Query 030973
Match_columns 168
No_of_seqs 169 out of 1188
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 11:26:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3la6_A Tyrosine-protein kinase 100.0 5.9E-29 2E-33 191.4 5.7 139 4-153 69-215 (286)
2 3bfv_A CAPA1, CAPB2, membrane 99.9 1.7E-28 5.9E-33 187.5 5.3 138 4-152 59-204 (271)
3 3cio_A ETK, tyrosine-protein k 99.9 8.5E-28 2.9E-32 186.0 5.4 137 5-152 82-226 (299)
4 2ph1_A Nucleotide-binding prot 99.9 6.2E-26 2.1E-30 172.2 12.0 133 27-160 14-149 (262)
5 3ea0_A ATPase, para family; al 99.9 1.5E-24 5.1E-29 162.3 7.6 125 29-161 2-140 (245)
6 3pg5_A Uncharacterized protein 99.9 1.8E-24 6.2E-29 171.3 7.9 129 31-161 1-175 (361)
7 3q9l_A Septum site-determining 99.9 3.4E-23 1.2E-27 156.2 11.9 121 31-160 2-134 (260)
8 1g3q_A MIND ATPase, cell divis 99.9 6.8E-23 2.3E-27 152.7 10.3 121 31-160 2-132 (237)
9 1hyq_A MIND, cell division inh 99.9 1.2E-22 4.1E-27 153.7 11.6 121 31-160 2-131 (263)
10 3k9g_A PF-32 protein; ssgcid, 99.9 4.6E-23 1.6E-27 156.5 7.7 129 28-161 24-166 (267)
11 3kjh_A CO dehydrogenase/acetyl 99.9 8.1E-23 2.8E-27 153.0 8.7 120 33-159 2-151 (254)
12 4dzz_A Plasmid partitioning pr 99.9 3.4E-22 1.2E-26 145.7 11.5 97 31-161 1-97 (206)
13 3fkq_A NTRC-like two-domain pr 99.9 2.3E-22 7.9E-27 159.8 11.0 126 28-161 140-281 (373)
14 3ez9_A Para; DNA binding, wing 99.9 1.1E-22 3.6E-27 163.2 8.7 131 27-160 107-268 (403)
15 3ez2_A Plasmid partition prote 99.9 1.3E-22 4.4E-27 162.4 8.6 132 27-160 104-265 (398)
16 3end_A Light-independent proto 99.9 8.7E-22 3E-26 152.4 11.0 133 9-153 23-170 (307)
17 1wcv_1 SOJ, segregation protei 99.9 1.3E-22 4.3E-27 153.5 6.0 121 30-160 5-132 (257)
18 3fwy_A Light-independent proto 99.9 9.9E-22 3.4E-26 152.8 11.1 121 29-154 46-178 (314)
19 3ug7_A Arsenical pump-driving 99.9 6.1E-23 2.1E-27 161.9 4.0 75 5-85 3-77 (349)
20 1cp2_A CP2, nitrogenase iron p 99.9 5.7E-22 2E-26 150.4 7.9 118 31-152 1-128 (269)
21 2afh_E Nitrogenase iron protei 99.9 7.6E-22 2.6E-26 151.5 8.2 118 31-152 2-131 (289)
22 2xj4_A MIPZ; replication, cell 99.9 8.2E-22 2.8E-26 151.3 8.3 121 31-161 4-125 (286)
23 2oze_A ORF delta'; para, walke 99.8 3E-21 1E-25 148.6 8.1 127 31-160 34-175 (298)
24 2woo_A ATPase GET3; tail-ancho 99.8 1.1E-20 3.7E-25 147.9 9.1 67 10-83 2-68 (329)
25 2woj_A ATPase GET3; tail-ancho 99.8 6.2E-21 2.1E-25 150.6 4.8 55 29-85 15-71 (354)
26 3zq6_A Putative arsenical pump 99.8 1.4E-19 4.8E-24 141.3 10.5 53 31-85 13-65 (324)
27 3iqw_A Tail-anchored protein t 99.8 7.9E-20 2.7E-24 143.2 7.5 53 30-84 14-66 (334)
28 3cwq_A Para family chromosome 99.8 1.6E-19 5.4E-24 132.8 6.9 88 32-160 1-89 (209)
29 3io3_A DEHA2D07832P; chaperone 99.7 2.4E-18 8.2E-23 135.4 6.6 53 30-84 16-70 (348)
30 3igf_A ALL4481 protein; two-do 99.7 4.5E-17 1.5E-21 129.2 8.9 51 32-85 2-52 (374)
31 1ihu_A Arsenical pump-driving 99.7 3.9E-17 1.3E-21 136.5 7.2 54 31-86 7-60 (589)
32 1byi_A Dethiobiotin synthase; 99.6 7.9E-17 2.7E-21 118.8 4.8 37 31-68 1-37 (224)
33 2xxa_A Signal recognition part 99.6 1.2E-15 3.9E-20 123.3 8.4 98 29-152 98-196 (433)
34 1zu4_A FTSY; GTPase, signal re 99.6 7.2E-15 2.5E-19 114.4 7.5 103 29-153 103-205 (320)
35 1ihu_A Arsenical pump-driving 99.5 8.5E-16 2.9E-20 128.4 1.3 53 29-83 324-376 (589)
36 1j8m_F SRP54, signal recogniti 99.5 6E-14 2.1E-18 108.2 7.6 96 31-152 98-193 (297)
37 1ls1_A Signal recognition part 99.4 1.5E-13 5E-18 106.0 6.3 97 30-152 97-193 (295)
38 1yrb_A ATP(GTP)binding protein 99.4 4.4E-14 1.5E-18 106.3 2.9 45 30-76 12-56 (262)
39 2ffh_A Protein (FFH); SRP54, s 99.4 1.8E-13 6.1E-18 110.1 6.5 97 30-152 97-193 (425)
40 3dm5_A SRP54, signal recogniti 99.4 1.2E-12 4.1E-17 105.6 8.5 96 30-151 99-194 (443)
41 2v3c_C SRP54, signal recogniti 99.4 2.2E-12 7.6E-17 104.1 8.7 95 31-152 99-193 (432)
42 2j37_W Signal recognition part 99.3 2.7E-12 9.1E-17 105.3 6.3 98 29-152 99-196 (504)
43 3kl4_A SRP54, signal recogniti 99.2 4.3E-11 1.5E-15 96.5 8.5 97 30-152 96-192 (433)
44 1vma_A Cell division protein F 99.2 2.4E-11 8.3E-16 93.9 6.3 45 29-75 102-146 (306)
45 2px0_A Flagellar biosynthesis 99.2 1.2E-10 4.3E-15 89.6 9.2 49 29-78 103-151 (296)
46 3pzx_A Formate--tetrahydrofola 99.1 9.1E-11 3.1E-15 94.5 4.7 75 8-86 33-111 (557)
47 2r8r_A Sensor protein; KDPD, P 99.0 4.9E-10 1.7E-14 82.8 6.6 45 30-75 4-48 (228)
48 3p32_A Probable GTPase RV1496/ 98.9 3.5E-09 1.2E-13 83.3 8.8 43 30-74 78-120 (355)
49 3of5_A Dethiobiotin synthetase 98.8 3.1E-09 1.1E-13 78.8 4.2 38 30-68 3-40 (228)
50 3qxc_A Dethiobiotin synthetase 98.7 1E-08 3.4E-13 76.7 4.4 42 26-68 16-57 (242)
51 2p67_A LAO/AO transport system 98.7 1.3E-08 4.5E-13 79.6 5.3 44 30-75 55-98 (341)
52 3fgn_A Dethiobiotin synthetase 98.7 2.6E-08 8.8E-13 74.9 6.4 39 29-68 24-62 (251)
53 3e70_C DPA, signal recognition 98.4 1.1E-06 3.9E-11 68.4 8.1 45 29-75 127-171 (328)
54 1g5t_A COB(I)alamin adenosyltr 98.2 3.8E-06 1.3E-10 60.6 7.5 38 32-71 29-66 (196)
55 2yhs_A FTSY, cell division pro 98.2 3.8E-06 1.3E-10 68.6 8.1 42 30-73 292-333 (503)
56 1u94_A RECA protein, recombina 98.2 1.2E-05 4E-10 63.3 9.9 40 31-72 63-102 (356)
57 1rj9_A FTSY, signal recognitio 98.1 6.4E-06 2.2E-10 63.4 7.6 44 30-75 101-144 (304)
58 1xp8_A RECA protein, recombina 98.0 2.8E-05 9.5E-10 61.4 8.9 40 31-72 74-113 (366)
59 1xjc_A MOBB protein homolog; s 97.9 2.4E-05 8.2E-10 55.2 5.9 42 30-73 3-44 (169)
60 2b8t_A Thymidine kinase; deoxy 97.8 0.00014 4.7E-09 53.5 9.4 36 33-69 13-48 (223)
61 2cvh_A DNA repair and recombin 97.8 3.1E-05 1.1E-09 55.9 5.8 35 34-72 22-56 (220)
62 2zr9_A Protein RECA, recombina 97.8 7.9E-05 2.7E-09 58.4 8.0 40 31-72 61-100 (349)
63 3hr8_A Protein RECA; alpha and 97.8 0.0002 6.7E-09 56.3 9.9 41 31-73 61-101 (356)
64 2w0m_A SSO2452; RECA, SSPF, un 97.7 0.00011 3.8E-09 53.2 7.0 40 31-72 23-62 (235)
65 3io5_A Recombination and repai 97.6 0.00029 1E-08 54.5 8.6 39 34-73 30-70 (333)
66 2yvu_A Probable adenylyl-sulfa 97.6 9.1E-05 3.1E-09 52.3 5.1 40 31-72 13-52 (186)
67 1xx6_A Thymidine kinase; NESG, 97.6 0.00035 1.2E-08 50.1 8.1 36 31-68 8-43 (191)
68 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 0.00013 4.3E-09 54.7 5.3 40 31-72 4-43 (260)
69 3b9q_A Chloroplast SRP recepto 97.4 0.00027 9.2E-09 54.3 6.5 43 30-74 99-141 (302)
70 2og2_A Putative signal recogni 97.4 0.00034 1.2E-08 55.0 6.5 43 30-74 156-198 (359)
71 2www_A Methylmalonic aciduria 97.4 0.0027 9.3E-08 49.5 11.5 43 31-75 74-116 (349)
72 2dr3_A UPF0273 protein PH0284; 97.4 0.00024 8.1E-09 52.0 5.1 40 31-72 23-62 (247)
73 3bh0_A DNAB-like replicative h 97.3 0.00028 9.6E-09 54.4 5.5 39 33-72 69-107 (315)
74 1a7j_A Phosphoribulokinase; tr 97.3 0.00021 7E-09 54.6 4.0 42 31-74 5-46 (290)
75 2qm8_A GTPase/ATPase; G protei 97.2 0.0014 4.7E-08 51.0 8.2 41 31-73 55-95 (337)
76 3bgw_A DNAB-like replicative h 97.2 0.00039 1.3E-08 56.2 5.0 42 32-74 197-238 (444)
77 1nks_A Adenylate kinase; therm 97.2 0.00033 1.1E-08 49.3 3.9 37 32-70 2-38 (194)
78 4a1f_A DNAB helicase, replicat 97.2 0.0005 1.7E-08 53.6 5.2 40 33-73 47-86 (338)
79 1np6_A Molybdopterin-guanine d 97.2 0.00082 2.8E-08 47.4 5.8 41 31-73 6-46 (174)
80 2j9r_A Thymidine kinase; TK1, 97.1 0.0016 5.6E-08 47.4 7.4 35 33-68 29-63 (214)
81 2zts_A Putative uncharacterize 97.1 0.00054 1.8E-08 50.1 4.9 41 33-73 31-71 (251)
82 2kjq_A DNAA-related protein; s 97.1 0.0037 1.2E-07 42.8 8.6 39 31-71 36-74 (149)
83 2wsm_A Hydrogenase expression/ 97.1 0.00086 3E-08 48.3 5.5 40 31-73 30-69 (221)
84 1uj2_A Uridine-cytidine kinase 97.0 0.00049 1.7E-08 51.1 3.6 43 31-74 22-68 (252)
85 1rz3_A Hypothetical protein rb 97.0 0.0012 3.9E-08 47.3 5.2 41 31-73 22-62 (201)
86 3cmw_A Protein RECA, recombina 96.9 0.0044 1.5E-07 57.4 9.4 39 34-73 734-772 (1706)
87 2q6t_A DNAB replication FORK h 96.8 0.0013 4.5E-08 52.9 5.1 40 33-72 201-240 (444)
88 2r6a_A DNAB helicase, replicat 96.8 0.0016 5.4E-08 52.6 5.5 40 34-73 205-244 (454)
89 2w58_A DNAI, primosome compone 96.8 0.0012 4.3E-08 46.9 4.4 37 32-70 55-91 (202)
90 2orw_A Thymidine kinase; TMTK, 96.8 0.0016 5.5E-08 46.2 4.8 35 34-69 5-39 (184)
91 3uie_A Adenylyl-sulfate kinase 96.8 0.0016 5.6E-08 46.4 4.8 42 31-74 25-66 (200)
92 2pez_A Bifunctional 3'-phospho 96.8 0.0016 5.5E-08 45.5 4.6 41 31-73 5-45 (179)
93 3cmw_A Protein RECA, recombina 96.8 0.0079 2.7E-07 55.8 10.0 40 33-73 384-423 (1706)
94 2hf9_A Probable hydrogenase ni 96.7 0.0017 5.9E-08 46.8 4.7 40 30-72 37-76 (226)
95 1vco_A CTP synthetase; tetrame 96.7 0.012 4.2E-07 48.6 10.2 42 30-72 11-53 (550)
96 3cmu_A Protein RECA, recombina 96.7 0.0079 2.7E-07 56.5 9.7 40 33-73 384-423 (2050)
97 1q57_A DNA primase/helicase; d 96.7 0.00085 2.9E-08 54.8 3.0 40 33-73 243-283 (503)
98 2z43_A DNA repair and recombin 96.7 0.0013 4.4E-08 50.8 3.7 40 31-72 107-152 (324)
99 3bos_A Putative DNA replicatio 96.7 0.0022 7.5E-08 46.4 4.8 40 31-72 52-91 (242)
100 1m7g_A Adenylylsulfate kinase; 96.6 0.0016 5.4E-08 46.9 3.9 41 31-73 25-66 (211)
101 1kht_A Adenylate kinase; phosp 96.6 0.0014 4.6E-08 46.0 3.5 36 34-70 5-40 (192)
102 2pbr_A DTMP kinase, thymidylat 96.6 0.0032 1.1E-07 44.1 5.3 33 35-68 3-35 (195)
103 1cr0_A DNA primase/helicase; R 96.6 0.0027 9.2E-08 48.0 5.0 40 31-71 35-74 (296)
104 2gks_A Bifunctional SAT/APS ki 96.6 0.0018 6.1E-08 53.7 4.3 39 31-71 372-410 (546)
105 2z0h_A DTMP kinase, thymidylat 96.6 0.0035 1.2E-07 44.1 5.3 34 35-69 3-36 (197)
106 3ec2_A DNA replication protein 96.6 0.0022 7.6E-08 44.8 4.1 39 31-70 38-76 (180)
107 3cmu_A Protein RECA, recombina 96.5 0.0072 2.4E-07 56.8 8.1 40 31-72 1427-1466(2050)
108 3t61_A Gluconokinase; PSI-biol 96.5 0.0014 4.7E-08 46.7 2.7 36 30-72 17-52 (202)
109 1x6v_B Bifunctional 3'-phospho 96.4 0.0032 1.1E-07 53.0 4.8 42 31-73 51-92 (630)
110 2axn_A 6-phosphofructo-2-kinas 96.4 0.0033 1.1E-07 51.8 4.7 40 31-71 34-73 (520)
111 3do6_A Formate--tetrahydrofola 96.4 0.0037 1.3E-07 50.6 4.9 74 9-86 20-97 (543)
112 1nn5_A Similar to deoxythymidy 96.4 0.0039 1.3E-07 44.5 4.6 37 31-69 9-45 (215)
113 1m8p_A Sulfate adenylyltransfe 96.4 0.0029 9.8E-08 52.7 4.3 38 33-71 397-435 (573)
114 2qgz_A Helicase loader, putati 96.3 0.0038 1.3E-07 47.8 4.6 37 32-70 153-190 (308)
115 2plr_A DTMP kinase, probable t 96.3 0.005 1.7E-07 43.7 4.9 34 34-69 6-39 (213)
116 3c8u_A Fructokinase; YP_612366 96.2 0.01 3.4E-07 42.5 6.0 40 31-72 22-61 (208)
117 1v5w_A DMC1, meiotic recombina 96.2 0.0054 1.9E-07 47.7 4.8 40 33-72 123-167 (343)
118 4a0g_A Adenosylmethionine-8-am 96.2 0.0057 2E-07 53.1 5.3 41 27-68 30-75 (831)
119 1sq5_A Pantothenate kinase; P- 96.2 0.0054 1.9E-07 46.9 4.6 43 29-73 78-122 (308)
120 2f1r_A Molybdopterin-guanine d 96.2 0.0039 1.3E-07 43.8 3.5 39 31-71 2-40 (171)
121 3e2i_A Thymidine kinase; Zn-bi 96.2 0.0059 2E-07 44.6 4.5 36 33-69 29-64 (219)
122 1gvn_B Zeta; postsegregational 96.1 0.0036 1.2E-07 47.5 3.3 38 31-72 32-69 (287)
123 1nlf_A Regulatory protein REPA 96.1 0.0071 2.4E-07 45.4 4.9 39 31-71 30-78 (279)
124 1qhx_A CPT, protein (chloramph 96.1 0.0031 1.1E-07 43.7 2.7 33 34-70 5-37 (178)
125 2wwf_A Thymidilate kinase, put 96.1 0.0076 2.6E-07 42.9 4.7 36 31-68 10-45 (212)
126 2ehv_A Hypothetical protein PH 96.1 0.012 4E-07 42.9 5.8 39 31-71 30-69 (251)
127 1g8f_A Sulfate adenylyltransfe 96.0 0.0056 1.9E-07 50.3 4.3 39 33-71 396-435 (511)
128 2i1q_A DNA repair and recombin 96.0 0.0041 1.4E-07 47.7 3.2 40 33-72 99-153 (322)
129 1n0w_A DNA repair protein RAD5 96.0 0.007 2.4E-07 43.9 4.3 41 31-72 24-69 (243)
130 3tqc_A Pantothenate kinase; bi 95.9 0.01 3.5E-07 45.9 5.1 42 31-73 92-134 (321)
131 3lw7_A Adenylate kinase relate 95.9 0.0057 2E-07 41.8 3.4 29 34-67 3-31 (179)
132 3trf_A Shikimate kinase, SK; a 95.9 0.0064 2.2E-07 42.4 3.7 34 31-71 5-38 (185)
133 4edh_A DTMP kinase, thymidylat 95.9 0.013 4.5E-07 42.5 5.2 36 33-69 7-42 (213)
134 1l8q_A Chromosomal replication 95.9 0.009 3.1E-07 45.7 4.5 39 31-71 37-75 (324)
135 1ly1_A Polynucleotide kinase; 95.9 0.0066 2.3E-07 41.9 3.5 35 32-71 2-36 (181)
136 1qf9_A UMP/CMP kinase, protein 95.8 0.0076 2.6E-07 42.0 3.7 25 31-56 6-30 (194)
137 2r2a_A Uncharacterized protein 95.8 0.006 2.1E-07 43.9 3.2 38 32-70 5-48 (199)
138 1jbk_A CLPB protein; beta barr 95.8 0.012 4E-07 40.6 4.6 39 31-70 43-87 (195)
139 3e1s_A Exodeoxyribonuclease V, 95.7 0.013 4.6E-07 48.7 5.2 33 34-67 206-238 (574)
140 3hjn_A DTMP kinase, thymidylat 95.6 0.018 6.2E-07 41.1 5.1 33 36-69 4-36 (197)
141 2p5t_B PEZT; postsegregational 95.6 0.0056 1.9E-07 45.4 2.4 39 31-73 31-69 (253)
142 1odf_A YGR205W, hypothetical 3 95.6 0.0085 2.9E-07 45.6 3.4 42 30-73 30-74 (290)
143 2obn_A Hypothetical protein; s 95.6 0.039 1.3E-06 43.1 7.2 38 30-68 151-188 (349)
144 2rhm_A Putative kinase; P-loop 95.6 0.01 3.6E-07 41.5 3.7 24 33-56 6-29 (193)
145 1gtv_A TMK, thymidylate kinase 95.6 0.0032 1.1E-07 45.0 0.9 34 35-69 3-36 (214)
146 4fcw_A Chaperone protein CLPB; 95.5 0.015 5.2E-07 43.8 4.7 38 34-72 49-86 (311)
147 3kb2_A SPBC2 prophage-derived 95.5 0.011 3.6E-07 40.6 3.4 32 34-71 3-34 (173)
148 4b3f_X DNA-binding protein smu 95.5 0.017 5.7E-07 48.7 5.2 35 34-69 207-241 (646)
149 2p65_A Hypothetical protein PF 95.5 0.011 3.8E-07 40.7 3.4 37 31-69 43-86 (187)
150 3d3q_A TRNA delta(2)-isopenten 95.4 0.014 4.9E-07 45.4 4.3 35 32-72 7-41 (340)
151 1zuh_A Shikimate kinase; alpha 95.4 0.012 4.2E-07 40.4 3.5 35 30-71 6-40 (168)
152 1tev_A UMP-CMP kinase; ploop, 95.4 0.014 4.6E-07 40.8 3.7 24 33-56 4-27 (196)
153 2ze6_A Isopentenyl transferase 95.4 0.01 3.5E-07 44.0 3.2 32 34-71 3-34 (253)
154 3vaa_A Shikimate kinase, SK; s 95.3 0.015 5.1E-07 41.3 3.7 25 31-56 25-49 (199)
155 1ukz_A Uridylate kinase; trans 95.3 0.016 5.4E-07 41.1 3.8 35 29-70 13-47 (203)
156 1knq_A Gluconate kinase; ALFA/ 95.2 0.02 6.8E-07 39.5 4.1 35 31-72 8-42 (175)
157 3n70_A Transport activator; si 95.2 0.0078 2.7E-07 40.6 1.9 34 36-71 28-61 (145)
158 2cdn_A Adenylate kinase; phosp 95.2 0.016 5.6E-07 41.0 3.7 25 32-56 20-44 (201)
159 2qby_B CDC6 homolog 3, cell di 95.2 0.016 5.5E-07 44.9 3.9 36 34-70 47-90 (384)
160 3upu_A ATP-dependent DNA helic 95.2 0.026 9E-07 45.4 5.2 35 34-69 47-82 (459)
161 3lv8_A DTMP kinase, thymidylat 95.1 0.022 7.5E-07 42.0 4.3 36 31-68 27-63 (236)
162 1s1m_A CTP synthase; CTP synth 95.1 0.028 9.7E-07 46.4 5.3 41 31-72 3-44 (545)
163 2orv_A Thymidine kinase; TP4A 95.1 0.037 1.3E-06 40.7 5.3 38 31-69 18-55 (234)
164 2grj_A Dephospho-COA kinase; T 95.0 0.015 5.2E-07 41.4 3.1 35 32-72 12-46 (192)
