~DPd 126 (168)
.++|.|+|.+.++++.+++|.+....+... .|.+...+||.|..
T Consensus 90 a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~ 141 (363)
T COG3185 90 AMAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRY 141 (363)
T ss_pred eeEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccC
Confidence 999999999999999999999655543310 12234557777777
No 102
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00022 Score=53.95 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=84.0
Q ss_pred CccceeeeEEEEeC--CHHHHHHHHHHccCCeeeccCCCCCcce-------eEEecCCcEEEEeecCCCCCCCC------
Q 030972 9 LHLKSVNHVSLVCR--NISESIDFYQNVLGFVPIRRPGSFNFDG-------AWLFGHGIGIHLLQSENPDSLPK------ 73 (168)
Q Consensus 9 ~~~~~l~hv~l~v~--D~~~a~~FY~~~LG~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~------ 73 (168)
+.+.+++|++..++ .++.+.+||.+.|||..-+..++..... +.+......+.+-..........
T Consensus 174 ~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~esi~mpinEp~~G~k~ksQIqe 253 (381)
T KOG0638|consen 174 GGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYEESIKMPINEPAPGKKKKSQIQE 253 (381)
T ss_pred cceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCCccEEEeccCCCCCCccHHHHHH
Confidence 66789999999999 7899999999999998776544222111 11111122222222111111111
Q ss_pred --CCCCCCCceEEEEEeCCHHHHHHHHHHcCCeEEeeeeeeCCe--------------------eEEEEEEECCCCCEEE
Q 030972 74 --KSVINPKDNHLSFQCESVGNVEKFLKEMGIKYVRALVEEGGI--------------------LVEQLFFHDPDGFMIE 131 (168)
Q Consensus 74 --~~~~~~~~~hl~~~v~dl~~~~~~l~~~g~~~~~~~~~~~g~--------------------~~~~~~~~DPdG~~ie 131 (168)
.+..++|.+|+++.++|+-.+.+.++++|.++...|...... .-....-.|..|+++.
T Consensus 254 yv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~De~gyLLQ 333 (381)
T KOG0638|consen 254 YVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDFDENGYLLQ 333 (381)
T ss_pred HHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEecCCCcEEee
Confidence 125678999999999999999999999999998765321100 0011333578899999
Q ss_pred EEeeCCCCC
Q 030972 132 ICDCDNLPV 140 (168)
Q Consensus 132 l~~~~~~~~ 140 (168)
|......++
T Consensus 334 IFTKplqdr 342 (381)
T KOG0638|consen 334 IFTKPLQDR 342 (381)
T ss_pred eeccccCCC
Confidence 998654333
No 103
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=97.30 E-value=0.0079 Score=39.50 Aligned_cols=99 Identities=18% Similarity=0.096 Sum_probs=56.3
Q ss_pred eEEEEeCCHHHHHHHHHHccCCeeec---cCCCC------CcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEE
Q 030972 16 HVSLVCRNISESIDFYQNVLGFVPIR---RPGSF------NFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSF 86 (168)
Q Consensus 16 hv~l~v~D~~~a~~FY~~~LG~~~~~---~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~ 86 (168)
|+.|. .+-++|.+||.++||-.... ..+.. ....+-+..++..+........ ...+....|++
T Consensus 6 yL~F~-g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm~~D~~~~-------~~~~~~~sl~i 77 (116)
T PF06983_consen 6 YLWFN-GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLMASDGGPD-------FPFGNNISLCI 77 (116)
T ss_dssp EEEES-S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEEEEEESTS-----------TTEEEEE
T ss_pred EEEeC-CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEEEECCCCC-------CCCCCcEEEEE
Confidence 44443 78999999999999943322 11100 1112334455666655554411 11234588888
Q ss_pred EeCCHH---HHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEE
Q 030972 87 QCESVG---NVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEIC 133 (168)
Q Consensus 87 ~v~dl~---~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 133 (168)
.++|.+ +++++|.+.|- +. . ....+.|..|..|.|+
T Consensus 78 ~~~~~ee~~~~f~~Ls~gG~---------~~-~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 78 ECDDEEEIDRIFDKLSEGGQ---------WF-S-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp EESSHHHHHHHHHHHHTTTE---------TC-C-EEEEEE-TTS-EEEEE
T ss_pred EcCCHHHHHHHHHHHHcCCC---------cc-c-eeEEEEeCCCCEEEeC
Confidence 888654 55677776665 21 2 4588999999999985
No 104
>PF15067 FAM124: FAM124 family
Probab=97.07 E-value=0.014 Score=42.47 Aligned_cols=103 Identities=20% Similarity=0.303 Sum_probs=61.0
Q ss_pred eeeeEEEEeC--CHHHHHHHHHHccCCeeeccCCCCCcceeEEecC--CcEEEEeecCCCCCCCCCCCCCCCceEEEEEe
Q 030972 13 SVNHVSLVCR--NISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGH--GIGIHLLQSENPDSLPKKSVINPKDNHLSFQC 88 (168)
Q Consensus 13 ~l~hv~l~v~--D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v 88 (168)
.+-.++++|+ |.+.+++||+-+|+-++.....+. -.|.... +..+.+.-..-+.... .......-+.|.|
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~~F---C~F~lys~~~~~iQlsLK~lp~~~~---p~p~esavLqF~V 201 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQKEDF---CFFTLYSQPGLDIQLSLKQLPPGMS---PEPTESAVLQFRV 201 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceeeCCc---EEEEEecCCCeEEEEEeccCCCCCC---cccccceEEEEEe
Confidence 4456788888 999999999999999987665422 2222222 3334443322221111 1122457899999
Q ss_pred CCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEE
Q 030972 89 ESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIE 131 (168)
Q Consensus 89 ~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 131 (168)
.|+-++.-.|=.-=.++ +.+. .-.+|||||.|=
T Consensus 202 ~~igqLvpLLPnpc~PI--------S~~r--WqT~D~DGNkIL 234 (236)
T PF15067_consen 202 EDIGQLVPLLPNPCSPI--------SETR--WQTEDYDGNKIL 234 (236)
T ss_pred cchhhhcccCCCCcccc--------cCCc--ceeeCCCCCEec
Confidence 99888765432211111 1112 557899999973
No 105
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=96.70 E-value=0.011 Score=38.09 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=41.7
Q ss_pred eEEEEEeCCHHHHHHHHHH-cCCeEEeeeeeeCCeeEEEEEEECCCC-CEEEEEeeCC
Q 030972 82 NHLSFQCESVGNVEKFLKE-MGIKYVRALVEEGGILVEQLFFHDPDG-FMIEICDCDN 137 (168)
Q Consensus 82 ~hl~~~v~dl~~~~~~l~~-~g~~~~~~~~~~~g~~~~~~~~~DPdG-~~iel~~~~~ 137 (168)
.|++|.|+|++++.+.+.+ .|+......... +......++..++| ..|||+++..
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~-~~~v~~~~~~~~~~~~~iELi~p~~ 57 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDE-PQGVRVAFLYLGDGPVQIELIQPLD 57 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEG-CTTEEEEEEEETTETEEEEEEEESS
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecC-CCCEEEEEEEeCCCcEEEEEEEeCC
Confidence 5999999999999999998 798865443322 23445678888888 6899999765
No 106
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=96.11 E-value=0.022 Score=36.24 Aligned_cols=91 Identities=18% Similarity=0.262 Sum_probs=41.8
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeC---
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCE--- 89 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~--- 89 (168)
.+..+.|.|+| +++.+||+++||-.. ...+.+.+..+++-... +...-+.-.+-|.|+
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~~~~-----------------~~~l~f~ea~G~DL~~~-~~~twDLe~Lkf~V~~~~ 65 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFGGQL-----------------PFFLTFQEAQGPDLTIE-NNETWDLEMLKFQVPKDF 65 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---HHH-----------------TTTEEEEE---CCGSS--TTSBSSEEEEEEEES-S-
T ss_pred EEEEEEEeCCC-hhHHHHHHhccccCC-----------------CceEEEeeccCCccccC-CCcEEeeEEEEEEecCcc
Confidence 35678999999 889999999887221 12344444443321111 122346678888887
Q ss_pred CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEE
Q 030972 90 SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMI 130 (168)
Q Consensus 90 dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~i 130 (168)
|+.++.+++.+.++ ++ +. ....+-+.||.|+.|
T Consensus 66 Dl~~L~~~le~~~~-fi-dK------k~k~l~~~Dps~IEl 98 (101)
T PF14507_consen 66 DLAALKSHLEEQEF-FI-DK------KEKFLVTSDPSQIEL 98 (101)
T ss_dssp -HHHHHHHTTTS-E-E---T------T-SEEEEE-TTS-EE
T ss_pred cHHHHHHHhcccce-Ee-cC------CceEEEEECCcceEE
Confidence 78888888887332 21 11 113477889998765
No 107
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=95.34 E-value=0.035 Score=38.98 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=31.6
Q ss_pred ceEEEEEeCCHHHHHHHH-HHcCCeEEeeeeeeC-CeeEEEEEEECCCCCEEEEEeeC
Q 030972 81 DNHLSFQCESVGNVEKFL-KEMGIKYVRALVEEG-GILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 81 ~~hl~~~v~dl~~~~~~l-~~~g~~~~~~~~~~~-g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
+.|+.+.|+|++++.+++ +..|+.+..+..... |.....++| ++| .|||+..+
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f--~~~-YlEli~i~ 55 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPF--GDG-YLELIAID 55 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE---SSS-EEEEEEES
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEee--CCc-eEEEEEeC
Confidence 369999999999999999 778999987766554 555555555 667 99999964
No 108
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=95.26 E-value=0.12 Score=35.61 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=37.6
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCc-ceeEEe-cCCcEEEEee
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNF-DGAWLF-GHGIGIHLLQ 64 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~-~~~~~~-~~~~~~~l~~ 64 (168)
++++||+|.|+|+.++..-+++ +|.+...+..+... ..+|+. .++.++++..
T Consensus 114 rGfgHIci~V~di~sac~~lke-kGV~f~Kk~~dGk~K~iaF~~dpDgywiei~~ 167 (170)
T KOG2944|consen 114 RGFGHICIEVDDINSACERLKE-KGVRFKKKLKDGKMKPIAFLHDPDGYWIEIEL 167 (170)
T ss_pred CccceEEEEeCCHHHHHHHHHH-hCceeeecCCCccccceeEEECCCCCeEEEee
Confidence 5799999999999999999998 99997776554444 333433 3344666543
No 109
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=94.45 E-value=0.42 Score=31.81 Aligned_cols=58 Identities=19% Similarity=0.359 Sum_probs=40.1
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeEEeeeeee----------CCeeEEEEEEECCCC-CEEEEEeeCC
Q 030972 80 KDNHLSFQCESVGNVEKFLKEMGIKYVRALVEE----------GGILVEQLFFHDPDG-FMIEICDCDN 137 (168)
Q Consensus 80 ~~~hl~~~v~dl~~~~~~l~~~g~~~~~~~~~~----------~g~~~~~~~~~DPdG-~~iel~~~~~ 137 (168)
++.|+++.|.|+++..+..++.|.++....... .+......++..|+| ..+||++...
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~ 71 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFLELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHH 71 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHHHcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecC
Confidence 578999999999999999888898775432111 111234456666665 5799998654
No 110
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=94.38 E-value=0.45 Score=30.55 Aligned_cols=58 Identities=17% Similarity=0.367 Sum_probs=40.1
Q ss_pred CceEEEEEeCCHHHHHHHHHH-cCCeEEeeeeeeCCeeEEEEEEECC---CCCEEEEEeeCC
Q 030972 80 KDNHLSFQCESVGNVEKFLKE-MGIKYVRALVEEGGILVEQLFFHDP---DGFMIEICDCDN 137 (168)
Q Consensus 80 ~~~hl~~~v~dl~~~~~~l~~-~g~~~~~~~~~~~g~~~~~~~~~DP---dG~~iel~~~~~ 137 (168)
++.|+++.|+|+++..+..++ .|.+.........+...+.+++.+. .|..++|.....
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 62 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPD 62 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCC
Confidence 468999999999999999987 5998765432222112234666554 677899987644
No 111
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=93.86 E-value=1 Score=28.76 Aligned_cols=57 Identities=19% Similarity=0.322 Sum_probs=39.6
Q ss_pred CceEEEEEeCCHHHHHHHHHH-cCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 80 KDNHLSFQCESVGNVEKFLKE-MGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 80 ~~~hl~~~v~dl~~~~~~l~~-~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
++.|+++.|.|++++.+..++ .|+.+........+ ..+.+.+..+++..+++.....
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~i~l~~~~~ 60 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPER-GSYKLDLLLNGGYQLELFSFPN 60 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCC-CcEEEEEecCCCcEEEEEEcCC
Confidence 679999999999999999986 69988654322221 1223445556778888876543
No 112
>PLN02367 lactoylglutathione lyase
Probab=93.55 E-value=0.44 Score=35.20 Aligned_cols=56 Identities=13% Similarity=0.325 Sum_probs=39.9
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCc-ceeEE-ecCCcEEEEeecCCC
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNF-DGAWL-FGHGIGIHLLQSENP 68 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~-~~~~~-~~~~~~~~l~~~~~~ 68 (168)
.+++|++|.|+|++++.+-.++ .|.++......... ..+|+ ..+|..++|++...-
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a-~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~~~ 225 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEE-LGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLKTI 225 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHH-CCCEEEeCCccCCceEEEEEECCCCCEEEEEecccc
Confidence 4799999999999999999997 99998764432221 12333 345678888876543
No 113
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=92.76 E-value=0.72 Score=28.14 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeC
Q 030972 90 SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 90 dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
+.+++.+.+++.|+.+..-.....| .|.+...|.+|+.+|+.-..
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g--~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDG--CYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCC--EEEEEEEECCCCEEEEEEcC
Confidence 7899999999999977655443333 36799999999999998653
No 114
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=92.51 E-value=1.5 Score=30.25 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=40.9
Q ss_pred CceEEEEEeCCHHHHHHHHHH-cCCeEEeeee---ee------------C--CeeEEEEEEECCCCCEEEEEeeCC
Q 030972 80 KDNHLSFQCESVGNVEKFLKE-MGIKYVRALV---EE------------G--GILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 80 ~~~hl~~~v~dl~~~~~~l~~-~g~~~~~~~~---~~------------~--g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
++.|+++.|.|+++..+..++ .|.++...+. .. . +.....+++..++|..|||.+...
T Consensus 4 ~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~ 79 (162)
T TIGR03645 4 TFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKN 79 (162)
T ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccC
Confidence 679999999999999999977 5987753210 00 0 012344666667788899999865
No 115
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=91.86 E-value=0.97 Score=29.08 Aligned_cols=31 Identities=10% Similarity=0.290 Sum_probs=26.5
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccC
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRP 43 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~ 43 (168)
.++.|++|.|+|++++.+..++ .|.++....
