Query 030973
Match_columns 168
No_of_seqs 169 out of 1188
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 07:20:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11670 antiporter inner memb 100.0 3.4E-28 7.3E-33 193.7 13.8 155 7-167 87-243 (369)
2 KOG3022 Predicted ATPase, nucl 100.0 4E-28 8.8E-33 181.5 12.6 149 18-167 34-185 (300)
3 TIGR03029 EpsG chain length de 99.9 6.1E-27 1.3E-31 180.2 8.6 138 3-151 79-224 (274)
4 TIGR03018 pepcterm_TyrKin exop 99.9 1.2E-26 2.6E-31 171.9 8.1 145 3-153 7-162 (207)
5 COG0489 Mrp ATPases involved i 99.9 7E-26 1.5E-30 173.2 11.7 152 5-164 33-191 (265)
6 TIGR01007 eps_fam capsular exo 99.9 5.6E-26 1.2E-30 167.9 7.8 129 9-150 1-138 (204)
7 PRK11519 tyrosine kinase; Prov 99.9 2.6E-25 5.7E-30 190.4 9.6 135 6-151 505-647 (719)
8 TIGR01005 eps_transp_fam exopo 99.9 4.2E-25 9E-30 190.4 8.4 140 4-154 523-670 (754)
9 PRK09841 cryptic autophosphory 99.9 4.9E-25 1.1E-29 189.0 8.6 137 5-152 509-653 (726)
10 PRK13869 plasmid-partitioning 99.9 1.9E-24 4E-29 174.3 10.3 129 28-159 118-271 (405)
11 TIGR01969 minD_arch cell divis 99.9 1.4E-23 3.1E-28 159.0 11.5 121 32-160 1-129 (251)
12 PRK10037 cell division protein 99.9 6.6E-24 1.4E-28 161.4 9.4 126 31-160 1-138 (250)
13 PHA02519 plasmid partition pro 99.9 8.9E-24 1.9E-28 169.3 10.1 130 28-160 103-255 (387)
14 CHL00175 minD septum-site dete 99.9 4.5E-23 9.7E-28 159.3 12.9 125 27-160 11-147 (281)
15 COG2894 MinD Septum formation 99.9 2.8E-23 6E-28 151.2 10.0 123 31-161 2-135 (272)
16 PRK13705 plasmid-partitioning 99.9 1.4E-23 3E-28 168.4 9.1 131 27-160 102-255 (388)
17 PRK13232 nifH nitrogenase redu 99.9 5.2E-23 1.1E-27 158.4 11.0 118 31-152 1-129 (273)
18 PRK10818 cell division inhibit 99.9 1E-22 2.2E-27 156.4 12.4 122 31-160 2-134 (270)
19 TIGR03371 cellulose_yhjQ cellu 99.9 4.2E-23 9.1E-28 156.2 9.9 127 31-161 1-136 (246)
20 TIGR03453 partition_RepA plasm 99.9 2.8E-23 6.2E-28 166.9 8.6 129 28-159 101-254 (387)
21 TIGR03815 CpaE_hom_Actino heli 99.9 2.4E-22 5.1E-27 158.0 13.4 123 28-161 90-226 (322)
22 PF06564 YhjQ: YhjQ protein; 99.9 3.6E-23 7.8E-28 155.1 8.3 129 31-161 1-139 (243)
23 cd02117 NifH_like This family 99.9 1.7E-22 3.6E-27 150.2 11.6 115 32-151 1-128 (212)
24 COG0455 flhG Antiactivator of 99.9 1.4E-22 3.1E-27 154.2 11.1 125 31-162 2-135 (262)
25 TIGR01968 minD_bact septum sit 99.9 1.9E-22 4E-27 153.7 11.7 121 31-160 1-132 (261)
26 COG1192 Soj ATPases involved i 99.9 8.4E-23 1.8E-27 156.0 9.6 126 31-159 2-139 (259)
27 cd02037 MRP-like MRP (Multiple 99.9 1.9E-22 4.1E-27 144.9 10.2 87 33-159 1-87 (169)
28 PRK13233 nifH nitrogenase redu 99.9 1E-22 2.2E-27 156.8 9.1 118 31-151 2-130 (275)
29 cd02040 NifH NifH gene encodes 99.9 4.3E-22 9.2E-27 152.7 9.7 117 31-151 1-128 (270)
30 PRK13235 nifH nitrogenase redu 99.9 5.3E-22 1.2E-26 152.8 9.5 115 31-152 1-130 (274)
31 PRK13185 chlL protochlorophyll 99.9 9.8E-22 2.1E-26 150.9 10.4 114 31-152 2-130 (270)
32 PRK13236 nitrogenase reductase 99.9 2.4E-21 5.2E-26 150.7 11.2 117 29-150 4-132 (296)
33 TIGR01281 DPOR_bchL light-inde 99.9 2.3E-21 5E-26 148.7 10.6 114 33-152 2-128 (268)
34 PRK13849 putative crown gall t 99.9 7.9E-21 1.7E-25 142.8 11.4 105 31-161 1-105 (231)
35 PHA02518 ParA-like protein; Pr 99.9 6.7E-21 1.5E-25 140.9 10.8 98 32-161 1-98 (211)
36 PRK13230 nitrogenase reductase 99.9 4.6E-21 9.9E-26 148.0 10.3 117 31-151 1-128 (279)
37 cd02032 Bchl_like This family 99.8 1E-20 2.2E-25 145.1 10.9 113 33-153 2-129 (267)
38 TIGR01287 nifH nitrogenase iro 99.8 1.5E-20 3.2E-25 144.8 11.4 115 32-151 1-127 (275)
39 PRK13234 nifH nitrogenase redu 99.8 1.4E-20 3E-25 146.3 10.6 115 30-151 3-131 (295)
40 cd03110 Fer4_NifH_child This p 99.8 4.6E-20 1E-24 133.5 10.1 112 33-160 1-113 (179)
41 CHL00072 chlL photochlorophyll 99.8 5.9E-20 1.3E-24 142.4 11.2 113 34-153 3-129 (290)
42 PRK13231 nitrogenase reductase 99.8 9.3E-21 2E-25 145.1 6.3 115 31-151 2-125 (264)
43 PF09140 MipZ: ATPase MipZ; I 99.8 1.1E-20 2.3E-25 140.8 2.4 111 32-152 1-111 (261)
44 PF01656 CbiA: CobQ/CobB/MinD/ 99.8 2.8E-19 6.2E-24 130.5 8.0 115 34-160 1-115 (195)
45 PF13614 AAA_31: AAA domain; P 99.8 5.6E-20 1.2E-24 130.2 3.4 117 32-156 1-134 (157)
46 cd02036 MinD Bacterial cell di 99.8 8.4E-19 1.8E-23 126.4 9.3 50 33-83 1-50 (179)
47 TIGR02016 BchX chlorophyllide 99.8 1.9E-18 4.1E-23 134.3 10.6 56 32-89 1-56 (296)
48 cd02033 BchX Chlorophyllide re 99.7 3.7E-17 8E-22 128.2 12.0 118 27-151 27-159 (329)
49 PF07015 VirC1: VirC1 protein; 99.7 3.8E-17 8.3E-22 121.2 10.9 98 31-154 1-98 (231)
50 cd03111 CpaE_like This protein 99.7 5.1E-17 1.1E-21 108.2 8.6 42 33-75 1-43 (106)
51 cd02042 ParA ParA and ParB of 99.7 5.2E-17 1.1E-21 107.6 8.4 39 33-72 1-39 (104)
52 cd00550 ArsA_ATPase Oxyanion-t 99.7 1E-17 2.2E-22 127.7 5.2 48 34-83 2-49 (254)
53 cd02035 ArsA ArsA ATPase funct 99.7 2E-17 4.3E-22 123.4 4.5 107 34-151 1-125 (217)
54 cd02038 FleN-like FleN is a me 99.7 1.8E-16 4E-21 110.4 8.9 43 33-76 1-43 (139)
55 COG0003 ArsA Predicted ATPase 99.7 1.6E-16 3.4E-21 124.1 9.4 109 33-150 3-136 (322)
56 COG3640 CooC CO dehydrogenase 99.7 4.7E-16 1E-20 114.7 10.7 116 33-153 2-147 (255)
57 PF02374 ArsA_ATPase: Anion-tr 99.7 6.4E-16 1.4E-20 120.6 9.3 48 34-83 3-50 (305)
58 PF00142 Fer4_NifH: 4Fe-4S iro 99.6 1.2E-14 2.6E-19 109.5 8.7 113 32-149 1-126 (273)
59 cd02034 CooC The accessory pro 99.6 2E-14 4.4E-19 97.1 8.5 106 36-161 3-108 (116)
60 COG1348 NifH Nitrogenase subun 99.6 3.6E-14 7.8E-19 104.6 9.9 114 31-149 1-127 (278)
61 COG1149 MinD superfamily P-loo 99.5 5E-14 1.1E-18 106.0 8.6 53 31-85 1-53 (284)
62 TIGR00064 ftsY signal recognit 99.5 5.5E-13 1.2E-17 102.6 10.4 45 29-75 70-114 (272)
63 COG4963 CpaE Flp pilus assembl 99.5 4.3E-13 9.3E-18 105.3 9.3 130 26-162 99-240 (366)
64 KOG2825 Putative arsenite-tran 99.4 1.6E-13 3.6E-18 102.2 5.8 54 28-83 15-68 (323)
65 PRK13886 conjugal transfer pro 99.4 2.3E-12 5E-17 96.9 10.4 48 31-79 2-49 (241)
66 cd03114 ArgK-like The function 99.4 4.3E-12 9.4E-17 89.3 10.6 37 37-74 4-40 (148)
67 PRK10867 signal recognition pa 99.4 2.2E-12 4.8E-17 104.7 10.1 95 32-151 100-195 (433)
68 TIGR00959 ffh signal recogniti 99.4 5.2E-12 1.1E-16 102.5 9.8 47 31-78 98-145 (428)
69 PRK10416 signal recognition pa 99.3 5.1E-12 1.1E-16 99.2 9.0 44 30-75 113-156 (318)
70 cd03115 SRP The signal recogni 99.3 1.9E-11 4E-16 88.0 10.2 93 34-151 2-94 (173)
71 TIGR01425 SRP54_euk signal rec 99.3 1.9E-11 4.1E-16 98.9 10.1 48 31-80 100-147 (429)
72 PRK13768 GTPase; Provisional 99.3 7.4E-12 1.6E-16 95.5 7.0 41 34-75 4-44 (253)
73 PRK12726 flagellar biosynthesi 99.2 1.7E-10 3.8E-15 91.8 10.7 92 30-151 205-297 (407)
74 PRK11889 flhF flagellar biosyn 99.2 9.3E-11 2E-15 93.7 8.8 92 30-151 240-332 (436)
75 TIGR03499 FlhF flagellar biosy 99.1 1.5E-10 3.3E-15 89.6 7.0 44 30-75 193-238 (282)
76 cd01983 Fer4_NifH The Fer4_Nif 99.1 3.3E-10 7.2E-15 73.0 7.1 33 35-68 2-34 (99)
77 PRK00771 signal recognition pa 99.1 4.6E-10 1E-14 91.4 8.1 46 30-77 94-139 (437)
78 PRK12724 flagellar biosynthesi 99.1 3.8E-10 8.3E-15 90.9 7.3 44 33-77 224-268 (432)
79 PRK05703 flhF flagellar biosyn 99.1 4.6E-10 1E-14 91.4 7.5 43 31-74 221-264 (424)
80 COG0541 Ffh Signal recognition 99.1 5E-10 1.1E-14 89.6 7.4 96 31-151 99-194 (451)
81 PF00448 SRP54: SRP54-type pro 99.1 5.6E-10 1.2E-14 82.1 7.1 95 31-151 1-95 (196)
82 PRK14974 cell division protein 99.0 2.2E-09 4.7E-14 84.8 9.1 43 31-75 140-182 (336)
83 TIGR00347 bioD dethiobiotin sy 99.0 5.1E-10 1.1E-14 80.0 5.0 32 36-68 2-33 (166)
84 PRK13505 formate--tetrahydrofo 99.0 8.4E-10 1.8E-14 90.9 6.4 75 8-86 31-109 (557)
85 PRK14493 putative bifunctional 99.0 2.8E-09 6.1E-14 82.1 8.1 40 31-73 1-40 (274)
86 TIGR00750 lao LAO/AO transport 99.0 1.1E-08 2.5E-13 79.8 11.5 44 29-74 32-75 (300)
87 PRK12727 flagellar biosynthesi 98.9 6.2E-09 1.3E-13 86.1 8.1 44 30-75 349-394 (559)
88 PRK12723 flagellar biosynthesi 98.9 1.1E-08 2.5E-13 82.2 9.4 49 31-80 174-225 (388)
89 KOG0780 Signal recognition par 98.9 9E-09 1.9E-13 81.4 8.0 100 28-152 97-196 (483)
90 COG0552 FtsY Signal recognitio 98.8 1.6E-08 3.4E-13 78.8 5.9 96 30-151 138-233 (340)
91 TIGR00345 arsA arsenite-activa 98.7 5.7E-08 1.2E-12 75.4 8.1 34 48-83 1-34 (284)
92 COG0529 CysC Adenylylsulfate k 98.7 2.7E-08 6E-13 71.0 5.2 108 29-149 20-131 (197)
93 PRK06731 flhF flagellar biosyn 98.7 2.1E-07 4.6E-12 71.5 9.3 42 30-73 74-115 (270)
94 KOG1532 GTPase XAB1, interacts 98.7 1.6E-08 3.5E-13 76.8 3.0 119 31-163 18-139 (366)
95 cd00477 FTHFS Formyltetrahydro 98.6 5E-08 1.1E-12 79.8 5.5 74 9-86 15-92 (524)
96 PRK09435 membrane ATPase/prote 98.6 1.1E-06 2.4E-11 69.5 11.2 106 29-151 54-160 (332)
97 PRK14723 flhF flagellar biosyn 98.5 2.3E-07 4.9E-12 80.0 7.2 45 31-76 185-230 (767)
98 PRK13506 formate--tetrahydrofo 98.5 1.5E-07 3.2E-12 77.7 5.5 54 29-86 52-108 (578)
99 KOG1533 Predicted GTPase [Gene 98.5 1.7E-07 3.8E-12 69.7 5.3 101 37-150 7-107 (290)
100 COG1341 Predicted GTPase or GT 98.5 1E-06 2.2E-11 70.3 9.7 108 28-149 70-181 (398)
101 PF03029 ATP_bind_1: Conserved 98.5 7.1E-09 1.5E-13 78.4 -2.6 39 39-78 3-41 (238)
102 PRK14722 flhF flagellar biosyn 98.5 4.2E-07 9.2E-12 72.8 6.7 45 31-76 137-182 (374)
103 PRK00090 bioD dithiobiotin syn 98.5 1.6E-07 3.5E-12 70.1 3.9 33 34-67 2-34 (222)
104 COG1419 FlhF Flagellar GTP-bin 98.4 5.7E-07 1.2E-11 72.0 5.7 89 30-150 202-292 (407)
105 KOG0635 Adenosine 5'-phosphosu 98.4 1.2E-06 2.5E-11 61.3 6.5 109 29-150 28-140 (207)
106 KOG1534 Putative transcription 98.3 1.7E-06 3.8E-11 63.6 6.5 108 31-151 2-109 (273)
107 COG1703 ArgK Putative periplas 98.3 7.5E-06 1.6E-10 63.2 10.1 104 28-149 48-153 (323)
108 PRK01077 cobyrinic acid a,c-di 98.3 4.6E-06 1E-10 68.8 8.8 40 31-71 3-42 (451)
109 cd01394 radB RadB. The archaea 98.3 6.2E-06 1.3E-10 61.3 8.6 41 32-73 19-59 (218)
110 PRK00889 adenylylsulfate kinas 98.3 1.3E-06 2.9E-11 62.8 4.6 41 31-73 4-44 (175)
111 PRK06995 flhF flagellar biosyn 98.3 2.3E-06 5E-11 70.7 6.4 44 31-75 256-300 (484)
112 PF03308 ArgK: ArgK protein; 98.3 2.9E-06 6.3E-11 64.4 6.4 103 29-149 27-131 (266)
113 PRK09361 radB DNA repair and r 98.2 1.1E-05 2.4E-10 60.3 8.4 38 32-70 23-60 (225)
114 TIGR02237 recomb_radB DNA repa 98.2 1.6E-05 3.5E-10 58.6 8.7 38 33-71 13-50 (209)
115 TIGR00176 mobB molybdopterin-g 98.2 1.1E-05 2.4E-10 57.1 7.3 37 34-72 2-38 (155)
116 KOG0781 Signal recognition par 98.1 4.6E-06 1E-10 67.9 5.8 102 30-151 377-478 (587)
117 PF01583 APS_kinase: Adenylyls 98.1 4.3E-06 9.3E-11 59.1 3.7 104 33-149 3-110 (156)
118 cd01124 KaiC KaiC is a circadi 98.1 1.2E-05 2.5E-10 58.2 6.1 40 35-75 2-41 (187)
119 COG1763 MobB Molybdopterin-gua 98.1 6.2E-05 1.3E-09 53.6 9.5 41 31-73 2-42 (161)
120 PRK14495 putative molybdopteri 98.0 3.3E-05 7.1E-10 62.9 8.6 39 31-71 1-39 (452)
121 PRK12374 putative dithiobiotin 98.0 2.3E-05 5E-10 59.0 7.4 36 31-67 2-37 (231)
122 PHA02542 41 41 helicase; Provi 98.0 3.1E-06 6.7E-11 70.0 2.8 46 31-77 189-234 (473)
123 PF03205 MobB: Molybdopterin g 98.0 1.7E-05 3.7E-10 55.2 6.0 41 32-74 1-42 (140)
124 cd01120 RecA-like_NTPases RecA 98.0 2.5E-05 5.4E-10 54.6 6.8 40 35-75 2-41 (165)
125 TIGR00313 cobQ cobyric acid sy 97.9 9E-05 1.9E-09 61.6 9.7 35 34-69 1-35 (475)
126 PRK06067 flagellar accessory p 97.9 6.2E-05 1.3E-09 56.6 8.0 40 32-72 25-64 (234)
127 PRK04296 thymidine kinase; Pro 97.9 0.00026 5.7E-09 51.7 10.9 34 33-67 3-36 (190)
128 cd01125 repA Hexameric Replica 97.9 3.6E-05 7.7E-10 58.2 6.5 42 33-74 2-54 (239)
129 cd00561 CobA_CobO_BtuR ATP:cor 97.9 0.0002 4.4E-09 50.9 9.7 35 33-69 4-38 (159)
130 PRK08533 flagellar accessory p 97.9 0.00012 2.7E-09 55.1 8.9 39 34-73 26-64 (230)
131 smart00382 AAA ATPases associa 97.9 9.4E-05 2E-09 49.8 7.4 40 32-73 3-42 (148)
132 COG1066 Sms Predicted ATP-depe 97.9 4.7E-05 1E-09 61.2 6.6 41 31-73 92-132 (456)
133 PRK08233 hypothetical protein; 97.9 9.2E-05 2E-09 53.2 7.6 38 31-72 3-40 (182)
134 PRK07667 uridine kinase; Provi 97.8 6.5E-05 1.4E-09 55.0 5.8 41 31-73 17-57 (193)
135 TIGR00708 cobA cob(I)alamin ad 97.8 0.00026 5.7E-09 50.9 8.7 36 33-70 7-42 (173)
136 PF10609 ParA: ParA/MinD ATPas 97.8 1.3E-05 2.9E-10 50.2 1.7 27 141-167 2-28 (81)
137 TIGR02012 tigrfam_recA protein 97.7 0.00017 3.6E-09 56.9 8.0 39 31-71 55-93 (321)
138 PRK11823 DNA repair protein Ra 97.7 0.00014 2.9E-09 60.0 7.4 40 32-72 80-119 (446)
139 cd00983 recA RecA is a bacter 97.7 0.00018 3.9E-09 56.8 7.5 38 33-71 56-93 (325)
140 cd01121 Sms Sms (bacterial rad 97.7 0.00014 3.1E-09 58.5 7.1 40 32-72 82-121 (372)
141 PRK05632 phosphate acetyltrans 97.7 0.00018 3.8E-09 62.4 8.1 37 31-68 2-38 (684)
142 TIGR03877 thermo_KaiC_1 KaiC d 97.7 0.00027 5.8E-09 53.4 7.8 41 32-73 21-61 (237)
143 PRK14494 putative molybdopteri 97.6 0.00012 2.6E-09 55.1 5.6 38 31-70 1-38 (229)
144 TIGR00416 sms DNA repair prote 97.6 0.00015 3.3E-09 59.9 6.6 40 32-72 94-133 (454)
145 PRK06696 uridine kinase; Valid 97.6 0.00013 2.9E-09 54.5 5.7 43 32-75 22-64 (223)
146 PRK10751 molybdopterin-guanine 97.6 0.00052 1.1E-08 49.5 8.2 40 31-72 6-45 (173)
147 PRK00784 cobyric acid synthase 97.6 0.00036 7.8E-09 58.2 8.4 37 31-68 2-38 (488)
148 TIGR02238 recomb_DMC1 meiotic 97.6 0.00023 5.1E-09 56.0 6.7 42 31-72 95-141 (313)
149 PRK05973 replicative DNA helic 97.6 0.00013 2.8E-09 55.2 5.0 42 31-73 63-104 (237)
150 TIGR02655 circ_KaiC circadian 97.6 0.00016 3.5E-09 60.2 6.0 42 31-73 262-303 (484)
151 cd01393 recA_like RecA is a b 97.6 0.0004 8.7E-09 51.7 7.6 40 31-72 19-64 (226)
152 cd03116 MobB Molybdenum is an 97.6 0.00021 4.6E-09 50.8 5.8 41 31-73 1-41 (159)
153 COG0132 BioD Dethiobiotin synt 97.6 0.00047 1E-08 51.6 7.6 36 31-67 2-37 (223)
154 PF13479 AAA_24: AAA domain 97.5 0.00043 9.3E-09 51.5 7.4 32 33-73 4-35 (213)
155 PF13245 AAA_19: Part of AAA d 97.5 0.0002 4.4E-09 44.5 4.7 36 34-70 12-51 (76)
156 PRK03846 adenylylsulfate kinas 97.5 0.00015 3.3E-09 53.2 4.9 45 29-75 22-66 (198)
157 PRK14721 flhF flagellar biosyn 97.5 0.00052 1.1E-08 56.0 8.2 45 29-74 189-234 (420)
158 PRK05986 cob(I)alamin adenolsy 97.5 0.0012 2.7E-08 48.2 9.3 37 33-71 24-60 (191)
159 PRK04328 hypothetical protein; 97.5 0.00055 1.2E-08 52.2 7.8 40 33-73 24-63 (249)
160 PRK07952 DNA replication prote 97.5 0.00016 3.5E-09 54.9 4.5 35 34-69 101-135 (244)
161 PRK15453 phosphoribulokinase; 97.5 0.00026 5.7E-09 54.7 5.7 42 31-74 5-46 (290)
162 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00021 4.5E-09 53.6 5.1 39 33-72 20-64 (235)
163 TIGR03878 thermo_KaiC_2 KaiC d 97.5 0.0002 4.4E-09 54.9 5.0 40 31-71 35-74 (259)
164 cd02027 APSK Adenosine 5'-phos 97.5 0.00012 2.5E-09 51.5 3.4 39 35-74 2-40 (149)
165 cd02028 UMPK_like Uridine mono 97.4 0.0002 4.3E-09 51.9 4.3 37 36-73 3-39 (179)
166 PRK14491 putative bifunctional 97.4 0.001 2.2E-08 56.9 9.0 41 31-73 10-50 (597)
167 PF06745 KaiC: KaiC; InterPro 97.4 0.00056 1.2E-08 51.1 6.7 39 34-73 21-60 (226)
168 TIGR03574 selen_PSTK L-seryl-t 97.4 0.0002 4.3E-09 54.5 4.1 37 35-72 2-38 (249)
169 TIGR03575 selen_PSTK_euk L-ser 97.4 0.00022 4.8E-09 56.6 4.3 40 34-73 1-40 (340)
170 cd03112 CobW_like The function 97.4 0.0026 5.7E-08 45.0 9.5 37 34-73 2-38 (158)
171 COG0467 RAD55 RecA-superfamily 97.4 0.0008 1.7E-08 51.5 7.0 46 31-78 23-68 (260)
172 cd03109 DTBS Dethiobiotin synt 97.4 0.001 2.2E-08 45.9 6.8 35 36-72 4-38 (134)
173 COG1618 Predicted nucleotide k 97.4 0.0028 6E-08 45.0 9.0 38 31-70 5-42 (179)
174 COG3598 RepA RecA-family ATPas 97.3 0.00086 1.9E-08 52.6 6.9 49 32-80 89-146 (402)
175 cd01122 GP4d_helicase GP4d_hel 97.3 0.00037 8E-09 53.4 5.0 40 32-72 30-70 (271)
176 KOG2749 mRNA cleavage and poly 97.3 0.0024 5.2E-08 50.7 9.3 46 29-76 101-146 (415)
177 cd00984 DnaB_C DnaB helicase C 97.3 0.00039 8.5E-09 52.4 4.9 40 33-73 14-54 (242)
178 TIGR00379 cobB cobyrinic acid 97.3 0.0014 3.1E-08 54.1 8.4 35 34-69 2-36 (449)
179 PLN03187 meiotic recombination 97.3 0.00086 1.9E-08 53.4 6.8 42 31-72 125-171 (344)
180 TIGR01618 phage_P_loop phage n 97.3 0.001 2.3E-08 49.7 6.9 32 33-72 13-44 (220)
181 COG0468 RecA RecA/RadA recombi 97.3 0.0016 3.5E-08 50.4 8.0 41 31-72 59-99 (279)
182 cd02029 PRK_like Phosphoribulo 97.2 0.00059 1.3E-08 52.4 4.9 39 34-74 2-40 (277)
183 PF13207 AAA_17: AAA domain; P 97.2 0.00051 1.1E-08 46.0 4.1 31 35-69 2-32 (121)
184 PF13481 AAA_25: AAA domain; P 97.2 0.00052 1.1E-08 49.8 4.4 41 33-73 33-82 (193)
185 TIGR00073 hypB hydrogenase acc 97.2 0.0053 1.2E-07 45.3 9.7 42 28-72 19-60 (207)
186 PRK05541 adenylylsulfate kinas 97.2 0.00079 1.7E-08 48.3 4.9 38 34-72 9-46 (176)
187 PLN03186 DNA repair protein RA 97.1 0.0016 3.6E-08 51.9 6.8 42 31-72 122-168 (342)
188 PRK05480 uridine/cytidine kina 97.1 0.0013 2.9E-08 48.5 5.8 39 31-73 6-44 (209)
189 PRK06762 hypothetical protein; 97.1 0.00069 1.5E-08 48.1 4.1 38 32-73 2-39 (166)
190 COG1484 DnaC DNA replication p 97.1 0.00089 1.9E-08 51.2 4.8 38 31-70 105-142 (254)
191 TIGR00455 apsK adenylylsulfate 97.1 0.0013 2.7E-08 47.6 5.4 40 33-73 19-58 (184)
192 PRK09519 recA DNA recombinatio 97.1 0.0021 4.5E-08 56.3 7.4 41 32-73 60-100 (790)
193 PF03796 DnaB_C: DnaB-like hel 97.1 0.001 2.2E-08 50.8 5.1 41 32-73 19-60 (259)
194 PHA00729 NTP-binding motif con 97.1 0.00069 1.5E-08 50.8 4.0 38 32-71 18-68 (226)
195 PRK07414 cob(I)yrinic acid a,c 97.1 0.0052 1.1E-07 44.4 8.2 37 33-71 23-59 (178)
196 TIGR03880 KaiC_arch_3 KaiC dom 97.0 0.0017 3.8E-08 48.4 5.6 41 31-73 16-56 (224)
197 PF01695 IstB_IS21: IstB-like 97.0 0.00092 2E-08 48.4 3.9 38 31-70 47-84 (178)
198 PRK09302 circadian clock prote 97.0 0.0029 6.3E-08 53.1 7.3 42 33-75 32-74 (509)
199 TIGR03600 phage_DnaB phage rep 97.0 0.0013 2.8E-08 53.8 5.1 43 31-73 193-235 (421)
200 TIGR03881 KaiC_arch_4 KaiC dom 97.0 0.002 4.4E-08 48.2 5.6 40 33-73 21-60 (229)
201 PRK06526 transposase; Provisio 96.9 0.00064 1.4E-08 52.0 2.6 37 32-70 99-135 (254)
202 PRK05439 pantothenate kinase; 96.9 0.0023 4.9E-08 50.4 5.7 42 31-73 86-128 (311)
203 COG4088 Predicted nucleotide k 96.9 0.001 2.2E-08 49.2 3.5 39 34-73 3-41 (261)
204 PRK09354 recA recombinase A; P 96.9 0.0021 4.5E-08 51.3 5.4 40 32-72 60-99 (349)
205 PF00154 RecA: recA bacterial 96.9 0.0051 1.1E-07 48.6 7.5 40 31-72 53-92 (322)
206 PTZ00035 Rad51 protein; Provis 96.9 0.0032 7E-08 50.1 6.4 41 32-72 118-163 (337)
207 PRK12377 putative replication 96.9 0.0018 3.9E-08 49.3 4.6 35 35-70 104-138 (248)
208 PRK05595 replicative DNA helic 96.8 0.002 4.4E-08 53.1 5.1 43 31-73 200-242 (444)
209 COG2874 FlaH Predicted ATPases 96.8 0.0087 1.9E-07 44.5 7.7 108 31-150 27-134 (235)
210 PF13500 AAA_26: AAA domain; P 96.8 0.003 6.6E-08 46.2 5.4 35 32-67 1-35 (199)
211 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0093 2E-07 47.1 8.3 41 32-72 96-141 (316)
212 PRK10463 hydrogenase nickel in 96.8 0.007 1.5E-07 47.1 7.3 42 29-73 102-143 (290)
213 PF08423 Rad51: Rad51; InterP 96.8 0.00067 1.5E-08 51.9 1.6 49 32-81 38-91 (256)
214 PF08433 KTI12: Chromatin asso 96.7 0.0021 4.6E-08 49.6 4.3 37 34-71 3-39 (270)
215 PRK08506 replicative DNA helic 96.7 0.0029 6.3E-08 52.6 5.3 42 31-73 191-232 (472)
216 PRK09183 transposase/IS protei 96.7 0.0027 5.8E-08 48.7 4.6 37 31-69 102-138 (259)
217 PF00485 PRK: Phosphoribulokin 96.7 0.002 4.3E-08 47.1 3.7 37 33-71 1-41 (194)
218 PRK05642 DNA replication initi 96.7 0.0022 4.9E-08 48.4 4.0 37 34-71 47-83 (234)
219 TIGR00665 DnaB replicative DNA 96.7 0.0035 7.6E-08 51.5 5.5 43 31-73 194-236 (434)
220 cd02019 NK Nucleoside/nucleoti 96.7 0.0035 7.6E-08 38.0 4.2 31 36-69 3-33 (69)
221 PF07652 Flavi_DEAD: Flaviviru 96.7 0.016 3.5E-07 40.4 7.8 108 33-160 5-116 (148)
222 PRK08760 replicative DNA helic 96.7 0.003 6.4E-08 52.6 4.9 43 31-73 228-270 (476)
223 PRK06749 replicative DNA helic 96.7 0.0029 6.3E-08 52.0 4.7 42 31-73 185-226 (428)
224 PRK08903 DnaA regulatory inact 96.6 0.0033 7.2E-08 46.9 4.6 37 34-71 44-80 (227)
225 PRK06893 DNA replication initi 96.6 0.003 6.5E-08 47.5 4.4 37 34-71 41-77 (229)
226 PRK08727 hypothetical protein; 96.6 0.0028 6.1E-08 47.8 4.2 38 35-73 44-81 (233)
227 cd00009 AAA The AAA+ (ATPases 96.6 0.0041 8.8E-08 42.1 4.5 39 34-73 21-59 (151)
228 PF13086 AAA_11: AAA domain; P 96.6 0.0024 5.1E-08 47.2 3.5 36 34-70 19-62 (236)
229 TIGR00682 lpxK tetraacyldisacc 96.6 0.0046 1E-07 48.7 5.2 41 30-71 27-68 (311)
230 COG2403 Predicted GTPase [Gene 96.6 0.0042 9E-08 49.6 4.8 40 29-69 124-163 (449)
231 PRK06835 DNA replication prote 96.6 0.0031 6.8E-08 50.0 4.2 38 32-71 184-221 (329)
232 COG2109 BtuR ATP:corrinoid ade 96.6 0.023 5E-07 41.4 8.2 35 33-69 30-64 (198)
233 TIGR03420 DnaA_homol_Hda DnaA 96.6 0.0033 7.1E-08 46.7 4.1 40 31-72 38-77 (226)
234 PRK00652 lpxK tetraacyldisacch 96.6 0.0042 9.1E-08 49.2 4.8 40 31-71 49-89 (325)
235 PRK08006 replicative DNA helic 96.5 0.0047 1E-07 51.4 5.3 43 31-73 223-265 (471)
236 TIGR02236 recomb_radA DNA repa 96.5 0.0041 9E-08 48.8 4.7 41 32-72 95-140 (310)
237 PRK05748 replicative DNA helic 96.5 0.0049 1.1E-07 50.9 5.3 44 31-74 202-245 (448)
238 PTZ00301 uridine kinase; Provi 96.5 0.0076 1.7E-07 44.8 5.8 43 31-74 3-46 (210)
239 TIGR00041 DTMP_kinase thymidyl 96.5 0.006 1.3E-07 44.3 5.2 36 34-70 5-40 (195)
240 PRK08939 primosomal protein Dn 96.5 0.004 8.6E-08 49.0 4.4 38 31-70 156-193 (306)
241 COG1797 CobB Cobyrinic acid a, 96.5 0.003 6.4E-08 51.4 3.8 38 33-71 2-39 (451)
242 PRK06904 replicative DNA helic 96.5 0.0054 1.2E-07 51.0 5.4 43 31-73 220-262 (472)
243 PRK08084 DNA replication initi 96.5 0.0041 8.8E-08 47.0 4.3 38 34-72 47-84 (235)
244 PF12846 AAA_10: AAA-like doma 96.5 0.0043 9.4E-08 47.7 4.5 35 36-71 5-39 (304)
245 PRK14489 putative bifunctional 96.5 0.0081 1.8E-07 48.4 6.2 42 30-73 204-245 (366)
246 PF02572 CobA_CobO_BtuR: ATP:c 96.5 0.0065 1.4E-07 43.7 5.0 36 34-71 6-41 (172)
247 cd01672 TMPK Thymidine monopho 96.5 0.0063 1.4E-07 44.0 5.0 35 35-70 3-37 (200)
248 PRK08840 replicative DNA helic 96.5 0.0053 1.1E-07 51.0 5.0 43 31-73 216-258 (464)
249 PRK08181 transposase; Validate 96.5 0.0037 8.1E-08 48.2 3.9 35 35-70 109-143 (269)
250 PRK13507 formate--tetrahydrofo 96.4 0.0062 1.4E-07 51.0 5.3 71 30-104 62-135 (587)
251 PF02492 cobW: CobW/HypB/UreG, 96.4 0.023 5.1E-07 40.9 7.6 38 34-73 2-39 (178)
252 COG2759 MIS1 Formyltetrahydrof 96.4 0.0025 5.3E-08 52.0 2.6 70 29-102 50-122 (554)
253 PLN02200 adenylate kinase fami 96.4 0.0052 1.1E-07 46.4 4.3 36 21-56 32-67 (234)
254 PRK08116 hypothetical protein; 96.4 0.0059 1.3E-07 47.1 4.6 36 34-70 116-151 (268)
255 PRK09270 nucleoside triphospha 96.4 0.0076 1.6E-07 45.2 5.1 41 31-73 33-74 (229)
256 PRK06321 replicative DNA helic 96.4 0.0066 1.4E-07 50.5 5.1 43 31-73 225-267 (472)
257 PF01268 FTHFS: Formate--tetra 96.4 0.0038 8.2E-08 52.2 3.6 75 9-87 31-109 (557)
258 cd02023 UMPK Uridine monophosp 96.3 0.0056 1.2E-07 44.7 4.2 36 34-73 2-37 (198)
259 PF05729 NACHT: NACHT domain 96.3 0.0052 1.1E-07 42.9 3.8 27 34-61 2-28 (166)
260 PF09848 DUF2075: Uncharacteri 96.3 0.006 1.3E-07 48.8 4.5 39 32-71 1-41 (352)
261 COG1102 Cmk Cytidylate kinase 96.3 0.0037 8.1E-08 44.4 2.9 24 35-58 3-26 (179)
262 PRK04301 radA DNA repair and r 96.3 0.0069 1.5E-07 47.8 4.7 40 32-72 102-147 (317)
263 PF13401 AAA_22: AAA domain; P 96.3 0.0039 8.5E-08 42.1 2.9 42 31-73 3-49 (131)
264 PRK09165 replicative DNA helic 96.3 0.0084 1.8E-07 50.2 5.2 44 31-74 216-273 (497)
265 PRK07004 replicative DNA helic 96.3 0.0088 1.9E-07 49.6 5.3 43 31-73 212-254 (460)
266 PRK06921 hypothetical protein; 96.2 0.0072 1.6E-07 46.6 4.4 37 31-69 117-154 (266)
267 PRK06851 hypothetical protein; 96.2 0.016 3.5E-07 46.6 6.5 49 30-79 212-260 (367)
268 PF13604 AAA_30: AAA domain; P 96.2 0.0081 1.8E-07 44.1 4.5 37 33-70 19-55 (196)
269 PF13173 AAA_14: AAA domain 96.2 0.0078 1.7E-07 40.9 4.1 39 32-73 3-41 (128)
270 cd02025 PanK Pantothenate kina 96.2 0.0077 1.7E-07 45.1 4.4 39 34-73 2-41 (220)
271 TIGR00554 panK_bact pantothena 96.2 0.011 2.4E-07 46.1 5.4 43 31-74 62-105 (290)
272 PRK06761 hypothetical protein; 96.2 0.0082 1.8E-07 46.6 4.6 40 33-73 4-44 (282)
273 PRK05506 bifunctional sulfate 96.2 0.0079 1.7E-07 51.8 4.9 45 32-77 460-504 (632)
274 COG4240 Predicted kinase [Gene 96.1 0.012 2.7E-07 44.2 4.8 40 31-71 49-89 (300)
275 PRK07933 thymidylate kinase; V 96.1 0.013 2.7E-07 43.7 5.0 35 35-70 3-37 (213)
276 PRK05537 bifunctional sulfate 96.1 0.011 2.5E-07 50.2 5.3 44 29-73 390-433 (568)
277 cd02021 GntK Gluconate kinase 96.1 0.005 1.1E-07 42.8 2.7 34 35-74 2-35 (150)
278 PLN03046 D-glycerate 3-kinase; 96.1 0.012 2.5E-07 48.2 5.0 40 32-72 212-251 (460)
279 PF06414 Zeta_toxin: Zeta toxi 96.1 0.0068 1.5E-07 44.5 3.4 44 29-75 12-55 (199)
280 PLN02759 Formate--tetrahydrofo 96.1 0.018 3.9E-07 48.7 6.1 92 9-103 46-141 (637)
281 PRK08118 topology modulation p 96.0 0.0078 1.7E-07 43.1 3.4 25 32-57 2-26 (167)
282 PRK05636 replicative DNA helic 96.0 0.012 2.7E-07 49.3 5.0 43 31-73 264-306 (505)
283 PLN02796 D-glycerate 3-kinase 96.0 0.011 2.5E-07 47.0 4.6 39 32-71 100-138 (347)
284 PRK06217 hypothetical protein; 96.0 0.0079 1.7E-07 43.5 3.4 31 34-71 4-34 (183)
285 PRK09302 circadian clock prote 96.0 0.013 2.9E-07 49.1 5.1 40 31-72 273-312 (509)
286 PRK13896 cobyrinic acid a,c-di 96.0 0.012 2.6E-07 48.5 4.6 40 31-71 1-40 (433)
287 PRK00131 aroK shikimate kinase 95.9 0.008 1.7E-07 42.6 3.0 32 34-71 6-37 (175)
288 PRK11537 putative GTP-binding 95.9 0.089 1.9E-06 41.6 9.0 41 31-75 4-44 (318)
289 PF13238 AAA_18: AAA domain; P 95.8 0.0082 1.8E-07 40.2 2.7 21 36-56 2-22 (129)
290 TIGR03172 probable selenium-de 95.8 0.0088 1.9E-07 45.1 3.1 32 34-69 2-33 (232)
291 COG0572 Udk Uridine kinase [Nu 95.8 0.021 4.6E-07 42.6 5.0 39 31-73 8-46 (218)
292 TIGR01360 aden_kin_iso1 adenyl 95.8 0.013 2.7E-07 42.2 3.7 25 31-56 3-27 (188)
293 KOG3062 RNA polymerase II elon 95.8 0.039 8.4E-07 41.5 6.1 35 34-69 3-39 (281)
294 PRK14490 putative bifunctional 95.7 0.028 6E-07 45.4 5.8 38 31-71 5-42 (369)
295 TIGR02655 circ_KaiC circadian 95.7 0.018 3.8E-07 48.2 4.8 40 33-72 22-61 (484)
296 cd02024 NRK1 Nicotinamide ribo 95.7 0.011 2.5E-07 43.1 3.1 32 37-73 4-35 (187)
297 PF03266 NTPase_1: NTPase; In 95.6 0.016 3.4E-07 41.6 3.7 28 36-64 3-30 (168)
298 TIGR00235 udk uridine kinase. 95.6 0.023 5.1E-07 41.9 4.7 38 31-72 6-43 (207)
299 PF01935 DUF87: Domain of unkn 95.6 0.017 3.8E-07 43.1 4.0 41 31-73 23-64 (229)
300 PLN02348 phosphoribulokinase 95.6 0.029 6.2E-07 45.5 5.4 41 31-73 49-104 (395)
301 PF13671 AAA_33: AAA domain; P 95.6 0.0091 2E-07 40.9 2.3 32 34-71 1-32 (143)
302 PF07724 AAA_2: AAA domain (Cd 95.6 0.026 5.7E-07 40.5 4.7 43 31-74 2-45 (171)
303 cd01131 PilT Pilus retraction 95.6 0.027 5.8E-07 41.4 4.8 37 34-70 3-39 (198)
304 PRK06851 hypothetical protein; 95.6 0.044 9.5E-07 44.2 6.3 45 31-76 29-73 (367)
305 PLN02924 thymidylate kinase 95.6 0.03 6.4E-07 42.0 5.0 39 29-69 14-52 (220)
306 PRK07773 replicative DNA helic 95.5 0.027 5.8E-07 50.5 5.4 44 31-74 216-259 (886)
307 PRK06547 hypothetical protein; 95.5 0.018 3.9E-07 41.4 3.6 36 31-73 15-50 (172)
308 PRK00698 tmk thymidylate kinas 95.5 0.033 7.1E-07 40.6 5.1 37 31-69 3-39 (205)
309 PF00004 AAA: ATPase family as 95.5 0.028 6.1E-07 37.7 4.4 33 36-72 2-34 (132)
310 TIGR02475 CobW cobalamin biosy 95.4 0.27 5.9E-06 39.3 10.4 43 31-77 4-46 (341)
311 PRK12339 2-phosphoglycerate ki 95.4 0.018 3.8E-07 42.4 3.4 36 33-73 4-39 (197)
312 PF13191 AAA_16: AAA ATPase do 95.4 0.021 4.7E-07 40.7 3.8 39 33-72 25-63 (185)
313 PF00910 RNA_helicase: RNA hel 95.4 0.019 4.2E-07 37.8 3.2 23 36-58 2-24 (107)
314 cd02020 CMPK Cytidine monophos 95.3 0.016 3.4E-07 39.9 2.8 22 35-56 2-23 (147)
315 TIGR00376 DNA helicase, putati 95.3 0.028 6E-07 48.6 4.7 35 33-68 174-208 (637)
316 PRK12422 chromosomal replicati 95.3 0.021 4.6E-07 47.2 3.9 37 33-71 143-179 (445)
317 TIGR01313 therm_gnt_kin carboh 95.3 0.017 3.6E-07 40.8 2.8 32 36-73 2-33 (163)
318 COG2074 2-phosphoglycerate kin 95.3 0.021 4.5E-07 43.6 3.4 36 31-71 88-123 (299)
319 TIGR00362 DnaA chromosomal rep 95.3 0.023 4.9E-07 46.3 3.9 36 35-71 139-176 (405)
320 PRK12338 hypothetical protein; 95.2 0.02 4.3E-07 45.3 3.3 37 32-73 4-40 (319)
321 TIGR03345 VI_ClpV1 type VI sec 95.2 0.077 1.7E-06 47.4 7.2 49 34-83 598-648 (852)
322 PRK01906 tetraacyldisaccharide 95.2 0.025 5.5E-07 45.1 3.8 41 31-72 56-97 (338)
323 PHA02530 pseT polynucleotide k 95.1 0.021 4.5E-07 44.4 3.1 36 32-72 2-37 (300)
324 PRK13973 thymidylate kinase; P 95.1 0.055 1.2E-06 40.2 5.2 37 31-69 3-39 (213)
325 PRK04220 2-phosphoglycerate ki 95.1 0.029 6.2E-07 44.0 3.8 38 31-73 91-128 (301)
326 COG1855 ATPase (PilT family) [ 95.1 0.032 6.8E-07 46.0 4.0 35 31-67 263-297 (604)
327 COG1072 CoaA Panthothenate kin 95.1 0.061 1.3E-06 41.5 5.4 43 30-73 80-124 (283)
328 PF02606 LpxK: Tetraacyldisacc 95.0 0.027 5.9E-07 44.7 3.6 42 30-72 34-76 (326)
329 PRK03731 aroL shikimate kinase 95.0 0.032 6.9E-07 39.6 3.7 33 32-71 3-35 (171)
330 TIGR02782 TrbB_P P-type conjug 95.0 0.04 8.6E-07 43.2 4.4 34 35-69 135-170 (299)
331 KOG2743 Cobalamin synthesis pr 95.0 0.15 3.3E-06 40.0 7.4 105 31-157 57-163 (391)
332 PRK06278 cobyrinic acid a,c-di 95.0 0.046 1E-06 45.6 4.9 38 28-69 235-272 (476)
333 cd00227 CPT Chloramphenicol (C 95.0 0.029 6.2E-07 40.2 3.3 24 34-57 4-27 (175)
334 PRK04040 adenylate kinase; Pro 94.9 0.031 6.7E-07 40.8 3.4 26 31-57 2-27 (188)
335 PRK00149 dnaA chromosomal repl 94.9 0.035 7.5E-07 45.9 4.0 36 35-71 151-188 (450)
336 cd01129 PulE-GspE PulE/GspE Th 94.9 0.039 8.4E-07 42.5 4.1 38 31-69 79-116 (264)
337 PF02223 Thymidylate_kin: Thym 94.8 0.031 6.8E-07 40.3 3.2 33 39-73 3-35 (186)
338 PF07728 AAA_5: AAA domain (dy 94.8 0.058 1.3E-06 36.9 4.4 40 37-81 4-43 (139)
339 TIGR02640 gas_vesic_GvpN gas v 94.8 0.051 1.1E-06 41.7 4.5 32 37-72 26-57 (262)
340 PRK13947 shikimate kinase; Pro 94.8 0.033 7.2E-07 39.5 3.3 30 36-71 5-34 (171)
341 COG1492 CobQ Cobyric acid synt 94.8 0.082 1.8E-06 43.9 5.9 119 32-154 2-140 (486)
342 TIGR01359 UMP_CMP_kin_fam UMP- 94.8 0.025 5.4E-07 40.6 2.7 22 35-56 2-23 (183)
343 PF00437 T2SE: Type II/IV secr 94.8 0.043 9.3E-07 42.1 4.0 37 32-69 127-163 (270)
344 KOG0991 Replication factor C, 94.7 0.075 1.6E-06 40.4 5.0 40 30-71 47-86 (333)
345 PTZ00386 formyl tetrahydrofola 94.7 0.048 1E-06 46.2 4.3 72 30-105 67-142 (625)
346 PRK14088 dnaA chromosomal repl 94.7 0.041 8.8E-07 45.5 3.9 36 35-71 133-170 (440)
347 COG5623 CLP1 Predicted GTPase 94.7 0.07 1.5E-06 41.9 4.9 44 31-76 99-142 (424)
348 PRK07261 topology modulation p 94.7 0.033 7.1E-07 39.9 3.0 22 34-56 3-24 (171)
349 TIGR03346 chaperone_ClpB ATP-d 94.7 0.32 6.8E-06 43.6 9.6 38 34-72 597-634 (852)
350 PRK13948 shikimate kinase; Pro 94.6 0.035 7.5E-07 40.4 3.0 33 32-71 11-43 (182)
351 PRK03839 putative kinase; Prov 94.6 0.039 8.4E-07 39.6 3.3 23 35-57 3-25 (180)
352 PRK07429 phosphoribulokinase; 94.6 0.059 1.3E-06 42.8 4.4 36 31-68 8-43 (327)
353 cd00544 CobU Adenosylcobinamid 94.6 0.056 1.2E-06 38.8 4.0 33 35-71 2-34 (169)
354 COG3854 SpoIIIAA ncharacterize 94.6 0.064 1.4E-06 40.6 4.3 37 35-71 140-180 (308)
355 PRK00091 miaA tRNA delta(2)-is 94.5 0.067 1.5E-06 42.1 4.6 33 33-71 5-37 (307)
356 cd00046 DEXDc DEAD-like helica 94.5 0.081 1.8E-06 35.1 4.5 33 35-67 3-36 (144)
357 COG1936 Predicted nucleotide k 94.5 0.052 1.1E-06 39.0 3.5 19 34-53 3-21 (180)
358 TIGR02746 TraC-F-type type-IV 94.4 0.051 1.1E-06 48.1 4.2 41 35-76 433-473 (797)
359 PRK13764 ATPase; Provisional 94.4 0.066 1.4E-06 45.9 4.7 36 31-68 257-292 (602)
360 COG0305 DnaB Replicative DNA h 94.4 0.088 1.9E-06 43.3 5.2 43 31-73 195-237 (435)
361 PRK13975 thymidylate kinase; P 94.3 0.058 1.2E-06 39.1 3.6 26 33-58 3-28 (196)
362 COG3265 GntK Gluconate kinase 94.2 0.042 9E-07 38.6 2.5 30 39-74 2-31 (161)
363 COG0563 Adk Adenylate kinase a 94.2 0.063 1.4E-06 38.9 3.6 19 38-56 6-24 (178)
364 PF00931 NB-ARC: NB-ARC domain 94.2 0.048 1E-06 41.8 3.1 43 30-73 18-61 (287)
365 PRK02496 adk adenylate kinase; 94.2 0.069 1.5E-06 38.5 3.7 23 33-56 3-25 (184)
366 TIGR02880 cbbX_cfxQ probable R 94.2 0.074 1.6E-06 41.4 4.1 34 35-69 61-98 (284)
367 COG0237 CoaE Dephospho-CoA kin 94.1 0.061 1.3E-06 39.7 3.5 35 31-73 2-36 (201)
368 cd02026 PRK Phosphoribulokinas 94.1 0.049 1.1E-06 42.2 3.0 33 34-68 2-34 (273)
369 TIGR03783 Bac_Flav_CT_G Bacter 94.1 0.06 1.3E-06 47.9 3.9 40 36-76 442-481 (829)
370 PRK07413 hypothetical protein; 94.1 0.35 7.5E-06 39.2 7.8 37 33-71 21-63 (382)
371 PRK00625 shikimate kinase; Pro 94.0 0.049 1.1E-06 39.2 2.7 31 35-71 3-33 (173)
372 KOG4238 Bifunctional ATP sulfu 94.0 0.045 9.9E-07 43.9 2.7 52 35-87 53-104 (627)
373 KOG0744 AAA+-type ATPase [Post 94.0 0.11 2.4E-06 41.2 4.7 48 33-81 178-228 (423)
374 PRK14531 adenylate kinase; Pro 94.0 0.069 1.5E-06 38.6 3.4 23 35-57 5-27 (183)
375 PF00308 Bac_DnaA: Bacterial d 94.0 0.049 1.1E-06 40.7 2.7 39 32-71 35-74 (219)
376 PRK14528 adenylate kinase; Pro 93.9 0.075 1.6E-06 38.6 3.6 24 32-56 2-25 (186)
377 PRK14527 adenylate kinase; Pro 93.9 0.076 1.7E-06 38.6 3.6 27 31-58 6-32 (191)
378 PRK13721 conjugal transfer ATP 93.9 0.06 1.3E-06 48.1 3.6 45 35-80 452-496 (844)
379 KOG1969 DNA replication checkp 93.9 0.1 2.2E-06 45.4 4.7 43 27-73 321-363 (877)
380 PRK13946 shikimate kinase; Pro 93.9 0.051 1.1E-06 39.3 2.5 33 32-71 11-43 (184)
381 PRK04182 cytidylate kinase; Pr 93.8 0.063 1.4E-06 38.2 3.0 23 34-56 2-24 (180)
382 TIGR02322 phosphon_PhnN phosph 93.8 0.066 1.4E-06 38.3 3.1 25 34-58 3-27 (179)
383 PF01202 SKI: Shikimate kinase 93.8 0.034 7.3E-07 39.2 1.5 25 41-71 1-25 (158)
384 COG0857 Pta BioD-like N-termin 93.8 0.14 3E-06 41.2 5.1 36 31-67 2-37 (354)
385 PF05970 PIF1: PIF1-like helic 93.8 0.092 2E-06 42.3 4.2 50 33-83 23-79 (364)
386 PF05496 RuvB_N: Holliday junc 93.8 0.052 1.1E-06 40.8 2.4 26 32-58 51-76 (233)
387 PRK13949 shikimate kinase; Pro 93.7 0.068 1.5E-06 38.3 3.0 32 33-71 3-34 (169)
388 COG0378 HypB Ni2+-binding GTPa 93.7 0.16 3.5E-06 37.2 4.9 39 32-73 14-52 (202)
389 PRK00411 cdc6 cell division co 93.7 0.16 3.4E-06 41.0 5.4 37 35-72 58-96 (394)
390 PF01580 FtsK_SpoIIIE: FtsK/Sp 93.7 0.11 2.4E-06 38.0 4.2 44 37-82 43-89 (205)
391 PF13555 AAA_29: P-loop contai 93.7 0.12 2.5E-06 30.8 3.4 25 34-58 25-49 (62)
392 CHL00095 clpC Clp protease ATP 93.6 0.33 7.2E-06 43.3 7.7 38 34-72 541-578 (821)
393 PRK11545 gntK gluconate kinase 93.6 0.075 1.6E-06 37.7 3.1 29 39-73 2-30 (163)
394 TIGR02881 spore_V_K stage V sp 93.6 0.086 1.9E-06 40.3 3.5 25 36-61 46-70 (261)
395 PRK14964 DNA polymerase III su 93.6 0.39 8.5E-06 40.3 7.6 27 31-58 35-61 (491)
396 PRK14734 coaE dephospho-CoA ki 93.6 0.15 3.2E-06 37.6 4.6 32 32-71 2-33 (200)
397 KOG3347 Predicted nucleotide k 93.6 0.076 1.6E-06 37.4 2.9 23 33-56 9-31 (176)
398 KOG3354 Gluconate kinase [Carb 93.6 0.094 2E-06 37.2 3.3 38 31-74 11-48 (191)
399 CHL00181 cbbX CbbX; Provisiona 93.6 0.099 2.1E-06 40.7 3.8 34 35-69 62-99 (287)
400 PF02562 PhoH: PhoH-like prote 93.6 0.16 3.4E-06 37.7 4.7 33 34-67 21-55 (205)
401 PRK13695 putative NTPase; Prov 93.5 0.18 3.8E-06 36.0 4.9 28 37-65 5-32 (174)
402 TIGR00929 VirB4_CagE type IV s 93.5 0.11 2.4E-06 45.9 4.5 37 36-73 438-475 (785)
403 PRK14730 coaE dephospho-CoA ki 93.5 0.089 1.9E-06 38.6 3.4 33 33-72 3-35 (195)
404 smart00763 AAA_PrkA PrkA AAA d 93.5 0.096 2.1E-06 42.1 3.7 39 31-69 77-118 (361)
405 PRK10536 hypothetical protein; 93.5 0.15 3.2E-06 39.2 4.5 125 34-162 76-232 (262)
406 PRK00081 coaE dephospho-CoA ki 93.5 0.096 2.1E-06 38.3 3.5 34 31-72 2-35 (194)
407 PLN03025 replication factor C 93.5 0.11 2.4E-06 41.0 4.0 35 36-71 38-72 (319)
408 COG0125 Tmk Thymidylate kinase 93.5 0.21 4.7E-06 37.1 5.3 38 31-70 3-40 (208)
409 PRK13976 thymidylate kinase; P 93.4 0.16 3.5E-06 37.7 4.6 32 35-67 3-36 (209)
410 KOG1805 DNA replication helica 93.4 0.1 2.3E-06 46.5 3.9 40 31-71 684-723 (1100)
411 PLN03210 Resistant to P. syrin 93.3 0.16 3.5E-06 46.9 5.3 37 30-68 206-242 (1153)
412 PRK14532 adenylate kinase; Pro 93.3 0.078 1.7E-06 38.3 2.8 21 36-56 4-24 (188)
413 PRK14530 adenylate kinase; Pro 93.3 0.098 2.1E-06 38.8 3.3 23 33-56 5-27 (215)
414 COG3911 Predicted ATPase [Gene 93.3 0.11 2.4E-06 36.6 3.3 22 33-54 10-31 (183)
415 PRK12337 2-phosphoglycerate ki 93.3 0.096 2.1E-06 43.5 3.5 37 32-73 255-291 (475)
416 TIGR01420 pilT_fam pilus retra 93.3 0.14 2.9E-06 41.0 4.3 38 32-69 122-159 (343)
417 PRK14086 dnaA chromosomal repl 93.3 0.11 2.4E-06 44.6 3.9 37 35-71 317-354 (617)
418 TIGR02173 cyt_kin_arch cytidyl 93.3 0.092 2E-06 37.0 3.0 23 34-56 2-24 (171)
419 PLN02422 dephospho-CoA kinase 93.2 0.15 3.2E-06 38.6 4.2 33 32-72 2-34 (232)
420 PF05707 Zot: Zonular occluden 93.2 0.093 2E-06 38.3 3.1 35 34-70 2-37 (193)
421 TIGR02768 TraA_Ti Ti-type conj 93.2 0.15 3.3E-06 44.9 4.8 33 34-67 370-402 (744)
422 TIGR03015 pepcterm_ATPase puta 93.2 0.098 2.1E-06 39.8 3.3 25 34-58 45-69 (269)
423 KOG2004 Mitochondrial ATP-depe 93.1 0.075 1.6E-06 46.2 2.7 30 28-58 435-464 (906)
424 PTZ00451 dephospho-CoA kinase; 93.1 0.12 2.5E-06 39.4 3.5 35 31-72 1-35 (244)