165 2jeo_A Uridine-cytidine kinase 95.0 0.026 8.7E-07 41.5 4.4 41 31-72 25-69 (245)
166 3v9p_A DTMP kinase, thymidylat 95.0 0.021 7.3E-07 41.8 3.8 36 33-69 26-65 (227)
167 4ag6_A VIRB4 ATPase, type IV s 95.0 0.022 7.5E-07 44.8 4.2 35 37-72 40-74 (392)
168 2iyv_A Shikimate kinase, SK; t 95.0 0.011 3.9E-07 41.1 2.3 31 35-71 5-35 (184)
169 3cm0_A Adenylate kinase; ATP-b 94.9 0.026 8.8E-07 39.2 4.1 23 34-56 6-28 (186)
170 3crm_A TRNA delta(2)-isopenten 94.9 0.015 5.2E-07 44.9 3.1 35 31-71 4-38 (323)
171 3aez_A Pantothenate kinase; tr 94.9 0.042 1.4E-06 42.2 5.5 42 30-72 89-131 (312)
172 2v1u_A Cell division control p 94.9 0.02 7E-07 44.2 3.7 39 31-71 44-88 (387)
173 3jvv_A Twitching mobility prot 94.9 0.19 6.4E-06 39.3 9.2 37 31-68 123-159 (356)
174 1fnn_A CDC6P, cell division co 94.9 0.041 1.4E-06 42.6 5.4 38 33-72 46-84 (389)
175 3a8t_A Adenylate isopentenyltr 94.9 0.034 1.2E-06 43.2 4.8 34 34-73 42-75 (339)
176 2z4s_A Chromosomal replication 94.8 0.021 7.3E-07 45.8 3.8 38 32-71 131-170 (440)
177 3asz_A Uridine kinase; cytidin 94.8 0.026 9.1E-07 40.1 3.9 38 31-73 6-43 (211)
178 3t15_A Ribulose bisphosphate c 94.8 0.02 6.7E-07 43.4 3.3 32 34-69 38-69 (293)
179 2qby_A CDC6 homolog 1, cell di 94.8 0.019 6.5E-07 44.3 3.2 38 31-70 45-85 (386)
180 1uf9_A TT1252 protein; P-loop, 94.8 0.022 7.4E-07 40.1 3.3 36 28-71 5-40 (203)
181 1bif_A 6-phosphofructo-2-kinas 94.7 0.033 1.1E-06 45.0 4.6 39 31-70 38-76 (469)
182 1w5s_A Origin recognition comp 94.7 0.036 1.2E-06 43.3 4.7 38 33-71 51-96 (412)
183 4tmk_A Protein (thymidylate ki 94.6 0.038 1.3E-06 40.0 4.4 36 31-68 3-39 (213)
184 2vhj_A Ntpase P4, P4; non- hyd 94.6 0.013 4.3E-07 45.5 1.8 34 31-69 123-156 (331)
185 3syl_A Protein CBBX; photosynt 94.6 0.033 1.1E-06 42.0 4.2 38 31-70 67-108 (309)
186 2bjv_A PSP operon transcriptio 94.6 0.021 7.1E-07 42.3 3.0 36 36-72 33-68 (265)
187 1pzn_A RAD51, DNA repair and r 94.6 0.027 9.2E-07 43.9 3.7 41 31-72 131-176 (349)
188 1e6c_A Shikimate kinase; phosp 94.6 0.019 6.6E-07 39.4 2.6 34 31-71 2-35 (173)
189 2v54_A DTMP kinase, thymidylat 94.6 0.024 8.1E-07 40.0 3.1 36 31-70 4-39 (204)
190 3lda_A DNA repair protein RAD5 94.6 0.027 9.2E-07 44.8 3.7 41 31-72 178-223 (400)
191 3umf_A Adenylate kinase; rossm 94.6 0.041 1.4E-06 40.1 4.4 26 30-56 28-53 (217)
192 2chg_A Replication factor C sm 94.6 0.014 4.8E-07 41.2 1.9 35 35-70 41-77 (226)
193 2g0t_A Conserved hypothetical 94.5 0.14 4.6E-06 40.1 7.5 39 30-69 168-206 (350)
194 4a74_A DNA repair and recombin 94.5 0.027 9.2E-07 40.4 3.3 40 31-71 25-69 (231)
195 2c95_A Adenylate kinase 1; tra 94.5 0.022 7.6E-07 39.8 2.8 25 31-56 9-33 (196)
196 3iij_A Coilin-interacting nucl 94.5 0.025 8.7E-07 39.2 3.1 25 31-56 11-35 (180)
197 1aky_A Adenylate kinase; ATP:A 94.4 0.027 9.4E-07 40.4 3.3 25 31-56 4-28 (220)
198 2jaq_A Deoxyguanosine kinase; 94.4 0.032 1.1E-06 39.2 3.5 22 36-57 4-25 (205)
199 2bwj_A Adenylate kinase 5; pho 94.4 0.027 9.3E-07 39.5 3.0 25 31-56 12-36 (199)
200 2pt5_A Shikimate kinase, SK; a 94.3 0.035 1.2E-06 37.9 3.5 22 35-56 3-24 (168)
201 2vli_A Antibiotic resistance p 94.3 0.02 6.9E-07 39.6 2.3 25 31-56 5-29 (183)
202 3tlx_A Adenylate kinase 2; str 94.3 0.043 1.5E-06 40.3 4.1 24 33-56 30-53 (243)
203 1via_A Shikimate kinase; struc 94.3 0.028 9.5E-07 38.8 2.9 34 31-71 4-37 (175)
204 4hlc_A DTMP kinase, thymidylat 94.3 0.064 2.2E-06 38.5 4.9 31 36-68 6-36 (205)
205 1kag_A SKI, shikimate kinase I 94.2 0.021 7.1E-07 39.2 2.1 33 32-71 5-37 (173)
206 1tf7_A KAIC; homohexamer, hexa 94.2 0.053 1.8E-06 44.4 4.9 39 31-71 281-319 (525)
207 3foz_A TRNA delta(2)-isopenten 94.2 0.037 1.3E-06 42.6 3.6 35 31-71 9-43 (316)
208 3ld9_A DTMP kinase, thymidylat 94.1 0.032 1.1E-06 40.8 3.0 42 31-73 21-62 (223)
209 4eaq_A DTMP kinase, thymidylat 94.1 0.076 2.6E-06 38.7 5.1 35 31-68 26-60 (229)
210 3fb4_A Adenylate kinase; psych 94.0 0.042 1.4E-06 39.2 3.5 21 36-56 4-24 (216)
211 1ak2_A Adenylate kinase isoenz 94.0 0.051 1.7E-06 39.5 3.9 26 30-56 15-40 (233)
212 2eyu_A Twitching motility prot 93.9 0.11 3.7E-06 38.7 5.7 39 31-70 25-63 (261)
213 1w36_D RECD, exodeoxyribonucle 93.9 0.065 2.2E-06 44.8 4.9 35 33-67 165-202 (608)
214 2f6r_A COA synthase, bifunctio 93.8 0.043 1.5E-06 41.3 3.4 35 29-71 73-107 (281)
215 3exa_A TRNA delta(2)-isopenten 93.8 0.041 1.4E-06 42.5 3.2 32 34-71 5-36 (322)
216 1zp6_A Hypothetical protein AT 93.8 0.042 1.4E-06 38.3 3.1 36 31-71 9-44 (191)
217 1w78_A FOLC bifunctional prote 93.8 0.11 3.8E-06 41.3 5.8 37 27-67 45-81 (422)
218 3cr8_A Sulfate adenylyltranfer 93.8 0.031 1.1E-06 46.3 2.7 40 31-71 369-408 (552)
219 1ltq_A Polynucleotide kinase; 93.7 0.048 1.7E-06 41.0 3.5 34 32-70 2-35 (301)
220 3tau_A Guanylate kinase, GMP k 93.7 0.052 1.8E-06 38.8 3.5 25 31-56 8-32 (208)
221 2c5m_A CTP synthase; cytidine 93.7 0.078 2.7E-06 39.6 4.3 42 31-73 23-65 (294)
222 2ewv_A Twitching motility prot 93.7 0.1 3.5E-06 41.0 5.3 38 30-69 135-173 (372)
223 3be4_A Adenylate kinase; malar 93.6 0.034 1.2E-06 39.9 2.4 25 31-56 5-29 (217)
224 4eun_A Thermoresistant glucoki 93.6 0.05 1.7E-06 38.5 3.2 35 31-72 29-63 (200)
225 3ake_A Cytidylate kinase; CMP 93.6 0.045 1.5E-06 38.6 3.0 23 33-56 4-26 (208)
226 1y63_A LMAJ004144AAA protein; 93.6 0.056 1.9E-06 37.8 3.4 34 31-70 10-43 (184)
227 2gk6_A Regulator of nonsense t 93.5 0.086 2.9E-06 44.2 4.9 36 34-69 197-232 (624)
228 3eph_A TRNA isopentenyltransfe 93.4 0.38 1.3E-05 38.3 8.2 32 34-71 4-35 (409)
229 2a5y_B CED-4; apoptosis; HET: 93.4 0.058 2E-06 44.4 3.7 24 30-54 151-174 (549)
230 2if2_A Dephospho-COA kinase; a 93.4 0.048 1.6E-06 38.5 2.8 22 32-54 2-23 (204)
231 2bdt_A BH3686; alpha-beta prot 93.3 0.069 2.4E-06 37.2 3.5 21 34-54 4-24 (189)
232 2qor_A Guanylate kinase; phosp 93.3 0.038 1.3E-06 39.3 2.2 25 31-56 12-36 (204)
233 3dl0_A Adenylate kinase; phosp 93.3 0.049 1.7E-06 38.9 2.8 21 36-56 4-24 (216)
234 2xb4_A Adenylate kinase; ATP-b 93.3 0.067 2.3E-06 38.6 3.5 22 35-56 3-24 (223)
235 1c9k_A COBU, adenosylcobinamid 93.3 0.046 1.6E-06 38.6 2.5 31 36-71 3-33 (180)
236 1zak_A Adenylate kinase; ATP:A 93.3 0.039 1.3E-06 39.7 2.2 25 31-56 5-29 (222)
237 1jbw_A Folylpolyglutamate synt 93.3 0.12 4E-06 41.2 5.2 36 29-68 37-72 (428)
238 1zd8_A GTP:AMP phosphotransfer 93.2 0.043 1.5E-06 39.6 2.3 25 31-56 7-31 (227)
239 1w4r_A Thymidine kinase; type 93.1 0.15 5.1E-06 36.5 5.0 38 31-70 20-57 (195)
240 1ofh_A ATP-dependent HSL prote 93.0 0.12 4E-06 38.7 4.6 36 31-71 50-85 (310)
241 3bs4_A Uncharacterized protein 92.9 0.15 5.1E-06 38.1 5.0 41 31-73 21-61 (260)
242 3r20_A Cytidylate kinase; stru 92.9 0.072 2.5E-06 39.2 3.1 24 33-56 10-33 (233)
243 2qz4_A Paraplegin; AAA+, SPG7, 92.9 0.15 5E-06 37.3 4.9 35 32-71 40-74 (262)
244 2wjy_A Regulator of nonsense t 92.8 0.12 4.2E-06 44.6 5.0 35 34-68 373-407 (800)
245 1njg_A DNA polymerase III subu 92.8 0.092 3.1E-06 37.3 3.6 25 34-58 47-71 (250)
246 1jjv_A Dephospho-COA kinase; P 92.8 0.079 2.7E-06 37.5 3.2 32 32-71 3-34 (206)
247 4e22_A Cytidylate kinase; P-lo 92.7 0.084 2.9E-06 38.9 3.4 26 30-56 26-51 (252)
248 3ney_A 55 kDa erythrocyte memb 92.7 0.089 3E-06 37.7 3.4 25 31-56 19-43 (197)
249 1e4v_A Adenylate kinase; trans 92.7 0.074 2.5E-06 38.0 3.0 21 36-56 4-24 (214)
250 3tr0_A Guanylate kinase, GMP k 92.7 0.09 3.1E-06 37.0 3.4 25 31-56 7-31 (205)
251 1e9r_A Conjugal transfer prote 92.7 0.13 4.6E-06 40.8 4.7 32 38-70 59-90 (437)
252 2rdo_7 EF-G, elongation factor 92.6 0.14 4.8E-06 43.6 5.0 25 30-55 9-33 (704)
253 1cke_A CK, MSSA, protein (cyti 92.6 0.096 3.3E-06 37.5 3.5 24 32-56 6-29 (227)
254 1kgd_A CASK, peripheral plasma 92.6 0.088 3E-06 36.6 3.2 25 31-56 5-29 (180)
255 1o5z_A Folylpolyglutamate synt 92.4 0.15 5.2E-06 40.8 4.7 35 30-68 51-85 (442)
256 3te6_A Regulatory protein SIR3 92.4 0.11 3.9E-06 39.9 3.8 40 31-71 45-90 (318)
257 2bbw_A Adenylate kinase 4, AK4 92.4 0.11 3.6E-06 38.0 3.5 25 31-56 27-51 (246)
258 3u61_B DNA polymerase accessor 92.3 0.12 4.1E-06 39.2 3.9 37 31-71 47-83 (324)
259 1sxj_A Activator 1 95 kDa subu 92.3 0.14 4.7E-06 41.9 4.4 35 32-71 78-112 (516)
260 1ojl_A Transcriptional regulat 92.2 0.062 2.1E-06 40.9 2.1 34 37-71 30-63 (304)
261 3pxi_A Negative regulator of g 92.1 0.2 7E-06 42.8 5.5 38 33-72 523-560 (758)
262 1vht_A Dephospho-COA kinase; s 92.1 0.13 4.3E-06 36.8 3.6 30 34-70 6-35 (218)
263 1e8c_A UDP-N-acetylmuramoylala 91.9 0.23 7.9E-06 40.4 5.3 35 30-68 107-141 (498)
264 3nrs_A Dihydrofolate:folylpoly 91.9 0.29 9.9E-06 39.1 5.8 37 28-68 49-85 (437)
265 1tue_A Replication protein E1; 91.9 0.081 2.8E-06 38.3 2.3 22 35-56 61-82 (212)
266 3sr0_A Adenylate kinase; phosp 91.9 0.13 4.5E-06 36.9 3.5 21 36-56 4-24 (206)
267 3zvl_A Bifunctional polynucleo 91.9 0.079 2.7E-06 42.2 2.5 36 31-72 257-292 (416)
268 2xzl_A ATP-dependent helicase 91.8 0.16 5.6E-06 43.9 4.5 37 34-70 377-413 (802)
269 2qt1_A Nicotinamide riboside k 91.8 0.11 3.6E-06 36.9 2.9 36 31-72 21-56 (207)
270 3ch4_B Pmkase, phosphomevalona 91.7 0.14 4.8E-06 36.8 3.4 25 31-56 11-35 (202)
271 1d2n_A N-ethylmaleimide-sensit 91.6 0.21 7.2E-06 36.9 4.4 35 31-69 63-97 (272)
272 2fna_A Conserved hypothetical 91.5 0.13 4.5E-06 39.0 3.4 34 34-71 32-65 (357)
273 2wtz_A UDP-N-acetylmuramoyl-L- 91.5 0.28 9.5E-06 40.3 5.4 36 30-69 145-180 (535)
274 2vos_A Folylpolyglutamate synt 91.5 0.26 8.9E-06 40.0 5.2 35 29-67 62-96 (487)
275 4dqx_A Probable oxidoreductase 91.5 0.17 5.8E-06 37.8 3.8 36 30-71 26-61 (277)
276 2j41_A Guanylate kinase; GMP, 91.5 0.12 4.3E-06 36.2 2.9 25 31-56 6-30 (207)
277 3eag_A UDP-N-acetylmuramate:L- 91.4 0.22 7.7E-06 38.1 4.5 31 31-65 108-138 (326)
278 1um8_A ATP-dependent CLP prote 91.4 0.19 6.4E-06 39.1 4.1 35 32-71 73-107 (376)
279 1qvr_A CLPB protein; coiled co 91.3 0.23 7.9E-06 43.1 4.9 39 34-73 590-628 (854)
280 1sxj_C Activator 1 40 kDa subu 91.3 0.084 2.9E-06 40.5 2.0 36 35-71 49-84 (340)
281 2npi_A Protein CLP1; CLP1-PCF1 91.2 0.1 3.5E-06 42.2 2.5 41 31-72 138-178 (460)
282 1z6t_A APAF-1, apoptotic prote 91.2 0.16 5.3E-06 41.9 3.6 41 30-71 146-189 (591)
283 1xwi_A SKD1 protein; VPS4B, AA 91.1 0.25 8.4E-06 37.8 4.5 36 31-70 45-80 (322)
284 1p9r_A General secretion pathw 91.1 0.2 6.9E-06 40.0 4.0 39 31-71 167-205 (418)
285 3vtz_A Glucose 1-dehydrogenase 91.1 0.18 6.1E-06 37.4 3.6 41 27-73 10-50 (269)
286 3pxg_A Negative regulator of g 91.0 0.17 5.7E-06 40.9 3.5 35 36-70 205-245 (468)
287 3hdt_A Putative kinase; struct 90.9 0.19 6.4E-06 36.6 3.4 25 33-57 15-39 (223)
288 1lvg_A Guanylate kinase, GMP k 90.7 0.16 5.6E-06 35.9 2.9 26 31-57 4-29 (198)
289 3h4m_A Proteasome-activating n 90.6 0.14 4.8E-06 38.0 2.6 35 31-70 51-85 (285)
290 3orf_A Dihydropteridine reduct 90.6 0.22 7.6E-06 36.4 3.7 40 28-73 19-58 (251)
291 2ocp_A DGK, deoxyguanosine kin 90.6 0.14 4.8E-06 37.2 2.6 25 31-56 2-26 (241)
292 3kta_A Chromosome segregation 90.6 0.27 9.2E-06 33.9 3.9 25 34-58 28-52 (182)
293 3ice_A Transcription terminati 90.5 0.23 7.7E-06 39.6 3.8 31 30-62 173-203 (422)
294 1ex7_A Guanylate kinase; subst 90.5 0.19 6.7E-06 35.5 3.1 22 35-56 4-25 (186)
295 1nij_A Hypothetical protein YJ 90.5 0.2 6.8E-06 38.3 3.4 39 31-73 4-42 (318)
296 1lv7_A FTSH; alpha/beta domain 90.4 0.2 6.8E-06 36.7 3.3 33 33-70 47-79 (257)
297 2c9o_A RUVB-like 1; hexameric 90.4 0.23 7.9E-06 39.9 3.9 35 32-69 64-98 (456)
298 3nva_A CTP synthase; rossman f 90.1 0.52 1.8E-05 38.7 5.7 42 31-73 3-45 (535)
299 1in4_A RUVB, holliday junction 90.1 0.2 7E-06 38.4 3.2 24 32-56 52-75 (334)
300 1q3t_A Cytidylate kinase; nucl 90.1 0.23 7.8E-06 36.0 3.3 25 31-56 16-40 (236)
301 3a00_A Guanylate kinase, GMP k 90.1 0.15 5.2E-06 35.5 2.3 24 33-57 3-26 (186)
302 1iqp_A RFCS; clamp loader, ext 90.0 0.096 3.3E-06 39.5 1.2 34 35-69 49-84 (327)
303 1hqc_A RUVB; extended AAA-ATPa 89.9 0.37 1.3E-05 36.2 4.5 35 32-71 39-73 (324)
304 4imr_A 3-oxoacyl-(acyl-carrier 89.9 0.25 8.4E-06 36.8 3.4 39 29-73 31-69 (275)
305 3hws_A ATP-dependent CLP prote 89.8 0.27 9.2E-06 38.1 3.7 35 31-70 51-85 (363)
306 1qvr_A CLPB protein; coiled co 89.8 0.32 1.1E-05 42.2 4.4 36 36-71 195-236 (854)
307 2qmh_A HPR kinase/phosphorylas 89.7 0.26 9E-06 35.4 3.3 23 31-54 34-56 (205)
308 2h92_A Cytidylate kinase; ross 89.6 0.15 5.3E-06 36.2 2.0 23 34-56 5-27 (219)
309 1ye8_A Protein THEP1, hypothet 89.6 0.31 1.1E-05 34.0 3.5 23 34-57 3-25 (178)
310 3fdi_A Uncharacterized protein 89.5 0.16 5.6E-06 36.1 2.1 24 34-57 8-31 (201)
311 3nwj_A ATSK2; P loop, shikimat 89.5 0.22 7.6E-06 36.9 2.9 34 31-71 48-81 (250)
312 2x5o_A UDP-N-acetylmuramoylala 89.4 0.53 1.8E-05 37.6 5.2 33 31-67 104-136 (439)
313 3d8b_A Fidgetin-like protein 1 89.4 0.36 1.2E-05 37.4 4.1 35 31-70 117-151 (357)
314 3uk6_A RUVB-like 2; hexameric 89.4 0.21 7E-06 38.5 2.7 26 32-58 71-96 (368)
315 1s96_A Guanylate kinase, GMP k 89.4 0.25 8.5E-06 35.8 3.0 25 31-56 16-40 (219)
316 1z6g_A Guanylate kinase; struc 89.3 0.21 7.3E-06 35.9 2.6 25 31-56 23-47 (218)
317 3b9p_A CG5977-PA, isoform A; A 89.3 0.2 7E-06 37.4 2.6 35 31-70 54-88 (297)
318 1sxj_B Activator 1 37 kDa subu 89.3 0.14 4.8E-06 38.4 1.7 35 35-70 45-81 (323)
319 2r62_A Cell division protease 89.3 0.18 6.2E-06 37.0 2.3 22 35-56 47-68 (268)
320 4b4t_K 26S protease regulatory 89.3 0.46 1.6E-05 38.1 4.7 35 31-70 206-240 (428)
321 3lfu_A DNA helicase II; SF1 he 89.2 0.33 1.1E-05 40.4 4.0 33 37-70 27-63 (647)
322 3hn7_A UDP-N-acetylmuramate-L- 89.2 0.41 1.4E-05 39.2 4.5 32 30-65 121-152 (524)
323 1p3d_A UDP-N-acetylmuramate--a 89.2 0.58 2E-05 37.7 5.3 38 31-72 118-156 (475)
324 3ged_A Short-chain dehydrogena 89.1 0.29 9.8E-06 36.2 3.2 35 31-71 2-36 (247)
325 3guy_A Short-chain dehydrogena 89.0 0.22 7.6E-06 35.7 2.5 35 31-71 1-35 (230)
326 1fjh_A 3alpha-hydroxysteroid d 89.0 0.34 1.2E-05 35.2 3.6 36 31-72 1-36 (257)
327 1htw_A HI0065; nucleotide-bind 89.0 0.38 1.3E-05 32.9 3.6 25 31-56 33-57 (158)
328 3l6e_A Oxidoreductase, short-c 89.0 0.31 1.1E-05 35.3 3.3 35 31-71 3-37 (235)
329 1o5i_A 3-oxoacyl-(acyl carrier 88.9 0.37 1.3E-05 35.2 3.7 39 27-71 15-53 (249)
330 1zmt_A Haloalcohol dehalogenas 88.9 0.27 9.3E-06 35.9 3.0 36 31-72 1-36 (254)
331 1rif_A DAR protein, DNA helica 88.8 0.48 1.6E-05 35.2 4.4 31 36-67 132-163 (282)
332 1dek_A Deoxynucleoside monopho 88.8 0.36 1.2E-05 35.6 3.6 23 32-55 2-24 (241)
333 3gvc_A Oxidoreductase, probabl 88.8 0.36 1.2E-05 36.0 3.6 36 30-71 28-63 (277)
334 3eie_A Vacuolar protein sortin 88.7 0.3 1E-05 37.2 3.2 34 31-69 51-84 (322)