T Consensus 71 ~g~~h~~f~v~d~~~~~~~l~~-~G~~~~~~~ 101 (128)
T cd07249 71 EGLHHIAFEVDDIDAALARLKA-QGVRLLQEG 101 (128)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-CCCeeeccC
Confidence 5678999999999999999987 788876643
No 116
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=91.82 E-value=1.2 Score=31.76 Aligned_cols=56 Identities=13% Similarity=0.293 Sum_probs=39.0
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCC-cceeEE-ecCCcEEEEeecCCC
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFN-FDGAWL-FGHGIGIHLLQSENP 68 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~-~~~~~~-~~~~~~~~l~~~~~~ 68 (168)
.+++|++|.|.|++++.+.+++ .|.++........ ....|+ ..++..++|++..+-
T Consensus 120 ~G~~Hlaf~V~Dvd~~~~~L~~-~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~~~ 177 (185)
T PLN03042 120 RGFGHIGITVDDVYKACERFEK-LGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLKRI 177 (185)
T ss_pred CCccEEEEEcCCHHHHHHHHHH-CCCeEEeCCccCCceeEEEEECCCCCEEEEEECCCc
Confidence 3789999999999999999998 9998775432111 122332 345667888876554
No 117
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=91.75 E-value=2.3 Score=27.09 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=39.3
Q ss_pred CceEEEEEeCCHHHHHHHHHHc-CCeEEeeeeee-CCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 80 KDNHLSFQCESVGNVEKFLKEM-GIKYVRALVEE-GGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 80 ~~~hl~~~v~dl~~~~~~l~~~-g~~~~~~~~~~-~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
++.|+++.|.|+++..+...+. |.++....... .+......++...+ ..+++.....
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~ 59 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGE-GHIELFLNPS 59 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTS-SCEEEEEEES
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccc-cceeeeeecc
Confidence 4689999999999999999985 99988765522 22233334444444 4577777654
No 118
>PRK10291 glyoxalase I; Provisional
Probab=91.21 E-value=1.7 Score=28.38 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=37.5
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCC--CC-cceeE-EecCCcEEEEeecCC
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGS--FN-FDGAW-LFGHGIGIHLLQSEN 67 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~--~~-~~~~~-~~~~~~~~~l~~~~~ 67 (168)
..++|++|.|+|++++.+-.++ .|.++...... .. ...+| ...++..++|++...
T Consensus 64 ~~~~hlaf~V~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 64 TAYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred CCeeEEEEEeCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 3688999999999999999987 88877643211 11 11233 345567888888664
No 119
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=90.37 E-value=1.5 Score=28.92 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=34.1
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHc--cCCeeeccCCCCCcc----eeEEecCCcEEEEee
Q 030972 12 KSVNHVSLVCRNISESIDFYQNV--LGFVPIRRPGSFNFD----GAWLFGHGIGIHLLQ 64 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~--LG~~~~~~~~~~~~~----~~~~~~~~~~~~l~~ 64 (168)
.+++|+++.|.|++...+++..+ .|+++.......... ..+...++..+++..
T Consensus 61 ~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~ 119 (134)
T cd08360 61 AGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGA 119 (134)
T ss_pred CcceEEEEEeCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEc
Confidence 57899999999999999877776 677655332211111 123344556777764
No 120
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=89.52 E-value=2.9 Score=26.98 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=36.6
Q ss_pred CceEEEEEeCCHHHHHHHHHHc----CCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 80 KDNHLSFQCESVGNVEKFLKEM----GIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 80 ~~~hl~~~v~dl~~~~~~l~~~----g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
++.|+.+.|.|++++.+...+. |.+..... ..+ ..|+...++..++|....+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~--~~~----~~~~~~~~~~~i~l~~~~~ 56 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEW--EDG----RSWRAGDGGTYLVLQQADG 56 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEee--ccC----ceEEecCCceEEEEEeccc
Confidence 4689999999999999988886 88876543 111 1333335667888887654
No 121
>PRK11478 putative lyase; Provisional
Probab=88.79 E-value=3.1 Score=26.88 Aligned_cols=29 Identities=7% Similarity=0.150 Sum_probs=24.8
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeec
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIR 41 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~ 41 (168)
.++.|++|.|+|++++.+-..+ .|.+...
T Consensus 74 ~g~~hi~f~v~d~~~~~~~l~~-~G~~~~~ 102 (129)
T PRK11478 74 CGLRHLAFSVDDIDAAVAHLES-HNVKCEA 102 (129)
T ss_pred CceeEEEEEeCCHHHHHHHHHH-cCCeeec
Confidence 4578999999999999998887 8988654
No 122
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=88.42 E-value=2.3 Score=27.36 Aligned_cols=30 Identities=13% Similarity=0.357 Sum_probs=25.1
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeecc
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRR 42 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~ 42 (168)
.++.|++|.|.|++++.+..++ .|.++...
T Consensus 71 ~g~~~i~~~v~di~~~~~~l~~-~G~~~~~~ 100 (128)
T TIGR03081 71 GGIHHIAIEVDDIEAALETLKE-KGVRLIDE 100 (128)
T ss_pred CceEEEEEEcCCHHHHHHHHHH-CCCcccCC
Confidence 4677999999999999999887 78887653
No 123
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.00 E-value=6.5 Score=26.79 Aligned_cols=98 Identities=15% Similarity=0.100 Sum_probs=55.1
Q ss_pred eCCHHHHHHHHHHccCCeeec------cCCCCC----cceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeC-
Q 030972 21 CRNISESIDFYQNVLGFVPIR------RPGSFN----FDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCE- 89 (168)
Q Consensus 21 v~D~~~a~~FY~~~LG~~~~~------~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~- 89 (168)
-.+.++|..||.++|-=..+. .....+ ...+-+..++..+..+.......- .-+.-..+-+.++
T Consensus 13 ~~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~f~~ld~g~~~~f-----~fneA~S~~v~~~~ 87 (151)
T COG3865 13 DGNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQSFMALDGGPNTSF-----KFNEAFSFQVACDD 87 (151)
T ss_pred CCcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeEEEEEcCCCCcCC-----CcCccEEEEEEcCC
Confidence 389999999999987533322 111111 112223444544444333222111 1112244555555
Q ss_pred --CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEe
Q 030972 90 --SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 90 --dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 134 (168)
.+|++...|...|.+. ..+.+++|..|.-|.|+=
T Consensus 88 q~E~Drlwnal~~~g~e~-----------~~cgW~kDKfGVSWQi~p 123 (151)
T COG3865 88 QEEIDRLWNALSDNGGEA-----------EACGWLKDKFGVSWQIVP 123 (151)
T ss_pred HHHHHHHHHHHhccCcch-----------hcceeEecccCcEEEEcH
Confidence 4677788888777621 144789999999999984
No 124
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=87.78 E-value=4.4 Score=26.78 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=39.0
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCC--CCcceeEE-ecCCcEEEEeecCCC
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGS--FNFDGAWL-FGHGIGIHLLQSENP 68 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~--~~~~~~~~-~~~~~~~~l~~~~~~ 68 (168)
.++.|++|.|+|++++.+-.++ .|.++...... .....+++ ..++..++|++....
T Consensus 68 ~g~~hia~~V~Dvda~~~~l~~-~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 68 DGVCDVAFRVDDAAAAYERAVA-RGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-cCCeEccCceecCCeEEEEEEeccCCcEEEEEecCCC
Confidence 4678999999999999999997 89998765443 11222333 244567888775544
No 125
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=86.64 E-value=6.2 Score=25.05 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=36.0
Q ss_pred ceEEEEEeCCHHHHHHHHHHc-CCeEEeeeee-eCCeeEEEEEEECCCCCEEEEEeeC
Q 030972 81 DNHLSFQCESVGNVEKFLKEM-GIKYVRALVE-EGGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 81 ~~hl~~~v~dl~~~~~~l~~~-g~~~~~~~~~-~~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
+.|+++.|+|+++..+...+. |.+....-.. ..+. ...|+.-.+|..++|++..
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 57 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGF--ESYFLSFDDGARLELMTRP 57 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCc--eEEEEecCCCcEEEEEcCc
Confidence 579999999999999988884 8876432111 1121 2234443467889998754
No 126
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=86.56 E-value=6.2 Score=24.97 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=37.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHc-CCeEEeeeeeeCCeeEEEEEEECCC---CCEEEEEeeC
Q 030972 81 DNHLSFQCESVGNVEKFLKEM-GIKYVRALVEEGGILVEQLFFHDPD---GFMIEICDCD 136 (168)
Q Consensus 81 ~~hl~~~v~dl~~~~~~l~~~-g~~~~~~~~~~~g~~~~~~~~~DPd---G~~iel~~~~ 136 (168)
+.|+++.|.|++++.+...+. |++.........+ ....+++..++ +..+++....
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~ 59 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEG-KFTLVFLGYPDEDSEGVLELTYNW 59 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCC-ceEEEEecCCCCCCccEEEEEecC
Confidence 479999999999999999875 9987654322221 12224555444 5788887643
No 127
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=86.17 E-value=6.1 Score=24.68 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=35.2
Q ss_pred EEEEEeCCHHHHHHHHHH-cCCeEEeeeeeeCCeeEEEEEEECCCC--CEEEEEeeC
Q 030972 83 HLSFQCESVGNVEKFLKE-MGIKYVRALVEEGGILVEQLFFHDPDG--FMIEICDCD 136 (168)
Q Consensus 83 hl~~~v~dl~~~~~~l~~-~g~~~~~~~~~~~g~~~~~~~~~DPdG--~~iel~~~~ 136 (168)
|+++.|.|+++..+...+ .|.++........+ ...+.+.++++ ..++|....
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~ 55 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGG--FRWVTVAPPGSPETSLVLAPPA 55 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCC--cEEEEEeCCCCCeeEEEEeCCC
Confidence 789999999999999988 69988654321122 23355666654 467766544
No 128
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=86.10 E-value=3.3 Score=25.56 Aligned_cols=53 Identities=11% Similarity=0.190 Sum_probs=35.9
Q ss_pred ceEEEEEeCCHHHHHHHHHH-cCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 81 DNHLSFQCESVGNVEKFLKE-MGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 81 ~~hl~~~v~dl~~~~~~l~~-~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
+.|+++.|+|++++.+...+ .|......+... . ...++...++..++|.....
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~--~--~~~~~~~~~~~~i~l~~~~~ 54 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL--F--PGAWLYAGDGPQLHLIEEDP 54 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC--C--CceEEEeCCCcEEEEEecCC
Confidence 47999999999999998874 588775443211 1 12455555556788887644
No 129
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=85.86 E-value=5.8 Score=24.04 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=37.2
Q ss_pred EEEEEeCCHHHHHHHHHH-cCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 83 HLSFQCESVGNVEKFLKE-MGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 83 hl~~~v~dl~~~~~~l~~-~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
|+.+.+.|+++..+...+ .|.+....... .. ...+++.+. +..++|.....
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~-~~--~~~~~~~~~-~~~i~l~~~~~ 52 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN-GG--AEFAVLGLG-GTRLELFEGDE 52 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc-CC--EEEEEEecC-CceEEEecCCC
Confidence 788999999999999998 79987665421 11 233556554 78999998754
No 130
>PRK11700 hypothetical protein; Provisional
Probab=85.84 E-value=11 Score=26.97 Aligned_cols=75 Identities=11% Similarity=0.062 Sum_probs=46.8
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCC-CcceeEE------ecCCcEEEEeecCCCCCCCCCCCCCCCceEE
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSF-NFDGAWL------FGHGIGIHLLQSENPDSLPKKSVINPKDNHL 84 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~-~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl 84 (168)
-.++||.++|.+.+.|.+|-+.++..-..-..... +...+.+ ..++.++..++-+-+.... ....|.-|+
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~k~---Yp~eGWEHI 114 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGEKR---YPHEGWEHI 114 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCCC---CCCCCceEE
Confidence 45799999999999999999887655432211111 1112222 2345677777766654322 224588999
Q ss_pred EEEeC
Q 030972 85 SFQCE 89 (168)
Q Consensus 85 ~~~v~ 89 (168)
-+-++
T Consensus 115 ElVlp 119 (187)
T PRK11700 115 ELVLP 119 (187)
T ss_pred EEEec
Confidence 99887
No 131
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=85.66 E-value=7.4 Score=27.73 Aligned_cols=75 Identities=15% Similarity=0.105 Sum_probs=41.3
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeE-------EecCCcEEEEeecCCCCCCCCCCCCCCCceEE
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAW-------LFGHGIGIHLLQSENPDSLPKKSVINPKDNHL 84 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl 84 (168)
-.++||+++|.+.+.+.+|-+.++..-..-.......+.+. +..++..+.+++-+-+.... ....|.-|+
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~K~---Yp~eGWEHI 109 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVELPYPKDKR---YPQEGWEHI 109 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---SS-----SS-EEEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCCCC---CCCCCceEE
Confidence 46899999999999999999998766533211101111111 13456677777766654321 123578899
Q ss_pred EEEeC
Q 030972 85 SFQCE 89 (168)
Q Consensus 85 ~~~v~ 89 (168)
.|-++
T Consensus 110 E~Vip 114 (185)
T PF06185_consen 110 EFVIP 114 (185)
T ss_dssp EEE--
T ss_pred EEEec
Confidence 99887
No 132
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=85.42 E-value=5.4 Score=27.34 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=31.5
Q ss_pred ceeeeEEEEeCC---HHHHHHHHHHccCCeeeccCCCCCcceeEEe-cCCcEEEEeecC
Q 030972 12 KSVNHVSLVCRN---ISESIDFYQNVLGFVPIRRPGSFNFDGAWLF-GHGIGIHLLQSE 66 (168)
Q Consensus 12 ~~l~hv~l~v~D---~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 66 (168)
.+++|++|.|+| ++++.+...+ .|+.............+|+. .+|..+++....
T Consensus 64 ~~l~Hiaf~v~d~~dvd~~~~~L~~-~Gv~~~~~~~~~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 64 GTVHHVAFRVPDDEELEAWKERLEA-LGLPVSGIVDRFYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHH-CCCCcccccccccEEEEEEECCCCcEEEEEECC
Confidence 468899999999 5555555554 57764332221112233443 445677777654
No 133
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=84.96 E-value=4.9 Score=27.33 Aligned_cols=54 Identities=9% Similarity=0.028 Sum_probs=32.3
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHc--cCCeeeccCCCC--C-cceeEE-ecCCcEEEEeec
Q 030972 12 KSVNHVSLVCRNISESIDFYQNV--LGFVPIRRPGSF--N-FDGAWL-FGHGIGIHLLQS 65 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~--LG~~~~~~~~~~--~-~~~~~~-~~~~~~~~l~~~ 65 (168)
.+++|++|.|.|++++.+.+..+ .|+++....+.. + ...+|+ ..++..+++...
T Consensus 66 ~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~ 125 (153)
T cd07257 66 SGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTD 125 (153)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcC
Confidence 57899999999999998444432 777765432211 1 111222 445667777643
No 134
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=84.83 E-value=5.6 Score=26.78 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=36.2
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccCC--CCC-cceeE-EecCCcEEEEeecC
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRPG--SFN-FDGAW-LFGHGIGIHLLQSE 66 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~--~~~-~~~~~-~~~~~~~~~l~~~~ 66 (168)
.++.|++|.|.|++++.+...+ .|.++..... ... ....| ...++..+++++..