425 cd01428 ADK Adenylate kinase ( 93.1 0.094 2E-06 37.8 2.9 21 36-56 3-23 (194)
426 PF13521 AAA_28: AAA domain; P 93.0 0.075 1.6E-06 37.5 2.2 21 34-55 2-22 (163)
427 PRK13833 conjugal transfer pro 93.0 0.17 3.6E-06 40.2 4.3 34 35-68 147-181 (323)
428 PRK14087 dnaA chromosomal repl 93.0 0.14 3E-06 42.5 4.0 37 35-71 144-181 (450)
429 PRK13873 conjugal transfer ATP 92.9 0.13 2.8E-06 45.8 4.0 46 35-80 444-489 (811)
430 PF01591 6PF2K: 6-phosphofruct 92.9 0.29 6.2E-06 36.8 5.3 42 29-71 9-50 (222)
431 PLN02974 adenosylmethionine-8- 92.9 0.28 6.1E-06 43.7 6.0 40 27-67 23-62 (817)
432 COG1663 LpxK Tetraacyldisaccha 92.9 0.13 2.8E-06 40.8 3.6 42 31-73 47-89 (336)
433 TIGR03754 conj_TOL_TraD conjug 92.9 0.21 4.6E-06 43.1 5.1 35 38-73 186-220 (643)
434 COG0194 Gmk Guanylate kinase [ 92.9 0.11 2.4E-06 37.8 2.9 24 33-56 5-28 (191)
435 PRK07413 hypothetical protein; 92.8 0.81 1.7E-05 37.1 8.0 37 33-71 202-244 (382)
436 PRK07003 DNA polymerase III su 92.8 0.62 1.3E-05 41.2 7.8 27 31-58 38-64 (830)
437 cd00464 SK Shikimate kinase (S 92.8 0.13 2.7E-06 35.6 3.1 29 37-71 4-32 (154)
438 PF02702 KdpD: Osmosensitive K 92.7 0.29 6.3E-06 36.2 5.0 41 30-71 3-43 (211)
439 TIGR02639 ClpA ATP-dependent C 92.7 0.23 5E-06 43.7 5.3 32 37-69 208-246 (731)
440 TIGR02524 dot_icm_DotB Dot/Icm 92.6 0.23 5E-06 40.0 4.8 35 33-67 135-171 (358)
441 COG0523 Putative GTPases (G3E 92.6 1.8 3.9E-05 34.4 9.7 36 35-73 4-39 (323)
442 TIGR01351 adk adenylate kinase 92.6 0.12 2.6E-06 38.2 2.8 20 37-56 4-23 (210)
443 PRK00279 adk adenylate kinase; 92.5 0.13 2.9E-06 38.1 3.1 22 34-56 3-24 (215)
444 PRK09112 DNA polymerase III su 92.5 1.7 3.6E-05 35.0 9.5 26 33-58 46-71 (351)
445 PRK12402 replication factor C 92.5 0.17 3.7E-06 39.8 3.8 35 35-70 39-75 (337)
446 PF02399 Herpes_ori_bp: Origin 92.4 0.14 3.1E-06 45.0 3.5 38 30-69 48-86 (824)
447 PRK12323 DNA polymerase III su 92.4 0.86 1.9E-05 39.7 8.0 26 33-58 39-64 (700)
448 KOG2878 Predicted kinase [Gene 92.4 0.25 5.4E-06 36.7 4.2 44 28-71 27-72 (282)
449 COG1428 Deoxynucleoside kinase 92.3 0.15 3.2E-06 37.9 3.1 24 34-57 6-29 (216)
450 COG0645 Predicted kinase [Gene 92.3 0.13 2.9E-06 36.8 2.7 26 33-58 2-27 (170)
451 PTZ00088 adenylate kinase 1; P 92.3 0.19 4.2E-06 37.8 3.8 22 34-56 9-30 (229)
452 KOG3220 Similar to bacterial d 92.3 0.063 1.4E-06 39.6 1.1 27 124-151 92-118 (225)
453 PRK14733 coaE dephospho-CoA ki 92.3 0.19 4.1E-06 37.2 3.7 35 32-73 7-41 (204)
454 TIGR00101 ureG urease accessor 92.3 0.29 6.3E-06 36.0 4.6 38 33-73 3-40 (199)
455 COG3910 Predicted ATPase [Gene 92.3 0.11 2.5E-06 38.1 2.3 61 11-81 26-88 (233)
456 TIGR00017 cmk cytidylate kinas 92.3 0.18 3.9E-06 37.6 3.5 24 33-57 4-27 (217)
457 cd01128 rho_factor Transcripti 92.2 0.21 4.5E-06 38.2 3.8 28 30-58 15-42 (249)
458 PF00580 UvrD-helicase: UvrD/R 92.2 0.2 4.3E-06 38.7 3.9 37 33-71 15-55 (315)
459 PLN02165 adenylate isopentenyl 92.2 0.16 3.5E-06 40.4 3.3 34 31-71 43-76 (334)
460 TIGR01650 PD_CobS cobaltochela 92.2 0.27 5.8E-06 39.1 4.5 43 33-81 66-108 (327)
461 TIGR02928 orc1/cdc6 family rep 92.1 0.25 5.4E-06 39.4 4.4 38 34-71 42-84 (365)
462 PRK14738 gmk guanylate kinase; 92.1 0.19 4.1E-06 37.1 3.4 23 32-54 13-35 (206)
463 PRK01184 hypothetical protein; 92.1 0.24 5.1E-06 35.6 3.9 29 34-67 3-31 (184)
464 PRK09376 rho transcription ter 92.1 0.32 7E-06 39.7 4.9 41 29-71 167-209 (416)
465 TIGR00150 HI0065_YjeE ATPase, 92.1 0.17 3.7E-06 34.9 2.9 27 31-58 22-48 (133)
466 PRK13891 conjugal transfer pro 92.0 0.31 6.7E-06 43.7 5.3 40 36-75 492-531 (852)
467 PRK13900 type IV secretion sys 92.0 0.16 3.6E-06 40.4 3.2 33 34-68 162-194 (332)
468 PRK05057 aroK shikimate kinase 92.0 0.16 3.5E-06 36.4 2.9 32 33-71 6-37 (172)
469 PRK10078 ribose 1,5-bisphospho 92.0 0.16 3.4E-06 36.8 2.8 22 34-55 4-25 (186)
470 PRK05800 cobU adenosylcobinami 91.9 0.22 4.8E-06 35.7 3.5 34 34-71 3-36 (170)
471 cd00881 GTP_translation_factor 91.9 0.32 7E-06 34.4 4.4 30 38-68 5-34 (189)
472 TIGR02525 plasmid_TraJ plasmid 91.9 0.35 7.7E-06 39.1 5.0 36 34-69 151-187 (372)
473 smart00487 DEXDc DEAD-like hel 91.9 0.3 6.5E-06 34.4 4.2 35 34-69 26-62 (201)
474 PRK13894 conjugal transfer ATP 91.9 0.24 5.3E-06 39.2 4.0 38 34-71 150-188 (319)
475 TIGR01448 recD_rel helicase, p 91.8 0.31 6.7E-06 42.9 4.9 34 34-68 340-375 (720)
476 COG1159 Era GTPase [General fu 91.8 0.28 6.2E-06 38.2 4.1 41 32-81 7-47 (298)
477 PRK00440 rfc replication facto 91.7 0.34 7.4E-06 37.7 4.6 35 36-71 42-76 (319)
478 PRK00300 gmk guanylate kinase; 91.6 0.18 3.8E-06 36.9 2.8 25 31-56 5-29 (205)
479 COG4962 CpaF Flp pilus assembl 91.6 0.16 3.6E-06 40.4 2.7 32 35-68 176-207 (355)
480 PRK00023 cmk cytidylate kinase 91.6 0.26 5.6E-06 37.0 3.7 25 32-56 4-28 (225)
481 PF01745 IPT: Isopentenyl tran 91.5 0.46 1E-05 35.6 4.8 35 31-70 1-35 (233)
482 COG0771 MurD UDP-N-acetylmuram 91.5 0.31 6.6E-06 40.4 4.3 32 31-66 110-141 (448)
483 PRK08356 hypothetical protein; 91.5 0.24 5.3E-06 36.1 3.5 26 34-64 7-32 (195)
484 cd02022 DPCK Dephospho-coenzym 91.5 0.23 4.9E-06 35.7 3.3 30 36-72 3-32 (179)
485 PF05673 DUF815: Protein of un 91.5 0.39 8.5E-06 36.6 4.6 48 31-81 52-99 (249)
486 TIGR03263 guanyl_kin guanylate 91.5 0.2 4.2E-06 35.8 2.9 24 32-56 2-25 (180)
487 PLN02748 tRNA dimethylallyltra 91.5 0.27 5.8E-06 41.0 4.0 38 27-71 18-55 (468)
488 TIGR00635 ruvB Holliday juncti 91.5 0.19 4.2E-06 39.0 3.1 23 35-57 33-55 (305)
489 TIGR03744 traC_PFL_4706 conjug 91.4 0.34 7.4E-06 43.7 4.9 38 37-74 480-517 (893)
490 COG0542 clpA ATP-binding subun 91.4 0.13 2.8E-06 45.3 2.1 51 34-85 523-575 (786)
491 PF07088 GvpD: GvpD gas vesicl 91.4 0.6 1.3E-05 38.2 5.7 47 31-80 10-56 (484)
492 PRK10865 protein disaggregatio 91.4 0.35 7.7E-06 43.4 4.9 38 34-72 600-637 (857)
493 COG1110 Reverse gyrase [DNA re 91.4 0.33 7.2E-06 43.8 4.6 36 31-68 97-132 (1187)
494 PLN02318 phosphoribulokinase/u 91.3 0.2 4.4E-06 43.0 3.2 37 31-72 64-100 (656)
495 COG1160 Predicted GTPases [Gen 91.2 5.9 0.00013 32.9 11.2 103 32-162 4-108 (444)
496 CHL00122 secA preprotein trans 91.1 0.17 3.8E-06 44.9 2.7 31 40-71 97-127 (870)
497 PRK08099 bifunctional DNA-bind 91.1 0.24 5.2E-06 40.5 3.3 28 28-56 216-243 (399)
498 PF00406 ADK: Adenylate kinase 91.1 0.16 3.5E-06 35.3 2.0 19 39-57 3-21 (151)
499 TIGR00152 dephospho-CoA kinase 91.1 0.21 4.6E-06 36.1 2.7 31 36-72 3-33 (188)
500 PF08303 tRNA_lig_kinase: tRNA 91.0 0.18 3.9E-06 36.0 2.2 20 38-57 5-24 (168)
No 1
>PRK11670 antiporter inner membrane protein; Provisional
Probab=99.96 E-value=3.4e-28 Score=193.70 Aligned_cols=155 Identities=46% Similarity=0.762 Sum_probs=108.6
Q ss_pred eeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC
Q 030973 7 IFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP 86 (168)
Q Consensus 7 ~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~ 86 (168)
+.+.++.++++..+. ..++..++|+|+|+|||+||||+|+|||..||+ .|+||++||+|+++|+++.+||.....
T Consensus 87 ~~~~~~~~~~~~~~~----~~~~~~~vIaV~S~KGGVGKTT~avNLA~aLA~-~G~rVlLID~D~qgps~~~~lg~~~~~ 161 (369)
T PRK11670 87 LSHNIATLKRVNNQP----GVNGVKNIIAVSSGKGGVGKSSTAVNLALALAA-EGAKVGILDADIYGPSIPTMLGAEDQR 161 (369)
T ss_pred Eeeehhhhccccccc----cCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCCCCCCCcchhcCCcccC
Confidence 345566666654433 256668999999999999999999999999999 999999999999999999999875432
Q ss_pred -CccccCceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHH-hhcCCCCcEEEEeCCCCCCHHHHHHHhhccc
Q 030973 87 -EVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSR-EVDWGNLDILVIDMPPGTGDAQLTTTQTLQL 164 (168)
Q Consensus 87 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~l~~~~yD~IiiD~p~~~~~~~~~~~~~~~~ 164 (168)
...+...+.+....++...+.+.+........+.+......+.+++. .+. ++||||||||||++++..+.+.+.++.
T Consensus 162 ~~~~~~~~i~p~~~~g~~~~~~~~l~~~~~~~i~~g~~~~~~l~~~l~~~~~-~~yDyvIID~PPg~gd~~l~~~~l~aa 240 (369)
T PRK11670 162 PTSPDGTHMAPIMAHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLW-PDLDYLVLDMPPGTGDIQLTLAQNIPV 240 (369)
T ss_pred CcccCCceeeeeeccCcccccHHHhcCcCcceeecCcchHHHHHHHHHHHhh-ccCCEEEEeCCCCCchHHHHHhhhccC
Confidence 11122223332223333333333322223334455555567777774 444 889999999999999988888787777
Q ss_pred CCC
Q 030973 165 SGI 167 (168)
Q Consensus 165 ~~~ 167 (168)
|++
T Consensus 241 d~v 243 (369)
T PRK11670 241 TGA 243 (369)
T ss_pred CeE
Confidence 765
No 2
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=4e-28 Score=181.53 Aligned_cols=149 Identities=49% Similarity=0.791 Sum_probs=131.6
Q ss_pred cccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceee-
Q 030973 18 AAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVP- 96 (168)
Q Consensus 18 ~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~- 96 (168)
.++......+.+-.++|+|.|+||||||||+++|||+.||. .|++|.++|.|...|++..++|.+.+.-........+
T Consensus 34 ~~~~~~~~~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~-~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv 112 (300)
T KOG3022|consen 34 PDIPAKQENLSGVKHIILVLSGKGGVGKSTVTVNLALALAS-EGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPV 112 (300)
T ss_pred CCcccccccccccceEEEEEeCCCCCchhHHHHHHHHHHhc-CCCcEEEEeecccCCCchhhcCCCCceeeecCCCceee
Confidence 33444444677788999999999999999999999999999 9999999999999999999999998875555555555
Q ss_pred cccCCeeeeecCccCCC-CCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhhccc-CCC
Q 030973 97 IENYGVKCMSMGFLVPS-SSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQL-SGI 167 (168)
Q Consensus 97 ~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~~~~-~~~ 167 (168)
...+++.+++.|++..+ +....|+++.....+.+++....|.+.||+|||||||.+|+++.+.+.+.. +|+
T Consensus 113 ~~~~~l~~mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gA 185 (300)
T KOG3022|consen 113 VVNKNLKLMSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGA 185 (300)
T ss_pred eecCCeEEEEeeeecCCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhhhheeecccccCce
Confidence 66789999999999887 667889999999999999999999999999999999999999999999987 764
No 3
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.94 E-value=6.1e-27 Score=180.19 Aligned_cols=138 Identities=20% Similarity=0.249 Sum_probs=110.3
Q ss_pred CceeeeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCccccccc
Q 030973 3 NSFRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKI 82 (168)
Q Consensus 3 ~~~~~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~ 82 (168)
+..++.|.||.+|+++.+... ++..++|+|+|++||+||||+|.|||..+|+ .|+|||+||+|++++.++..|+.
T Consensus 79 ~~~~~~e~~~~l~~~l~~~~~----~~~~~vi~vts~~~g~Gktt~a~nLA~~la~-~g~~VllID~D~~~~~~~~~~~~ 153 (274)
T TIGR03029 79 PFSPQVEALRALRSQLMLRWF----SEGRKALAVVSAKSGEGCSYIAANLAIVFSQ-LGEKTLLIDANLRDPVQHRNFKL 153 (274)
T ss_pred CCCHHHHHHHHHHHHhhhhcc----CCCCeEEEEECCCCCCCHHHHHHHHHHHHHh-cCCeEEEEeCCCCCccHHHhcCC
Confidence 345678999999999999864 3348999999999999999999999999999 99999999999999999999998
Q ss_pred CCCCCcccc-------Cceee-cccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973 83 DQKPEVTKD-------MKMVP-IENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT 151 (168)
Q Consensus 83 ~~~~~~~~~-------~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~ 151 (168)
+...++.+. +.+.. ....+++++|.|........ ......+.++++.++ +.||||||||||..
T Consensus 154 ~~~~gl~~~l~~~~~~~~i~~~~~~~~l~~lp~g~~~~~~~~-----~~~~~~~~~~l~~l~-~~yD~ViiD~pp~~ 224 (274)
T TIGR03029 154 SEQRGLSDILAGRSDLEVITHIPALENLSVLPAGAIPPNPQE-----LLARPAFTDLLNKVM-GDYDVVIVDTPSAE 224 (274)
T ss_pred CCCCCHHHHhCCCCCHHHeeecCCCCCEEEEeCcCCCCCHHH-----HhCcHHHHHHHHHHH-hcCCEEEEeCCCcc
Confidence 877776552 11222 23468999998865432221 122357888899998 89999999999975
No 4
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.94 E-value=1.2e-26 Score=171.90 Aligned_cols=145 Identities=24% Similarity=0.304 Sum_probs=109.0
Q ss_pred CceeeeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCccccccc
Q 030973 3 NSFRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKI 82 (168)
Q Consensus 3 ~~~~~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~ 82 (168)
+.+.+.|.++.+|+++.........++.+++|+|+|+|||+||||+++|||+.||+..|+|||+||+|++.++++..++.
T Consensus 7 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~ 86 (207)
T TIGR03018 7 PRSRIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGL 86 (207)
T ss_pred CCCHHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCC
Confidence 44567789999999988544322334568999999999999999999999999996259999999999999999999998
Q ss_pred CCCCCcccc---------CceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCC--cEEEEeCCCCC
Q 030973 83 DQKPEVTKD---------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNL--DILVIDMPPGT 151 (168)
Q Consensus 83 ~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~y--D~IiiD~p~~~ 151 (168)
....++.+. +.+......+++++|.+........ ......+.++++.++ ++| |||||||||++
T Consensus 87 ~~~~~l~~~l~~~~~~l~~~i~~~~~~~l~vl~~g~~~~~~~~-----~~~~~~l~~~l~~l~-~~y~~D~IiiD~pp~~ 160 (207)
T TIGR03018 87 EAEPGLSDCLLDPVLDLADVLVPTNIGRLSLLPAGRRHPNPTE-----LLASQRMRSLLHELA-RRYPDRIIIIDTPPLL 160 (207)
T ss_pred CCCCCHHHHHcCCCCCHHHHhccCCCCCEEEEeCCCCCCCHHH-----HhCcHHHHHHHHHHH-hhCCCCEEEEECCCCc
Confidence 876665441 1122223468899987744322111 123467888888888 778 99999999998
Q ss_pred CH
Q 030973 152 GD 153 (168)
Q Consensus 152 ~~ 153 (168)
+.
T Consensus 161 ~~ 162 (207)
T TIGR03018 161 VF 162 (207)
T ss_pred ch
Confidence 53
No 5
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.93 E-value=7e-26 Score=173.20 Aligned_cols=152 Identities=41% Similarity=0.592 Sum_probs=118.8
Q ss_pred eeeeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC
Q 030973 5 FRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (168)
Q Consensus 5 ~~~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~ 84 (168)
..+.|.++.++.++++..... .+..++|+|+|+|||+||||+++|||..+|+ .|+||++||+|..+|+++.+|+...
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~I~V~S~kgGvGKStva~nLA~alA~-~G~rVlliDaD~~gps~~~~l~~~~ 109 (265)
T COG0489 33 STASEALRALRTNLKFAKVLR--KGVKNVIAVTSGKGGVGKSTVAVNLAAALAQ-LGKRVLLLDADLRGPSIPRMLGLEN 109 (265)
T ss_pred chhhhhhhhhhcchhhhhccc--cccceEEEEEeCCCCCcHHHHHHHHHHHHHh-cCCcEEEEeCcCCCCchHHHhCCCC
Confidence 345677888888766665432 3458999999999999999999999999999 9999999999999999999999976
Q ss_pred CCCccc---cCceee---cc-cCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHH
Q 030973 85 KPEVTK---DMKMVP---IE-NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT 157 (168)
Q Consensus 85 ~~~~~~---~~~~~~---~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~ 157 (168)
..++.+ ...+.+ .. ...+++++.+. ....+++......+.+++.+++|..||||||||||+.++..+.
T Consensus 110 ~~g~~~~~~g~~~~~~~~~~~~~~lsi~~~~~-----~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~ 184 (265)
T COG0489 110 LPGLTELLAGEALEPVIQHDGIKVLSILPLGP-----VPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADAT 184 (265)
T ss_pred CCCcccccCCCccccceecCccceEEEEecCC-----CCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHH
Confidence 443332 111222 22 34556666553 4455667888999999999999666999999999999999998
Q ss_pred HHhhccc
Q 030973 158 TTQTLQL 164 (168)
Q Consensus 158 ~~~~~~~ 164 (168)
.++.+.-
T Consensus 185 i~~~~~~ 191 (265)
T COG0489 185 VLQRIPD 191 (265)
T ss_pred HHhccCC
Confidence 8887763
No 6
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.93 E-value=5.6e-26 Score=167.88 Aligned_cols=129 Identities=23% Similarity=0.312 Sum_probs=100.9
Q ss_pred eecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC-CCC
Q 030973 9 TRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ-KPE 87 (168)
Q Consensus 9 e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~-~~~ 87 (168)
|.||.+|+++.+.... +|+|+|+|.|||+||||++.|||..+|+ .|+|||+||+|++.+.++..++... ..+
T Consensus 1 ~~~~~l~~~l~~~~~~------~kvI~v~s~kgG~GKTt~a~~LA~~la~-~G~rVllID~D~~~~~l~~~~~~~~~~~~ 73 (204)
T TIGR01007 1 EYYNAIRTNIQFSGAE------IKVLLITSVKPGEGKSTTSANIAVAFAQ-AGYKTLLIDGDMRNSVMSGTFKSQNKITG 73 (204)
T ss_pred ChHHHHHHHHhhhcCC------CcEEEEecCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCCCChhHHHHhCCCCCCCC
Confidence 6799999999988754 8999999999999999999999999999 9999999999999999888887665 444
Q ss_pred cccc--------CceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCC
Q 030973 88 VTKD--------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPG 150 (168)
Q Consensus 88 ~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~ 150 (168)
+.+. ..+......++++++.+...+.... ......+.++++.++ +.||||||||||.
T Consensus 74 l~~~l~~~~~l~~~i~~~~~~~l~~l~~g~~~~~~~~-----~l~~~~l~~~l~~l~-~~yD~ViiD~pp~ 138 (204)
T TIGR01007 74 LTNFLSGTTDLSDAICDTNIENLFVITSGPVPPNPTE-----LLQSSNFKTLIETLR-KYFDYIIIDTPPI 138 (204)
T ss_pred HHHHhcCCCCHHHhcccCCCCCEEEEeCCCCCCCHHH-----HhCcHHHHHHHHHHH-hcCCEEEEeCCCc
Confidence 4331 1122223368899988754322111 123456788888888 8999999999994
No 7
>PRK11519 tyrosine kinase; Provisional
Probab=99.92 E-value=2.6e-25 Score=190.43 Aligned_cols=135 Identities=16% Similarity=0.242 Sum_probs=113.0
Q ss_pred eeeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC
Q 030973 6 RIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK 85 (168)
Q Consensus 6 ~~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~ 85 (168)
.+.|.+|.+|+++.|.... ...++|+|+|.+||+||||++.|||..+|+ .|+|||+||+|+++|+++.+|+....
T Consensus 505 ~~~Ea~r~lrt~l~~~~~~----~~~kvi~vts~~~geGKTt~a~nLA~~la~-~g~rvLlID~Dlr~~~~~~~~~~~~~ 579 (719)
T PRK11519 505 LAIEAIRSLRTSLHFAMMQ----AQNNVLMMTGVSPSIGKTFVCANLAAVISQ-TNKRVLLIDCDMRKGYTHELLGTNNV 579 (719)
T ss_pred HHHHHHHHHHHHhhhhccC----CCceEEEEECCCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCCCCCCcHHHHhCCCCC
Confidence 4569999999999997743 347999999999999999999999999999 99999999999999999999998887
Q ss_pred CCcccc--------CceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973 86 PEVTKD--------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT 151 (168)
Q Consensus 86 ~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~ 151 (168)
.++.+. ..+......+++++|.|..++.+.. ......+.++++.++ .+||||||||||.+
T Consensus 580 ~gl~~~l~~~~~l~~~i~~~~~~~l~~lp~g~~~~~~~e-----ll~s~~~~~ll~~l~-~~yD~ViiDtpP~~ 647 (719)
T PRK11519 580 NGLSDILIGQGDITTAAKPTSIANFDLIPRGQVPPNPSE-----LLMSERFAELVNWAS-KNYDLVLIDTPPIL 647 (719)
T ss_pred CCHHHHhCCCCCHHHhecccCcCCEEEEeCCCCCCCHHH-----HhhHHHHHHHHHHHH-hcCCEEEEeCCCcc
Confidence 777652 2234445589999999865544332 345678999999999 89999999999965
No 8
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.92 E-value=4.2e-25 Score=190.45 Aligned_cols=140 Identities=14% Similarity=0.077 Sum_probs=112.1
Q ss_pred ceeeeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973 4 SFRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID 83 (168)
Q Consensus 4 ~~~~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~ 83 (168)
...+.|.+|.+|+++.+...+ ...++|+|+|.+||+||||+|+|||+.+|+ .|+|||+||+|+++|+++..|+..
T Consensus 523 ~s~~~Ea~r~lr~~l~~~~~~----~~~kvi~vts~~~G~GKTt~a~nLA~~lA~-~g~rvLlID~D~~~~~l~~~~~~~ 597 (754)
T TIGR01005 523 RPVAEEELRVKEEAVAEAKSV----AEPEVVETQRPRPVLGKSDIEANAAALIAS-GGKRALLIDADGRKAALSQILVAR 597 (754)
T ss_pred CCcchHHHHHHHHHHhhhccC----CCceEEEeecCCCCCChhHHHHHHHHHHHh-CCCeEEEEeCCCCchhHHHHhCCc
Confidence 356789999999999988754 347999999999999999999999999999 999999999999999999999988
Q ss_pred CCCCcccc--------CceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHH
Q 030973 84 QKPEVTKD--------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA 154 (168)
Q Consensus 84 ~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~ 154 (168)
...++.+. ..+......+++++|.|.....+.. ......+.++++.++ +.||||||||||.++..
T Consensus 598 ~~~gl~~~l~~~~~~~~~i~~~~~~~l~~l~~g~~~~~~~~-----ll~~~~~~~~l~~l~-~~yD~IiID~pp~~~~~ 670 (754)
T TIGR01005 598 EVSGLLDLLAGLRSLLLDLTASGAASLPMLDSGLFPHGITE-----LLASPAMFSLVIHAR-LYSDCVVVDVGTADPVR 670 (754)
T ss_pred ccCChHHHHcCCccHHHHhccCCCCCeeEecCCCCCCCHHH-----HhccHHHHHHHHHHH-hhCCEEEEcCCCcchhH
Confidence 77766542 2233344578999998854332221 123456788888888 89999999999987533
No 9
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.92 E-value=4.9e-25 Score=188.96 Aligned_cols=137 Identities=15% Similarity=0.269 Sum_probs=111.8
Q ss_pred eeeeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC
Q 030973 5 FRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (168)
Q Consensus 5 ~~~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~ 84 (168)
..+.|.+|.+|+++.|...+ ...++|+|+|.+||+||||+|+|||..+|. .|+|||+||+|+++|.++..|+...
T Consensus 509 s~~~Ea~r~lrt~l~~~~~~----~~~kvI~vtS~~~g~GKTtva~nLA~~la~-~G~rVLlID~D~r~~~l~~~~~~~~ 583 (726)
T PRK09841 509 DSAVEAVRALRTSLHFAMME----TENNILMITGATPDSGKTFVSSTLAAVIAQ-SDQKVLFIDADLRRGYSHNLFTVSN 583 (726)
T ss_pred CHHHHHHHHHHHHhhhhccC----CCCeEEEEecCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCcHHHHcCCCC
Confidence 34569999999999997643 348999999999999999999999999999 9999999999999999999999887
Q ss_pred CCCcccc--------CceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973 85 KPEVTKD--------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG 152 (168)
Q Consensus 85 ~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~ 152 (168)
..++.+. +.+.+....+++++|.|..++.+.. ......+.++++.++ ++||||||||||.+.
T Consensus 584 ~~gl~~~l~~~~~~~~~i~~~~~~~l~vl~~g~~~~~p~e-----ll~~~~~~~ll~~l~-~~yD~IIIDtPP~~~ 653 (726)
T PRK09841 584 EHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSE-----LLMRDRMRQLLEWAN-DHYDLVIVDTPPMLA 653 (726)
T ss_pred CCCHHHHhCCCCCHHHheeccCCCCEEEEeCCCCCCCHHH-----HhCcHHHHHHHHHHH-hcCCEEEEeCCCccc
Confidence 7776552 2233444578999999865543332 233468899999998 899999999999763
No 10
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.91 E-value=1.9e-24 Score=174.30 Aligned_cols=129 Identities=25% Similarity=0.268 Sum_probs=90.4
Q ss_pred CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCC------ccc-----------
Q 030973 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPE------VTK----------- 90 (168)
Q Consensus 28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~------~~~----------- 90 (168)
+.++++|+|.|.|||+||||+|+|||..||+ .|+|||+||+|+|+ +++..||..+... +.+
T Consensus 118 ~~~~~vIav~n~KGGvGKTTta~nLA~~LA~-~G~rVLlIDlDpQ~-~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~ 195 (405)
T PRK13869 118 SEHLQVIAVTNFKGGSGKTTTSAHLAQYLAL-QGYRVLAVDLDPQA-SLSALLGVLPETDVGANETLYAAIRYDDTRRPL 195 (405)
T ss_pred CCCceEEEEEcCCCCCCHHHHHHHHHHHHHh-cCCceEEEcCCCCC-CHHHHcCCCccccccccccHHHHHhccccCCCH
Confidence 4468999999999999999999999999999 99999999999985 7888888654321 110
Q ss_pred cCceeecccCCeeeeecCccCCCCCC--------cccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHH
Q 030973 91 DMKMVPIENYGVKCMSMGFLVPSSSP--------VVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT 159 (168)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~ 159 (168)
...+.+...++++++|.+.....-.. ...........+.+.++.++ ++||||||||||+++..+++++
T Consensus 196 ~~~i~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~-~~yD~IiIDtpP~l~~~t~~al 271 (405)
T PRK13869 196 RDVIRPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVA-DDYDVVVIDCPPQLGFLTLSGL 271 (405)
T ss_pred HHheeccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhh-ccCCEEEEECCCchhHHHHHHH
Confidence 01223344568888886532110000 00011112245778888888 8999999999999887766554
No 11
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.90 E-value=1.4e-23 Score=159.04 Aligned_cols=121 Identities=30% Similarity=0.429 Sum_probs=89.6
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC-CCcccc-------CceeecccCCee
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-PEVTKD-------MKMVPIENYGVK 103 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~ 103 (168)
++|+|+|+|||+||||+|+|||+.|++ .|+||++||+|+++++++.++|.+.. .++.+. .........+++
T Consensus 1 ~ii~v~~~KGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (251)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAK-LGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPFGVK 79 (251)
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEeCCCCEE
Confidence 489999999999999999999999999 99999999999998899999987653 222221 111112235788
Q ss_pred eeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973 104 CMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ 160 (168)
Q Consensus 104 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~ 160 (168)
++|.+...... .......+.++++.++ ++||||||||||+++.....++.
T Consensus 80 ~lp~~~~~~~~------~~~~~~~l~~~l~~l~-~~yD~VIiD~p~~~~~~~~~~l~ 129 (251)
T TIGR01969 80 VIPAGVSLEGL------RKADPDKLEDVLKEII-DDTDFLLIDAPAGLERDAVTALA 129 (251)
T ss_pred EEeCCCCHHHH------hhcCHHHHHHHHHHHH-hhCCEEEEeCCCccCHHHHHHHH
Confidence 88865321110 0112456778888887 89999999999999887776554
No 12
>PRK10037 cell division protein; Provisional
Probab=99.90 E-value=6.6e-24 Score=161.41 Aligned_cols=126 Identities=13% Similarity=0.149 Sum_probs=83.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC--Cccc-------c-CceeecccC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTK-------D-MKMVPIENY 100 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~--~~~~-------~-~~~~~~~~~ 100 (168)
|++|+|.|.|||+||||+|+|||..|++ .|+|||+||+|+|+ ++...||..... ++.+ . +.+.+ ...
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~-~G~rVLlID~D~q~-~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 77 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQM-LGENVLVIDACPDN-LLRLSFNVDFTHRQGWARALLDGQDWRDAGLR-YTS 77 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHh-cCCcEEEEeCChhh-hHHHHhCCCccccchHHHHHhcCCCchhhhcc-ccC
Confidence 5799999999999999999999999999 99999999999986 667777765322 1111 1 11122 236
Q ss_pred CeeeeecCccCCCCCCcccCch-hHHHHHHHHHHhhcC-CCCcEEEEeCCCCCCHHHHHHHh
Q 030973 101 GVKCMSMGFLVPSSSPVVWRGP-MVMSALRKMSREVDW-GNLDILVIDMPPGTGDAQLTTTQ 160 (168)
Q Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~l~~-~~yD~IiiD~p~~~~~~~~~~~~ 160 (168)
+++++|.+......... .... .....+.+.++.++. ++||||||||||+++..+..++.
T Consensus 78 ~l~iip~~~~~~~~~~~-~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~~~~~al~ 138 (250)
T PRK10037 78 QLDLLPFGQLSIEEQEN-PQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASPLTRQLLS 138 (250)
T ss_pred CeEEEcCCCCCHHHHHH-HHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccHHHHHHHH
Confidence 78888875221111000 0000 011235566666642 47999999999998877665544
No 13
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.90 E-value=8.9e-24 Score=169.25 Aligned_cols=130 Identities=25% Similarity=0.226 Sum_probs=90.1
Q ss_pred CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC-CCCCCCcccccccCCCCCcc------c---------c
Q 030973 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA-DVYGPSVPMMMKIDQKPEVT------K---------D 91 (168)
Q Consensus 28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~-D~~~~~l~~~~~~~~~~~~~------~---------~ 91 (168)
.+++++|+|.|.||||||||+|+|||..||+ .|+|||+||+ |+|+ +++.+||..+...+. + .
T Consensus 103 ~~~~~vIav~n~KGGVGKTTta~nLA~~LA~-~G~rVLlIDl~DpQ~-nlt~~~g~~~~~~~~~~~tl~~~~~~~~~~~~ 180 (387)
T PHA02519 103 DKNPVVLAVMSHKGGVYKTSSAVHTAQWLAL-QGHRVLLIEGNDPQG-TASMYHGYVPDLHIHADDTLLPFYLGERDNAE 180 (387)
T ss_pred CCCceEEEEecCCCCCcHHHHHHHHHHHHHh-CCCcEEEEeCCCCCC-CcccccCcCccccccccccHHHHHhCCCcchH
Confidence 4458999999999999999999999999999 9999999996 9987 667777765432111 1 1
Q ss_pred CceeecccCCeeeeecCccCCCC-------CCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973 92 MKMVPIENYGVKCMSMGFLVPSS-------SPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ 160 (168)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~ 160 (168)
..+.+...++++++|.+...... .............+.+.++.+. ++||||||||||+++..+.+++-
T Consensus 181 ~~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~-~~YD~IlID~pPslg~lt~nAL~ 255 (387)
T PHA02519 181 YAIKPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVW-DNYDIIVIDSAPNLGTGTINVVC 255 (387)
T ss_pred hheecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhh-ccCCEEEEECCCCccHHHHHHHH
Confidence 12233445789999876321100 0000000011245777788887 89999999999999877665543
No 14
>CHL00175 minD septum-site determining protein; Validated
Probab=99.90 E-value=4.5e-23 Score=159.26 Aligned_cols=125 Identities=19% Similarity=0.343 Sum_probs=93.2
Q ss_pred cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC--Ccccc--------Cceee
Q 030973 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTKD--------MKMVP 96 (168)
Q Consensus 27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~--~~~~~--------~~~~~ 96 (168)
.++.+++|+|+|+|||+||||+|+|||+.|++ .|+||++||+|++.++++.+|+..... ++.+. ..+..
T Consensus 11 ~~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~-~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~ 89 (281)
T CHL00175 11 SATMSRIIVITSGKGGVGKTTTTANLGMSIAR-LGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIR 89 (281)
T ss_pred cCCCceEEEEEcCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheee
Confidence 45568999999999999999999999999999 999999999999988999999887532 22221 11112
Q ss_pred -cccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCC-CCcEEEEeCCCCCCHHHHHHHh
Q 030973 97 -IENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWG-NLDILVIDMPPGTGDAQLTTTQ 160 (168)
Q Consensus 97 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~yD~IiiD~p~~~~~~~~~~~~ 160 (168)
...++++++|.+... ... ......+.++++.++ . .||||||||||+++.....++.
T Consensus 90 ~~~~~~l~~l~~~~~~---~~~----~~~~~~l~~~l~~l~-~~~yD~VIiDtpp~~~~~~~~~l~ 147 (281)
T CHL00175 90 DKRWKNLSLLAISKNR---QRY----NVTRKNMNMLVDSLK-NRGYDYILIDCPAGIDVGFINAIA 147 (281)
T ss_pred cCCCCCeEEEeCCCch---hhc----cCCHHHHHHHHHHHH-hCCCCEEEEeCCCCCCHHHHHHHH
Confidence 224678888875321 111 112346888888887 6 8999999999999877665553
No 15
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.90 E-value=2.8e-23 Score=151.23 Aligned_cols=123 Identities=24% Similarity=0.313 Sum_probs=95.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCc--cc---cCc------eeeccc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEV--TK---DMK------MVPIEN 99 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~--~~---~~~------~~~~~~ 99 (168)
.++|.++|+|||+||||+++|++..||+ .|+||++||+|..-.+|...+|++...-+ .+ ..+ +.....
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~-~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~ 80 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQ-LGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRL 80 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHH-cCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccC
Confidence 6899999999999999999999999999 99999999999999999999998876322 11 111 223334
Q ss_pred CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT 161 (168)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~ 161 (168)
.++.++|+.+.-..+ ....+.+..++++|+...|||||||||+|+......++..
T Consensus 81 ~nL~lLPAsQtrdKd-------alt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G~~~A~~~ 135 (272)
T COG2894 81 ENLFLLPASQTRDKD-------ALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQGFKNAVYF 135 (272)
T ss_pred CceEecccccccCcc-------cCCHHHHHHHHHHHHhcCCCEEEecCcchHHHHHHhhhhc
Confidence 678888776432211 2456888999999886789999999999997776655443
No 16
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.90 E-value=1.4e-23 Score=168.38 Aligned_cols=131 Identities=24% Similarity=0.214 Sum_probs=89.2
Q ss_pred cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC-CCCCCCcccccccCCCC------Cccc---------
Q 030973 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA-DVYGPSVPMMMKIDQKP------EVTK--------- 90 (168)
Q Consensus 27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~-D~~~~~l~~~~~~~~~~------~~~~--------- 90 (168)
.+..+++|+|.|.||||||||+|+|||..||+ .|+|||+||+ |+|+ +++..||..+.. ++.+
T Consensus 102 ~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~-~G~rVLlID~~DpQ~-nlt~~~g~~~~~~~~~~~~l~~~~~~~~~~~ 179 (388)
T PRK13705 102 EDVFPPVIGVAAHKGGVYKTSVSVHLAQDLAL-KGLRVLLVEGNDPQG-TASMYHGWVPDLHIHAEDTLLPFYLGEKDDA 179 (388)
T ss_pred CCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-cCCCeEEEcCCCCCC-chhhhcCcCccccccccccHHHHHhcCCCch
Confidence 34568999999999999999999999999999 9999999996 9987 566677654321 1110
Q ss_pred cCceeecccCCeeeeecCccCCCC-------CCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973 91 DMKMVPIENYGVKCMSMGFLVPSS-------SPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ 160 (168)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~ 160 (168)
...+.+...++++++|.+...... .............+.+.++.++ ++||||||||||+++..+.+++.
T Consensus 180 ~~~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~-~~YD~IiIDtpP~l~~~t~nal~ 255 (388)
T PRK13705 180 TYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA-HDYDVIVIDSAPNLGIGTINVVC 255 (388)
T ss_pred hhheecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhh-ccCCEEEEECCCchhHHHHHHHH
Confidence 112333445789999875321100 0000000011235677778887 89999999999998777665543
No 17
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.89 E-value=5.2e-23 Score=158.35 Aligned_cols=118 Identities=26% Similarity=0.256 Sum_probs=82.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc-----------cCceeeccc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-----------DMKMVPIEN 99 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~ 99 (168)
||+|+|+ +||||||||+++|||..||+ .|+|||+||+|++.++...++|.....++.+ ...+.....
T Consensus 1 ~~~iav~-gKGGVGKTT~a~nLA~~La~-~G~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~~~ 78 (273)
T PRK13232 1 MRQIAIY-GKGGIGKSTTTQNLTAALST-MGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPGF 78 (273)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHh-hCCCeEEEecccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEeCC
Confidence 4799999 99999999999999999999 9999999999999988887776433333222 111222334
Q ss_pred CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG 152 (168)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~ 152 (168)
.+++++|.+..... ......+......+.+.++.+. ++|||||||||+++.
T Consensus 79 ~~i~~i~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~-~~yD~vlID~~~~~~ 129 (273)
T PRK13232 79 GDIKCVESGGPEPG-VGCAGRGIITSIGLLENLGAYT-DDLDYVFYDVLGDVV 129 (273)
T ss_pred CCeEEEeCCCCCCC-CCCCCCchhHHHHHHHHccccc-ccCCEEEEecCCCee
Confidence 68889987642221 1111222222335666677666 889999999988763
No 18
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.89 E-value=1e-22 Score=156.36 Aligned_cols=122 Identities=20% Similarity=0.322 Sum_probs=90.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC--Cccc--------cCceee-ccc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTK--------DMKMVP-IEN 99 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~--~~~~--------~~~~~~-~~~ 99 (168)
+++|+|+|+|||+||||+|+|||+.|++ .|+||++||+|++.++++.+||.+... ++.+ .+.+.. ...
T Consensus 2 ~kviav~s~KGGvGKTt~a~nlA~~la~-~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (270)
T PRK10818 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQ-KGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (270)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCc
Confidence 6899999999999999999999999999 999999999999988999999876432 2211 011111 124
Q ss_pred CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ 160 (168)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~ 160 (168)
.+++++|.+.... . .......+.++++.++...||||||||||+++...+.++.
T Consensus 81 ~~~~~lp~~~~~~--~-----~~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~~~~~~l~ 134 (270)
T PRK10818 81 ENLYILPASQTRD--K-----DALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMALY 134 (270)
T ss_pred CCEEEecCCCCcc--h-----hhhCHHHHHHHHHHHhhcCCCEEEEeCCCCccHHHHHHHH
Confidence 6788888764321 1 1123345677888776247999999999999887776653
No 19
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.89 E-value=4.2e-23 Score=156.24 Aligned_cols=127 Identities=24% Similarity=0.257 Sum_probs=87.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC--Ccccc-------CceeecccCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTKD-------MKMVPIENYG 101 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~--~~~~~-------~~~~~~~~~~ 101 (168)
+++|+|+|+|||+||||+|+|||..||+ .|+|||+||+|+++ +++..++..... ++.+. .........+
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~-~g~~VlliD~D~q~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 78 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKL-LGEPVLAIDLDPQN-LLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSDG 78 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHh-CCCcEEEEeCCCcc-hHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCCC
Confidence 5799999999999999999999999999 99999999999986 577778765432 12111 1111122467
Q ss_pred eeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973 102 VKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT 161 (168)
Q Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~ 161 (168)
++++|.+.......... .......++++++.++...||||||||||+++.....++..