335 1ixz_A ATP-dependent metallopr 88.6 0.27 9.1E-06 35.9 2.8 22 34-56 52-73 (254)
336 1sxj_D Activator 1 41 kDa subu 88.6 0.31 1.1E-05 37.1 3.2 35 35-69 61-97 (353)
337 3tzq_B Short-chain type dehydr 88.6 0.4 1.4E-05 35.4 3.8 36 31-72 11-46 (271)
338 2vp4_A Deoxynucleoside kinase; 88.6 0.31 1.1E-05 35.2 3.0 35 30-70 19-53 (230)
339 3gem_A Short chain dehydrogena 88.5 0.25 8.4E-06 36.5 2.5 38 29-72 25-62 (260)
340 4b79_A PA4098, probable short- 88.5 0.4 1.4E-05 35.4 3.6 36 31-72 11-46 (242)
341 1jr3_A DNA polymerase III subu 88.5 0.35 1.2E-05 37.1 3.5 25 34-58 40-64 (373)
342 1j6u_A UDP-N-acetylmuramate-al 88.5 0.52 1.8E-05 38.0 4.6 37 31-71 114-151 (469)
343 2f00_A UDP-N-acetylmuramate--L 88.5 0.68 2.3E-05 37.5 5.3 38 31-72 119-157 (491)
344 3lk7_A UDP-N-acetylmuramoylala 88.5 0.74 2.5E-05 36.9 5.5 32 31-66 112-143 (451)
345 4b4t_L 26S protease subunit RP 88.5 0.56 1.9E-05 37.7 4.7 35 31-70 215-249 (437)
346 2i3b_A HCR-ntpase, human cance 88.4 0.4 1.4E-05 33.8 3.4 27 33-61 3-29 (189)
347 3cf0_A Transitional endoplasmi 88.3 0.27 9.2E-06 37.1 2.7 33 31-68 49-81 (301)
348 1vt4_I APAF-1 related killer D 88.3 0.54 1.8E-05 42.2 4.8 41 31-72 150-192 (1221)
349 3tpc_A Short chain alcohol deh 88.3 0.42 1.4E-05 34.9 3.7 36 31-72 7-42 (257)
350 3uf0_A Short-chain dehydrogena 88.3 0.41 1.4E-05 35.6 3.6 34 29-68 29-62 (273)
351 3p19_A BFPVVD8, putative blue 88.2 0.36 1.2E-05 35.7 3.3 36 30-71 15-50 (266)
352 2zan_A Vacuolar protein sortin 88.1 0.48 1.7E-05 37.9 4.2 36 31-70 167-202 (444)
353 3pxx_A Carveol dehydrogenase; 88.1 0.39 1.3E-05 35.6 3.4 35 31-71 10-44 (287)
354 2qp9_X Vacuolar protein sortin 88.0 0.35 1.2E-05 37.5 3.2 33 32-69 85-117 (355)
355 3rwb_A TPLDH, pyridoxal 4-dehy 87.9 0.4 1.4E-05 34.9 3.3 35 31-71 6-40 (247)
356 3i1j_A Oxidoreductase, short c 87.8 0.37 1.3E-05 34.8 3.1 36 30-71 13-48 (247)
357 3un1_A Probable oxidoreductase 87.7 0.45 1.5E-05 35.0 3.5 38 30-73 27-64 (260)
358 3tmk_A Thymidylate kinase; pho 87.7 0.37 1.3E-05 34.9 3.0 27 31-58 5-31 (216)
359 3qiv_A Short-chain dehydrogena 87.7 0.44 1.5E-05 34.6 3.4 36 30-71 8-43 (253)
360 3sfz_A APAF-1, apoptotic pepti 87.7 0.33 1.1E-05 43.2 3.2 42 29-71 145-189 (1249)
361 3sx2_A Putative 3-ketoacyl-(ac 87.7 0.43 1.5E-05 35.3 3.4 36 30-71 12-47 (278)
362 3f1l_A Uncharacterized oxidore 87.7 0.44 1.5E-05 34.8 3.4 35 31-71 12-46 (252)
363 3vfd_A Spastin; ATPase, microt 87.7 0.69 2.4E-05 36.1 4.8 36 31-71 148-183 (389)
364 2dyk_A GTP-binding protein; GT 87.6 0.49 1.7E-05 31.3 3.5 21 32-53 2-22 (161)
365 1dhr_A Dihydropteridine reduct 87.6 0.48 1.6E-05 34.3 3.6 37 31-73 7-43 (241)
366 3f9i_A 3-oxoacyl-[acyl-carrier 87.6 0.43 1.5E-05 34.5 3.4 39 27-71 10-48 (249)
367 3ijr_A Oxidoreductase, short c 87.6 0.73 2.5E-05 34.5 4.7 37 30-72 46-82 (291)
368 3l77_A Short-chain alcohol deh 87.6 0.45 1.6E-05 34.1 3.4 35 31-71 2-36 (235)
369 3tqf_A HPR(Ser) kinase; transf 87.6 0.3 1E-05 34.4 2.3 28 31-64 16-43 (181)
370 3t7c_A Carveol dehydrogenase; 87.6 0.43 1.5E-05 35.8 3.4 36 30-71 27-62 (299)
371 1ooe_A Dihydropteridine reduct 87.6 0.48 1.6E-05 34.1 3.6 37 31-73 3-39 (236)
372 3pfi_A Holliday junction ATP-d 87.5 0.66 2.3E-05 35.2 4.5 32 36-71 59-90 (338)
373 3oec_A Carveol dehydrogenase ( 87.5 0.52 1.8E-05 35.8 3.8 38 30-73 45-82 (317)
374 4e6p_A Probable sorbitol dehyd 87.5 0.46 1.6E-05 34.8 3.4 35 31-71 8-42 (259)
375 3dii_A Short-chain dehydrogena 87.4 0.43 1.5E-05 34.7 3.2 35 31-71 2-36 (247)
376 2ekp_A 2-deoxy-D-gluconate 3-d 87.4 0.47 1.6E-05 34.2 3.4 36 31-72 2-37 (239)
377 2ce2_X GTPase HRAS; signaling 87.4 0.44 1.5E-05 31.5 3.1 21 33-54 5-25 (166)
378 1p5z_B DCK, deoxycytidine kina 87.3 0.12 4.2E-06 38.1 0.2 26 30-56 23-48 (263)
379 3pxi_A Negative regulator of g 87.3 0.42 1.4E-05 40.8 3.5 23 36-58 205-227 (758)
380 2ga8_A Hypothetical 39.9 kDa p 87.3 0.69 2.4E-05 36.2 4.5 26 32-58 25-50 (359)
381 1znw_A Guanylate kinase, GMP k 87.3 0.41 1.4E-05 33.9 3.0 25 31-56 20-44 (207)
382 3uxy_A Short-chain dehydrogena 87.3 0.4 1.4E-05 35.5 3.0 38 30-73 27-64 (266)
383 4hv4_A UDP-N-acetylmuramate--L 87.2 0.8 2.7E-05 37.2 5.0 35 31-69 122-157 (494)
384 1of1_A Thymidine kinase; trans 87.2 0.59 2E-05 36.8 4.0 27 34-61 51-77 (376)
385 1r6b_X CLPA protein; AAA+, N-t 87.1 0.92 3.1E-05 38.7 5.5 35 33-72 490-524 (758)
386 1svi_A GTP-binding protein YSX 87.1 0.88 3E-05 31.2 4.6 22 31-53 23-44 (195)
387 3h7a_A Short chain dehydrogena 87.1 0.44 1.5E-05 34.9 3.1 36 31-72 7-42 (252)
388 4i1u_A Dephospho-COA kinase; s 87.1 0.34 1.1E-05 35.0 2.4 34 30-71 8-41 (210)
389 2dtx_A Glucose 1-dehydrogenase 87.1 0.59 2E-05 34.4 3.8 37 31-73 8-44 (264)
390 2d1y_A Hypothetical protein TT 87.1 0.54 1.9E-05 34.3 3.6 36 31-72 6-41 (256)
391 4eso_A Putative oxidoreductase 87.1 0.5 1.7E-05 34.6 3.4 35 31-71 8-42 (255)
392 2x8a_A Nuclear valosin-contain 87.0 0.36 1.2E-05 36.0 2.6 32 34-70 47-78 (274)
393 1sxj_E Activator 1 40 kDa subu 87.0 0.37 1.3E-05 36.8 2.8 24 35-58 39-62 (354)
394 2qen_A Walker-type ATPase; unk 87.0 0.47 1.6E-05 35.8 3.4 32 34-71 33-64 (350)
395 1iy2_A ATP-dependent metallopr 86.9 0.38 1.3E-05 35.7 2.8 22 34-56 76-97 (278)
396 3svt_A Short-chain type dehydr 86.9 0.51 1.7E-05 35.0 3.4 36 30-71 10-45 (281)
397 3vkg_A Dynein heavy chain, cyt 86.9 1.3 4.5E-05 43.9 6.9 46 38-83 912-957 (3245)
398 2ehd_A Oxidoreductase, oxidore 86.9 0.46 1.6E-05 34.0 3.1 35 31-71 5-39 (234)
399 3o26_A Salutaridine reductase; 86.7 0.43 1.5E-05 35.5 3.0 36 30-71 11-46 (311)
400 2ew8_A (S)-1-phenylethanol deh 86.7 0.56 1.9E-05 34.1 3.5 35 31-71 7-41 (249)
401 3lnc_A Guanylate kinase, GMP k 86.7 0.34 1.2E-05 34.9 2.3 25 31-56 27-52 (231)
402 1e2k_A Thymidine kinase; trans 86.7 0.5 1.7E-05 36.5 3.4 27 34-61 6-32 (331)
403 4gp7_A Metallophosphoesterase; 86.7 0.36 1.2E-05 33.2 2.3 20 31-51 9-28 (171)
404 4b4t_J 26S protease regulatory 86.7 0.46 1.6E-05 37.8 3.2 35 31-70 182-216 (405)
405 2chq_A Replication factor C sm 86.6 0.47 1.6E-05 35.4 3.1 35 35-70 41-77 (319)
406 3nyw_A Putative oxidoreductase 86.6 0.43 1.5E-05 34.8 2.9 36 30-71 6-41 (250)
407 2fwm_X 2,3-dihydro-2,3-dihydro 86.6 0.63 2.1E-05 33.9 3.7 36 31-72 7-42 (250)
408 3uve_A Carveol dehydrogenase ( 86.6 0.53 1.8E-05 34.9 3.4 35 31-71 11-45 (286)
409 4ffl_A PYLC; amino acid, biosy 86.5 1.6 5.3E-05 33.6 6.1 39 31-76 1-39 (363)
410 3v2g_A 3-oxoacyl-[acyl-carrier 86.5 0.45 1.5E-05 35.3 2.9 36 30-71 30-65 (271)
411 4b4t_M 26S protease regulatory 86.5 0.48 1.6E-05 38.0 3.2 35 31-70 215-249 (434)
412 3ucx_A Short chain dehydrogena 86.5 0.78 2.7E-05 33.7 4.2 35 31-71 11-45 (264)
413 3asu_A Short-chain dehydrogena 86.4 0.76 2.6E-05 33.5 4.1 34 32-71 1-34 (248)
414 2dkn_A 3-alpha-hydroxysteroid 86.4 0.55 1.9E-05 33.8 3.3 36 31-72 1-36 (255)
415 3ppi_A 3-hydroxyacyl-COA dehyd 86.4 0.6 2E-05 34.5 3.6 36 30-71 29-64 (281)
416 3ek2_A Enoyl-(acyl-carrier-pro 86.4 0.8 2.7E-05 33.4 4.3 38 27-70 10-49 (271)
417 2h5e_A Peptide chain release f 86.4 3.8 0.00013 33.6 8.6 24 31-55 13-36 (529)
418 4fn4_A Short chain dehydrogena 86.4 0.55 1.9E-05 34.8 3.3 35 31-71 7-41 (254)
419 3lyl_A 3-oxoacyl-(acyl-carrier 86.3 0.57 1.9E-05 33.9 3.4 35 31-71 5-39 (247)
420 4da9_A Short-chain dehydrogena 86.3 0.57 1.9E-05 34.9 3.4 34 30-69 28-61 (280)
421 3e03_A Short chain dehydrogena 86.2 0.79 2.7E-05 33.9 4.2 37 30-72 5-41 (274)
422 2pd4_A Enoyl-[acyl-carrier-pro 86.2 0.75 2.6E-05 33.9 4.1 35 31-71 6-42 (275)
423 3tfo_A Putative 3-oxoacyl-(acy 86.2 0.51 1.7E-05 34.9 3.1 35 31-71 4-38 (264)
424 2wsb_A Galactitol dehydrogenas 86.1 0.6 2.1E-05 33.7 3.4 35 31-71 11-45 (254)
425 2ae2_A Protein (tropinone redu 86.1 0.6 2.1E-05 34.1 3.4 35 31-71 9-43 (260)
426 4ehx_A Tetraacyldisaccharide 4 86.1 0.52 1.8E-05 36.1 3.1 35 31-68 36-71 (315)
427 1r6b_X CLPA protein; AAA+, N-t 86.0 0.94 3.2E-05 38.6 5.0 33 36-69 211-250 (758)
428 2vo1_A CTP synthase 1; pyrimid 86.0 1.6 5.6E-05 32.7 5.6 42 31-73 23-65 (295)
429 2l8b_A Protein TRAI, DNA helic 86.0 3 0.0001 29.5 6.8 117 31-164 50-175 (189)
430 2o23_A HADH2 protein; HSD17B10 86.0 0.69 2.4E-05 33.7 3.7 36 31-72 12-47 (265)
431 2cfc_A 2-(R)-hydroxypropyl-COM 85.9 0.63 2.2E-05 33.6 3.4 35 31-71 2-36 (250)
432 3o38_A Short chain dehydrogena 85.9 0.73 2.5E-05 33.7 3.8 36 30-71 21-57 (266)
433 2nwq_A Probable short-chain de 85.9 0.88 3E-05 33.7 4.3 34 32-71 22-55 (272)
434 1zem_A Xylitol dehydrogenase; 85.9 0.63 2.2E-05 34.1 3.4 35 31-71 7-41 (262)
435 3sc4_A Short chain dehydrogena 85.9 0.63 2.1E-05 34.7 3.5 37 30-72 8-44 (285)
436 3op4_A 3-oxoacyl-[acyl-carrier 85.9 0.54 1.9E-05 34.2 3.1 35 31-71 9-43 (248)
437 3rih_A Short chain dehydrogena 85.8 0.5 1.7E-05 35.5 2.9 37 30-72 40-76 (293)
438 3ak4_A NADH-dependent quinucli 85.8 0.64 2.2E-05 34.0 3.4 35 31-71 12-46 (263)
439 3m1a_A Putative dehydrogenase; 85.8 0.51 1.7E-05 34.9 2.9 35 31-71 5-39 (281)
440 2v9p_A Replication protein E1; 85.7 0.7 2.4E-05 35.2 3.7 25 31-56 126-150 (305)
441 4ibo_A Gluconate dehydrogenase 85.7 0.43 1.5E-05 35.4 2.5 36 30-71 25-60 (271)
442 3ioy_A Short-chain dehydrogena 85.7 0.84 2.9E-05 34.7 4.1 35 31-71 8-42 (319)
443 2qq5_A DHRS1, dehydrogenase/re 85.7 0.57 2E-05 34.2 3.1 35 31-71 5-39 (260)
444 1vl8_A Gluconate 5-dehydrogena 85.6 0.65 2.2E-05 34.2 3.4 36 30-71 20-55 (267)
445 1sny_A Sniffer CG10964-PA; alp 85.6 0.56 1.9E-05 34.2 3.1 39 28-72 18-59 (267)
446 2nm0_A Probable 3-oxacyl-(acyl 85.6 0.77 2.6E-05 33.6 3.8 37 30-72 20-56 (253)
447 3rsc_A CALG2; TDP, enediyne, s 85.5 1.5 5.2E-05 33.9 5.7 37 31-69 20-56 (415)
448 1iy8_A Levodione reductase; ox 85.5 0.67 2.3E-05 34.0 3.4 35 31-71 13-47 (267)
449 2cbz_A Multidrug resistance-as 85.5 0.51 1.7E-05 34.5 2.7 26 31-57 31-56 (237)
450 3v2h_A D-beta-hydroxybutyrate 85.5 0.56 1.9E-05 34.9 3.0 34 31-70 25-58 (281)
451 1mv5_A LMRA, multidrug resista 85.4 0.58 2E-05 34.3 3.0 34 31-66 28-61 (243)
452 3pk0_A Short-chain dehydrogena 85.4 0.56 1.9E-05 34.5 3.0 36 30-71 9-44 (262)
453 2bgk_A Rhizome secoisolaricire 85.4 0.68 2.3E-05 33.9 3.4 36 30-71 15-50 (278)
454 2pd6_A Estradiol 17-beta-dehyd 85.4 0.68 2.3E-05 33.7 3.4 35 31-71 7-41 (264)
455 1yde_A Retinal dehydrogenase/r 85.3 0.69 2.4E-05 34.2 3.4 35 31-71 9-43 (270)
456 3ftp_A 3-oxoacyl-[acyl-carrier 85.3 0.56 1.9E-05 34.7 2.9 36 30-71 27-62 (270)
457 3tif_A Uncharacterized ABC tra 85.3 0.53 1.8E-05 34.3 2.7 34 31-66 31-64 (235)
458 3i4f_A 3-oxoacyl-[acyl-carrier 85.3 0.6 2E-05 34.1 3.1 36 30-71 6-41 (264)
459 3u5t_A 3-oxoacyl-[acyl-carrier 85.3 0.54 1.8E-05 34.8 2.8 35 30-70 26-60 (267)
460 1f2t_A RAD50 ABC-ATPase; DNA d 85.2 0.83 2.8E-05 30.7 3.5 25 34-58 25-49 (149)
461 1hdc_A 3-alpha, 20 beta-hydrox 85.2 0.69 2.3E-05 33.8 3.4 35 31-71 5-39 (254)
462 4b4t_H 26S protease regulatory 85.2 0.61 2.1E-05 37.8 3.3 35 31-70 243-277 (467)
463 3awd_A GOX2181, putative polyo 85.2 0.71 2.4E-05 33.5 3.4 35 31-71 13-47 (260)
464 3pvs_A Replication-associated 85.2 0.49 1.7E-05 38.0 2.7 24 32-56 51-74 (447)
465 2q2v_A Beta-D-hydroxybutyrate 85.2 0.66 2.2E-05 33.8 3.2 36 31-72 4-39 (255)
466 1uay_A Type II 3-hydroxyacyl-C 85.1 0.57 2E-05 33.5 2.9 36 31-72 2-37 (242)
467 3tsc_A Putative oxidoreductase 85.1 0.61 2.1E-05 34.5 3.0 35 31-71 11-45 (277)
468 3con_A GTPase NRAS; structural 85.1 0.72 2.5E-05 31.6 3.3 21 33-54 23-43 (190)
469 3b6e_A Interferon-induced heli 85.1 0.46 1.6E-05 33.3 2.3 33 35-67 51-88 (216)
470 1geg_A Acetoin reductase; SDR 85.1 0.69 2.4E-05 33.7 3.3 35 31-71 2-36 (256)
471 3r1i_A Short-chain type dehydr 85.0 0.7 2.4E-05 34.3 3.4 36 30-71 31-66 (276)
472 1x1t_A D(-)-3-hydroxybutyrate 85.0 0.58 2E-05 34.2 2.9 35 31-71 4-38 (260)
473 3ai3_A NADPH-sorbose reductase 85.0 0.73 2.5E-05 33.7 3.4 35 31-71 7-41 (263)
474 1u0j_A DNA replication protein 85.0 1 3.5E-05 33.7 4.2 22 33-55 106-127 (267)
475 2z1n_A Dehydrogenase; reductas 85.0 0.73 2.5E-05 33.7 3.4 35 31-71 7-41 (260)
476 2rhc_B Actinorhodin polyketide 85.0 0.73 2.5E-05 34.1 3.5 35 31-71 22-56 (277)
477 1a5t_A Delta prime, HOLB; zinc 85.0 0.68 2.3E-05 35.4 3.3 27 31-58 24-50 (334)
478 3s55_A Putative short-chain de 85.0 0.72 2.5E-05 34.1 3.4 35 31-71 10-44 (281)
479 1ae1_A Tropinone reductase-I; 85.0 0.73 2.5E-05 34.0 3.4 35 31-71 21-55 (273)
480 1svm_A Large T antigen; AAA+ f 84.9 0.67 2.3E-05 36.4 3.3 33 31-68 169-201 (377)
481 2zat_A Dehydrogenase/reductase 84.9 0.65 2.2E-05 33.9 3.1 35 31-71 14-48 (260)
482 2wji_A Ferrous iron transport 84.8 0.91 3.1E-05 30.5 3.6 19 34-53 6-24 (165)
483 1xg5_A ARPG836; short chain de 84.8 0.75 2.6E-05 33.9 3.4 35 31-71 32-66 (279)
484 1qsg_A Enoyl-[acyl-carrier-pro 84.7 0.97 3.3E-05 33.1 4.0 35 31-71 9-45 (265)
485 1nff_A Putative oxidoreductase 84.7 0.77 2.6E-05 33.7 3.4 35 31-71 7-41 (260)
486 2d2e_A SUFC protein; ABC-ATPas 84.7 0.63 2.2E-05 34.2 3.0 24 31-55 29-52 (250)
487 1zcb_A G alpha I/13; GTP-bindi 84.7 0.65 2.2E-05 36.3 3.1 23 31-54 33-55 (362)
488 3tjr_A Short chain dehydrogena 84.7 0.75 2.6E-05 34.6 3.4 35 31-71 31-65 (301)
489 1h5q_A NADP-dependent mannitol 84.7 0.81 2.8E-05 33.2 3.5 35 31-71 14-48 (265)
490 3qks_A DNA double-strand break 84.6 0.85 2.9E-05 32.3 3.5 25 34-58 25-49 (203)
491 3osu_A 3-oxoacyl-[acyl-carrier 84.6 0.68 2.3E-05 33.6 3.1 35 31-71 4-38 (246)
492 1yxm_A Pecra, peroxisomal tran 84.6 0.77 2.6E-05 34.3 3.4 35 31-71 18-52 (303)
493 3grp_A 3-oxoacyl-(acyl carrier 84.6 0.69 2.4E-05 34.2 3.1 36 30-71 26-61 (266)
494 3rd5_A Mypaa.01249.C; ssgcid, 84.5 0.81 2.8E-05 34.1 3.6 36 30-71 15-50 (291)
495 3lf2_A Short chain oxidoreduct 84.5 0.76 2.6E-05 33.8 3.3 36 30-71 7-42 (265)
496 2jah_A Clavulanic acid dehydro 84.5 0.77 2.6E-05 33.3 3.3 35 31-71 7-41 (247)
497 3t4x_A Oxidoreductase, short c 84.4 0.64 2.2E-05 34.2 2.9 35 31-71 10-44 (267)
498 1g8p_A Magnesium-chelatase 38 84.4 0.37 1.3E-05 36.7 1.6 23 35-57 48-70 (350)
499 3ctm_A Carbonyl reductase; alc 84.4 0.75 2.6E-05 33.9 3.3 37 30-72 33-69 (279)
500 4dmm_A 3-oxoacyl-[acyl-carrier 84.4 0.59 2E-05 34.6 2.7 35 30-70 27-61 (269)
No 1
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.95 E-value=5.9e-29 Score=191.41 Aligned_cols=139 Identities=15% Similarity=0.219 Sum_probs=114.6
Q ss_pred ceeeeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973 4 SFRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID 83 (168)
Q Consensus 4 ~~~~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~ 83 (168)
..++.|.+|.+|+++.+...+ +..++|+|+|+|||+||||+|+|||..+|+ .|+|||+||+|++.++++.+|+..