T Consensus 85 ~g~~hi~f~v~dld~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 142 (150)
T TIGR00068 85 NGFGHIAIGVDDVYKACERVRA-LGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRK 142 (150)
T ss_pred CceeEEEEecCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEECC
Confidence 3678999999999999999988 8887765432 111 11223 34456677777644
No 135
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=81.64 E-value=14 Score=25.28 Aligned_cols=73 Identities=11% Similarity=0.097 Sum_probs=45.6
Q ss_pred eeeEEEEeCCHHHHHHHHHHccCCeeeccCCCC-CcceeEE------ecCCcEEEEeecCCCCCCCCCCCCCCCceEEEE
Q 030972 14 VNHVSLVCRNISESIDFYQNVLGFVPIRRPGSF-NFDGAWL------FGHGIGIHLLQSENPDSLPKKSVINPKDNHLSF 86 (168)
Q Consensus 14 l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~-~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~ 86 (168)
++||.++|.+.+.+.+|-+.++..-..-..... +...+.+ ..++.++..++-+-+.... ....|.-|+-+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~k~---Yp~eGWEHIE~ 78 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGRPIALIKLEKPLQFAGWSISIVELPFPKDKK---YPQEGWEHIEI 78 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCCC---CCCCCceEEEE
Confidence 689999999999999999987665432221111 1112222 2345677777766653321 22458889999
Q ss_pred EeC
Q 030972 87 QCE 89 (168)
Q Consensus 87 ~v~ 89 (168)
-++
T Consensus 79 Vlp 81 (149)
T cd07268 79 VIP 81 (149)
T ss_pred Eec
Confidence 886
No 136
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.02 E-value=8.6 Score=22.88 Aligned_cols=40 Identities=13% Similarity=0.272 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCeEEeeeeeeCC-eeEEEEEEECCCCCEE
Q 030972 91 VGNVEKFLKEMGIKYVRALVEEGG-ILVEQLFFHDPDGFMI 130 (168)
Q Consensus 91 l~~~~~~l~~~g~~~~~~~~~~~g-~~~~~~~~~DPdG~~i 130 (168)
+.++.+-|.+.|+.+........| ...-.||+.|.+|+.+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 567788899999999877665544 3456699999999876
No 137
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=80.93 E-value=9.2 Score=25.64 Aligned_cols=53 Identities=8% Similarity=-0.024 Sum_probs=31.6
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHc--cCCeeeccCCC---CCcceeE-EecCCcEEEEee
Q 030972 12 KSVNHVSLVCRNISESIDFYQNV--LGFVPIRRPGS---FNFDGAW-LFGHGIGIHLLQ 64 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~--LG~~~~~~~~~---~~~~~~~-~~~~~~~~~l~~ 64 (168)
.+++|++|.|.|+++..+.++.+ .|.++...... .....+| ...++..++|+.
T Consensus 66 ~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 66 GKLHHFSFFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence 46889999999999865544442 67776532211 1112233 345566788765
No 138
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=80.78 E-value=11 Score=26.83 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=40.5
Q ss_pred CceEEEEEeC--CHHHHHHHHHH-cCCeEEeeeeeeC-CeeEEEEEEECCCC-CEEEEEeeC
Q 030972 80 KDNHLSFQCE--SVGNVEKFLKE-MGIKYVRALVEEG-GILVEQLFFHDPDG-FMIEICDCD 136 (168)
Q Consensus 80 ~~~hl~~~v~--dl~~~~~~l~~-~g~~~~~~~~~~~-g~~~~~~~~~DPdG-~~iel~~~~ 136 (168)
++.|+++.|+ |++++.+..++ .|.+......... ....++..+..|+| ..++|.++.
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~ 64 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPA 64 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCC
Confidence 5789999999 99999999876 6998755432211 12345677788764 568888754
No 139
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=79.72 E-value=12 Score=23.34 Aligned_cols=30 Identities=10% Similarity=0.025 Sum_probs=24.7
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeeccC
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRRP 43 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~ 43 (168)
...|+.|.|+|++++.+-..+ .|.++....
T Consensus 61 ~~~~~~f~v~di~~~~~~l~~-~g~~~~~~~ 90 (114)
T cd07247 61 PGWLVYFAVDDVDAAAARVEA-AGGKVLVPP 90 (114)
T ss_pred CeEEEEEEeCCHHHHHHHHHH-CCCEEEeCC
Confidence 456899999999999998887 798877543
No 140
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=78.36 E-value=15 Score=23.82 Aligned_cols=57 Identities=16% Similarity=0.241 Sum_probs=33.6
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHc--cCCeeeccCCCCCcceeE-EecCCcEEEEeecCCC
Q 030972 12 KSVNHVSLVCRNISESIDFYQNV--LGFVPIRRPGSFNFDGAW-LFGHGIGIHLLQSENP 68 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~--LG~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 68 (168)
..++|++|.|.|++.-.++|+.+ .|.+.............+ ...++..++++....+
T Consensus 64 ~~~~h~~f~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 64 AGLNHIAFEVDSLDDLRDLYERLRAAGITPVWPVDHGNAWSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHHCCCCccccCCCCceeEEEEECCCCCEEEEEEcCCC
Confidence 46889999999998877777765 466544422211112222 3345566777654443
No 141
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=78.27 E-value=18 Score=24.47 Aligned_cols=57 Identities=11% Similarity=0.228 Sum_probs=36.5
Q ss_pred CCceEEEEEeCCHHHHHHHHHH-cCCeEEeeeeeeC--CeeEEEEEEE-CCCCCEEEEEee
Q 030972 79 PKDNHLSFQCESVGNVEKFLKE-MGIKYVRALVEEG--GILVEQLFFH-DPDGFMIEICDC 135 (168)
Q Consensus 79 ~~~~hl~~~v~dl~~~~~~l~~-~g~~~~~~~~~~~--g~~~~~~~~~-DPdG~~iel~~~ 135 (168)
.++.|+++.|+|+++..+..++ .|.++........ +.....+|+. +..++.+.+...
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 68 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEG 68 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcC
Confidence 4789999999999999999987 6998754322110 1112234443 455666776543
No 142
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=78.00 E-value=12 Score=25.02 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=22.1
Q ss_pred cceeeeEEEEeCCHHHHHHHHHHc--cCCeeec
Q 030972 11 LKSVNHVSLVCRNISESIDFYQNV--LGFVPIR 41 (168)
Q Consensus 11 ~~~l~hv~l~v~D~~~a~~FY~~~--LG~~~~~ 41 (168)
-.+++|++|.|.|++...++++.+ .|.++..
T Consensus 54 ~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~ 86 (141)
T cd07258 54 SSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVF 86 (141)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHCCCcEEe
Confidence 358999999999887655555554 6776554
No 143
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=77.68 E-value=10 Score=23.37 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=26.4
Q ss_pred cceeeeEEEEeCCHHHHHHHHHHccCCeeecc
Q 030972 11 LKSVNHVSLVCRNISESIDFYQNVLGFVPIRR 42 (168)
Q Consensus 11 ~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~ 42 (168)
-.+..|+.|.|.|++++.+.+.+ +|.++...
T Consensus 54 ~~~~~~~~~~v~dv~~~~~~l~~-~G~~~~~~ 84 (108)
T PF12681_consen 54 PGGGFHLCFEVEDVDALYERLKE-LGAEIVTE 84 (108)
T ss_dssp SSSEEEEEEEESHHHHHHHHHHH-TTSEEEEE
T ss_pred CCceeEEEEEEcCHHHHHHHHHH-CCCeEeeC
Confidence 34677999999999999999998 89887653
No 144
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=77.23 E-value=14 Score=23.29 Aligned_cols=26 Identities=4% Similarity=0.101 Sum_probs=22.2
Q ss_pred eEEEEeCCHHHHHHHHHHccCCeeecc
Q 030972 16 HVSLVCRNISESIDFYQNVLGFVPIRR 42 (168)
Q Consensus 16 hv~l~v~D~~~a~~FY~~~LG~~~~~~ 42 (168)
|+.+.|+|++++.+...+ .|.++...
T Consensus 69 ~~~~~v~did~~~~~l~~-~G~~~~~~ 94 (119)
T cd08359 69 ILNFEVDDVDAEYERLKA-EGLPIVLP 94 (119)
T ss_pred EEEEEECCHHHHHHHHHh-cCCCeeec
Confidence 899999999999999998 78776543
No 145
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.81 E-value=6.3 Score=22.05 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.9
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeE
Q 030972 80 KDNHLSFQCESVGNVEKFLKEMGIKY 105 (168)
Q Consensus 80 ~~~hl~~~v~dl~~~~~~l~~~g~~~ 105 (168)
+...+.|.+++.+.+.+.|+++|+.+
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 45778999999999999999999876
No 146
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=76.02 E-value=15 Score=23.29 Aligned_cols=49 Identities=8% Similarity=0.125 Sum_probs=31.9
Q ss_pred ceEEEEEeCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEe
Q 030972 81 DNHLSFQCESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 81 ~~hl~~~v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 134 (168)
+.|+++.|+|+++..+.-+..|.++..... +. ..+.+..++|..+.+..
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~LGf~~~~~~~---~~--~~~~~~~~~~~~l~l~~ 49 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRRLGFDFPEEAD---DE--PHVEAVLPGGVRLAWDT 49 (122)
T ss_pred CceEEEEeccHHHHHHHHHHhCceecCCcC---CC--CcEEEEeCCCEEEEEEc
Confidence 368999999999999988878887643211 11 11444555566665544
No 147
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=75.90 E-value=17 Score=22.90 Aligned_cols=53 Identities=9% Similarity=-0.087 Sum_probs=32.2
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHccCCeeeccCC-CCCcceeEE-ecCCcEEEEeec
Q 030972 12 KSVNHVSLVCRNISESIDFYQNVLGFVPIRRPG-SFNFDGAWL-FGHGIGIHLLQS 65 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~-~~~~~~~~~-~~~~~~~~l~~~ 65 (168)
.++.|++|.|.|.++..+..+. +|........ ......+|+ ..++..++++..
T Consensus 56 ~~~~~~af~v~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 56 ARFVGAAFEAASRADLEKAAAL-PGASVIDDLEAPGGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CcccEEEEEECCHHHHHHHHHc-CCCeeecCCCCCCCceEEEEECCCCCEEEEEec
Confidence 4678999999999988888664 8887654321 111112333 344556666543
No 148
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=75.82 E-value=23 Score=24.37 Aligned_cols=30 Identities=17% Similarity=0.424 Sum_probs=25.3
Q ss_pred CCceEEEEEeCCHHHHHHHHHH-cCCeEEee
Q 030972 79 PKDNHLSFQCESVGNVEKFLKE-MGIKYVRA 108 (168)
Q Consensus 79 ~~~~hl~~~v~dl~~~~~~l~~-~g~~~~~~ 108 (168)
.++.|+++.|+|+++..+...+ .|++....
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~ 35 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQ 35 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEE
Confidence 3678999999999999999986 69987544
No 149
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=74.70 E-value=20 Score=24.07 Aligned_cols=55 Identities=24% Similarity=0.193 Sum_probs=33.0
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHc--cCCeeeccCCC---CCccee-EEecCCcEEEEeecC
Q 030972 12 KSVNHVSLVCRNISESIDFYQNV--LGFVPIRRPGS---FNFDGA-WLFGHGIGIHLLQSE 66 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~--LG~~~~~~~~~---~~~~~~-~~~~~~~~~~l~~~~ 66 (168)
.++.|++|.|.|++...+++..+ .|.+....... .....+ +...+|..+++++..
T Consensus 58 ~~~~hiaf~v~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~ 118 (144)
T cd07239 58 PSLNHVAFEMPSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSEL 118 (144)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCc
Confidence 46789999999999998666554 56655432211 111122 344556677776543
No 150
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=74.66 E-value=16 Score=22.97 Aligned_cols=28 Identities=11% Similarity=0.362 Sum_probs=24.2
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeEEe
Q 030972 80 KDNHLSFQCESVGNVEKFLKEMGIKYVR 107 (168)
Q Consensus 80 ~~~hl~~~v~dl~~~~~~l~~~g~~~~~ 107 (168)
++.|+++.|.|+++..+.....|.++..
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~ 29 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVRE 29 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEe
Confidence 5789999999999999988878888753
No 151
>PRK06724 hypothetical protein; Provisional
Probab=74.13 E-value=18 Score=23.76 Aligned_cols=53 Identities=15% Similarity=0.200 Sum_probs=29.5
Q ss_pred ceeeeEEEEe---CCHHHHHHHHHHccCCeeeccCCC-----CCccee-EEecCCcEEEEeec
Q 030972 12 KSVNHVSLVC---RNISESIDFYQNVLGFVPIRRPGS-----FNFDGA-WLFGHGIGIHLLQS 65 (168)
Q Consensus 12 ~~l~hv~l~v---~D~~~a~~FY~~~LG~~~~~~~~~-----~~~~~~-~~~~~~~~~~l~~~ 65 (168)
.++.|++|.| .|+++..+...+ .|.+....+.. .+...+ +...++..+++...
T Consensus 62 ~g~~h~af~v~~~~dvd~~~~~l~~-~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 62 LGPRHICYQAINRKVVDEVAEFLSS-TKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred CCceeEEEecCChHHHHHHHHHHHH-CCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 3678999998 555555555555 78876543221 111122 33445566666543
No 152
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=73.81 E-value=18 Score=23.61 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=20.7
Q ss_pred eeeeEEEEeC--CHHHHHHHHHHccCCeeec
Q 030972 13 SVNHVSLVCR--NISESIDFYQNVLGFVPIR 41 (168)
Q Consensus 13 ~l~hv~l~v~--D~~~a~~FY~~~LG~~~~~ 41 (168)
.++|++|.|+ |+++..+-.++ .|++...
T Consensus 66 ~~~Hiaf~v~~~~ld~~~~~l~~-~gv~~~~ 95 (131)
T cd08364 66 TYNHIAFKISDSDVDEYTERIKA-LGVEMKP 95 (131)
T ss_pred CceEEEEEcCHHHHHHHHHHHHH-CCCEEec
Confidence 5899999998 56666666665 7877543
No 153
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=72.75 E-value=21 Score=22.42 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=23.8
Q ss_pred ceeeeEEEEeCC-HHHHHHHHHHccCCeeec
Q 030972 12 KSVNHVSLVCRN-ISESIDFYQNVLGFVPIR 41 (168)
Q Consensus 12 ~~l~hv~l~v~D-~~~a~~FY~~~LG~~~~~ 41 (168)
.++.|++|.+.+ ++++.+.+++ .|.+...
T Consensus 66 ~~~~hi~~~~~~~~~~~~~~l~~-~G~~~~~ 95 (125)
T cd07253 66 PGSDDLCLITEPPIDELVAHLEA-HGVPIEE 95 (125)
T ss_pred CCCceEEEEecccHHHHHHHHHH-CCceeec
Confidence 467899999975 9999999887 7887654
No 154
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=71.70 E-value=23 Score=22.46 Aligned_cols=50 Identities=4% Similarity=0.137 Sum_probs=35.5
Q ss_pred CceEEEEEeCCHHHHHHHHHH-cCCeEEeeeeeeCCeeEEEEEEECCC-CCEEEEEeeC
Q 030972 80 KDNHLSFQCESVGNVEKFLKE-MGIKYVRALVEEGGILVEQLFFHDPD-GFMIEICDCD 136 (168)
Q Consensus 80 ~~~hl~~~v~dl~~~~~~l~~-~g~~~~~~~~~~~g~~~~~~~~~DPd-G~~iel~~~~ 136 (168)
.+.|+.+.|+|+++..+...+ .|.++.... + . .+++...+ +..+.|...+
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~----~-~--~~~l~~~~~~~~l~l~~~~ 53 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERT----D-S--TAVLGTGGKRPLLVLEEDP 53 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcC----C-C--EEEEecCCCeEEEEEEeCC
Confidence 468999999999999999987 599886541 1 1 14455444 5677777654
No 155
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=70.95 E-value=19 Score=23.00 Aligned_cols=29 Identities=10% Similarity=0.193 Sum_probs=20.6
Q ss_pred ceeeeEEEEe--CCHHHHHHHHHHccCCeeec
Q 030972 12 KSVNHVSLVC--RNISESIDFYQNVLGFVPIR 41 (168)
Q Consensus 12 ~~l~hv~l~v--~D~~~a~~FY~~~LG~~~~~ 41 (168)
..+.|+++.+ +|++++.+-.++ .|.++..