T Consensus 79 l~~ip~~~~~~~~~~~~--~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~~~~~~l~~ 136 (246)
T TIGR03371 79 VLFLPFGDLSADEREAY--QAHDAGWLARLLQQLDLAARDWVLIDVPRGPSPITRQALAA 136 (246)
T ss_pred eEEecCCCCcHHHHHHH--hhcCHHHHHHHHHhcccCCCCEEEEECCCCchHHHHHHHHh
Confidence 88887653321111100 01123567778888763346999999999988877665543
No 20
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.89 E-value=2.8e-23 Score=166.91 Aligned_cols=129 Identities=25% Similarity=0.253 Sum_probs=89.0
Q ss_pred CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc-----------------
Q 030973 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK----------------- 90 (168)
Q Consensus 28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~----------------- 90 (168)
+..+++|+|+|.|||+||||+|+|||..|++ .|+|||+||+|+|+ +++..||..+..++.+
T Consensus 101 g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~-~G~rVLlID~DpQ~-~ls~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 178 (387)
T TIGR03453 101 GEHLQVIAVTNFKGGSGKTTTAAHLAQYLAL-RGYRVLAIDLDPQA-SLSALFGYQPEFDVGENETLYGAIRYDDERRPL 178 (387)
T ss_pred CCCceEEEEEccCCCcCHHHHHHHHHHHHHh-cCCCEEEEecCCCC-CHHHHcCCCcccccccCccHHHHHhccccccCH
Confidence 4558999999999999999999999999999 99999999999975 7888888654322110
Q ss_pred cCceeecccCCeeeeecCccCCCCC--------CcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHH
Q 030973 91 DMKMVPIENYGVKCMSMGFLVPSSS--------PVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT 159 (168)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~ 159 (168)
...+.+....+++++|.+.....-. ............+.+.++.+. ++||||||||||+++..+.+++
T Consensus 179 ~~~i~~~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~~al 254 (387)
T TIGR03453 179 SEIIRKTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVE-DDYDVVVIDCPPQLGFLTLSAL 254 (387)
T ss_pred HhhcccCCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH-hcCCEEEEeCCccHhHHHHHHH
Confidence 0122233446888888653210000 000000111245777888888 8999999999999877655543
No 21
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.89 E-value=2.4e-22 Score=158.04 Aligned_cols=123 Identities=28% Similarity=0.388 Sum_probs=94.8
Q ss_pred CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcc--cc------------Cc
Q 030973 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVT--KD------------MK 93 (168)
Q Consensus 28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~--~~------------~~ 93 (168)
...+++|+|+|+|||+||||+|+|||+.+++ .|+||++||+|++.+++..+||.+..+++. +. ..
T Consensus 90 ~~~~~vIav~~~KGGvGkTT~a~nLA~~la~-~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~ 168 (322)
T TIGR03815 90 PARGVVVAVIGGRGGAGASTLAAALALAAAR-HGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRD 168 (322)
T ss_pred CCCceEEEEEcCCCCCcHHHHHHHHHHHHHh-cCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHH
Confidence 4458999999999999999999999999999 999999999999999999999887655432 10 01
Q ss_pred eeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973 94 MVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT 161 (168)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~ 161 (168)
..+. ..++++++.+.... .......+.++++.++ +.||||||||||+++.....++..
T Consensus 169 ~~~~-~~~l~vl~~~~~~~--------~~~~~~~l~~~l~~l~-~~~D~VIID~p~~~~~~~~~~L~~ 226 (322)
T TIGR03815 169 ALPR-RGGLSVLSWGRAVG--------AALPPAAVRAVLDAAR-RGGDLVVVDLPRRLTPAAETALES 226 (322)
T ss_pred hCCC-cCCeEEEecCCCCc--------CCCCHHHHHHHHHHHH-hcCCEEEEeCCCCCCHHHHHHHHH
Confidence 1122 35788887654321 1133567888888888 899999999999998876665544
No 22
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.89 E-value=3.6e-23 Score=155.08 Aligned_cols=129 Identities=25% Similarity=0.252 Sum_probs=94.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC--CCccc-------cCceeecccCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK--PEVTK-------DMKMVPIENYG 101 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~--~~~~~-------~~~~~~~~~~~ 101 (168)
|++|++.|.|||+||||+++|||+.|++ .|++|++||+||++ .+...||++.. .++.. .....-....+
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~-~G~~VlaID~dpqN-~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g 78 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALAR-LGESVLAIDLDPQN-LLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDG 78 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCCcHH-HHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCC
Confidence 6899999999999999999999999999 99999999999987 88888987753 33321 11222334579
Q ss_pred eeeeecCccCCCCCCcccCchhHHHHHHHHHHhhc-CCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973 102 VKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVD-WGNLDILVIDMPPGTGDAQLTTTQT 161 (168)
Q Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-~~~yD~IiiD~p~~~~~~~~~~~~~ 161 (168)
+.++|.|.....+......-......+.+.+..+. ...||+|||||||+.+.....++..
T Consensus 79 ~~~LPfG~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~~~~~~al~~ 139 (243)
T PF06564_consen 79 VDFLPFGQLTEAEREAFEQLAQDPQWLARALAALKALGPYDWILIDTPPGPSPYTRQALAA 139 (243)
T ss_pred CEEEcCCCCCHHHHHHHHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCcHHHHHHHHh
Confidence 99999986654333211111112456666666666 4789999999999988776666553
No 23
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.89 E-value=1.7e-22 Score=150.22 Aligned_cols=115 Identities=27% Similarity=0.307 Sum_probs=78.3
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc------------cCceeeccc
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK------------DMKMVPIEN 99 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~------------~~~~~~~~~ 99 (168)
++|+|++ |||+||||+++|||..||+ .|+|||+||+|++.+....+++.....++.+ ...+.....
T Consensus 1 ~~iav~g-KGGvGKTt~~~nLA~~la~-~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T cd02117 1 RQIAIYG-KGGIGKSTTSQNLSAALAE-MGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGF 78 (212)
T ss_pred CEEEEEC-CCcCcHHHHHHHHHHHHHH-CCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEeCC
Confidence 4789985 9999999999999999999 9999999999999876666555443333221 112223345
Q ss_pred CCeeeeecCccCCCCCCcccCchhHH-HHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973 100 YGVKCMSMGFLVPSSSPVVWRGPMVM-SALRKMSREVDWGNLDILVIDMPPGT 151 (168)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~l~~~~yD~IiiD~p~~~ 151 (168)
.+++++|.+...+.... ...+.... ..++ .++.+. ++||||||||++.+
T Consensus 79 ~~l~vlp~~~~~~~~~~-~~~~~~~~~~~l~-~l~~~~-~~yD~ilID~~g~~ 128 (212)
T cd02117 79 GGVKCVESGGPEPGVGC-AGRGVITAVNLLE-KEGFAE-DDLDVVLYDVLGDV 128 (212)
T ss_pred CCcEEEeCCCCCCCccc-CCcchhhHHHHHH-hccccc-cCCCEEEEecCCCc
Confidence 78999998754433221 11211111 2233 555666 89999999997755
No 24
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.89 E-value=1.4e-22 Score=154.22 Aligned_cols=125 Identities=27% Similarity=0.361 Sum_probs=98.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCC-ccc--------cCceeecccCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPE-VTK--------DMKMVPIENYG 101 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~-~~~--------~~~~~~~~~~~ 101 (168)
+++|+|.|+|||+||||+++||+..+++..|++|++||+|...++++.+||..+.+. +.+ .+.+......+
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~g 81 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDG 81 (262)
T ss_pred CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcCC
Confidence 789999999999999999999955555548888899999999999999999999665 544 12233333489
Q ss_pred eeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhhc
Q 030973 102 VKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTL 162 (168)
Q Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~~ 162 (168)
++++|.+...... .....+.++.+++++. +.|||||||||+|++..++.+....
T Consensus 82 l~vipg~~~~~~~------~~~~~~~~~~~~~~l~-~~~D~iliD~~aGl~~~~~~~~~~s 135 (262)
T COG0455 82 LYVLPGGSGLEDL------AKLDPEDLEDVIKELE-ELYDYILIDTGAGLSRDTLSFILSS 135 (262)
T ss_pred EEEeeCCCChHHH------hhcCHHHHHHHHHHHH-hcCCEEEEeCCCCccHHHHHHHHhc
Confidence 9999877332221 1345678889999998 8999999999999999887766543
No 25
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.89 E-value=1.9e-22 Score=153.68 Aligned_cols=121 Identities=25% Similarity=0.375 Sum_probs=89.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC--Ccccc--------Cceee-ccc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTKD--------MKMVP-IEN 99 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~--~~~~~--------~~~~~-~~~ 99 (168)
+++|+|+|.|||+||||+|+|||..|++ .|+||++||+|++.++++.+|+..... ++.+. ..+.. ...
T Consensus 1 ~~ii~v~s~kGGvGKTt~a~~lA~~la~-~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (261)
T TIGR01968 1 ARVIVITSGKGGVGKTTTTANLGTALAR-LGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRL 79 (261)
T ss_pred CeEEEEecCCCCccHHHHHHHHHHHHHH-cCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCC
Confidence 4799999999999999999999999999 999999999999988999999876432 22110 01111 123
Q ss_pred CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ 160 (168)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~ 160 (168)
.+++++|.+.... . .......+.++++.++ +.||||||||||+++.....++.
T Consensus 80 ~~l~~l~~~~~~~---~----~~~~~~~l~~~l~~l~-~~~D~viiD~p~~~~~~~~~~l~ 132 (261)
T TIGR01968 80 KNLYLLPASQTRD---K----DAVTPEQMKKLVNELK-EEFDYVIIDCPAGIESGFRNAVA 132 (261)
T ss_pred CCeEEEeCCCchh---h----hhCCHHHHHHHHHHHH-HhCCEEEEeCCCCcCHHHHHHHH
Confidence 5788888763211 1 1122346788888888 89999999999999877655543
No 26
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.89 E-value=8.4e-23 Score=155.95 Aligned_cols=126 Identities=29% Similarity=0.388 Sum_probs=82.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC--Cccc----------cCceeecc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTK----------DMKMVPIE 98 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~--~~~~----------~~~~~~~~ 98 (168)
+++|+|+|.|||+||||+|.|||.+||+..|+|||+||+|||+ ++...++..... .... ...... .
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~-s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 79 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQG-SLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTV-V 79 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcc-hhhHhcCCCcccchhHHHHHhcccccccchhccc-C
Confidence 7899999999999999999999999994267999999999995 778888876550 0000 011111 3
Q ss_pred cCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHH
Q 030973 99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT 159 (168)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~ 159 (168)
..+++++|.....................+.++++.+. ++||||||||||+++....+++
T Consensus 80 ~~~ld~ips~~~l~~~~~~~~~~~~~~~~l~~~~~~~~-~~yD~iiID~pp~l~~l~~nal 139 (259)
T COG1192 80 IEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPVK-DDYDYIIIDTPPSLGVLTLNAL 139 (259)
T ss_pred CCCceEecCChHHHhHHHHHHhhhhHHHHHHHHhhhhc-cCCCEEEECCCCchhHHHHHHH
Confidence 45677777653222100000000112234455555555 7999999999999866655444
No 27
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.88 E-value=1.9e-22 Score=144.91 Aligned_cols=87 Identities=69% Similarity=1.106 Sum_probs=67.8
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCccCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP 112 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (168)
+|+|+|+|||+||||+|.|||..+|+ .|+||++||+|+++++++..+. +
T Consensus 1 vi~v~s~kgG~GKTt~a~~LA~~la~-~g~~vllvD~D~q~~~~~~~~~--------------------------~---- 49 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAK-LGYKVGLLDADIYGPSIPKMWR--------------------------G---- 49 (169)
T ss_pred CEEEecCCCcCChhHHHHHHHHHHHH-cCCcEEEEeCCCCCCCchHHHh--------------------------C----
Confidence 58999999999999999999999999 9999999999999976554310 0
Q ss_pred CCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHH
Q 030973 113 SSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT 159 (168)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~ 159 (168)
......++.+++.+..+.||||||||||++++..+.+.
T Consensus 50 ---------~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~~~~~ 87 (169)
T cd02037 50 ---------PMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLA 87 (169)
T ss_pred ---------cchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHHHHHHH
Confidence 01123455555554336899999999999988776544
No 28
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.88 E-value=1e-22 Score=156.77 Aligned_cols=118 Identities=25% Similarity=0.296 Sum_probs=79.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcccc-----------Cceeeccc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD-----------MKMVPIEN 99 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~~ 99 (168)
+++|+|. +||||||||+|.|||..||+..|+|||+||+|+|+++...++|.....++.+. ..+.....
T Consensus 2 ~~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 80 (275)
T PRK13233 2 TRKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTGF 80 (275)
T ss_pred ceEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCHHHHeeeCC
Confidence 5899999 89999999999999999997249999999999999766555665544433221 12233345
Q ss_pred CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT 151 (168)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~ 151 (168)
.+++++|.+..... ......+......+.+.++.+. ++||||||||++.+
T Consensus 81 ~~l~~ipa~~~~~~-~~~~~~~~~~~~~l~~~l~~~~-~~yD~iliD~~~~~ 130 (275)
T PRK13233 81 KDIRCVESGGPEPG-VGCAGRGVITAIDLMEENGAYT-DDLDFVFFDVLGDV 130 (275)
T ss_pred CCcEEEECCCCCCC-CCCCCcchhHHHHHHHHcCCcc-CCCCEEEEecCCce
Confidence 68999998743321 1111111111123556666666 88999999996654
No 29
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.87 E-value=4.3e-22 Score=152.70 Aligned_cols=117 Identities=28% Similarity=0.341 Sum_probs=74.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc-----------cCceeeccc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-----------DMKMVPIEN 99 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~ 99 (168)
|++|+|. +||||||||+|+|||..|++ .|+||++||+|+|.+....+++.....++.+ ...+.....
T Consensus 1 m~~iav~-~KGGvGKTT~~~nLA~~La~-~G~kVlliD~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 78 (270)
T cd02040 1 MRQIAIY-GKGGIGKSTTTQNLSAALAE-MGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIFEGF 78 (270)
T ss_pred CcEEEEE-eCCcCCHHHHHHHHHHHHHh-CCCeEEEEEcCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhheeecC
Confidence 5789998 69999999999999999999 9999999999999866555444332222211 111222334
Q ss_pred CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT 151 (168)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~ 151 (168)
.+++++|.+....... ...........+.+.++.+. ++|||||||||+.+
T Consensus 79 ~~l~~ip~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~-~~yD~viID~~g~~ 128 (270)
T cd02040 79 GGIKCVESGGPEPGVG-CAGRGVITAINLLEELGAYE-DDLDFVIYDVLGDV 128 (270)
T ss_pred CCeEEEeCCCCCCCCC-CcCcchhhHHHHHHhcCccc-cCCCEEEEecccCc
Confidence 6889998874332211 11111111111222234455 78999999998754
No 30
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.87 E-value=5.3e-22 Score=152.81 Aligned_cols=115 Identities=24% Similarity=0.264 Sum_probs=73.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc----------cCceeecccC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK----------DMKMVPIENY 100 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~ 100 (168)
|++|+|+ +||||||||+|+|||..||+ .|+|||+||+|+|.++...+++.....++.+ ...+......
T Consensus 1 m~~iav~-~KGGVGKTT~~~nLA~~La~-~G~rVLlID~Dpq~~~t~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (274)
T PRK13235 1 MRKVAIY-GKGGIGKSTTTQNTVAGLAE-MGKKVMVVGCDPKADSTRLLLGGLAQKTVLDTLREEGEDVELEDIRKEGYG 78 (274)
T ss_pred CCEEEEe-CCCCccHHHHHHHHHHHHHH-CCCcEEEEecCCcccccccccCCCCCccHHHHHHhcCCCCCHHHHhhcCCC
Confidence 4789999 79999999999999999999 9999999999999977666554333333221 1122233346
Q ss_pred CeeeeecCccCCCCCCcccCchhHHHHHHHHHHhh-----cCCCCcEEEEeCCCCCC
Q 030973 101 GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREV-----DWGNLDILVIDMPPGTG 152 (168)
Q Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l-----~~~~yD~IiiD~p~~~~ 152 (168)
+++++|.+...... ........... .+++.+ . ++||||||||++.+.
T Consensus 79 ~l~~ip~~~~~~~~-~~~~~~~~~~~---~~~~~l~~~~~~-~~yD~ilID~~~~~~ 130 (274)
T PRK13235 79 GTRCTESGGPEPGV-GCAGRGIITSV---NLLEQLGAYDDE-WNLDYVFYDVLGDVV 130 (274)
T ss_pred CCEEEeCCCCCCCC-CCCCCceeehh---HHHHhhchhhcc-CCCCEEEEECCCCCc
Confidence 78888765222210 10001111110 122333 3 679999999987764
No 31
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.87 E-value=9.8e-22 Score=150.94 Aligned_cols=114 Identities=28% Similarity=0.326 Sum_probs=73.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc-------------cCceeec
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-------------DMKMVPI 97 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~-------------~~~~~~~ 97 (168)
+++|+|. +||||||||+|+|||..||+ .|+|||+||+|+|. ++...++.....++.+ ...+...
T Consensus 2 ~~iIav~-~KGGVGKTT~~~nLA~~la~-~G~kVLliD~Dpq~-~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~ 78 (270)
T PRK13185 2 ALVLAVY-GKGGIGKSTTSSNLSAAFAK-LGKKVLQIGCDPKH-DSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVYE 78 (270)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEeccCCc-chhhhhcCCCCCcHHHHHHhccccccCCCHHHheee
Confidence 5899998 69999999999999999999 99999999999987 4455554332322211 1111222
Q ss_pred ccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHh--hcCCCCcEEEEeCCCCCC
Q 030973 98 ENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSRE--VDWGNLDILVIDMPPGTG 152 (168)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--l~~~~yD~IiiD~p~~~~ 152 (168)
...+++++|.+..+..... ..... ....++++. +. ++|||||||||+++.
T Consensus 79 ~~~~l~~ip~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~-~~yD~viIDt~g~~~ 130 (270)
T PRK13185 79 GYNGVDCVEAGGPPAGTGC---GGYVV-GETVKLLKEHHLL-DDYDVILFDVLGDVV 130 (270)
T ss_pred CCCCcEEEECCCCCCCCCc---cchhH-HHHHHHHHhcCcc-ccCCEEEEecCCCcc
Confidence 3468999988754322111 11111 111122222 34 689999999988764
No 32
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.86 E-value=2.4e-21 Score=150.68 Aligned_cols=117 Identities=26% Similarity=0.334 Sum_probs=81.1
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcccc------------Cceee
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD------------MKMVP 96 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~------------~~~~~ 96 (168)
..+++|+| ++||||||||+++|||..||+ .|+|||+||+|++.+++..+++.....++.+. ..+..
T Consensus 4 ~~~~~~~~-~GKGGVGKTt~a~NLA~~La~-~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i~ 81 (296)
T PRK13236 4 ENIRQIAF-YGKGGIGKSTTSQNTLAAMAE-MGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVML 81 (296)
T ss_pred cCceEEEE-ECCCcCCHHHHHHHHHHHHHH-CCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhhe
Confidence 44799999 789999999999999999999 99999999999999999888887655444332 11123
Q ss_pred cccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCC
Q 030973 97 IENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPG 150 (168)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~ 150 (168)
....+++++|++..... ....+......++.+.....+++||||+|||++.
T Consensus 82 ~~~~gv~llpa~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~yD~vliD~~~~ 132 (296)
T PRK13236 82 TGFRGVKCVESGGPEPG---VGCAGRGIITAINFLEENGAYQDLDFVSYDVLGD 132 (296)
T ss_pred eCCCCeEEEECCCCCCC---CCCcceeehhhhHHHHhcCccccCCEEEEecccc
Confidence 34579999998732221 1111111122344443322236899999999754
No 33
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.86 E-value=2.3e-21 Score=148.73 Aligned_cols=114 Identities=25% Similarity=0.292 Sum_probs=70.8
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc-------------cCceeeccc
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-------------DMKMVPIEN 99 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~-------------~~~~~~~~~ 99 (168)
+|+|. +||||||||+|+|||.+||+ .|+|||+||+|++. ++...++.....++.+ ...+.....
T Consensus 2 ~i~~~-gKGGVGKTT~~~nLA~~La~-~g~rVLliD~D~q~-~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~ 78 (268)
T TIGR01281 2 ILAVY-GKGGIGKSTTSSNLSVAFAK-LGKRVLQIGCDPKH-DSTFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVIYTGY 78 (268)
T ss_pred EEEEE-cCCcCcHHHHHHHHHHHHHh-CCCeEEEEecCccc-cccceecCCCCCcHHHHHHhccccccCCCHHHeeEeCC
Confidence 47787 79999999999999999999 99999999999987 4454554222223211 111222334
Q ss_pred CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG 152 (168)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~ 152 (168)
.+++++|.+...................++++ .+. ++|||||||||+++.
T Consensus 79 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~-~~yD~ViID~~~~~~ 128 (268)
T TIGR01281 79 GGVDCVEAGGPPAGSGCGGYVVGETVKLLKEH--HIL-DDYDVILFDVLGDVV 128 (268)
T ss_pred CCeEEEecCCCCCCCcccceehhhhHHHhhhc--ccc-ccCCEEEEecCCccc
Confidence 78999987643322111100000011122221 234 689999999988764
No 34
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.85 E-value=7.9e-21 Score=142.79 Aligned_cols=105 Identities=21% Similarity=0.266 Sum_probs=71.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (168)
|++|+|.|.|||+||||++.|||..+++ .|+||++||+|+|++ +...++.....+. .+ ......
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la~-~G~~VlliD~DpQ~s-~~~w~~~~~~~~~------~~---~~~~~~----- 64 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALAS-DGKRVALFEADENRP-LTRWKENALRSNT------WD---PACEVY----- 64 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHh-CCCcEEEEeCCCCCC-HHHHHHhhccccC------CC---ccceec-----
Confidence 5799999999999999999999999999 999999999999884 4443332111000 00 000000
Q ss_pred CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT 161 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~ 161 (168)
. ......++..++.+..+.||||||||||+.+.....++..
T Consensus 65 -~---------~~~~~~l~~~l~~~~~~~yD~iiID~pp~~~~~~~~al~~ 105 (231)
T PRK13849 65 -A---------ADELPLLEAAYEDAELQGFDYALADTHGGSSELNNTIIAS 105 (231)
T ss_pred -C---------CCHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHHHHH
Confidence 0 0112345555555542579999999999998877665443
No 35
>PHA02518 ParA-like protein; Provisional
Probab=99.85 E-value=6.7e-21 Score=140.94 Aligned_cols=98 Identities=28% Similarity=0.314 Sum_probs=69.6
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCccC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLV 111 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 111 (168)
++|+|+|.|||+||||+|+|||+.|++ .|+||++||+|+|++... .++..... . ..++..
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la~-~g~~vlliD~D~q~~~~~-~~~~~~~~-------------~--~~i~~~--- 60 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHA-DGHKVLLVDLDPQGSSTD-WAEAREEG-------------E--PLIPVV--- 60 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCCCCChHH-HHHhcccC-------------C--CCCchh---
Confidence 589999999999999999999999999 999999999999985433 33211100 0 111110
Q ss_pred CCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973 112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT 161 (168)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~ 161 (168)
. ....+.+.+..+. +.||||||||||+.+.....++..
T Consensus 61 --~---------~~~~~~~~l~~~~-~~~d~viiD~p~~~~~~~~~~l~~ 98 (211)
T PHA02518 61 --R---------MGKSIRADLPKVA-SGYDYVVVDGAPQDSELARAALRI 98 (211)
T ss_pred --h---------ccHHHHHHHHHHh-ccCCEEEEeCCCCccHHHHHHHHH
Confidence 0 0123455566666 899999999999987776655543
No 36
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.85 E-value=4.6e-21 Score=147.97 Aligned_cols=117 Identities=25% Similarity=0.277 Sum_probs=72.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcccc-----------Cceeeccc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD-----------MKMVPIEN 99 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~~ 99 (168)
|++|+|+ +||||||||+|.|||..||+ .|+|||+||+|+|++....+.+ ....++.+. ..+.....
T Consensus 1 ~~~i~~~-gKGGVGKTT~a~nLA~~La~-~G~rVLliD~Dpq~n~t~~l~~-~~~~~l~d~~~~~~~~~~~~~~~i~~~~ 77 (279)
T PRK13230 1 MRKFCFY-GKGGIGKSTTVCNIAAALAE-SGKKVLVVGCDPKADCTRNLVG-EKIPTVLDVLREKGIDNLGLEDIIYEGF 77 (279)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHh-CCCEEEEEeeCCcccccccccC-ccCCCHHHHHHhcCCCCCCHHHheeeCC
Confidence 5789998 79999999999999999999 9999999999999855444433 222222111 11222335
Q ss_pred CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT 151 (168)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~ 151 (168)
.+++++|.+...... ............+.+.+..+...+|||||||||+.+
T Consensus 78 ~~l~lipa~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~yD~viID~~~~~ 128 (279)
T PRK13230 78 NGIYCVESGGPEPGY-GCAGRGVITAIDLLKKLGVFEELGPDVVIYDILGDV 128 (279)
T ss_pred CCcEEEECCCCCCCC-CcCCcchhhHHHHHHHcCcccccCCCEEEEecCCcc
Confidence 789999877433221 100011111111122222333247999999998754
No 37
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.85 E-value=1e-20 Score=145.11 Aligned_cols=113 Identities=29% Similarity=0.314 Sum_probs=71.4
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc-------------cCceeeccc
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-------------DMKMVPIEN 99 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~-------------~~~~~~~~~ 99 (168)
+|+|. +||||||||+|+|||+.||+ .|+|||+||+|++. ++...++.....++.+ ...+.....
T Consensus 2 ~i~v~-gKGGvGKTT~a~nLA~~la~-~G~rvlliD~Dpq~-~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~ 78 (267)
T cd02032 2 VLAVY-GKGGIGKSTTSSNLSVALAK-RGKKVLQIGCDPKH-DSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGY 78 (267)
T ss_pred EEEEe-cCCCCCHHHHHHHHHHHHHH-CCCcEEEEecCCCC-CcceeccCCCCCCHHHHHHhccccccCCChhheEEECC
Confidence 57787 59999999999999999999 99999999999986 4455554322222221 112222334
Q ss_pred CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHh--hcCCCCcEEEEeCCCCCCH
Q 030973 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSRE--VDWGNLDILVIDMPPGTGD 153 (168)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--l~~~~yD~IiiD~p~~~~~ 153 (168)
.++++++.+....... +........ ..+++. +. ++|||||||||+++..
T Consensus 79 ~~l~~i~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~-~~yD~vIIDt~g~~~~ 129 (267)
T cd02032 79 GGVDCVEAGGPPAGAG---CGGYVVGET-VKLLKELNLF-EEYDVILFDVLGDVVC 129 (267)
T ss_pred CCcEEEEcCCCCCCcc---ccchHHHHH-HHHHHHcccc-ccCCEEEEeCCCCccc
Confidence 6899998774322111 111111111 122322 34 6899999999887643
No 38
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.84 E-value=1.5e-20 Score=144.81 Aligned_cols=115 Identities=28% Similarity=0.374 Sum_probs=74.7
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc-----------cCceeecccC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-----------DMKMVPIENY 100 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~ 100 (168)
++|+|+ +||||||||+|.|||..||+ .|+|||+||+|+|.+....+++.....++.+ ...+......
T Consensus 1 ~~ia~~-gKGGVGKTT~a~nLA~~La~-~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~ 78 (275)
T TIGR01287 1 RQIAIY-GKGGIGKSTTTQNIAAALAE-MGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEGFG 78 (275)
T ss_pred CeeEEe-CCCcCcHHHHHHHHHHHHHH-CCCeEEEEeCCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHHeeeeCCC
Confidence 468887 69999999999999999999 9999999999999876655555444433222 1122233346
Q ss_pred CeeeeecCccCCCCCCcccCchhHH-HHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973 101 GVKCMSMGFLVPSSSPVVWRGPMVM-SALRKMSREVDWGNLDILVIDMPPGT 151 (168)
Q Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~l~~~~yD~IiiD~p~~~ 151 (168)
++++++.+...+.. .....+.... ..+++ +..+. ++||||||||++.+
T Consensus 79 ~l~~i~~~~~~~~~-~~~~~~~~~~~~~~~~-l~~l~-~~yD~iiIDt~~~~ 127 (275)
T TIGR01287 79 GIRCVESGGPEPGV-GCAGRGVITAINLLEE-LGAYE-DDLDFVFYDVLGDV 127 (275)
T ss_pred CEEEEeCCCCCccC-CCccchhhhHHHHHHH-hhhhh-ccCCEEEEeccCcc
Confidence 88888876433221 1111111111 12333 44556 78999999998754
No 39
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.84 E-value=1.4e-20 Score=146.31 Aligned_cols=115 Identities=25% Similarity=0.313 Sum_probs=77.0
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc------------cCceeec
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK------------DMKMVPI 97 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~------------~~~~~~~ 97 (168)
++++|+|. +|||+||||+++|||..|++ .|+|||+||+|+++++...+++.....++.+ .+.+...
T Consensus 3 ~~~~iai~-~KGGvGKTt~~~nLa~~la~-~g~kVLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (295)
T PRK13234 3 KLRQIAFY-GKGGIGKSTTSQNTLAALVE-MGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKI 80 (295)
T ss_pred cceEEEEE-CCCCccHHHHHHHHHHHHHH-CCCeEEEEecccccccccccccCCCCCcHHHHHHhcCCcccccHHHHhee
Confidence 37899997 99999999999999999999 9999999999999988776655443333321 1112223
Q ss_pred ccCCeeeeecCccCCCCCCcccCchhHHHHHH-HHHHhhc-CCCCcEEEEeCCCCC
Q 030973 98 ENYGVKCMSMGFLVPSSSPVVWRGPMVMSALR-KMSREVD-WGNLDILVIDMPPGT 151 (168)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~l~-~~~yD~IiiD~p~~~ 151 (168)
...+++++|.+..... ....+. ...+. ..++.+. .++||||||||++.+
T Consensus 81 ~~~gl~lipa~~~~~~---~~~~~~--~~~l~~~~l~~~~~~~~yD~IlID~~~~~ 131 (295)
T PRK13234 81 GYKGIKCVESGGPEPG---VGCAGR--GVITSINFLEENGAYDDVDYVSYDVLGDV 131 (295)
T ss_pred cCCCeEEEECCCCCCC---CCCCcc--eeeeHHHHHHHcCCCccCCEEEEEcCCCc
Confidence 4579999998643221 111110 11222 2444432 168999999997654
No 40
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.83 E-value=4.6e-20 Score=133.55 Aligned_cols=112 Identities=30% Similarity=0.432 Sum_probs=70.7
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCccCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP 112 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (168)
.|+|+|+|||+||||+|+|||..+ +||++||+|++.|+++.+|+.+....................+.+.+..
T Consensus 1 ~I~v~s~kgG~GKSt~a~nLA~~l-----~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 73 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL-----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCGLC-- 73 (179)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHH-----hCcEEEECCCCCCchhhhcCCCccccccceecCCceEEchhhhccccch--
Confidence 389999999999999999999999 6999999999999999999987654321110000000011111111100
Q ss_pred CCCCcccCchhHHHHHHHHHHhh-cCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973 113 SSSPVVWRGPMVMSALRKMSREV-DWGNLDILVIDMPPGTGDAQLTTTQ 160 (168)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~l~~~l-~~~~yD~IiiD~p~~~~~~~~~~~~ 160 (168)
......+.+.+..+ .+++||||||||||++++....++.
T Consensus 74 ---------~~~~~~~~~~~~~~~~~~~~d~viiDtpp~~~~~~~~~l~ 113 (179)
T cd03110 74 ---------GKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIASLT 113 (179)
T ss_pred ---------HHHHHHHHHHHHHhhhhcCCCEEEEECcCCCcHHHHHHHH
Confidence 01112233322211 1268999999999999887765543
No 41
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.83 E-value=5.9e-20 Score=142.45 Aligned_cols=113 Identities=27% Similarity=0.293 Sum_probs=70.5
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc-------------cCceeecccC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-------------DMKMVPIENY 100 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~-------------~~~~~~~~~~ 100 (168)
|+|++ ||||||||+|.|||+.||+ .|+|||+||+|+|++....+.+... .++.+ ..........
T Consensus 3 ia~~g-KGGVGKTTta~nLA~~La~-~G~rVLlID~DpQ~n~t~~l~g~~~-~~i~~~~~~~~~~~~~~~~~~~i~~~~~ 79 (290)
T CHL00072 3 LAVYG-KGGIGKSTTSCNISIALAR-RGKKVLQIGCDPKHDSTFTLTGFLI-PTIIDTLQSKDYHYEDVWPEDVIYKGYG 79 (290)
T ss_pred EEEEC-CCCCcHHHHHHHHHHHHHH-CCCeEEEEeccCCCcccccccCcCC-CCHHHHHhhcccccccCChhheEEeCCC
Confidence 77766 9999999999999999999 9999999999999855444334322 12211 1112223357
Q ss_pred CeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcC-CCCcEEEEeCCCCCCH
Q 030973 101 GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDW-GNLDILVIDMPPGTGD 153 (168)
Q Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~yD~IiiD~p~~~~~ 153 (168)
+++++|.+........ ..... .....+++.+.. ++|||||||||+++..
T Consensus 80 ~l~lip~~~~~~~~~~---~~~~~-~~~~~ll~~l~~~~~yD~IiIDt~~~l~~ 129 (290)
T CHL00072 80 GVDCVEAGGPPAGAGC---GGYVV-GETVKLLKELNAFYEYDIILFDVLGDVVC 129 (290)
T ss_pred CeEEEeCCCCCCccch---hhccc-HHHHHHHHHhhccccCCEEEEecCCccee
Confidence 8999988754322111 00000 111123333321 4799999999988643
No 42
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.82 E-value=9.3e-21 Score=145.13 Aligned_cols=115 Identities=25% Similarity=0.332 Sum_probs=73.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc---------cCceeecccCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK---------DMKMVPIENYG 101 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~ 101 (168)
+++|+|. +|||+||||+|+|||..|++ .| |||+||+|++.+....+++... .++.+ ..........+
T Consensus 2 ~~~iav~-~KGGvGKTT~a~nLA~~La~-~G-rVLliD~Dpq~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (264)
T PRK13231 2 MKKIAIY-GKGGIGKSTTVSNMAAAYSN-DH-RVLVIGCDPKADTTRTLCGKRI-PTVLDTLKDNRKPELEDIIHEGFNG 77 (264)
T ss_pred ceEEEEE-CCCCCcHHHHHHHHhcccCC-CC-EEEEEeEccCcccchhhhcCCc-cHHHHHHhhcCCCChhHhheeCCCC
Confidence 6899999 69999999999999999999 99 9999999999855544444322 22211 11222233567
Q ss_pred eeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973 102 VKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT 151 (168)
Q Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~ 151 (168)
++++|.+..... .............+.+.+..++ ++||||||||++.+
T Consensus 78 l~~i~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~-~~yD~ViIDt~~~~ 125 (264)
T PRK13231 78 ILCVESGGPEPG-VGCAGRGVIVAMNLLENLGVFD-EDIDVVIYDVLGDV 125 (264)
T ss_pred eEEEEcCCCCCC-CCCcCceeeehhhhHHhhcccc-CCCCEEEEecCCCc
Confidence 888887632211 1111111111112344555666 88999999998754
No 43
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.80 E-value=1.1e-20 Score=140.79 Aligned_cols=111 Identities=39% Similarity=0.528 Sum_probs=66.7
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCccC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLV 111 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 111 (168)
++|+|.|+|||+||||+|.|||.+|++ .|+||-++|+|.+++++..+++......-.+.. ..+. +....++
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~-~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~gi-~Lp~--p~~~~L~----- 71 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALAR-MGKKVGLLDLDIRQPSLPRYLENRAAWAQRDGI-ELPV--PSHFFLP----- 71 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHC-TT--EEEEE--TTT-HHHHHHHHHHHHHHHHT---------EEE-SS-----
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHH-CCCeEEEEecCCCCCCHHHHHhccchhHHhcCc-ccCC--ccceeec-----
Confidence 589999999999999999999999999 999999999999999999999743221000000 0110 1111111
Q ss_pred CCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973 112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG 152 (168)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~ 152 (168)
.........+......+++++..+. ..+||||||||.+-+
T Consensus 72 ~~~~~v~~~~~~~~~~L~q~l~~l~-~~~DfLVID~PGtd~ 111 (261)
T PF09140_consen 72 PDQASVWEGENVEDKRLEQALADLE-GDLDFLVIDTPGTDD 111 (261)
T ss_dssp SHHHHTTS-HHHHHHHHHHHHHHHH-HH-SEEEEEE-SSS-
T ss_pred ccccccccCcchhHHHHHHHHHHHh-cCCCEEEEeCCCCCc
Confidence 1001111222234468899998888 899999999995433
No 44
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.79 E-value=2.8e-19 Score=130.46 Aligned_cols=115 Identities=30% Similarity=0.397 Sum_probs=73.0
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCccCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPS 113 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (168)
|+|+|.|||+||||+|++||..|++ .|+||++||+|++.+.+..+++... .+.......... ..-+........
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~-~g~~VlliD~D~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~ 74 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALAR-KGKKVLLIDLDPQAPNLSILFGVYD--ILREGLENANAI---LKNFESQDIYQG 74 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH-TTS-EEEEEESTTSHHHHHHTTCHH--HHTTSSHGHHCH---HESCCHHHHHHH
T ss_pred CEEEcCCCCccHHHHHHHHHhcccc-ccccccccccCcccccHHHHhcchh--hccccceehhhh---hhccchhhhhhh
Confidence 7899999999999999999999999 9999999999999988777765400 000000000000 000000000000
Q ss_pred CCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973 114 SSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ 160 (168)
Q Consensus 114 ~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~ 160 (168)
. .. .....+.++++.+....||||||||||+++.....++.
T Consensus 75 ~-----~~-~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~~~~~l~ 115 (195)
T PF01656_consen 75 E-----EY-LDPELLREILESLIKSDYDYIIIDTPPGLSDPVRNALA 115 (195)
T ss_dssp C-----HC-HHHHHHHHHHHHHHHTTSSEEEEEECSSSSHHHHHHHH
T ss_pred h-----hh-hHHHHHHHHHHHhhhccccceeecccccccHHHHHHHH
Confidence 0 00 23456778877755245999999999999888665544
No 45
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.79 E-value=5.6e-20 Score=130.18 Aligned_cols=117 Identities=27% Similarity=0.389 Sum_probs=84.6
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccC-------------c----e
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM-------------K----M 94 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~-------------~----~ 94 (168)
|+|+|+|++||+||||+|.+||..+|+ .|++|++||+|...+.+..+++.+...++.+.. . +
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~-~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~ 79 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALAR-KGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHI 79 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHH-TTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHh-cCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHh
Confidence 689999999999999999999999999 999999999999999999999988876655421 1 1
Q ss_pred eecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHH
Q 030973 95 VPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL 156 (168)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~ 156 (168)
.+....++.+++.. ...........+.+.++++.++ +.||+||||+|+.+.....
T Consensus 80 ~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~li~~l~-~~yd~IivD~~~~~~~~~~ 134 (157)
T PF13614_consen 80 YSDAHDGLDLLPPP------SSPEDLEELTPEDVEELIDALK-EHYDYIIVDLPSSLSNPDT 134 (157)
T ss_dssp EEESSTTEEEE--S------SSSHHHHHHTSHHHHHHHHHHH-HHSSEEEEEEESTTTHTHH
T ss_pred eeccCCCeEEecCC------CCCCchhhcCHHHHHHHHHHHH-HcCCEEEEECcCCccHHHH
Confidence 11122455555432 2211122345578999999999 8999999999999876644
No 46
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.78 E-value=8.4e-19 Score=126.42 Aligned_cols=50 Identities=48% Similarity=0.672 Sum_probs=45.5
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID 83 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~ 83 (168)
+|+|+|+|||+||||+|+|||..+++ +|+||++||+|++.+++...++..
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~~-~g~~vllvD~D~~~~~~~~~~~~~ 50 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQ-LGYKVVLIDADLGLRNLDLILGLE 50 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCCchhhcccc
Confidence 58999999999999999999999999 999999999999988887776543
No 47
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.78 E-value=1.9e-18 Score=134.34 Aligned_cols=56 Identities=32% Similarity=0.385 Sum_probs=48.1
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcc
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVT 89 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~ 89 (168)
++|+|+ +|||+||||+|+|||..||+ .|+|||+||+|++.+++..+++.....++.
T Consensus 1 ~vIav~-gKGGvGKTT~a~nLA~~La~-~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~ 56 (296)
T TIGR02016 1 RIIAIY-GKGGSGKSFTTTNLSHMMAE-MGKRVLQLGCDPKHDSTSLLFGGISLPTII 56 (296)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEEecCCCCccchhccCCCCCCHH
Confidence 579998 89999999999999999999 999999999999998888877643333443
No 48
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.73 E-value=3.7e-17 Score=128.23 Aligned_cols=118 Identities=22% Similarity=0.317 Sum_probs=78.2
Q ss_pred cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccC--------ce----
Q 030973 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM--------KM---- 94 (168)
Q Consensus 27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~--------~~---- 94 (168)
..+..++|+|+ +|||+||||+++|||..|++ .|+||++||+|+++++++.+||....+++.+.. ..
T Consensus 27 ~~~~~~ii~v~-gkgG~GKSt~a~nLa~~la~-~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~d 104 (329)
T cd02033 27 PTKKTQIIAIY-GKGGIGKSFTLANLSYMMAQ-QGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGD 104 (329)
T ss_pred CCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeec
Confidence 34568999998 59999999999999999999 999999999999999999999977655543310 00
Q ss_pred eecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhh---cCCCCcEEEEeCCCCC
Q 030973 95 VPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREV---DWGNLDILVIDMPPGT 151 (168)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l---~~~~yD~IiiD~p~~~ 151 (168)
......+++++..+ .+.....+........ .++++.+ . ..||||||||++.+
T Consensus 105 v~~~~~gv~~~~~g---~p~~~~G~~~~~~i~~-~~~l~~l~~~~-w~~DyVliD~~gdv 159 (329)
T cd02033 105 VCFKRDGVFAMELG---GPEVGRGCGGRGIIHG-FELLEKLGFHD-WDFDYVLLDFLGDV 159 (329)
T ss_pred eEEEeCCEEEecCC---CCeecccccchHHHHH-HHHHHHccCcc-ccCCEEEEecCCcc
Confidence 01112456665533 2222222222111111 1344443 4 37999999997744
No 49
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.73 E-value=3.8e-17 Score=121.18 Aligned_cols=98 Identities=26% Similarity=0.355 Sum_probs=66.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (168)
|++|.|.|.|||+||||.+..||..|++ +|.+|.+||+||++|...+.-.......+. .++.+...
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~-~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~----------~~~~V~~~--- 66 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAA-RGARVALIDADPNQPLAKWAENAQRPGAWP----------DRIEVYEA--- 66 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHH-CCCeEEEEeCCCCCcHHHHHHhccccCCCC----------CCeeEEec---
Confidence 6899999999999999999999999999 999999999999986543321111111111 11111110
Q ss_pred CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHH
Q 030973 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA 154 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~ 154 (168)
.....+++.++......|||||||++++-+..
T Consensus 67 ------------~e~~~l~~~~e~a~~~~~d~VlvDleG~as~~ 98 (231)
T PF07015_consen 67 ------------DELTILEDAYEAAEASGFDFVLVDLEGGASEL 98 (231)
T ss_pred ------------cchhhHHHHHHHHHhcCCCEEEEeCCCCCchh
Confidence 11235566665544246999999999865443
No 50
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.71 E-value=5.1e-17 Score=108.19 Aligned_cols=42 Identities=50% Similarity=0.532 Sum_probs=39.3
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGPS 75 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~~~~ 75 (168)
+|+++|.|||+||||++.+||..+++ . |++|+++|+|++.+.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~la~~~~~-~~~~~~~l~d~d~~~~~ 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAK-EAGRRVLLVDLDLQFGD 43 (106)
T ss_pred CEEEECCCCCCcHHHHHHHHHHHHHh-cCCCcEEEEECCCCCCC
Confidence 58899999999999999999999999 7 999999999998743
No 51
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.71 E-value=5.2e-17 Score=107.56 Aligned_cols=39 Identities=64% Similarity=0.720 Sum_probs=37.5
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+|+|.|.|||+||||+|.+||..+++ .|++|+++|+|++
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d~d~~ 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLIDLDPQ 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence 48999999999999999999999999 9999999999987
No 52
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.71 E-value=1e-17 Score=127.71 Aligned_cols=48 Identities=35% Similarity=0.377 Sum_probs=45.0
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID 83 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~ 83 (168)
+.++++|||+||||+++++|..+|+ .|+|||+||+|++ ++++..|+..
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~-~g~~vLlvd~D~~-~sl~~~~~~~ 49 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAE-QGKKVLLVSTDPA-HSLSDSFNQE 49 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHH-CCCCceEEeCCCc-ccHHHHhCCc
Confidence 6678999999999999999999999 9999999999997 5999999876
No 53
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.69 E-value=2e-17 Score=123.44 Aligned_cols=107 Identities=25% Similarity=0.373 Sum_probs=67.2
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC-------CCcccccccCCCCCccccCceeecc--------
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG-------PSVPMMMKIDQKPEVTKDMKMVPIE-------- 98 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~-------- 98 (168)
|.++++|||+||||+++++|..+++ .|+||++||+|+++ +++..+++..+.. ...........
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~-~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAE-EGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPE-IAPNLYREEVDATRRVERA 78 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHH-CCCcEEEEECCCCcccccccCCCchhhhccCChH-HHHHHHHHHHHHHHHhhhc
Confidence 4678999999999999999999999 99999999999988 3555555431110 00000000000
Q ss_pred --cCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCC-CcEEEEeCCCCC
Q 030973 99 --NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGN-LDILVIDMPPGT 151 (168)
Q Consensus 99 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-yD~IiiD~p~~~ 151 (168)
..+..+++.+...++. ...-.+.++++.++ +. ||+|||||||+.
T Consensus 79 ~~~~~~~~~~~~~~~p~~--------~ell~~~~l~~~l~-~~~yD~IIiD~pp~~ 125 (217)
T cd02035 79 WGGEGGLMLELAAALPGI--------EELASLLAVFREFS-EGLYDVIVFDTAPTG 125 (217)
T ss_pred ccchhhhHHhHhccCCCH--------HHHHHHHHHHHHHh-cCCCCEEEECCCCch
Confidence 0122233333222111 11223777888877 55 999999999973
No 54
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.68 E-value=1.8e-16 Score=110.43 Aligned_cols=43 Identities=53% Similarity=0.688 Sum_probs=39.7
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV 76 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l 76 (168)
+|+|+++|||+||||++.++|..+++ .|++|+++|+|++.+++
T Consensus 1 ~i~~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~~~~~~ 43 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAK-LGKRVLLLDADLGLANL 43 (139)
T ss_pred CEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCCCCCCC
Confidence 58999999999999999999999999 99999999999877543
No 55
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.68 E-value=1.6e-16 Score=124.12 Aligned_cols=109 Identities=28% Similarity=0.287 Sum_probs=72.3
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeec-----
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSM----- 107 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 107 (168)
.|.++++||||||||+|+++|..+|+ .|+|||+|..||.+ +++..|+.+-........ .|++.+..
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~-~g~kvLlvStDPAh-sL~d~f~~elg~~~~~I~-------~nL~a~eiD~~~~ 73 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAE-SGKKVLLVSTDPAH-SLGDVFDLELGHDPRKVG-------PNLDALELDPEKA 73 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHH-cCCcEEEEEeCCCC-chHhhhccccCCchhhcC-------CCCceeeecHHHH
Confidence 56777999999999999999999999 99999999999966 899998873221111100 11111110
Q ss_pred ------------------Ccc--CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCC
Q 030973 108 ------------------GFL--VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPG 150 (168)
Q Consensus 108 ------------------~~~--~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~ 150 (168)
+.+ ...+.....++....-.+..+.+.+...+||+||+||||.
T Consensus 74 l~ey~~~v~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPT 136 (322)
T COG0003 74 LEEYWDEVKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPT 136 (322)
T ss_pred HHHHHHHHHHHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcCCCh
Confidence 000 0111112234444555667777776668899999999995
No 56
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.68 E-value=4.7e-16 Score=114.74 Aligned_cols=116 Identities=25% Similarity=0.368 Sum_probs=80.5
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC-CCcccc--------------------
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-PEVTKD-------------------- 91 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~-~~~~~~-------------------- 91 (168)
.|+| ++|||+||||+|+.|+..+....|++||+||+|+ .++|+..||++.. ..+.+.
T Consensus 2 kIaI-~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~f 79 (255)
T COG3640 2 KIAI-TGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMF 79 (255)
T ss_pred eEEE-ecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccc
Confidence 3555 7999999999999988888882459999999999 7899999998873 222220
Q ss_pred ---------CceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCH
Q 030973 92 ---------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGD 153 (168)
Q Consensus 92 ---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~ 153 (168)
.........+++++..|.+........++ ....++++++.+...+||+||+||-+|+.+
T Consensus 80 k~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp---~~allR~~l~~l~~~~~e~VivDtEAGiEH 147 (255)
T COG3640 80 KENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACP---MNALLRRLLRHLILNRYEVVIVDTEAGIEH 147 (255)
T ss_pred ccCcchhhhhHHHhhhcCCccEEEeccccCCCCcccch---HHHHHHHHHHHHhcccCcEEEEecccchhh
Confidence 00111223356666666554333333333 345778888887746699999999998644
No 57
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=99.65 E-value=6.4e-16 Score=120.59 Aligned_cols=48 Identities=38% Similarity=0.436 Sum_probs=42.4
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID 83 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~ 83 (168)
+.|+++||||||||+|+.+|.++|+ .|+|||++..||.+ ++...|+.+
T Consensus 3 ~~~~~GKGGVGKTT~aaA~A~~~A~-~G~rtLlvS~Dpa~-~L~d~l~~~ 50 (305)
T PF02374_consen 3 ILFFGGKGGVGKTTVAAALALALAR-RGKRTLLVSTDPAH-SLSDVLGQK 50 (305)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH-TTS-EEEEESSTTT-HHHHHHTS-
T ss_pred EEEEecCCCCCcHHHHHHHHHHHhh-CCCCeeEeecCCCc-cHHHHhCCc
Confidence 5667999999999999999999999 99999999999965 888899874
No 58
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.57 E-value=1.2e-14 Score=109.54 Aligned_cols=113 Identities=29% Similarity=0.361 Sum_probs=80.9
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc------------cCceeeccc
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK------------DMKMVPIEN 99 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~------------~~~~~~~~~ 99 (168)
|.|+|+ +|||.||||+++||+.+||+ .|+||+.|.|||-+.+...+++-...+++.+ .+.+.....
T Consensus 1 r~IAiY-GKGGIGKST~~~Nlsaala~-~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~ 78 (273)
T PF00142_consen 1 RKIAIY-GKGGIGKSTTASNLSAALAE-MGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGF 78 (273)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHHH-TT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEG
T ss_pred CeEEEE-cCCCcccChhhhHHHHHHHh-ccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEecc
Confidence 457774 79999999999999999999 9999999999999988877887666555433 123445566
Q ss_pred CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcC-CCCcEEEEeCCC
Q 030973 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDW-GNLDILVIDMPP 149 (168)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~yD~IiiD~p~ 149 (168)
.++.++..| .+++...+.+......++.+-+.-.. .+||+|++|.-.