T Consensus 69 ~~~~~Ea~r~lrt~l~~~~~~----~~~kvI~vts~kgG~GKTtva~nLA~~lA~-~G~rVLLID~D~~~~~l~~~~~~~ 143 (286)
T 3la6_A 69 TDLAIEAIRSLRTSLHFAMMQ----AQNNVLMMTGVSPSIGMTFVCANLAAVISQ-TNKRVLLIDCDMRKGYTHELLGTN 143 (286)
T ss_dssp TCHHHHHHHHHHHHHHHHSTT----TTCCEEEEEESSSSSSHHHHHHHHHHHHHT-TTCCEEEEECCTTTCCHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhhhccC----CCCeEEEEECCCCCCcHHHHHHHHHHHHHh-CCCCEEEEeccCCCCCHHHHhCCC
Confidence 345679999999999997743 448999999999999999999999999999 999999999999999999999998
Q ss_pred CCCCccc--------cCceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCH
Q 030973 84 QKPEVTK--------DMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGD 153 (168)
Q Consensus 84 ~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~ 153 (168)
...++.+ .+.+.+....++++++.+..++.+.. ......+.++++.++ ++||+|||||||.+..
T Consensus 144 ~~~gl~~~l~~~~~~~~~i~~~~~~~l~vl~~g~~~~~~~e-----ll~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~ 215 (286)
T 3la6_A 144 NVNGLSEILIGQGDITTAAKPTSIAKFDLIPRGQVPPNPSE-----LLMSERFAELVNWAS-KNYDLVLIDTPPILAV 215 (286)
T ss_dssp CTTCHHHHHHTSSCTTTTCEECSSTTEEEECCCSCCSCHHH-----HHTSHHHHHHHHHHH-HHCSEEEEECCCTTTC
T ss_pred CCCCHHHHccCCCCHHHheeccCCCCEEEEeCCCCCCCHHH-----HhchHHHHHHHHHHH-hCCCEEEEcCCCCcch
Confidence 8877654 23345555678999998865443322 234578899999998 8999999999998643
No 2
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.95 E-value=1.7e-28 Score=187.51 Aligned_cols=138 Identities=24% Similarity=0.351 Sum_probs=111.6
Q ss_pred ceeeeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973 4 SFRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID 83 (168)
Q Consensus 4 ~~~~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~ 83 (168)
..++.|.+|.+|+++.+...+ +.+++|+|+|.|||+||||+|+|||..+|+ .|+|||+||+|+++|+++..|+..
T Consensus 59 ~~~~~Ea~r~lrt~l~~~~~~----~~~kvI~vts~kgG~GKTt~a~nLA~~lA~-~G~rVLLID~D~~~~~l~~~~~~~ 133 (271)
T 3bfv_A 59 KSPISEKFRGIRSNIMFANPD----SAVQSIVITSEAPGAGKSTIAANLAVAYAQ-AGYKTLIVDGDMRKPTQHYIFNLP 133 (271)
T ss_dssp TSHHHHHHHHHHHHHHHSSTT----CCCCEEEEECSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCSSSCCHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHhhccC----CCCeEEEEECCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCCCccHHHHcCCC
Confidence 345679999999999998743 448999999999999999999999999999 999999999999999999999988
Q ss_pred CCCCcccc--------CceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973 84 QKPEVTKD--------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG 152 (168)
Q Consensus 84 ~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~ 152 (168)
...++.+. +.+.+....+++++|.+..++.+.. ......+.++++.++ ++||+|||||||.+.
T Consensus 134 ~~~gl~~~L~~~~~l~~~i~~~~~~~l~vl~~g~~~~~~~e-----ll~~~~l~~ll~~l~-~~yD~VIIDtpp~~~ 204 (271)
T 3bfv_A 134 NNEGLSSLLLNWSTYQDSIISTEIEDLDVLTSGPIPPNPSE-----LITSRAFANLYDTLL-MNYNFVIIDTPPVNT 204 (271)
T ss_dssp CSSSHHHHHTTSSCHHHHEEECSSTTEEEECCCSCCSCHHH-----HHTSHHHHHHHHHHH-HHCSEEEEECCCTTT
T ss_pred CCCCHHHHhCCCCCHHHcEEeCCCCCEEEEECCCCCCCHHH-----HhChHHHHHHHHHHH-hCCCEEEEeCCCCch
Confidence 77666541 2233444578999998755433221 223467888999988 899999999999763
No 3
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.94 E-value=8.5e-28 Score=186.01 Aligned_cols=137 Identities=15% Similarity=0.269 Sum_probs=110.8
Q ss_pred eeeeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC
Q 030973 5 FRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (168)
Q Consensus 5 ~~~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~ 84 (168)
.++.|.+|.+|+++.+... ++.+++|+|+|.|||+||||+|+|||..||+ .|+|||+||+|+++++++..|+...
T Consensus 82 ~~~~Ea~r~lrt~l~~~~~----~~~~kvI~vts~kgG~GKTtva~nLA~~lA~-~G~rVLLID~D~r~~~l~~~~~~~~ 156 (299)
T 3cio_A 82 DSAVEAVRALRTSLHFAMM----ETENNILMITGATPDSGKTFVSSTLAAVIAQ-SDQKVLFIDADLRRGYSHNLFTVSN 156 (299)
T ss_dssp CHHHHHHHHHHHHHHHHTS----SCSCCEEEEEESSSSSCHHHHHHHHHHHHHH-TTCCEEEEECCTTTCCHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHhcc----CCCCeEEEEECCCCCCChHHHHHHHHHHHHh-CCCcEEEEECCCCCccHHHHcCCCC
Confidence 4556999999999998763 3347999999999999999999999999999 9999999999999999999999888
Q ss_pred CCCcccc--------CceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973 85 KPEVTKD--------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG 152 (168)
Q Consensus 85 ~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~ 152 (168)
..++.+. +.+.+....+++++|.+..++.+.. ......+.++++.++ ++||+|||||||.+.
T Consensus 157 ~~gl~~~L~~~~~l~~~i~~~~~~~l~vl~~g~~~~~~~e-----ll~~~~l~~ll~~l~-~~yD~VIIDtpp~~~ 226 (299)
T 3cio_A 157 EHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSE-----LLMRDRMRQLLEWAN-DHYDLVIVDTPPMLA 226 (299)
T ss_dssp SSSHHHHHTTSSCHHHHCEEETTTTEEEECCCSCCSCHHH-----HHTSHHHHHHHHHHH-HHCSEEEEECCCTTT
T ss_pred CCCHHHHCcCCCCHHHhhhccCCCCEEEEECCCCCCCHHH-----HhCHHHHHHHHHHHH-hCCCEEEEcCCCCch
Confidence 7766542 2234444578999998755433221 233467888999888 899999999999864
No 4
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.93 E-value=6.2e-26 Score=172.25 Aligned_cols=133 Identities=47% Similarity=0.843 Sum_probs=99.0
Q ss_pred cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeec--ccCCeee
Q 030973 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPI--ENYGVKC 104 (168)
Q Consensus 27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 104 (168)
+.+.+++|+|+|+|||+||||+|+|||..|++ .|+||++||+|+++++++..|+......+.....+.+. ...++++
T Consensus 14 l~~~~~vI~v~s~kGGvGKTT~a~nLA~~la~-~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~v 92 (262)
T 2ph1_A 14 LGKIKSRIAVMSGKGGVGKSTVTALLAVHYAR-QGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIKV 92 (262)
T ss_dssp HTTCSCEEEEECSSSCTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEECTTTCCEE
T ss_pred hccCCeEEEEEcCCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccccCCCCeEE
Confidence 45568999999999999999999999999999 99999999999999899999988755422222222222 3467889
Q ss_pred eecCccCCCCCC-cccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973 105 MSMGFLVPSSSP-VVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ 160 (168)
Q Consensus 105 l~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~ 160 (168)
+|.+........ ..+........+.++++.++++.||||||||||++++..+....
T Consensus 93 lp~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~~ 149 (262)
T 2ph1_A 93 MSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVMQ 149 (262)
T ss_dssp ECGGGGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHHH
T ss_pred EeccccCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHHh
Confidence 988755433222 12233445677888888775468999999999999876554433
No 5
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.91 E-value=1.5e-24 Score=162.32 Aligned_cols=125 Identities=16% Similarity=0.147 Sum_probs=94.0
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCCCCCccccc-ccCCCCCcccc------------Cce
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGPSVPMMM-KIDQKPEVTKD------------MKM 94 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~~~~l~~~~-~~~~~~~~~~~------------~~~ 94 (168)
+++++|+|+|+|||+||||+|+|||..||+ . |+||++||+|++.++++..| +..+..++.+. ..+
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~-~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 80 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQ-EPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTM 80 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTT-STTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHH
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHh-CcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHH
Confidence 348999999999999999999999999999 8 99999999999988999998 45555554431 112
Q ss_pred eecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973 95 VPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT 161 (168)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~ 161 (168)
......+++++|.+..... ........+.++++.++ +.||||||||||+++.....++..
T Consensus 81 ~~~~~~~l~~l~~~~~~~~------~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~l~~ 140 (245)
T 3ea0_A 81 VQHISPSLDLIPSPATFEK------IVNIEPERVSDLIHIAA-SFYDYIIVDFGASIDHVGVWVLEH 140 (245)
T ss_dssp SEEEETTEEEECCCSSHHH------HHHCCHHHHHHHHHHHH-HHCSEEEEEEESSCCTTHHHHGGG
T ss_pred hEecCCCeEEEcCCCChHh------hhcCCHHHHHHHHHHHH-hhCCEEEEeCCCCCchHHHHHHHH
Confidence 2334578888876522110 00123467888888888 899999999999998776665543
No 6
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.90 E-value=1.8e-24 Score=171.29 Aligned_cols=129 Identities=19% Similarity=0.225 Sum_probs=89.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC-------------------CCcccc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-------------------PEVTKD 91 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~-------------------~~~~~~ 91 (168)
||+|+|+|+|||+||||+|+|||+.||+ .|+|||+||+|++++....+++.... .++.+.
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~-~G~rVLlID~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~ 79 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFAL-QGKRVLYVDCDPQCNATQLMLTEEQTESIYLDGLNDEVAERNSLAKTVYAI 79 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHH-TTCCEEEEECCTTCTTHHHHSCHHHHHHHCCC----CGGGGGHHHHSGGGG
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHh-CCCcEEEEEcCCCCChhhhhcCchhhhhhhcccccccccccccccCCHHHH
Confidence 6899999999999999999999999999 99999999999998777666543210 122221
Q ss_pred --------------CceeecccCCeeeeecCccCCCCCCcccC-----------chhHHHHHHHHHHhhcCC--CCcEEE
Q 030973 92 --------------MKMVPIENYGVKCMSMGFLVPSSSPVVWR-----------GPMVMSALRKMSREVDWG--NLDILV 144 (168)
Q Consensus 92 --------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~l~~l~~~l~~~--~yD~Ii 144 (168)
..+......+++++|.+............ .......+.++++.++ + .|||||
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~~L~llp~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~l~-~~~~yD~VI 158 (361)
T 3pg5_A 80 FVPLREGESQIAAEITPMRSERFGVDVLPGHPALSQIEDLMSDSWQSALGRQTGPFRRIHWAGQLAHAME-RDDRYDVIF 158 (361)
T ss_dssp GHHHHTTCSSCCCCCCCBCCTTTTSEEECCCGGGGTHHHHHHHHHHHHHTTCHHHHTTTTHHHHHHHHHH-HTTCCSEEE
T ss_pred HHHHhcCCCChhhcceeeccCCCCEEEEeCCchHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHh-hccCCCEEE
Confidence 12333344588888876433221110000 0000134788888887 5 999999
Q ss_pred EeCCCCCCHHHHHHHhh
Q 030973 145 IDMPPGTGDAQLTTTQT 161 (168)
Q Consensus 145 iD~p~~~~~~~~~~~~~ 161 (168)
|||||+++.....++..
T Consensus 159 ID~pP~l~~~~~~aL~~ 175 (361)
T 3pg5_A 159 FDVGPSLGPFNRTVLLG 175 (361)
T ss_dssp EECCSCCSHHHHHHHTT
T ss_pred EECCCCcCHHHHHHHHH
Confidence 99999998877766543
No 7
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.90 E-value=3.4e-23 Score=156.17 Aligned_cols=121 Identities=19% Similarity=0.325 Sum_probs=93.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC--Ccccc--------Cceee-ccc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTKD--------MKMVP-IEN 99 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~--~~~~~--------~~~~~-~~~ 99 (168)
+++|+|+|+|||+||||+|+|||..|++ .|+||++||+|+++++++.+|+..... ++.+. ..+.. ...
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 80 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQ-KGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSS
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHh-CCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCC
Confidence 6899999999999999999999999999 999999999999888999999876542 22220 11122 234
Q ss_pred CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCC-CCcEEEEeCCCCCCHHHHHHHh
Q 030973 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWG-NLDILVIDMPPGTGDAQLTTTQ 160 (168)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~yD~IiiD~p~~~~~~~~~~~~ 160 (168)
.+++++|.+.... ........+.++++.++ + .||||||||||+++.....++.
T Consensus 81 ~~l~~lp~~~~~~-------~~~~~~~~~~~~l~~l~-~~~yD~viiD~p~~~~~~~~~~l~ 134 (260)
T 3q9l_A 81 ENLYILPASQTRD-------KDALTREGVAKVLDDLK-AMDFEFIVCDSPAGIETGALMALY 134 (260)
T ss_dssp TTEEEECCCSCCC-------TTSSCHHHHHHHHHHHH-HTTCSEEEEECCSSSSHHHHHHHH
T ss_pred CCEEEecCCCccc-------hhhCCHHHHHHHHHHHh-ccCCCEEEEcCCCCCCHHHHHHHH
Confidence 6889998764321 11234567888888888 7 9999999999999887666655
No 8
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.89 E-value=6.8e-23 Score=152.70 Aligned_cols=121 Identities=21% Similarity=0.301 Sum_probs=90.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC-CCcccc--------CceeecccCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-PEVTKD--------MKMVPIENYG 101 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~-~~~~~~--------~~~~~~~~~~ 101 (168)
+++|+|+|.|||+||||+|+|||..|++ .|+||++||+|+++++++.+|+.... .++.+. ..+.+....+
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 80 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGD-RGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDN 80 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTT
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHh-cCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCC
Confidence 6899999999999999999999999999 99999999999998999999998776 444331 1122222367
Q ss_pred eeeeecCccCCCCCCcccCchhH-HHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973 102 VKCMSMGFLVPSSSPVVWRGPMV-MSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ 160 (168)
Q Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~ 160 (168)
++++|... ... .. ... ...+.++++.++ +.||||||||||+++.....++.
T Consensus 81 l~~lp~~~----~~~--~~-~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~~~ 132 (237)
T 1g3q_A 81 VYVLPGAV----DWE--HV-LKADPRKLPEVIKSLK-DKFDFILIDCPAGLQLDAMSAML 132 (237)
T ss_dssp EEEECCCC----SHH--HH-HHCCGGGHHHHHHTTG-GGCSEEEEECCSSSSHHHHHHHT
T ss_pred EEEEeCCC----ccc--hh-hhcCHHHHHHHHHHHH-hcCCEEEEECCCCcCHHHHHHHH
Confidence 77777221 000 00 111 356788888888 89999999999999877666554
No 9
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.89 E-value=1.2e-22 Score=153.70 Aligned_cols=121 Identities=27% Similarity=0.363 Sum_probs=91.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC-CCcccc-------CceeecccCCe
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-PEVTKD-------MKMVPIENYGV 102 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~-~~~~~~-------~~~~~~~~~~~ 102 (168)
+++|+|+|+|||+||||+|+|||..|++ .|+||++||+|++.++++.+|+.... .++.+. .........++
T Consensus 2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~~~~l 80 (263)
T 1hyq_A 2 VRTITVASGKGGTGKTTITANLGVALAQ-LGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGV 80 (263)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHHH-TTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGGC
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHh-CCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeCCCCe
Confidence 6899999999999999999999999999 99999999999988899999998776 444331 11111223678
Q ss_pred eeeecCccCCCCCCcccCchhH-HHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973 103 KCMSMGFLVPSSSPVVWRGPMV-MSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ 160 (168)
Q Consensus 103 ~~l~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~ 160 (168)
+++|... .. .. .... ...+.++++.++ +.||||||||||+++.....++.
T Consensus 81 ~~lp~~~----~~--~~-~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~~~ 131 (263)
T 1hyq_A 81 KVVPAGV----SL--EG-LRKANPEKLEDVLTQIM-ESTDILLLDAPAGLERSAVIAIA 131 (263)
T ss_dssp EEEECCS----CH--HH-HHHHCHHHHHHHHHHHH-HTCSEEEEECCSSSSHHHHHHHH
T ss_pred EEEcCCC----Cc--Ch-hhccChHHHHHHHHHHH-hhCCEEEEeCCCCCChHHHHHHH
Confidence 8887321 10 00 1122 567888888888 89999999999999877665554
No 10
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.88 E-value=4.6e-23 Score=156.53 Aligned_cols=129 Identities=22% Similarity=0.148 Sum_probs=89.2
Q ss_pred CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC-------CCCccc-------cCc
Q 030973 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ-------KPEVTK-------DMK 93 (168)
Q Consensus 28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~-------~~~~~~-------~~~ 93 (168)
.+++++|+|+|+|||+||||+|+|||..|+ .|+||++||+|++++....++.... ..++.+ ...
T Consensus 24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la--~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 101 (267)
T 3k9g_A 24 NKKPKIITIASIKGGVGKSTSAIILATLLS--KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDS 101 (267)
T ss_dssp --CCEEEEECCSSSSSCHHHHHHHHHHHHT--TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGG
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHHHH--CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHHH
Confidence 345899999999999999999999999999 5999999999998855444432211 122211 111
Q ss_pred eeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973 94 MVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT 161 (168)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~ 161 (168)
.......+++++|.+........... ......+.++++.++ +.||||||||||+++.....++..