T Consensus 56 ~~~~hi~f~v~~~dl~~~~~~l~~-~G~~~~~ 86 (121)
T cd07244 56 KDYTHYAFSVSEEDFASLKEKLRQ-AGVKEWK 86 (121)
T ss_pred CCeeeEEEEeCHHHHHHHHHHHHH-cCCcccC
Confidence 4578999988 467777777766 6776544
No 156
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=70.88 E-value=23 Score=22.08 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=23.7
Q ss_pred eeeEEEEeCCHHHHHHHHHHccCCeeecc
Q 030972 14 VNHVSLVCRNISESIDFYQNVLGFVPIRR 42 (168)
Q Consensus 14 l~hv~l~v~D~~~a~~FY~~~LG~~~~~~ 42 (168)
..|+.+.|.|++++.+-+.+ .|.+....
T Consensus 58 ~~~i~~~v~d~~~~~~~l~~-~G~~~~~~ 85 (112)
T cd07238 58 VPDLSIEVDDVDAALARAVA-AGFAIVYG 85 (112)
T ss_pred CCEEEEEeCCHHHHHHHHHh-cCCeEecC
Confidence 46999999999999998887 88887654
No 157
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=70.14 E-value=26 Score=23.06 Aligned_cols=29 Identities=7% Similarity=0.095 Sum_probs=23.1
Q ss_pred ceeeeEEEEeC--CHHHHHHHHHHccCCeeec
Q 030972 12 KSVNHVSLVCR--NISESIDFYQNVLGFVPIR 41 (168)
Q Consensus 12 ~~l~hv~l~v~--D~~~a~~FY~~~LG~~~~~ 41 (168)
.+++|++|.+. |++++.+...+ .|.++..
T Consensus 62 ~~~~hiaf~v~~~dv~~~~~~l~~-~G~~i~~ 92 (139)
T PRK04101 62 QSYTHIAFSIEEEDFDHWYQRLKE-NDVNILP 92 (139)
T ss_pred CCeeEEEEEecHHHHHHHHHHHHH-CCceEcC
Confidence 35789999887 88888888887 7887654
No 158
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=69.41 E-value=18 Score=22.53 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=29.9
Q ss_pred ceeeeEEEEeC--CHHHHHHHHHHccCCeeeccCC--CCCcceeEE-ecCCcEEEEee
Q 030972 12 KSVNHVSLVCR--NISESIDFYQNVLGFVPIRRPG--SFNFDGAWL-FGHGIGIHLLQ 64 (168)
Q Consensus 12 ~~l~hv~l~v~--D~~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~-~~~~~~~~l~~ 64 (168)
..++|++|.|. |+++..+-..+ .|.++..... .......|+ ..++..++++.
T Consensus 54 ~~~~hiaf~v~~~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 54 RTYTHIAFQIQSEEFDEYTERLKA-LGVEMKPERPRVQGEGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred CCccEEEEEcCHHHHHHHHHHHHH-cCCccCCCccccCCCceEEEEECCCCCEEEEEe
Confidence 35689999994 67777777776 7887654211 111123333 34556666653
No 159
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=68.64 E-value=14 Score=23.93 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEE
Q 030972 89 ESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIE 131 (168)
Q Consensus 89 ~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 131 (168)
.|++.+.+.|+++|+++... ..+|...+.++|.--+|..+-
T Consensus 64 rNv~~a~~~L~~~gi~I~a~--dvGG~~~R~v~f~~~tG~v~v 104 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAE--DVGGNFGRKVRFDPATGEVWV 104 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEE--EE-SSS-EEEEEETTTTEEEE
T ss_pred HHHHHHHHHHHHCCCcEEEe--eCCCCCCcEEEEEcCCCEEEE
Confidence 48999999999999999764 345666788888877777653
No 160
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=67.42 E-value=37 Score=23.16 Aligned_cols=28 Identities=11% Similarity=0.381 Sum_probs=24.2
Q ss_pred CceEEEEEeCCHHHHHHHHHH-cCCeEEe
Q 030972 80 KDNHLSFQCESVGNVEKFLKE-MGIKYVR 107 (168)
Q Consensus 80 ~~~hl~~~v~dl~~~~~~l~~-~g~~~~~ 107 (168)
++.|+++.|.|+++..+...+ .|.++..
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYRDELGFRVSE 31 (161)
T ss_pred eEEEEEEecCCHHHHHHHHHhccCCEEEE
Confidence 578999999999999999887 6988753
No 161
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=67.37 E-value=29 Score=21.99 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=20.9
Q ss_pred eeeeEEEEeC---CHHHHHHHHHHccCCeeec
Q 030972 13 SVNHVSLVCR---NISESIDFYQNVLGFVPIR 41 (168)
Q Consensus 13 ~l~hv~l~v~---D~~~a~~FY~~~LG~~~~~ 41 (168)
+++|+++.|. |+++..+..++ .|.+...
T Consensus 61 ~~~hiaf~v~~~~dv~~~~~~l~~-~G~~~~~ 91 (122)
T cd07265 61 GLDFMGFKVLDDADLEKLEARLQA-YGVAVER 91 (122)
T ss_pred CeeEEEEEeCCHHHHHHHHHHHHH-CCCcEEE
Confidence 5789999997 66666666665 7887654
No 162
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=66.20 E-value=31 Score=21.81 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=22.3
Q ss_pred eeEEEEeCCHHHHHHHHHHccCCeeecc
Q 030972 15 NHVSLVCRNISESIDFYQNVLGFVPIRR 42 (168)
Q Consensus 15 ~hv~l~v~D~~~a~~FY~~~LG~~~~~~ 42 (168)
.|+.|.|+|++++.+...+ .|.+....
T Consensus 73 ~~~~~~v~di~~~~~~l~~-~G~~~~~~ 99 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVE-AGAVLVSE 99 (125)
T ss_pred EEEEEEcCCHHHHHHHHHH-cCCEeccC
Confidence 4789999999999998887 78877543
No 163
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=65.07 E-value=7.8 Score=29.91 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=22.9
Q ss_pred CCCCceEEEEEe------CCHHHHHHHHHHcCCeEE
Q 030972 77 INPKDNHLSFQC------ESVGNVEKFLKEMGIKYV 106 (168)
Q Consensus 77 ~~~~~~hl~~~v------~dl~~~~~~l~~~g~~~~ 106 (168)
.+...+|+...| .|++++.+.|+++|+++.
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 346789999999 999999999999999987
No 164
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=64.67 E-value=38 Score=22.41 Aligned_cols=29 Identities=28% Similarity=0.549 Sum_probs=24.3
Q ss_pred CceEEEEEeCCHHHHHHHHHH-cCCeEEee
Q 030972 80 KDNHLSFQCESVGNVEKFLKE-MGIKYVRA 108 (168)
Q Consensus 80 ~~~hl~~~v~dl~~~~~~l~~-~g~~~~~~ 108 (168)
.+.|+++.|.|+++..+.-.+ .|.+....
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~ 31 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRH 31 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEee
Confidence 468999999999999999865 69987653
No 165
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=61.81 E-value=35 Score=22.23 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=20.2
Q ss_pred ceeeeEEEEeCC--HHHHHHHHHHccCCeee
Q 030972 12 KSVNHVSLVCRN--ISESIDFYQNVLGFVPI 40 (168)
Q Consensus 12 ~~l~hv~l~v~D--~~~a~~FY~~~LG~~~~ 40 (168)
.+++|++|.+++ ++++.+-..+ .|.+..
T Consensus 58 ~~~~hiaf~v~~~dld~~~~~l~~-~G~~~~ 87 (131)
T cd08363 58 QSYTHIAFTIEDSEFDAFYTRLKE-AGVNIL 87 (131)
T ss_pred ccceEEEEEecHHHHHHHHHHHHH-cCCccc
Confidence 357899999974 7777766666 677654
No 166
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=61.41 E-value=25 Score=25.50 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=33.4
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCC
Q 030972 78 NPKDNHLSFQCESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPD 126 (168)
Q Consensus 78 ~~~~~hl~~~v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPd 126 (168)
+.+..+|.+.-.|+..+...++..|+.+........+.+.+.+||...|
T Consensus 31 g~~l~~i~i~~~~lk~F~k~AkKyGV~yav~kdk~~~~~~~~V~FkA~D 79 (204)
T PF12687_consen 31 GKGLKNIEITDEDLKEFKKEAKKYGVDYAVKKDKSTGPGKYDVFFKAKD 79 (204)
T ss_pred CCCceEEecCHhhHHHHHHHHHHcCCceEEeeccCCCCCcEEEEEEcCc
Confidence 3456777777789999999999999998655433333334556665444
No 167
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.22 E-value=24 Score=20.16 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=21.3
Q ss_pred CceEEEEEeC--CHHHHHHHHHHcCCeEEe
Q 030972 80 KDNHLSFQCE--SVGNVEKFLKEMGIKYVR 107 (168)
Q Consensus 80 ~~~hl~~~v~--dl~~~~~~l~~~g~~~~~ 107 (168)
+...+.|.++ +.+.+.+.|+++|+++..
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHHHHCCCeeeC
Confidence 3445556654 888999999999998864
No 168
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=60.44 E-value=40 Score=21.21 Aligned_cols=31 Identities=13% Similarity=0.254 Sum_probs=22.2
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHc--cCCeeecc
Q 030972 12 KSVNHVSLVCRNISESIDFYQNV--LGFVPIRR 42 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~--LG~~~~~~ 42 (168)
.++.|++|.|.|.+...++|+++ .|.++...
T Consensus 57 ~~~~h~~f~v~~~~dl~~~~~~l~~~G~~~~~~ 89 (120)
T cd07254 57 GGLNHLGVQVDSAEEVAEAKARAEAAGLPTFKE 89 (120)
T ss_pred CCeeEEEEEeCCHHHHHHHHHHHHHcCCeEEcc
Confidence 47889999999966666666654 47766543
No 169
>PRK03467 hypothetical protein; Provisional
Probab=60.24 E-value=50 Score=22.56 Aligned_cols=50 Identities=6% Similarity=0.088 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCCC
Q 030972 89 ESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDNL 138 (168)
Q Consensus 89 ~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~ 138 (168)
++++.+.+.|+++-+--.......+.+.-.++|..|+++..+-|.+.+..
T Consensus 5 ~~~~~I~~fl~~~hvltLa~~~~~~~w~A~cFY~fd~~~~~l~~~S~~~T 54 (144)
T PRK03467 5 DTLTAISRWLAKQHVVTLCVGQEGELWCANCFYVFDAQKVAFYLLTEEKT 54 (144)
T ss_pred hHHHHHHHHHHhCcEEEEEEEcCCCcceEEEEEEEcCCCeEEEEEcCCCC
Confidence 46778888888886654333222222344668888999999999987654
No 170
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=60.23 E-value=44 Score=21.60 Aligned_cols=52 Identities=15% Similarity=0.316 Sum_probs=32.6
Q ss_pred eEEEEEeCCHHHHHHHHHH-cCCeEEeeeeeeCCeeEEEEEEECC-CCCEEEEEee
Q 030972 82 NHLSFQCESVGNVEKFLKE-MGIKYVRALVEEGGILVEQLFFHDP-DGFMIEICDC 135 (168)
Q Consensus 82 ~hl~~~v~dl~~~~~~l~~-~g~~~~~~~~~~~g~~~~~~~~~DP-dG~~iel~~~ 135 (168)
.|+++.|+|++++.+...+ .|.+....... .+. ....|+... .+..+++...
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~ 54 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGD-PGV-DAAAFLRCDEDHHDLALFPG 54 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEcc-CCc-eeEEEEEcCCCcceEEEEcC
Confidence 4899999999999998877 69987543211 111 122444433 3445666654
No 171
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.17 E-value=35 Score=20.45 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCeEEeeeeeeCCe-eEEEEEEECCCCCEE
Q 030972 91 VGNVEKFLKEMGIKYVRALVEEGGI-LVEQLFFHDPDGFMI 130 (168)
Q Consensus 91 l~~~~~~l~~~g~~~~~~~~~~~g~-~~~~~~~~DPdG~~i 130 (168)
+-.+...|.+.|+.+........|. ..-.||+.|.+|..+
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl 55 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTL 55 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCcc
Confidence 4567788888999988776655443 456699999999865
No 172
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=58.35 E-value=44 Score=21.06 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=32.9
Q ss_pred ceEEEEEeCCHHHHHHHHHH----cCCeEEeeeeeeCCeeEEEEEEECC-CCCEEEEEeeC
Q 030972 81 DNHLSFQCESVGNVEKFLKE----MGIKYVRALVEEGGILVEQLFFHDP-DGFMIEICDCD 136 (168)
Q Consensus 81 ~~hl~~~v~dl~~~~~~l~~----~g~~~~~~~~~~~g~~~~~~~~~DP-dG~~iel~~~~ 136 (168)
+.|+.+.|.|+++..+..++ .|.+..... .+ . .+++..+ .+..+.+....
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~---~~-~--~~~~~~~~~~~~~~l~~~~ 55 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED---GP-G--AVGYGKGGGGPDFWVTKPF 55 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec---CC-c--eeEeccCCCCceEEEeccc
Confidence 36999999999999888877 488875432 11 1 1444444 35677776643
No 173
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.67 E-value=26 Score=21.19 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=23.5
Q ss_pred CceEEEEEeCC----HHHHHHHHHHcCCeEEe
Q 030972 80 KDNHLSFQCES----VGNVEKFLKEMGIKYVR 107 (168)
Q Consensus 80 ~~~hl~~~v~d----l~~~~~~l~~~g~~~~~ 107 (168)
+...+.+++++ ++.+.+.|+++|+++..
T Consensus 40 ~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 40 AHIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 44677888888 88999999999999864
No 174
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=57.35 E-value=48 Score=21.10 Aligned_cols=28 Identities=7% Similarity=0.075 Sum_probs=21.2
Q ss_pred eeeeEEEEeC--CHHHHHHHHHHccCCeeec
Q 030972 13 SVNHVSLVCR--NISESIDFYQNVLGFVPIR 41 (168)
Q Consensus 13 ~l~hv~l~v~--D~~~a~~FY~~~LG~~~~~ 41 (168)
...|+++.+. |+++..+...+ .|.+...