T Consensus 79 ~gi~CvEsG---GPePGvGCaGRGI~~a~~~L~~~~~~~~~~D~v~yDVLG 126 (273)
T PF00142_consen 79 KGILCVESG---GPEPGVGCAGRGIITALELLEELGAYEDDYDFVLYDVLG 126 (273)
T ss_dssp GGEEEEE------SCTTSSBHHHHHHHHHHHHHHTTTSTSTSSEEEEEEES
T ss_pred CCceeeccC---CCcccccccccchhhhhhhHHhhhhhhcCCceEEEEEEe
Confidence 799999998 77888888877666665555333221 469999999643
No 59
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.56 E-value=2e-14 Score=97.06 Aligned_cols=106 Identities=25% Similarity=0.256 Sum_probs=68.7
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCccCCCCC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSS 115 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 115 (168)
++++|||+||||++.++|+.+++ .|+||++||+|+ +++...+...... ...++-.+...+.+.
T Consensus 3 ~~~GkgG~GKTt~a~~la~~l~~-~g~~V~~id~D~--~~~~~~~~~~~~~--------------~~~~i~~g~~~~~~~ 65 (116)
T cd02034 3 AITGKGGVGKTTIAALLARYLAE-KGKPVLAIDADP--DDLPERLSVEVGE--------------IKLLLVMGMGRPGGE 65 (116)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCc--hhhHHHHhhccCC--------------ceEEEEecccccCCC
Confidence 45789999999999999999999 999999999999 3444333332211 011122221111111
Q ss_pred CcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973 116 PVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT 161 (168)
Q Consensus 116 ~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~ 161 (168)
...+. ....+++++..+....|||+++||++++......+.+.
T Consensus 66 g~~~~---~n~~~~~~l~~~~~~~~~~vivDt~ag~e~~~~~~~~~ 108 (116)
T cd02034 66 GCYCP---ENALLNALLRHLVLTRDEQVVVDTEAGLEHLGRGTAEG 108 (116)
T ss_pred CCEeh---hhHHHHHHHHHeEccCCCEEEEecHHHHHHHHhhcccc
Confidence 11111 11367777777532899999999999997777665543
No 60
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.56 E-value=3.6e-14 Score=104.59 Aligned_cols=114 Identities=31% Similarity=0.382 Sum_probs=88.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc------------cCceeecc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK------------DMKMVPIE 98 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~------------~~~~~~~~ 98 (168)
++.|+|+ +|||.||||++.|++.+||+ .|+||++|-|||-+.+...++|-...+++.+ .+.+....
T Consensus 1 mr~iAiY-GKGGIGKSTts~N~aAAla~-~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~G 78 (278)
T COG1348 1 MRQIAIY-GKGGIGKSTTSQNLAAALAE-LGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTG 78 (278)
T ss_pred CceEEEe-cCCCcCcchhHHHHHHHHHH-cCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheecc
Confidence 4578885 79999999999999999999 9999999999999988888888444443322 24456677
Q ss_pred cCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcC-CCCcEEEEeCCC
Q 030973 99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDW-GNLDILVIDMPP 149 (168)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~yD~IiiD~p~ 149 (168)
..++.++.+| .+++...+.+......++.+-+.-.. +..|+||+|...
T Consensus 79 f~Gv~CVEsG---GPepGvGCAGRGVitai~~Le~lgaf~~~~DvviyDVLG 127 (278)
T COG1348 79 FGGVKCVESG---GPEPGVGCAGRGVITAINLLEELGAFEEDLDVVIYDVLG 127 (278)
T ss_pred CCceEEeecC---CCCCCCCcccchHHHHHHHHHHhCCccccCCEEEEeccC
Confidence 7899999998 88899999888777666655433122 346999999865
No 61
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.52 E-value=5e-14 Score=106.05 Aligned_cols=53 Identities=43% Similarity=0.630 Sum_probs=48.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK 85 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~ 85 (168)
+..|+|+|+|||+||||+++|||..|+. .+|++++|+|...|+++.+|+.+..
T Consensus 1 mm~vAV~sGKGGtGKTTva~~la~~l~~--~~~~~l~DcDVe~PNl~l~l~~e~~ 53 (284)
T COG1149 1 MMQVAVASGKGGTGKTTVAANLAVLLGD--KYKLVLADCDVEAPNLHLLLGVEVL 53 (284)
T ss_pred CcEEEEeecCCCCChhhHHHHHHHHhcc--ccceEEEecCCCCCCcceEeccchh
Confidence 3569999999999999999999999987 7899999999999999999986643
No 62
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.46 E-value=5.5e-13 Score=102.59 Aligned_cols=45 Identities=33% Similarity=0.392 Sum_probs=39.9
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~ 75 (168)
..+++|+|+ +.+|+||||++++||..+++ .|+||++||+|+++..
T Consensus 70 ~~~~vi~l~-G~~G~GKTTt~akLA~~l~~-~g~~V~li~~D~~r~~ 114 (272)
T TIGR00064 70 NKPNVILFV-GVNGVGKTTTIAKLANKLKK-QGKSVLLAAGDTFRAA 114 (272)
T ss_pred CCCeEEEEE-CCCCCcHHHHHHHHHHHHHh-cCCEEEEEeCCCCCHH
Confidence 347888888 79999999999999999998 9999999999986643
No 63
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.45 E-value=4.3e-13 Score=105.35 Aligned_cols=130 Identities=24% Similarity=0.283 Sum_probs=100.0
Q ss_pred ccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCc------------
Q 030973 26 KIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMK------------ 93 (168)
Q Consensus 26 ~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~------------ 93 (168)
....+.++++|.+.|||+|-||+|.|+|+.++...++.|+++|+|.+.+.-..+|+.++..++.+...
T Consensus 99 s~~~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~ 178 (366)
T COG4963 99 SIAQQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDS 178 (366)
T ss_pred hhhhhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHH
Confidence 35667899999999999999999999999999978999999999999998889999988887776321
Q ss_pred eeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhhc
Q 030973 94 MVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTL 162 (168)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~~ 162 (168)
....-..++.+++.. .............+..+++.++ ..||+||+|.|..+.+.+..++..-
T Consensus 179 ~~~~~~~~l~ll~a~------~~~~~~~d~~~~~~~~Ll~~~~-~~~~~vV~Dlp~~~~~~t~~vL~~S 240 (366)
T COG4963 179 LLTRLASGLKLLAAP------TELAKNYDLKTGAVERLLDLLR-GSFDFVVVDLPNIWTDWTRQVLSGS 240 (366)
T ss_pred HHhccCCCceeecCC------cchhhhcccccchHHHHHHHhh-ccCCeEEEcCCCccchHHHHHHhcC
Confidence 111222455555432 2222222445667888888888 8999999999998888877766543
No 64
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.6e-13 Score=102.19 Aligned_cols=54 Identities=28% Similarity=0.343 Sum_probs=47.4
Q ss_pred CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID 83 (168)
Q Consensus 28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~ 83 (168)
........|+++||||||||+++.||..+|. .+.+||+|.+||.+ +++..|+-.
T Consensus 15 ~q~slKwifVGGKGGVGKTTcs~sLAvqla~-~r~~vLiISTDPAH-NlSDAF~qk 68 (323)
T KOG2825|consen 15 EQTSLKWIFVGGKGGVGKTTCSCSLAVQLAK-VRESVLIISTDPAH-NLSDAFSQK 68 (323)
T ss_pred hcceeeEEEEcCcCCcCccchhhHHHHHHhc-cCCceEEeecCccc-chHHHHHHH
Confidence 4457788999999999999999999999999 99999999999976 778777633
No 65
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=99.41 E-value=2.3e-12 Score=96.89 Aligned_cols=48 Identities=33% Similarity=0.303 Sum_probs=44.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMM 79 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~ 79 (168)
++++.+.++|||+||||+|++||.++++ .|++|++||+|++++.+..+
T Consensus 2 ~~i~~i~~~KGGvGKSt~a~~la~~l~~-~g~~vl~iD~D~~n~~~~~~ 49 (241)
T PRK13886 2 AKIHMVLQGKGGVGKSFIAATIAQYKAS-KGQKPLCIDTDPVNATFEGY 49 (241)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHh-CCCCEEEEECCCCCchhhhH
Confidence 6799999999999999999999999999 99999999999998766544
No 66
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.40 E-value=4.3e-12 Score=89.28 Aligned_cols=37 Identities=35% Similarity=0.407 Sum_probs=33.9
Q ss_pred ecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973 37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (168)
Q Consensus 37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~ 74 (168)
+.+++|+||||++.+++..+.+ .|.||+++|+|++.+
T Consensus 4 ~~G~~GsGKTt~~~~l~~~~~~-~g~~v~ii~~D~~~~ 40 (148)
T cd03114 4 ITGVPGAGKSTLIDALITALRA-RGKRVAVLAIDPSSP 40 (148)
T ss_pred EECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEeCCCCC
Confidence 4689999999999999999999 999999999998653
No 67
>PRK10867 signal recognition particle protein; Provisional
Probab=99.40 E-value=2.2e-12 Score=104.71 Aligned_cols=95 Identities=26% Similarity=0.302 Sum_probs=62.1
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (168)
+.+.++.+..|+||||++++||.++++ . |++|++||+|++++.....+....+ ..++.+.+.+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~-~~G~kV~lV~~D~~R~aa~eQL~~~a~-------------~~gv~v~~~~~- 164 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKK-KKKKKVLLVAADVYRPAAIEQLKTLGE-------------QIGVPVFPSGD- 164 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH-hcCCcEEEEEccccchHHHHHHHHHHh-------------hcCCeEEecCC-
Confidence 445555689999999999999999999 7 9999999999998775544432111 12333333210
Q ss_pred CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT 151 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~ 151 (168)
. .. ......+.++..+...||+||||||+..
T Consensus 165 -~--~d-------p~~i~~~a~~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 165 -G--QD-------PVDIAKAALEEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred -C--CC-------HHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 0 00 1122234444433267999999999975
No 68
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.35 E-value=5.2e-12 Score=102.46 Aligned_cols=47 Identities=32% Similarity=0.367 Sum_probs=40.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHH-HhCCCeEEEEeCCCCCCCccc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYGPSVPM 78 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la-~~~g~rVlliD~D~~~~~l~~ 78 (168)
.+.|.++++..|+||||++++||.++. + .|+||++||+|++++....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~-~g~kV~lV~~D~~R~~a~~ 145 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKK-QGKKVLLVACDLYRPAAIE 145 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh-CCCeEEEEeccccchHHHH
Confidence 467777789999999999999999987 5 7999999999998876444
No 69
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.34 E-value=5.1e-12 Score=99.17 Aligned_cols=44 Identities=34% Similarity=0.302 Sum_probs=39.1
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~ 75 (168)
.+++|++++ .+|+||||++++||..++. .|++|+++|+|+++..
T Consensus 113 ~~~vi~lvG-pnGsGKTTt~~kLA~~l~~-~g~~V~Li~~D~~r~~ 156 (318)
T PRK10416 113 KPFVILVVG-VNGVGKTTTIGKLAHKYKA-QGKKVLLAAGDTFRAA 156 (318)
T ss_pred CCeEEEEEC-CCCCcHHHHHHHHHHHHHh-cCCeEEEEecCccchh
Confidence 467888875 8899999999999999998 9999999999997643
No 70
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.32 E-value=1.9e-11 Score=87.98 Aligned_cols=93 Identities=27% Similarity=0.369 Sum_probs=61.3
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCccCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPS 113 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (168)
|.++.+.+|+||||++.++|..+++ .|++|++||+|+.++.....+...... .++.+.+.. .
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~-~g~~v~~i~~D~~~~~~~~~l~~~~~~-------------~~~~~~~~~---~- 63 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK-KGKKVLLVAADTYRPAAIEQLRVLGEQ-------------VGVPVFEEG---E- 63 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCChHHHHHHHHhccc-------------CCeEEEecC---C-
Confidence 3455799999999999999999999 899999999999887765554432211 233333321 0
Q ss_pred CCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973 114 SSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT 151 (168)
Q Consensus 114 ~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~ 151 (168)
... ....+.+.+.......||+||||+|+..
T Consensus 64 ~~~-------~~~~~~~~~~~~~~~~~d~viiDt~g~~ 94 (173)
T cd03115 64 GKD-------PVSIAKRAIEHAREENFDVVIVDTAGRL 94 (173)
T ss_pred CCC-------HHHHHHHHHHHHHhCCCCEEEEECcccc
Confidence 000 1122223333322278999999999975
No 71
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.30 E-value=1.9e-11 Score=98.92 Aligned_cols=48 Identities=29% Similarity=0.322 Sum_probs=40.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCccccc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMM 80 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~ 80 (168)
+.+|++ .+..|+||||++++||..+.+ .|+||++|++|+++++....+
T Consensus 100 ~~vi~l-vG~~GvGKTTtaaKLA~~l~~-~G~kV~lV~~D~~R~aA~eQL 147 (429)
T TIGR01425 100 QNVIMF-VGLQGSGKTTTCTKLAYYYQR-KGFKPCLVCADTFRAGAFDQL 147 (429)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHH-CCCCEEEEcCcccchhHHHHH
Confidence 455555 568999999999999999998 999999999999986554443
No 72
>PRK13768 GTPase; Provisional
Probab=99.29 E-value=7.4e-12 Score=95.48 Aligned_cols=41 Identities=24% Similarity=0.230 Sum_probs=35.8
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~ 75 (168)
+.+++++||+||||++.+++..++. .|++|++||+|++...
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~-~g~~v~~i~~D~~~~~ 44 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEE-QGYDVAIVNLDPAVEY 44 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHh-cCCceEEEECCCcccc
Confidence 4445677999999999999999999 9999999999997644
No 73
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.20 E-value=1.7e-10 Score=91.75 Aligned_cols=92 Identities=20% Similarity=0.269 Sum_probs=61.7
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCc
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (168)
..++|+++++. |+||||++++||..+.+ .|++|.+|++|+++.+....+....+. .++.+...
T Consensus 205 ~~~ii~lvGpt-GvGKTTt~akLA~~l~~-~g~~V~lItaDtyR~gAveQLk~yae~-------------lgvpv~~~-- 267 (407)
T PRK12726 205 NHRIISLIGQT-GVGKTTTLVKLGWQLLK-QNRTVGFITTDTFRSGAVEQFQGYADK-------------LDVELIVA-- 267 (407)
T ss_pred CCeEEEEECCC-CCCHHHHHHHHHHHHHH-cCCeEEEEeCCccCccHHHHHHHHhhc-------------CCCCEEec--
Confidence 47888888865 99999999999999988 899999999999886443333221111 11111110
Q ss_pred cCCCCCCcccCchhHHHHHHHHHHhhcC-CCCcEEEEeCCCCC
Q 030973 110 LVPSSSPVVWRGPMVMSALRKMSREVDW-GNLDILVIDMPPGT 151 (168)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~yD~IiiD~p~~~ 151 (168)
..+..+.+.++.++. +.||+||||||+..
T Consensus 268 -------------~dp~dL~~al~~l~~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 268 -------------TSPAELEEAVQYMTYVNCVDHILIDTVGRN 297 (407)
T ss_pred -------------CCHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 012345555555541 57999999999873
No 74
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.19 E-value=9.3e-11 Score=93.66 Aligned_cols=92 Identities=20% Similarity=0.223 Sum_probs=60.5
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCc
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (168)
..++|+++++ +|+||||+++.||..+.. .|++|.+|++|+++.+....+....+. .++.+....
T Consensus 240 ~~~vI~LVGp-tGvGKTTTiaKLA~~L~~-~GkkVglI~aDt~RiaAvEQLk~yae~-------------lgipv~v~~- 303 (436)
T PRK11889 240 EVQTIALIGP-TGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTVQQLQDYVKT-------------IGFEVIAVR- 303 (436)
T ss_pred CCcEEEEECC-CCCcHHHHHHHHHHHHHH-cCCcEEEEecCCcchHHHHHHHHHhhh-------------cCCcEEecC-
Confidence 3577888766 999999999999999998 999999999999873322222211110 122222110
Q ss_pred cCCCCCCcccCchhHHHHHHHHHHhhcC-CCCcEEEEeCCCCC
Q 030973 110 LVPSSSPVVWRGPMVMSALRKMSREVDW-GNLDILVIDMPPGT 151 (168)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~yD~IiiD~p~~~ 151 (168)
....+.+.+..++. .+||+|||||++..
T Consensus 304 --------------d~~~L~~aL~~lk~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 304 --------------DEAAMTRALTYFKEEARVDYILIDTAGKN 332 (436)
T ss_pred --------------CHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence 12345556655541 36999999999864
No 75
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.13 E-value=1.5e-10 Score=89.63 Aligned_cols=44 Identities=36% Similarity=0.437 Sum_probs=37.6
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhC-C-CeEEEEeCCCCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKC-Q-LKVGLLDADVYGPS 75 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~-g-~rVlliD~D~~~~~ 75 (168)
..++|+|++ .+|+||||++++||..++. . | ++|.+|++|+++..
T Consensus 193 ~~~vi~~vG-ptGvGKTTt~~kLa~~~~~-~~g~~~V~li~~D~~r~~ 238 (282)
T TIGR03499 193 QGGVIALVG-PTGVGKTTTLAKLAARFVL-EHGNKKVALITTDTYRIG 238 (282)
T ss_pred CCeEEEEEC-CCCCCHHHHHHHHHHHHHH-HcCCCeEEEEECCccchh
Confidence 467888875 5899999999999999998 5 5 99999999997743
No 76
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.11 E-value=3.3e-10 Score=72.99 Aligned_cols=33 Identities=58% Similarity=0.734 Sum_probs=29.7
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
.++++++|+||||++.+||..+++ .|++|+++|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-RGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEC
Confidence 344566699999999999999999 999999999
No 77
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.08 E-value=4.6e-10 Score=91.44 Aligned_cols=46 Identities=41% Similarity=0.536 Sum_probs=39.0
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcc
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP 77 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~ 77 (168)
.+.+|.+ .+..|+||||++++||..+.+ .|++|++|++|++++...
T Consensus 94 ~p~vI~l-vG~~GsGKTTtaakLA~~L~~-~g~kV~lV~~D~~R~aa~ 139 (437)
T PRK00771 94 KPQTIML-VGLQGSGKTTTAAKLARYFKK-KGLKVGLVAADTYRPAAY 139 (437)
T ss_pred CCeEEEE-ECCCCCcHHHHHHHHHHHHHH-cCCeEEEecCCCCCHHHH
Confidence 3555555 578999999999999999999 999999999999886543
No 78
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.07 E-value=3.8e-10 Score=90.92 Aligned_cols=44 Identities=25% Similarity=0.295 Sum_probs=36.0
Q ss_pred EEEEecCCCCCChhhHHHHHHHHH-HHhCCCeEEEEeCCCCCCCcc
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVAL-ASKCQLKVGLLDADVYGPSVP 77 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~l-a~~~g~rVlliD~D~~~~~l~ 77 (168)
.+.++.+.+|+||||++++||..+ .. .|++|+++++|+++....
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~-~G~~V~Lit~Dt~R~aA~ 268 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLH-MGKSVSLYTTDNYRIAAI 268 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEecccchhhhHH
Confidence 344446899999999999999876 45 799999999999885433
No 79
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.06 E-value=4.6e-10 Score=91.38 Aligned_cols=43 Identities=37% Similarity=0.448 Sum_probs=36.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHH-HhCCCeEEEEeCCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYGP 74 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la-~~~g~rVlliD~D~~~~ 74 (168)
.++++|++ .+|+||||++++||..++ ...|++|.+||+|+++.
T Consensus 221 ~~~i~~vG-ptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~ 264 (424)
T PRK05703 221 GGVVALVG-PTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI 264 (424)
T ss_pred CcEEEEEC-CCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH
Confidence 56788875 599999999999999998 32689999999999764
No 80
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.06 E-value=5e-10 Score=89.63 Aligned_cols=96 Identities=24% Similarity=0.277 Sum_probs=64.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (168)
.+.|.+.-+--|+||||+|+.||++|.+ .|+||++|-+|.++|..-.-|..-.+. -++.+.+.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q-------------~~v~~f~~~-- 162 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQ-------------VGVPFFGSG-- 162 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHH-------------cCCceecCC--
Confidence 4455555677789999999999999999 999999999999998765554322211 233333221
Q ss_pred CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT 151 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~ 151 (168)
.... ..+-..+.++.++...||+|||||...+
T Consensus 163 -~~~~--------Pv~Iak~al~~ak~~~~DvvIvDTAGRl 194 (451)
T COG0541 163 -TEKD--------PVEIAKAALEKAKEEGYDVVIVDTAGRL 194 (451)
T ss_pred -CCCC--------HHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 0011 1124455566666467999999999864
No 81
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=99.06 E-value=5.6e-10 Score=82.07 Aligned_cols=95 Identities=26% Similarity=0.276 Sum_probs=57.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (168)
+++|++++ -.|+||||+++.||+++.. .|++|.+|-+|.++.+....+..-.+ .-++.+....
T Consensus 1 p~vi~lvG-ptGvGKTTt~aKLAa~~~~-~~~~v~lis~D~~R~ga~eQL~~~a~-------------~l~vp~~~~~-- 63 (196)
T PF00448_consen 1 PKVIALVG-PTGVGKTTTIAKLAARLKL-KGKKVALISADTYRIGAVEQLKTYAE-------------ILGVPFYVAR-- 63 (196)
T ss_dssp SEEEEEEE-STTSSHHHHHHHHHHHHHH-TT--EEEEEESTSSTHHHHHHHHHHH-------------HHTEEEEESS--
T ss_pred CEEEEEEC-CCCCchHhHHHHHHHHHhh-ccccceeecCCCCCccHHHHHHHHHH-------------Hhccccchhh--
Confidence 35677755 5689999999999999999 79999999999988554333321111 0223332211
Q ss_pred CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT 151 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~ 151 (168)
. . ....+.+.+.++..+.++||+||||||...
T Consensus 64 -~-~-------~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~ 95 (196)
T PF00448_consen 64 -T-E-------SDPAEIAREALEKFRKKGYDLVLIDTAGRS 95 (196)
T ss_dssp -T-T-------SCHHHHHHHHHHHHHHTTSSEEEEEE-SSS
T ss_pred -c-c-------hhhHHHHHHHHHHHhhcCCCEEEEecCCcc
Confidence 0 0 011234445555444367999999998753
No 82
>PRK14974 cell division protein FtsY; Provisional
Probab=99.01 E-value=2.2e-09 Score=84.82 Aligned_cols=43 Identities=30% Similarity=0.380 Sum_probs=36.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~ 75 (168)
+.+|.| .+..|+||||++++||..+.+ .|++|+++++|.++..
T Consensus 140 ~~vi~~-~G~~GvGKTTtiakLA~~l~~-~g~~V~li~~Dt~R~~ 182 (336)
T PRK14974 140 PVVIVF-VGVNGTGKTTTIAKLAYYLKK-NGFSVVIAAGDTFRAG 182 (336)
T ss_pred CeEEEE-EcCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcCcHH
Confidence 455555 569999999999999999998 9999999999987644
No 83
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.00 E-value=5.1e-10 Score=79.95 Aligned_cols=32 Identities=31% Similarity=0.462 Sum_probs=29.8
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
|++..+|+||||++.+||..|++ +|+||.++.
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~-~g~~V~~~k 33 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKK-AGYSVGYYK 33 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHH-CCCcEEEEE
Confidence 57889999999999999999999 999999974
No 84
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=98.99 E-value=8.4e-10 Score=90.87 Aligned_cols=75 Identities=23% Similarity=0.195 Sum_probs=65.0
Q ss_pred eeecCceeeccccCCccc-ccCCCCeEEEEecCCC---CCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973 8 FTRLGGVRYYAAFGSKDL-KIDGVKDVIAVASGKG---GVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID 83 (168)
Q Consensus 8 ~e~~~~~r~~~~~~~~~~-~~~~~~~vI~v~s~kg---G~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~ 83 (168)
.|.|+.+|+++.+...+. ......|+|.|+|..+ |+||||++.|||..|++ .|+||+++ .+.|+++..|+..
T Consensus 31 ~e~Yg~~kaki~~~~~~~~~~~~~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~-~Gkkvlli---LR~Psl~~~fg~k 106 (557)
T PRK13505 31 LEPYGKYKAKISLDKIKALKDKKDGKLILVTAINPTPAGEGKSTVTVGLGDALNK-IGKKTVIA---LREPSLGPVFGIK 106 (557)
T ss_pred HHhccCcceeeCHHHHhhhccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHH-cCCeEEEE---EecCCcccccCCC
Confidence 378999999998876543 2233589999999999 99999999999999999 99999999 8899999999987
Q ss_pred CCC
Q 030973 84 QKP 86 (168)
Q Consensus 84 ~~~ 86 (168)
...
T Consensus 107 gga 109 (557)
T PRK13505 107 GGA 109 (557)
T ss_pred CCc
Confidence 765
No 85
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.97 E-value=2.8e-09 Score=82.06 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=36.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
|++|+|++.| |+||||++.+|+..|.+ +| +|.+|+.|+..
T Consensus 1 M~~i~i~G~~-gSGKTTLi~~Li~~L~~-~G-~V~~IKhd~h~ 40 (274)
T PRK14493 1 MKVLSIVGYK-ATGKTTLVERLVDRLSG-RG-RVGTVKHMDTE 40 (274)
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHHHHh-CC-CEEEEEEcCCC
Confidence 5789998885 99999999999999999 99 89999999854
No 86
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.96 E-value=1.1e-08 Score=79.84 Aligned_cols=44 Identities=32% Similarity=0.470 Sum_probs=39.2
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~ 74 (168)
..+++|.|+ +.+|+||||++.+|+..+.+ .|++|.+|++|++.+
T Consensus 32 ~~~~~i~i~-G~~G~GKttl~~~l~~~~~~-~~~~v~~i~~D~~~~ 75 (300)
T TIGR00750 32 GNAHRVGIT-GTPGAGKSTLLEALGMELRR-RGLKVAVIAVDPSSP 75 (300)
T ss_pred CCceEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCCC
Confidence 347788886 88999999999999999999 999999999999764
No 87
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.90 E-value=6.2e-09 Score=86.09 Aligned_cols=44 Identities=32% Similarity=0.357 Sum_probs=37.3
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeCCCCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADVYGPS 75 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~D~~~~~ 75 (168)
.+++|+|++ .+|+||||++.+||..+.. . +++|.+|++|.++.+
T Consensus 349 ~G~vIaLVG-PtGvGKTTtaakLAa~la~-~~~gkkVaLIdtDtyRig 394 (559)
T PRK12727 349 RGGVIALVG-PTGAGKTTTIAKLAQRFAA-QHAPRDVALVTTDTQRVG 394 (559)
T ss_pred CCCEEEEEC-CCCCCHHHHHHHHHHHHHH-hcCCCceEEEeccccccc
Confidence 478888875 5799999999999998887 5 589999999997743
No 88
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.89 E-value=1.1e-08 Score=82.18 Aligned_cols=49 Identities=29% Similarity=0.406 Sum_probs=37.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHh---CCCeEEEEeCCCCCCCccccc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASK---CQLKVGLLDADVYGPSVPMMM 80 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~---~g~rVlliD~D~~~~~l~~~~ 80 (168)
+++|++ .+..|+||||+++.||..+... .|++|.+|++|+++......+
T Consensus 174 ~~vi~l-vGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL 225 (388)
T PRK12723 174 KRVFIL-VGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQI 225 (388)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHH
Confidence 455665 5666999999999999998741 478999999999875544333
No 89
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=9e-09 Score=81.38 Aligned_cols=100 Identities=19% Similarity=0.161 Sum_probs=65.7
Q ss_pred CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeec
Q 030973 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSM 107 (168)
Q Consensus 28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (168)
.+..+.|.++-+--|+||||+|+.||+++.+ .|+||++|=+|..++....-+...... ..+.+...
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kk-kG~K~~LvcaDTFRagAfDQLkqnA~k-------------~~iP~ygs 162 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKK-KGYKVALVCADTFRAGAFDQLKQNATK-------------ARVPFYGS 162 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHHHHh-cCCceeEEeecccccchHHHHHHHhHh-------------hCCeeEec
Confidence 3334445555667789999999999999999 999999999999887665555433222 11222211
Q ss_pred CccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973 108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG 152 (168)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~ 152 (168)
+ .. ........+-++..+.++||+||+||...+-
T Consensus 163 y--te---------~dpv~ia~egv~~fKke~fdvIIvDTSGRh~ 196 (483)
T KOG0780|consen 163 Y--TE---------ADPVKIASEGVDRFKKENFDVIIVDTSGRHK 196 (483)
T ss_pred c--cc---------cchHHHHHHHHHHHHhcCCcEEEEeCCCchh
Confidence 1 01 1112344455555555899999999998753
No 90
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.76 E-value=1.6e-08 Score=78.83 Aligned_cols=96 Identities=22% Similarity=0.206 Sum_probs=66.6
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCc
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (168)
++-||.| -+-.|+||||+.+.||+.|-+ .|+||++.-+|..+...-.-+..+.++ -++.++...
T Consensus 138 ~p~Vil~-vGVNG~GKTTTIaKLA~~l~~-~g~~VllaA~DTFRAaAiEQL~~w~er-------------~gv~vI~~~- 201 (340)
T COG0552 138 KPFVILF-VGVNGVGKTTTIAKLAKYLKQ-QGKSVLLAAGDTFRAAAIEQLEVWGER-------------LGVPVISGK- 201 (340)
T ss_pred CcEEEEE-EecCCCchHhHHHHHHHHHHH-CCCeEEEEecchHHHHHHHHHHHHHHH-------------hCCeEEccC-
Confidence 3555655 567899999999999999999 999999999999886655556555443 455566532
Q ss_pred cCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT 151 (168)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~ 151 (168)
...++. ...-+.++..+.+.||+|||||...+
T Consensus 202 -~G~DpA---------aVafDAi~~Akar~~DvvliDTAGRL 233 (340)
T COG0552 202 -EGADPA---------AVAFDAIQAAKARGIDVVLIDTAGRL 233 (340)
T ss_pred -CCCCcH---------HHHHHHHHHHHHcCCCEEEEeCcccc
Confidence 122221 22223333333389999999999876
No 91
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=98.73 E-value=5.7e-08 Score=75.36 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973 48 TAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID 83 (168)
Q Consensus 48 ~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~ 83 (168)
+|+++|..+++ .|+|||+||+|+++ +++..||.+
T Consensus 1 ~a~a~a~~~a~-~g~~vllv~~Dp~~-~l~~~~~~~ 34 (284)
T TIGR00345 1 ISCATAIRLAE-QGKKVLLVSTDPAH-SLSDVFEQE 34 (284)
T ss_pred CHHHHHHHHHH-CCCeEEEEECCCCC-CHHHHhCCc
Confidence 47899999999 99999999999986 888888764
No 92
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.70 E-value=2.7e-08 Score=70.99 Aligned_cols=108 Identities=21% Similarity=0.236 Sum_probs=71.9
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCcee----ecccCCeee
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMV----PIENYGVKC 104 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 104 (168)
++...+.++.+-+|+||||+|..|...|.+ .|+.|.++|.|.-+..|..-+|.+.+.....+..+. .....++-+
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~-~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~iv 98 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFA-KGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIV 98 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHH-cCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEE
Confidence 334567777899999999999999999999 999999999999998988888877664333321111 111233333
Q ss_pred eecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCC
Q 030973 105 MSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPP 149 (168)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~ 149 (168)
+.+- ++| . ....+..++++.+ ..|=-|+||||-
T Consensus 99 iva~-ISP--~------r~~R~~aR~~~~~---~~FiEVyV~~pl 131 (197)
T COG0529 99 IVAF-ISP--Y------REDRQMARELLGE---GEFIEVYVDTPL 131 (197)
T ss_pred EEEe-eCc--c------HHHHHHHHHHhCc---CceEEEEeCCCH
Confidence 3221 111 1 1233444555533 568889999996
No 93
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.66 E-value=2.1e-07 Score=71.54 Aligned_cols=42 Identities=29% Similarity=0.361 Sum_probs=36.6
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
...++++++ ++|+||||+...++..+.. .+++|.+|++|.++
T Consensus 74 ~~~~i~~~G-~~g~GKTtl~~~l~~~l~~-~~~~v~~i~~D~~r 115 (270)
T PRK06731 74 EVQTIALIG-PTGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSR 115 (270)
T ss_pred CCCEEEEEC-CCCCcHHHHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence 456777765 5999999999999999988 89999999999876
No 94
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.65 E-value=1.6e-08 Score=76.82 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=73.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (168)
.+++.++-+-.|+||||++..|-.++.. .+.+..+|.+||.-.++..-.+++-..++.-.+. ...++ +-|+|-+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~-~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEv---MkqY~--LGPNGgI 91 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHA-KKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEV---MKQYQ--LGPNGGI 91 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhh-ccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHH---HHHhC--CCCCcch
Confidence 4566666789999999999999999999 8999999999997766554444333222211000 00111 1222211
Q ss_pred CCCCCCcccCchhHHHHHH---HHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhhcc
Q 030973 111 VPSSSPVVWRGPMVMSALR---KMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQ 163 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~---~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~~~ 163 (168)
. ..-......+. .+++... +.+||||||||..+...++++...|.
T Consensus 92 ~-------TsLNLF~tk~dqv~~~iek~~-~~~~~~liDTPGQIE~FtWSAsGsII 139 (366)
T KOG1532|consen 92 V-------TSLNLFATKFDQVIELIEKRA-EEFDYVLIDTPGQIEAFTWSASGSII 139 (366)
T ss_pred h-------hhHHHHHHHHHHHHHHHHHhh-cccCEEEEcCCCceEEEEecCCccch
Confidence 1 11123344455 5666666 88999999999976555555544443
No 95
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=98.63 E-value=5e-08 Score=79.77 Aligned_cols=74 Identities=22% Similarity=0.158 Sum_probs=57.4
Q ss_pred eecCceeeccccCCccc-ccCCCCeEEEEecCCC---CCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC
Q 030973 9 TRLGGVRYYAAFGSKDL-KIDGVKDVIAVASGKG---GVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (168)
Q Consensus 9 e~~~~~r~~~~~~~~~~-~~~~~~~vI~v~s~kg---G~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~ 84 (168)
|-|...+..+.+...+. ......|+|.|+|..+ |+||||++.+||..|++ .|+||+++ .+.|++...|+...
T Consensus 15 ~~yG~~kaKi~~~~~~~~~~~~~~k~IlVTs~~PTp~GEGKTT~si~La~~la~-~Gkk~l~~---LR~PSlg~~fg~kg 90 (524)
T cd00477 15 EPYGKYKAKVDLDVLKRLEKRPDGKLILVTAITPTPAGEGKTTTTIGLAQALNA-HGKKAIAC---LREPSLGPTFGIKG 90 (524)
T ss_pred HhccCcceeecHHHHhhhccCCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHH-hCCcEEEE---EecCCcCcccCCCC
Confidence 33444454444433221 1233589999999999 99999999999999999 99999988 88899999999887
Q ss_pred CC
Q 030973 85 KP 86 (168)
Q Consensus 85 ~~ 86 (168)
..
T Consensus 91 ga 92 (524)
T cd00477 91 GA 92 (524)
T ss_pred CC
Confidence 65
No 96
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.57 E-value=1.1e-06 Score=69.50 Aligned_cols=106 Identities=19% Similarity=0.144 Sum_probs=63.3
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcc-cccccCCCCCccccCceeecccCCeeeeec
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP-MMMKIDQKPEVTKDMKMVPIENYGVKCMSM 107 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (168)
+...+|.+ .+.+|+||||++..|+..+.. .|++|.+|..|++.+-.. .++|..... .. ....++..+.+.
T Consensus 54 ~~~~~igi-~G~~GaGKSTl~~~l~~~l~~-~g~~v~vi~~Dp~s~~~~gallgd~~r~--~~-----~~~~~~~~~r~~ 124 (332)
T PRK09435 54 GNALRIGI-TGVPGVGKSTFIEALGMHLIE-QGHKVAVLAVDPSSTRTGGSILGDKTRM--ER-----LSRHPNAFIRPS 124 (332)
T ss_pred CCcEEEEE-ECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeCCCccccchhhhchHhHH--Hh-----hcCCCCeEEEec
Confidence 34667777 456899999999999999998 999999999999764321 122211110 00 001122222221
Q ss_pred CccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973 108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT 151 (168)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~ 151 (168)
+ ..... ......+.+.+..+....||+|||||++.-
T Consensus 125 ~----~~~~l----~~~a~~~~~~~~~~~~~g~d~viieT~Gv~ 160 (332)
T PRK09435 125 P----SSGTL----GGVARKTRETMLLCEAAGYDVILVETVGVG 160 (332)
T ss_pred C----Ccccc----cchHHHHHHHHHHHhccCCCEEEEECCCCc
Confidence 1 00000 112345555555555468999999999854
No 97
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.54 E-value=2.3e-07 Score=79.98 Aligned_cols=45 Identities=31% Similarity=0.450 Sum_probs=36.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCC-CeEEEEeCCCCCCCc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVYGPSV 76 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g-~rVlliD~D~~~~~l 76 (168)
.++|+|+ +..|+||||+++.||..+....| ++|.+|++|.++...
T Consensus 185 g~Vi~lV-GpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA 230 (767)
T PRK14723 185 GGVLALV-GPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGA 230 (767)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHH
Confidence 5677775 56789999999999998854266 699999999877544
No 98
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=98.52 E-value=1.5e-07 Score=77.75 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=50.1
Q ss_pred CCCeEEEEecCCC---CCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC
Q 030973 29 GVKDVIAVASGKG---GVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP 86 (168)
Q Consensus 29 ~~~~vI~v~s~kg---G~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~ 86 (168)
...|+|.|+|..+ |+||||++.+||..|++ .|+|| ||+ .+.|++...|+.....
T Consensus 52 ~~~k~IlVTs~~PTp~GEGKTT~si~La~~la~-~Gk~~--i~~-LR~Pslg~~fg~kgga 108 (578)
T PRK13506 52 PKGKLVLVTAITPTPLGEGKTVTTIGLTQGLNA-LGQKV--CAC-IRQPSMGPVFGVKGGA 108 (578)
T ss_pred CCCeEEEEEecCCCCCCCCHHHHHHHHHHHHHH-hCCce--EEE-eccCCcCCccCCCCCC
Confidence 3589999999999 99999999999999999 99999 888 9999999999988776
No 99
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.52 E-value=1.7e-07 Score=69.74 Aligned_cols=101 Identities=12% Similarity=0.111 Sum_probs=61.5
Q ss_pred ecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCccCCCCCC
Q 030973 37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSP 116 (168)
Q Consensus 37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 116 (168)
+-+.+|+||||-|..+...++. .|++|.+|.+||.+.++..-++. ++.+...+.... ..+.+-|+ ...
T Consensus 7 VIGPPgSGKsTYc~g~~~fls~-~gr~~~vVNLDPaNd~~~Y~~~v----~I~elit~edvm-~~~~LGPN------g~l 74 (290)
T KOG1533|consen 7 VIGPPGSGKSTYCNGMSQFLSA-IGRPVAVVNLDPANDNLPYECAV----DIRELITVEDVM-EELGLGPN------GAL 74 (290)
T ss_pred EEcCCCCCccchhhhHHHHHHH-hCCceEEEecCCcccCCCCCCcc----cHHHHccHHHHH-HHhCCCCc------hhH
Confidence 4578999999999999999999 99999999999988665443332 222211111110 11111111 111
Q ss_pred cccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCC
Q 030973 117 VVWRGPMVMSALRKMSREVDWGNLDILVIDMPPG 150 (168)
Q Consensus 117 ~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~ 150 (168)
..+. +.....++.+++.++.....|+|+|||..
T Consensus 75 ~yc~-E~l~~~idwl~~~l~~~~~~Y~lFDcPGQ 107 (290)
T KOG1533|consen 75 KYCM-EYLEANIDWLLEKLKPLTDHYVLFDCPGQ 107 (290)
T ss_pred HHHH-HHHHhhhHHHHHHhhhccCcEEEEeCCCc
Confidence 1111 22333445566666634788999999986
No 100
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=98.51 E-value=1e-06 Score=70.35 Aligned_cols=108 Identities=21% Similarity=0.255 Sum_probs=64.6
Q ss_pred CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCc----eeecccCCee
Q 030973 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMK----MVPIENYGVK 103 (168)
Q Consensus 28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 103 (168)
.....++.+++++ .+||||+++-||..+-+ +|+||.+||+|+.++.+. .+..-.+.-... ..........
T Consensus 70 ~~~~~~vmvvG~v-DSGKSTLt~~LaN~~l~-rG~~v~iiDaDvGQ~ei~----pPg~ISL~~~~s~~~~L~~l~~~~~~ 143 (398)
T COG1341 70 AGKVGVVMVVGPV-DSGKSTLTTYLANKLLA-RGRKVAIIDADVGQSEIG----PPGFISLAFPESPVISLSELEPFTLY 143 (398)
T ss_pred ccCCcEEEEECCc-CcCHHHHHHHHHHHHhh-cCceEEEEeCCCCCcccC----CCceEEeecccCCCCCHHHcCccceE
Confidence 3345666666655 79999999999999999 999999999999775421 111111110000 0111111222
Q ss_pred eeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCC
Q 030973 104 CMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPP 149 (168)
Q Consensus 104 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~ 149 (168)
+ .|.+.+.... .........+.+.++ +.-|+||||||.
T Consensus 144 F--vG~isP~~~~-----~~~i~~v~rL~~~a~-~~~~~ilIdT~G 181 (398)
T COG1341 144 F--VGSISPQGFP-----GRYIAGVARLVDLAK-KEADFILIDTDG 181 (398)
T ss_pred E--EeccCCCCCh-----HHHHHHHHHHHHHhh-ccCCEEEEcCCC
Confidence 2 2222222221 234456677777777 667999999998
No 101
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.50 E-value=7.1e-09 Score=78.40 Aligned_cols=39 Identities=28% Similarity=0.311 Sum_probs=28.7
Q ss_pred CCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCccc
Q 030973 39 GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPM 78 (168)
Q Consensus 39 ~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~ 78 (168)
+..|+||||.+.++..++.. .|++|.+|.+||....+..
T Consensus 3 GpaGSGKTT~~~~~~~~~~~-~~~~~~~vNLDPa~~~~~y 41 (238)
T PF03029_consen 3 GPAGSGKTTFCKGLSEWLES-NGRDVYIVNLDPAVENLPY 41 (238)
T ss_dssp ESTTSSHHHHHHHHHHHHTT-T-S-EEEEE--TT-S--SS
T ss_pred CCCCCCHHHHHHHHHHHHHh-ccCCceEEEcchHhccccc
Confidence 56799999999999999999 9999999999998755433
No 102
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.47 E-value=4.2e-07 Score=72.77 Aligned_cols=45 Identities=38% Similarity=0.457 Sum_probs=35.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCC-CeEEEEeCCCCCCCc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVYGPSV 76 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g-~rVlliD~D~~~~~l 76 (168)
..++++ .+..|+||||+++.||..+....| ++|.+|.+|.+..+-
T Consensus 137 g~ii~l-vGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga 182 (374)
T PRK14722 137 GGVFAL-MGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGG 182 (374)
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccH
Confidence 556665 677899999999999998765246 699999999986443
No 103
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=98.46 E-value=1.6e-07 Score=70.11 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=30.7
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli 67 (168)
|.|++...|+|||+++++|++.|.+ +|++|.++
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~-~g~~v~~~ 34 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALRE-AGYSVAGY 34 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHH-cCCceEEE
Confidence 6788999999999999999999999 99999874
No 104
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.39 E-value=5.7e-07 Score=72.04 Aligned_cols=89 Identities=25% Similarity=0.291 Sum_probs=60.0
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHH--HhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeec
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALA--SKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSM 107 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la--~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (168)
+.++|+++++ -||||||+.+.||+.+. . ..+||-+|-+|.++-+...-+..-.+ . -++.+.-
T Consensus 202 ~~~vi~LVGP-TGVGKTTTlAKLAar~~~~~-~~~kVaiITtDtYRIGA~EQLk~Ya~-----i--------m~vp~~v- 265 (407)
T COG1419 202 QKRVIALVGP-TGVGKTTTLAKLAARYVMLK-KKKKVAIITTDTYRIGAVEQLKTYAD-----I--------MGVPLEV- 265 (407)
T ss_pred cCcEEEEECC-CCCcHHHHHHHHHHHHHhhc-cCcceEEEEeccchhhHHHHHHHHHH-----H--------hCCceEE-
Confidence 3778888765 48999999999999999 4 67899999999988554443321111 0 0111110
Q ss_pred CccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCC
Q 030973 108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPG 150 (168)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~ 150 (168)
-..+..|.+.+..+ .+||+|+|||..-
T Consensus 266 --------------v~~~~el~~ai~~l--~~~d~ILVDTaGr 292 (407)
T COG1419 266 --------------VYSPKELAEAIEAL--RDCDVILVDTAGR 292 (407)
T ss_pred --------------ecCHHHHHHHHHHh--hcCCEEEEeCCCC
Confidence 11245666666666 4789999999874
No 105
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.39 E-value=1.2e-06 Score=61.28 Aligned_cols=109 Identities=21% Similarity=0.207 Sum_probs=72.6
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceee----cccCCeee
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVP----IENYGVKC 104 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 104 (168)
++.-.+.++.+-+|+||||+|++|...|-+ +|+-...+|.|--++++..-++...+.....+..+-. ....++-+
T Consensus 28 ~qkGcviWiTGLSgSGKStlACaL~q~L~q-rgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENIRRigeVaKLFADag~ic 106 (207)
T KOG0635|consen 28 KQKGCVIWITGLSGSGKSTLACALSQALLQ-RGKLTYILDGDNVRHGLNKDLGFKAEDRNENIRRIGEVAKLFADAGVIC 106 (207)
T ss_pred cCCCcEEEEeccCCCCchhHHHHHHHHHHh-cCceEEEecCcccccccccccCcchhhhhhhHHHHHHHHHHHhccceee
Confidence 334445566788999999999999999999 9999999999999989988888776653333222111 11223333
Q ss_pred eecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCC
Q 030973 105 MSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPG 150 (168)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~ 150 (168)
+..- + .+.....++.++++.+ ..|=-|++|+|-.
T Consensus 107 iaSl-I--------SPYR~dRdacRel~~~---~~FiEvfmdvpl~ 140 (207)
T KOG0635|consen 107 IASL-I--------SPYRKDRDACRELLPE---GDFIEVFMDVPLE 140 (207)
T ss_pred eehh-c--------CchhccHHHHHHhccC---CCeEEEEecCcHH
Confidence 3221 1 1112345667777654 5577789999854
No 106
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.34 E-value=1.7e-06 Score=63.57 Aligned_cols=108 Identities=15% Similarity=0.134 Sum_probs=67.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (168)
++.-.++-+..|+||||.|.++-.+.-. .|+++-+|.+||.+ ..|+.+...++.+...+...... +++-|+|
T Consensus 2 m~ya~lV~GpAgSGKSTyC~~~~~h~e~-~gRs~~vVNLDPAa----e~f~y~~~iDiRdlIsvdDVmEd-l~~GPNG-- 73 (273)
T KOG1534|consen 2 MRYAQLVMGPAGSGKSTYCSSMYEHCET-VGRSVHVVNLDPAA----EHFNYPVTIDIRDLISVDDVMED-LDLGPNG-- 73 (273)
T ss_pred CceeEEEEccCCCCcchHHHHHHHHHHh-hCceeEEeecCHHH----HhhCCcccccHHHhccHHHHHHH-hccCCCc--
Confidence 3445566788899999999999999988 99999999999976 33555555555443332222211 3333333
Q ss_pred CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT 151 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~ 151 (168)
.-..+. +...+.++.+-++...-+-||+|+|||..+
T Consensus 74 ----gLv~cm-Eyl~~NldwL~~~~Gd~eddylifDcPGQI 109 (273)
T KOG1534|consen 74 ----GLVYCM-EYLLENLDWLEEEIGDVEDDYLIFDCPGQI 109 (273)
T ss_pred ----cchhHH-HHHHHHHHHHHhhccCccCCEEEEeCCCee
Confidence 211111 223344555544443235689999999864
No 107
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.33 E-value=7.5e-06 Score=63.19 Aligned_cols=104 Identities=23% Similarity=0.271 Sum_probs=65.2
Q ss_pred CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcc-cccccCCCCCccccCceeecc-cCCeeee
Q 030973 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP-MMMKIDQKPEVTKDMKMVPIE-NYGVKCM 105 (168)
Q Consensus 28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 105 (168)
.....+|.++ +.+|+||||+.-.|...|.+ .|+||-+|--||..|-.. .++|-. ....... .+++.+-
T Consensus 48 tG~a~viGIT-G~PGaGKSTli~~L~~~l~~-~G~rVaVlAVDPSSp~TGGsiLGDR--------iRM~~~~~~~~vFiR 117 (323)
T COG1703 48 TGNAHVIGIT-GVPGAGKSTLIEALGRELRE-RGHRVAVLAVDPSSPFTGGSILGDR--------IRMQRLAVDPGVFIR 117 (323)
T ss_pred CCCCcEEEec-CCCCCchHHHHHHHHHHHHH-CCcEEEEEEECCCCCCCCccccccH--------hhHHhhccCCCeEEe
Confidence 4558899995 67899999999999999999 999999999999764321 223311 1111111 2444444
Q ss_pred ecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCC
Q 030973 106 SMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPP 149 (168)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~ 149 (168)
|.. +... . -..+....+++..+....||+|||.|-.
T Consensus 118 s~~----srG~---l-GGlS~at~~~i~~ldAaG~DvIIVETVG 153 (323)
T COG1703 118 SSP----SRGT---L-GGLSRATREAIKLLDAAGYDVIIVETVG 153 (323)
T ss_pred ecC----CCcc---c-hhhhHHHHHHHHHHHhcCCCEEEEEecC
Confidence 321 1111 0 1233444555554444689999999876
No 108
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.28 E-value=4.6e-06 Score=68.76 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=37.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
++.|.|++.++|+||||++++|++.|++ +|++|..+...+
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~-~G~~V~~fK~Gp 42 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRR-RGLRVQPFKVGP 42 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHh-CCCCcceeecCC
Confidence 6789999999999999999999999999 999999998854
No 109
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.28 E-value=6.2e-06 Score=61.34 Aligned_cols=41 Identities=29% Similarity=0.405 Sum_probs=35.3
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..+..+.+.+|+||||++.++|..++. .|.+|++||++...
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~-~g~~v~yi~~e~~~ 59 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAG-QGKKVAYIDTEGLS 59 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEECCCCC
Confidence 445556789999999999999999999 89999999998543
No 110
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.26 E-value=1.3e-06 Score=62.79 Aligned_cols=41 Identities=32% Similarity=0.366 Sum_probs=35.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+.+|.+ .+-+|+||||++..|+..+.. .|.+|.+||.|...