T Consensus 102 ~i~~~~~~l~~lp~~~~~~~~~~~~~--~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~~~~~~~l~~ 166 (267)
T 3k9g_A 102 TIINVDNNLDLIPSYLTLHNFSEDKI--EHKDFLLKTSLGTLY-YKYDYIVIDTNPSLDVTLKNALLC 166 (267)
T ss_dssp GCEEEETTEEEECCCGGGGGTTTCCC--TTGGGHHHHHHHTTC-TTCSEEEEEECSSCSHHHHHHHTT
T ss_pred hhccCCCCEEEEeCChHHHHHHHhhh--hhHHHHHHHHHHHhh-cCCCEEEEECcCCccHHHHHHHHH
Confidence 22223378999988754332222111 113467888899988 899999999999998877766543
No 11
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.88 E-value=8.1e-23 Score=153.02 Aligned_cols=120 Identities=23% Similarity=0.208 Sum_probs=82.4
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCC--------cccc-------------
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPE--------VTKD------------- 91 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~--------~~~~------------- 91 (168)
.|+| |+|||+||||+|+|||..||+ .|+||++||+|++ ++++..|+...... +.+.
T Consensus 2 kI~v-s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (254)
T 3kjh_A 2 KLAV-AGKGGVGKTTVAAGLIKIMAS-DYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLIL 78 (254)
T ss_dssp EEEE-ECSSSHHHHHHHHHHHHHHTT-TCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCS
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCccccc
Confidence 3788 899999999999999999999 9999999999997 89999998765431 1110
Q ss_pred -------CceeecccCCeee-eecCccCCCCCCcccCchhHHHHHHHHHHhh-cCCCCcEEEEeCCCCCCHHHHHHH
Q 030973 92 -------MKMVPIENYGVKC-MSMGFLVPSSSPVVWRGPMVMSALRKMSREV-DWGNLDILVIDMPPGTGDAQLTTT 159 (168)
Q Consensus 92 -------~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l-~~~~yD~IiiD~p~~~~~~~~~~~ 159 (168)
.........++++ ++.+...+...... ......+.++++.+ + ++||||||||||+++.....++
T Consensus 79 ~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~l~~l~~-~~yD~viiD~pp~~~~~~~~~l 151 (254)
T 3kjh_A 79 NPKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCY---CRENSFLGSVVSALFL-DKKEAVVMDMGAGIEHLTRGTA 151 (254)
T ss_dssp SCCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCC---HHHHHHHHHHHHHHHH-TCCSEEEEEECTTCTTCCHHHH
T ss_pred CCchhccHHhcccccCCeEEEEEecccccCCCCCC---cchHHHHHHHHHHhcc-CCCCEEEEeCCCcccHHHHHHH
Confidence 0000111234455 55443322222211 11225688888888 7 8999999999999876555444
No 12
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.88 E-value=3.4e-22 Score=145.74 Aligned_cols=97 Identities=20% Similarity=0.209 Sum_probs=77.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (168)
|++|+|+|+|||+||||+|.|||..|++ .|+||++||+|++. ++...++... .++++++.+.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~-~g~~vlliD~D~~~-~~~~~~~~~~---------------~~~~~~~~~~- 62 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSR-SGYNIAVVDTDPQM-SLTNWSKAGK---------------AAFDVFTAAS- 62 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTTC-HHHHHHTTSC---------------CSSEEEECCS-
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHH-CCCeEEEEECCCCC-CHHHHHhcCC---------------CCCcEEecCc-
Confidence 6899999999999999999999999999 99999999999977 5555554221 2255565431
Q ss_pred CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT 161 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~ 161 (168)
..+.++++.++ ++||||||||||+++.....++..
T Consensus 63 ---------------~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~l~~ 97 (206)
T 4dzz_A 63 ---------------EKDVYGIRKDL-ADYDFAIVDGAGSLSVITSAAVMV 97 (206)
T ss_dssp ---------------HHHHHTHHHHT-TTSSEEEEECCSSSSHHHHHHHHH
T ss_pred ---------------HHHHHHHHHhc-CCCCEEEEECCCCCCHHHHHHHHH
Confidence 56778888888 889999999999998776666544
No 13
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.88 E-value=2.3e-22 Score=159.81 Aligned_cols=126 Identities=18% Similarity=0.227 Sum_probs=94.5
Q ss_pred CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcccc---------------C
Q 030973 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD---------------M 92 (168)
Q Consensus 28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~---------------~ 92 (168)
.+.+++|+|+|+|||+||||+|+|||..||+ .|+||++||+| ..++++.+|+..+..++.+. .
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~-~g~rVlliD~D-~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~ 217 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHAN-MGKKVFYLNIE-QCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLE 217 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHH-HTCCEEEEECC-TTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHH
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHh-CCCCEEEEECC-CCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHH
Confidence 4568999999999999999999999999999 99999999999 77799999999888766542 1
Q ss_pred ceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhc-CCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973 93 KMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVD-WGNLDILVIDMPPGTGDAQLTTTQT 161 (168)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-~~~yD~IiiD~p~~~~~~~~~~~~~ 161 (168)
........+++++|.+....... ......+.++++.++ +..||+|||||||+++...+.++..
T Consensus 218 ~~i~~~~~~l~~l~~~~~~~~~~------~~~~~~~~~ll~~l~~~~~yD~VIID~p~~~~~~~~~~l~~ 281 (373)
T 3fkq_A 218 SCIKQSQEGVSYFSSTKVALDIL------EISYADIDTLIGNIQGMDNYDEIIVDLPFSLEIEKLKLLSK 281 (373)
T ss_dssp HTCEECTTSCEECCCCSSGGGGG------GCCHHHHHHHHHHHHHTSCCSEEEEECCCCCCHHHHHHHTT
T ss_pred HHhhcCCCCEEEecCCCChHhHH------hCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCHHHHHHHHH
Confidence 11222236788887653221111 123455666666554 2589999999999999887777654
No 14
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.87 E-value=1.1e-22 Score=163.17 Aligned_cols=131 Identities=22% Similarity=0.191 Sum_probs=79.6
Q ss_pred cCCCCeEEEEecCCCCCChhhHHHHHHHHHH------HhCCCeEEEEeCCCCCCCcccccccCCCCCccc----------
Q 030973 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALA------SKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK---------- 90 (168)
Q Consensus 27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la------~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~---------- 90 (168)
..+.+++|+|+|+|||+||||+|+|||..|| + .|+|||+||+|+++ +++.+|+.....+...
T Consensus 107 ~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~-~g~rVlliD~D~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~ 184 (403)
T 3ez9_A 107 IHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLR-HDLRILVIDLDPQA-SSTMFLDHTHSIGSILETAAQAMLNN 184 (403)
T ss_dssp HSCSCEEEEECCC--------CHHHHHHHHHSCGGGGG-GCCCEEEEEESSSS-GGGSCC----------CCHHHHHHHT
T ss_pred CCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhc-CCCeEEEEeCCCCC-ChhhhhCCCcccCcccccHHHHHHhc
Confidence 3456999999999999999999999999999 6 79999999999976 8888898765322100
Q ss_pred -------cCceeecccCCeeeeecCccCCCCCCc-------cc-CchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHH
Q 030973 91 -------DMKMVPIENYGVKCMSMGFLVPSSSPV-------VW-RGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ 155 (168)
Q Consensus 91 -------~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~-~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~ 155 (168)
...+.+....+++++|.+......... .+ ........++++++.++ ++||||||||||+++..+
T Consensus 185 ~~~~~~~~~~i~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~yD~VIID~pP~~~~~~ 263 (403)
T 3ez9_A 185 LDAETLRKEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVA-DDYDFIFIDTGPHLDPFL 263 (403)
T ss_dssp CCHHHHHHTTSEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGSG-GGCSEEEEEECSSCSHHH
T ss_pred ccccccHHHHHhhcccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHh-hcCCEEEEECCCCccHHH
Confidence 123344455789999876431000000 00 00001123456777777 899999999999998777
Q ss_pred HHHHh
Q 030973 156 LTTTQ 160 (168)
Q Consensus 156 ~~~~~ 160 (168)
..++.
T Consensus 264 ~~al~ 268 (403)
T 3ez9_A 264 LNGLA 268 (403)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 15
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.87 E-value=1.3e-22 Score=162.37 Aligned_cols=132 Identities=18% Similarity=0.170 Sum_probs=90.9
Q ss_pred cCCCCeEEEEecCCCCCChhhHHHHHHHHHHH-----hCCCeEEEEeCCCCCCCcccccccCCCC-----Cccc------
Q 030973 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALAS-----KCQLKVGLLDADVYGPSVPMMMKIDQKP-----EVTK------ 90 (168)
Q Consensus 27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~-----~~g~rVlliD~D~~~~~l~~~~~~~~~~-----~~~~------ 90 (168)
....+++|+|+|+|||+||||+|+|||..||. ..|+|||+||+|+++ +++.+|+..... ++.+
T Consensus 104 ~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~-~l~~~l~~~~~~~~~~~~~~~~l~~~~ 182 (398)
T 3ez2_A 104 RYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS-SATMFLSHKHSIGIVNATSAQAMLQNV 182 (398)
T ss_dssp TCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC-HHHHHHSCHHHHSSCCSCHHHHHHHCC
T ss_pred CCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhHHhCCccccccccccHHHHHHhhc
Confidence 35568999999999999999999999999994 169999999999975 788888765421 1111
Q ss_pred ------cCceeecccCCeeeeecCccCCC---CCCc----c-cCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHH
Q 030973 91 ------DMKMVPIENYGVKCMSMGFLVPS---SSPV----V-WRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL 156 (168)
Q Consensus 91 ------~~~~~~~~~~~~~~l~~~~~~~~---~~~~----~-~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~ 156 (168)
...+.+....+++++|.+..... .... . .........+.++++.++ ++||||||||||+++....
T Consensus 183 ~~~~~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~-~~yD~ViiD~pp~~~~~~~ 261 (398)
T 3ez2_A 183 SREELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLK-SDYDFILVDSGPHLDAFLK 261 (398)
T ss_dssp CHHHHHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHT-TTCSEEEEEECSCCSHHHH
T ss_pred cccccHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhh-ccCCEEEEeCCCCccHHHH
Confidence 11234445578999987633100 0000 0 000011124467777888 8999999999999988877
Q ss_pred HHHh
Q 030973 157 TTTQ 160 (168)
Q Consensus 157 ~~~~ 160 (168)
+++.
T Consensus 262 ~~l~ 265 (398)
T 3ez2_A 262 NALA 265 (398)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 16
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.87 E-value=8.7e-22 Score=152.37 Aligned_cols=133 Identities=23% Similarity=0.213 Sum_probs=82.9
Q ss_pred eecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCc
Q 030973 9 TRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEV 88 (168)
Q Consensus 9 e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~ 88 (168)
+....++..+.... ..+.+++|+|+ +|||+||||+|+|||..||+ .|+||++||+|++. ++...++.....++
T Consensus 23 ~~~~~l~~~l~~~~----~~~~~~vI~v~-~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~~-~~~~~l~~~~~~~l 95 (307)
T 3end_A 23 DGEGSVQVHLDEAD----KITGAKVFAVY-GKGGIGKSTTSSNLSAAFSI-LGKRVLQIGCDPKH-DSTFTLTGSLVPTV 95 (307)
T ss_dssp ---------------------CCEEEEEE-CSTTSSHHHHHHHHHHHHHH-TTCCEEEEEESSSC-CTTHHHHTSCCCCH
T ss_pred cccchhhhhhcccc----ccCCceEEEEE-CCCCccHHHHHHHHHHHHHH-CCCeEEEEeCCCCC-CHHHHhCccCCCCH
Confidence 34444555444443 34458999999 89999999999999999999 99999999999986 55566665555544
Q ss_pred ccc-------------CceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHh--hcCCCCcEEEEeCCCCCCH
Q 030973 89 TKD-------------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSRE--VDWGNLDILVIDMPPGTGD 153 (168)
Q Consensus 89 ~~~-------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--l~~~~yD~IiiD~p~~~~~ 153 (168)
.+. .........+++++|.+....... .. ........++++. ++ +.||||||||||+++.
T Consensus 96 ~d~l~~~~~~~~~~~~~~~i~~~~~~l~vlp~~~~~~~~~---~~-~~~~~~~~~~l~~~~~~-~~yD~ViiD~p~~~~~ 170 (307)
T 3end_A 96 IDVLKDVDFHPEELRPEDFVFEGFNGVMCVEAGGPPAGTG---CG-GYVVGQTVKLLKQHHLL-DDTDVVIFDVLGDVVC 170 (307)
T ss_dssp HHHHHHTTSCGGGCCHHHHCEECGGGCEEEECCCCCSSSS---CT-THHHHHHHHHHHHTTTT-SSCSEEEEEECCSSCC
T ss_pred HHHHhhccccccCCCHHHhhccCCCCceEEECCCcccccc---cc-hhhhHHHHHHHHhhhcc-ccCCEEEEeCCCccch
Confidence 331 112223457899998874332221 11 1223344455555 55 7899999999998763
No 17
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.86 E-value=1.3e-22 Score=153.53 Aligned_cols=121 Identities=28% Similarity=0.321 Sum_probs=83.0
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcccc-------CceeecccCCe
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD-------MKMVPIENYGV 102 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 102 (168)
.+++|+|+|+|||+||||+|+|||..|++ .|+|||+||+|+++ ++...|+.....++.+. ..+.+ ..++
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~-~~~~~l~~~~~~~l~~~l~~~~~~~~i~~--~~~l 80 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLAR-LGKRVLLVDLDPQG-NATSGLGVRAERGVYHLLQGEPLEGLVHP--VDGF 80 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHH-TTCCEEEEECCTTC-HHHHHTTCCCSCCHHHHHTTCCGGGTCEE--ETTE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHH-CCCCEEEEECCCCc-CHHHHhCCCCCCCHHHHHcCCCHHHHccc--cCCE
Confidence 48999999999999999999999999999 99999999999975 67888887665444321 11111 4678
Q ss_pred eeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973 103 KCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ 160 (168)
Q Consensus 103 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~ 160 (168)
+++|.+............. ...+.++++. +.||||||||||+++.....++.
T Consensus 81 ~vlp~~~~~~~~~~~l~~~---~~~l~~~l~~---~~yD~iiiD~pp~~~~~~~~~l~ 132 (257)
T 1wcv_1 81 HLLPATPDLVGATVELAGA---PTALREALRD---EGYDLVLLDAPPSLSPLTLNALA 132 (257)
T ss_dssp EEECCCTTHHHHHHHHTTC---TTHHHHHCCC---TTCSEEEEECCSSCCHHHHHHHH
T ss_pred EEEeCChhHHHHHHHHhhH---HHHHHHHhcc---cCCCEEEEeCCCCCCHHHHHHHH
Confidence 8887652111000000000 0344454443 57999999999999877655543
No 18
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.86 E-value=9.9e-22 Score=152.84 Aligned_cols=121 Identities=22% Similarity=0.198 Sum_probs=82.1
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc------------cCceee
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK------------DMKMVP 96 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~------------~~~~~~ 96 (168)
...|+|+|+ +||||||||+|+|||.+||+ .|+||++||+|++.++...+++......... ......
T Consensus 46 ~~aKVIAIa-GKGGVGKTTtavNLA~aLA~-~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~ 123 (314)
T 3fwy_A 46 TGAKVFAVY-GKGGIGKSTTSSNLSAAFSI-LGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVF 123 (314)
T ss_dssp -CCEEEEEE-CSTTSSHHHHHHHHHHHHHH-TTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCE
T ss_pred CCceEEEEE-CCCccCHHHHHHHHHHHHHH-CCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHhee
Confidence 458999997 79999999999999999999 9999999999999877665544332221110 112233
Q ss_pred cccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHH
Q 030973 97 IENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA 154 (168)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~ 154 (168)
....++.+++.+.. .....+........+..+.+...++.||||++|||++....
T Consensus 124 ~~~~~i~~v~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~ 178 (314)
T 3fwy_A 124 EGFNGVMCVEAGGP---PAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCG 178 (314)
T ss_dssp ECGGGCEEEECCCC---CTTCSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCG
T ss_pred ecCCCeEEEeCCCC---cccchhhhccHHHHHHHHHhcchhhcCceEeeccCCcchhh
Confidence 44567888887632 23333333444455555554322378999999999986443
No 19
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.86 E-value=6.1e-23 Score=161.85 Aligned_cols=75 Identities=24% Similarity=0.244 Sum_probs=61.7
Q ss_pred eeeeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC
Q 030973 5 FRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (168)
Q Consensus 5 ~~~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~ 84 (168)
+++.|.+|.+|+++.+...+ +.+++|+|+|+|||+||||+|+|||..+|+ .|+|||+||+|+ +++++..|+...
T Consensus 3 s~~~E~~r~lrt~~~~~~~~----~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~-~G~rVLlvD~D~-~~~l~~~l~~~~ 76 (349)
T 3ug7_A 3 SKIKDSINSLRGITEKKLEK----KDGTKYIMFGGKGGVGKTTMSAATGVYLAE-KGLKVVIVSTDP-AHSLRDIFEQEF 76 (349)
T ss_dssp -------CTTHHHHHHHHHS----SCSCEEEEEECSSSTTHHHHHHHHHHHHHH-SSCCEEEEECCT-TCHHHHHHCSCC
T ss_pred HHHHHHHHHHhhhHHHhhcc----cCCCEEEEEeCCCCccHHHHHHHHHHHHHH-CCCeEEEEeCCC-CCCHHHHhCCCC
Confidence 46889999999999987743 448999999999999999999999999999 999999999999 569999999865
Q ss_pred C
Q 030973 85 K 85 (168)
Q Consensus 85 ~ 85 (168)
.
T Consensus 77 ~ 77 (349)
T 3ug7_A 77 G 77 (349)
T ss_dssp C
T ss_pred C
Confidence 4
No 20
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.86 E-value=5.7e-22 Score=150.43 Aligned_cols=118 Identities=21% Similarity=0.261 Sum_probs=79.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcccc----------CceeecccC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD----------MKMVPIENY 100 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~ 100 (168)
|++|+| ++|||+||||+|+|||..|++ .|+||++||+|++++.+..+++.....++.+. .........
T Consensus 1 M~vI~v-s~KGGvGKTT~a~nLA~~la~-~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~ 78 (269)
T 1cp2_A 1 MRQVAI-YGKGGIGKSTTTQNLTSGLHA-MGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYG 78 (269)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHT-TTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGG
T ss_pred CcEEEE-ecCCCCcHHHHHHHHHHHHHH-CCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCCC
Confidence 578999 689999999999999999999 99999999999999888887776655544331 111123356
Q ss_pred CeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973 101 GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG 152 (168)
Q Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~ 152 (168)
+++++|.+...... .....+......+.+.++.++ ++||||||||||.+.
T Consensus 79 ~l~vl~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~-~~yD~iiiD~~~~~~ 128 (269)
T 1cp2_A 79 GIRCVESGGPEPGV-GCAGRGIITSINMLEQLGAYT-DDLDYVFYDVLGDVV 128 (269)
T ss_dssp GCEEEECCCCCTTS-SCHHHHHHHHHHHHHHTTCCC-TTCSEEEEEEECSSC
T ss_pred CeeEEeCCCchhhc-cccCcchhhHHHHHHHHHhhc-cCCCEEEEeCCchhh
Confidence 88899876432211 100010011112223334445 789999999999764
No 21
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.86 E-value=7.6e-22 Score=151.52 Aligned_cols=118 Identities=25% Similarity=0.325 Sum_probs=78.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcccc------------Cceeecc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD------------MKMVPIE 98 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~------------~~~~~~~ 98 (168)
|++|+| ++|||+||||+|+|||..||+ .|+||++||+|++++.+..+++.....++.+. .......
T Consensus 2 MkvIav-s~KGGvGKTT~a~nLA~~La~-~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~ 79 (289)
T 2afh_E 2 MRQCAI-YGKGGIGKSTTTQNLVAALAE-MGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAG 79 (289)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHH-TTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEEC
T ss_pred ceEEEE-eCCCcCcHHHHHHHHHHHHHH-CCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccC
Confidence 789999 689999999999999999999 99999999999999888887766554443221 1111233
Q ss_pred cCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973 99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG 152 (168)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~ 152 (168)
..+++++|.+....... ....+......+.+.++.++ ++||||||||||.+.
T Consensus 80 ~~~l~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~l~-~~yD~ViID~~~~~~ 131 (289)
T 2afh_E 80 YGGVKCVESGGPEPGVG-CAGRGVITAINFLEEEGAYE-DDLDFVFYDVLGDVV 131 (289)
T ss_dssp GGGCEEEECCCCCTTTC-CHHHHHHHHHHHHHHTTCSS-TTCSEEEEEEECSSC
T ss_pred CCCeEEEeCCCcccccc-ccchhhhHHHHHHHHHHhhc-cCCCEEEEeCCCccc
Confidence 46888898764322111 00000000112222233344 789999999999753
No 22
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.86 E-value=8.2e-22 Score=151.35 Aligned_cols=121 Identities=21% Similarity=0.182 Sum_probs=85.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCe-eeeecCc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGV-KCMSMGF 109 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 109 (168)
+++|+|+|+|||+||||+|+|||..|++ .|+||++||+|+.++++...++.... +.+.. ......++ +++|.+.
T Consensus 4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~q~~l~~~l~~~~~--~~~~~--~~~~~~~l~~vl~~~~ 78 (286)
T 2xj4_A 4 TRVIVVGNEKGGAGKSTIAVHLVTALLY-GGAKVAVIDLDLRQRTSARFFENRRA--WLDNK--KIELPEPLALNLSDND 78 (286)
T ss_dssp CEEEEECCSSSCTTHHHHHHHHHHHHHH-TTCCEEEEECCTTTCHHHHHHHHHHH--HHHHH--TCCCCCCEEECSSSCH
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCCCCCCHHHHhCCChh--HhHhc--cccCCCchheEeeCCC
Confidence 6799999999999999999999999999 99999999999966788888875431 10000 00012345 5665421
Q ss_pred cCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT 161 (168)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~ 161 (168)
... ...........+.++++.++ +.||||||||||+++.....++..