T Consensus 58 ~~~h~a~~v~~~dl~~~~~~l~~-~G~~~~~ 87 (123)
T cd08351 58 PPQHYAFLVSEEEFDRIFARIRE-RGIDYWA 87 (123)
T ss_pred CcceEEEEeCHHHHHHHHHHHHH-cCCceec
Confidence 3478888776 68888888888 6887643
No 175
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=56.87 E-value=48 Score=21.01 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=24.3
Q ss_pred CceEEEEEeCCHHHHHHHHHH-cCCeEEee
Q 030972 80 KDNHLSFQCESVGNVEKFLKE-MGIKYVRA 108 (168)
Q Consensus 80 ~~~hl~~~v~dl~~~~~~l~~-~g~~~~~~ 108 (168)
++.|+++.|.|+++..+...+ .|.+....
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDR 31 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccC
Confidence 467999999999999999977 59987543
No 176
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=56.67 E-value=25 Score=24.47 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEE
Q 030972 89 ESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMI 130 (168)
Q Consensus 89 ~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~i 130 (168)
.|++.+.+.|++.|+++... ..+|...+.++|.--+|..+
T Consensus 112 rNv~~a~~~L~~~gI~i~a~--dvGG~~gR~i~f~~~tG~v~ 151 (162)
T PRK13490 112 RNGKAVKKKLKELSIPILAE--DIGGNKGRTMIFDTSDGKVY 151 (162)
T ss_pred HHHHHHHHHHHHcCCcEEEE--ECCCCCCcEEEEECCCCEEE
Confidence 59999999999999999764 33455667788777677664
No 177
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=56.11 E-value=26 Score=24.34 Aligned_cols=40 Identities=30% Similarity=0.507 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEE
Q 030972 89 ESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMI 130 (168)
Q Consensus 89 ~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~i 130 (168)
.|++.+.+.|++.|+++... ..+|...+.++|.--+|..+
T Consensus 105 rNi~~a~~~L~~~gI~i~a~--dvGG~~gR~i~f~~~tG~v~ 144 (159)
T PRK13495 105 RNVEAVKKHLKDFGIKLVAE--DTGGNRARSIEYNIETGKLL 144 (159)
T ss_pred HHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEEE
Confidence 59999999999999999764 33455667788877777664
No 178
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=55.70 E-value=48 Score=20.65 Aligned_cols=29 Identities=7% Similarity=0.083 Sum_probs=22.6
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeecc
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRR 42 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~ 42 (168)
...|+.|.|.|++++.+-..+ .|.+....
T Consensus 68 ~~~~~~~~v~d~~~~~~~l~~-~G~~~~~~ 96 (122)
T cd07246 68 TPVSLHLYVEDVDATFARAVA-AGATSVMP 96 (122)
T ss_pred ceEEEEEEeCCHHHHHHHHHH-CCCeEecC
Confidence 456999999999998777765 68876654
No 179
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=55.28 E-value=28 Score=24.44 Aligned_cols=41 Identities=10% Similarity=0.119 Sum_probs=30.9
Q ss_pred eCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEE
Q 030972 88 CESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMI 130 (168)
Q Consensus 88 v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~i 130 (168)
-.|++.+.+.|++.|+++... ..+|...+.++|.--+|..+
T Consensus 114 ~rNi~~a~~~L~~~gi~i~a~--DvGG~~gR~i~f~~~tG~v~ 154 (167)
T PRK13498 114 DKNIHAALALAEQNGLHLKAQ--DLGSTGHRSIIFDLWNGNVW 154 (167)
T ss_pred HHHHHHHHHHHHHCCCcEEEE--eCCCCCCcEEEEECCCCEEE
Confidence 359999999999999999764 33455567787776667653
No 180
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=55.04 E-value=47 Score=20.32 Aligned_cols=25 Identities=8% Similarity=-0.013 Sum_probs=21.4
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCe
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFV 38 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~ 38 (168)
.-.|+.+.|+|++++.+-.++ +|.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~l~~-~G~~ 82 (112)
T cd08349 58 RGGSVYIEVEDVDALYAELKA-KGAD 82 (112)
T ss_pred CcEEEEEEeCCHHHHHHHHHH-cCCc
Confidence 445899999999999999987 7887
No 181
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=54.85 E-value=52 Score=20.78 Aligned_cols=28 Identities=7% Similarity=0.014 Sum_probs=18.5
Q ss_pred ceeeeEEEEeCCHHHHHHHHHHc--cCCee
Q 030972 12 KSVNHVSLVCRNISESIDFYQNV--LGFVP 39 (168)
Q Consensus 12 ~~l~hv~l~v~D~~~a~~FY~~~--LG~~~ 39 (168)
.+++|+++.|.+.+.-.++++.+ .|.++
T Consensus 61 ~~~~h~af~v~~~~~v~~~~~~l~~~G~~~ 90 (121)
T cd09013 61 AGLGHIAWRASSPEALERRVAALEASGLGI 90 (121)
T ss_pred CceEEEEEEcCCHHHHHHHHHHHHHcCCcc
Confidence 46889999998655555555443 56664
No 182
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=54.19 E-value=17 Score=16.32 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=9.4
Q ss_pred EEEEECCCCCEEE
Q 030972 119 QLFFHDPDGFMIE 131 (168)
Q Consensus 119 ~~~~~DPdG~~ie 131 (168)
...++|++|++|-
T Consensus 8 ~~i~~D~~G~lWi 20 (24)
T PF07494_consen 8 YSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEE-TTSCEEE
T ss_pred EEEEEcCCcCEEE
Confidence 3678899999873
No 183
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=53.34 E-value=32 Score=24.07 Aligned_cols=40 Identities=15% Similarity=0.128 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEE
Q 030972 89 ESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMI 130 (168)
Q Consensus 89 ~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~i 130 (168)
.|++.+.+.|++.|+++... ..+|...+.++|..-+|..+
T Consensus 114 rNv~~a~~~L~~~gI~i~a~--DvGG~~gR~i~f~~~tG~v~ 153 (163)
T PRK13494 114 ENSEFAVNTLNKYGIPILAK--DFDQSKSRKIFVFPENFKVI 153 (163)
T ss_pred HHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEEE
Confidence 58999999999999999764 33455667788877667653
No 184
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.92 E-value=11 Score=27.73 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHccCCeeeccC
Q 030972 22 RNISESIDFYQNVLGFVPIRRP 43 (168)
Q Consensus 22 ~D~~~a~~FY~~~LG~~~~~~~ 43 (168)
.|+.+++.||.+.||+++..-.
T Consensus 145 a~~~e~a~wy~dyLGleie~~h 166 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAGH 166 (246)
T ss_pred hccHHHHHHHHHhcCceeeecc
Confidence 5778889999999999987743
No 185
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=52.03 E-value=17 Score=23.97 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=48.9
Q ss_pred eeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEe--------------cCCcEEEE-eecCCCCCCCCCCCCC
Q 030972 14 VNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLF--------------GHGIGIHL-LQSENPDSLPKKSVIN 78 (168)
Q Consensus 14 l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~--------------~~~~~~~l-~~~~~~~~~~~~~~~~ 78 (168)
++-+-+.|++.+.+..-.++ -||.+.-... -++-+. ..+..+.. ......
T Consensus 42 FGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dV----laVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~e---------- 106 (142)
T COG4747 42 FGIIRMVVDRPDEAHSVLEE-AGFTVRETDV----LAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTE---------- 106 (142)
T ss_pred cceEEEEcCChHHHHHHHHH-CCcEEEeeeE----EEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeec----------
Confidence 44566789999999999988 8887654321 011110 00111111 111111
Q ss_pred CCceEEEEEeCCHHHHHHHHHHcCCeEEee
Q 030972 79 PKDNHLSFQCESVGNVEKFLKEMGIKYVRA 108 (168)
Q Consensus 79 ~~~~hl~~~v~dl~~~~~~l~~~g~~~~~~ 108 (168)
..-.-+.++++|++++.+.|++.|+++...
T Consensus 107 k~KAlli~r~ed~d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 107 KQKALLIVRVEDIDRAIKALEDAGIKLIGM 136 (142)
T ss_pred CceEEEEEEhhHHHHHHHHHHHcCCeecCh
Confidence 123567889999999999999999998653
No 186
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=51.95 E-value=25 Score=24.62 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=18.7
Q ss_pred EEEEeCCHHHHHHHHHHcCCeEEe
Q 030972 84 LSFQCESVGNVEKFLKEMGIKYVR 107 (168)
Q Consensus 84 l~~~v~dl~~~~~~l~~~g~~~~~ 107 (168)
+=+.+.|++.+.++|++.|.....
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~~ 29 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFIK 29 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCccccc
Confidence 345677999999999999876543
No 187
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=51.80 E-value=59 Score=20.48 Aligned_cols=28 Identities=4% Similarity=0.004 Sum_probs=21.9
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccC-Ceeec
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLG-FVPIR 41 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG-~~~~~ 41 (168)
...|+.|.|+|+++..+-.++ .| .+...
T Consensus 64 ~~~~l~~~v~dvd~~~~~l~~-~g~~~~~~ 92 (120)
T cd09011 64 NNFELYFEEEDFDAFLDKLKR-YDNIEYVH 92 (120)
T ss_pred CceEEEEEehhhHHHHHHHHh-cCCcEEec
Confidence 346999999999999999998 55 44443
No 188
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=50.91 E-value=36 Score=24.28 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEE
Q 030972 89 ESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIE 131 (168)
Q Consensus 89 ~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 131 (168)
.|++.+.+.|++.|+++... ..+|...+.++|..-.|..+.
T Consensus 112 rNi~~a~~~L~~~gI~i~a~--DvGG~~gR~v~f~~~tG~v~~ 152 (184)
T PRK13497 112 QNAAFAMQFLRDEGIPVVGS--STGGEHGRKLEYWPVSGRARQ 152 (184)
T ss_pred HHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCeEEE
Confidence 48999999999999999764 334556677888777777743
No 189
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=50.82 E-value=6.6 Score=21.01 Aligned_cols=28 Identities=14% Similarity=0.350 Sum_probs=21.3
Q ss_pred CccceeeeEEEEeCCHHHHHHHHHHccC
Q 030972 9 LHLKSVNHVSLVCRNISESIDFYQNVLG 36 (168)
Q Consensus 9 ~~~~~l~hv~l~v~D~~~a~~FY~~~LG 36 (168)
..+-.++-.++.+.++++..+||...|-
T Consensus 7 ~gigp~De~giP~~~vd~~kDWYktMFk 34 (47)
T PF02208_consen 7 EGIGPVDESGIPLSNVDRPKDWYKTMFK 34 (47)
T ss_pred CCcCccccCCCccccccchhHHHHHHHH
Confidence 3344566677888999999999998653
No 190
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=50.80 E-value=62 Score=20.50 Aligned_cols=25 Identities=8% Similarity=0.351 Sum_probs=21.7
Q ss_pred eEEEEEeCCHHHHHHHHHHcCCeEE
Q 030972 82 NHLSFQCESVGNVEKFLKEMGIKYV 106 (168)
Q Consensus 82 ~hl~~~v~dl~~~~~~l~~~g~~~~ 106 (168)
.++.+.|+|+++..+..+..|.+..
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~ 26 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFN 26 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEc
Confidence 5788999999999999888888765
No 191
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=50.50 E-value=59 Score=20.10 Aligned_cols=31 Identities=10% Similarity=0.220 Sum_probs=22.9
Q ss_pred ceeeeEEEEeC---CHHHHHHHHHHccCCeeeccC
Q 030972 12 KSVNHVSLVCR---NISESIDFYQNVLGFVPIRRP 43 (168)
Q Consensus 12 ~~l~hv~l~v~---D~~~a~~FY~~~LG~~~~~~~ 43 (168)
..+.|+++.|. |+++..+..++ .|.+.....
T Consensus 56 ~~~~h~~~~v~~~~~v~~~~~~l~~-~g~~~~~~~ 89 (117)
T cd07240 56 PGVDALGFEVASEEDLEALAAHLEA-AGVAPEEAS 89 (117)
T ss_pred CCceeEEEEcCCHHHHHHHHHHHHH-cCCceEEcC
Confidence 35789999998 56777777776 788776543
No 192
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=49.85 E-value=39 Score=23.43 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEE
Q 030972 89 ESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMI 130 (168)
Q Consensus 89 ~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~i 130 (168)
.|++.+.+.|++.|+++... ...|...+.++|.--+|..+
T Consensus 107 rNi~~a~~~L~~~gi~i~a~--dvGG~~gR~i~f~~~tG~v~ 146 (157)
T PRK13488 107 RNIESAKETLKKLGIRIVAE--DVGGDYGRTVKFDLKTGKVI 146 (157)
T ss_pred HHHHHHHHHHHHCCCcEEEE--EcCCCCCcEEEEECCCCEEE
Confidence 59999999999999999764 33455557777776666653
No 193
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=49.39 E-value=38 Score=24.52 Aligned_cols=41 Identities=17% Similarity=0.346 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEE
Q 030972 89 ESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIE 131 (168)
Q Consensus 89 ~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 131 (168)
.|++.+.+.|++.|+++... ..+|...+.++|.--+|..+-
T Consensus 115 rNie~a~~~L~~~GI~ivae--DvGG~~gRkI~f~~~tG~v~v 155 (199)
T PRK13491 115 ANAAFARRYLRDEGIRCTAH--SLGGNRARRIRFWPKTGRVQQ 155 (199)
T ss_pred HHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEEEE
Confidence 48999999999999999764 334556677888777777754
No 194
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=47.27 E-value=50 Score=18.63 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=19.6
Q ss_pred eEEEEEeCCHHHHHHHHHHcCCeEE
Q 030972 82 NHLSFQCESVGNVEKFLKEMGIKYV 106 (168)
Q Consensus 82 ~hl~~~v~dl~~~~~~l~~~g~~~~ 106 (168)
..+-+.++|.+.+.+.|+++|+++.
T Consensus 41 ~~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 41 GILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred CEEEEEECCHHHHHHHHHHCCCEEE
Confidence 3445566888899999999998863
No 195
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.10 E-value=34 Score=19.60 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=21.3
Q ss_pred CceEEEEEeC---CHHHHHHHHHHcCCeEE
Q 030972 80 KDNHLSFQCE---SVGNVEKFLKEMGIKYV 106 (168)
Q Consensus 80 ~~~hl~~~v~---dl~~~~~~l~~~g~~~~ 106 (168)
+..++.+++. .++++.+.|+++|+.+.
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYPYV 67 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 4577888886 57788999999998764
No 196
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=46.65 E-value=42 Score=24.56 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEE
Q 030972 89 ESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIE 131 (168)
Q Consensus 89 ~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 131 (168)
.|++.+.+.|++.|+++... ..+|...+.++|..-+|..+-
T Consensus 139 rNi~~a~~~L~~~gI~Iva~--DvGG~~gRki~f~~~tG~v~v 179 (213)
T PRK13493 139 KNVEFVLEYAKREKLNVVAQ--DLGGAQPRKLLFDPQTGQAWV 179 (213)
T ss_pred HHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEEEE
Confidence 48999999999999999764 334555677877766666543
No 197
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=46.47 E-value=44 Score=24.20 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=31.0
Q ss_pred eCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEE
Q 030972 88 CESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMI 130 (168)
Q Consensus 88 v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~i 130 (168)
-.|++.+.+.|++.|+++... ..+|...+.++|.--+|..+
T Consensus 126 ~rNi~~a~~~L~~~gI~iva~--DvGG~~gR~v~f~~~tG~v~ 166 (201)
T PRK13487 126 ERNAEFVRDYLQTERIPIVAE--DLLDIYPRKVYFFPTTGKVL 166 (201)
T ss_pred HHHHHHHHHHHHHcCCcEEEE--ECCCCCCcEEEEECCCCEEE
Confidence 359999999999999999764 33455567788876666664
No 198
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=46.21 E-value=39 Score=20.49 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=16.7
Q ss_pred EEEeCCHHHHHHHHHHccCCeeec
Q 030972 18 SLVCRNISESIDFYQNVLGFVPIR 41 (168)
Q Consensus 18 ~l~v~D~~~a~~FY~~~LG~~~~~ 41 (168)
.+...+-+.+.++|++ |||+...