T Consensus 4 g~~i~~-~G~~GsGKST~a~~la~~l~~-~g~~v~~id~D~~~ 44 (175)
T PRK00889 4 GVTVWF-TGLSGAGKTTIARALAEKLRE-AGYPVEVLDGDAVR 44 (175)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCeEEEEcCccHH
Confidence 455555 588899999999999999988 89999999999754
No 111
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.26 E-value=2.3e-06 Score=70.66 Aligned_cols=44 Identities=39% Similarity=0.493 Sum_probs=35.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCC-CeEEEEeCCCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVYGPS 75 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g-~rVlliD~D~~~~~ 75 (168)
+++++++ +..|+||||++..||..+....| ++|.+|++|+++.+
T Consensus 256 g~Vi~Lv-GpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~Rig 300 (484)
T PRK06995 256 GGVFALM-GPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIG 300 (484)
T ss_pred CcEEEEE-CCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchh
Confidence 5677775 56699999999999998864255 59999999997643
No 112
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.25 E-value=2.9e-06 Score=64.37 Aligned_cols=103 Identities=25% Similarity=0.330 Sum_probs=58.9
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcc-cccccCCCCCccccCceee-cccCCeeeee
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP-MMMKIDQKPEVTKDMKMVP-IENYGVKCMS 106 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ 106 (168)
.+..+|++ ++.+|+||||+.-.|+..+.+ .|+||-++-.||..|-.. .+|| |...... ...+++++=|
T Consensus 27 g~a~~iGi-TG~PGaGKSTli~~l~~~~~~-~g~~VaVlAVDPSSp~tGGAlLG--------DRiRM~~~~~d~~vfIRS 96 (266)
T PF03308_consen 27 GRAHVIGI-TGPPGAGKSTLIDALIRELRE-RGKRVAVLAVDPSSPFTGGALLG--------DRIRMQELSRDPGVFIRS 96 (266)
T ss_dssp T-SEEEEE-EE-TTSSHHHHHHHHHHHHHH-TT--EEEEEE-GGGGCC---SS----------GGGCHHHHTSTTEEEEE
T ss_pred CCceEEEe-eCCCCCcHHHHHHHHHHHHhh-cCCceEEEEECCCCCCCCCcccc--------cHHHhcCcCCCCCEEEee
Confidence 34789999 567899999999999999999 999999999999764322 2333 1111221 1234555544
Q ss_pred cCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCC
Q 030973 107 MGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPP 149 (168)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~ 149 (168)
.. ..... -.......+.+..+..-.||+|||.|-.
T Consensus 97 ~a----tRG~l----GGls~~t~~~v~ll~aaG~D~IiiETVG 131 (266)
T PF03308_consen 97 MA----TRGSL----GGLSRATRDAVRLLDAAGFDVIIIETVG 131 (266)
T ss_dssp E-------SSH----HHHHHHHHHHHHHHHHTT-SEEEEEEES
T ss_pred cC----cCCCC----CCccHhHHHHHHHHHHcCCCEEEEeCCC
Confidence 32 11110 1233444445444443679999999875
No 113
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.19 E-value=1.1e-05 Score=60.32 Aligned_cols=38 Identities=32% Similarity=0.385 Sum_probs=34.3
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
..+..+++.+|+|||++|.++|...++ .|.+|++||++
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~-~~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAK-NGKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEECC
Confidence 445566789999999999999999999 99999999999
No 114
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.16 E-value=1.6e-05 Score=58.65 Aligned_cols=38 Identities=32% Similarity=0.323 Sum_probs=33.5
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+..+.+.+|+|||+++..++...++ .|.+|++||++.
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~-~g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAAR-QGKKVVYIDTEG 50 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCC
Confidence 44555679999999999999999999 899999999984
No 115
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=98.15 E-value=1.1e-05 Score=57.13 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=31.7
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
|+|+ +..|+||||++..|...+.. .|+||.+|..|..
T Consensus 2 i~i~-G~~gsGKTtl~~~l~~~l~~-~G~~V~viK~~~~ 38 (155)
T TIGR00176 2 LQIV-GPKNSGKTTLIERLVKALKA-RGYRVATIKHDHH 38 (155)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHh-cCCeEEEEecccc
Confidence 5555 45699999999999999998 8999999998753
No 116
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=4.6e-06 Score=67.88 Aligned_cols=102 Identities=19% Similarity=0.230 Sum_probs=67.4
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCc
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (168)
++=+|+| .+-.||||||--+.+|++|-+ .+.|||+.-||+.+.+.-.-|+...++ +.... . .-+.+...|+
T Consensus 377 rPYVi~f-vGVNGVGKSTNLAKIayWLlq-NkfrVLIAACDTFRsGAvEQLrtHv~r-l~~l~---~---~~v~lfekGY 447 (587)
T KOG0781|consen 377 RPYVISF-VGVNGVGKSTNLAKIAYWLLQ-NKFRVLIAACDTFRSGAVEQLRTHVER-LSALH---G---TMVELFEKGY 447 (587)
T ss_pred CCeEEEE-EeecCccccchHHHHHHHHHh-CCceEEEEeccchhhhHHHHHHHHHHH-HHHhc---c---chhHHHhhhc
Confidence 4556666 567899999999999999999 999999999999887655555543322 10000 0 1111111121
Q ss_pred cCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT 151 (168)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~ 151 (168)
. -.......+.+++.+.+.||+|+|||...+
T Consensus 448 ------g-----kd~a~vak~AI~~a~~~gfDVvLiDTAGR~ 478 (587)
T KOG0781|consen 448 ------G-----KDAAGVAKEAIQEARNQGFDVVLIDTAGRM 478 (587)
T ss_pred ------C-----CChHHHHHHHHHHHHhcCCCEEEEeccccc
Confidence 1 112345567777777688999999999875
No 117
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.07 E-value=4.3e-06 Score=59.15 Aligned_cols=104 Identities=18% Similarity=0.135 Sum_probs=60.6
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCc----eeecccCCeeeeecC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMK----MVPIENYGVKCMSMG 108 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~ 108 (168)
.+.++++.+|+||||+|..|...|.. .|.+|.++|.|.-...+..-++...+........ .......++.++...
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~-~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva~ 81 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFA-RGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVAF 81 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH-TTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEee
Confidence 35666889999999999999999999 9999999999987766655554432211111000 011112334333321
Q ss_pred ccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCC
Q 030973 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPP 149 (168)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~ 149 (168)
-. +.....+..++.+.. ..|=.|.+|||-
T Consensus 82 ---is------p~~~~R~~~R~~~~~---~~f~eVyv~~~~ 110 (156)
T PF01583_consen 82 ---IS------PYREDREWARELIPN---ERFIEVYVDCPL 110 (156)
T ss_dssp ------------SHHHHHHHHHHHHT---TEEEEEEEES-H
T ss_pred ---cc------CchHHHHHHHHhCCc---CceEEEEeCCCH
Confidence 00 112344555666543 358889999985
No 118
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.07 E-value=1.2e-05 Score=58.16 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=35.2
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~ 75 (168)
.++.+.+|+|||+++.+++...++ .|.+|+++.++.....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-~g~~v~~~s~e~~~~~ 41 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTLEESPEE 41 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCCCHHH
Confidence 456889999999999999999999 9999999999875433
No 119
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=98.06 E-value=6.2e-05 Score=53.55 Aligned_cols=41 Identities=17% Similarity=0.196 Sum_probs=36.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+++++|++.| ++||||+.-.+...|.+ +|+||.+|=-....
T Consensus 2 ~~Il~ivG~k-~SGKTTLie~lv~~L~~-~G~rVa~iKH~hh~ 42 (161)
T COG1763 2 MKILGIVGYK-NSGKTTLIEKLVRKLKA-RGYRVATVKHAHHD 42 (161)
T ss_pred CcEEEEEecC-CCChhhHHHHHHHHHHh-CCcEEEEEEecCCC
Confidence 7899997655 78999999999999999 99999999887654
No 120
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=98.03 E-value=3.3e-05 Score=62.89 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=35.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
|++|+|++.| |+||||++.+|...|.. +|+||.+|=.+.
T Consensus 1 MkVi~IvG~s-gSGKTTLiekLI~~L~~-rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGWK-DAGKTGLVERLVAAIAA-RGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEecC-CCCHHHHHHHHHHHHHh-CCCeEEEEeccC
Confidence 5789998875 99999999999999999 999999987754
No 121
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=98.03 E-value=2.3e-05 Score=59.01 Aligned_cols=36 Identities=25% Similarity=0.167 Sum_probs=33.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli 67 (168)
++.+.|++...++|||++++.|+..|.+ +|.+|-++
T Consensus 2 ~~~ifIt~t~t~vGKT~vt~~L~~~l~~-~g~~v~~~ 37 (231)
T PRK12374 2 LKRFFITGTDTSVGKTVVSRALLQALAS-QGKTVAGY 37 (231)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEE
Confidence 4579999999999999999999999999 99999886
No 122
>PHA02542 41 41 helicase; Provisional
Probab=98.03 E-value=3.1e-06 Score=70.02 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=40.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP 77 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~ 77 (168)
...+.++++.+|+||||++.|+|...++ .|++|++++++.....+.
T Consensus 189 ~G~LiiIaarPgmGKTtfalniA~~~a~-~g~~Vl~fSLEM~~~ql~ 234 (473)
T PHA02542 189 RKTLNVLLAGVNVGKSLGLCSLAADYLQ-QGYNVLYISMEMAEEVIA 234 (473)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHHHHh-cCCcEEEEeccCCHHHHH
Confidence 4567788999999999999999999998 999999999998665443
No 123
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=98.01 E-value=1.7e-05 Score=55.21 Aligned_cols=41 Identities=24% Similarity=0.200 Sum_probs=32.5
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEE-EEeCCCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVG-LLDADVYGP 74 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVl-liD~D~~~~ 74 (168)
++|+|++.+ |+||||++..|...|.+ +|+||. +.|.|..++
T Consensus 1 pvv~VvG~~-~sGKTTl~~~Li~~l~~-~g~~v~~ik~~~~g~~ 42 (140)
T PF03205_consen 1 PVVQVVGPK-NSGKTTLIRKLINELKR-RGYRVAVIKHTDHGQF 42 (140)
T ss_dssp -EEEEEEST-TSSHHHHHHHHHHHHHH-TT--EEEEEE-STTST
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHhH-cCCceEEEEEccCCCc
Confidence 478888875 99999999999999999 999999 889988443
No 124
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.01 E-value=2.5e-05 Score=54.60 Aligned_cols=40 Identities=30% Similarity=0.292 Sum_probs=34.8
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~ 75 (168)
.++.+++|+||||++..++..++. .|.+|++++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEE 41 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcchHH
Confidence 355788999999999999999999 9999999999876533
No 125
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.93 E-value=9e-05 Score=61.56 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=31.6
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
|.|++...++|||++++.|++.|.+ .|.+|..+-.
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~-~G~~v~~fKp 35 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILAR-RGYRVAPFKS 35 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHh-CCCeEEEECC
Confidence 4688899999999999999999999 9999997654
No 126
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.92 E-value=6.2e-05 Score=56.64 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=33.9
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
..+.++.+.+|+|||+++.++++..++ .|.+|++++++..
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~ 64 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTENT 64 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCC
Confidence 344444689999999999999999888 8999999999853
No 127
>PRK04296 thymidine kinase; Provisional
Probab=97.91 E-value=0.00026 Score=51.71 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=30.8
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli 67 (168)
.|.++.+..|+||||.+..++..+.. .|++|+++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~-~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEE-RGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH-cCCeEEEE
Confidence 46667788899999999999999999 99999999
No 128
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.91 E-value=3.6e-05 Score=58.19 Aligned_cols=42 Identities=29% Similarity=0.286 Sum_probs=34.4
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHH-----------hCCCeEEEEeCCCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALAS-----------KCQLKVGLLDADVYGP 74 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~-----------~~g~rVlliD~D~~~~ 74 (168)
.++++.+.||+|||+++..+|.+.|. ..+.+|++++++-...
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~ 54 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPRE 54 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHH
Confidence 46788999999999999999998773 1356899999987553
No 129
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.90 E-value=0.0002 Score=50.86 Aligned_cols=35 Identities=34% Similarity=0.551 Sum_probs=29.4
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
.|.|+.+. |.||||.|..+|...+. .|+||++|=+
T Consensus 4 ~i~vy~g~-G~Gkt~~a~g~~~ra~~-~g~~v~~vQF 38 (159)
T cd00561 4 LIQVYTGN-GKGKTTAALGLALRALG-HGYRVGVVQF 38 (159)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHH-CCCeEEEEEE
Confidence 45565555 99999999999999999 9999999544
No 130
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.88 E-value=0.00012 Score=55.08 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=33.9
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+..+.+..|+||||+|.+++..+++ .|.++++|+++...
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi~~e~~~ 64 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVSTQLTT 64 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCCCCH
Confidence 5555788999999999999999988 89999999988644
No 131
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.86 E-value=9.4e-05 Score=49.81 Aligned_cols=40 Identities=33% Similarity=0.292 Sum_probs=32.4
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+.+.+ .+..|+||||++..+|..+.. .++.++.++++...
T Consensus 3 ~~~~l-~G~~G~GKTtl~~~l~~~~~~-~~~~~~~~~~~~~~ 42 (148)
T smart00382 3 EVILI-VGPPGSGKTTLARALARELGP-PGGGVIYIDGEDIL 42 (148)
T ss_pred CEEEE-ECCCCCcHHHHHHHHHhccCC-CCCCEEEECCEEcc
Confidence 34555 456999999999999999988 66689999998755
No 132
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=4.7e-05 Score=61.24 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=35.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
...+..+++.+|+||||+-..++..+|+ ++ |||+|......
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~-~~-~vLYVsGEES~ 132 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAK-RG-KVLYVSGEESL 132 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHh-cC-cEEEEeCCcCH
Confidence 3456666999999999999999999999 77 99999998744
No 133
>PRK08233 hypothetical protein; Provisional
Probab=97.85 E-value=9.2e-05 Score=53.18 Aligned_cols=38 Identities=26% Similarity=0.328 Sum_probs=28.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+.+|++.+ .+|+||||+|..|+..+. +..++..|.+..
T Consensus 3 ~~iI~I~G-~~GsGKtTla~~L~~~l~---~~~~~~~d~~~~ 40 (182)
T PRK08233 3 TKIITIAA-VSGGGKTTLTERLTHKLK---NSKALYFDRYDF 40 (182)
T ss_pred ceEEEEEC-CCCCCHHHHHHHHHhhCC---CCceEEECCEEc
Confidence 45666655 559999999999998874 347888887753
No 134
>PRK07667 uridine kinase; Provisional
Probab=97.78 E-value=6.5e-05 Score=55.04 Aligned_cols=41 Identities=20% Similarity=0.303 Sum_probs=35.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..+|++ ++.+|+||||+|..|+..+.. .|.+|.++++|-..
T Consensus 17 ~~iIgI-~G~~gsGKStla~~L~~~l~~-~~~~~~~i~~Dd~~ 57 (193)
T PRK07667 17 RFILGI-DGLSRSGKTTFVANLKENMKQ-EGIPFHIFHIDDYI 57 (193)
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHHHHHh-CCCcEEEEEcCccc
Confidence 345555 789999999999999999998 99999999999743
No 135
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.77 E-value=0.00026 Score=50.93 Aligned_cols=36 Identities=33% Similarity=0.484 Sum_probs=30.3
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
.|.++.+ .|.||||.|..+|..++. .|+||+++=+=
T Consensus 7 li~v~~g-~GkGKtt~a~g~a~ra~~-~g~~v~ivQFl 42 (173)
T TIGR00708 7 IIIVHTG-NGKGKTTAAFGMALRALG-HGKKVGVIQFI 42 (173)
T ss_pred EEEEECC-CCCChHHHHHHHHHHHHH-CCCeEEEEEEe
Confidence 4555444 899999999999999999 99999998554
No 136
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=97.76 E-value=1.3e-05 Score=50.18 Aligned_cols=27 Identities=56% Similarity=0.959 Sum_probs=21.8
Q ss_pred cEEEEeCCCCCCHHHHHHHhhcccCCC
Q 030973 141 DILVIDMPPGTGDAQLTTTQTLQLSGI 167 (168)
Q Consensus 141 D~IiiD~p~~~~~~~~~~~~~~~~~~~ 167 (168)
||+|||+|||.+|..+.+++.++++|+
T Consensus 2 D~LiiD~PPGTgD~~l~~~~~~~~~g~ 28 (81)
T PF10609_consen 2 DYLIIDLPPGTGDEHLTLMQYLPIDGA 28 (81)
T ss_dssp CEEEEE--SCSSSHHHHHHHHH--SEE
T ss_pred CEEEEeCCCCCCcHHHHHHHhCCCCeE
Confidence 899999999999999999999998875
No 137
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.75 E-value=0.00017 Score=56.92 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=33.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
++++.+ .+.+|+||||+|.+++...++ .|.+|++||+..
T Consensus 55 G~iteI-~G~~GsGKTtLaL~~~~~~~~-~g~~v~yId~E~ 93 (321)
T TIGR02012 55 GRIIEI-YGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEH 93 (321)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCcEEEEcccc
Confidence 345555 557899999999999999999 999999999975
No 138
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.72 E-value=0.00014 Score=60.05 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=35.2
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
..+.++.+.+|+||||++..+|..+++ .|.+|++|+++..
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~-~g~~vlYvs~Ees 119 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAA-AGGKVLYVSGEES 119 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEcccc
Confidence 446666889999999999999999998 8999999999753
No 139
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.70 E-value=0.00018 Score=56.82 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=33.0
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|..+.+.+|+||||+|.+++...++ .|.+|++||+..
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~-~g~~~vyId~E~ 93 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQK-LGGTVAFIDAEH 93 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCCEEEECccc
Confidence 34445668999999999999999999 999999999975
No 140
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.69 E-value=0.00014 Score=58.53 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=35.0
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
..+.++++.+|+||||++..+|..+++ .|.+|++|+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~EEs 121 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGEES 121 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECCcC
Confidence 346666889999999999999999999 8899999998753
No 141
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=97.69 E-value=0.00018 Score=62.37 Aligned_cols=37 Identities=30% Similarity=0.415 Sum_probs=34.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
++.|.+.+...|+|||+++..|++.|.+ +|.||-.+-
T Consensus 2 ~k~l~I~~T~t~~GKT~vslgL~~~L~~-~G~~Vg~fK 38 (684)
T PRK05632 2 SRSIYLAPTGTGVGLTSVSLGLMRALER-KGVKVGFFK 38 (684)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEeC
Confidence 5679999999999999999999999999 999999976
No 142
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.66 E-value=0.00027 Score=53.41 Aligned_cols=41 Identities=15% Similarity=0.004 Sum_probs=35.1
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..+.++.+.+|+|||++|.++++..++ .|.+|++|.++...
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~-~ge~~lyvs~ee~~ 61 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGIYVALEEHP 61 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcEEEEEeeCCH
Confidence 345555889999999999999998888 99999999998744
No 143
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.65 E-value=0.00012 Score=55.06 Aligned_cols=38 Identities=18% Similarity=0.119 Sum_probs=33.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
|++|.|++. .|+||||++.+|+..|.+ .|+||.+|..+
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L~~-~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNLKE-RGYRVATAKHT 38 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHHHh-CCCeEEEEEec
Confidence 578888887 599999999999999999 99999999653
No 144
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.64 E-value=0.00015 Score=59.87 Aligned_cols=40 Identities=30% Similarity=0.420 Sum_probs=35.2
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
..+.++++.+|+||||++..+|..+++ .|.+|++|+++..
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~-~g~kvlYvs~EEs 133 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAK-NQMKVLYVSGEES 133 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEECcCC
Confidence 456667899999999999999999999 8899999999753
No 145
>PRK06696 uridine kinase; Validated
Probab=97.63 E-value=0.00013 Score=54.53 Aligned_cols=43 Identities=21% Similarity=0.116 Sum_probs=35.5
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~ 75 (168)
+.|..+++.+|+||||+|..|+..|.. .|.+|+.+.+|-...+
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~-~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKK-RGRPVIRASIDDFHNP 64 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEeccccccCC
Confidence 445555889999999999999999988 8999999888865533
No 146
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.61 E-value=0.00052 Score=49.46 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=33.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+++++|+ +..|+||||++..|...|.. .|.||-.|-.+..
T Consensus 6 ~~ii~iv-G~sgsGKTTLi~~li~~l~~-~g~~vg~Ik~~~~ 45 (173)
T PRK10751 6 IPLLAIA-AWSGTGKTTLLKKLIPALCA-RGIRPGLIKHTHH 45 (173)
T ss_pred ceEEEEE-CCCCChHHHHHHHHHHHHhh-cCCeEEEEEEcCC
Confidence 5666665 67899999999999999998 8999999976553
No 147
>PRK00784 cobyric acid synthase; Provisional
Probab=97.60 E-value=0.00036 Score=58.22 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=34.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
++.|.|++...|+|||++++.|++.|.+ +|.||..+-
T Consensus 2 ~~~ifItGT~T~vGKT~vt~~L~~~l~~-~G~~v~~~K 38 (488)
T PRK00784 2 AKALMVQGTASDAGKSTLVAGLCRILAR-RGYRVAPFK 38 (488)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHHHHH-CCCeEeccc
Confidence 6779999999999999999999999999 999998663
No 148
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.58 E-value=0.00023 Score=56.00 Aligned_cols=42 Identities=21% Similarity=0.147 Sum_probs=32.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHH-----hCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALAS-----KCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~-----~~g~rVlliD~D~~ 72 (168)
...|.-+.+.+|+|||++|..+|...+. ..+.+|++||+...
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~ 141 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGT 141 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCC
Confidence 4466667889999999999999976542 03679999999864
No 149
>PRK05973 replicative DNA helicase; Provisional
Probab=97.58 E-value=0.00013 Score=55.19 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=36.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
...+.++++.+|+|||+++.++|...++ .|++|+++.++...
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfSlEes~ 104 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFTLEYTE 104 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEEeCCH
Confidence 3456677899999999999999999999 89999999998754
No 150
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.58 E-value=0.00016 Score=60.23 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=37.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
...+.++++.+|+||||++.+++...++ .|.+|+++-++...
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~-~ge~~~y~s~eEs~ 303 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACA-NKERAILFAYEESR 303 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeeCCH
Confidence 4566677899999999999999999999 99999999999854
No 151
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.57 E-value=0.0004 Score=51.75 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=33.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCC------CeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ------LKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g------~rVlliD~D~~ 72 (168)
.+++.+ .+.+|+|||+++.++|...+. .+ .+|++||++..
T Consensus 19 g~v~~I-~G~~GsGKT~l~~~ia~~~~~-~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 19 GRITEI-FGEFGSGKTQLCLQLAVEAQL-PGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred CcEEEE-eCCCCCChhHHHHHHHHHhhc-ccccCCCcceEEEEecCCC
Confidence 445555 679999999999999999887 77 89999999853
No 152
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.57 E-value=0.00021 Score=50.79 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=35.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
|++|+|++. .|+||||++..|...+.. .|++|-+|-.|...
T Consensus 1 m~vi~i~G~-~gsGKTTli~~L~~~l~~-~g~~V~~iK~~~~~ 41 (159)
T cd03116 1 MKVIGFVGY-SGSGKTTLLEKLIPALSA-RGLRVAVIKHDHHD 41 (159)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHH-cCCcEEEEEecCCc
Confidence 467888766 599999999999999998 99999999877644
No 153
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=97.55 E-value=0.00047 Score=51.58 Aligned_cols=36 Identities=28% Similarity=0.261 Sum_probs=33.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli 67 (168)
++.+.|++..-|+|||.+++.|+.++.. +|++|...
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~-~g~~~~~~ 37 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQ-QGYSVAGY 37 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHh-CCCeeEEE
Confidence 6889999999999999999999999999 99998864
No 154
>PF13479 AAA_24: AAA domain
Probab=97.55 E-value=0.00043 Score=51.48 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=25.0
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+-.++.+.+|+||||++..+ .++|+||+|...
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~---------~k~l~id~E~g~ 35 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL---------PKPLFIDTENGS 35 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC---------CCeEEEEeCCCc
Confidence 34455789999999987555 689999999753
No 155
>PF13245 AAA_19: Part of AAA domain
Probab=97.54 E-value=0.0002 Score=44.52 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=30.7
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhC----CCeEEEEeCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKC----QLKVGLLDAD 70 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~----g~rVlliD~D 70 (168)
+.++.+.+|+|||+++.+++..+.. . +++|+++-..
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~-~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLA-ARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH-HhcCCCCeEEEECCC
Confidence 5666889999999999999998886 5 8999999655
No 156
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.54 E-value=0.00015 Score=53.19 Aligned_cols=45 Identities=33% Similarity=0.270 Sum_probs=36.7
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~ 75 (168)
.++.+|.++ +.+|+||||++..|+..+.. .|..++++|.|.....
T Consensus 22 ~~~~~i~i~-G~~GsGKSTla~~l~~~l~~-~~~~~~~ld~d~~~~~ 66 (198)
T PRK03846 22 HKGVVLWFT-GLSGSGKSTVAGALEEALHE-LGVSTYLLDGDNVRHG 66 (198)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHh-CCCCEEEEcCEeHHhh
Confidence 335666664 67899999999999999988 8999999999875533
No 157
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.00052 Score=56.04 Aligned_cols=45 Identities=38% Similarity=0.440 Sum_probs=33.7
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCCCC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGP 74 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~~~ 74 (168)
..+.+|+++ +..|+||||+...||..+.... +.+|.+|-+|....
T Consensus 189 ~~g~vi~lv-GpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri 234 (420)
T PRK14721 189 EQGGVYALI-GPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI 234 (420)
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch
Confidence 346777775 5779999999999998664313 47888898888663
No 158
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.52 E-value=0.0012 Score=48.18 Aligned_cols=37 Identities=30% Similarity=0.350 Sum_probs=30.6
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|.++ ...|-||||.|..+|...+. .|+||++|=+=-
T Consensus 24 ~v~v~-~g~GkGKtt~a~g~a~ra~g-~G~~V~ivQFlK 60 (191)
T PRK05986 24 LLIVH-TGNGKGKSTAAFGMALRAVG-HGKKVGVVQFIK 60 (191)
T ss_pred eEEEE-CCCCCChHHHHHHHHHHHHH-CCCeEEEEEEec
Confidence 44443 56688999999999999999 999999997643
No 159
>PRK04328 hypothetical protein; Provisional
Probab=97.52 E-value=0.00055 Score=52.17 Aligned_cols=40 Identities=15% Similarity=0.017 Sum_probs=33.7
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.+.++.+.+|+|||+++.++++..++ .|.++++|+++...
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~-~ge~~lyis~ee~~ 63 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGVYVALEEHP 63 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEEeeCCH
Confidence 34444678889999999999999888 89999999998744
No 160
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.49 E-value=0.00016 Score=54.91 Aligned_cols=35 Identities=26% Similarity=0.252 Sum_probs=31.9
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
-.++.+++|+|||+++.++|..+.+ .|++|+++++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~-~g~~v~~it~ 135 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLL-RGKSVLIITV 135 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEH
Confidence 4566889999999999999999999 9999999975
No 161
>PRK15453 phosphoribulokinase; Provisional
Probab=97.49 E-value=0.00026 Score=54.71 Aligned_cols=42 Identities=19% Similarity=0.414 Sum_probs=36.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~ 74 (168)
..+|+| .+.+|+||||++..|+..+.. .+.++.+|+.|..+.
T Consensus 5 ~piI~I-tG~SGsGKTTva~~l~~if~~-~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 5 HPIIAV-TGSSGAGTTTVKRAFEKIFRR-ENINAAVVEGDSFHR 46 (290)
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHHhh-cCCCeEEEecccccc
Confidence 566776 678899999999999999988 888999999998774
No 162
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.49 E-value=0.00021 Score=53.59 Aligned_cols=39 Identities=26% Similarity=0.217 Sum_probs=31.3
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhC------CCeEEEEeCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADVY 72 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~------g~rVlliD~D~~ 72 (168)
.+..+.+.+|+|||+++.+++..... . +.+|++||++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~~~-~~~~~g~~~~viyi~~e~~ 64 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTVQL-PIELGGLEGKAVYIDTEGT 64 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHeeC-ccccCCCCccEEEEeCCCC
Confidence 44455788999999999999987654 4 389999999874
No 163
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.48 E-value=0.0002 Score=54.88 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=35.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
...+.++++.+|+|||++|.++|...++ .|.+|++|+++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS-RGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecC
Confidence 3456666899999999999999999999 899999999985
No 164
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.48 E-value=0.00012 Score=51.50 Aligned_cols=39 Identities=33% Similarity=0.247 Sum_probs=33.9
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~ 74 (168)
.++.+.+|+||||+|..|+..+.. .|.+++++|.|....
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~-~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ-RGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEEcCHHHHH
Confidence 345689999999999999999998 899999999987553
No 165
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.44 E-value=0.0002 Score=51.88 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=33.2
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.+++..|+||||+|..|+..+.. .|.++.+|.+|-..
T Consensus 3 ~i~G~sgsGKttla~~l~~~l~~-~~~~~~~i~~Ddf~ 39 (179)
T cd02028 3 GIAGPSGSGKTTFAKKLSNQLRV-NGIGPVVISLDDYY 39 (179)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH-cCCCEEEEehhhcc
Confidence 34789999999999999999998 89999999999765
No 166
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=97.43 E-value=0.001 Score=56.87 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=36.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+++|+|++. .|+||||+...|...|.+ +|+||.+|-.+.+.
T Consensus 10 ~~vi~ivG~-s~sGKTTlie~li~~L~~-~G~rVavIKh~~h~ 50 (597)
T PRK14491 10 IPLLGFCAY-SGTGKTTLLEQLIPELNQ-RGLRLAVIKHAHHN 50 (597)
T ss_pred ccEEEEEcC-CCCCHHHHHHHHHHHHHh-CCceEEEEEcCCcC
Confidence 788899764 799999999999999999 99999999986543
No 167
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.42 E-value=0.00056 Score=51.08 Aligned_cols=39 Identities=23% Similarity=0.176 Sum_probs=31.5
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYG 73 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~~ 73 (168)
+.++.+.+|+|||+++.++++..++ . |.+|++|.++...
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~-~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLK-NFGEKVLYVSFEEPP 60 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH-HHT--EEEEESSS-H
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhh-hcCCcEEEEEecCCH
Confidence 4444788999999999999999999 8 9999999998754
No 168
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.41 E-value=0.0002 Score=54.47 Aligned_cols=37 Identities=35% Similarity=0.461 Sum_probs=33.2
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.++.|.+|+||||+|..|+..+.. .|.+|.+++.|.-
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~-~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE-KNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-cCCceEEEccHHH
Confidence 466889999999999999999998 8999999998864
No 169
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.39 E-value=0.00022 Score=56.65 Aligned_cols=40 Identities=28% Similarity=0.272 Sum_probs=35.2
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
++++.+-+|+||||++..|+..|....|.+|.++|.|-.-
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 4678899999999999999999983389999999999854
No 170
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.39 E-value=0.0026 Score=45.05 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=27.9
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+.+.++.-|+||||+...+... . .|.++.++-.+...
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~--~-~~~~~~~i~~~~G~ 38 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE--Q-HGRKIAVIENEFGE 38 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc--c-cCCcEEEEecCCCc
Confidence 4456778899999999988765 3 57888887776533
No 171
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.36 E-value=0.0008 Score=51.46 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=38.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCccc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPM 78 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~ 78 (168)
.+++++ .+.+|+|||+++.++++..++ .|.+|++|.++.....+..
T Consensus 23 g~~~lI-~G~pGsGKT~f~~qfl~~~~~-~ge~vlyvs~~e~~~~l~~ 68 (260)
T COG0467 23 GSVVLI-TGPPGTGKTIFALQFLYEGAR-EGEPVLYVSTEESPEELLE 68 (260)
T ss_pred CcEEEE-EcCCCCcHHHHHHHHHHHHHh-cCCcEEEEEecCCHHHHHH
Confidence 445554 789999999999999999999 9999999999986644443
No 172
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=97.36 E-value=0.001 Score=45.90 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=30.3
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
|..++| +|||+++..|+..|.+ +|.+|..+....+
T Consensus 4 ~~~~~~-~Gkt~~~~~l~~~l~~-~~~~v~~~kp~~~ 38 (134)
T cd03109 4 FGTGTD-IGKTVATAILARALKE-KGYRVAPLKPVQT 38 (134)
T ss_pred EeCCCC-cCHHHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 344555 9999999999999999 9999999988765
No 173
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.35 E-value=0.0028 Score=45.04 Aligned_cols=38 Identities=32% Similarity=0.385 Sum_probs=30.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
+..|.+ ++.+|+||||++..+|-.|.+ .|++|--+=+-
T Consensus 5 ~mki~I-TG~PGvGKtTl~~ki~e~L~~-~g~kvgGf~t~ 42 (179)
T COG1618 5 AMKIFI-TGRPGVGKTTLVLKIAEKLRE-KGYKVGGFITP 42 (179)
T ss_pred ceEEEE-eCCCCccHHHHHHHHHHHHHh-cCceeeeEEee
Confidence 334555 789999999999999999999 99998765443
No 174
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=97.34 E-value=0.00086 Score=52.64 Aligned_cols=49 Identities=27% Similarity=0.383 Sum_probs=37.2
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHH---hCC------CeEEEEeCCCCCCCccccc
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALAS---KCQ------LKVGLLDADVYGPSVPMMM 80 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~---~~g------~rVlliD~D~~~~~l~~~~ 80 (168)
-+..++.+.||+||||++..|..+++. ..| .+|++|.+....+++-..|
T Consensus 89 g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl 146 (402)
T COG3598 89 GYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERL 146 (402)
T ss_pred CeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHH
Confidence 355666799999999999999988885 123 4799999988776654443
No 175
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.34 E-value=0.00037 Score=53.44 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=35.0
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVY 72 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~ 72 (168)
..+.++.+.+|+||||++.++|..++. . |.+|+++.++..
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~-~~g~~vl~iS~E~~ 70 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLIT-QHGVRVGTISLEEP 70 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH-hcCceEEEEEcccC
Confidence 346667899999999999999999988 6 999999999864
No 176
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=97.34 E-value=0.0024 Score=50.69 Aligned_cols=46 Identities=22% Similarity=0.088 Sum_probs=38.6
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV 76 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l 76 (168)
..++++.++++ --+||||++.-|-.+..+ .|+|.+.+|+|+.++++
T Consensus 101 ~~GPrv~vVGp-~d~GKsTl~r~L~nyavk-~gr~Plfv~LDvgQ~si 146 (415)
T KOG2749|consen 101 SYGPRVMVVGP-TDVGKSTLCRILLNYAVK-QGRRPLFVELDVGQGSI 146 (415)
T ss_pred ccCCEEEEECC-CccchHHHHHHHHHHHHH-cCCcceEEEcCCCCCce
Confidence 34666777554 468999999999999999 89999999999999764
No 177
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.33 E-value=0.00039 Score=52.36 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=35.4
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYG 73 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~~ 73 (168)
.+.++++.+|+|||+++.+++..++. . |.+|+++.++...
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~-~~g~~vly~s~E~~~ 54 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAK-KQGKPVLFFSLEMSK 54 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCceEEEeCCCCH
Confidence 46666899999999999999999999 6 9999999998844
No 178
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.32 E-value=0.0014 Score=54.12 Aligned_cols=35 Identities=29% Similarity=0.473 Sum_probs=32.5
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
|.|++...|+|||++++.|++.|.+ +|.||..+-.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~-~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSR-RKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH-CCCceeEEcc
Confidence 6788999999999999999999999 9999998864
No 179
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.31 E-value=0.00086 Score=53.45 Aligned_cols=42 Identities=26% Similarity=0.193 Sum_probs=33.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHH---h--CCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALAS---K--CQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~---~--~g~rVlliD~D~~ 72 (168)
...|.-+.+.+|+|||++|.++|...+. . .+.+|++||+.-.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~t 171 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGT 171 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCC
Confidence 5667777899999999999999976652 0 2369999999863
No 180
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.30 E-value=0.001 Score=49.72 Aligned_cols=32 Identities=31% Similarity=0.319 Sum_probs=25.1
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
...++.+++|+||||+|.+|+ .++++++.|..
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~--------~~~~~~~~d~~ 44 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP--------GKTLVLSFDMS 44 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC--------CCCEEEecccc
Confidence 446667899999999877652 46899999974
No 181
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.30 E-value=0.0016 Score=50.39 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=34.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
...|.=+-+-.|+||||+|.+++..... .|.+|++||+...
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~-~g~~a~fIDtE~~ 99 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQK-PGGKAAFIDTEHA 99 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhc-CCCeEEEEeCCCC
Confidence 4455555678899999999999999999 9999999999863
No 182
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.23 E-value=0.00059 Score=52.43 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=34.9
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~ 74 (168)
|+| ++.+|+||||++..++..|.+ .|.+|.+|+.|..+.
T Consensus 2 IgI-tG~SGSGKTTv~~~l~~~l~~-~g~~v~vI~~D~yyr 40 (277)
T cd02029 2 IAV-TGSSGAGTTTVKRAFEHIFAR-EGIHPAVVEGDSFHR 40 (277)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHh-cCCceEEEecccccc
Confidence 555 678899999999999999998 899999999998775
No 183
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.22 E-value=0.00051 Score=45.97 Aligned_cols=31 Identities=42% Similarity=0.440 Sum_probs=23.4
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
.++++.+|+||||+|..||..+ |..++-+|-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~----~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL----GFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH----TCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH----CCeEEEecc
Confidence 4557899999999999998866 555554443
No 184
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.22 E-value=0.00052 Score=49.79 Aligned_cols=41 Identities=29% Similarity=0.333 Sum_probs=31.2
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHh---------CCCeEEEEeCCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASK---------CQLKVGLLDADVYG 73 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~---------~g~rVlliD~D~~~ 73 (168)
-+.++.+.+|+||||++.++|.+++.- .+.+||+|+++...
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 367778899999999999999999861 35799999999864
No 185
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.20 E-value=0.0053 Score=45.32 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=33.1
Q ss_pred CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+++.++|+|+ +-.|+||||+..++...+.. +++|.++..|+.
T Consensus 19 ~~~~~~i~~~-G~~gsGKTTli~~l~~~~~~--~~~v~v~~~~~~ 60 (207)
T TIGR00073 19 KHGLVVLNFM-SSPGSGKTTLIEKLIDNLKD--EVKIAVIEGDVI 60 (207)
T ss_pred hcCcEEEEEE-CCCCCCHHHHHHHHHHHHhc--CCeEEEEECCCC
Confidence 4456777774 56689999999999988754 679999998874
No 186
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.17 E-value=0.00079 Score=48.33 Aligned_cols=38 Identities=32% Similarity=0.269 Sum_probs=32.6
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+.++.+-.|+||||++..|+..+.. .+..++++|.|.-
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~~l~~-~~~~~~~~~~d~~ 46 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLKL-KYSNVIYLDGDEL 46 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH-cCCcEEEEecHHH
Confidence 4455788999999999999999998 8889999988753
No 187
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.14 E-value=0.0016 Score=51.86 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=32.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHH--h---CCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALAS--K---CQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~--~---~g~rVlliD~D~~ 72 (168)
...|..+.+.+|+|||++|..+|...+. . .+.+|++||++-.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~ 168 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGT 168 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCC
Confidence 4566667889999999999999976542 0 1348999999874
No 188
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.13 E-value=0.0013 Score=48.51 Aligned_cols=39 Identities=26% Similarity=0.414 Sum_probs=31.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..+|++ ++.+|+||||++..|+..+ .+.++.+++.|...
T Consensus 6 ~~iI~I-~G~sGsGKTTl~~~l~~~l---~~~~~~~i~~D~~~ 44 (209)
T PRK05480 6 PIIIGI-AGGSGSGKTTVASTIYEEL---GDESIAVIPQDSYY 44 (209)
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHHHh---CCCceEEEeCCccc
Confidence 555665 7799999999999999987 45689999998754
No 189
>PRK06762 hypothetical protein; Provisional
Probab=97.12 E-value=0.00069 Score=48.10 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=29.3
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+.+.++.+..|+||||+|..|+..+ +..+.+++.|...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l----~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL----GRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCCeEEecHHHHH
Confidence 3455668999999999999999877 3358888877644
No 190
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.00089 Score=51.24 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=32.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
..-+.+ .+++|+|||.+|+++|..+.+ .|.+|+++..-
T Consensus 105 ~~nl~l-~G~~G~GKThLa~Ai~~~l~~-~g~sv~f~~~~ 142 (254)
T COG1484 105 GENLVL-LGPPGVGKTHLAIAIGNELLK-AGISVLFITAP 142 (254)
T ss_pred CCcEEE-ECCCCCcHHHHHHHHHHHHHH-cCCeEEEEEHH
Confidence 445555 688999999999999999998 99999999774
No 191
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.10 E-value=0.0013 Score=47.65 Aligned_cols=40 Identities=38% Similarity=0.380 Sum_probs=34.1
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.+.++.+.+|+||||++..|+..+.. .|..++++|.|...
T Consensus 19 ~~i~i~G~~GsGKstla~~l~~~l~~-~~~~~~~l~~d~~r 58 (184)
T TIGR00455 19 VVIWLTGLSGSGKSTIANALEKKLES-KGYRVYVLDGDNVR 58 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECChHHH
Confidence 45555788899999999999999987 88889999998755
No 192
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.09 E-value=0.0021 Score=56.26 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=35.3
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..|..+.+..|+||||++..++...++ .|.+|++||+...-
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~-~G~~v~yId~E~t~ 100 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQA-AGGVAAFIDAEHAL 100 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccch
Confidence 456666789999999999999998888 99999999998644
No 193
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=97.09 E-value=0.001 Score=50.80 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=35.2
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYG 73 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~~ 73 (168)
.-+.++++.+|+|||+++.++|..++. . |.+|+++.++...
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~-~~~~~vly~SlEm~~ 60 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAAL-NGGYPVLYFSLEMSE 60 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHH-TTSSEEEEEESSS-H
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHH-hcCCeEEEEcCCCCH
Confidence 346777899999999999999999999 6 6999999999744
No 194
>PHA00729 NTP-binding motif containing protein
Probab=97.09 E-value=0.00069 Score=50.79 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=29.1
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHH-------------HhCCCeEEEEeCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALA-------------SKCQLKVGLLDADV 71 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la-------------~~~g~rVlliD~D~ 71 (168)
..|. +.+.+|+||||+|..||..+. . .+++++.+|.+.
T Consensus 18 ~nIl-ItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d-~~~~~~fid~~~ 68 (226)
T PHA00729 18 VSAV-IFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQ-YVQNSYFFELPD 68 (226)
T ss_pred EEEE-EECCCCCCHHHHHHHHHHHHHhhcccccchhhHHh-cCCcEEEEEHHH
Confidence 3444 456889999999999999875 3 567788888764
No 195
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=97.07 E-value=0.0052 Score=44.39 Aligned_cols=37 Identities=14% Similarity=0.032 Sum_probs=29.8
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|-|+. ..|=||||.|..+|...+- .|+||++|=+=-
T Consensus 23 li~VYt-GdGKGKTTAAlGlalRAaG-~G~rV~iiQFlK 59 (178)
T PRK07414 23 LVQVFT-SSQRNFFTSVMAQALRIAG-QGTPVLIVQFLK 59 (178)
T ss_pred EEEEEe-CCCCCchHHHHHHHHHHhc-CCCEEEEEEEec
Confidence 344433 4577999999999999999 999999997643
No 196
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.01 E-value=0.0017 Score=48.41 Aligned_cols=41 Identities=22% Similarity=0.185 Sum_probs=34.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+.++.+ .+.+|+|||+++.+++...++ .|++|++++++...
T Consensus 16 g~~~li-~G~~G~GKt~~~~~~~~~~~~-~g~~~~y~s~e~~~ 56 (224)
T TIGR03880 16 GHVIVV-IGEYGTGKTTFSLQFLYQGLK-NGEKAMYISLEERE 56 (224)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCCCH
Confidence 455555 567999999999999999888 89999999998743
No 197
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.01 E-value=0.00092 Score=48.40 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=29.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
.+-+.+++ ..|+|||.+|..+|..+.+ .|++|+.+++.
T Consensus 47 ~~~l~l~G-~~G~GKThLa~ai~~~~~~-~g~~v~f~~~~ 84 (178)
T PF01695_consen 47 GENLILYG-PPGTGKTHLAVAIANEAIR-KGYSVLFITAS 84 (178)
T ss_dssp --EEEEEE-STTSSHHHHHHHHHHHHHH-TT--EEEEEHH
T ss_pred CeEEEEEh-hHhHHHHHHHHHHHHHhcc-CCcceeEeecC
Confidence 45566655 6899999999999999999 99999999875
No 198
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.99 E-value=0.0029 Score=53.06 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=35.0
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGPS 75 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~~~~ 75 (168)
.+.++.+.+|+|||+++.+++...++ . |.+|++|.++.....
T Consensus 32 s~~li~G~pGsGKT~l~~qf~~~~~~-~~ge~~lyis~ee~~~~ 74 (509)
T PRK09302 32 RPTLVSGTAGTGKTLFALQFLVNGIK-RFDEPGVFVTFEESPED 74 (509)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH-hcCCCEEEEEccCCHHH
Confidence 44455789999999999999998888 6 999999999985533
No 199
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.98 E-value=0.0013 Score=53.84 Aligned_cols=43 Identities=23% Similarity=0.279 Sum_probs=36.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..-+.++++.+|+|||+++.++|..++...|++|+++.++...
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~ 235 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSA 235 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH
Confidence 3446677999999999999999999983279999999998744
No 200
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.97 E-value=0.002 Score=48.15 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=33.5
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.+.++.+.+|+|||+++.+++...++ .|.+|++++++...
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~~~~~~-~g~~~~~is~e~~~ 60 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFAYKGLR-DGDPVIYVTTEESR 60 (229)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHh-cCCeEEEEEccCCH
Confidence 34444679999999999999998888 89999999997643
No 201
>PRK06526 transposase; Provisional
Probab=96.92 E-value=0.00064 Score=52.02 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=30.8
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
+-+ ++.+.+|+|||++|.++|..+.+ .|++|+++.+.
T Consensus 99 ~nl-ll~Gp~GtGKThLa~al~~~a~~-~g~~v~f~t~~ 135 (254)
T PRK06526 99 ENV-VFLGPPGTGKTHLAIGLGIRACQ-AGHRVLFATAA 135 (254)
T ss_pred ceE-EEEeCCCCchHHHHHHHHHHHHH-CCCchhhhhHH
Confidence 344 44668899999999999999999 99999987554
No 202
>PRK05439 pantothenate kinase; Provisional
Probab=96.92 E-value=0.0023 Score=50.36 Aligned_cols=42 Identities=36% Similarity=0.340 Sum_probs=33.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHh-CCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~-~g~rVlliD~D~~~ 73 (168)
+-+|+| ++.+|+||||+|..|+..+.+. .+.+|.+|.+|-..
T Consensus 86 ~~iIgI-aG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 86 PFIIGI-AGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 445555 7889999999999999988762 26799999999755
No 203
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.91 E-value=0.001 Score=49.17 Aligned_cols=39 Identities=31% Similarity=0.330 Sum_probs=33.8
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+.++++-+|+||||+|-+||..|.+ .+.+|..+..|...
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~-~i~~vi~l~kdy~~ 41 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ-EIWRVIHLEKDYLR 41 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH-hhhhccccchhhhh
Confidence 3455789999999999999999999 99999998887644
No 204
>PRK09354 recA recombinase A; Provisional
Probab=96.90 E-value=0.0021 Score=51.32 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=33.8
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
..|..+.+..|+||||+|.+++...++ .|.+|++||+...
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~-~G~~~~yId~E~s 99 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHA 99 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccc
Confidence 344444568999999999999999999 9999999999863
No 205
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.90 E-value=0.0051 Score=48.58 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=33.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
++++-++++ .++||||++..+...+.+ .|..++.||.+..
T Consensus 53 G~ivEi~G~-~ssGKttLaL~~ia~~q~-~g~~~a~ID~e~~ 92 (322)
T PF00154_consen 53 GRIVEIYGP-ESSGKTTLALHAIAEAQK-QGGICAFIDAEHA 92 (322)
T ss_dssp TSEEEEEES-TTSSHHHHHHHHHHHHHH-TT-EEEEEESSS-
T ss_pred CceEEEeCC-CCCchhhhHHHHHHhhhc-ccceeEEecCccc
Confidence 778888876 688999999999999888 8999999999753
No 206
>PTZ00035 Rad51 protein; Provisional
Probab=96.88 E-value=0.0032 Score=50.14 Aligned_cols=41 Identities=22% Similarity=0.129 Sum_probs=31.0
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHh-----CCCeEEEEeCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVY 72 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~-----~g~rVlliD~D~~ 72 (168)
..|..+.+..|+|||+++..++.....- .+.+|++||+...
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~ 163 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT 163 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC
Confidence 4555557799999999999998765410 3569999999754
No 207
>PRK12377 putative replication protein; Provisional
Probab=96.86 E-value=0.0018 Score=49.35 Aligned_cols=35 Identities=29% Similarity=0.264 Sum_probs=30.8
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
.++++..|+|||.++..+|..+.+ .|++|+++...
T Consensus 104 l~l~G~~GtGKThLa~AIa~~l~~-~g~~v~~i~~~ 138 (248)
T PRK12377 104 FVFSGKPGTGKNHLAAAIGNRLLA-KGRSVIVVTVP 138 (248)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-cCCCeEEEEHH
Confidence 344678899999999999999999 99999999874
No 208
>PRK05595 replicative DNA helicase; Provisional
Probab=96.84 E-value=0.002 Score=53.14 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=36.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..-+.++++.+|+|||+++.++|..+|...|++|+++.++...
T Consensus 200 ~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~ 242 (444)
T PRK05595 200 KGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSK 242 (444)
T ss_pred CCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCH
Confidence 4457777999999999999999998774279999999998743
No 209
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.82 E-value=0.0087 Score=44.48 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=65.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (168)
...+.++=+.-|+|||.++..+++-+-. .|++|.+|-+... ...++.-...-+.. .....-...+.++|....
T Consensus 27 ~GsL~lIEGd~~tGKSvLsqr~~YG~L~-~g~~v~yvsTe~T---~refi~qm~sl~yd---v~~~~l~G~l~~~~~~~~ 99 (235)
T COG2874 27 VGSLILIEGDNGTGKSVLSQRFAYGFLM-NGYRVTYVSTELT---VREFIKQMESLSYD---VSDFLLSGRLLFFPVNLE 99 (235)
T ss_pred cCeEEEEECCCCccHHHHHHHHHHHHHh-CCceEEEEEechh---HHHHHHHHHhcCCC---chHHHhcceeEEEEeccc
Confidence 4567777888999999999999999999 9999999998652 12222111111110 001111233444543211
Q ss_pred CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCC
Q 030973 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPG 150 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~ 150 (168)
...+........++.+++..+..++|+||||+=..
T Consensus 100 -----~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~ 134 (235)
T COG2874 100 -----PVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSA 134 (235)
T ss_pred -----ccccChHHHHHHHHHHHhhHHhhcCCEEEEecccH
Confidence 12222233455667777776657899999998664
No 210
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=96.81 E-value=0.003 Score=46.23 Aligned_cols=35 Identities=34% Similarity=0.507 Sum_probs=31.8
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli 67 (168)
|.|.|++...++|||+++..|+..|.+ +|.||-++
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~-~g~~v~~~ 35 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRR-RGIKVGYF 35 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHh-CCCceEEE
Confidence 578999999999999999999999999 99999854
No 211
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.80 E-value=0.0093 Score=47.10 Aligned_cols=41 Identities=22% Similarity=0.105 Sum_probs=30.6
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHH--hCC---CeEEEEeCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALAS--KCQ---LKVGLLDADVY 72 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~--~~g---~rVlliD~D~~ 72 (168)
..|..+.+.+|+|||+++..++...+. ..| .+|++||+...