T Consensus 79 ~~~----~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~l~~ 125 (286)
T 2xj4_A 79 VAL----AERPEEEQVAGFEAAFARAM-AECDFILIDTPGGDSAITRMAHGR 125 (286)
T ss_dssp HHH----TTSCHHHHHHHHHHHHHHHH-HHCSEEEEECCSSCCHHHHHHHHT
T ss_pred CCC----cChhhhhhHHHHHHHHHHHH-hcCCEEEEcCCCCccHHHHHHHHH
Confidence 000 00111234567888888888 899999999999998777666543
No 23
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.84 E-value=3e-21 Score=148.59 Aligned_cols=127 Identities=18% Similarity=0.244 Sum_probs=85.2
Q ss_pred CeEEEEec--CCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCc---ccccccCC-CCCccc-------cCceeec
Q 030973 31 KDVIAVAS--GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV---PMMMKIDQ-KPEVTK-------DMKMVPI 97 (168)
Q Consensus 31 ~~vI~v~s--~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l---~~~~~~~~-~~~~~~-------~~~~~~~ 97 (168)
.++|+|++ +|||+||||+|+|||..|++ .|+||++||+|++++.. ...++... ..++.+ ...+.+.
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~-~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 112 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDK-LNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVHL 112 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEES
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhccc
Confidence 67888888 89999999999999999999 99999999999997532 22234332 222221 1122222
Q ss_pred ccCCeeeeecCccCCCCCCcc--cCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973 98 ENYGVKCMSMGFLVPSSSPVV--WRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ 160 (168)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~ 160 (168)
..+++++|.+.......... +........+.++++.++ ++||||||||||+++.....++.
T Consensus 113 -~~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~~~l~ 175 (298)
T 2oze_A 113 -TDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSVYTNNAIV 175 (298)
T ss_dssp -SSSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSHHHHHHHH
T ss_pred -CCCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccHHHHHHHH
Confidence 46888888764322110000 000112346888999988 89999999999999887655544
No 24
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.83 E-value=1.1e-20 Score=147.88 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=55.5
Q ss_pred ecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973 10 RLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID 83 (168)
Q Consensus 10 ~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~ 83 (168)
+||.+|+++.+.. ++..++|+|+|+|||+||||+|+|||..+|+ .|+||++||+|++ ++++..|+..
T Consensus 2 ~~r~lr~~l~~~~-----~~~~~~i~v~sgkGGvGKTTva~~LA~~lA~-~G~rVllvD~D~~-~~l~~~l~~~ 68 (329)
T 2woo_A 2 SFDPLPGTLENLL-----EQTSLKWIFVGGKGGVGKTTTSCSLAIQMSK-VRSSVLLISTDPA-HNLSDAFGTK 68 (329)
T ss_dssp -----CCSTHHHH-----HCTTCCEEEEECSSSSSHHHHHHHHHHHHHT-SSSCEEEEECCTT-CHHHHHHSSC
T ss_pred CcchhhccHHHHh-----cCCCCEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCeEEEEECCCC-cCHHHHhCCc
Confidence 6889999988753 2336889999999999999999999999999 9999999999998 7999999875
No 25
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.82 E-value=6.2e-21 Score=150.64 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=50.4
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHH--HhCCCeEEEEeCCCCCCCcccccccCCC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALA--SKCQLKVGLLDADVYGPSVPMMMKIDQK 85 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la--~~~g~rVlliD~D~~~~~l~~~~~~~~~ 85 (168)
+..++|+|+|+|||+||||+|+|||..|| + .|+|||+||+|++ ++++.+|+.+..
T Consensus 15 ~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~-~G~rVLLvD~D~~-~~l~~~lg~~~~ 71 (354)
T 2woj_A 15 STTHKWIFVGGKGGVGKTTSSCSIAIQMALSQ-PNKQFLLISTDPA-HNLSDAFGEKFG 71 (354)
T ss_dssp CSSCCEEEEEESTTSSHHHHHHHHHHHHHHHC-TTSCEEEEECCSS-CCHHHHHTSCCC
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhc-CCCeEEEEECCCC-CCHHHHhCCCCC
Confidence 34689999999999999999999999999 8 9999999999995 899999998753
No 26
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.81 E-value=1.4e-19 Score=141.30 Aligned_cols=53 Identities=26% Similarity=0.340 Sum_probs=49.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK 85 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~ 85 (168)
+++|+|+|+|||+||||+|+|||..+|+ .|+|||+||+|+ +++++..|+....
T Consensus 13 m~~i~v~sgKGGvGKTTvA~~LA~~lA~-~G~rVLlvD~D~-~~~l~~~l~~~~~ 65 (324)
T 3zq6_A 13 KTTFVFIGGKGGVGKTTISAATALWMAR-SGKKTLVISTDP-AHSLSDSLEREIG 65 (324)
T ss_dssp BCEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEECCS-SCCHHHHHTSCCC
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHH-CCCcEEEEeCCC-CcCHHHHhCCcCC
Confidence 5899999999999999999999999999 999999999999 6799999998654
No 27
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.80 E-value=7.9e-20 Score=143.20 Aligned_cols=53 Identities=32% Similarity=0.344 Sum_probs=47.2
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~ 84 (168)
.+++|.|+|+|||+||||+|+|||..+|+ .|+||++||+|++. +++..|+...
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~-~g~~vllid~D~~~-~l~~~l~~~~ 66 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAK-VRRSVLLLSTDPAH-NLSDAFSQKF 66 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTT-SSSCEEEEECCSSC-HHHHHHTSCC
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHh-CCCcEEEEECCCCC-ChhHHhcccc
Confidence 35678899999999999999999999999 99999999999854 8888888653
No 28
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.79 E-value=1.6e-19 Score=132.81 Aligned_cols=88 Identities=31% Similarity=0.303 Sum_probs=66.7
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCccC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLV 111 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 111 (168)
++|+|+|+|||+||||+|.|||..|++ .| ||++||+|+++ ++...++. .+ .+ ..+++.
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~-~g-~VlliD~D~q~-~~~~~~~~-~~---------l~-----~~vi~~---- 58 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLAL-QG-ETLLIDGDPNR-SATGWGKR-GS---------LP-----FKVVDE---- 58 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHT-TS-CEEEEEECTTC-HHHHHHHH-SC---------CS-----SEEEEG----
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHh-cC-CEEEEECCCCC-CHHHHhcC-CC---------CC-----cceeCH----
Confidence 489999999999999999999999999 99 99999999986 55655654 11 00 023321
Q ss_pred CCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCC-CCHHHHHHHh
Q 030973 112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPG-TGDAQLTTTQ 160 (168)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~-~~~~~~~~~~ 160 (168)
. .++.++ +.||||||||||+ .+.....++.
T Consensus 59 --------------~----~l~~l~-~~yD~viiD~p~~~~~~~~~~~l~ 89 (209)
T 3cwq_A 59 --------------R----QAAKYA-PKYQNIVIDTQARPEDEDLEALAD 89 (209)
T ss_dssp --------------G----GHHHHG-GGCSEEEEEEECCCSSSHHHHHHH
T ss_pred --------------H----HHHHhh-hcCCEEEEeCCCCcCcHHHHHHHH
Confidence 0 344455 7899999999999 7776665554
No 29
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=99.73 E-value=2.4e-18 Score=135.44 Aligned_cols=53 Identities=28% Similarity=0.276 Sum_probs=46.8
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHH--HhCCCeEEEEeCCCCCCCcccccccCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALA--SKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la--~~~g~rVlliD~D~~~~~l~~~~~~~~ 84 (168)
..+.|+|+++|||+||||+|+|||..+| + .|+||++||+|+ +++++..|+...
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~-~g~~vllid~D~-~~~l~~~~~~~~ 70 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQ-PNEQFLLISTDP-AHNLSDAFCQKF 70 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHC-TTSCEEEEECCS-SCHHHHHHTSCC
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhc-CCCeEEEEECCC-CCChHHHhcccc
Confidence 3557788889999999999999999999 8 999999999997 568999998654
No 30
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=99.70 E-value=4.5e-17 Score=129.15 Aligned_cols=51 Identities=27% Similarity=0.366 Sum_probs=45.6
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK 85 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~ 85 (168)
..|.++++|||+||||+|+|||..+|+ .|+|||+||+ + +++++..|+....
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~-~g~~vllvd~-~-~~~l~~~~~~~~~ 52 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLAS-QGKRVLLAGL-A-EPVLPLLLEQTLT 52 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHH-TTCCEEEEEC-S-CSHHHHHHTSCCC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCeEEEeC-C-CCChHHhhCCCCC
Confidence 467888999999999999999999999 9999999999 5 5699999987643
No 31
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.68 E-value=3.9e-17 Score=136.53 Aligned_cols=54 Identities=26% Similarity=0.284 Sum_probs=48.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP 86 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~ 86 (168)
++.|.|+++|||+||||+|+|||..+|+ .|+|||+||+|++ ++++..|+.+...
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~-~G~rVLlvd~D~~-~~l~~~l~~~~~~ 60 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAE-QGKRVLLVSTDPA-SNVGQVFSQTIGN 60 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTT-CCHHHHTTSCCCS
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHH-CCCcEEEEECCCC-cCHHHHhCCcccC
Confidence 4456788999999999999999999999 9999999999995 8999999986543
No 32
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.65 E-value=7.9e-17 Score=118.84 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=35.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
.|+|+|+|.|||+||||+|+|||..|++ .|+||+++|
T Consensus 1 ~k~I~v~s~kgGvGKTt~a~nLa~~la~-~G~rVll~d 37 (224)
T 1byi_A 1 SKRYFVTGTDTEVGKTVASCALLQAAKA-AGYRTAGYK 37 (224)
T ss_dssp CEEEEEEESSTTSCHHHHHHHHHHHHHH-TTCCEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEc
Confidence 3789999999999999999999999999 999999976
No 33
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.61 E-value=1.2e-15 Score=123.29 Aligned_cols=98 Identities=23% Similarity=0.278 Sum_probs=69.4
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeec
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSM 107 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (168)
+.+++|+|+ ++||+||||++.+||.++++ . |+||++||+|++++.....+.. .....++++++.
T Consensus 98 ~~~~vI~iv-G~~GvGKTT~a~~LA~~l~~-~~G~kVllvd~D~~r~~a~~ql~~-------------~~~~~~l~v~~~ 162 (433)
T 2xxa_A 98 QPPAVVLMA-GLQGAGKTTSVGKLGKFLRE-KHKKKVLVVSADVYRPAAIKQLET-------------LAEQVGVDFFPS 162 (433)
T ss_dssp SSSEEEEEE-CSTTSSHHHHHHHHHHHHHH-TSCCCEEEEECCCSSTTHHHHHHH-------------HHHHHTCEECCC
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHH-hcCCeEEEEecCCCCccHHHHHHh-------------hcccCCeeEEeC
Confidence 347788887 68999999999999999999 8 9999999999998775543321 012245666654
Q ss_pred CccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973 108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG 152 (168)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~ 152 (168)
+.. . .....+.+.++.+++..||||||||||.+.
T Consensus 163 ~~~----~-------dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~ 196 (433)
T 2xxa_A 163 DVG----Q-------KPVDIVNAALKEAKLKFYDVLLVDTAGRLH 196 (433)
T ss_dssp CSS----S-------CHHHHHHHHHHHHHHTTCSEEEEECCCCCT
T ss_pred CCC----C-------CHHHHHHHHHHHHHhCCCCEEEEECCCccc
Confidence 420 0 112233556666553589999999998764
No 34
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.55 E-value=7.2e-15 Score=114.44 Aligned_cols=103 Identities=19% Similarity=0.233 Sum_probs=68.1
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG 108 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (168)
..+++|++++. +|+||||++.+||..++. .|++|+++|+|++++.....+..... .....++.++|.+
T Consensus 103 ~~~~vI~ivG~-~G~GKTT~~~~LA~~l~~-~g~kVllid~D~~r~~a~~ql~~~~~----------~~~~~~l~vip~~ 170 (320)
T 1zu4_A 103 NRLNIFMLVGV-NGTGKTTSLAKMANYYAE-LGYKVLIAAADTFRAGATQQLEEWIK----------TRLNNKVDLVKAN 170 (320)
T ss_dssp TSCEEEEEESS-TTSSHHHHHHHHHHHHHH-TTCCEEEEECCCSCHHHHHHHHHHHT----------TTSCTTEEEECCS
T ss_pred CCCeEEEEECC-CCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHHHHHh----------ccccCCceEEeCC
Confidence 34789999986 999999999999999999 99999999999987543221110000 0013567777543
Q ss_pred ccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCH
Q 030973 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGD 153 (168)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~ 153 (168)
.. ... + ....++.+...++ +.||+|||||||.+..
T Consensus 171 ~~---~~~-----p-~~~~~~~l~~~~~-~~yD~VIIDTpg~l~~ 205 (320)
T 1zu4_A 171 KL---NAD-----P-ASVVFDAIKKAKE-QNYDLLLIDTAGRLQN 205 (320)
T ss_dssp ST---TCC-----H-HHHHHHHHHHHHH-TTCSEEEEECCCCGGG
T ss_pred CC---CCC-----H-HHHHHHHHHHHHh-cCCCEEEEcCCCcccc
Confidence 21 010 1 1122344444445 7999999999998753
No 35
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.54 E-value=8.5e-16 Score=128.43 Aligned_cols=53 Identities=32% Similarity=0.413 Sum_probs=40.8
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID 83 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~ 83 (168)
...++|.|+++|||+||||+|+|||..+++ .|+||++||+|++ +++...|+..
T Consensus 324 ~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~-~g~~vllvD~Dp~-~~l~~~l~~~ 376 (589)
T 1ihu_A 324 RNEHGLIMLMGKGGVGKTTMAAAIAVRLAD-MGFDVHLTTSDPA-AHLSMTLNGS 376 (589)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESCCC-----------
T ss_pred ccCCeEEEEecCCCCChhhHHHHHHHHHHH-CCCcEEEEeCCCc-ccHhHHhccc
Confidence 446889999999999999999999999999 9999999999998 5788888763
No 36
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.48 E-value=6e-14 Score=108.18 Aligned_cols=96 Identities=27% Similarity=0.320 Sum_probs=67.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (168)
+++|+++ +++|+||||++.+||..++. .|+||+++|+|++++.....+... ....++.+++...
T Consensus 98 ~~vi~i~-G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D~~r~~a~~ql~~~-------------~~~~~v~v~~~~~- 161 (297)
T 1j8m_F 98 PYVIMLV-GVQGTGKTTTAGKLAYFYKK-KGFKVGLVGADVYRPAALEQLQQL-------------GQQIGVPVYGEPG- 161 (297)
T ss_dssp SEEEEEE-CSSCSSTTHHHHHHHHHHHH-TTCCEEEEECCCSSSHHHHHHHHH-------------HHHHTCCEECCTT-
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCCHHHHHHHHHH-------------hccCCeEEEecCC-
Confidence 6778776 68999999999999999999 999999999999987665443211 0113455554210
Q ss_pred CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG 152 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~ 152 (168)
.. .....+.+.++.++++.||+|||||||...
T Consensus 162 ---~~-------~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~ 193 (297)
T 1j8m_F 162 ---EK-------DVVGIAKRGVEKFLSEKMEIIIVDTAGRHG 193 (297)
T ss_dssp ---CC-------CHHHHHHHHHHHHHHTTCSEEEEECCCSCC
T ss_pred ---CC-------CHHHHHHHHHHHHHhCCCCEEEEeCCCCcc
Confidence 00 112233456666543689999999999876
No 37
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.43 E-value=1.5e-13 Score=105.95 Aligned_cols=97 Identities=22% Similarity=0.289 Sum_probs=66.5
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCc
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (168)
.+++|+++ +++|+||||++.+||..++. .|++|+++|+|++++.....+.. + ....++.+++.+.
T Consensus 97 ~~~~i~i~-g~~G~GKTT~~~~la~~~~~-~~~~v~l~~~d~~~~~~~~ql~~-----~--------~~~~~l~~~~~~~ 161 (295)
T 1ls1_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRL-----L--------GEKVGVPVLEVMD 161 (295)
T ss_dssp SSEEEEEE-CCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHHHHHHHHH-----H--------HHHHTCCEEECCT
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcccHhHHHHHHH-----h--------cccCCeEEEEcCC
Confidence 57899998 78999999999999999999 99999999999988655433321 0 1123566665432
Q ss_pred cCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG 152 (168)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~ 152 (168)
. .. + ....+..++.+...+||+|||||||..+
T Consensus 162 ---~-~~-----p--~~l~~~~l~~~~~~~~D~viiDtpp~~~ 193 (295)
T 1ls1_A 162 ---G-ES-----P--ESIRRRVEEKARLEARDLILVDTAGRLQ 193 (295)
T ss_dssp ---T-CC-----H--HHHHHHHHHHHHHHTCCEEEEECCCCSS
T ss_pred ---C-CC-----H--HHHHHHHHHHHHhCCCCEEEEeCCCCcc
Confidence 0 10 1 1122445555421689999999998753
No 38
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.42 E-value=4.4e-14 Score=106.29 Aligned_cols=45 Identities=24% Similarity=0.294 Sum_probs=40.7
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV 76 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l 76 (168)
....+.++++|||+||||++.+||..++ .|+||++||+|++...+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~--~g~~v~vvd~D~~~~~~ 56 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE--DNYKVAYVNLDTGVKEL 56 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT--TTSCEEEEECCSSCSCC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH--CCCeEEEEeCCCCcccc
Confidence 4678899999999999999999999998 69999999999988654
No 39
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.42 E-value=1.8e-13 Score=110.11 Aligned_cols=97 Identities=22% Similarity=0.269 Sum_probs=68.7
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCc
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (168)
.+++|+++ +++|+||||++.+||..++. .|++|+++|+|++++.....+... ....++.+++.+.
T Consensus 97 ~~~vi~i~-G~~GsGKTT~~~~LA~~l~~-~g~~Vllvd~D~~r~aa~~qL~~~-------------~~~~gv~v~~~~~ 161 (425)
T 2ffh_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRLL-------------GEKVGVPVLEVMD 161 (425)
T ss_dssp SSEEEEEE-CCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCSSCHHHHHHHHHH-------------HHHHTCCEEECCT
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCeEEEeeccccCchhHHHHHHh-------------cccCCccEEecCC
Confidence 47888887 67999999999999999999 899999999999987665444321 0123566666542
Q ss_pred cCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG 152 (168)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~ 152 (168)
. .. + ...+.+.++.++.+.||+|||||||.+.
T Consensus 162 ---~-~~-----p--~~i~~~~l~~~~~~~~DvVIIDTaG~l~ 193 (425)
T 2ffh_A 162 ---G-ES-----P--ESIRRRVEEKARLEARDLILVDTAGRLQ 193 (425)
T ss_dssp ---T-CC-----H--HHHHHHHHHHHHHTTCSEEEEECCCCSS
T ss_pred ---C-CC-----H--HHHHHHHHHHHHHCCCCEEEEcCCCccc
Confidence 1 10 1 1223456666532789999999999763
No 40
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.37 E-value=1.2e-12 Score=105.63 Aligned_cols=96 Identities=17% Similarity=0.230 Sum_probs=63.7
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCc
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (168)
.+++|++++. +|+||||++.+||.++++ .|+||++|++|++++.....+..... ..++.+....
T Consensus 99 ~p~vIlivG~-~G~GKTTt~~kLA~~l~~-~G~kVllv~~D~~R~aa~eqL~~~~~-------------~~gvpv~~~~- 162 (443)
T 3dm5_A 99 KPTILLMVGI-QGSGKTTTVAKLARYFQK-RGYKVGVVCSDTWRPGAYHQLRQLLD-------------RYHIEVFGNP- 162 (443)
T ss_dssp SSEEEEEECC-TTSSHHHHHHHHHHHHHT-TTCCEEEEECCCSSTHHHHHHHHHHG-------------GGTCEEECCT-
T ss_pred CCeEEEEECc-CCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHHHHHH-------------hcCCcEEecC-
Confidence 4677777665 999999999999999999 99999999999998765433332111 1223333211
Q ss_pred cCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT 151 (168)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~ 151 (168)
. . ......+.+.++.++.+.||+||||||+..
T Consensus 163 --~---~-----~dp~~i~~~al~~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 163 --Q---E-----KDAIKLAKEGVDYFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp --T---C-----CCHHHHHHHHHHHHHHTTCSEEEEECCCCS
T ss_pred --C---C-----CCHHHHHHHHHHHHHhCCCCEEEEECCCcc
Confidence 0 0 011233445555555357999999999864
No 41
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.35 E-value=2.2e-12 Score=104.09 Aligned_cols=95 Identities=26% Similarity=0.287 Sum_probs=63.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (168)
+++|++++ .+|+||||++.+||..+++ .|+||++||+|++++.....+... ....++.+.+.+..
T Consensus 99 ~~vI~ivG-~~GvGKTTla~~La~~l~~-~G~kVllv~~D~~r~~a~~qL~~~-------------~~~~gv~v~~~~~~ 163 (432)
T 2v3c_C 99 QNVILLVG-IQGSGKTTTAAKLARYIQK-RGLKPALIAADTYRPAAYEQLKQL-------------AEKIHVPIYGDETR 163 (432)
T ss_dssp CCCEEEEC-CSSSSTTHHHHHHHHHHHH-HHCCEEEECCSCCCTTGGGSSHHH-------------HHHSSCCEECCSSS
T ss_pred CeEEEEEC-CCCCCHHHHHHHHHHHHHH-cCCeEEEEeccccCchHHHHHHHh-------------hhccCcceEecCCC
Confidence 56888877 5999999999999999999 899999999999987764433210 01234445543210
Q ss_pred CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG 152 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~ 152 (168)
...+. ..+.+.++.+ ..||+||||||+...