T Consensus 59 l~v~~~N~~s~~ly~k-lGf~~~~ 81 (86)
T PF08445_consen 59 LYVDADNEASIRLYEK-LGFREIE 81 (86)
T ss_dssp EEEETT-HHHHHHHHH-CT-EEEE
T ss_pred EEEECCCHHHHHHHHH-cCCEEEE
Confidence 3445688899999998 9999775
No 199
>PRK03094 hypothetical protein; Provisional
Probab=41.40 E-value=83 Score=19.20 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=32.9
Q ss_pred EeC-CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEee
Q 030972 87 QCE-SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 87 ~v~-dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
.|+ +|..+.+.|+++|+.++.-.........-.+.+..-|.|...+-..
T Consensus 5 aVE~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d~ 54 (80)
T PRK03094 5 GVEQSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADT 54 (80)
T ss_pred EeecCcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceeccccc
Confidence 344 7899999999999999765332211223446677788888776543
No 200
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=41.29 E-value=58 Score=24.22 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEE
Q 030972 89 ESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMI 130 (168)
Q Consensus 89 ~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~i 130 (168)
.|++.+.+.|++.|+++... ..+|...+.++|.--+|..+
T Consensus 125 RNieaa~~~L~~~gI~Ivae--DvGG~~gRkV~f~~~TG~v~ 164 (233)
T PRK13489 125 RNADFVRRYLALERIRITAE--DLQGVHPRKVAFMPRTGRAM 164 (233)
T ss_pred HHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEEE
Confidence 48999999999999999764 33455567787776666654
No 201
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=40.50 E-value=38 Score=20.96 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=22.5
Q ss_pred CCceEEEEEeC---CHHHHHHHHHHcCCeEEee
Q 030972 79 PKDNHLSFQCE---SVGNVEKFLKEMGIKYVRA 108 (168)
Q Consensus 79 ~~~~hl~~~v~---dl~~~~~~l~~~g~~~~~~ 108 (168)
.+...+++.++ +++.+.++|++.|+.+.+.
T Consensus 49 ~a~vlvgi~v~~~~~~~~l~~~L~~~gy~~~dl 81 (91)
T PF00585_consen 49 FARVLVGIEVPDAEDLEELIERLKALGYPYEDL 81 (91)
T ss_dssp CSEEEEEEE-SSTHHHHHHHHHHTSSS-EEECT
T ss_pred eeeEEEEEEeCCHHHHHHHHHHHHHcCCCeEEC
Confidence 46688899987 4677999999999998753
No 202
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=39.42 E-value=26 Score=17.22 Aligned_cols=22 Identities=14% Similarity=0.407 Sum_probs=15.8
Q ss_pred EEEEeCCHHHHHHHHHHccCCe
Q 030972 17 VSLVCRNISESIDFYQNVLGFV 38 (168)
Q Consensus 17 v~l~v~D~~~a~~FY~~~LG~~ 38 (168)
+.....|.++|+.+|++.|.+.
T Consensus 8 ~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 8 IYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhc
Confidence 3344678999999999987553
No 203
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=37.28 E-value=47 Score=22.50 Aligned_cols=28 Identities=25% Similarity=0.521 Sum_probs=21.9
Q ss_pred eeEEEEeC-CHHHHHHHHHHccCCeeeccC
Q 030972 15 NHVSLVCR-NISESIDFYQNVLGFVPIRRP 43 (168)
Q Consensus 15 ~hv~l~v~-D~~~a~~FY~~~LG~~~~~~~ 43 (168)
..+.|.|. +-+.|++||++ +||......
T Consensus 127 ~~~~L~V~~~N~~Ai~lY~~-~GF~~~~~~ 155 (177)
T COG0456 127 DKIVLEVRESNEAAIGLYRK-LGFEVVKIR 155 (177)
T ss_pred ceEEEEEecCChHHHHHHHH-cCCEEEeee
Confidence 56677764 66699999998 999987653
No 204
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=36.28 E-value=44 Score=22.06 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=20.4
Q ss_pred eEEEEEeCCHHHHHHHHHHcCCeEE
Q 030972 82 NHLSFQCESVGNVEKFLKEMGIKYV 106 (168)
Q Consensus 82 ~hl~~~v~dl~~~~~~l~~~g~~~~ 106 (168)
.|+-..-+|++++.+.|+++|..+.
T Consensus 103 DhiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 103 DHILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred ceEEEehhhHHHHHHHHHHcCCccc
Confidence 4666666799999999999998763
No 205
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=35.82 E-value=1e+02 Score=18.74 Aligned_cols=47 Identities=26% Similarity=0.270 Sum_probs=31.1
Q ss_pred EeC-CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEE
Q 030972 87 QCE-SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEIC 133 (168)
Q Consensus 87 ~v~-dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 133 (168)
.|+ +|..+.+.|+++|++++.-.........-.+.+..-+.|...+-
T Consensus 5 AVE~~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~ 52 (80)
T PF03698_consen 5 AVEEGLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQ 52 (80)
T ss_pred EecCCchHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCccccccc
Confidence 454 78999999999999998654332112334466667777765553
No 206
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=35.01 E-value=1.2e+02 Score=19.27 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCE--EEEEe
Q 030972 89 ESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFM--IEICD 134 (168)
Q Consensus 89 ~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~--iel~~ 134 (168)
.+.+.+.++|++.++-.........+.....++.++..|.. +|+.-
T Consensus 36 ~~~~~i~~~L~~~nI~~iA~~~~~~~~~~~y~s~~~~~~~~fL~El~~ 83 (114)
T PF09066_consen 36 PSPDAIEEKLQANNIFTIASGKVDNGQKFFYFSAKTTNGIWFLVELTI 83 (114)
T ss_dssp --HHHHHHHHHCTT-EEEEEEECTT-EEEEEEEEEBTTS-EEEEEEEE
T ss_pred CcHHHHHHHHHHCCEEEEecCCCCccccEEEEEEEcCCCcEEEEEEEE
Confidence 48899999999999998766444333444344445666554 45543
No 207
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=34.54 E-value=60 Score=21.54 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=22.4
Q ss_pred eeeeEEEEe-CCHHHHHHHHHHccCCeeeccC
Q 030972 13 SVNHVSLVC-RNISESIDFYQNVLGFVPIRRP 43 (168)
Q Consensus 13 ~l~hv~l~v-~D~~~a~~FY~~~LG~~~~~~~ 43 (168)
+++.+.+.| .+-+.+.+||++ +||......
T Consensus 112 ~~~~i~l~v~~~N~~a~~~y~k-~GF~~~g~~ 142 (162)
T PRK10140 112 RVDRIELTVFVDNAPAIKVYKK-YGFEIEGTG 142 (162)
T ss_pred CccEEEEEEEcCCHHHHHHHHH-CCCEEEeec
Confidence 456666665 566778999997 999987753
No 208
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=34.14 E-value=82 Score=17.03 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=15.4
Q ss_pred EEEEEEECCCCCEEEEEeeC
Q 030972 117 VEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 117 ~~~~~~~DPdG~~iel~~~~ 136 (168)
.-...+.||||..+.+....
T Consensus 28 ~GsY~y~~pdG~~~~V~Y~A 47 (52)
T PF00379_consen 28 RGSYSYIDPDGQTRTVTYVA 47 (52)
T ss_pred EEEEEEECCCCCEEEEEEEC
Confidence 34478899999998887644
No 209
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=33.11 E-value=1.4e+02 Score=19.31 Aligned_cols=48 Identities=17% Similarity=0.021 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeC
Q 030972 89 ESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 89 ~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
.++.+.+++|+++|.--..........+...+...|++|...+-....
T Consensus 24 k~f~~~~~~l~~~G~V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~~M~ 71 (109)
T PF06923_consen 24 KNFNKAYKELRKKGRVGIGRSKGRFRPGVIVLLAVDEDGRIVDAEIMK 71 (109)
T ss_pred HHHHHHHHHHHhCCcEEEeeecCcccCCeEEEEEECCCCcEEEEEEEe
Confidence 456778899999984433322222233455577789999998876654
No 210
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=33.04 E-value=60 Score=18.19 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=13.5
Q ss_pred EEEEECCCCCEEEEEeeCC
Q 030972 119 QLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 119 ~~~~~DPdG~~iel~~~~~ 137 (168)
.|.|+|++|+.+.+.-.+.
T Consensus 11 ~F~FYDen~~lVrv~vrD~ 29 (54)
T PF12142_consen 11 SFLFYDENGQLVRVKVRDV 29 (54)
T ss_dssp EEEEE-TTS-EEEEEGGGH
T ss_pred eeEEECCCCCEEEEEhhhc
Confidence 4789999999999876553
No 211
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=32.97 E-value=41 Score=21.12 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=16.3
Q ss_pred eEEEEEeC-CHHHHHHHHHHcCCeEEee
Q 030972 82 NHLSFQCE-SVGNVEKFLKEMGIKYVRA 108 (168)
Q Consensus 82 ~hl~~~v~-dl~~~~~~l~~~g~~~~~~ 108 (168)
+|+.|... +++.+.+.+.+.|..+...
T Consensus 28 h~~~f~~~~~~~~f~~~~~~~g~~v~~~ 55 (104)
T PF06877_consen 28 HWFYFEDEEDAEKFAEELEKLGYEVESA 55 (104)
T ss_dssp EEEEES-HHHHHHHHHHHHHHS---B--
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCEEEEe
Confidence 45555543 7889999999999997654
No 212
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=32.93 E-value=1e+02 Score=21.61 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEE
Q 030972 89 ESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMI 130 (168)
Q Consensus 89 ~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~i 130 (168)
.|.+.+.+.|++.|++++... .+|...+.++|.--+|-.+
T Consensus 114 rNv~~~~~~L~~~~IpilaeD--~Gg~~gR~i~F~p~tG~v~ 153 (164)
T COG1871 114 RNVEFAKEFLKDEGIPILAED--TGGDSGRTIEFNPSTGRVR 153 (164)
T ss_pred HHHHHHHHHHHHcCCcEEEhh--hCCCCCcEEEEecCCCcEE
Confidence 589999999999999997653 3444557788877777654
No 213
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=32.59 E-value=67 Score=18.41 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=17.2
Q ss_pred eeeeEEEEe-CCHHHHHHHHHHccCCe
Q 030972 13 SVNHVSLVC-RNISESIDFYQNVLGFV 38 (168)
Q Consensus 13 ~l~hv~l~v-~D~~~a~~FY~~~LG~~ 38 (168)
++..+.+.+ .+-..+..||++ +||+
T Consensus 58 g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 58 GIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp TESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred CccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 355565554 556668999997 8874
No 214
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=31.11 E-value=1.5e+02 Score=19.11 Aligned_cols=21 Identities=5% Similarity=0.369 Sum_probs=18.0
Q ss_pred EEEEEEECCCCCEEEEEeeCC
Q 030972 117 VEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 117 ~~~~~~~DPdG~~iel~~~~~ 137 (168)
.+++|+.+|...++...++.+
T Consensus 40 nYSIfLde~~n~lFgy~E~~d 60 (105)
T COG3254 40 NYSIFLDEEENLLFGYWEYED 60 (105)
T ss_pred eeEEEecCCcccEEEEEEEcC
Confidence 367999999999999999873
No 215
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=31.04 E-value=59 Score=18.84 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=15.1
Q ss_pred eEEEEeCCHHHHHHHHHHccCCee
Q 030972 16 HVSLVCRNISESIDFYQNVLGFVP 39 (168)
Q Consensus 16 hv~l~v~D~~~a~~FY~~~LG~~~ 39 (168)
++.+.+ -+.+..||+. +||++
T Consensus 59 ~i~l~~--~~~~~~fY~~-~GF~~ 79 (79)
T PF13508_consen 59 KIFLFT--NPAAIKFYEK-LGFEE 79 (79)
T ss_dssp EEEEEE--EHHHHHHHHH-TTEEE
T ss_pred cEEEEE--cHHHHHHHHH-CcCCC
Confidence 344444 3689999998 99874
No 216
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=30.73 E-value=1.6e+02 Score=22.23 Aligned_cols=35 Identities=31% Similarity=0.589 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEE
Q 030972 91 VGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMI 130 (168)
Q Consensus 91 l~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~i 130 (168)
.+++.+.++++|+++... .....++|+.||+++.+
T Consensus 150 ~~~i~k~wk~rgi~F~~~-----k~slISV~~h~~d~~~l 184 (250)
T PF14133_consen 150 AEKIQKYWKERGIKFNND-----KASLISVFLHDPDDNSL 184 (250)
T ss_pred HHHHHHHHHHcCceeCCC-----ceEEEEEEEEcCCCCeE
Confidence 456778889999999221 12345677777776654
No 217
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=30.63 E-value=2e+02 Score=20.47 Aligned_cols=79 Identities=11% Similarity=0.212 Sum_probs=48.5
Q ss_pred eeeeEEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceEEEEEeCCHH
Q 030972 13 SVNHVSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNHLSFQCESVG 92 (168)
Q Consensus 13 ~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hl~~~v~dl~ 92 (168)
...-+.+.+.|.+++..-+.. |||.......- .... +..++..+++=.... -+.+.-|...++|-.
T Consensus 77 ~r~E~E~~v~D~~~~~~il~~-LGF~~~~~VkK--~R~i-Y~~~~~~i~lD~Veg----------LG~F~EIE~~~~d~~ 142 (178)
T COG1437 77 TREEIEIEVSDVEKALEILKR-LGFKEVAVVKK--TREI-YKVGNVTIELDAVEG----------LGDFLEIEVMVDDEN 142 (178)
T ss_pred ceeeEEEEeCCHHHHHHHHHH-cCCceeeEEEE--EEEE-EeeCCEEEEEecccC----------CcccEEEEEecCCch
Confidence 355678888999999999998 99997764321 0122 233444443322221 234566666666433
Q ss_pred -------HHHHHHHHcCCeE
Q 030972 93 -------NVEKFLKEMGIKY 105 (168)
Q Consensus 93 -------~~~~~l~~~g~~~ 105 (168)
.+.+.+++.|++.
T Consensus 143 e~~~~~~~~~~i~~~lGl~~ 162 (178)
T COG1437 143 EIDGAKEEIEEIARQLGLKE 162 (178)
T ss_pred hhHHHHHHHHHHHHHhCCCh
Confidence 3678888888863
No 218
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=30.48 E-value=1.1e+02 Score=17.80 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=20.0
Q ss_pred eEEEEEe--CCHHHHHHHHHHcCCeEEe
Q 030972 82 NHLSFQC--ESVGNVEKFLKEMGIKYVR 107 (168)
Q Consensus 82 ~hl~~~v--~dl~~~~~~l~~~g~~~~~ 107 (168)
--+++.+ +|.+.+.+.|++.|+.+..