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~ 141 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT 141 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC
Confidence 455556789999999999999874432 122 58999999864
No 212
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.77 E-value=0.007 Score=47.11 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=33.3
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.+..+|.++ +..|+||||+...+...+.. .+++.+|+.|...
T Consensus 102 ~~~~~v~l~-G~pGsGKTTLl~~l~~~l~~--~~~~~VI~gD~~t 143 (290)
T PRK10463 102 RKQLVLNLV-SSPGSGKTTLLTETLMRLKD--SVPCAVIEGDQQT 143 (290)
T ss_pred cCCeEEEEE-CCCCCCHHHHHHHHHHHhcc--CCCEEEECCCcCc
Confidence 346666665 56899999999999999866 3689999998744
No 213
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.75 E-value=0.00067 Score=51.94 Aligned_cols=49 Identities=24% Similarity=0.230 Sum_probs=34.5
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHh-----CCCeEEEEeCCCCCCCcccccc
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVYGPSVPMMMK 81 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~-----~g~rVlliD~D~~~~~l~~~~~ 81 (168)
..|.=+.+.+|+|||.+|..||.....- .+.+|++||++-.. +...+..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f-~~~Rl~~ 91 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTF-SPERLQQ 91 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS--HHHHHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCC-CHHHHHH
Confidence 3455557789999999999999765420 36799999999754 3344433
No 214
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.75 E-value=0.0021 Score=49.59 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=28.0
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.+++|-+|+||||+|..|+..+.+ .+++|.+|+-|.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~-~~~~v~~i~~~~ 39 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEE-KGKEVVIISDDS 39 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHH-TT--EEEE-THH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh-cCCEEEEEcccc
Confidence 3456889999999999999999999 999999999554
No 215
>PRK08506 replicative DNA helicase; Provisional
Probab=96.75 E-value=0.0029 Score=52.64 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=37.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..-+.++++.+|+|||+++.++|..++. .|++|+++.++...
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~-~g~~V~~fSlEMs~ 232 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALN-QDKGVAFFSLEMPA 232 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHh-cCCcEEEEeCcCCH
Confidence 4457777999999999999999999998 89999999999754
No 216
>PRK09183 transposase/IS protein; Provisional
Probab=96.71 E-value=0.0027 Score=48.73 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=30.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
...+.+ .+..|+|||+++..+|..+.. .|++|+++++
T Consensus 102 ~~~v~l-~Gp~GtGKThLa~al~~~a~~-~G~~v~~~~~ 138 (259)
T PRK09183 102 NENIVL-LGPSGVGKTHLAIALGYEAVR-AGIKVRFTTA 138 (259)
T ss_pred CCeEEE-EeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeH
Confidence 344555 567899999999999999888 9999999875
No 217
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.70 E-value=0.002 Score=47.11 Aligned_cols=37 Identities=32% Similarity=0.404 Sum_probs=29.7
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCe----EEEEeCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLK----VGLLDADV 71 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~r----VlliD~D~ 71 (168)
+|++ ++.+|+||||+|..|+..|.+ .|.. +.++..|-
T Consensus 1 IIgI-~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~ 41 (194)
T PF00485_consen 1 IIGI-AGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDD 41 (194)
T ss_dssp EEEE-EESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGG
T ss_pred CEEE-ECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecc
Confidence 3455 778899999999999999998 7766 66666664
No 218
>PRK05642 DNA replication initiation factor; Validated
Probab=96.70 E-value=0.0022 Score=48.36 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=32.5
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
-.+..+..|+|||.++..++..+.+ .|++|++++++.
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~-~~~~v~y~~~~~ 83 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQ-RGEPAVYLPLAE 83 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEeeHHH
Confidence 3466788999999999999999988 899999999865
No 219
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=96.70 E-value=0.0035 Score=51.48 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=36.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..-+.++++.+|+|||+++.++|..++...|++|+++.++...
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~ 236 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSA 236 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCH
Confidence 3456777999999999999999999886369999999999754
No 220
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.70 E-value=0.0035 Score=38.00 Aligned_cols=31 Identities=42% Similarity=0.454 Sum_probs=25.7
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
++.+..|+||||++..|+..+ .+.++.++|.
T Consensus 3 ~i~G~~gsGKst~~~~l~~~l---~~~~~~~i~~ 33 (69)
T cd02019 3 AITGGSGSGKSTVAKKLAEQL---GGRSVVVLDE 33 (69)
T ss_pred EEECCCCCCHHHHHHHHHHHh---cCCCEEEEeE
Confidence 346889999999999999988 3677887766
No 221
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=96.68 E-value=0.016 Score=40.45 Aligned_cols=108 Identities=13% Similarity=0.055 Sum_probs=50.6
Q ss_pred EEEEecCCCCCChhh-HHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc---cCceeecccCCeeeeecC
Q 030973 33 VIAVASGKGGVGKST-TAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK---DMKMVPIENYGVKCMSMG 108 (168)
Q Consensus 33 vI~v~s~kgG~GKTt-~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~ 108 (168)
.+.+.--.+|.|||+ +--.+.....+ ++.|||++. |.+.-...+-..-....+.- ...-.......++++..+
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~-~~~rvLvL~--PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~a 81 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIK-RRLRVLVLA--PTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHA 81 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHH-TT--EEEEE--SSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHH
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHH-ccCeEEEec--ccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccH
Confidence 456667789999998 56777777777 799999985 32222221111111100000 000011112222333211
Q ss_pred ccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ 160 (168)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~ 160 (168)
.....+.+..+..+||+||+|=....+...+++-.
T Consensus 82 -----------------t~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg 116 (148)
T PF07652_consen 82 -----------------TYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARG 116 (148)
T ss_dssp -----------------HHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHH
T ss_pred -----------------HHHHHhcCcccccCccEEEEeccccCCHHHHhhhe
Confidence 22233444444478999999988888777776543
No 222
>PRK08760 replicative DNA helicase; Provisional
Probab=96.67 E-value=0.003 Score=52.63 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=36.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..-+.++++.+|+|||+++.++|...+...|++|+++.++...
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~ 270 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA 270 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH
Confidence 3457777999999999999999999885259999999998754
No 223
>PRK06749 replicative DNA helicase; Provisional
Probab=96.65 E-value=0.0029 Score=51.99 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=37.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..-+.++++.+|.|||+++.++|...++ .|++|+++.++...
T Consensus 185 ~G~LiiIaarPgmGKTafal~ia~~~a~-~g~~v~~fSlEMs~ 226 (428)
T PRK06749 185 EGDFVVLGARPSMGKTAFALNVGLHAAK-SGAAVGLFSLEMSS 226 (428)
T ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHHh-cCCCEEEEEeeCCH
Confidence 4457777999999999999999999998 89999999988754
No 224
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.64 E-value=0.0033 Score=46.93 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=32.6
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..++.+..|+|||+++..++..+.+ .|.++..+++..
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~-~~~~~~~i~~~~ 80 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASY-GGRNARYLDAAS 80 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEehHH
Confidence 4456788999999999999999988 899999999975
No 225
>PRK06893 DNA replication initiation factor; Validated
Probab=96.64 E-value=0.003 Score=47.47 Aligned_cols=37 Identities=14% Similarity=-0.041 Sum_probs=32.6
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..+..+..|+|||+++..+|..+.+ .+.+|.++.++.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~y~~~~~ 77 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLL-NQRTAIYIPLSK 77 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH-cCCCeEEeeHHH
Confidence 4556788999999999999999999 899999999863
No 226
>PRK08727 hypothetical protein; Validated
Probab=96.64 E-value=0.0028 Score=47.78 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=32.8
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.++.+..|+|||.++..++..+.+ .|++|.++.++...
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~-~~~~~~y~~~~~~~ 81 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQ-AGRSSAYLPLQAAA 81 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEeHHHhh
Confidence 556778999999999999999998 89999999876533
No 227
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.61 E-value=0.0041 Score=42.07 Aligned_cols=39 Identities=26% Similarity=0.125 Sum_probs=33.2
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..++.+.+|+|||+++..++..+.. .+.+++.+++....
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~~~~~ 59 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELFR-PGAPFLYLNASDLL 59 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhc-CCCCeEEEehhhhh
Confidence 4445788999999999999999988 89999999987654
No 228
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.60 E-value=0.0024 Score=47.19 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=27.8
Q ss_pred EEEecCCCCCChhhHHHHHHHHH--------HHhCCCeEEEEeCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVAL--------ASKCQLKVGLLDAD 70 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~l--------a~~~g~rVlliD~D 70 (168)
+.++.+.+|+|||++.+.+...+ .. .+++||++--.
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~-~~~~il~~~~s 62 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSAD-RGKKILVVSPS 62 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCC-CSS-EEEEESS
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhh-ccccceeecCC
Confidence 78889999999999999999888 45 78888888653
No 229
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=96.59 E-value=0.0046 Score=48.68 Aligned_cols=41 Identities=34% Similarity=0.425 Sum_probs=36.3
Q ss_pred CCeEEEEecCC-CCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGK-GGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~k-gG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..+||+|=|-. ||+|||.++..||..|.+ +|++|.+|.=.-
T Consensus 27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~-~G~~~~IlSRGY 68 (311)
T TIGR00682 27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKD-RGLRVGVLSRGY 68 (311)
T ss_pred CCCEEEEeccccCCcChHHHHHHHHHHHHH-CCCEEEEECCCC
Confidence 37899998877 999999999999999999 999999997543
No 230
>COG2403 Predicted GTPase [General function prediction only]
Probab=96.57 E-value=0.0042 Score=49.65 Aligned_cols=40 Identities=33% Similarity=0.334 Sum_probs=37.4
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
...++|+++...-|+|||+++..+|+.|.+ +|+||++|-.
T Consensus 124 ~ekPviaV~atrtg~GKsaVS~~v~r~l~e-rgyrv~vVrh 163 (449)
T COG2403 124 LEKPVIAVTATRTGVGKSAVSRYVARLLRE-RGYRVCVVRH 163 (449)
T ss_pred hcCceEEEEEeccccchhHHHHHHHHHHHH-cCCceEEEec
Confidence 347899999999999999999999999999 9999999977
No 231
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.57 E-value=0.0031 Score=50.02 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=32.3
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+-+.+ .+..|+|||.++..+|..+.. .|++|+.+.++-
T Consensus 184 ~~Lll-~G~~GtGKThLa~aIa~~l~~-~g~~V~y~t~~~ 221 (329)
T PRK06835 184 ENLLF-YGNTGTGKTFLSNCIAKELLD-RGKSVIYRTADE 221 (329)
T ss_pred CcEEE-ECCCCCcHHHHHHHHHHHHHH-CCCeEEEEEHHH
Confidence 44555 567899999999999999999 999999998854
No 232
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=96.56 E-value=0.023 Score=41.36 Aligned_cols=35 Identities=34% Similarity=0.506 Sum_probs=28.5
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
.|.|+. ..|=||||.|..+|....- .|.||++|-+
T Consensus 30 li~V~T-G~GKGKTTAAlG~alRa~G-hG~rv~vvQF 64 (198)
T COG2109 30 LIIVFT-GNGKGKTTAALGLALRALG-HGLRVGVVQF 64 (198)
T ss_pred eEEEEe-cCCCChhHHHHHHHHHHhc-CCCEEEEEEE
Confidence 344433 4577999999999999999 9999999865
No 233
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.56 E-value=0.0033 Score=46.74 Aligned_cols=40 Identities=18% Similarity=0.100 Sum_probs=32.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.+.|.+ .+..|+|||+++..++..+.+ .+.+++.++++..
T Consensus 38 ~~~lll-~G~~G~GKT~la~~~~~~~~~-~~~~~~~i~~~~~ 77 (226)
T TIGR03420 38 DRFLYL-WGESGSGKSHLLQAACAAAEE-RGKSAIYLPLAEL 77 (226)
T ss_pred CCeEEE-ECCCCCCHHHHHHHHHHHHHh-cCCcEEEEeHHHH
Confidence 444555 568899999999999999988 8899999998654
No 234
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=96.55 E-value=0.0042 Score=49.20 Aligned_cols=40 Identities=33% Similarity=0.432 Sum_probs=34.4
Q ss_pred CeEEEEecC-CCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASG-KGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~-kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.++|+|=|- .||+|||+++..|+..|.+ +|+||.+|-=..
T Consensus 49 ~pvIsVGNi~vGGtGKTP~v~~L~~~l~~-~g~~~~ilsRGY 89 (325)
T PRK00652 49 VPVIVVGNITVGGTGKTPVVIALAEQLQA-RGLKPGVVSRGY 89 (325)
T ss_pred CCEEEEcCeeCCCCChHHHHHHHHHHHHH-CCCeEEEECCCC
Confidence 668888554 6999999999999999999 999999997554
No 235
>PRK08006 replicative DNA helicase; Provisional
Probab=96.55 E-value=0.0047 Score=51.37 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=36.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..-+.++.+.+|.|||+++.|+|..+|...|++|+++.++...
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~ 265 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPG 265 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 4567777999999999999999999985269999999998754
No 236
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.54 E-value=0.0041 Score=48.78 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=31.9
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHh-----CCCeEEEEeCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVY 72 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~-----~g~rVlliD~D~~ 72 (168)
..|..+.+.+|+|||++|.++|...+.. .+.+|++||++..
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~ 140 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENT 140 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCC
Confidence 4566667899999999999999887520 1349999999864
No 237
>PRK05748 replicative DNA helicase; Provisional
Probab=96.54 E-value=0.0049 Score=50.92 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=36.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~ 74 (168)
..-+.++++.+|+|||+++.++|...+...|++|+++.++....
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~ 245 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAE 245 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHH
Confidence 34566779999999999999999998852699999999988553
No 238
>PTZ00301 uridine kinase; Provisional
Probab=96.53 E-value=0.0076 Score=44.80 Aligned_cols=43 Identities=33% Similarity=0.604 Sum_probs=31.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCC-CeEEEEeCCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVYGP 74 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g-~rVlliD~D~~~~ 74 (168)
..+|++ ++.+|+||||+|..|+..+....| ..|+++-.|....
T Consensus 3 ~~iIgI-aG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~ 46 (210)
T PTZ00301 3 CTVIGI-SGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR 46 (210)
T ss_pred CEEEEE-ECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence 456666 788899999999999988854134 3466888876553
No 239
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.53 E-value=0.006 Score=44.32 Aligned_cols=36 Identities=28% Similarity=0.246 Sum_probs=30.1
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
+.++-+-.|+||||++..|+..+.. .|++|+.+...
T Consensus 5 ~IvieG~~GsGKsT~~~~L~~~l~~-~g~~v~~~~~~ 40 (195)
T TIGR00041 5 FIVIEGIDGAGKTTQANLLKKLLQE-NGYDVLFTREP 40 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCC
Confidence 3444778899999999999999999 99999877543
No 240
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.52 E-value=0.004 Score=48.98 Aligned_cols=38 Identities=29% Similarity=0.232 Sum_probs=32.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
.+-+.+ .+..|+|||.++..+|..+++ .|++|.++.+.
T Consensus 156 ~~gl~L-~G~~G~GKThLa~Aia~~l~~-~g~~v~~~~~~ 193 (306)
T PRK08939 156 VKGLYL-YGDFGVGKSYLLAAIANELAK-KGVSSTLLHFP 193 (306)
T ss_pred CCeEEE-ECCCCCCHHHHHHHHHHHHHH-cCCCEEEEEHH
Confidence 344555 567899999999999999999 99999999774
No 241
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=96.52 E-value=0.003 Score=51.41 Aligned_cols=38 Identities=29% Similarity=0.376 Sum_probs=32.2
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|.+.+..+|+||||++..|.++|.+ +|.+|=-.-.-|
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~-rg~~VqpfKvGP 39 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRR-RGLKVQPFKVGP 39 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHh-cCCcccccccCC
Confidence 47788999999999999999999999 998886554433
No 242
>PRK06904 replicative DNA helicase; Validated
Probab=96.51 E-value=0.0054 Score=51.04 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=36.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..-+.++++.+|+|||+++.|+|...|...|++|+++.++...
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~ 262 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPA 262 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 4457777999999999999999999886359999999998754
No 243
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.50 E-value=0.0041 Score=46.96 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=33.2
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
..+..+..|+|||+++..++..+.+ .|++|.++.++..
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~-~~~~v~y~~~~~~ 84 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQ-RGRAVGYVPLDKR 84 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEEHHHH
Confidence 4456788899999999999999998 8999999999863
No 244
>PF12846 AAA_10: AAA-like domain
Probab=96.50 E-value=0.0043 Score=47.69 Aligned_cols=35 Identities=31% Similarity=0.331 Sum_probs=31.1
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
++.++.|+||||++.++...+.. .|.+++++|...
T Consensus 5 ~i~G~tGsGKT~~~~~l~~~~~~-~g~~~~i~D~~g 39 (304)
T PF12846_consen 5 LILGKTGSGKTTLLKNLLEQLIR-RGPRVVIFDPKG 39 (304)
T ss_pred EEECCCCCcHHHHHHHHHHHHHH-cCCCEEEEcCCc
Confidence 44689999999999999999999 999999997753
No 245
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.49 E-value=0.0081 Score=48.37 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=36.4
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.+++|.|++ ..|+||||++..|...|.+ .|+||.+|-.|...
T Consensus 204 ~~~~~~~~g-~~~~GKtt~~~~l~~~l~~-~g~~v~~iKh~~h~ 245 (366)
T PRK14489 204 APPLLGVVG-YSGTGKTTLLEKLIPELIA-RGYRIGLIKHSHHR 245 (366)
T ss_pred CccEEEEec-CCCCCHHHHHHHHHHHHHH-cCCEEEEEEECCcc
Confidence 477888865 6899999999999999999 99999999977643
No 246
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=96.48 E-value=0.0065 Score=43.74 Aligned_cols=36 Identities=33% Similarity=0.427 Sum_probs=25.9
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
|.++.+ .|=||||.|..+|...+- .|+||+++=+=-
T Consensus 6 i~vytG-~GKGKTTAAlGlalRA~G-~G~rV~ivQFlK 41 (172)
T PF02572_consen 6 IQVYTG-DGKGKTTAALGLALRAAG-HGMRVLIVQFLK 41 (172)
T ss_dssp EEEEES-SSS-HHHHHHHHHHHHHC-TT--EEEEESS-
T ss_pred EEEEeC-CCCCchHHHHHHHHHHHh-CCCEEEEEEEec
Confidence 444443 466999999999999999 999999997743
No 247
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.46 E-value=0.0063 Score=43.97 Aligned_cols=35 Identities=31% Similarity=0.263 Sum_probs=29.5
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
.++-+..|+||||++..|+..+.. .|.+|+.+...
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~-~g~~v~~~~~~ 37 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEA-RGYEVVLTREP 37 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCC
Confidence 344678899999999999999988 99999877653
No 248
>PRK08840 replicative DNA helicase; Provisional
Probab=96.46 E-value=0.0053 Score=50.98 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=36.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..-+.++++.+|+|||+++.|+|...|...|++|+++.++...
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~ 258 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPA 258 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCH
Confidence 4556777999999999999999999985369999999998754
No 249
>PRK08181 transposase; Validated
Probab=96.46 E-value=0.0037 Score=48.23 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=30.7
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
.++.+..|+|||.++..+|..+.+ .|++|+.+.+.
T Consensus 109 lll~Gp~GtGKTHLa~Aia~~a~~-~g~~v~f~~~~ 143 (269)
T PRK08181 109 LLLFGPPGGGKSHLAAAIGLALIE-NGWRVLFTRTT 143 (269)
T ss_pred EEEEecCCCcHHHHHHHHHHHHHH-cCCceeeeeHH
Confidence 445678899999999999999999 99999999863
No 250
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=96.45 E-value=0.0062 Score=50.99 Aligned_cols=71 Identities=24% Similarity=0.194 Sum_probs=51.4
Q ss_pred CCeEEEEecC---CCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeee
Q 030973 30 VKDVIAVASG---KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKC 104 (168)
Q Consensus 30 ~~~vI~v~s~---kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (168)
.+|.|.|++- .-|+||||++..|+..|.+ .|+++++- .+.||+.=.||+.....-.-...+.|.+.-|+++
T Consensus 62 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~-lgk~~~~~---lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHf 135 (587)
T PRK13507 62 DGKYIDVTAITPTPLGEGKSTTTMGLVQGLGK-RGKKVSGA---IRQPSGGPTMNIKGSAAGGGLSQCIPLTPFSLGL 135 (587)
T ss_pred CCeEEEEeccCCCCCCCCccchhhhHHHHHHh-hcCceEEE---EecCCcCCcCCcccccCCCccccccchhhccccc
Confidence 4788887764 5699999999999999999 99998875 4567777778887655444344455544444443
No 251
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.41 E-value=0.023 Score=40.90 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=30.4
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
|.++++-=|+||||+..+|.. ... .|.|+.+|-.|...
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~-~~~~~~vI~ne~g~ 39 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNR-QGERVAVIVNEFGE 39 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHT-TTS-EEEEECSTTS
T ss_pred EEEEEcCCCCCHHHHHHHHHH-Hhc-CCceeEEEEccccc
Confidence 445567779999999999998 555 89999999988765
No 252
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=96.39 E-value=0.0025 Score=52.02 Aligned_cols=70 Identities=23% Similarity=0.255 Sum_probs=49.2
Q ss_pred CCCeEEEEecC---CCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCe
Q 030973 29 GVKDVIAVASG---KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGV 102 (168)
Q Consensus 29 ~~~~vI~v~s~---kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (168)
+.+|.|.|++- .-|+||||++..|+.+|.+ .|+++.+- .+.||+.=.||+.....-.-...+.|.+.-|+
T Consensus 50 ~~gKlILVTaitPTPaGEGKsTttiGL~~al~~-lgK~~i~a---lRePSlGP~fGiKGGAaGGGyaqv~PmediNL 122 (554)
T COG2759 50 PDGKLILVTAITPTPAGEGKTTTTIGLVDALNK-LGKKAIIA---LREPSLGPVFGIKGGAAGGGYAQVLPMEDINL 122 (554)
T ss_pred CCceEEEEEecCCCCCCCCcceeeehHHHHHHh-cCchheEE---eccCCcCCccccccccCCCceeeeeehhhccc
Confidence 35788887764 4599999999999999999 99998764 45677777888776543333333444443333
No 253
>PLN02200 adenylate kinase family protein
Probab=96.39 E-value=0.0052 Score=46.42 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=26.9
Q ss_pred CCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 21 GSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 21 ~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
...++.++.+.+.+.++.+.+|+||||+|..||..+
T Consensus 32 ~~~~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 32 EERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred ccccCCccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344444455555777888999999999999998765
No 254
>PRK08116 hypothetical protein; Validated
Probab=96.38 E-value=0.0059 Score=47.07 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=31.4
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
-.++.+..|+|||.++..+|..+.+ .|++|+++++.
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~-~~~~v~~~~~~ 151 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIE-KGVPVIFVNFP 151 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEHH
Confidence 3455678899999999999999999 89999999864
No 255
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.38 E-value=0.0076 Score=45.24 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=32.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEE-EeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL-LDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVll-iD~D~~~ 73 (168)
..+|++ ++..|+||||++..|+..+.. .+..+.+ |.+|...
T Consensus 33 ~~iigi-~G~~GsGKTTl~~~L~~~l~~-~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 33 RTIVGI-AGPPGAGKSTLAEFLEALLQQ-DGELPAIQVPMDGFH 74 (229)
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHHHhhh-ccCCceEEEeccccc
Confidence 445555 689999999999999999988 6666655 7777644
No 256
>PRK06321 replicative DNA helicase; Provisional
Probab=96.36 E-value=0.0066 Score=50.52 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=36.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..-+.++++.+|+|||+++.++|..+|...|++|+++.++...
T Consensus 225 ~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~ 267 (472)
T PRK06321 225 PSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTV 267 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 3457777999999999999999999985369999999998854
No 257
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=96.36 E-value=0.0038 Score=52.23 Aligned_cols=75 Identities=23% Similarity=0.179 Sum_probs=44.6
Q ss_pred eecCceeeccccCCccc-ccCCCCeEEEEecC---CCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC
Q 030973 9 TRLGGVRYYAAFGSKDL-KIDGVKDVIAVASG---KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (168)
Q Consensus 9 e~~~~~r~~~~~~~~~~-~~~~~~~vI~v~s~---kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~ 84 (168)
|-|..-+..+.+...+. +....+|.|.|++- .-|+||||++..|+..|++ .|+++.+- .+.||+.=.||+..
T Consensus 31 ~~yG~~kaKi~~~~~~~~~~~~~gklilVTaitPTp~GEGKtTttiGL~~al~~-lg~~~~~~---lRePSlGP~fG~KG 106 (557)
T PF01268_consen 31 EPYGRYKAKIDLSVLERLKDKPDGKLILVTAITPTPAGEGKTTTTIGLAQALNR-LGKKAIAA---LREPSLGPVFGIKG 106 (557)
T ss_dssp EEETTTEEEE-TCHHHHTTTS---EEEEEEESS--TTS-SHHHHHHHHHHHHHH-TT--EEEE---E----CHHHHCST-
T ss_pred HhcCCCCcEeChHHHhhccccCCCcEEEEEecCCCCCCCCceeHHHHHHHHHHh-cCCceEEE---EecCCCCCccCccc
Confidence 44555555554442211 12345888888764 5699999999999999999 99998875 46678888899886
Q ss_pred CCC
Q 030973 85 KPE 87 (168)
Q Consensus 85 ~~~ 87 (168)
...
T Consensus 107 GAa 109 (557)
T PF01268_consen 107 GAA 109 (557)
T ss_dssp STT
T ss_pred ccc
Confidence 543
No 258
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.35 E-value=0.0056 Score=44.73 Aligned_cols=36 Identities=33% Similarity=0.486 Sum_probs=28.8
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
|++ ++..|+||||++..|+..+ .+.++.++.+|...
T Consensus 2 igi-~G~~GsGKSTl~~~l~~~l---~~~~~~v~~~D~~~ 37 (198)
T cd02023 2 IGI-AGGSGSGKTTVAEEIIEQL---GNPKVVIISQDSYY 37 (198)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHh---CCCCeEEEEecccc
Confidence 444 6779999999999999887 35688899988644
No 259
>PF05729 NACHT: NACHT domain
Probab=96.33 E-value=0.0052 Score=42.93 Aligned_cols=27 Identities=41% Similarity=0.412 Sum_probs=23.8
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQ 61 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g 61 (168)
+.++.+.+|+||||++..++..++. .+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~-~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAE-EE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh-cC
Confidence 4667899999999999999999998 54
No 260
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.32 E-value=0.006 Score=48.81 Aligned_cols=39 Identities=31% Similarity=0.360 Sum_probs=33.5
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHH--HHhCCCeEEEEeCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVAL--ASKCQLKVGLLDADV 71 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~l--a~~~g~rVlliD~D~ 71 (168)
|.+.++.+.+|+|||.++.+++..+ .. .+.+++++-.+.
T Consensus 1 K~v~~I~G~aGTGKTvla~~l~~~l~~~~-~~~~~~~l~~n~ 41 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLALNLAKELQNSE-EGKKVLYLCGNH 41 (352)
T ss_pred CeEEEEEecCCcCHHHHHHHHHHHhhccc-cCCceEEEEecc
Confidence 4578889999999999999999999 77 788888777765
No 261
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.31 E-value=0.0037 Score=44.42 Aligned_cols=24 Identities=42% Similarity=0.422 Sum_probs=20.5
Q ss_pred EEecCCCCCChhhHHHHHHHHHHH
Q 030973 35 AVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
..+|+++|+||||+|..||..+..
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCC
Confidence 445999999999999999987754
No 262
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.30 E-value=0.0069 Score=47.76 Aligned_cols=40 Identities=25% Similarity=0.213 Sum_probs=32.4
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhC------CCeEEEEeCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADVY 72 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~------g~rVlliD~D~~ 72 (168)
..+..+.+.+|+|||++|.++|...+. . +.+|++||++..
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~-~~~~gg~~~~~~yi~te~~ 147 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQL-PEEKGGLEGKAVYIDTEGT 147 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhcc-ccccCCCCceEEEEeCCCC
Confidence 455666789999999999999988764 3 359999999864
No 263
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.30 E-value=0.0039 Score=42.08 Aligned_cols=42 Identities=29% Similarity=0.249 Sum_probs=30.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhC-----CCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC-----QLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~-----g~rVlliD~D~~~ 73 (168)
.+.+.++.+..|+|||+++.+++..+.. . +.+|+.+++....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNA-EAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHH-HHHHCCCEEEEEEEHHHHS
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHH-hhhccCCCcEEEEEeCCCC
Confidence 3456667889999999999999999876 4 6788888876644
No 264
>PRK09165 replicative DNA helicase; Provisional
Probab=96.27 E-value=0.0084 Score=50.23 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=36.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHh--------------CCCeEEEEeCCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASK--------------CQLKVGLLDADVYGP 74 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~--------------~g~rVlliD~D~~~~ 74 (168)
..-+.++++.+|+|||+++.++|...|.. .|++|+++.++....
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ 273 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAE 273 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHH
Confidence 34567779999999999999999999862 278999999988553
No 265
>PRK07004 replicative DNA helicase; Provisional
Probab=96.26 E-value=0.0088 Score=49.65 Aligned_cols=43 Identities=19% Similarity=0.390 Sum_probs=36.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..-+.++++.+|+|||+++.++|...|...|++|+++.++...
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~ 254 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPG 254 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence 3456677999999999999999999885369999999998855
No 266
>PRK06921 hypothetical protein; Provisional
Probab=96.25 E-value=0.0072 Score=46.57 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=31.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDA 69 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~ 69 (168)
...+.+ .+..|+|||.++..+|..+.+ . |++|+.+.+
T Consensus 117 ~~~l~l-~G~~G~GKThLa~aia~~l~~-~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIAL-LGQPGSGKTHLLTAAANELMR-KKGVPVLYFPF 154 (266)
T ss_pred CCeEEE-ECCCCCcHHHHHHHHHHHHhh-hcCceEEEEEH
Confidence 344555 568899999999999999998 7 999999986
No 267
>PRK06851 hypothetical protein; Provisional
Probab=96.24 E-value=0.016 Score=46.65 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=39.9
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccc
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMM 79 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~ 79 (168)
..+.+.++.+.+|+||||+...++..+.+ +|.+|.+.-|-....++..+
T Consensus 212 ~~~~~~~i~G~pG~GKstl~~~i~~~a~~-~G~~v~~~hC~~dPdslD~v 260 (367)
T PRK06851 212 GVKNRYFLKGRPGTGKSTMLKKIAKAAEE-RGFDVEVYHCGFDPDSLDMV 260 (367)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCCcceE
Confidence 35666777899999999999999999999 99999999886655444433
No 268
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.22 E-value=0.0081 Score=44.07 Aligned_cols=37 Identities=32% Similarity=0.340 Sum_probs=29.4
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
.+.++.+.+|+||||+...+...+.. .|++|+++-.-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~-~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEA-AGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHH-TT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHh-CCCeEEEECCc
Confidence 35555778999999999999999999 89999998654
No 269
>PF13173 AAA_14: AAA domain
Probab=96.22 E-value=0.0078 Score=40.92 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=30.6
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+++++ .+..|+||||++.+++..+- ...+++.+|+|-..
T Consensus 3 ~~~~l-~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 3 KIIIL-TGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPR 41 (128)
T ss_pred CeEEE-ECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHH
Confidence 44444 56779999999999998876 36789999998644
No 270
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.22 E-value=0.0077 Score=45.07 Aligned_cols=39 Identities=36% Similarity=0.377 Sum_probs=30.8
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHh-CCCeEEEEeCCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDADVYG 73 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~-~g~rVlliD~D~~~ 73 (168)
|++ ++..|+||||+|..|+..+... .+.+|.+|.+|-..
T Consensus 2 igI-~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 2 IGI-AGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred EEe-eCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 445 6889999999999999988641 35689999888754
No 271
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.22 E-value=0.011 Score=46.10 Aligned_cols=43 Identities=35% Similarity=0.352 Sum_probs=32.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHh-CCCeEEEEeCCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDADVYGP 74 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~-~g~rVlliD~D~~~~ 74 (168)
+-+|++ .+..|+||||++..|...+.+. .+.+|.++.+|-...
T Consensus 62 p~IIGI-aG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 62 PYIISI-AGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 445555 7888999999999998888741 245899999997553
No 272
>PRK06761 hypothetical protein; Provisional
Probab=96.21 E-value=0.0082 Score=46.60 Aligned_cols=40 Identities=33% Similarity=0.401 Sum_probs=31.7
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEE-EeCCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL-LDADVYG 73 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVll-iD~D~~~ 73 (168)
.+.++.+.+|+||||++..|+..+.. .|.+|-. .+.|...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~-~g~~v~~~~~~~~~~ 44 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ-NGIEVELYLEGNLDH 44 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc-CceEEEEEecCCCCC
Confidence 35566778999999999999999988 8888875 5666534
No 273
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.20 E-value=0.0079 Score=51.84 Aligned_cols=45 Identities=27% Similarity=0.197 Sum_probs=38.1
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcc
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP 77 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~ 77 (168)
..+.++.+.+|+||||+|..|+..|.. .|..+.++|.|..+..+.
T Consensus 460 ~~~i~~~G~~gsGKst~a~~l~~~l~~-~~~~~~~l~~D~~r~~l~ 504 (632)
T PRK05506 460 PATVWFTGLSGSGKSTIANLVERRLHA-LGRHTYLLDGDNVRHGLN 504 (632)
T ss_pred cEEEEecCCCCchHHHHHHHHHHHHHH-cCCCEEEEcChhhhhccC
Confidence 445556889999999999999999998 899999999998765543
No 274
>COG4240 Predicted kinase [General function prediction only]
Probab=96.11 E-value=0.012 Score=44.25 Aligned_cols=40 Identities=30% Similarity=0.298 Sum_probs=35.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCC-CeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g-~rVlliD~D~ 71 (168)
.+.|..+|+.-|+||||+++.+-..|++ +| .||+-..+|-
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~-kg~ert~~lSLDD 89 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAA-KGLERTATLSLDD 89 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHH-hcccceEEeehhh
Confidence 4667777889999999999999999999 77 7999999886
No 275
>PRK07933 thymidylate kinase; Validated
Probab=96.11 E-value=0.013 Score=43.67 Aligned_cols=35 Identities=29% Similarity=0.274 Sum_probs=30.5
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
.++-+--|+||||.+..|+.+|.. .|.+|.++...
T Consensus 3 IviEG~dGsGKST~~~~L~~~L~~-~g~~v~~~~~P 37 (213)
T PRK07933 3 IAIEGVDGAGKRTLTEALRAALEA-RGRSVATLAFP 37 (213)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence 344677899999999999999999 99999998764
No 276
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.10 E-value=0.011 Score=50.24 Aligned_cols=44 Identities=36% Similarity=0.335 Sum_probs=35.3
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+.+.+| ++.+..|+||||++..||..|....|.++.++|.|...
T Consensus 390 ~~g~~I-vl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr 433 (568)
T PRK05537 390 KQGFTV-FFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVR 433 (568)
T ss_pred CCCeEE-EEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHH
Confidence 335555 44689999999999999999975357789999999754
No 277
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.10 E-value=0.005 Score=42.82 Aligned_cols=34 Identities=38% Similarity=0.477 Sum_probs=26.4
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~ 74 (168)
.++.+..|+||||+|..|+..+ + ..++|.|....
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~----~--~~~i~~D~~~~ 35 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL----G--APFIDGDDLHP 35 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc----C--CEEEeCccccc
Confidence 4667999999999999988764 2 25678888664
No 278
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.10 E-value=0.012 Score=48.24 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=32.1
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+.|.-+++..|+||||++..|...+.. .|.+|..|..|-.
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L~~lL~~-~g~~vgvISiDDf 251 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFALDYLFRV-TGRKSATLSIDDF 251 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcc-cCCceEEEEECCc
Confidence 344445788899999999999888877 7888888877753
No 279
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.07 E-value=0.0068 Score=44.46 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=30.8
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~ 75 (168)
...+++.++.+.+|+||||++..+...+. +...+.||.|.....
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~---~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG---GGGIVVIDADEFRQF 55 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT----TT-SEEE-GGGGGGG
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc---CCCeEEEehHHHHHh
Confidence 34778888899999999999988866553 567899999986533
No 280
>PLN02759 Formate--tetrahydrofolate ligase
Probab=96.05 E-value=0.018 Score=48.72 Aligned_cols=92 Identities=22% Similarity=0.191 Sum_probs=56.9
Q ss_pred eecCceeeccccCCccc-ccCCCCeEEEEec---CCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC
Q 030973 9 TRLGGVRYYAAFGSKDL-KIDGVKDVIAVAS---GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (168)
Q Consensus 9 e~~~~~r~~~~~~~~~~-~~~~~~~vI~v~s---~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~ 84 (168)
|.|...+..+.+...+. .....+|.|.|++ ..-|+||||++..|+..|.+-.|+++++- .+.||+.=.||+..
T Consensus 46 e~YG~ykAKi~l~~l~~~~~~~~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~~~---lRePSlGP~FGiKG 122 (637)
T PLN02759 46 DLYGKYKAKVLLSVRDRLAGAPDGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVVTC---LRQPSQGPTFGIKG 122 (637)
T ss_pred ccCCCcceEEcHHHHhhhccCCCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeEEE---eecCCcCCcCCccc
Confidence 44444554444433221 1223467777765 45699999999999999994279998875 45677777788876
Q ss_pred CCCccccCceeecccCCee
Q 030973 85 KPEVTKDMKMVPIENYGVK 103 (168)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ 103 (168)
...-.-...+.+.+.-|++
T Consensus 123 GAaGGGysQv~Pme~iNLH 141 (637)
T PLN02759 123 GAAGGGYSQVIPMEEFNLH 141 (637)
T ss_pred ccCCCcccccccHhhhccc
Confidence 5443333444444444443
No 281
>PRK08118 topology modulation protein; Reviewed
Probab=96.01 E-value=0.0078 Score=43.06 Aligned_cols=25 Identities=44% Similarity=0.549 Sum_probs=19.1
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHH
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALA 57 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la 57 (168)
+.|.| .+.+|+||||+|..|+..+.
T Consensus 2 ~rI~I-~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIIL-IGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEE-ECCCCCCHHHHHHHHHHHhC
Confidence 34555 46889999999998887653
No 282
>PRK05636 replicative DNA helicase; Provisional
Probab=96.01 E-value=0.012 Score=49.35 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=36.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..-+.++++.+|+|||+++.++|...+...|++|+++.++...
T Consensus 264 ~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~ 306 (505)
T PRK05636 264 GGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSK 306 (505)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCH
Confidence 4556677999999999999999998885268999999888754
No 283
>PLN02796 D-glycerate 3-kinase
Probab=96.01 E-value=0.011 Score=47.04 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=30.8
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.|.-+++..|+||||++..|...+.. .|.++..|-.|-
T Consensus 100 pliIGI~G~sGSGKSTLa~~L~~lL~~-~g~~~g~IsiDd 138 (347)
T PLN02796 100 PLVIGISAPQGCGKTTLVFALVYLFNA-TGRRAASLSIDD 138 (347)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHhcc-cCCceeEEEECC
Confidence 344444688999999999999999987 777887776654
No 284
>PRK06217 hypothetical protein; Validated
Probab=96.00 E-value=0.0079 Score=43.49 Aligned_cols=31 Identities=35% Similarity=0.537 Sum_probs=23.2
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
|.+ .+.+|+||||++..|+..+ |.+ .+|+|.
T Consensus 4 I~i-~G~~GsGKSTla~~L~~~l----~~~--~~~~D~ 34 (183)
T PRK06217 4 IHI-TGASGSGTTTLGAALAERL----DIP--HLDTDD 34 (183)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHc----CCc--EEEcCc
Confidence 444 6789999999999999765 433 577774
No 285
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.97 E-value=0.013 Score=49.10 Aligned_cols=40 Identities=28% Similarity=0.269 Sum_probs=34.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+.++.+ .+..|+|||+++.+++...++ .|.+|++|.++..
T Consensus 273 g~~~li-~G~~G~GKT~l~~~~~~~~~~-~g~~~~yis~e~~ 312 (509)
T PRK09302 273 GSIILV-SGATGTGKTLLASKFAEAACR-RGERCLLFAFEES 312 (509)
T ss_pred CcEEEE-EcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecCC
Confidence 445555 689999999999999999999 9999999999864
No 286
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=95.96 E-value=0.012 Score=48.45 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=34.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
|+.|.|++...|+||||+++.|+..|.+ +|.+|-.+=..+
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l~~-~g~~v~~~K~Gp 40 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRALED-AGYAVQPAKAGP 40 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHH-CCCeeEEEeeCC
Confidence 3468999999999999999999999999 999987665543
No 287
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.87 E-value=0.008 Score=42.55 Aligned_cols=32 Identities=38% Similarity=0.358 Sum_probs=23.9
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..++.+.+|+||||++..||..+. . .++|.|.
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l~----~--~~~d~d~ 37 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRLG----Y--DFIDTDH 37 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC----C--CEEEChH
Confidence 445578999999999999998773 2 4456664
No 288
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=95.87 E-value=0.089 Score=41.64 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=30.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~ 75 (168)
.++..+ ++-=|+||||+.-++... . .|+|+.+|--|...-+
T Consensus 4 ipv~il-tGFLGaGKTTll~~ll~~--~-~~~riaVi~NEfG~v~ 44 (318)
T PRK11537 4 IAVTLL-TGFLGAGKTTLLRHILNE--Q-HGYKIAVIENEFGEVS 44 (318)
T ss_pred cCEEEE-EECCCCCHHHHHHHHHhc--c-cCCcccccccCcCCcc
Confidence 444444 666789999999998754 4 6899999988875433
No 289
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.83 E-value=0.0082 Score=40.16 Aligned_cols=21 Identities=48% Similarity=0.466 Sum_probs=18.6
Q ss_pred EecCCCCCChhhHHHHHHHHH
Q 030973 36 VASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~l 56 (168)
++++..|+||||+|..|+..+
T Consensus 2 ~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 2 GISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999887
No 290
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=95.81 E-value=0.0088 Score=45.12 Aligned_cols=32 Identities=28% Similarity=0.276 Sum_probs=26.7
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
|+|+ |+.||||+...||..+.. .|+||++--+
T Consensus 2 i~~v---G~gGKTtl~~~l~~~~~~-~g~~v~~TTT 33 (232)
T TIGR03172 2 IAFV---GAGGKTSTMFWLAAEYRK-EGYRVLVTTT 33 (232)
T ss_pred EEEE---cCCcHHHHHHHHHHHHHH-CCCeEEEECC
Confidence 4554 458999999999999999 9999998544
No 291
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.80 E-value=0.021 Score=42.58 Aligned_cols=39 Identities=33% Similarity=0.426 Sum_probs=31.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.-+|++ ++.+|+||||+|..|...|.. .+|.+|-.|-..
T Consensus 8 ~iiIgI-aG~SgSGKTTva~~l~~~~~~---~~~~~I~~D~YY 46 (218)
T COG0572 8 VIIIGI-AGGSGSGKTTVAKELSEQLGV---EKVVVISLDDYY 46 (218)
T ss_pred eEEEEE-eCCCCCCHHHHHHHHHHHhCc---CcceEeeccccc
Confidence 345555 788999999999999998854 489999988755
No 292
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.77 E-value=0.013 Score=42.19 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=19.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
.++|++. +.+|+||||++..|+..+
T Consensus 3 ~~ii~i~-G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIV-GGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 5667775 459999999999998655
No 293
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=95.75 E-value=0.039 Score=41.47 Aligned_cols=35 Identities=37% Similarity=0.403 Sum_probs=28.4
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCC--eEEEEeC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQL--KVGLLDA 69 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~--rVlliD~ 69 (168)
+.|+++-+-+||||.|..|..+|.+ +|. .|.++|=
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~-~~~K~~v~ii~d 39 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKE-RGTKQSVRIIDD 39 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHh-hcccceEEEech
Confidence 3456889999999999999999999 884 4666653
No 294
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.74 E-value=0.028 Score=45.35 Aligned_cols=38 Identities=29% Similarity=0.338 Sum_probs=31.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.+|.|+ +..|+||||++..|...|.. . .||.+|..+.
T Consensus 5 ~~~i~i~-G~~gsGKTTl~~~l~~~l~~-~-~~V~~ik~~~ 42 (369)
T PRK14490 5 PFEIAFC-GYSGSGKTTLITALVRRLSE-R-FSVGYYKHGC 42 (369)
T ss_pred CEEEEEE-eCCCCCHHHHHHHHHHHHhh-C-ceEEEEEeCC
Confidence 5567775 56799999999999999999 7 9999998644
No 295
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.73 E-value=0.018 Score=48.15 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=32.6
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.+.++.+.+|+||||+|.+++..-++..|.++++|.++..
T Consensus 22 ~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~ 61 (484)
T TIGR02655 22 RSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES 61 (484)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 4455578999999999999998866614999999999853
No 296
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.68 E-value=0.011 Score=43.09 Aligned_cols=32 Identities=28% Similarity=0.266 Sum_probs=24.4
Q ss_pred ecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+++.+|+||||+|..|+..+. .+.+|..|-..
T Consensus 4 i~G~sgsGKTtla~~l~~~~~-----~~~~i~~Ddf~ 35 (187)
T cd02024 4 ISGVTNSGKTTLAKLLQRILP-----NCCVIHQDDFF 35 (187)
T ss_pred EECCCCCCHHHHHHHHHHHcC-----CCeEEcccccc
Confidence 468999999999999988752 36677777543
No 297
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.64 E-value=0.016 Score=41.61 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=22.7
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeE
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKV 64 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rV 64 (168)
+.+++.|+||||+...+...+.. .|.+|
T Consensus 3 ~iTG~pG~GKTTll~k~i~~l~~-~~~~v 30 (168)
T PF03266_consen 3 FITGPPGVGKTTLLKKVIEELKK-KGLPV 30 (168)
T ss_dssp EEES-TTSSHHHHHHHHHHHHHH-TCGGE
T ss_pred EEECcCCCCHHHHHHHHHHHhhc-cCCcc
Confidence 56789999999999999999977 55554
No 298
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.63 E-value=0.023 Score=41.86 Aligned_cols=38 Identities=29% Similarity=0.501 Sum_probs=27.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+.+|++ ++.+|+||||++..|+..+.. ..+.++..|..
T Consensus 6 g~vi~I-~G~sGsGKSTl~~~l~~~l~~---~~~~~i~~D~~ 43 (207)
T TIGR00235 6 GIIIGI-GGGSGSGKTTVARKIYEQLGK---LEIVIISQDNY 43 (207)
T ss_pred eEEEEE-ECCCCCCHHHHHHHHHHHhcc---cCCeEeccccc
Confidence 555555 778999999999999887643 35666666654
No 299
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=95.62 E-value=0.017 Score=43.07 Aligned_cols=41 Identities=32% Similarity=0.239 Sum_probs=34.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHH-HhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la-~~~g~rVlliD~D~~~ 73 (168)
.+-++|+ +.-|+|||+++..|...+. + .+.+++++|..-..
T Consensus 23 ~~H~~I~-G~TGsGKS~~~~~ll~~l~~~-~~~~~ii~D~~GEY 64 (229)
T PF01935_consen 23 NRHIAIF-GTTGSGKSNTVKVLLEELLKK-KGAKVIIFDPHGEY 64 (229)
T ss_pred cceEEEE-CCCCCCHHHHHHHHHHHHHhc-CCCCEEEEcCCCcc
Confidence 4567765 4668999999999999999 7 89999999987644
No 300
>PLN02348 phosphoribulokinase
Probab=95.62 E-value=0.029 Score=45.51 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=31.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCC---------------CeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ---------------LKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g---------------~rVlliD~D~~~ 73 (168)
.-+|+ +++.+|+||||+|..|+..|.. .+ ..|.+|-+|-.+
T Consensus 49 p~IIG-IaG~SGSGKSTfA~~L~~~Lg~-~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 49 TVVIG-LAADSGCGKSTFMRRLTSVFGG-AAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred CEEEE-EECCCCCCHHHHHHHHHHHHhh-ccCCCccccccccccccCceEEEEccccc
Confidence 44455 4889999999999999999975 42 468888888654
No 301
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.59 E-value=0.0091 Score=40.94 Aligned_cols=32 Identities=34% Similarity=0.416 Sum_probs=24.7
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
|.++.+.+|+||||++..|+..+ + ..+|+.|.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~----~--~~~i~~D~ 32 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL----G--AVVISQDE 32 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS----T--EEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHC----C--CEEEeHHH
Confidence 45668899999999988886644 3 56788886
No 302
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.58 E-value=0.026 Score=40.53 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=35.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHH-HhCCCeEEEEeCCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYGP 74 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la-~~~g~rVlliD~D~~~~ 74 (168)
++...++.+..|+|||.+|..||..+- . ...+.+.+|+.....
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~-~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVG-SERPLIRIDMSEYSE 45 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-S-SCCEEEEEEGGGHCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccC-CccchHHHhhhcccc
Confidence 344566678889999999999999998 6 778999999987553
No 303
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.57 E-value=0.027 Score=41.36 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=27.5
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
+.++++..|+||||+...++..+....+.+++.++-.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~ 39 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP 39 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC
Confidence 3455788999999999999988876235566666543
No 304
>PRK06851 hypothetical protein; Provisional
Probab=95.56 E-value=0.044 Score=44.17 Aligned_cols=45 Identities=22% Similarity=0.258 Sum_probs=35.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV 76 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l 76 (168)
.+.+.+.++.+|+||||+...++..+.+ .|.+|-.+=+.....++
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~-~g~~Ve~~~~~~d~~sl 73 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLE-KGYDVEFLHCSSDNDSL 73 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEcCCCCCce
Confidence 5667778999999999999999999998 88887766444433333
No 305
>PLN02924 thymidylate kinase
Probab=95.55 E-value=0.03 Score=41.96 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=31.5
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
+.+..|+| =+-.|+||||.+..|+..|.. .|.+|.++..
T Consensus 14 ~~g~~Ivi-EGiDGsGKsTq~~~L~~~l~~-~g~~v~~~~e 52 (220)
T PLN02924 14 SRGALIVL-EGLDRSGKSTQCAKLVSFLKG-LGVAAELWRF 52 (220)
T ss_pred CCCeEEEE-ECCCCCCHHHHHHHHHHHHHh-cCCCceeeeC
Confidence 33555555 678899999999999999999 9999876643
No 306
>PRK07773 replicative DNA helicase; Validated
Probab=95.51 E-value=0.027 Score=50.52 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=36.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~ 74 (168)
..-+.++++.+|+|||++|.++|...|...|++|+++.++....
T Consensus 216 ~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ 259 (886)
T PRK07773 216 PGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKE 259 (886)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHH
Confidence 34566779999999999999999999863589999999987553
No 307
>PRK06547 hypothetical protein; Provisional
Probab=95.51 E-value=0.018 Score=41.43 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=25.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+.+|+| .+..|+||||+|..|+..+ + +.++++|-..
T Consensus 15 ~~~i~i-~G~~GsGKTt~a~~l~~~~----~--~~~~~~d~~~ 50 (172)
T PRK06547 15 MITVLI-DGRSGSGKTTLAGALAART----G--FQLVHLDDLY 50 (172)
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHHHh----C--CCeeccccee
Confidence 455555 6899999999998888763 3 3455666433
No 308
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.49 E-value=0.033 Score=40.61 Aligned_cols=37 Identities=27% Similarity=0.219 Sum_probs=29.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
++.|+| -+..|+||||++..|+..+.. .|..|.....