T Consensus 164 -~~dp~---------~i~~~~l~~~--~~~D~vIIDT~G~~~ 193 (432)
T 2v3c_C 164 -TKSPV---------DIVKEGMEKF--KKADVLIIDTAGRHK 193 (432)
T ss_dssp -CCSSS---------TTHHHHHHTT--SSCSEEEEECCCSCS
T ss_pred -CCCHH---------HHHHHHHHHh--hCCCEEEEcCCCCcc
Confidence 00110 1123444444 589999999999764
No 42
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.30 E-value=2.7e-12 Score=105.30 Aligned_cols=98 Identities=18% Similarity=0.182 Sum_probs=63.3
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG 108 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (168)
...++|++++ .+|+||||++.+||.++++ .|+||++||+|++++.....+.... ...++.+++..
T Consensus 99 ~~~~vI~ivG-~~GvGKTTl~~kLA~~l~~-~G~kVllVd~D~~r~aa~~qL~~~~-------------~~~~i~v~~~~ 163 (504)
T 2j37_W 99 GKQNVIMFVG-LQGSGKTTTCSKLAYYYQR-KGWKTCLICADTFRAGAFDQLKQNA-------------TKARIPFYGSY 163 (504)
T ss_dssp S--EEEEEEC-STTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSSHHHHHHHHHH-------------HHHTCCEEECC
T ss_pred CCCeEEEEEC-CCCCCHHHHHHHHHHHHHh-CCCeEEEEeccccchhHHHHHHHHh-------------hccCceEEccC
Confidence 3467888875 5899999999999999999 9999999999999876544332211 11233333321
Q ss_pred ccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG 152 (168)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~ 152 (168)
. ... ....+.+.++.+++..||+||||||+...
T Consensus 164 ---~-~~d-------p~~i~~~al~~~~~~~~DvvIIDTpG~~~ 196 (504)
T 2j37_W 164 ---T-EMD-------PVIIASEGVEKFKNENFEIIIVDTSGRHK 196 (504)
T ss_dssp ---C-CSC-------HHHHHHHHHHHHHHTTCCEEEEEECCCCT
T ss_pred ---C-CCC-------HHHHHHHHHHHHHHCCCcEEEEeCCCCcc
Confidence 0 000 11222334444433689999999999763
No 43
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.20 E-value=4.3e-11 Score=96.47 Aligned_cols=97 Identities=27% Similarity=0.307 Sum_probs=61.8
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCc
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (168)
.+++|+++ +.+|+||||++.+||..++. .|++|+++|+|++++.....+..... ..++.+....
T Consensus 96 ~~~vI~lv-G~~GsGKTTt~~kLA~~l~~-~G~kVllv~~D~~r~~a~eqL~~~~~-------------~~gv~~~~~~- 159 (433)
T 3kl4_A 96 LPFIIMLV-GVQGSGKTTTAGKLAYFYKK-RGYKVGLVAADVYRPAAYDQLLQLGN-------------QIGVQVYGEP- 159 (433)
T ss_dssp SSEEEEEC-CCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCSCHHHHHHHHHHHH-------------TTTCCEECCT-
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCeEEEEecCccchhHHHHHHHHHH-------------hcCCceeecc-
Confidence 35666665 67899999999999999999 99999999999987543322221110 0122222111
Q ss_pred cCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG 152 (168)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~ 152 (168)
.. ........+.++.+.+..||+||||||+...
T Consensus 160 -----~~-----~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 160 -----NN-----QNPIEIAKKGVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp -----TC-----SCHHHHHHHHHHHTTTTTCSEEEEEECCCSS
T ss_pred -----cc-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCcc
Confidence 00 0112233455666554689999999998643
No 44
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.19 E-value=2.4e-11 Score=93.95 Aligned_cols=45 Identities=29% Similarity=0.266 Sum_probs=40.4
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~ 75 (168)
..+++|++++. +|+||||++.+||..++. .|++|+++|+|.+++.
T Consensus 102 ~~~~vi~ivG~-~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D~~r~~ 146 (306)
T 1vma_A 102 EPPFVIMVVGV-NGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRAA 146 (306)
T ss_dssp SSCEEEEEECC-TTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCHH
T ss_pred CCCeEEEEEcC-CCChHHHHHHHHHHHHHh-cCCEEEEEccccccHH
Confidence 34789999887 999999999999999999 8999999999997754
No 45
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.16 E-value=1.2e-10 Score=89.57 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=41.1
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCccc
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPM 78 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~ 78 (168)
..+++|++++. +|+||||++.+||..++...|++|+++|+|++++....
T Consensus 103 ~~g~vi~lvG~-~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~e 151 (296)
T 2px0_A 103 IHSKYIVLFGS-TGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVE 151 (296)
T ss_dssp CCSSEEEEEES-TTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHH
T ss_pred CCCcEEEEECC-CCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHH
Confidence 34778999876 89999999999999998437999999999998765543
No 46
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=99.07 E-value=9.1e-11 Score=94.52 Aligned_cols=75 Identities=24% Similarity=0.175 Sum_probs=64.0
Q ss_pred eeecCceeeccccCCccc-ccCCCCeEEEEecCCC---CCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973 8 FTRLGGVRYYAAFGSKDL-KIDGVKDVIAVASGKG---GVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID 83 (168)
Q Consensus 8 ~e~~~~~r~~~~~~~~~~-~~~~~~~vI~v~s~kg---G~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~ 83 (168)
.|.|+..|.++.+...+. +..+..|+|.|+|..+ |+||||++.|||..+++ .|+||+++ .+.|+++..||++
T Consensus 33 lE~YG~~kAKv~~~~l~~~~~~~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~-~GkkVLLi---LR~Psl~~~FGik 108 (557)
T 3pzx_A 33 VELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALAR-LGKRVMVC---LREPSLGPSFGIK 108 (557)
T ss_dssp EEEBSSSCEEECHHHHHHTTTSCCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHH-TTCCEEEE---ECCCCSHHHHHTC
T ss_pred HHHhhCeeEEecHHHhhhhhccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHH-cCCeEEEE---eCCCCccccCCCC
Confidence 478889998877754332 1234589999999999 99999999999999999 99999999 8999999999988
Q ss_pred CCC
Q 030973 84 QKP 86 (168)
Q Consensus 84 ~~~ 86 (168)
...
T Consensus 109 gga 111 (557)
T 3pzx_A 109 GGA 111 (557)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 47
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=99.02 E-value=4.9e-10 Score=82.77 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=41.1
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~ 75 (168)
.++...|+++|||+||||++.++|..+++ .|++|+++|+|+++..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~-~G~~V~v~d~D~q~~~ 48 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLR-QGVRVMAGVVETHGRA 48 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCTTCH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHH-CCCCEEEEEeCCCCCh
Confidence 46788899999999999999999999999 9999999999997643
No 48
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.93 E-value=3.5e-09 Score=83.35 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=35.0
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~ 74 (168)
...+|++ ++++|+||||++.+|+..++. .|+||+++|+|++.+
T Consensus 78 ~~~~I~i-~G~~G~GKSTl~~~L~~~l~~-~g~kV~vi~~Dp~~~ 120 (355)
T 3p32_A 78 NAHRVGI-TGVPGVGKSTAIEALGMHLIE-RGHRVAVLAVDPSST 120 (355)
T ss_dssp CSEEEEE-ECCTTSSHHHHHHHHHHHHHT-TTCCEEEEEEC----
T ss_pred CceEEEE-ECCCCCCHHHHHHHHHHHHHh-CCCceEEEecCCCCC
Confidence 4566766 567999999999999999999 999999999999775
No 49
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=98.80 E-value=3.1e-09 Score=78.84 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=35.6
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
+++.|.|++...|+|||+++++|+..|++ +|+||...-
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~-~G~~V~~~K 40 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEH-QNIKSLCLK 40 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHH-TTCCEEEEC
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHH-CCCeeEEec
Confidence 48999999999999999999999999999 999999853
No 50
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=98.71 E-value=1e-08 Score=76.74 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=37.0
Q ss_pred ccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 26 KIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 26 ~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
++.++++.|.|++...|+|||++++.|+..|++ +|+||..+-
T Consensus 16 ~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~-~G~~V~~fK 57 (242)
T 3qxc_A 16 NLYFQGHMLFISATNTNAGKTTCARLLAQYCNA-CGVKTILLK 57 (242)
T ss_dssp ---CCCEEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEC
T ss_pred HHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHh-CCCceEEEe
Confidence 456668999999999999999999999999999 999999984
No 51
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.71 E-value=1.3e-08 Score=79.63 Aligned_cols=44 Identities=27% Similarity=0.298 Sum_probs=37.5
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~ 75 (168)
...+|++++ ++|+||||+..+|+..+.. .|.+|.+++.|++.+.
T Consensus 55 ~~~~i~i~G-~~g~GKSTl~~~l~~~~~~-~~~~v~v~~~d~~~~~ 98 (341)
T 2p67_A 55 NTLRLGVTG-TPGAGKSTFLEAFGMLLIR-EGLKVAVIAVDPSSPV 98 (341)
T ss_dssp CSEEEEEEE-CTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCC---
T ss_pred CCEEEEEEc-CCCCCHHHHHHHHHHHHHh-cCCeEEEEeecCCcCC
Confidence 377888865 9999999999999999999 8999999999997754
No 52
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=98.70 E-value=2.6e-08 Score=74.89 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=36.2
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
++++.|.|++...|+|||++++.|+..|++ +|+||..+-
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~-~G~~V~~fK 62 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQ-AGIDVAVCK 62 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCeEEEEe
Confidence 348999999999999999999999999999 999999864
No 53
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.37 E-value=1.1e-06 Score=68.36 Aligned_cols=45 Identities=27% Similarity=0.265 Sum_probs=38.8
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~ 75 (168)
..+.+|++++. .|+||||++..||..+.. .+.+|++++.|..+.+
T Consensus 127 ~~g~vi~lvG~-nGaGKTTll~~Lag~l~~-~~g~V~l~g~D~~r~~ 171 (328)
T 3e70_C 127 EKPYVIMFVGF-NGSGKTTTIAKLANWLKN-HGFSVVIAASDTFRAG 171 (328)
T ss_dssp CSSEEEEEECC-TTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSTT
T ss_pred CCCeEEEEECC-CCCCHHHHHHHHHHHHHh-cCCEEEEEeecccccc
Confidence 34778888665 899999999999999998 8999999999987654
No 54
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=98.23 E-value=3.8e-06 Score=60.64 Aligned_cols=38 Identities=29% Similarity=0.366 Sum_probs=33.2
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|.++.++| .||||.|..+|..++. .|+||+++=+..
T Consensus 29 g~i~v~tG~G-kGKTTaA~GlalRA~g-~G~rV~~vQF~K 66 (196)
T 1g5t_A 29 GIIIVFTGNG-KGKTTAAFGTAARAVG-HGKNVGVVQFIK 66 (196)
T ss_dssp CCEEEEESSS-SCHHHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred ceEEEECCCC-CCHHHHHHHHHHHHHH-CCCeEEEEEeeC
Confidence 4566667776 9999999999999999 999999998776
No 55
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.22 E-value=3.8e-06 Score=68.65 Aligned_cols=42 Identities=31% Similarity=0.288 Sum_probs=36.5
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.+.+|++++. +|+||||++..||..+.. .+.+|++.+.|..+
T Consensus 292 ~GeVI~LVGp-NGSGKTTLl~~LAgll~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGV-NGVGKTTTIGKLARQFEQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECC-TTSSHHHHHHHHHHHHHH-TTCCEEEECCCTTC
T ss_pred CCeEEEEECC-CcccHHHHHHHHHHHhhh-cCCeEEEecCcccc
Confidence 3778888755 899999999999999988 88999999999865
No 56
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.18 E-value=1.2e-05 Score=63.31 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=34.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
++++.+ .+.+|+||||+|.++|..+++ .|.+|++||++..
T Consensus 63 G~ii~I-~G~pGsGKTtLal~la~~~~~-~g~~vlyid~E~s 102 (356)
T 1u94_A 63 GRIVEI-YGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHA 102 (356)
T ss_dssp TSEEEE-ECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCC
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 445555 679999999999999999999 9999999999753
No 57
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.14 E-value=6.4e-06 Score=63.44 Aligned_cols=44 Identities=27% Similarity=0.317 Sum_probs=38.4
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~ 75 (168)
.+.+|++++ .+|+||||++..||..+.. .+.+|++.+.|..+..
T Consensus 101 ~g~vi~lvG-~nGsGKTTll~~Lagll~~-~~g~V~l~g~D~~r~~ 144 (304)
T 1rj9_A 101 KGRVVLVVG-VNGVGKTTTIAKLGRYYQN-LGKKVMFCAGDTFRAA 144 (304)
T ss_dssp SSSEEEEEC-STTSSHHHHHHHHHHHHHT-TTCCEEEECCCCSSTT
T ss_pred CCeEEEEEC-CCCCcHHHHHHHHHHHHHh-cCCEEEEEeecCCChh
Confidence 477888875 5899999999999999998 8999999999987643
No 58
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.00 E-value=2.8e-05 Score=61.37 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=34.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+.++.+ .+.+|+||||+|.++|..+++ .|.+|++||++..
T Consensus 74 G~li~I-~G~pGsGKTtlal~la~~~~~-~g~~vlyi~~E~s 113 (366)
T 1xp8_A 74 GRITEI-YGPESGGKTTLALAIVAQAQK-AGGTCAFIDAEHA 113 (366)
T ss_dssp TSEEEE-EESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCC
T ss_pred CcEEEE-EcCCCCChHHHHHHHHHHHHH-CCCeEEEEECCCC
Confidence 556666 578899999999999999999 9999999999964
No 59
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.88 E-value=2.4e-05 Score=55.19 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=35.6
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.+++|.+++ ..|+||||++..|+..|.. .|.+|.+|..|+..
T Consensus 3 ~~~~i~i~G-~sGsGKTTl~~~L~~~l~~-~g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 3 AMNVWQVVG-YKHSGKTTLMEKWVAAAVR-EGWRVGTVKHHGHG 44 (169)
T ss_dssp -CCEEEEEC-CTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC--
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHhhHh-cCCeeeEEEeCCCC
Confidence 377888877 6699999999999999998 99999999999854
No 60
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.82 E-value=0.00014 Score=53.55 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=31.9
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
.+.++.+..|+||||.+..++..++. .|++|+++-.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~-~g~kVli~~~ 48 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEY-ADVKYLVFKP 48 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEEe
Confidence 46666888899999999999999999 9999999943
No 61
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.82 E-value=3.1e-05 Score=55.91 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=29.7
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+..+.+.+|+||||++.++|. . .|.+|++++++..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~---~-~~~~v~~i~~~~~ 56 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL---L-SGKKVAYVDTEGG 56 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH---H-HCSEEEEEESSCC
T ss_pred EEEEECCCCCCHHHHHHHHHH---H-cCCcEEEEECCCC
Confidence 445578899999999999998 4 6889999999873
No 62
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.78 E-value=7.9e-05 Score=58.40 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=34.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+.++.+ .+.+|+||||++.+++..++. .|.+|++||++..
T Consensus 61 G~iv~I-~G~pGsGKTtLal~la~~~~~-~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 61 GRVIEI-YGPESSGKTTVALHAVANAQA-AGGIAAFIDAEHA 100 (349)
T ss_dssp TSEEEE-EESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCC
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCCC
Confidence 556666 567999999999999999999 9999999999853
No 63
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.76 E-value=0.0002 Score=56.31 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=34.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+.++.++ +.+|+||||++.+++..++. .|.+|++||++...
T Consensus 61 G~i~~I~-GppGsGKSTLal~la~~~~~-~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIF-GQESSGKTTLALHAIAEAQK-MGGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEE-ESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCC
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHh-cCCeEEEEeccccc
Confidence 5566665 45999999999999999999 99999999998643
No 64
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.68 E-value=0.00011 Score=53.19 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=33.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+.++++ .+..|+||||++..++..++. .+.+|++++.+..
T Consensus 23 G~~~~i-~G~~GsGKTtl~~~l~~~~~~-~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 23 GFFIAL-TGEPGTGKTIFSLHFIAKGLR-DGDPCIYVTTEES 62 (235)
T ss_dssp TCEEEE-ECSTTSSHHHHHHHHHHHHHH-HTCCEEEEESSSC
T ss_pred CCEEEE-EcCCCCCHHHHHHHHHHHHHH-CCCeEEEEEcccC
Confidence 456666 577999999999999988888 7889999998864
No 65
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.61 E-value=0.00029 Score=54.53 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=33.0
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeCCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADVYG 73 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~D~~~ 73 (168)
+..+.+.+|+||||++.+++..+++ . |.+|++||+....
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchh
Confidence 3455677999999999999999988 6 8999999997643
No 66
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.58 E-value=9.1e-05 Score=52.33 Aligned_cols=40 Identities=35% Similarity=0.344 Sum_probs=33.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+..|. +.+..|+||||++..||..+.. .|.+|.++|.|..
T Consensus 13 ~~~i~-l~G~~GsGKsT~~~~L~~~l~~-~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVW-LTGLPGSGKTTIATRLADLLQK-EGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEE-EECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CcEEE-EEcCCCCCHHHHHHHHHHHHHh-cCCeEEEeeHHHH
Confidence 44454 4688999999999999999998 8999999998753
No 67
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.57 E-value=0.00035 Score=50.12 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=31.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
++ |.++.+.-|+||||.+..++..+.. +|+||+++-
T Consensus 8 g~-i~v~~G~mgsGKTT~ll~~a~r~~~-~g~kV~v~k 43 (191)
T 1xx6_A 8 GW-VEVIVGPMYSGKSEELIRRIRRAKI-AKQKIQVFK 43 (191)
T ss_dssp CE-EEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CE-EEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 44 5566777799999999999999999 999999995
No 68
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.51 E-value=0.00013 Score=54.68 Aligned_cols=40 Identities=38% Similarity=0.456 Sum_probs=33.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+..|.+ .+-+|+||||++..|+..|.. .|..++++|.|..
T Consensus 4 ~~lIvl-~G~pGSGKSTla~~La~~L~~-~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIIL-TGLPGVGKSTFSKNLAKILSK-NNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEE-ECCTTSSHHHHHHHHHHHHHH-TTCCEEEECTHHH
T ss_pred CEEEEE-EcCCCCCHHHHHHHHHHHHHh-CCCEEEEECchHH
Confidence 455555 667999999999999999998 8999998988853
No 69
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.45 E-value=0.00027 Score=54.27 Aligned_cols=43 Identities=28% Similarity=0.292 Sum_probs=37.5
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~ 74 (168)
.+.++++++ ..|+||||++..||..+.. .+.+|++.+.|..+.
T Consensus 99 ~g~vi~lvG-~nGsGKTTll~~Lag~l~~-~~g~V~l~g~d~~r~ 141 (302)
T 3b9q_A 99 KPAVIMIVG-VNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRA 141 (302)
T ss_dssp SCEEEEEEC-CTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCH
T ss_pred CCcEEEEEc-CCCCCHHHHHHHHHHHHHH-cCCeEEEEeecccch
Confidence 467888876 5899999999999999998 889999999998653
No 70
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.38 E-value=0.00034 Score=54.98 Aligned_cols=43 Identities=28% Similarity=0.292 Sum_probs=37.6
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~ 74 (168)
.+.+|++++ ..|+||||++..||..+.. .+.+|++.+.|..+.
T Consensus 156 ~g~vi~lvG-~nGsGKTTll~~Lag~l~~-~~G~V~l~g~D~~r~ 198 (359)
T 2og2_A 156 KPAVIMIVG-VNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRA 198 (359)
T ss_dssp SSEEEEEEC-CTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCH
T ss_pred CCeEEEEEc-CCCChHHHHHHHHHhhccc-cCCEEEEeccccccc
Confidence 477888876 5899999999999999998 899999999998663
No 71
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.36 E-value=0.0027 Score=49.54 Aligned_cols=43 Identities=26% Similarity=0.239 Sum_probs=34.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~ 75 (168)
..+|++ .+.+|+||||+.-.|...+.. .+.+|.++..|++...
T Consensus 74 ~~~v~l-vG~pgaGKSTLln~L~~~~~~-~~~~v~V~~~dp~~~~ 116 (349)
T 2www_A 74 AFRVGL-SGPPGAGKSTFIEYFGKMLTE-RGHKLSVLAVDPSSCT 116 (349)
T ss_dssp CEEEEE-ECCTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC----
T ss_pred ceEEEE-EcCCCCCHHHHHHHHHHHhhh-cCCeEEEEeecCCCCC
Confidence 556666 578999999999999999988 8999999999997643
No 72
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.35 E-value=0.00024 Score=52.02 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=34.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+.++.+ .+.+|+||||++.+++..++. .|.+|++++++..
T Consensus 23 G~~~~i-~G~~GsGKTtl~~~~~~~~~~-~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 23 RNVVLL-SGGPGTGKTIFSQQFLWNGLK-MGEPGIYVALEEH 62 (247)
T ss_dssp TCEEEE-EECTTSSHHHHHHHHHHHHHH-TTCCEEEEESSSC
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEccCC
Confidence 455555 567999999999999999999 8999999999864
No 73
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.34 E-value=0.00028 Score=54.36 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=34.6
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
-+.++.+.+|+||||++.++|..++. .|.+|+++.++..
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~-~g~~vl~~slE~s 107 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLHSLEMG 107 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHT-TTCEEEEEESSSC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEECCCC
Confidence 45566889999999999999999999 8999999999864
No 74
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.27 E-value=0.00021 Score=54.57 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=32.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~ 74 (168)
..+|++ ++..|+||||+|..|+..+.. .|.++.+||+|-...
T Consensus 5 ~~iIgI-tG~sGSGKSTva~~L~~~lg~-~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 5 HPIISV-TGSSGAGTSTVKHTFDQIFRR-EGVKAVSIEGDAFHR 46 (290)
T ss_dssp SCEEEE-ESCC---CCTHHHHHHHHHHH-HTCCEEEEEGGGGBS
T ss_pred ceEEEE-ECCCCCCHHHHHHHHHHHHhh-cCCCeeEeecchhhc
Confidence 556777 578899999999999999887 788999999998664
No 75
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.21 E-value=0.0014 Score=51.00 Aligned_cols=41 Identities=34% Similarity=0.392 Sum_probs=35.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+.++++ .+..|+||||+...|+..+.. .+.+|.++..|+..