T Consensus 41 CG~al~~~~~d~~~i~~~l~~~~i~~~~ 68 (73)
T PF11823_consen 41 CGLALRFEPEDLEKIKEILEENGIEYEG 68 (73)
T ss_pred CCEEEEEChhhHHHHHHHHHHCCCCeeE
Confidence 3445554 5999999999999998753
No 219
>CHL00193 ycf35 Ycf35; Provisional
Probab=30.28 E-value=1.7e+02 Score=19.53 Aligned_cols=54 Identities=11% Similarity=0.184 Sum_probs=33.6
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeEEeeeeee---CCee-EEEEEEECCCCCEEEEEeeC
Q 030972 83 HLSFQCESVGNVEKFLKEMGIKYVRALVEE---GGIL-VEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 83 hl~~~v~dl~~~~~~l~~~g~~~~~~~~~~---~g~~-~~~~~~~DPdG~~iel~~~~ 136 (168)
.|--.+.|++.+.+.|.+.|+.....+... .|.. .-.+.+.-++|+-|.|.+..
T Consensus 6 ~ikT~i~d~~~L~~AL~dLg~~~~~~~~~vrgy~gq~~~a~lvi~~~~~~diGf~~n~ 63 (128)
T CHL00193 6 KIKTSIQNLNLLKKALNDLNIEWKKENQVIKGYNGQTHNADLVIKQSNNYDIGFVWNG 63 (128)
T ss_pred cceeEEcCHHHHHHHHHHcCCCceeCCceeeccCCCeEEEEEEEEcCCCCceeEeeCC
Confidence 344456799999999999999987643321 1221 12244455566666666644
No 220
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.97 E-value=2e+02 Score=20.32 Aligned_cols=86 Identities=8% Similarity=0.018 Sum_probs=48.3
Q ss_pred CccceeeeEEEEeCCHHHHHHHHHHccCCeeeccCCC-CCcceeEEec------CCcEEEEeecCCCCCCCCCCCCCCCc
Q 030972 9 LHLKSVNHVSLVCRNISESIDFYQNVLGFVPIRRPGS-FNFDGAWLFG------HGIGIHLLQSENPDSLPKKSVINPKD 81 (168)
Q Consensus 9 ~~~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~-~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (168)
+.-..++|+.|.|.+...+..|-..++.+-..-...- .+...+.+.. ....+.+++-+-+.... ....|-
T Consensus 35 lt~~~~DHIaLRvh~~qtAk~wr~~~lqcG~~lS~n~iNGRpI~li~l~~Pl~v~~w~id~iELP~P~~K~---YP~egW 111 (185)
T COG3102 35 LTQYTADHIALRVHQEQTAKRWRRGLLQCGELLSENLINGRPICLIKLHQPLQVAHWQIDIIELPYPKNKR---YPHEGW 111 (185)
T ss_pred ccccccceeEEEeCcHHHHHHHHHHHHHHHHHhhhhhcCCceEEEEEcCCcceecceEEEEEEccCCcCCC---CCCcCc
Confidence 4446789999999999988887766544322111100 1112222222 23456666665554322 224578
Q ss_pred eEEEEEeC-CHHHHHHH
Q 030972 82 NHLSFQCE-SVGNVEKF 97 (168)
Q Consensus 82 ~hl~~~v~-dl~~~~~~ 97 (168)
-|+.|-.+ +-+.+..+
T Consensus 112 EHIEiVlP~~peel~~~ 128 (185)
T COG3102 112 EHIEIVLPGDPEELNAR 128 (185)
T ss_pred eeEEEEcCCChHHHHHH
Confidence 89999887 55555443
No 221
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=29.33 E-value=1.1e+02 Score=17.05 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeC
Q 030972 90 SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 90 dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
++++...+...+|-.+... ...| . +-..+|||..+-|++..
T Consensus 5 ~ls~~ea~~l~~Gr~l~~~--~~~g--~--~aa~~pdG~lvAL~~~~ 45 (56)
T PF09142_consen 5 ELSAEEARDLRHGRRLPAA--GPPG--P--VAAFAPDGRLVALLEER 45 (56)
T ss_dssp E--HHHHHHHHTT---B-------S-----EEEE-TTS-EEEEEEEE
T ss_pred ECCHHHHHHHhCCCccCCC--CCCc--e--EEEECCCCcEEEEEEcc
Confidence 4556666667778777433 2222 2 55779999999999764
No 222
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=29.01 E-value=1.6e+02 Score=20.15 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=34.2
Q ss_pred CCceEEEEEeCC--HH-HHHHHHHHcCCeEEeeee-eeCCeeEEEEEEECC--CCCEEEEE
Q 030972 79 PKDNHLSFQCES--VG-NVEKFLKEMGIKYVRALV-EEGGILVEQLFFHDP--DGFMIEIC 133 (168)
Q Consensus 79 ~~~~hl~~~v~d--l~-~~~~~l~~~g~~~~~~~~-~~~g~~~~~~~~~DP--dG~~iel~ 133 (168)
++..-|.+.-+. +- .+.+.|+.+|+.+.+... ..........|..|+ ++++..|.
T Consensus 56 Pa~tt~~l~q~~d~Fg~aL~~aLr~~GYaVvtd~k~~~~~~~v~L~Yvid~~~g~~LyRls 116 (145)
T PRK13835 56 PGTTTIKLKKDTSPFGQALEAALKGWGYAVVTDQKTDKGPKPVELAYVVDSFDGQVLARLS 116 (145)
T ss_pred CCceEEEEeecCcHHHHHHHHHHHhcCeEEeeccccccccCccceEEEEecCCCcEEEEEE
Confidence 344666666553 22 457889999999987543 211224455788887 55666666
No 223
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=28.60 E-value=79 Score=20.85 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=21.3
Q ss_pred eeeeEEEE-eCCHHHHHHHHHHccCCeeeccC
Q 030972 13 SVNHVSLV-CRNISESIDFYQNVLGFVPIRRP 43 (168)
Q Consensus 13 ~l~hv~l~-v~D~~~a~~FY~~~LG~~~~~~~ 43 (168)
++..+.+. ..+=.++++||++ |||+.....
T Consensus 110 ~~~~i~~~v~~~N~~~i~~~~~-~GF~~~g~~ 140 (155)
T PF13420_consen 110 GIHKIYLEVFSSNEKAINFYKK-LGFEEEGEL 140 (155)
T ss_dssp T-CEEEEEEETT-HHHHHHHHH-TTEEEEEEE
T ss_pred CeEEEEEEEecCCHHHHHHHHh-CCCEEEEEE
Confidence 44555554 4678899999998 999988764
No 224
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=28.10 E-value=73 Score=23.02 Aligned_cols=44 Identities=9% Similarity=0.013 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEE
Q 030972 90 SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEIC 133 (168)
Q Consensus 90 dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 133 (168)
|++.+.++|+.+|..............+......+|+|..--++
T Consensus 32 d~~~A~~~lr~~g~~~a~kk~~r~~~eG~i~~~i~~~~~~~~lv 75 (198)
T PRK12332 32 DMEKAIEWLREKGLAKAAKKAGRVAAEGLVGSYIHTGGRIGVLV 75 (198)
T ss_pred CHHHHHHHHHHhhhhHHHHhccccccCceEEEEEecCCCEEEEE
Confidence 89999999999998765443332222223344445666654444
No 225
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=27.95 E-value=68 Score=24.83 Aligned_cols=29 Identities=17% Similarity=0.183 Sum_probs=21.5
Q ss_pred ceeeeEEEEe------CCHHHHHHHHHHccCCeeec
Q 030972 12 KSVNHVSLVC------RNISESIDFYQNVLGFVPIR 41 (168)
Q Consensus 12 ~~l~hv~l~v------~D~~~a~~FY~~~LG~~~~~ 41 (168)
.+++|++..| .|+++..++.++ .|++...
T Consensus 183 ~~~NH~T~~v~~l~~~~dI~~v~~~l~~-~G~~~n~ 217 (302)
T PF07063_consen 183 YHINHFTPRVNRLKKFLDIDAVNAFLKE-RGIPMND 217 (302)
T ss_dssp CS-SEEEEETTT-TT-S-HHHHHHHHHH-TT--B--
T ss_pred cccceeeceeecccccccHHHHHHHHHH-cCCCccc
Confidence 3689999999 999999999998 9999884
No 226
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=27.25 E-value=1.9e+02 Score=19.07 Aligned_cols=49 Identities=10% Similarity=-0.135 Sum_probs=31.9
Q ss_pred eCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeC
Q 030972 88 CESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 88 v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
+.++.+.+..|+++|---..........+...+...|.+|...+-....
T Consensus 24 ik~Fn~~~~~L~~~G~V~iGr~~grf~~g~IvllaiD~~~~I~d~~~M~ 72 (118)
T PRK10234 24 ISRFNRAFDTLCQQGRVGVGRSSGRFKPRVVVALALDEQQRVVDTLFMK 72 (118)
T ss_pred HHHHHHHHHHHHhcCceEEecccCccCCCeEEEEEECCCCcEEeeEEEc
Confidence 3466778899999986333222222223445578889999998876655
No 227
>PRK10314 putative acyltransferase; Provisional
Probab=27.07 E-value=79 Score=21.41 Aligned_cols=23 Identities=35% Similarity=0.703 Sum_probs=16.6
Q ss_pred EEEEeCCHHHHHHHHHHccCCeeecc
Q 030972 17 VSLVCRNISESIDFYQNVLGFVPIRR 42 (168)
Q Consensus 17 v~l~v~D~~~a~~FY~~~LG~~~~~~ 42 (168)
+.+.+ -..+..||++ +||.....
T Consensus 112 i~L~a--~~~a~~fY~k-~GF~~~g~ 134 (153)
T PRK10314 112 VYLGA--QAHLQNFYQS-FGFIPVTE 134 (153)
T ss_pred EEEeh--HHHHHHHHHH-CCCEECCC
Confidence 44444 3567899998 99998764
No 228
>PF11633 SUD-M: Single-stranded poly(A) binding domain; InterPro: IPR024375 This domain identifies non-structural protein 3 (Nsp3). It is found in human SARS coronavirus polyprotein 1a and 1ab, and in related coronavirus polyproteins [].; PDB: 2KQV_A 2W2G_A 2WCT_D 2JZE_A 2JZF_A 2RNK_A 2JZD_A.
Probab=26.62 E-value=1.6e+02 Score=19.93 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=24.0
Q ss_pred eEEEEEeCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEEC
Q 030972 82 NHLSFQCESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHD 124 (168)
Q Consensus 82 ~hl~~~v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~D 124 (168)
..+++-|-|..+..+-|+.+|+.+.++....+|. .+|++.
T Consensus 36 g~~~pvc~D~~A~~k~lkr~gv~~~egl~t~~G~---~fY~Ys 75 (142)
T PF11633_consen 36 GLLCPVCIDYPAFCKTLKRKGVDPKEGLQTVDGV---QFYFYS 75 (142)
T ss_dssp T-EEEEETT-HHHHHHHHHTTS---SEEEES-SS---EEEEE-
T ss_pred CcEEEEEeccHHHHHHHhccCcccccceEEecce---EEEEEe
Confidence 4567777888999999999999998776555442 255543
No 229
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.04 E-value=1.2e+02 Score=16.59 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=17.7
Q ss_pred eEEEEEeCC---HHHHHHHHHHcCCeEE
Q 030972 82 NHLSFQCES---VGNVEKFLKEMGIKYV 106 (168)
Q Consensus 82 ~hl~~~v~d---l~~~~~~l~~~g~~~~ 106 (168)
.++.+.+.+ ++.+.+.|++.|+++.
T Consensus 45 ~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 45 VELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 445555554 5588999999998764
No 230
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.92 E-value=75 Score=17.86 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHcCCeE
Q 030972 89 ESVGNVEKFLKEMGIKY 105 (168)
Q Consensus 89 ~dl~~~~~~l~~~g~~~ 105 (168)
++.+.+.+.|+++|+++
T Consensus 53 ~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 53 EDRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHHcCCcC
Confidence 36789999999999853
No 231
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=25.38 E-value=2.1e+02 Score=18.99 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=35.8
Q ss_pred CCceEEEEEeCCHHHHHHHHHHcCCeE--Eeeeee----eCCe-------------eEEEEEEECCCCCEEEEEe
Q 030972 79 PKDNHLSFQCESVGNVEKFLKEMGIKY--VRALVE----EGGI-------------LVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 79 ~~~~hl~~~v~dl~~~~~~l~~~g~~~--~~~~~~----~~g~-------------~~~~~~~~DPdG~~iel~~ 134 (168)
.+..-+++.+++.+++.+.+++.|+.+ ...+.. ..|. .....|+.||+|..+....
T Consensus 63 ~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 63 AGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFD 137 (154)
T ss_pred CCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEc
Confidence 356778888888888888888877653 222110 0010 0145689999998888864
No 232
>PHA02754 hypothetical protein; Provisional
Probab=25.25 E-value=1.4e+02 Score=16.95 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCeEEeeeee-eCCeeEEEEEEECCCCCEEEEEeeC
Q 030972 92 GNVEKFLKEMGIKYVRALVE-EGGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 92 ~~~~~~l~~~g~~~~~~~~~-~~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
.++.+.|.++|+=+-....- ..|.. ..+.-.||..+|+.+.+
T Consensus 21 RelkD~LSe~GiYi~RIkai~~SGdk---IVVi~aD~I~i~ls~Te 63 (67)
T PHA02754 21 RELKDILSEAGIYIDRIKAITTSGDK---IVVITADAIKIELSETE 63 (67)
T ss_pred HHHHHHHhhCceEEEEEEEEEecCCE---EEEEEcceEEEEEEeee
Confidence 34566777788866544332 23322 45556899999998864
No 233
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=24.83 E-value=1.3e+02 Score=21.01 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=24.9
Q ss_pred CccceeeeEEEEeC-CHHHHHHHHHHccCCeeeccC
Q 030972 9 LHLKSVNHVSLVCR-NISESIDFYQNVLGFVPIRRP 43 (168)
Q Consensus 9 ~~~~~l~hv~l~v~-D~~~a~~FY~~~LG~~~~~~~ 43 (168)
|...+-..|.|.+. .-..|.++|+. |||....+.
T Consensus 113 m~~~g~~eVvLeTe~~n~~A~~LY~s-LGF~r~~r~ 147 (165)
T KOG3139|consen 113 MRSRGYSEVVLETEVTNLSALRLYES-LGFKRDKRL 147 (165)
T ss_pred HHHCCCcEEEEeccccchHHHHHHHh-cCceEecce
Confidence 33456677888875 45677889998 999977654
No 234
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=24.13 E-value=1.2e+02 Score=19.87 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=21.1
Q ss_pred eeeeEEEEe-CCHHHHHHHHHHccCCeeecc
Q 030972 13 SVNHVSLVC-RNISESIDFYQNVLGFVPIRR 42 (168)
Q Consensus 13 ~l~hv~l~v-~D~~~a~~FY~~~LG~~~~~~ 42 (168)
++.++.+.| .+-..+.+||++ +||+....