T Consensus 3 ~~~I~i-eG~~gsGKsT~~~~L~~~l~~-~~~~~~~~~~ 39 (205)
T PRK00698 3 GMFITI-EGIDGAGKSTQIELLKELLEQ-QGRDVVFTRE 39 (205)
T ss_pred ceEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCceeEeeC
Confidence 345555 688899999999999999988 8877776543
No 309
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.48 E-value=0.028 Score=37.66 Aligned_cols=33 Identities=30% Similarity=0.310 Sum_probs=26.3
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+..+..|+|||+++..+|..+ +..++-+|+...
T Consensus 2 ll~G~~G~GKT~l~~~la~~l----~~~~~~i~~~~~ 34 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL----GFPFIEIDGSEL 34 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT----TSEEEEEETTHH
T ss_pred EEECcCCCCeeHHHHHHHhhc----cccccccccccc
Confidence 346788999999999998876 567888887653
No 310
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=95.45 E-value=0.27 Score=39.30 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=31.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP 77 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~ 77 (168)
.++ .++++-=|+||||+.-.+... . .|+|+.+|--|...-++.
T Consensus 4 ipv-~iltGFLGaGKTTll~~ll~~--~-~~~~iavi~Ne~G~~~ID 46 (341)
T TIGR02475 4 IPV-TIVTGFLGAGKTTLIRHLLQN--A-AGRRIAVIVNEFGDLGID 46 (341)
T ss_pred cCE-EEEEECCCCCHHHHHHHHHhc--c-CCCcEEEEECCCccccch
Confidence 444 444566789999999998764 3 689999999887654433
No 311
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.43 E-value=0.018 Score=42.42 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=26.8
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.+.++++.+|+||||+|..||..+ |..+ ++..|.-.
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~----~~~~-~~~~D~~r 39 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHR----AIDI-VLSGDYLR 39 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc----CCeE-EehhHHHH
Confidence 466778999999999999888764 4333 67777533
No 312
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.40 E-value=0.021 Score=40.66 Aligned_cols=39 Identities=23% Similarity=0.141 Sum_probs=28.7
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.+.++.+..|+|||++...+...+.+ .+.-++.++++..
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~~~~~-~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLDRLAE-RGGYVISINCDDS 63 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHHHHHH-HT--EEEEEEETT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh-cCCEEEEEEEecc
Confidence 45555788999999999999999998 5544888888876
No 313
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.39 E-value=0.019 Score=37.78 Aligned_cols=23 Identities=43% Similarity=0.449 Sum_probs=20.0
Q ss_pred EecCCCCCChhhHHHHHHHHHHH
Q 030973 36 VASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
++.+.+|+|||++|..||..+.+
T Consensus 2 ~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 2 WIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 34677799999999999999987
No 314
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.35 E-value=0.016 Score=39.87 Aligned_cols=22 Identities=45% Similarity=0.480 Sum_probs=18.8
Q ss_pred EEecCCCCCChhhHHHHHHHHH
Q 030973 35 AVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~l 56 (168)
.++++..|+||||+|..||..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999998766
No 315
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.33 E-value=0.028 Score=48.59 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=31.1
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
-+.++.+.+|+|||++++.+...+.+ .|++||+.-
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~-~g~~VLv~a 208 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVK-RGLRVLVTA 208 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEEc
Confidence 36677899999999999999999998 999999975
No 316
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.31 E-value=0.021 Score=47.19 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=31.4
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
-+.+ .+..|+|||+++..+|..+.+ .|.+|+.+.++.
T Consensus 143 pl~L-~G~~G~GKTHLl~Ai~~~l~~-~~~~v~yi~~~~ 179 (445)
T PRK12422 143 PIYL-FGPEGSGKTHLMQAAVHALRE-SGGKILYVRSEL 179 (445)
T ss_pred eEEE-EcCCCCCHHHHHHHHHHHHHH-cCCCEEEeeHHH
Confidence 3444 567899999999999999988 899999998753
No 317
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.29 E-value=0.017 Score=40.77 Aligned_cols=32 Identities=38% Similarity=0.444 Sum_probs=24.4
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
++.+..|+||||++..|+..+. ..+||.|...
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l~------~~~v~~D~~~ 33 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRLG------AKFIEGDDLH 33 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhcC------CeEEeCcccc
Confidence 3468899999999999987762 3567888753
No 318
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=95.28 E-value=0.021 Score=43.56 Aligned_cols=36 Identities=36% Similarity=0.492 Sum_probs=29.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+.|.+.++.+|+||||+|..+|..|.- . -+|.+|.
T Consensus 88 ~p~IILIGGasGVGkStIA~ElA~rLgI-~----~visTD~ 123 (299)
T COG2074 88 RPLIILIGGASGVGKSTIAGELARRLGI-R----SVISTDS 123 (299)
T ss_pred CCeEEEecCCCCCChhHHHHHHHHHcCC-c----eeecchH
Confidence 4678888999999999999999998865 2 3566665
No 319
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.26 E-value=0.023 Score=46.31 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=31.0
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeCCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADV 71 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~D~ 71 (168)
.++.+..|+|||+++..+|..+.+ . +.+|+.+.++.
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~-~~~~~~v~yi~~~~ 176 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILE-NNPNAKVVYVSSEK 176 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH-hCCCCcEEEEEHHH
Confidence 456789999999999999999987 6 78999998753
No 320
>PRK12338 hypothetical protein; Provisional
Probab=95.25 E-value=0.02 Score=45.25 Aligned_cols=37 Identities=32% Similarity=0.494 Sum_probs=27.4
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+.+.++++.+|+||||+|..||..+. .+ .+++.|..+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~----~~-~~~~tD~~r 40 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLN----IK-HLIETDFIR 40 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCC----Ce-EEccChHHH
Confidence 35666789999999999999988763 33 366777644
No 321
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.21 E-value=0.077 Score=47.43 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=36.7
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC--CCCcccccccC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY--GPSVPMMMKID 83 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~--~~~l~~~~~~~ 83 (168)
+.++.+..|+|||.+|..||..|-. .+.+++.+|+... ..+...++|..
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~-~~~~~~~~dmse~~~~~~~~~l~g~~ 648 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYG-GEQNLITINMSEFQEAHTVSRLKGSP 648 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhC-CCcceEEEeHHHhhhhhhhccccCCC
Confidence 4455778899999999999999977 6778899997653 23455555543
No 322
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=95.17 E-value=0.025 Score=45.05 Aligned_cols=41 Identities=27% Similarity=0.401 Sum_probs=34.9
Q ss_pred CeEEEEec-CCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVAS-GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s-~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.+||+|=| .-||+|||-++..||..|.+ .|++|.+|.=.-.
T Consensus 56 vPVIsVGNitvGGTGKTP~v~~La~~l~~-~G~~~~IlSRGYg 97 (338)
T PRK01906 56 VPVVVVGNVTVGGTGKTPTVIALVDALRA-AGFTPGVVSRGYG 97 (338)
T ss_pred CCEEEECCccCCCCChHHHHHHHHHHHHH-cCCceEEEecCCC
Confidence 67887755 46999999999999999999 9999999985543
No 323
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.10 E-value=0.021 Score=44.42 Aligned_cols=36 Identities=31% Similarity=0.231 Sum_probs=27.6
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+.+.++.+.+|+||||+|..|+..+. ....||.|..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-----~~~~l~~D~~ 37 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-----KAVNVNRDDL 37 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-----CCEEEeccHH
Confidence 45666789999999999999887651 4577787763
No 324
>PRK13973 thymidylate kinase; Provisional
Probab=95.10 E-value=0.055 Score=40.15 Aligned_cols=37 Identities=30% Similarity=0.284 Sum_probs=30.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
++.|+| =+-.|+||||.+..|+..|.. .|++|+....
T Consensus 3 g~~Ivi-EG~dGsGKtTq~~~l~~~l~~-~g~~~~~~~~ 39 (213)
T PRK13973 3 GRFITF-EGGEGAGKSTQIRLLAERLRA-AGYDVLVTRE 39 (213)
T ss_pred ceEEEE-EcCCCCCHHHHHHHHHHHHHH-CCCeEEEEEC
Confidence 344555 778899999999999999999 9999987743
No 325
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.09 E-value=0.029 Score=43.95 Aligned_cols=38 Identities=32% Similarity=0.540 Sum_probs=28.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.+.+.++++..|+||||+|..||..|. .. .+|.+|.-+
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~----~~-~vi~~D~~r 128 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLG----IR-SVIGTDSIR 128 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC----CC-EEEechHHH
Confidence 446677899999999999999998773 33 356677654
No 326
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.06 E-value=0.032 Score=46.02 Aligned_cols=35 Identities=37% Similarity=0.318 Sum_probs=28.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli 67 (168)
..=|.+ ++.+|.||||+|.+||..++. .|+=|=-+
T Consensus 263 aeGILI-AG~PGaGKsTFaqAlAefy~~-~GkiVKTm 297 (604)
T COG1855 263 AEGILI-AGAPGAGKSTFAQALAEFYAS-QGKIVKTM 297 (604)
T ss_pred hcceEE-ecCCCCChhHHHHHHHHHHHh-cCcEEeec
Confidence 444555 788999999999999999999 99844444
No 327
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=95.06 E-value=0.061 Score=41.48 Aligned_cols=43 Identities=33% Similarity=0.312 Sum_probs=35.5
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCe--EEEEeCCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLK--VGLLDADVYG 73 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~r--VlliD~D~~~ 73 (168)
+.+.|.-.++..|+||||+|..|+..+++ .+.. |-+|=+|-..
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~-~~~~~~v~lvpmDGFh 124 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSR-WPESPKVDLVTMDGFH 124 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhh-CCCCCceEEEeccccc
Confidence 35555556889999999999999999999 7665 8899998755
No 328
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=95.04 E-value=0.027 Score=44.69 Aligned_cols=42 Identities=26% Similarity=0.297 Sum_probs=35.4
Q ss_pred CCeEEEEec-CCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 30 VKDVIAVAS-GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 30 ~~~vI~v~s-~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
..+||+|=| .-||+|||-++..|+..|.+ +|++|.+|.=...
T Consensus 34 ~vpVIsVGNltvGGTGKTP~v~~L~~~L~~-~G~~~~IlSRGYg 76 (326)
T PF02606_consen 34 PVPVISVGNLTVGGTGKTPLVIWLARLLQA-RGYRPAILSRGYG 76 (326)
T ss_pred CCcEEEEcccccCCCCchHHHHHHHHHHHh-cCCceEEEcCCCC
Confidence 367888865 46899999999999999999 9999999976543
No 329
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.03 E-value=0.032 Score=39.64 Aligned_cols=33 Identities=33% Similarity=0.515 Sum_probs=24.6
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.|.+ .+-.|+||||++..||..+. . .++|.|.
T Consensus 3 ~~i~~-~G~~GsGKst~~~~la~~lg----~--~~~d~D~ 35 (171)
T PRK03731 3 QPLFL-VGARGCGKTTVGMALAQALG----Y--RFVDTDQ 35 (171)
T ss_pred CeEEE-ECCCCCCHHHHHHHHHHHhC----C--CEEEccH
Confidence 44555 58899999999999987763 3 3578775
No 330
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.99 E-value=0.04 Score=43.22 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=28.6
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDA 69 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~ 69 (168)
.++++..|+||||+...|...+.+ . +.|++.|+-
T Consensus 135 ilI~G~tGSGKTTll~al~~~i~~-~~~~~ri~tiEd 170 (299)
T TIGR02782 135 ILVVGGTGSGKTTLANALLAEIAK-NDPTDRVVIIED 170 (299)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-cCCCceEEEECC
Confidence 456899999999999999988876 4 789988873
No 331
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=94.99 E-value=0.15 Score=39.99 Aligned_cols=105 Identities=13% Similarity=0.233 Sum_probs=53.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC-CCcccccccCCCCC-ccccCceeecccCCeeeeecC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG-PSVPMMMKIDQKPE-VTKDMKMVPIENYGVKCMSMG 108 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~-~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 108 (168)
.++ .++.+-=|+||||+--.+. ....|||+.+|--.+.- ..+...+-.....+ +.+ ......+.-+=|. .
T Consensus 57 IPv-tIITGyLGaGKtTLLn~Il---~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyE--ewv~L~NGClCCt-V- 128 (391)
T KOG2743|consen 57 IPV-TIITGYLGAGKTTLLNYIL---TGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYE--EWVELRNGCLCCT-V- 128 (391)
T ss_pred cce-EEEEecccCChHHHHHHHH---ccCCCceEEEEhhhcccchhhhHHHHhccccchHHH--HHHHhcCCeEEEE-e-
Confidence 444 4445555899999966554 33389999998765533 22222222222111 000 0000000000000 0
Q ss_pred ccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHH
Q 030973 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT 157 (168)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~ 157 (168)
....-..++++.+ -+ .+||+|++.|-.-.+++.++
T Consensus 129 ------------k~~gvraie~lvq-kk-GkfD~IllETTGlAnPaPia 163 (391)
T KOG2743|consen 129 ------------KDNGVRAIENLVQ-KK-GKFDHILLETTGLANPAPIA 163 (391)
T ss_pred ------------cchHHHHHHHHHh-cC-CCcceEEEeccCCCCcHHHH
Confidence 0123457777777 33 89999999998766655543
No 332
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=94.98 E-value=0.046 Score=45.55 Aligned_cols=38 Identities=16% Similarity=0.060 Sum_probs=31.6
Q ss_pred CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
.++++.|.+++...|+||||+++.|+.+|.+ + |..+-.
T Consensus 235 ~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~-~---v~~fK~ 272 (476)
T PRK06278 235 RNKPKGIILLATGSESGKTFLTTSIAGKLRG-K---VFVAKI 272 (476)
T ss_pred hcCCCeEEEEeCCCCCCHHHHHHHHHHHHHh-C---eEEEcC
Confidence 3457889999999999999999999999987 4 555543
No 333
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.96 E-value=0.029 Score=40.22 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEecCCCCCChhhHHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALA 57 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la 57 (168)
|.++++.+|+||||+|..|+..+.
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 566789999999999999987753
No 334
>PRK04040 adenylate kinase; Provisional
Probab=94.94 E-value=0.031 Score=40.80 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=20.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALA 57 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la 57 (168)
+++|+ +.+.+|+||||++..|+..+.
T Consensus 2 ~~~i~-v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVV-VTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEE-EEeCCCCCHHHHHHHHHHHhc
Confidence 34444 477899999999999999884
No 335
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.91 E-value=0.035 Score=45.95 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=31.3
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeCCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADV 71 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~D~ 71 (168)
.++.+..|+|||+++..+|..+.+ . +.+|+.+.++.
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~v~yi~~~~ 188 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILE-KNPNAKVVYVTSEK 188 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEEEHHH
Confidence 456789999999999999999988 6 78999998864
No 336
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.90 E-value=0.039 Score=42.47 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=30.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
.+-+.++++..|+||||+...+...+.. .+++++.|+-
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~~-~~~~iitiEd 116 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELNT-PEKNIITVED 116 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhCC-CCCeEEEECC
Confidence 3446666889999999999999888876 6788888863
No 337
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=94.84 E-value=0.031 Score=40.30 Aligned_cols=33 Identities=30% Similarity=0.226 Sum_probs=26.1
Q ss_pred CCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 39 GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 39 ~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+-.|+||||.+..|+.+|.. .|.+ .++...+..
T Consensus 3 GiDGsGKtT~~~~L~~~l~~-~~~~-~~~~~~~~~ 35 (186)
T PF02223_consen 3 GIDGSGKTTQIRLLAEALKE-KGYK-VIITFPPGS 35 (186)
T ss_dssp ESTTSSHHHHHHHHHHHHHH-TTEE-EEEEESSTS
T ss_pred CCCCCCHHHHHHHHHHHHHH-cCCc-ccccCCCCC
Confidence 34699999999999999999 9988 444544433
No 338
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.83 E-value=0.058 Score=36.88 Aligned_cols=40 Identities=25% Similarity=0.220 Sum_probs=29.8
Q ss_pred ecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccc
Q 030973 37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMK 81 (168)
Q Consensus 37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~ 81 (168)
..+..|+|||+++..+|..+ +.++..+.+.... ....+++
T Consensus 4 L~G~~G~GKt~l~~~la~~~----~~~~~~i~~~~~~-~~~dl~g 43 (139)
T PF07728_consen 4 LVGPPGTGKTTLARELAALL----GRPVIRINCSSDT-TEEDLIG 43 (139)
T ss_dssp EEESSSSSHHHHHHHHHHHH----TCEEEEEE-TTTS-THHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHh----hcceEEEEecccc-cccccee
Confidence 35788999999999999988 6788888887654 4444444
No 339
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.83 E-value=0.051 Score=41.69 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=26.8
Q ss_pred ecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
..+..|+|||++|..+|. . .|.+++.+.++..
T Consensus 26 L~G~~GtGKT~lA~~la~---~-lg~~~~~i~~~~~ 57 (262)
T TIGR02640 26 LRGPAGTGKTTLAMHVAR---K-RDRPVMLINGDAE 57 (262)
T ss_pred EEcCCCCCHHHHHHHHHH---H-hCCCEEEEeCCcc
Confidence 358889999999999987 3 5889999988764
No 340
>PRK13947 shikimate kinase; Provisional
Probab=94.82 E-value=0.033 Score=39.49 Aligned_cols=30 Identities=33% Similarity=0.475 Sum_probs=22.5
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
++.+.+|+||||++..||..| |.+ ++|.|.
T Consensus 5 ~l~G~~GsGKst~a~~La~~l----g~~--~id~d~ 34 (171)
T PRK13947 5 VLIGFMGTGKTTVGKRVATTL----SFG--FIDTDK 34 (171)
T ss_pred EEEcCCCCCHHHHHHHHHHHh----CCC--EEECch
Confidence 346789999999999998776 434 466665
No 341
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=94.82 E-value=0.082 Score=43.87 Aligned_cols=119 Identities=19% Similarity=0.250 Sum_probs=68.5
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC----------------CCCccccCce-
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ----------------KPEVTKDMKM- 94 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~----------------~~~~~~~~~~- 94 (168)
+.|.+.+....+|||++++.|++.+++ +|.+|.= +-.|+-++....-... .+.......+
T Consensus 2 ~~iMv~GT~S~~GKS~~~aglcRi~~~-~G~~V~P--FK~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvLL 78 (486)
T COG1492 2 KAIMVQGTTSDAGKSFLVAGLCRILAR-RGYRVAP--FKSQNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVLL 78 (486)
T ss_pred CccEEEeccCCcchhhhhhhhhHHHHh-cCCccCC--CchhhcccccEECCCCcEEehhhhHHHHHcCCCCccccCCEEE
Confidence 357788888999999999999999999 9999852 2334444433322111 0111111111
Q ss_pred eecccCCeeeeecCccCCCCCCcc-cCc--hhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHH
Q 030973 95 VPIENYGVKCMSMGFLVPSSSPVV-WRG--PMVMSALRKMSREVDWGNLDILVIDMPPGTGDA 154 (168)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~~~-~~~--~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~ 154 (168)
.+....+..++-.|.......... +.. ......+.+.++.+. +.||+|++....+..+.
T Consensus 79 KP~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~-~~~d~Vv~EGAGSpaEi 140 (486)
T COG1492 79 KPCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLD-REYDVVVIEGAGSPAEI 140 (486)
T ss_pred eecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHhh-hcccEEEEecCCChhhc
Confidence 122223445555544333333322 111 123456677777777 89999999987765444
No 342
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.82 E-value=0.025 Score=40.62 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=18.4
Q ss_pred EEecCCCCCChhhHHHHHHHHH
Q 030973 35 AVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~l 56 (168)
.++.+.+|+||||+|..||..+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 4557889999999999998765
No 343
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.75 E-value=0.043 Score=42.08 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=30.7
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
+...++++..|+||||+...|...+-. ...+++.|+-
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~-~~~~iv~iEd 163 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPP-EDERIVTIED 163 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHT-TTSEEEEEES
T ss_pred ceEEEEECCCccccchHHHHHhhhccc-cccceEEecc
Confidence 455556888999999999999988887 5689999984
No 344
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.74 E-value=0.075 Score=40.37 Aligned_cols=40 Identities=28% Similarity=0.354 Sum_probs=28.6
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.++-+.+ |+.+|+||||.+..||+.|-. ..+|=-+++++.
T Consensus 47 nmP~lii-sGpPG~GKTTsi~~LAr~LLG-~~~ke~vLELNA 86 (333)
T KOG0991|consen 47 NMPNLII-SGPPGTGKTTSILCLARELLG-DSYKEAVLELNA 86 (333)
T ss_pred CCCceEe-eCCCCCchhhHHHHHHHHHhC-hhhhhHhhhccC
Confidence 3555544 889999999999999999855 445545555543
No 345
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=94.70 E-value=0.048 Score=46.17 Aligned_cols=72 Identities=24% Similarity=0.248 Sum_probs=51.4
Q ss_pred CCeEEEEec---CCCCCChhhHHHHHHHHHH-HhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeee
Q 030973 30 VKDVIAVAS---GKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCM 105 (168)
Q Consensus 30 ~~~vI~v~s---~kgG~GKTt~a~~LA~~la-~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (168)
.+|.|.|++ ..-|+||||++..|+..|. + .|+++++- .+.||+.=.||+.....-.-...+.|.+..|+++.
T Consensus 67 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~-lgk~~~~~---lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfT 142 (625)
T PTZ00386 67 NGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAH-LHRKTFAC---IRQPSQGPTFGIKGGAAGGGYSQVIPMEDFNLHGT 142 (625)
T ss_pred CCcEEEEeecCCCCCCCCccchhhhhHHHHHHH-hCcceEEE---EecCCcCCcCCcccccCCCccccccchhhcccccc
Confidence 477777765 4569999999999999999 7 89998875 45567777788877654444445555555555443
No 346
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.70 E-value=0.041 Score=45.49 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=30.1
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeCCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADV 71 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~D~ 71 (168)
.++.+..|+|||+++..+|..+.+ . +.+|++++++.
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~~~ 170 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITSEK 170 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEHHH
Confidence 455678899999999999999887 4 67999998753
No 347
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=94.69 E-value=0.07 Score=41.88 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=37.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV 76 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l 76 (168)
++.++++++ .-.|||+++.-|..++-+ .++++|.+++||++|..
T Consensus 99 gp~v~vvGg-sq~Gkts~~~tL~syalk-~~~~pl~~nlDP~Qp~~ 142 (424)
T COG5623 99 GPTVMVVGG-SQNGKTSFCFTLISYALK-LGKKPLFTNLDPSQPGN 142 (424)
T ss_pred CCEEEEECC-CcCCceeHHHHHHHHHHH-hcCCceEEecCCCCccc
Confidence 667777654 458999999999999888 89999999999998653
No 348
>PRK07261 topology modulation protein; Provisional
Probab=94.67 E-value=0.033 Score=39.93 Aligned_cols=22 Identities=45% Similarity=0.537 Sum_probs=17.4
Q ss_pred EEEecCCCCCChhhHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~l 56 (168)
|++ .+.+|+||||+|..|+..+
T Consensus 3 i~i-~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAI-IGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEE-EcCCCCCHHHHHHHHHHHh
Confidence 444 4689999999999987654
No 349
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.66 E-value=0.32 Score=43.64 Aligned_cols=38 Identities=29% Similarity=0.232 Sum_probs=32.6
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
..++.+..|+|||++|..||..+.. .+.+++.+|+...
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~l~~-~~~~~i~~d~s~~ 634 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFLFD-DEDAMVRIDMSEY 634 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcC-CCCcEEEEechhh
Confidence 3445688999999999999999988 8889999999764
No 350
>PRK13948 shikimate kinase; Provisional
Probab=94.64 E-value=0.035 Score=40.37 Aligned_cols=33 Identities=36% Similarity=0.460 Sum_probs=24.2
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|. ..+-.|+||||++..||..|. .+ +||+|.
T Consensus 11 ~~I~-LiG~~GsGKSTvg~~La~~lg----~~--~iD~D~ 43 (182)
T PRK13948 11 TWVA-LAGFMGTGKSRIGWELSRALM----LH--FIDTDR 43 (182)
T ss_pred CEEE-EECCCCCCHHHHHHHHHHHcC----CC--EEECCH
Confidence 3444 467889999999988887763 33 469995
No 351
>PRK03839 putative kinase; Provisional
Probab=94.64 E-value=0.039 Score=39.62 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=18.3
Q ss_pred EEecCCCCCChhhHHHHHHHHHH
Q 030973 35 AVASGKGGVGKSTTAVNLAVALA 57 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la 57 (168)
.++.+.+|+||||++..||..+.
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 34458899999999988888763
No 352
>PRK07429 phosphoribulokinase; Provisional
Probab=94.59 E-value=0.059 Score=42.82 Aligned_cols=36 Identities=31% Similarity=0.317 Sum_probs=25.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
.-+|++ .+..|+||||++..|+..+.. .+..|+..|
T Consensus 8 ~~IIgI-~G~SGSGKSTla~~L~~ll~~-~~~~vi~~D 43 (327)
T PRK07429 8 PVLLGV-AGDSGCGKTTFLRGLADLLGE-ELVTVICTD 43 (327)
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHhHhcc-CceEEEEec
Confidence 345555 688999999999999988765 433444443
No 353
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.59 E-value=0.056 Score=38.77 Aligned_cols=33 Identities=24% Similarity=0.196 Sum_probs=26.7
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.++.+..|+|||++|.+++.. .+.+++++....
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~ 34 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAE 34 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccC
Confidence 466889999999999998754 467999997664
No 354
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.58 E-value=0.064 Score=40.63 Aligned_cols=37 Identities=30% Similarity=0.389 Sum_probs=30.7
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHh----CCCeEEEEeCCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASK----CQLKVGLLDADV 71 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~----~g~rVlliD~D~ 71 (168)
.+.-+.+|+||||+-..+|+.++.- .++||.+||.-.
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers 180 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS 180 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc
Confidence 3445789999999999999999973 479999999754
No 355
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=94.54 E-value=0.067 Score=42.12 Aligned_cols=33 Identities=30% Similarity=0.410 Sum_probs=24.9
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+.++++..|+|||++|..||..+ + +.+|.+|.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~----~--~~iis~Ds 37 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRL----N--GEIISADS 37 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhC----C--CcEEeccc
Confidence 355667888999999999998765 2 35677775
No 356
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.52 E-value=0.081 Score=35.11 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=25.5
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHh-CCCeEEEE
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASK-CQLKVGLL 67 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~-~g~rVlli 67 (168)
.++.+..|+|||+++..++..+... ..++++++
T Consensus 3 ~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~ 36 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILELLDSLKGGQVLVL 36 (144)
T ss_pred EEEECCCCCchhHHHHHHHHHHHhcccCCCEEEE
Confidence 3557888999999999999999862 23566666
No 357
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.48 E-value=0.052 Score=39.04 Aligned_cols=19 Identities=47% Similarity=0.686 Sum_probs=16.2
Q ss_pred EEEecCCCCCChhhHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLA 53 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA 53 (168)
|++ .+.+|+||||+|-.|+
T Consensus 3 I~I-TGTPGvGKTT~~~~L~ 21 (180)
T COG1936 3 IAI-TGTPGVGKTTVCKLLR 21 (180)
T ss_pred EEE-eCCCCCchHHHHHHHH
Confidence 455 6789999999999888
No 358
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=94.44 E-value=0.051 Score=48.09 Aligned_cols=41 Identities=27% Similarity=0.161 Sum_probs=33.3
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV 76 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l 76 (168)
.++.+..|+|||+++..++..+.. .|.+|++||-.-....+
T Consensus 433 ~~I~G~tGsGKS~~~~~l~~~~~~-~g~~v~iiD~~~sy~~l 473 (797)
T TIGR02746 433 IAVVGGSGAGKSFFMQELIVDNLS-RGGKVWVIDVGRSYKKL 473 (797)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHH
Confidence 344678899999999999988888 89999999987644333
No 359
>PRK13764 ATPase; Provisional
Probab=94.43 E-value=0.066 Score=45.86 Aligned_cols=36 Identities=33% Similarity=0.324 Sum_probs=29.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
.+-| ++++..|+||||++.+|+..+.. .++.|+-++
T Consensus 257 ~~~I-LIsG~TGSGKTTll~AL~~~i~~-~~riV~TiE 292 (602)
T PRK13764 257 AEGI-LIAGAPGAGKSTFAQALAEFYAD-MGKIVKTME 292 (602)
T ss_pred CCEE-EEECCCCCCHHHHHHHHHHHHhh-CCCEEEEEC
Confidence 3444 56889999999999999999988 888777776
No 360
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=94.41 E-value=0.088 Score=43.29 Aligned_cols=43 Identities=19% Similarity=0.367 Sum_probs=36.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..-+.+..+.+|.|||++|.|+|..+|...+++|.++.+....
T Consensus 195 ~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~~ 237 (435)
T COG0305 195 PGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMSE 237 (435)
T ss_pred cCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccCCH
Confidence 4446677999999999999999999998567779999888744
No 361
>PRK13975 thymidylate kinase; Provisional
Probab=94.28 E-value=0.058 Score=39.14 Aligned_cols=26 Identities=38% Similarity=0.391 Sum_probs=21.1
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHH
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
.+.++-+-.|+||||++..||..+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34555788899999999999998853
No 362
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=94.23 E-value=0.042 Score=38.59 Aligned_cols=30 Identities=40% Similarity=0.567 Sum_probs=25.2
Q ss_pred CCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973 39 GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (168)
Q Consensus 39 ~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~ 74 (168)
+-.|+||||++..||..|.. -.||.|--+|
T Consensus 2 GVsG~GKStvg~~lA~~lg~------~fidGDdlHp 31 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGA------KFIDGDDLHP 31 (161)
T ss_pred CCCccCHHHHHHHHHHHcCC------ceecccccCC
Confidence 45799999999999998865 5799998775
No 363
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.20 E-value=0.063 Score=38.86 Aligned_cols=19 Identities=53% Similarity=0.562 Sum_probs=16.5
Q ss_pred cCCCCCChhhHHHHHHHHH
Q 030973 38 SGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 38 s~kgG~GKTt~a~~LA~~l 56 (168)
-+.+|+||||.|..||..+
T Consensus 6 lG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 6 LGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4788999999999998874
No 364
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.17 E-value=0.048 Score=41.85 Aligned_cols=43 Identities=30% Similarity=0.301 Sum_probs=29.4
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCC-CeEEEEeCCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVYG 73 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g-~rVlliD~D~~~ 73 (168)
..++|++ .+-||+||||+|..++........ ..|+-|++....
T Consensus 18 ~~~~v~I-~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~ 61 (287)
T PF00931_consen 18 EVRVVAI-VGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNP 61 (287)
T ss_dssp SSEEEEE-EESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-S
T ss_pred CeEEEEE-EcCCcCCcceeeeeccccccccccccccccccccccc
Confidence 3566666 678899999999999987553122 356777776543
No 365
>PRK02496 adk adenylate kinase; Provisional
Probab=94.16 E-value=0.069 Score=38.47 Aligned_cols=23 Identities=43% Similarity=0.481 Sum_probs=18.4
Q ss_pred EEEEecCCCCCChhhHHHHHHHHH
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
.|.| .+.+|+||||+|..||..+
T Consensus 3 ~i~i-~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIF-LGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHh
Confidence 3445 5679999999999998766
No 366
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.16 E-value=0.074 Score=41.36 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=26.3
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCC----eEEEEeC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQL----KVGLLDA 69 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~----rVlliD~ 69 (168)
.++.+.+|+|||++|..+|..+.+ .|. .++.+++
T Consensus 61 vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 61 MSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR 98 (284)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH
Confidence 344578899999999999999987 664 4666664
No 367
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.15 E-value=0.061 Score=39.72 Aligned_cols=35 Identities=37% Similarity=0.374 Sum_probs=24.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+.+|++| ++.|+||||++--+ ++ .| +.+||+|-..
T Consensus 2 ~~iIglT-G~igsGKStva~~~----~~-~G--~~vidaD~v~ 36 (201)
T COG0237 2 MLIIGLT-GGIGSGKSTVAKIL----AE-LG--FPVIDADDVA 36 (201)
T ss_pred ceEEEEe-cCCCCCHHHHHHHH----HH-cC--CeEEEccHHH
Confidence 5678885 68899999987544 34 45 4567888744
No 368
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.11 E-value=0.049 Score=42.16 Aligned_cols=33 Identities=39% Similarity=0.433 Sum_probs=24.0
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
|++ .+..|+||||++..|+..+.. .+..|+..|
T Consensus 2 igI-~G~sGsGKSTl~~~L~~ll~~-~~~~vi~~D 34 (273)
T cd02026 2 IGV-AGDSGCGKSTFLRRLTSLFGS-DLVTVICLD 34 (273)
T ss_pred EEE-ECCCCCCHHHHHHHHHHhhCC-CceEEEECc
Confidence 444 578999999999999988865 454444444
No 369
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=94.09 E-value=0.06 Score=47.90 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=33.7
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV 76 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l 76 (168)
++.+..|+|||+++..+...+.. .|.+|+++|.+-....+
T Consensus 442 ~I~G~sGsGKS~l~~~l~~~~~~-~g~~vviiD~g~sy~~l 481 (829)
T TIGR03783 442 FILGPSGSGKSFFTNHLVRQYYE-QGTHILLVDTGNSYQGL 481 (829)
T ss_pred EEECCCCCCHHHHHHHHHHHHHh-cCCEEEEECCCccHHHH
Confidence 45688999999999999999988 99999999997544344
No 370
>PRK07413 hypothetical protein; Validated
Probab=94.08 E-value=0.35 Score=39.22 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=29.5
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCC------eEEEEeCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQL------KVGLLDADV 71 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~------rVlliD~D~ 71 (168)
.|-|+. ..|=||||.|..+|...+- .|. ||++|=+=-
T Consensus 21 li~Vyt-G~GKGKTTAAlGlalRA~G-~G~~~~~~~rV~ivQFlK 63 (382)
T PRK07413 21 QLHVYD-GEGKGKSQAALGVVLRTIG-LGICEKRQTRVLLLRFLK 63 (382)
T ss_pred eEEEEe-CCCCCHHHHHHHHHHHHhc-CCCCcCCCCeEEEEEEEc
Confidence 444443 4577999999999999999 998 999997643
No 371
>PRK00625 shikimate kinase; Provisional
Probab=94.05 E-value=0.049 Score=39.24 Aligned_cols=31 Identities=32% Similarity=0.372 Sum_probs=22.7
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+..+-.|+||||++..||..+. .+ .||+|.
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~----~~--~id~D~ 33 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLS----LP--FFDTDD 33 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC----CC--EEEhhH
Confidence 34467899999999999987763 33 466664
No 372
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=94.03 E-value=0.045 Score=43.87 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=46.2
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPE 87 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~ 87 (168)
..+.+-+|.||||++.+|-.+|.. .|-...-+|.|--+.++..-+|..++..
T Consensus 53 vw~tglsgagkttis~ale~~l~~-~gipcy~ldgdnirhgl~knlgfs~edr 104 (627)
T KOG4238|consen 53 VWLTGLSGAGKTTISFALEEYLVS-HGIPCYSLDGDNIRHGLNKNLGFSPEDR 104 (627)
T ss_pred EEeeccCCCCcceeehHHHHHHHh-cCCcccccCcchhhhhhhhccCCCchhH
Confidence 345678899999999999999999 9999999999999889999999887653
No 373
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.11 Score=41.22 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=33.0
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHH---hCCCeEEEEeCCCCCCCcccccc
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALAS---KCQLKVGLLDADVYGPSVPMMMK 81 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~---~~g~rVlliD~D~~~~~l~~~~~ 81 (168)
.+...-+.+|.|||++|.+||..|+- .+..+..+|+.+... -.+.-|+
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshs-LFSKWFs 228 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHS-LFSKWFS 228 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhH-HHHHHHh
Confidence 34444678899999999999999974 134577888887532 3333343
No 374
>PRK14531 adenylate kinase; Provisional
Probab=93.98 E-value=0.069 Score=38.58 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=18.7
Q ss_pred EEecCCCCCChhhHHHHHHHHHH
Q 030973 35 AVASGKGGVGKSTTAVNLAVALA 57 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la 57 (168)
.++.+.+|+||||++..||..+.
T Consensus 5 i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 5 LLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 34468899999999999988764
No 375
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.98 E-value=0.049 Score=40.67 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=30.6
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHh-CCCeEEEEeCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDADV 71 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~-~g~rVlliD~D~ 71 (168)
..+ +..+..|+|||.+..+++..+.+. .+.||++++++.
T Consensus 35 ~~l-~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~ 74 (219)
T PF00308_consen 35 NPL-FLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE 74 (219)
T ss_dssp SEE-EEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH
T ss_pred Cce-EEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH
Confidence 344 557788999999999999988762 478999999865
No 376
>PRK14528 adenylate kinase; Provisional
Probab=93.94 E-value=0.075 Score=38.57 Aligned_cols=24 Identities=38% Similarity=0.389 Sum_probs=18.5
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHH
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+.|.+ .+.+|+||||+|..||..+
T Consensus 2 ~~i~i-~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIF-MGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEE-ECCCCCCHHHHHHHHHHHh
Confidence 44444 6779999999999887665
No 377
>PRK14527 adenylate kinase; Provisional
Probab=93.92 E-value=0.076 Score=38.56 Aligned_cols=27 Identities=37% Similarity=0.457 Sum_probs=20.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
+++|.+ .+.+|+||||+|..||..+..
T Consensus 6 ~~~i~i-~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 6 NKVVIF-LGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHhCC
Confidence 455555 567999999999999876643
No 378
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=93.91 E-value=0.06 Score=48.06 Aligned_cols=45 Identities=18% Similarity=0.062 Sum_probs=35.5
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCccccc
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMM 80 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~ 80 (168)
.++.+..|+|||+++..++..+.. .|.+|.++|-+-....+...+
T Consensus 452 ~~I~G~sGsGKS~l~k~l~~~~~~-~g~~viiiD~~~sy~~l~~~l 496 (844)
T PRK13721 452 MAVCGTSGAGKTGLIQPLIRSVLD-SGGFAVVFDMGDGYKSLCENM 496 (844)
T ss_pred EEEEcCCCCCHHHHHHHHHHhhhc-cCCEEEEEeCCCCHHHHHHHc
Confidence 444688999999999999988888 899999999987543344444
No 379
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.88 E-value=0.1 Score=45.39 Aligned_cols=43 Identities=23% Similarity=0.190 Sum_probs=34.5
Q ss_pred cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.+...+.|.+.++-+|-||||+|.-+|+ +.|++|+=|.+--.+
T Consensus 321 s~RP~kKilLL~GppGlGKTTLAHViAk----qaGYsVvEINASDeR 363 (877)
T KOG1969|consen 321 SKRPPKKILLLCGPPGLGKTTLAHVIAK----QAGYSVVEINASDER 363 (877)
T ss_pred cCCCccceEEeecCCCCChhHHHHHHHH----hcCceEEEecccccc
Confidence 4556788999999999999999877665 379999988886544
No 380
>PRK13946 shikimate kinase; Provisional
Probab=93.85 E-value=0.051 Score=39.34 Aligned_cols=33 Identities=42% Similarity=0.567 Sum_probs=24.5
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.|.+ .+..|+||||++..||..|. .+ .+|.|.
T Consensus 11 ~~I~l-~G~~GsGKsti~~~LA~~Lg----~~--~id~D~ 43 (184)
T PRK13946 11 RTVVL-VGLMGAGKSTVGRRLATMLG----LP--FLDADT 43 (184)
T ss_pred CeEEE-ECCCCCCHHHHHHHHHHHcC----CC--eECcCH
Confidence 44444 57789999999999988773 33 677775
No 381
>PRK04182 cytidylate kinase; Provisional
Probab=93.84 E-value=0.063 Score=38.18 Aligned_cols=23 Identities=48% Similarity=0.492 Sum_probs=18.8
Q ss_pred EEEecCCCCCChhhHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+.++++..|+||||++..||..+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 34557899999999999998765
No 382
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.83 E-value=0.066 Score=38.31 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=20.8
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
+.++.+..|+||||++..|+..+..
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4566789999999999999888754
No 383
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=93.83 E-value=0.034 Score=39.24 Aligned_cols=25 Identities=40% Similarity=0.392 Sum_probs=21.9
Q ss_pred CCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 41 GGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 41 gG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|+||||++..||..|.. -++|+|.
T Consensus 1 ~GsGKStvg~~lA~~L~~------~fiD~D~ 25 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGR------PFIDLDD 25 (158)
T ss_dssp TTSSHHHHHHHHHHHHTS------EEEEHHH
T ss_pred CCCcHHHHHHHHHHHhCC------CccccCH
Confidence 499999999999999866 6789886
No 384
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=93.81 E-value=0.14 Score=41.15 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=33.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli 67 (168)
++.+.+++...|+|||+++.+|++.|.+ +|.||-++
T Consensus 2 ~~~l~l~p~~~~~G~tsi~lgLl~~l~~-k~~kva~~ 37 (354)
T COG0857 2 SRTLLLIPTETGVGKTSISLGLLRALEQ-KGLKVAYF 37 (354)
T ss_pred cceEEEeccCCCccHHHHHHHHHHHHHH-cCceeEEE
Confidence 7889999999999999999999999999 99998875
No 385
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.80 E-value=0.092 Score=42.26 Aligned_cols=50 Identities=22% Similarity=0.198 Sum_probs=35.9
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC------C-CCCCcccccccC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD------V-YGPSVPMMMKID 83 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D------~-~~~~l~~~~~~~ 83 (168)
...|+++.||+|||++...+-..+.. .+++|+++-.- . .+..+|..|++.
T Consensus 23 ~~~fv~G~~GtGKs~l~~~i~~~~~~-~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~ 79 (364)
T PF05970_consen 23 LNFFVTGPAGTGKSFLIKAIIDYLRS-RGKKVLVTAPTGIAAFNIPGGRTIHSFFGIP 79 (364)
T ss_pred cEEEEEcCCCCChhHHHHHHHHHhcc-ccceEEEecchHHHHHhccCCcchHHhcCcc
Confidence 45677999999999999999998877 77777765321 1 234556666644
No 386
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.75 E-value=0.052 Score=40.83 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=18.8
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
..+.+ ++.+|+||||+|.-+|..+..
T Consensus 51 ~h~lf-~GPPG~GKTTLA~IIA~e~~~ 76 (233)
T PF05496_consen 51 DHMLF-YGPPGLGKTTLARIIANELGV 76 (233)
T ss_dssp -EEEE-ESSTTSSHHHHHHHHHHHCT-
T ss_pred ceEEE-ECCCccchhHHHHHHHhccCC
Confidence 34444 678899999999888876643
No 387
>PRK13949 shikimate kinase; Provisional
Probab=93.72 E-value=0.068 Score=38.26 Aligned_cols=32 Identities=34% Similarity=0.424 Sum_probs=23.6
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|.++ +..|+||||++..||..+.. -.+|+|.
T Consensus 3 ~I~li-G~~GsGKstl~~~La~~l~~------~~id~D~ 34 (169)
T PRK13949 3 RIFLV-GYMGAGKTTLGKALARELGL------SFIDLDF 34 (169)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHcCC------CeecccH
Confidence 45554 67899999999998887743 4677774
No 388
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=93.71 E-value=0.16 Score=37.23 Aligned_cols=39 Identities=28% Similarity=0.398 Sum_probs=33.7
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..|.| .+..|+|||++.-.+-..|.. . +++.+|-.|...
T Consensus 14 ~~i~v-~Gp~GSGKTaLie~~~~~L~~-~-~~~aVI~~Di~t 52 (202)
T COG0378 14 LRIGV-GGPPGSGKTALIEKTLRALKD-E-YKIAVITGDIYT 52 (202)
T ss_pred EEEEe-cCCCCcCHHHHHHHHHHHHHh-h-CCeEEEeceeec
Confidence 56666 678899999999999999988 4 999999999865
No 389
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.71 E-value=0.16 Score=41.04 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=30.9
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeCCCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADVY 72 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~D~~ 72 (168)
.++++.+|+|||+++..++..+.+ . +.+++.|++...
T Consensus 58 ~lI~G~~GtGKT~l~~~v~~~l~~-~~~~~~~v~in~~~~ 96 (394)
T PRK00411 58 VLIYGPPGTGKTTTVKKVFEELEE-IAVKVVYVYINCQID 96 (394)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEECCcC
Confidence 467899999999999999999987 5 477888888653
No 390
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=93.71 E-value=0.11 Score=38.03 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=28.5
Q ss_pred ecCCCCCChhhHHHHHHHHHHHh---CCCeEEEEeCCCCCCCccccccc
Q 030973 37 ASGKGGVGKSTTAVNLAVALASK---CQLKVGLLDADVYGPSVPMMMKI 82 (168)
Q Consensus 37 ~s~kgG~GKTt~a~~LA~~la~~---~g~rVlliD~D~~~~~l~~~~~~ 82 (168)
+.+..|+|||++..+++..++.. ...++.++|..- ..+..+-+.
T Consensus 43 i~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k~--~~l~~~~~~ 89 (205)
T PF01580_consen 43 IAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPKG--SDLAPLADL 89 (205)
T ss_dssp EE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTS--SCCGGGTT-
T ss_pred EEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCCc--cccchhhhh
Confidence 35788899999999999999872 256777777753 244444433
No 391
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.65 E-value=0.12 Score=30.79 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=20.5
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
+.+++++.|+||||+--++-..|--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5666899999999999888877743
No 392
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.64 E-value=0.33 Score=43.32 Aligned_cols=38 Identities=29% Similarity=0.274 Sum_probs=30.8
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
..++.+..|+|||++|..||..+-. .+.+++-+|+...
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~-~~~~~~~~d~s~~ 578 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFG-SEDAMIRLDMSEY 578 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcC-CccceEEEEchhc
Confidence 3456888999999999999999876 6678888887653
No 393
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=93.64 E-value=0.075 Score=37.74 Aligned_cols=29 Identities=38% Similarity=0.543 Sum_probs=23.0
Q ss_pred CCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 39 GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 39 ~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+.+|+||||++..|+..+.. ..+|.|...
T Consensus 2 G~sGsGKSTla~~la~~l~~------~~~~~d~~~ 30 (163)
T PRK11545 2 GVSGSGKSAVASEVAHQLHA------AFLDGDFLH 30 (163)
T ss_pred CCCCCcHHHHHHHHHHHhCC------eEEeCccCC
Confidence 56899999999999887733 677888754
No 394
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.62 E-value=0.086 Score=40.34 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=20.8
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQ 61 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g 61 (168)
++.+.+|+||||+|..+|..+.+ .|
T Consensus 46 ll~GppGtGKTtlA~~ia~~l~~-~~ 70 (261)
T TIGR02881 46 IFKGNPGTGKTTVARILGKLFKE-MN 70 (261)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHh-cC
Confidence 34688999999999999998876 44
No 395
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.61 E-value=0.39 Score=40.31 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=21.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
.+.+.| ++..|+||||+|..+|..+--
T Consensus 35 ~ha~Lf-~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 35 PQSILL-VGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred CceEEE-ECCCCccHHHHHHHHHHHHcC
Confidence 344555 678899999999999998754
No 396
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=93.60 E-value=0.15 Score=37.58 Aligned_cols=32 Identities=41% Similarity=0.368 Sum_probs=23.4
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
++|++ .+..|+||||++..|+ . .|. .+||+|.
T Consensus 2 ~~igi-tG~igsGKst~~~~l~----~-~g~--~vid~D~ 33 (200)
T PRK14734 2 LRIGL-TGGIGSGKSTVADLLS----S-EGF--LIVDADQ 33 (200)
T ss_pred eEEEE-ECCCCCCHHHHHHHHH----H-CCC--eEEeCcH
Confidence 45666 5677999999988887 3 565 4688884
No 397
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.59 E-value=0.076 Score=37.44 Aligned_cols=23 Identities=48% Similarity=0.494 Sum_probs=18.0
Q ss_pred EEEEecCCCCCChhhHHHHHHHHH
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
-|.| .+.+|+||||++..||..+
T Consensus 9 NILv-tGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 9 NILV-TGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CEEE-eCCCCCCchhHHHHHHHHh
Confidence 3555 5789999999999999543
No 398
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=93.58 E-value=0.094 Score=37.24 Aligned_cols=38 Identities=32% Similarity=0.407 Sum_probs=29.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~ 74 (168)
.+-+.++-+..|+||||++..|+..|.. =.+|+|-.+|
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~------~F~dgDd~Hp 48 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGL------KFIDGDDLHP 48 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCC------cccccccCCC
Confidence 4534555678899999999999988865 3689998764
No 399
>CHL00181 cbbX CbbX; Provisional
Probab=93.57 E-value=0.099 Score=40.75 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=25.8
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCC----eEEEEeC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQL----KVGLLDA 69 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~----rVlliD~ 69 (168)
.++.+.+|+||||+|..+|..+.. .|. .++.++.
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~ 99 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTR 99 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecH
Confidence 444789999999999999999876 554 3555553
No 400
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.57 E-value=0.16 Score=37.72 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=24.3
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCC--eEEEE
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQL--KVGLL 67 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~--rVlli 67 (168)
+.+..+..|+|||.+|...|..+.. .|+ |++++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~v~-~g~~~kiii~ 55 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALELVK-EGEYDKIIIT 55 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHHHH-TTS-SEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHH-hCCCcEEEEE
Confidence 5566789999999999999998877 443 55555
No 401
>PRK13695 putative NTPase; Provisional
Probab=93.53 E-value=0.18 Score=36.02 Aligned_cols=28 Identities=39% Similarity=0.541 Sum_probs=23.7
Q ss_pred ecCCCCCChhhHHHHHHHHHHHhCCCeEE
Q 030973 37 ASGKGGVGKSTTAVNLAVALASKCQLKVG 65 (168)
Q Consensus 37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVl 65 (168)
..+.+|+||||++..++..+.. .|.++.
T Consensus 5 ltG~~G~GKTTll~~i~~~l~~-~G~~~~ 32 (174)
T PRK13695 5 ITGPPGVGKTTLVLKIAELLKE-EGYKVG 32 (174)
T ss_pred EECCCCCCHHHHHHHHHHHHHH-CCCeEE
Confidence 3577899999999999998887 788865
No 402
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=93.53 E-value=0.11 Score=45.87 Aligned_cols=37 Identities=22% Similarity=0.115 Sum_probs=30.9
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCC-eEEEEeCCCCC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQL-KVGLLDADVYG 73 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~-rVlliD~D~~~ 73 (168)
++.++.|+|||+++..++..+.+ .|. +|++||-+-..