T Consensus 96 ~~~~~~~~~~~~N~~a~~~y~k-~Gf~~~~~ 125 (146)
T PRK09491 96 GVATLWLEVRASNAAAIALYES-LGFNEVTI 125 (146)
T ss_pred CCcEEEEEEccCCHHHHHHHHH-cCCEEeee
Confidence 455566655 455889999998 99987653
No 235
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=24.05 E-value=2.4e+02 Score=20.76 Aligned_cols=43 Identities=16% Similarity=0.054 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEe
Q 030972 92 GNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 92 ~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 134 (168)
+.+.+.|++.|+.+........+.....+.+.|++|....+..
T Consensus 66 ~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 108 (279)
T cd01942 66 RLYLEELREEGVDTSHVRVVDEDSTGVAFILTDGDDNQIAYFY 108 (279)
T ss_pred HHHHHHHHHcCCCccceEEcCCCCcceEEEEEcCCCCEEEEec
Confidence 4788999999998754422222222345667788888877644
No 236
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=23.77 E-value=3.2e+02 Score=20.59 Aligned_cols=47 Identities=19% Similarity=0.238 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHcCCeEEeeeeeeC----CeeEEEEEEECCCCCEEEEEeeC
Q 030972 90 SVGNVEKFLKEMGIKYVRALVEEG----GILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 90 dl~~~~~~l~~~g~~~~~~~~~~~----g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
.++.+.+.+++.|+.++.+..... +..+.++++.+|+|..+......
T Consensus 78 ~~~~l~~~A~~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~ 128 (294)
T cd07582 78 ETEALGEKAKELNVYIAANAYERDPDFPGLYFNTAFIIDPSGEIILRYRKM 128 (294)
T ss_pred HHHHHHHHHHHcCEEEEEeeeeecCCCCCcEEEEEEEECCCCcEEEEEeee
Confidence 456777788888888766543221 23467789999999988766543
No 237
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=23.41 E-value=96 Score=23.95 Aligned_cols=46 Identities=15% Similarity=0.061 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCC---CCEEEEEee
Q 030972 90 SVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPD---GFMIEICDC 135 (168)
Q Consensus 90 dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPd---G~~iel~~~ 135 (168)
|++.+.++|+.+|+.-......+....+..+...+++ |-.+|+.+.
T Consensus 33 d~EkAie~LR~kG~akA~KKa~R~AaEGli~~~~~~~~~~av~vEvN~E 81 (296)
T COG0264 33 DIEKAIEWLREKGIAKAAKKAGRIAAEGLIAAKVDGDGKKAVLVEVNCE 81 (296)
T ss_pred CHHHHHHHHHHhchHhhhhhcCcchhcceEEEEEcCCCcEEEEEEEecc
Confidence 8999999999999976554443332233446666777 556776654
No 238
>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism]
Probab=23.21 E-value=1.7e+02 Score=22.37 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=30.4
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeC
Q 030972 78 NPKDNHLSFQCESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCD 136 (168)
Q Consensus 78 ~~~~~hl~~~v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 136 (168)
..|..|+.+.|+|++. ..+...|-.+...+.-..+....++-..+++-.++.+.+..
T Consensus 152 s~GnPH~V~~Vddv~~--~~~~~~g~~l~~h~~Fp~~vNV~F~~v~~~~~i~vrv~ERG 208 (272)
T COG0253 152 SMGNPHLVIFVDDVET--ANLEELGPLLESHELFPEGVNVGFVQVLSRDAIRLRVYERG 208 (272)
T ss_pred ecCCCeEEEEeCCccc--chhhhhhhhhhcCccCCCceEEEEEEeCCCCcEEEEEeecC
Confidence 4588999999997776 33333333333322222233332333345566666666543
No 239
>PRK11191 RNase E inhibitor protein; Provisional
Probab=23.21 E-value=1.9e+02 Score=19.62 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=19.8
Q ss_pred eEEEEEeC-CHHHHHHHHHHcCCeEEe
Q 030972 82 NHLSFQCE-SVGNVEKFLKEMGIKYVR 107 (168)
Q Consensus 82 ~hl~~~v~-dl~~~~~~l~~~g~~~~~ 107 (168)
+|++|.-. +++++...+.+.|+.+..
T Consensus 36 H~~~f~d~~~lek~a~~a~klGyeV~~ 62 (138)
T PRK11191 36 HHFSADDFDKLEKAAVEAFKLGYEVTD 62 (138)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCeeec
Confidence 67666643 677888888999999864
No 240
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=23.00 E-value=1.3e+02 Score=20.63 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=22.5
Q ss_pred eeeeEEEEeC-CHHHHHHHHHHccCCeeeccC
Q 030972 13 SVNHVSLVCR-NISESIDFYQNVLGFVPIRRP 43 (168)
Q Consensus 13 ~l~hv~l~v~-D~~~a~~FY~~~LG~~~~~~~ 43 (168)
+++.|.+.|. +-.++.+||++ +||......
T Consensus 116 ~~~rv~~~v~~~N~~s~~~yek-~GF~~~~~~ 146 (186)
T PRK15130 116 NLYKLYLIVDKENEKAIHIYRK-LGFEVEGEL 146 (186)
T ss_pred CceEEEEEEccCCHHHHHHHHH-CCCEEEEEE
Confidence 4566777663 56699999998 999987653
No 241
>PRK14707 hypothetical protein; Provisional
Probab=22.98 E-value=1.7e+02 Score=29.42 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHcCCeEEeeeeee----CCeeEEEEEEECCCCCEEEEEe
Q 030972 90 SVGNVEKFLKEMGIKYVRALVEE----GGILVEQLFFHDPDGFMIEICD 134 (168)
Q Consensus 90 dl~~~~~~l~~~g~~~~~~~~~~----~g~~~~~~~~~DPdG~~iel~~ 134 (168)
.+..+...|.++|+..+.-.-.. .+..+..+.+.||+|+.|||--
T Consensus 2357 ~~r~Il~aL~~qGy~~vkvkN~F~~~~~~YkGINvtL~~pdG~~FEIQF 2405 (2710)
T PRK14707 2357 GLRAVLAALDDQGHARVKLTNQFTEYSPSFKAINLTLRSPEGALWEIQF 2405 (2710)
T ss_pred HHHHHHHHHHHcCCeEEEEeecccCCCCCccceEEEEEcCCCcEEEEEe
Confidence 35567788999999987653222 1123455678999999999863
No 242
>PF11782 DUF3319: Protein of unknown function (DUF3319); InterPro: IPR021753 This is a family of short bacterial proteins, a few of which are annotated as being minor tail protein. Otherwise the function is unknown.
Probab=22.29 E-value=64 Score=20.03 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHHccC
Q 030972 22 RNISESIDFYQNVLG 36 (168)
Q Consensus 22 ~D~~~a~~FY~~~LG 36 (168)
.-++++++||++ +|
T Consensus 35 ~~vKksIdww~d-t~ 48 (88)
T PF11782_consen 35 FEVKKSIDWWCD-TG 48 (88)
T ss_pred HHHHHHHHHHHh-cc
Confidence 578999999999 77
No 243
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=21.80 E-value=83 Score=26.50 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.2
Q ss_pred eeEEEEeCCHHHHHHHHHHccCCeee
Q 030972 15 NHVSLVCRNISESIDFYQNVLGFVPI 40 (168)
Q Consensus 15 ~hv~l~v~D~~~a~~FY~~~LG~~~~ 40 (168)
.++-|.+.+.+.|.+||++.||....
T Consensus 434 ~~Lplhi~~t~~Ae~~y~~~~G~rll 459 (572)
T KOG1249|consen 434 EQLPLHIGPTEEAEAFYEKHLGTRLL 459 (572)
T ss_pred CcceeeecchhhHHHHHHHhcCCeee
Confidence 46677888999999999999999987
No 244
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=21.78 E-value=3.4e+02 Score=20.16 Aligned_cols=45 Identities=9% Similarity=0.036 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEee
Q 030972 91 VGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 91 l~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
-+.+.+.|++.|+................+.+.|++|..-.+...
T Consensus 65 g~~~~~~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~ 109 (290)
T cd01939 65 FESLLDDFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIVND 109 (290)
T ss_pred HHHHHHHHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEeC
Confidence 456789999999987543222222233457777888876555543
No 245
>PLN02504 nitrilase
Probab=21.77 E-value=4e+02 Score=20.92 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCeEEeeeee-eCCeeEEEEEEECCCCCEEEEEee
Q 030972 91 VGNVEKFLKEMGIKYVRALVE-EGGILVEQLFFHDPDGFMIEICDC 135 (168)
Q Consensus 91 l~~~~~~l~~~g~~~~~~~~~-~~g~~~~~~~~~DPdG~~iel~~~ 135 (168)
++.+.+.+++.|+.++.+... ..+..+.+.++.+|+|..+.....
T Consensus 107 i~~l~~~A~~~~i~iv~G~~e~~~~~~yNsa~~i~~~G~i~~~yrK 152 (346)
T PLN02504 107 VDRLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDPQGQYLGKHRK 152 (346)
T ss_pred HHHHHHHHHHcCCEEEEeeeecCCCceEEEEEEECCCCCEEeEEee
Confidence 677778888889887665333 234456778889999998766543
No 246
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.25 E-value=1.6e+02 Score=23.39 Aligned_cols=89 Identities=11% Similarity=0.201 Sum_probs=44.2
Q ss_pred EEEEeCCHHHHHHHHHHccCCeeeccCCCCCcceeEEecCCcEEEEeecCCCCCCCCCCCCCCCceE------EEEEeCC
Q 030972 17 VSLVCRNISESIDFYQNVLGFVPIRRPGSFNFDGAWLFGHGIGIHLLQSENPDSLPKKSVINPKDNH------LSFQCES 90 (168)
Q Consensus 17 v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~h------l~~~v~d 90 (168)
+++..+++++|.+|=+. +++. ..+ ...+++.. ..........+...++.-.......-...-| +|..+++
T Consensus 36 vava~~s~~~A~~fAq~-~~~~-~~k-~y~syEeL-akd~~vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e 111 (351)
T KOG2741|consen 36 VAVADPSLERAKEFAQR-HNIP-NPK-AYGSYEEL-AKDPEVDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAE 111 (351)
T ss_pred EEEecccHHHHHHHHHh-cCCC-CCc-cccCHHHH-hcCCCcCEEEeCCCCccHHHHHHHHHHcCCcEEecccccCCHHH
Confidence 46677899999999998 8885 111 11111111 1112222222222221000000000001112 3455567
Q ss_pred HHHHHHHHHHcCCeEEeee
Q 030972 91 VGNVEKFLKEMGIKYVRAL 109 (168)
Q Consensus 91 l~~~~~~l~~~g~~~~~~~ 109 (168)
++++++.++++|+.+.++-
T Consensus 112 ~~~iveaA~~rgv~~meg~ 130 (351)
T KOG2741|consen 112 AEEIVEAAEARGVFFMEGL 130 (351)
T ss_pred HHHHHHHHHHcCcEEEeee
Confidence 8889999999999887763
No 247
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=21.07 E-value=83 Score=20.32 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=10.9
Q ss_pred EEEECCCCCEEE
Q 030972 120 LFFHDPDGFMIE 131 (168)
Q Consensus 120 ~~~~DPdG~~ie 131 (168)
+.++|+||+++-
T Consensus 21 ARlyd~dG~Ll~ 32 (112)
T PF13756_consen 21 ARLYDPDGNLLA 32 (112)
T ss_pred EEEECCCCCEEe
Confidence 899999999975
No 248
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=20.97 E-value=97 Score=14.48 Aligned_cols=14 Identities=7% Similarity=0.672 Sum_probs=11.6
Q ss_pred eCCHHHHHHHHHHc
Q 030972 21 CRNISESIDFYQNV 34 (168)
Q Consensus 21 v~D~~~a~~FY~~~ 34 (168)
-.|.+++..||+..
T Consensus 18 ~~d~~~A~~~~~~A 31 (36)
T smart00671 18 KKDLEKALEYYKKA 31 (36)
T ss_pred CcCHHHHHHHHHHH
Confidence 36999999999863
No 249
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=20.59 E-value=1.6e+02 Score=19.29 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=22.5
Q ss_pred eeeeEEEEe-CCHHHHHHHHHHccCCeeeccC
Q 030972 13 SVNHVSLVC-RNISESIDFYQNVLGFVPIRRP 43 (168)
Q Consensus 13 ~l~hv~l~v-~D~~~a~~FY~~~LG~~~~~~~ 43 (168)
+++.+.+.| .+=..+++||++ +||+.....
T Consensus 109 ~~~~i~~~v~~~N~~s~~~y~k-~Gf~~~g~~ 139 (156)
T TIGR03585 109 GLHKLSLEVLEFNNKALKLYEK-FGFEREGVF 139 (156)
T ss_pred CeeEEEEEEeccCHHHHHHHHH-cCCeEeeee
Confidence 456666654 667889999998 999987743
No 250
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.35 E-value=2.1e+02 Score=17.08 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCeEEeeeee--eCCe-eEEEEEEECCCCCE
Q 030972 91 VGNVEKFLKEMGIKYVRALVE--EGGI-LVEQLFFHDPDGFM 129 (168)
Q Consensus 91 l~~~~~~l~~~g~~~~~~~~~--~~g~-~~~~~~~~DPdG~~ 129 (168)
+-++.+-+.+.|+.+...... ..|. ..-.||+ |.+|..
T Consensus 14 L~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~k 54 (75)
T cd04896 14 LYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKK 54 (75)
T ss_pred HHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCc
Confidence 456778888899998877766 5554 3344666 888876
No 251
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.24 E-value=2e+02 Score=16.84 Aligned_cols=38 Identities=21% Similarity=0.403 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCeEEeeeeee--CCeeEEEEEEECCCCC
Q 030972 91 VGNVEKFLKEMGIKYVRALVEE--GGILVEQLFFHDPDGF 128 (168)
Q Consensus 91 l~~~~~~l~~~g~~~~~~~~~~--~g~~~~~~~~~DPdG~ 128 (168)
+..+...|.++|+.+....... .|...-.|++.|++|.
T Consensus 14 fa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~ 53 (76)
T cd04927 14 LHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL 53 (76)
T ss_pred HHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC
Confidence 5567888999999998876543 3444556888888776
No 252
>PRK13577 diaminopimelate epimerase; Provisional
Probab=20.15 E-value=2.2e+02 Score=21.49 Aligned_cols=56 Identities=14% Similarity=0.039 Sum_probs=29.7
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHcCCeEEeeeeeeCCeeEEEEEEECCCCCEEEEEeeCC
Q 030972 78 NPKDNHLSFQCESVGNVEKFLKEMGIKYVRALVEEGGILVEQLFFHDPDGFMIEICDCDN 137 (168)
Q Consensus 78 ~~~~~hl~~~v~dl~~~~~~l~~~g~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 137 (168)
..|..|+-+.|+|++.+. +...|-.+...+....+....++++.|++ .|.+..+++
T Consensus 155 s~G~PH~Vv~V~~~~~~~--~~~~g~~~~~~~~fp~~~Nv~f~~~~~~~--~i~~R~~Er 210 (281)
T PRK13577 155 TIGNPHCVVLLDEISEEL--ARELGPLIETHPRFPNRTNVQFLKVLDRN--TIQIEIWER 210 (281)
T ss_pred ECCCCcEEEEeCCcchhh--HHhhCccccccCCCCCCceEEEEEEccCC--eEEEEEECC
Confidence 368899999999876542 33334444322222223344445555555 555554443
Done!