T Consensus 438 ~I~G~tGsGKS~~~~~l~~~~~~-~~~~~v~iiD~~~~~ 475 (785)
T TIGR00929 438 LIFGPTGSGKTTLLNFLLAQMQK-YGGMTIFAFDKDRGM 475 (785)
T ss_pred EEECCCCCCHHHHHHHHHHHhhc-cCCCeEEEEeCCCCh
Confidence 44688899999999999988888 776 99999987544
No 403
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=93.53 E-value=0.089 Score=38.57 Aligned_cols=33 Identities=39% Similarity=0.519 Sum_probs=23.2
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.|++ .+..|+||||++..|+..+ |..| +|+|.-
T Consensus 3 ~i~i-tG~~gsGKst~~~~l~~~~----g~~~--i~~D~~ 35 (195)
T PRK14730 3 RIGL-TGGIASGKSTVGNYLAQQK----GIPI--LDADIY 35 (195)
T ss_pred EEEE-ECCCCCCHHHHHHHHHHhh----CCeE--eeCcHH
Confidence 4555 6788999999988877532 5444 588863
No 404
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=93.52 E-value=0.096 Score=42.07 Aligned_cols=39 Identities=21% Similarity=0.066 Sum_probs=27.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHh---CCCeEEEEeC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASK---CQLKVGLLDA 69 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~---~g~rVlliD~ 69 (168)
.+.|....+.+|+||||+|..|+..+.+- -.-+...+.+
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 34555567888999999999999999761 1225555555
No 405
>PRK10536 hypothetical protein; Provisional
Probab=93.46 E-value=0.15 Score=39.21 Aligned_cols=125 Identities=10% Similarity=0.100 Sum_probs=63.2
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc---------------------cC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK---------------------DM 92 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~---------------------~~ 92 (168)
+.+..+..|+|||++|..+|...-.....+.++| ..|.- .....+|.-+.. +.+ ..
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI-~RP~v-~~ge~LGfLPG~-~~eK~~p~~~pi~D~L~~~~~~~~~~ 152 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV-TRPVL-QADEDLGFLPGD-IAEKFAPYFRPVYDVLVRRLGASFMQ 152 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE-eCCCC-CchhhhCcCCCC-HHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 6677789999999999999996442134444444 23322 223444433321 111 00
Q ss_pred ceeecccCCeeeeecCccCCCCCCc-----ccCchhHHHHHHHHHHhhcCCCCcEEE------EeCCCCCCHHHHHHHhh
Q 030973 93 KMVPIENYGVKCMSMGFLVPSSSPV-----VWRGPMVMSALRKMSREVDWGNLDILV------IDMPPGTGDAQLTTTQT 161 (168)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~l~~l~~~l~~~~yD~Ii------iD~p~~~~~~~~~~~~~ 161 (168)
.........+.+.|..++-...-.. ..........+..++..+. +.--+|| ||.|.+-+.....+.+.
T Consensus 153 ~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g-~~sk~v~~GD~~QiD~p~~~~sGL~~~~~~ 231 (262)
T PRK10536 153 YCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLG-ENVTVIVNGDITQCDLPRGVKSGLSDALER 231 (262)
T ss_pred HHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcC-CCCEEEEeCChhhccCCCCCCCCHHHHHHH
Confidence 0111122345555554332222111 1112234567777777776 6666666 58876544444444444
Q ss_pred c
Q 030973 162 L 162 (168)
Q Consensus 162 ~ 162 (168)
+
T Consensus 232 ~ 232 (262)
T PRK10536 232 F 232 (262)
T ss_pred h
Confidence 4
No 406
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=93.46 E-value=0.096 Score=38.28 Aligned_cols=34 Identities=35% Similarity=0.362 Sum_probs=24.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
|.+|++ .+.-|+||||++..|+. .|. -+||+|.-
T Consensus 2 ~~~i~l-tG~~gsGKst~~~~l~~-----~g~--~~i~~D~~ 35 (194)
T PRK00081 2 MLIIGL-TGGIGSGKSTVANLFAE-----LGA--PVIDADAI 35 (194)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHH-----cCC--EEEEecHH
Confidence 455666 56789999999887764 353 56888873
No 407
>PLN03025 replication factor C subunit; Provisional
Probab=93.46 E-value=0.11 Score=40.98 Aligned_cols=35 Identities=31% Similarity=0.455 Sum_probs=26.1
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
++.+..|+||||++..+|..+.. .+.+..+++.+.
T Consensus 38 ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~eln~ 72 (319)
T PLN03025 38 ILSGPPGTGKTTSILALAHELLG-PNYKEAVLELNA 72 (319)
T ss_pred EEECCCCCCHHHHHHHHHHHHhc-ccCccceeeecc
Confidence 45788999999999999999865 554444555544
No 408
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=93.45 E-value=0.21 Score=37.06 Aligned_cols=38 Identities=32% Similarity=0.316 Sum_probs=30.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
++-|+| =+--|+||||.+..|+..|.+ .|.+|++.=--
T Consensus 3 g~fI~i-EGiDGaGKTT~~~~L~~~l~~-~g~~v~~trEP 40 (208)
T COG0125 3 GMFIVI-EGIDGAGKTTQAELLKERLEE-RGIKVVLTREP 40 (208)
T ss_pred ceEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCC
Confidence 344555 667799999999999999999 99988887553
No 409
>PRK13976 thymidylate kinase; Provisional
Probab=93.45 E-value=0.16 Score=37.69 Aligned_cols=32 Identities=31% Similarity=0.248 Sum_probs=26.1
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhC-C-CeEEEE
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKC-Q-LKVGLL 67 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~-g-~rVlli 67 (168)
.++-+-.|+||||.+..|+..|.. . | .+|.+.
T Consensus 3 Iv~EGiDGsGKsTq~~~L~~~L~~-~~g~~~v~~~ 36 (209)
T PRK13976 3 ITFEGIDGSGKTTQSRLLAEYLSD-IYGENNVVLT 36 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-hcCCcceEEe
Confidence 345678899999999999999998 6 5 577655
No 410
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=93.36 E-value=0.1 Score=46.53 Aligned_cols=40 Identities=30% Similarity=0.203 Sum_probs=34.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+-.+++-+-+|.||||+.+.|-+.|.. .|++||+.-.-.
T Consensus 684 aedy~LI~GMPGTGKTTtI~~LIkiL~~-~gkkVLLtsyTh 723 (1100)
T KOG1805|consen 684 AEDYALILGMPGTGKTTTISLLIKILVA-LGKKVLLTSYTH 723 (1100)
T ss_pred ccchheeecCCCCCchhhHHHHHHHHHH-cCCeEEEEehhh
Confidence 4456677789999999999999999999 999999987643
No 411
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=93.33 E-value=0.16 Score=46.93 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=27.9
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
..++|+++ +.||+||||+|..++..+.. .-.-.+.+|
T Consensus 206 ~~~vvgI~-G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~ 242 (1153)
T PLN03210 206 EVRMVGIW-GSSGIGKTTIARALFSRLSR-QFQSSVFID 242 (1153)
T ss_pred ceEEEEEE-cCCCCchHHHHHHHHHHHhh-cCCeEEEee
Confidence 47788775 78999999999999988877 433334454
No 412
>PRK14532 adenylate kinase; Provisional
Probab=93.31 E-value=0.078 Score=38.28 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=17.2
Q ss_pred EecCCCCCChhhHHHHHHHHH
Q 030973 36 VASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~l 56 (168)
++.+.+|+||||+|..||..+
T Consensus 4 ~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 4 ILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEECCCCCCHHHHHHHHHHHc
Confidence 446899999999999988644
No 413
>PRK14530 adenylate kinase; Provisional
Probab=93.29 E-value=0.098 Score=38.75 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=18.7
Q ss_pred EEEEecCCCCCChhhHHHHHHHHH
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
.|.+ -+.+|+||||++..||..+
T Consensus 5 ~I~i-~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILL-LGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHh
Confidence 4555 5788999999999998766
No 414
>COG3911 Predicted ATPase [General function prediction only]
Probab=93.29 E-value=0.11 Score=36.65 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=18.3
Q ss_pred EEEEecCCCCCChhhHHHHHHH
Q 030973 33 VIAVASGKGGVGKSTTAVNLAV 54 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~ 54 (168)
.+.|.++.+|.||||+-+.|+.
T Consensus 10 ~~fIltGgpGaGKTtLL~aLa~ 31 (183)
T COG3911 10 KRFILTGGPGAGKTTLLAALAR 31 (183)
T ss_pred eEEEEeCCCCCcHHHHHHHHHH
Confidence 4677789999999999887764
No 415
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=93.27 E-value=0.096 Score=43.46 Aligned_cols=37 Identities=30% Similarity=0.382 Sum_probs=27.6
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+.+.++++-+|+||||++..||..+.- +.+|..|...
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg~-----~~ii~tD~iR 291 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLGI-----TRIVSTDAVR 291 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCC-----cEEeehhHHH
Confidence 456666889999999999999987643 2366777643
No 416
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.26 E-value=0.14 Score=40.98 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=27.6
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
+-+.++++..|+||||+...+...+....+.+++.++-
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEd 159 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIED 159 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcC
Confidence 34556688899999999999988876513566666643
No 417
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.26 E-value=0.11 Score=44.58 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=31.1
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHh-CCCeEEEEeCCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDADV 71 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~-~g~rVlliD~D~ 71 (168)
.++.+..|+|||.++..+|..+.+. .|++|+++.++.
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 4667889999999999999998751 389999999864
No 418
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=93.25 E-value=0.092 Score=37.01 Aligned_cols=23 Identities=48% Similarity=0.499 Sum_probs=18.9
Q ss_pred EEEecCCCCCChhhHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~l 56 (168)
|.++++..|+||||++..||..+
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 45568899999999999988754
No 419
>PLN02422 dephospho-CoA kinase
Probab=93.24 E-value=0.15 Score=38.55 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=24.2
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+.|++ .+.-|+||||++..|+ + .|.. +||+|.-
T Consensus 2 ~~igl-tG~igsGKstv~~~l~----~-~g~~--~idaD~~ 34 (232)
T PLN02422 2 RVVGL-TGGIASGKSTVSNLFK----S-SGIP--VVDADKV 34 (232)
T ss_pred eEEEE-ECCCCCCHHHHHHHHH----H-CCCe--EEehhHH
Confidence 45666 5788999999988876 3 5654 5888873
No 420
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=93.23 E-value=0.093 Score=38.30 Aligned_cols=35 Identities=29% Similarity=0.245 Sum_probs=21.3
Q ss_pred EEEecCCCCCChhhHHHHH-HHHHHHhCCCeEEEEeCC
Q 030973 34 IAVASGKGGVGKSTTAVNL-AVALASKCQLKVGLLDAD 70 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~L-A~~la~~~g~rVlliD~D 70 (168)
|.++.++.|+|||..|+.. ....-+ .|++|+. +.+
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~-~gr~V~t-ni~ 37 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALK-KGRPVYT-NIP 37 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGG-S---EEE---T
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHh-CCCEEEE-ccC
Confidence 6778899999999999888 655555 6777665 665
No 421
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=93.20 E-value=0.15 Score=44.93 Aligned_cols=33 Identities=33% Similarity=0.311 Sum_probs=29.8
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli 67 (168)
++++.+.+|+||||+...+...+.. .|++|+++
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~-~g~~V~~~ 402 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEA-AGYRVIGA 402 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHh-CCCeEEEE
Confidence 6778899999999999999888888 89999987
No 422
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.17 E-value=0.098 Score=39.81 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=20.8
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
+.++.+..|+||||++..++..+..
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 4556889999999999999887764
No 423
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=93.12 E-value=0.075 Score=46.19 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=25.5
Q ss_pred CCCCeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
..+++++|| .+.+|+|||+++..+|.+|.+
T Consensus 435 s~qGkIlCf-~GPPGVGKTSI~kSIA~ALnR 464 (906)
T KOG2004|consen 435 SVQGKILCF-VGPPGVGKTSIAKSIARALNR 464 (906)
T ss_pred cCCCcEEEE-eCCCCCCcccHHHHHHHHhCC
Confidence 446888888 567899999999999999977
No 424
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=93.08 E-value=0.12 Score=39.42 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=24.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
|.+|++| +.-|+||||++..|...+ |. -+||+|.-
T Consensus 1 M~iIGlT-GgIgSGKStVs~~L~~~~----G~--~viDaD~i 35 (244)
T PTZ00451 1 MILIGLT-GGIACGKSTVSRILREEH----HI--EVIDADLV 35 (244)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHc----CC--eEEehHHH
Confidence 3467774 577999999987665432 44 45899873
No 425
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.07 E-value=0.094 Score=37.82 Aligned_cols=21 Identities=38% Similarity=0.419 Sum_probs=17.1
Q ss_pred EecCCCCCChhhHHHHHHHHH
Q 030973 36 VASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~l 56 (168)
++.+.+|+||||+|..||..+
T Consensus 3 ~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 3 LLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEECCCCCCHHHHHHHHHHHc
Confidence 445679999999999988764
No 426
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.01 E-value=0.075 Score=37.49 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=15.4
Q ss_pred EEEecCCCCCChhhHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVA 55 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~ 55 (168)
|+| ++..|+||||++..|+..
T Consensus 2 I~i-~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVI-TGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEE-E--TTSHHHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHc
Confidence 444 677899999999998865
No 427
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.98 E-value=0.17 Score=40.20 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=27.0
Q ss_pred EEecCCCCCChhhHHHHHHHHHHH-hCCCeEEEEe
Q 030973 35 AVASGKGGVGKSTTAVNLAVALAS-KCQLKVGLLD 68 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~-~~g~rVlliD 68 (168)
.++++..|+||||+...|...+.. ..+.|++.|+
T Consensus 147 ilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiE 181 (323)
T PRK13833 147 IVISGGTGSGKTTLANAVIAEIVASAPEDRLVILE 181 (323)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEec
Confidence 456899999999999999888753 1467888877
No 428
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.97 E-value=0.14 Score=42.49 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=30.3
Q ss_pred EEecCCCCCChhhHHHHHHHHHHH-hCCCeEEEEeCCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALAS-KCQLKVGLLDADV 71 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~-~~g~rVlliD~D~ 71 (168)
.++.+..|+|||.++..++..+.+ ..+.+|+++.++.
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~ 181 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDE 181 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 455788999999999999998874 1579999998754
No 429
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=92.94 E-value=0.13 Score=45.79 Aligned_cols=46 Identities=20% Similarity=0.150 Sum_probs=34.0
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCccccc
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMM 80 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~ 80 (168)
.++.+..|+||||++..|+..+.+..|-+|+++|-+-..-.+...+
T Consensus 444 ~~I~G~tGsGKS~l~~~l~~~~~~~~g~~v~i~D~~~s~~~l~~al 489 (811)
T PRK13873 444 TLVVGPTGAGKSVLLALMALQFRRYPGAQVFAFDFGGSIRAATLAM 489 (811)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHhc
Confidence 3356888999999999998876552488999999987543333333
No 430
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=92.94 E-value=0.29 Score=36.77 Aligned_cols=42 Identities=21% Similarity=0.172 Sum_probs=32.9
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
...|++.+.-+-++-|||++|..|+++|.- .|.++=++....
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w-~g~~~~vFn~g~ 50 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYLNW-LGVKTKVFNVGD 50 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHH-TT--EEEEEHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh-cCCCcceeeccc
Confidence 447888899999999999999999999999 999998887654
No 431
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=92.92 E-value=0.28 Score=43.70 Aligned_cols=40 Identities=28% Similarity=0.188 Sum_probs=36.0
Q ss_pred cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (168)
Q Consensus 27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli 67 (168)
++-..+.+.|++..-++|||.+++.|+..++. .|.+|.++
T Consensus 23 ~~~~~~~~fI~GtnT~VGKT~vS~~L~~~~~~-~g~~~~y~ 62 (817)
T PLN02974 23 LPLSCPAFAVWGANTAVGKTLVSAGLAAAAAS-RRSPVLYV 62 (817)
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHHHHHH-cCCceEEE
Confidence 44557899999999999999999999999999 99998875
No 432
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=92.90 E-value=0.13 Score=40.76 Aligned_cols=42 Identities=33% Similarity=0.476 Sum_probs=35.8
Q ss_pred CeEEEEec-CCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVAS-GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s-~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.+||+|=| .-||.|||-++..||..|.+ +|.|+-++.=...+
T Consensus 47 vPVI~VGNltvGGtGKTP~vi~la~~l~~-rG~~~gvvSRGYgg 89 (336)
T COG1663 47 VPVICVGNLTVGGTGKTPVVIWLAEALQA-RGVRVGVVSRGYGG 89 (336)
T ss_pred CCEEEEccEEECCCCcCHHHHHHHHHHHh-cCCeeEEEecCcCC
Confidence 67787755 36999999999999999999 99999999876544
No 433
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=92.89 E-value=0.21 Score=43.11 Aligned_cols=35 Identities=23% Similarity=0.049 Sum_probs=31.3
Q ss_pred cCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 38 SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 38 s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
-+.-|+|||++...|+....+ .|..|+++|-+-..
T Consensus 186 ~GtTGsGKT~l~~~li~q~i~-~g~~vi~fDpkgD~ 220 (643)
T TIGR03754 186 LGTTRVGKTRLAELLITQDIR-RGDVVIVFDPKGDA 220 (643)
T ss_pred ECCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCCCCH
Confidence 477899999999999999999 99999999988744
No 434
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.85 E-value=0.11 Score=37.82 Aligned_cols=24 Identities=42% Similarity=0.452 Sum_probs=18.7
Q ss_pred EEEEecCCCCCChhhHHHHHHHHH
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
.+.+.|+.+|+||||++..|=...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 456668999999999988775443
No 435
>PRK07413 hypothetical protein; Validated
Probab=92.84 E-value=0.81 Score=37.14 Aligned_cols=37 Identities=27% Similarity=0.242 Sum_probs=28.9
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCC------eEEEEeCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQL------KVGLLDADV 71 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~------rVlliD~D~ 71 (168)
.|.|+. ..|=||||.|..+|...+- .|+ ||+++=+=-
T Consensus 202 ~i~VYT-G~GKGKTTAAlGlAlRA~G-~G~~~~~~~rV~ivQFlK 244 (382)
T PRK07413 202 GIEIYT-GEGKGKSTSALGKALQAIG-RGISQDKSHRVLILQWLK 244 (382)
T ss_pred eEEEEe-CCCCCchHHHHHHHHHHhc-CCCCcccCceEEEEEECC
Confidence 344433 3467999999999999999 997 999987643
No 436
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.81 E-value=0.62 Score=41.19 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=21.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
.+.+. +++..|+||||++..||+.|-.
T Consensus 38 ~HAyL-FtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 38 HHAYL-FTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred CeEEE-EECCCCCCHHHHHHHHHHHhcC
Confidence 34444 5677899999999999998864
No 437
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.76 E-value=0.13 Score=35.63 Aligned_cols=29 Identities=41% Similarity=0.441 Sum_probs=21.9
Q ss_pred ecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.+.+|+||||++..||..+ |.+ .+|.|.
T Consensus 4 l~G~~GsGKstla~~la~~l----~~~--~~~~d~ 32 (154)
T cd00464 4 LIGMMGAGKTTVGRLLAKAL----GLP--FVDLDE 32 (154)
T ss_pred EEcCCCCCHHHHHHHHHHHh----CCC--EEEchH
Confidence 46789999999999998876 333 456664
No 438
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=92.75 E-value=0.29 Score=36.16 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=29.8
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+++.=.|++..+|+|||--...-|..+.+ .|..|++==.++
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~-~G~DVViG~vet 43 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKE-QGVDVVIGYVET 43 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHH-TT--EEEEE---
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHH-CCCCEEEEEecC
Confidence 36677788999999999999999999999 999998654444
No 439
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.72 E-value=0.23 Score=43.69 Aligned_cols=32 Identities=38% Similarity=0.469 Sum_probs=24.4
Q ss_pred ecCCCCCChhhHHHHHHHHHHHhC-------CCeEEEEeC
Q 030973 37 ASGKGGVGKSTTAVNLAVALASKC-------QLKVGLLDA 69 (168)
Q Consensus 37 ~s~kgG~GKTt~a~~LA~~la~~~-------g~rVlliD~ 69 (168)
..+.+|+|||+++..||..+.. . +++++-+|+
T Consensus 208 L~G~pG~GKT~l~~~la~~~~~-~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 208 LVGEPGVGKTAIAEGLALRIAE-GKVPENLKNAKIYSLDM 246 (731)
T ss_pred EECCCCCCHHHHHHHHHHHHHh-CCCchhhcCCeEEEecH
Confidence 3478899999999999999976 4 445555553
No 440
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.65 E-value=0.23 Score=40.00 Aligned_cols=35 Identities=29% Similarity=0.287 Sum_probs=24.9
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHh--CCCeEEEE
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASK--CQLKVGLL 67 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~--~g~rVlli 67 (168)
-+.++++..|+||||+...|...+... .+++++.+
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~ 171 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTY 171 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEe
Confidence 344557888999999999999988651 23455544
No 441
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=92.64 E-value=1.8 Score=34.41 Aligned_cols=36 Identities=22% Similarity=0.185 Sum_probs=26.1
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.++++==|+||||+-.++.... .|+|+.+|==+..-
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~---~g~kiAVIVNEfGE 39 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANR---DGKKIAVIVNEFGE 39 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhcc---CCCcEEEEEecCcc
Confidence 3444455899999998887654 58899888776644
No 442
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=92.55 E-value=0.12 Score=38.16 Aligned_cols=20 Identities=35% Similarity=0.390 Sum_probs=16.3
Q ss_pred ecCCCCCChhhHHHHHHHHH
Q 030973 37 ASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 37 ~s~kgG~GKTt~a~~LA~~l 56 (168)
+.+.+|+||||+|..||..+
T Consensus 4 i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 4 LLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EECCCCCCHHHHHHHHHHHc
Confidence 35679999999999988644
No 443
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.54 E-value=0.13 Score=38.07 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=17.3
Q ss_pred EEEecCCCCCChhhHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~l 56 (168)
|.| .+.+|+||||+|..||..+
T Consensus 3 I~v-~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 3 LIL-LGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHh
Confidence 444 5679999999999888665
No 444
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.54 E-value=1.7 Score=35.01 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=21.4
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHH
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
--.++++..|+||||+|..+|..+-.
T Consensus 46 ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 46 HALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 34555788899999999999998865
No 445
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.48 E-value=0.17 Score=39.81 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=26.7
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCC--CeEEEEeCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQ--LKVGLLDAD 70 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g--~rVlliD~D 70 (168)
.++.+..|+||||++..+|..+.. .+ .+++.+++.
T Consensus 39 lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~ 75 (337)
T PRK12402 39 LLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVA 75 (337)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechh
Confidence 345788899999999999998865 43 456677653
No 446
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=92.42 E-value=0.14 Score=44.99 Aligned_cols=38 Identities=29% Similarity=0.303 Sum_probs=24.7
Q ss_pred CCeEEEEecCCCCCChhhHHH-HHHHHHHHhCCCeEEEEeC
Q 030973 30 VKDVIAVASGKGGVGKSTTAV-NLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~-~LA~~la~~~g~rVlliD~ 69 (168)
..++.++-++. |+||||... -|...+.. .+.+||+|-.
T Consensus 48 ~~~V~vVRSpM-GTGKTtaLi~wLk~~l~~-~~~~VLvVSh 86 (824)
T PF02399_consen 48 KRGVLVVRSPM-GTGKTTALIRWLKDALKN-PDKSVLVVSH 86 (824)
T ss_pred CCCeEEEECCC-CCCcHHHHHHHHHHhccC-CCCeEEEEEh
Confidence 34555555555 789998543 34444444 6899999965
No 447
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.41 E-value=0.86 Score=39.68 Aligned_cols=26 Identities=35% Similarity=0.387 Sum_probs=21.2
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHH
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
-..++++..|+||||++..||..|-.
T Consensus 39 HA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34455788899999999999998864
No 448
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=92.37 E-value=0.25 Score=36.70 Aligned_cols=44 Identities=25% Similarity=0.246 Sum_probs=35.3
Q ss_pred CCCCeEEEEecCCCCCChhhHHHHHHHHHHHh--CCCeEEEEeCCC
Q 030973 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASK--CQLKVGLLDADV 71 (168)
Q Consensus 28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~--~g~rVlliD~D~ 71 (168)
+...+.+..+|+.-|+||||++.+|-..+.+. ..+++.-+..|-
T Consensus 27 G~~~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDD 72 (282)
T KOG2878|consen 27 GDDVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDD 72 (282)
T ss_pred CCcCcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecc
Confidence 44467888889999999999999999999883 234787777775
No 449
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=92.35 E-value=0.15 Score=37.88 Aligned_cols=24 Identities=46% Similarity=0.480 Sum_probs=19.9
Q ss_pred EEEecCCCCCChhhHHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALA 57 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la 57 (168)
+.++++.=|+||||+|..||.++.
T Consensus 6 ~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 6 VIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred EEEEecccccCHHHHHHHHHHHhC
Confidence 444588889999999999998874
No 450
>COG0645 Predicted kinase [General function prediction only]
Probab=92.34 E-value=0.13 Score=36.76 Aligned_cols=26 Identities=38% Similarity=0.445 Sum_probs=22.4
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHH
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
.+.++.+-.|+||||+|..|+..+..
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA 27 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGA 27 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCc
Confidence 46777899999999999999988865
No 451
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.34 E-value=0.19 Score=37.82 Aligned_cols=22 Identities=41% Similarity=0.397 Sum_probs=17.5
Q ss_pred EEEecCCCCCChhhHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~l 56 (168)
|.+ .+.+|+||||+|..||..+
T Consensus 9 Ivl-~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVL-FGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHh
Confidence 444 4679999999999998765
No 452
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=92.33 E-value=0.063 Score=39.62 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973 124 VMSALRKMSREVDWGNLDILVIDMPPGT 151 (168)
Q Consensus 124 ~~~~l~~l~~~l~~~~yD~IiiD~p~~~ 151 (168)
..+.+.++...+. ..|.||++|.|=-+
T Consensus 92 r~em~ke~~~~~l-~G~r~ivlDiPLLF 118 (225)
T KOG3220|consen 92 RKEMFKEILKLLL-RGYRVIVLDIPLLF 118 (225)
T ss_pred HHHHHHHHHHHHh-cCCeEEEEechHHH
Confidence 3456677777777 89999999999643
No 453
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=92.33 E-value=0.19 Score=37.21 Aligned_cols=35 Identities=29% Similarity=0.272 Sum_probs=25.0
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
-+|++ .+.-|+||||++..|+.. .|.. ++|+|.-.
T Consensus 7 ~~Igl-TG~iGsGKStv~~~l~~~----lg~~--vidaD~i~ 41 (204)
T PRK14733 7 YPIGI-TGGIASGKSTATRILKEK----LNLN--VVCADTIS 41 (204)
T ss_pred EEEEE-ECCCCCCHHHHHHHHHHH----cCCe--EEeccHHH
Confidence 34555 567899999998877753 3555 58888744
No 454
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=92.30 E-value=0.29 Score=35.97 Aligned_cols=38 Identities=29% Similarity=0.454 Sum_probs=29.1
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.|++ .+..|+||||+...+...+.. . .++.++..|...
T Consensus 3 ~i~i-~G~~GsGKTTll~~l~~~l~~-~-~~~~~~~~d~~~ 40 (199)
T TIGR00101 3 KIGV-AGPVGSGKTALIEALTRALRQ-K-YQLAVITNDIYT 40 (199)
T ss_pred EEEE-ECCCCCCHHHHHHHHHHhhCc-C-CcEEEEeCCcCC
Confidence 3445 578899999999999988765 3 468888887654
No 455
>COG3910 Predicted ATPase [General function prediction only]
Probab=92.29 E-value=0.11 Score=38.10 Aligned_cols=61 Identities=20% Similarity=0.122 Sum_probs=40.0
Q ss_pred cCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHH--hCCCeEEEEeCCCCCCCcccccc
Q 030973 11 LGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALAS--KCQLKVGLLDADVYGPSVPMMMK 81 (168)
Q Consensus 11 ~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~--~~g~rVlliD~D~~~~~l~~~~~ 81 (168)
+|.+...++|+. -|.|+.+-.|+||||+--.+|..+.- ..|.|=.--+.|.++..+...+.
T Consensus 26 ~r~l~~~LeF~a----------pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k 88 (233)
T COG3910 26 FRHLEERLEFRA----------PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAK 88 (233)
T ss_pred HHhhhhhccccC----------ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHH
Confidence 344445666666 37888899999999999988876542 03555444556666555555543
No 456
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=92.28 E-value=0.18 Score=37.63 Aligned_cols=24 Identities=46% Similarity=0.660 Sum_probs=19.1
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHH
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALA 57 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la 57 (168)
+|++ .+..|+||||++..||..+.
T Consensus 4 ~i~i-~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 4 IIAI-DGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHhC
Confidence 4455 67889999999999987664
No 457
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=92.23 E-value=0.21 Score=38.20 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=22.7
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
.++.+++++ .+|+||||++..++..+..
T Consensus 15 ~Gqr~~I~G-~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 15 KGQRGLIVA-PPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCEEEEEC-CCCCCHHHHHHHHHhcccc
Confidence 367777765 5899999999999988766
No 458
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=92.21 E-value=0.2 Score=38.65 Aligned_cols=37 Identities=22% Similarity=0.163 Sum_probs=26.1
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCC----CeEEEEeCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQ----LKVGLLDADV 71 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g----~rVlliD~D~ 71 (168)
-+.|. +..|+||||+.......+.. .+ .++|++-+.-
T Consensus 15 ~~lV~-a~AGSGKT~~l~~ri~~ll~-~~~~~~~~Il~lTft~ 55 (315)
T PF00580_consen 15 PLLVN-AGAGSGKTTTLLERIAYLLY-EGGVPPERILVLTFTN 55 (315)
T ss_dssp EEEEE-E-TTSSHHHHHHHHHHHHHH-TSSSTGGGEEEEESSH
T ss_pred CEEEE-eCCCCCchHHHHHHHHHhhc-cccCChHHheecccCH
Confidence 34443 45999999988887777666 44 6888887654
No 459
>PLN02165 adenylate isopentenyltransferase
Probab=92.20 E-value=0.16 Score=40.41 Aligned_cols=34 Identities=32% Similarity=0.575 Sum_probs=24.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.++|++ .+..|+|||+++..||..+.. -+|++|.
T Consensus 43 g~iivI-iGPTGSGKStLA~~LA~~l~~------eIIsaDs 76 (334)
T PLN02165 43 DKVVVI-MGATGSGKSRLSVDLATRFPS------EIINSDK 76 (334)
T ss_pred CCEEEE-ECCCCCcHHHHHHHHHHHcCC------ceecCCh
Confidence 455555 567899999999998877632 4667764
No 460
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.18 E-value=0.27 Score=39.07 Aligned_cols=43 Identities=26% Similarity=0.214 Sum_probs=30.0
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccc
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMK 81 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~ 81 (168)
.|.+ .+..|+||||++..+|..+ |.+.+-|.++..- +...++|
T Consensus 66 ~ilL-~G~pGtGKTtla~~lA~~l----~~~~~rV~~~~~l-~~~DliG 108 (327)
T TIGR01650 66 RVMV-QGYHGTGKSTHIEQIAARL----NWPCVRVNLDSHV-SRIDLVG 108 (327)
T ss_pred cEEE-EeCCCChHHHHHHHHHHHH----CCCeEEEEecCCC-ChhhcCC
Confidence 3444 6788999999999999877 4567777777643 3333444
No 461
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.10 E-value=0.25 Score=39.40 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=29.2
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCC-----CeEEEEeCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQ-----LKVGLLDADV 71 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g-----~rVlliD~D~ 71 (168)
..++++.+|+|||+++..++..+.+... .+++.|++..
T Consensus 42 ~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 42 NVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 4566889999999999999998875122 4678888754
No 462
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.09 E-value=0.19 Score=37.11 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=17.3
Q ss_pred eEEEEecCCCCCChhhHHHHHHH
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAV 54 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~ 54 (168)
..+.++.+.+|+||||++..|..
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHh
Confidence 34455588999999999877753
No 463
>PRK01184 hypothetical protein; Provisional
Probab=92.08 E-value=0.24 Score=35.60 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=19.0
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli 67 (168)
+.+..+..|+||||++. + +.+ .|..++-.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~---~~~-~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-I---ARE-MGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-H---HHH-cCCcEEEh
Confidence 44457889999999764 3 344 67666433
No 464
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.07 E-value=0.32 Score=39.68 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=28.9
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeCCC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADV 71 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~D~ 71 (168)
.+++..+++ +.+|+||||++.+++..... . +.++.++-.+.
T Consensus 167 GkGQR~lIv-gppGvGKTTLaK~Ian~I~~-nhFDv~~~VvLIgE 209 (416)
T PRK09376 167 GKGQRGLIV-APPKAGKTVLLQNIANSITT-NHPEVHLIVLLIDE 209 (416)
T ss_pred ccCceEEEe-CCCCCChhHHHHHHHHHHHh-hcCCeEEEEEEeCC
Confidence 346677776 56899999999999999987 4 33433344444
No 465
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.06 E-value=0.17 Score=34.89 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=21.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
..+|++ .+.-|+||||++..++..+..
T Consensus 22 ~~~i~l-~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLL-KGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEE-EcCCCCCHHHHHHHHHHHcCC
Confidence 445555 778899999999999987743
No 466
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=92.04 E-value=0.31 Score=43.69 Aligned_cols=40 Identities=23% Similarity=0.181 Sum_probs=32.2
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~ 75 (168)
++.+..|+|||+++..|+..+.+-.|.+|.++|-|-..-.
T Consensus 492 ~I~G~tGsGKS~l~~~L~~~~~k~~~~~v~i~D~~~s~~~ 531 (852)
T PRK13891 492 FMFGPTGAGKSTHLGIIAAQLRRYAGMSIYAFDKGMSMYP 531 (852)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCCEEEEEcCCccccc
Confidence 5568899999999999999887624789999998764433
No 467
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.02 E-value=0.16 Score=40.40 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=26.6
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
-.++++..|+||||+...|...+.. +.|++.|+
T Consensus 162 nili~G~tgSGKTTll~aL~~~ip~--~~ri~tiE 194 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIPA--IERLITVE 194 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhhCCC--CCeEEEec
Confidence 3445788899999999999887754 67898886
No 468
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.01 E-value=0.16 Score=36.39 Aligned_cols=32 Identities=38% Similarity=0.459 Sum_probs=23.1
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|.+ .+..|+||||++..||..+. . -++|.|.
T Consensus 6 ~I~l-iG~~GaGKStl~~~La~~l~----~--~~vd~D~ 37 (172)
T PRK05057 6 NIFL-VGPMGAGKSTIGRQLAQQLN----M--EFYDSDQ 37 (172)
T ss_pred EEEE-ECCCCcCHHHHHHHHHHHcC----C--cEEECCc
Confidence 3444 57789999999999888653 2 3577774
No 469
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=91.96 E-value=0.16 Score=36.76 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=17.6
Q ss_pred EEEecCCCCCChhhHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVA 55 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~ 55 (168)
+.++.+..|+||||+...|+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4555789999999999888553
No 470
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=91.93 E-value=0.22 Score=35.72 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=25.1
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.++.+..|+||||+|..++..+ +.+++.|.+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~----~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS----GLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc----CCCcEeCcCCC
Confidence 34667889999999999887643 55777777643
No 471
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=91.91 E-value=0.32 Score=34.42 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=22.3
Q ss_pred cCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 38 SGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 38 s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
.+..|+||||+...|...... .++.....|
T Consensus 5 ~G~~~~GKStlln~l~~~~~~-~~~~~~~~~ 34 (189)
T cd00881 5 AGHVDHGKTTLTERLLYVTGD-IERDGTVEE 34 (189)
T ss_pred EeCCCCCHHHHHHHHHHhcCC-CCcCCceec
Confidence 468899999999999877655 555555544
No 472
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.89 E-value=0.35 Score=39.13 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=27.7
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHh-CCCeEEEEeC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDA 69 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~-~g~rVlliD~ 69 (168)
+.++++..|+||||+...|..++.+. .+.+++.|+-
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEd 187 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYED 187 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 44568899999999999999988751 2467777753
No 473
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=91.88 E-value=0.3 Score=34.44 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=25.7
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCC--CeEEEEeC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQ--LKVGLLDA 69 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g--~rVlliD~ 69 (168)
.+++.+..|+|||+++...+..... .+ ++++++--
T Consensus 26 ~~~i~~~~GsGKT~~~~~~~~~~~~-~~~~~~~l~~~p 62 (201)
T smart00487 26 DVILAAPTGSGKTLAALLPALEALK-RGKGKRVLVLVP 62 (201)
T ss_pred cEEEECCCCCchhHHHHHHHHHHhc-ccCCCcEEEEeC
Confidence 4455678899999977777777766 54 77887744
No 474
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.86 E-value=0.24 Score=39.21 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=27.6
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHH-hCCCeEEEEeCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALAS-KCQLKVGLLDADV 71 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~-~~g~rVlliD~D~ 71 (168)
-.++++..|+||||+...|+..+.. ....|++.|+-..
T Consensus 150 ~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~ 188 (319)
T PRK13894 150 NILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTG 188 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCC
Confidence 3444689999999999999987642 1467888777543
No 475
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=91.85 E-value=0.31 Score=42.89 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=28.8
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCC--CeEEEEe
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQ--LKVGLLD 68 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g--~rVlliD 68 (168)
+.++.+.+|+||||++..+...+.+ .| ++|++.-
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~-~~~~~~v~l~A 375 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEE-LGGLLPVGLAA 375 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH-cCCCceEEEEe
Confidence 7778899999999999999998888 77 6777653
No 476
>COG1159 Era GTPase [General function prediction only]
Probab=91.77 E-value=0.28 Score=38.22 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=28.5
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccc
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMK 81 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~ 81 (168)
--|++ -+++++||||+.-+ ..|.|+.++.--+|. .-+...|
T Consensus 7 GfVaI-iGrPNvGKSTLlN~-------l~G~KisIvS~k~QT-TR~~I~G 47 (298)
T COG1159 7 GFVAI-IGRPNVGKSTLLNA-------LVGQKISIVSPKPQT-TRNRIRG 47 (298)
T ss_pred EEEEE-EcCCCCcHHHHHHH-------HhcCceEeecCCcch-hhhheeE
Confidence 34555 47999999999543 379999999877765 3334443
No 477
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.66 E-value=0.34 Score=37.72 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=27.6
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
++.+..|+||||++..++..+.. .+.+..+++++.
T Consensus 42 ll~G~~G~GKt~~~~~l~~~l~~-~~~~~~~i~~~~ 76 (319)
T PRK00440 42 LFAGPPGTGKTTAALALARELYG-EDWRENFLELNA 76 (319)
T ss_pred EEECCCCCCHHHHHHHHHHHHcC-CccccceEEecc
Confidence 66889999999999999999876 665555555543
No 478
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.63 E-value=0.18 Score=36.86 Aligned_cols=25 Identities=36% Similarity=0.341 Sum_probs=20.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+++|++ .+..|+||||++..|+..+
T Consensus 5 g~~i~i-~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVL-SGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHhhC
Confidence 556666 5688999999999998865
No 479
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.62 E-value=0.16 Score=40.39 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=25.7
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
.++++..|+||||+.-.|...... ..||+.|+
T Consensus 176 ILisGGTGSGKTTlLNal~~~i~~--~eRvItiE 207 (355)
T COG4962 176 ILISGGTGSGKTTLLNALSGFIDS--DERVITIE 207 (355)
T ss_pred EEEeCCCCCCHHHHHHHHHhcCCC--cccEEEEe
Confidence 445778889999999999988876 44888875
No 480
>PRK00023 cmk cytidylate kinase; Provisional
Probab=91.62 E-value=0.26 Score=36.99 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=20.5
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHH
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+.+..+.+..|+||||++..||..+
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~ 28 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKL 28 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455568899999999999998776
No 481
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=91.54 E-value=0.46 Score=35.56 Aligned_cols=35 Identities=29% Similarity=0.253 Sum_probs=23.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
|+++++++ ..|+|||.+|..||..+ |..|+..|-=
T Consensus 1 M~v~~i~G-pT~tGKt~~ai~lA~~~----g~pvI~~Dri 35 (233)
T PF01745_consen 1 MKVYLIVG-PTGTGKTALAIALAQKT----GAPVISLDRI 35 (233)
T ss_dssp -EEEEEE--STTSSHHHHHHHHHHHH------EEEEE-SG
T ss_pred CcEEEEEC-CCCCChhHHHHHHHHHh----CCCEEEecce
Confidence 45666654 56899999998888766 5578777753
No 482
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=91.53 E-value=0.31 Score=40.41 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=26.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEE
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL 66 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVll 66 (168)
.++|+|++.. ||||++..++..|.. .|.++.+
T Consensus 110 ~p~vaITGTN---GKTTTTsli~~~l~~-~G~~~~l 141 (448)
T COG0771 110 APIVAITGTN---GKTTTTSLIAHLLKA-AGLDALL 141 (448)
T ss_pred CCEEEEECCC---chHHHHHHHHHHHHh-cCCCcee
Confidence 6689997655 899999999999999 8887654
No 483
>PRK08356 hypothetical protein; Provisional
Probab=91.53 E-value=0.24 Score=36.08 Aligned_cols=26 Identities=27% Similarity=0.166 Sum_probs=19.7
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeE
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKV 64 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rV 64 (168)
+.++++..|+||||+|..|+ + .|..+
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~----~-~g~~~ 32 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFE----E-KGFCR 32 (195)
T ss_pred EEEEECCCCCCHHHHHHHHH----H-CCCcE
Confidence 44568999999999998884 4 46653
No 484
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=91.52 E-value=0.23 Score=35.74 Aligned_cols=30 Identities=37% Similarity=0.337 Sum_probs=22.0
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
...+..|+||||++..|+. .|. .+||+|.-
T Consensus 3 ~itG~~gsGKst~~~~l~~-----~g~--~~i~~D~~ 32 (179)
T cd02022 3 GLTGGIGSGKSTVAKLLKE-----LGI--PVIDADKI 32 (179)
T ss_pred EEECCCCCCHHHHHHHHHH-----CCC--CEEecCHH
Confidence 3467899999999887765 354 45788763
No 485
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=91.52 E-value=0.39 Score=36.58 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=36.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMK 81 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~ 81 (168)
..-+.+ .+..|+|||++...+...++. .|.|++-|+-+--. .+..++.
T Consensus 52 annvLL-~G~rGtGKSSlVkall~~y~~-~GLRlIev~k~~L~-~l~~l~~ 99 (249)
T PF05673_consen 52 ANNVLL-WGARGTGKSSLVKALLNEYAD-QGLRLIEVSKEDLG-DLPELLD 99 (249)
T ss_pred CcceEE-ecCCCCCHHHHHHHHHHHHhh-cCceEEEECHHHhc-cHHHHHH
Confidence 344555 567799999999999999999 99998888776532 5554444
No 486
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.49 E-value=0.2 Score=35.79 Aligned_cols=24 Identities=42% Similarity=0.443 Sum_probs=18.4
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHH
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
++|++ .+..|+||||++..|+..+
T Consensus 2 ~ii~l-~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVI-SGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEE-ECCCCCCHHHHHHHHHccC
Confidence 34444 6689999999998888754
No 487
>PLN02748 tRNA dimethylallyltransferase
Probab=91.49 E-value=0.27 Score=40.99 Aligned_cols=38 Identities=39% Similarity=0.570 Sum_probs=28.0
Q ss_pred cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..+..++|+| .+..|+|||++|..||..+. .-+|++|.
T Consensus 18 ~~~~~~~i~i-~GptgsGKs~la~~la~~~~------~eii~~Ds 55 (468)
T PLN02748 18 QKGKAKVVVV-MGPTGSGKSKLAVDLASHFP------VEIINADS 55 (468)
T ss_pred cCCCCCEEEE-ECCCCCCHHHHHHHHHHhcC------eeEEcCch
Confidence 4555666666 56779999999998887652 46888885
No 488
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.45 E-value=0.19 Score=39.05 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=18.8
Q ss_pred EEecCCCCCChhhHHHHHHHHHH
Q 030973 35 AVASGKGGVGKSTTAVNLAVALA 57 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la 57 (168)
.++.+.+|+|||+++..+|..+.
T Consensus 33 ~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 34578889999999999988764
No 489
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=91.41 E-value=0.34 Score=43.66 Aligned_cols=38 Identities=24% Similarity=0.240 Sum_probs=30.2
Q ss_pred ecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973 37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (168)
Q Consensus 37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~ 74 (168)
+-+..|+|||+++..+...+-...|-+|.+||.+-...
T Consensus 480 I~G~TGSGKS~l~~~li~q~~~~~~~~v~IiD~g~sy~ 517 (893)
T TIGR03744 480 ILGPTGAGKSATLTNLLMQVMAVHRPRLFIVEAGNSFG 517 (893)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCCCHH
Confidence 34788999999999998777652478999999987543
No 490
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=91.40 E-value=0.13 Score=45.31 Aligned_cols=51 Identities=27% Similarity=0.220 Sum_probs=37.5
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC--CCcccccccCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG--PSVPMMMKIDQK 85 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~--~~l~~~~~~~~~ 85 (168)
..++.+..|||||-+|..||..|-. .....+=||+..+. ++++.+.|.++.
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg-~e~aliR~DMSEy~EkHsVSrLIGaPPG 575 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFG-DEQALIRIDMSEYMEKHSVSRLIGAPPG 575 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcC-CCccceeechHHHHHHHHHHHHhCCCCC
Confidence 5555778899999999999999965 44566667766533 577777776654
No 491
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=91.39 E-value=0.6 Score=38.16 Aligned_cols=47 Identities=26% Similarity=0.312 Sum_probs=38.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCccccc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMM 80 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~ 80 (168)
++++.+ .+.+|.||||+|..+-..+.+ ...|++|..-.....+..++
T Consensus 10 G~TLLI-KG~PGTGKTtfaLelL~~l~~--~~~v~YISTRVd~d~vy~~y 56 (484)
T PF07088_consen 10 GQTLLI-KGEPGTGKTTFALELLNSLKD--HGNVMYISTRVDQDTVYEMY 56 (484)
T ss_pred CcEEEE-ecCCCCCceeeehhhHHHHhc--cCCeEEEEeccCHHHHHHhh
Confidence 666665 889999999999999999876 56899999887776777665
No 492
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.37 E-value=0.35 Score=43.37 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=31.1
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
..++.+..|+|||++|..||..+-. .+...+.+|+...
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~-~~~~~i~id~se~ 637 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFD-SDDAMVRIDMSEF 637 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhc-CCCcEEEEEhHHh
Confidence 4445688899999999999998877 7778888988653
No 493
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=91.35 E-value=0.33 Score=43.83 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=31.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
++..+++. .-|+||||+-...+..+|. .|+|+++|=
T Consensus 97 g~SFaiiA-PTGvGKTTfg~~~sl~~a~-kgkr~yii~ 132 (1187)
T COG1110 97 GKSFAIIA-PTGVGKTTFGLLMSLYLAK-KGKRVYIIV 132 (1187)
T ss_pred CCceEEEc-CCCCchhHHHHHHHHHHHh-cCCeEEEEe
Confidence 56777754 4589999999999999999 999999883
No 494
>PLN02318 phosphoribulokinase/uridine kinase
Probab=91.33 E-value=0.2 Score=42.95 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=26.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.++|.-+.+..|+||||++..|+..+. .+.+|.+|-.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp-----~vgvIsmDdy 100 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMP-----SIAVISMDNY 100 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCC-----CcEEEEEcce
Confidence 445555688999999999999986642 3555655543
No 495
>COG1160 Predicted GTPases [General function prediction only]
Probab=91.19 E-value=5.9 Score=32.86 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=54.6
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCccC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLV 111 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 111 (168)
++|+++ ++++|||||+ +-+..|+|+-+|+==| ++..- + ...........+.++..|-+.
T Consensus 4 ~~VAIV-GRPNVGKSTL-------FNRL~g~r~AIV~D~p---GvTRD------r----~y~~~~~~~~~f~lIDTgGl~ 62 (444)
T COG1160 4 PVVAIV-GRPNVGKSTL-------FNRLTGRRIAIVSDTP---GVTRD------R----IYGDAEWLGREFILIDTGGLD 62 (444)
T ss_pred CEEEEE-CCCCCcHHHH-------HHHHhCCeeeEeecCC---CCccC------C----ccceeEEcCceEEEEECCCCC
Confidence 567774 7999999998 4444678888876322 22111 0 111222333445666555333
Q ss_pred CCCCCcccCchhHHHHHHHHHHhhcCCCCcE--EEEeCCCCCCHHHHHHHhhc
Q 030973 112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDI--LVIDMPPGTGDAQLTTTQTL 162 (168)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~--IiiD~p~~~~~~~~~~~~~~ 162 (168)
..... .......++....+ ++-|. -++|.-.|+++.--.+++.+
T Consensus 63 ~~~~~-----~l~~~i~~Qa~~Ai--~eADvilfvVD~~~Git~~D~~ia~~L 108 (444)
T COG1160 63 DGDED-----ELQELIREQALIAI--EEADVILFVVDGREGITPADEEIAKIL 108 (444)
T ss_pred cCCch-----HHHHHHHHHHHHHH--HhCCEEEEEEeCCCCCCHHHHHHHHHH
Confidence 22221 12222333333333 35565 46798888877766555543
No 496
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=91.11 E-value=0.17 Score=44.87 Aligned_cols=31 Identities=26% Similarity=0.138 Sum_probs=25.5
Q ss_pred CCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 40 KGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 40 kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+-|+|||.+++-.|+.-|. .|+.|.+|-.+.
T Consensus 97 ~TGEGKTL~a~l~ayl~aL-~G~~VhVvT~Nd 127 (870)
T CHL00122 97 KTGEGKTLVATLPAYLNAL-TGKGVHIVTVND 127 (870)
T ss_pred cCCCCchHHHHHHHHHHHh-cCCceEEEeCCH
Confidence 6799999877777766666 999999998776
No 497
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=91.10 E-value=0.24 Score=40.47 Aligned_cols=28 Identities=29% Similarity=0.241 Sum_probs=22.1
Q ss_pred CCCCeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 28 DGVKDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
.-..+.|+| .+..|+||||++..||..+
T Consensus 216 ~~~~~~IvI-~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 216 PFFVRTVAI-LGGESSGKSTLVNKLANIF 243 (399)
T ss_pred hCCCcEEEE-EcCCCCCHHHHHHHHHHHh
Confidence 345677777 4677999999999999875
No 498
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=91.06 E-value=0.16 Score=35.31 Aligned_cols=19 Identities=42% Similarity=0.497 Sum_probs=16.7
Q ss_pred CCCCCChhhHHHHHHHHHH
Q 030973 39 GKGGVGKSTTAVNLAVALA 57 (168)
Q Consensus 39 ~kgG~GKTt~a~~LA~~la 57 (168)
+.+|+||||+|..||..+.
T Consensus 3 G~PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 3 GPPGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp ESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHhcC
Confidence 6789999999999998763
No 499
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=91.05 E-value=0.21 Score=36.11 Aligned_cols=31 Identities=39% Similarity=0.395 Sum_probs=21.8
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.+.+..|+||||++..|+... |.. ++|+|.-
T Consensus 3 ~itG~~gsGKst~~~~l~~~~----~~~--~i~~D~~ 33 (188)
T TIGR00152 3 GLTGGIGSGKSTVANYLADKY----HFP--VIDADKI 33 (188)
T ss_pred EEECCCCCCHHHHHHHHHHhc----CCe--EEeCCHH
Confidence 346788999999987766532 233 5888874
No 500
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=91.04 E-value=0.18 Score=36.05 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=16.1
Q ss_pred cCCCCCChhhHHHHHHHHHH
Q 030973 38 SGKGGVGKSTTAVNLAVALA 57 (168)
Q Consensus 38 s~kgG~GKTt~a~~LA~~la 57 (168)
-+.-||||||++..|+..+.
T Consensus 5 IAtiGCGKTTva~aL~~LFg 24 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFG 24 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcC
Confidence 35679999999999986655
Done!