T Consensus 55 g~~v~i-~G~~GaGKSTLl~~l~g~~~~-~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 55 AIRVGI-TGVPGVGKSTTIDALGSLLTA-AGHKVAVLAVDPSS 95 (337)
T ss_dssp SEEEEE-ECCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECGGG
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHhhhh-CCCEEEEEEEcCcc
Confidence 666666 578899999999999998888 88999999998854
No 76
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.19 E-value=0.00039 Score=56.18 Aligned_cols=42 Identities=14% Similarity=0.156 Sum_probs=36.4
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~ 74 (168)
.-+.++.+.+|+||||++.++|...+. .|.+|+++.++....
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~-~g~~vl~fSlEms~~ 238 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLHSLEMGKK 238 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHH-TTCEEEEECSSSCTT
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHH-cCCEEEEEECCCCHH
Confidence 345666889999999999999999999 899999999987553
No 77
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.17 E-value=0.00033 Score=49.27 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=30.9
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
+.|. +.+-.|+||||++..|+..+.. .|.++..++.|
T Consensus 2 ~~I~-i~G~~GsGKsT~~~~L~~~l~~-~g~~~~~~~~~ 38 (194)
T 1nks_A 2 KIGI-VTGIPGVGKSTVLAKVKEILDN-QGINNKIINYG 38 (194)
T ss_dssp EEEE-EEECTTSCHHHHHHHHHHHHHT-TTCCEEEEEHH
T ss_pred eEEE-EECCCCCCHHHHHHHHHHHHHh-cCceEEEEECC
Confidence 4444 4678899999999999999998 89999999754
No 78
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.16 E-value=0.0005 Score=53.62 Aligned_cols=40 Identities=10% Similarity=0.277 Sum_probs=35.3
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
-+.++.+.+|+||||++.++|..++. .|.+|+++.++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSlEms~ 86 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSLEMSA 86 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEESSSCH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCCCCH
Confidence 35556889999999999999999999 99999999998754
No 79
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.15 E-value=0.00082 Score=47.44 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=34.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+++++++ +..|+||||++..|...+.. .|.+|-.|..++..
T Consensus 6 ~~~i~i~-G~sGsGKTTl~~~l~~~l~~-~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFA-AWSGTGKTTLLKKLIPALCA-RGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCC-
T ss_pred ceEEEEE-eCCCCCHHHHHHHHHHhccc-cCCceeEEeeCCCc
Confidence 5677665 57899999999999999988 89999999988744
No 80
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.14 E-value=0.0016 Score=47.45 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=31.1
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
.|-|+.+.-|+||||.+..++..+.. +|+||+++-
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~-~g~kVli~k 63 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQF-AKQHAIVFK 63 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 46666777799999999999999999 999999985
No 81
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.13 E-value=0.00054 Score=50.13 Aligned_cols=41 Identities=17% Similarity=0.141 Sum_probs=33.2
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.+.++.+.+|+|||++|.++|...+...|++|++++++...
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~ 71 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERA 71 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCH
Confidence 45566889999999999999987654268999999998643
No 82
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.10 E-value=0.0037 Score=42.76 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=32.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+.+++ .+..|+||||++..++..+.. .|++++.++...
T Consensus 36 g~~~~l-~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~ 74 (149)
T 2kjq_A 36 GQFIYV-WGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAAS 74 (149)
T ss_dssp CSEEEE-ESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTT
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHH
Confidence 556666 577899999999999999988 899999998754
No 83
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.07 E-value=0.00086 Score=48.28 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=33.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.++|+++ +.+|+||||++.+|+..+.. . ++|.+|+.|+..
T Consensus 30 ~~~i~i~-G~~g~GKTTl~~~l~~~~~~-~-~~~~~i~~d~~~ 69 (221)
T 2wsm_A 30 TVAVNIM-GAIGSGKTLLIERTIERIGN-E-VKIGAMLGDVVS 69 (221)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHHTT-T-SCEEEEECSCCC
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHhcc-C-CeEEEEecCCCC
Confidence 5667665 58899999999999998866 4 899999999853
No 84
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.99 E-value=0.00049 Score=51.10 Aligned_cols=43 Identities=28% Similarity=0.329 Sum_probs=33.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHh----CCCeEEEEeCCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASK----CQLKVGLLDADVYGP 74 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~----~g~rVlliD~D~~~~ 74 (168)
+.+|++ .+..|+||||+|..|+..+... .+++|++||+|-...
T Consensus 22 ~~iI~I-~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 22 PFLIGV-SGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CEEEEE-ECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred cEEEEE-ECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 445555 6889999999999999987641 267899999997553
No 85
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.96 E-value=0.0012 Score=47.35 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=34.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+.+|++ .+..|+||||++..|+..+.. .|.+|.+++.|...
T Consensus 22 ~~~i~i-~G~~GsGKstl~~~l~~~~~~-~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 22 RLVLGI-DGLSRSGKTTLANQLSQTLRE-QGISVCVFHMDDHI 62 (201)
T ss_dssp SEEEEE-EECTTSSHHHHHHHHHHHHHH-TTCCEEEEEGGGGC
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHhh-cCCeEEEeccCccc
Confidence 556666 667899999999999999988 88899999888654
No 86
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.87 E-value=0.0044 Score=57.39 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=34.5
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+.++.+.+|+||||++.++|..++. .|.+|++++++...
T Consensus 734 lVlI~G~PG~GKTtLal~lA~~aa~-~g~~VlyiS~Ees~ 772 (1706)
T 3cmw_A 734 IVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHAL 772 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTSCC
T ss_pred eEEEECCCCCCcHHHHHHHHHHHHH-cCCCeEEEeccchH
Confidence 4455789999999999999999999 99999999998754
No 87
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.83 E-value=0.0013 Score=52.94 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=33.8
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
-+.++.+.+|+||||++.++|...+...|.+|+++++...
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~ 240 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP 240 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 3556678999999999999999998724899999999864
No 88
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.83 E-value=0.0016 Score=52.62 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=33.8
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+.++.+.+|+||||++.++|..++...|.+|++++++...
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~ 244 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA 244 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH
Confidence 5555789999999999999999986358899999998643
No 89
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.81 E-value=0.0012 Score=46.89 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=31.3
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
+.+.+ .+.+|+|||+++..++..+.. .+.+|+.+++.
T Consensus 55 ~~~~l-~G~~GtGKT~la~~i~~~~~~-~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYL-HGSFGVGKTYLLAAIANELAK-RNVSSLIVYVP 91 (202)
T ss_dssp CEEEE-ECSTTSSHHHHHHHHHHHHHT-TTCCEEEEEHH
T ss_pred CeEEE-ECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEhH
Confidence 44554 578899999999999999998 89999998864
No 90
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.79 E-value=0.0016 Score=46.18 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=29.7
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
|.++.+..|+||||++..++..+.. .|++|+++-.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~-~g~~v~~~~~ 39 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKL-GKKKVAVFKP 39 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH-TTCEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEee
Confidence 4555677899999999999999998 9999999743
No 91
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.78 E-value=0.0016 Score=46.40 Aligned_cols=42 Identities=36% Similarity=0.264 Sum_probs=34.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~ 74 (168)
+.+|++ .+..|+||||++..||..+.. .|..+..+|.|.-..
T Consensus 25 g~~i~l-~G~sGsGKSTl~~~La~~l~~-~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 25 GCVIWV-TGLSGSGKSTLACALNQMLYQ-KGKLCYILDGDNVRH 66 (200)
T ss_dssp CEEEEE-ECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHTT
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHh-cCceEEEecCchhhh
Confidence 566666 578899999999999999987 898888899876443
No 92
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.77 E-value=0.0016 Score=45.46 Aligned_cols=41 Identities=24% Similarity=0.286 Sum_probs=34.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+..|++ .+..|+||||++..|+..+.. .|.+++.+|.|...
T Consensus 5 g~~i~l-~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 5 GCTVWL-TGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp CEEEEE-ECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 556665 578999999999999999987 89999999877544
No 93
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.75 E-value=0.0079 Score=55.76 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=35.1
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.+.++.+.+|+||||+|.++|...++ .|.+|++||++...
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~~~-~G~~vlyis~E~s~ 423 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHAL 423 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTSCC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCch
Confidence 34455789999999999999999999 99999999999755
No 94
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.74 E-value=0.0017 Score=46.83 Aligned_cols=40 Identities=23% Similarity=0.197 Sum_probs=32.7
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
...+|+++ +.+|+||||++.+++..+.. . .++..|+.|+.
T Consensus 37 ~~~~i~iv-G~~gvGKTtl~~~l~~~~~~-~-~~~~~i~~d~~ 76 (226)
T 2hf9_A 37 GVVAFDFM-GAIGSGKTLLIEKLIDNLKD-K-YKIACIAGDVI 76 (226)
T ss_dssp TCEEEEEE-ESTTSSHHHHHHHHHHHHTT-T-CCEEEEEEETT
T ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHhcc-C-CeEEEEECCCC
Confidence 35677776 56999999999999998766 4 78999998875
No 95
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=96.74 E-value=0.012 Score=48.61 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=38.5
Q ss_pred CCeEEEEe-cCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 30 VKDVIAVA-SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 30 ~~~vI~v~-s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
++|-|.|+ +..+++||+.+++.|++.|.. +|.||..+-.||+
T Consensus 11 ~~~~i~v~gg~~s~~gk~~~~~~~~~~l~~-~g~~v~~~k~~py 53 (550)
T 1vco_A 11 PRKYVFITGGVVSSLGKGILTSSLGALLRA-RGYRVTAIKIDPY 53 (550)
T ss_dssp CCEEEEEEECSSSCSCHHHHHHHHHHHHHT-TTCCEEEEEEECS
T ss_pred ceeEEEEeCCcccCcchHHHHHHHHHHHHh-CCceeeEeecccc
Confidence 36889999 999999999999999999999 9999999988763
No 96
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.70 E-value=0.0079 Score=56.55 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=35.0
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.+.++.+.+|+||||+|.++|..+++ .|.+|++||++...
T Consensus 384 ~lilI~G~pGsGKTtLaLqia~~~a~-~G~~vlyis~E~s~ 423 (2050)
T 3cmu_A 384 RIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHAL 423 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTTSCC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEcCCCH
Confidence 34555789999999999999999999 89999999999755
No 97
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.69 E-value=0.00085 Score=54.83 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=34.7
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYG 73 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~~ 73 (168)
.+.++.+.+|+||||++.++|..++. . |.+|++++++...
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~-~~g~~vl~~s~E~s~ 283 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGT-AMGKKVGLAMLEESV 283 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTT-TSCCCEEEEESSSCH
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHH-hcCCcEEEEeccCCH
Confidence 35566889999999999999999998 6 9999999998743
No 98
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.67 E-value=0.0013 Score=50.79 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=32.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhC------CCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~------g~rVlliD~D~~ 72 (168)
+.++. +.+.+|+||||++.++|..++. . +.+|++||++..
T Consensus 107 G~i~~-i~G~~GsGKT~la~~la~~~~~-~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 107 RTMTE-FFGEFGSGKTQLCHQLSVNVQL-PPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp TSEEE-EEESTTSSHHHHHHHHHHHTTS-CGGGTCCSCEEEEEESSSC
T ss_pred CcEEE-EECCCCCCHhHHHHHHHHHHhc-ccccCCCCCeEEEEECCCC
Confidence 44444 4677899999999999998766 5 789999999864
No 99
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.66 E-value=0.0022 Score=46.36 Aligned_cols=40 Identities=8% Similarity=0.004 Sum_probs=33.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.+.+.+ .+..|+||||++..++..+.. .+.+++.++++..
T Consensus 52 ~~~~ll-~G~~G~GKT~la~~l~~~~~~-~~~~~~~~~~~~~ 91 (242)
T 3bos_A 52 VQAIYL-WGPVKSGRTHLIHAACARANE-LERRSFYIPLGIH 91 (242)
T ss_dssp CSEEEE-ECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEGGGG
T ss_pred CCeEEE-ECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEHHHH
Confidence 445555 677899999999999999999 8999999998653
No 100
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.65 E-value=0.0016 Score=46.90 Aligned_cols=41 Identities=32% Similarity=0.285 Sum_probs=33.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHH-HhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la-~~~g~rVlliD~D~~~ 73 (168)
+++|.+ .+..|+||||++..|+..+. . .|.++..+|.|...
T Consensus 25 ~~~i~~-~G~~GsGKsT~~~~l~~~l~~~-~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 25 GLTIWL-TGLSASGKSTLAVELEHQLVRD-RRVHAYRLDGDNIR 66 (211)
T ss_dssp CEEEEE-ECSTTSSHHHHHHHHHHHHHHH-HCCCEEEECHHHHT
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHHhccc-cCCcEEEECChHHh
Confidence 555555 57899999999999999998 6 78899999977543
No 101
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.64 E-value=0.0014 Score=45.98 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=28.4
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
+.++.+..|+||||++..|+..+.. .|.+.-.+|.|
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~-~g~~~~~i~~~ 40 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRK-EGVNYKMVSFG 40 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT-TTCCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-cCcceEEEehH
Confidence 4455788999999999999999987 77555566644
No 102
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.61 E-value=0.0032 Score=44.12 Aligned_cols=33 Identities=30% Similarity=0.250 Sum_probs=27.8
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
.++.+..|+||||++..|+..+.. .|..|+-.|
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~-~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQ-KGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEe
Confidence 344678899999999999999988 898887665
No 103
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.59 E-value=0.0027 Score=48.04 Aligned_cols=40 Identities=33% Similarity=0.369 Sum_probs=33.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.++++ .+.+|+||||++.++|..++...|.+|++++.+.
T Consensus 35 G~~~~i-~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 35 GEVIMV-TSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp TCEEEE-EESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CeEEEE-EeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 555555 6788999999999999999872488999999875
No 104
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.59 E-value=0.0018 Score=53.66 Aligned_cols=39 Identities=41% Similarity=0.342 Sum_probs=33.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.+| ++.+..|+||||++..|+..+.. .|+++.++|.|.
T Consensus 372 ~~~I-~l~G~~GsGKSTia~~La~~L~~-~G~~~~~ld~D~ 410 (546)
T 2gks_A 372 GFCV-WLTGLPCAGKSTIAEILATMLQA-RGRKVTLLDGDV 410 (546)
T ss_dssp CEEE-EEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECHHH
T ss_pred ceEE-EccCCCCCCHHHHHHHHHHHhhh-cCCeEEEECchH
Confidence 4444 44688899999999999999998 999999999885
No 105
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.58 E-value=0.0035 Score=44.11 Aligned_cols=34 Identities=35% Similarity=0.215 Sum_probs=28.0
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
.++.+..|+||||++..|+..+.. .|.+|+..+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~-~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEK-RGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH-CCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEeeC
Confidence 344678899999999999999988 8999987654
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.56 E-value=0.0022 Score=44.78 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=31.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
++.+.+ .+..|+||||++..++..+....|.+|+.+++.
T Consensus 38 g~~~~l-~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 38 GKGLTF-VGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp CCEEEE-CCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 455555 678999999999999999983289888887654
No 107
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.51 E-value=0.0072 Score=56.83 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=34.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
++.| ++.+.+|+|||++|.++|....+ .|.+|++||++..
T Consensus 1427 g~~v-ll~GppGtGKT~LA~ala~ea~~-~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIV-EIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHA 1466 (2050)
T ss_dssp TSEE-EEECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTTSC
T ss_pred CeEE-EEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEEcccc
Confidence 4444 44688899999999999999998 9999999999864
No 108
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.49 E-value=0.0014 Score=46.74 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=26.3
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.+++|++ .+..|+||||++..|+..+ | ..+||.|..
T Consensus 17 ~~~~I~l-~G~~GsGKSTla~~L~~~l----g--~~~i~~d~~ 52 (202)
T 3t61_A 17 FPGSIVV-MGVSGSGKSSVGEAIAEAC----G--YPFIEGDAL 52 (202)
T ss_dssp CSSCEEE-ECSTTSCHHHHHHHHHHHH----T--CCEEEGGGG
T ss_pred CCeEEEE-ECCCCCCHHHHHHHHHHHh----C--CEEEeCCcC
Confidence 3455555 6888999999999998876 3 346777764
No 109
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.42 E-value=0.0032 Score=52.96 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=34.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
...+.++.+-.|+||||++..|+..|.+ .|.+++.+|.|...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~-~G~~~v~lDgD~iR 92 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 92 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEESHHHHT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEechHHhh
Confidence 3345566788999999999999999988 89999999877544
No 110
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.40 E-value=0.0033 Score=51.77 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=35.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
++.+.++.+-.|+||||++..||..|.. .+.++.+++.|.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~-~~~d~~v~s~D~ 73 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW-IGVPTKVFNVGE 73 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh-cCCCeEEecccH
Confidence 5567777899999999999999999988 899999998885
No 111
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=96.40 E-value=0.0037 Score=50.56 Aligned_cols=74 Identities=18% Similarity=0.124 Sum_probs=52.1
Q ss_pred eecCceeeccccCCccc-ccCCCCeEEEEecC---CCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC
Q 030973 9 TRLGGVRYYAAFGSKDL-KIDGVKDVIAVASG---KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (168)
Q Consensus 9 e~~~~~r~~~~~~~~~~-~~~~~~~vI~v~s~---kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~ 84 (168)
|.|...+..+.+...+. +..+.+|.|.|++- .-|+||||++..|+..|.+ .|+++.+- .+.||+.=.||+..
T Consensus 20 e~YG~~kAKv~~~~l~~~~~~~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~-lgk~~~~~---lRePSlGP~FGiKG 95 (543)
T 3do6_A 20 YPYGHYIAKIDHRFLKSLENHEDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNR-IGKKSIVT---LREPSLGPTLGLKG 95 (543)
T ss_dssp EEETTTEEEECTTHHHHTTTSCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHH-TTCCEEEE---ECCCCHHHHHHSCC
T ss_pred HhCCCccEEecHHHhhhhhcCCCCeEEEEEecCCCCCCCCccchHHHHHHHHHh-cCCeeEEE---EecCCCCCcCCccc
Confidence 44555555544433221 12345788877764 5699999999999999999 99998764 46788888898876
Q ss_pred CC
Q 030973 85 KP 86 (168)
Q Consensus 85 ~~ 86 (168)
..
T Consensus 96 GA 97 (543)
T 3do6_A 96 GA 97 (543)
T ss_dssp ST
T ss_pred cc
Confidence 54
No 112
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.39 E-value=0.0039 Score=44.49 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=29.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
+..|++ .+..|+||||++..|+..+.. .+..|..+..
T Consensus 9 ~~~I~l-~G~~GsGKsT~~~~L~~~l~~-~~~~v~~~~~ 45 (215)
T 1nn5_A 9 GALIVL-EGVDRAGKSTQSRKLVEALCA-AGHRAELLRF 45 (215)
T ss_dssp CCEEEE-EESTTSSHHHHHHHHHHHHHH-TTCCEEEEES
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCcEEEeeC
Confidence 344555 677899999999999999998 8988866543
No 113
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.38 E-value=0.0029 Score=52.72 Aligned_cols=38 Identities=29% Similarity=0.257 Sum_probs=32.7
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCC-CeEEEEeCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADV 71 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g-~rVlliD~D~ 71 (168)
.+.++.+-.|+||||++..|+..|.. .| .++.++|.|.
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~-~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQ-QGGRSVSLLLGDT 435 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH-HCSSCEEEEEHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcc-cCCceEEEECcHH
Confidence 44555788899999999999999998 77 8999999875
No 114
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.35 E-value=0.0038 Score=47.85 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=31.4
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHH-HhCCCeEEEEeCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDAD 70 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la-~~~g~rVlliD~D 70 (168)
+.+.+ .+..|+|||+++..+|..+. + .|.+|+.+.+.
T Consensus 153 ~~lll-~G~~GtGKT~La~aia~~~~~~-~g~~v~~~~~~ 190 (308)
T 2qgz_A 153 KGLYL-YGDMGIGKSYLLAAMAHELSEK-KGVSTTLLHFP 190 (308)
T ss_dssp CEEEE-ECSTTSSHHHHHHHHHHHHHHH-SCCCEEEEEHH
T ss_pred ceEEE-ECCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEHH
Confidence 44544 67789999999999999999 8 99999998764
No 115
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.32 E-value=0.005 Score=43.73 Aligned_cols=34 Identities=26% Similarity=0.211 Sum_probs=27.2
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
+.++.+..|+||||++..|+..+.. .| +|+..+.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~-~g-~~~~~~~ 39 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIEL-KR-DVYLTEW 39 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT-TS-CEEEEET
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhh-cC-CEEEecC
Confidence 4455788999999999999999987 77 7765544
No 116
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.22 E-value=0.01 Score=42.53 Aligned_cols=40 Identities=35% Similarity=0.496 Sum_probs=32.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+.+|++ .+..|+||||++..|+..+.. .|.++-.|..|..
T Consensus 22 g~~v~I-~G~sGsGKSTl~~~l~~~~~~-~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 22 RQLVAL-SGAPGSGKSTLSNPLAAALSA-QGLPAEVVPMDGF 61 (208)
T ss_dssp CEEEEE-ECCTTSCTHHHHHHHHHHHHH-TTCCEEEEESGGG
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHhh-cCCceEEEecCCC
Confidence 667776 578899999999999999987 6777777777653
No 117
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.19 E-value=0.0054 Score=47.67 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=31.7
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHh-----CCCeEEEEeCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVY 72 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~-----~g~rVlliD~D~~ 72 (168)
.+..+.+.+|+||||++.++|...+.. .+.+|++||++..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 455567888999999999999875431 2789999999864
No 118
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=96.19 E-value=0.0057 Score=53.09 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=37.0
Q ss_pred cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhC-----CCeEEEEe
Q 030973 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKC-----QLKVGLLD 68 (168)
Q Consensus 27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~-----g~rVlliD 68 (168)
++..++.|.|++...|+|||++++.|++.|++ + |.||..+=
T Consensus 30 ~~~~~~~l~I~gt~s~vGKT~vt~gL~r~l~~-~~~~~~G~~V~~fK 75 (831)
T 4a0g_A 30 LPLNHPTYLIWSANTSLGKTLVSTGIAASFLL-QQPSSSATKLLYLK 75 (831)
T ss_dssp EECSSCEEEEEESSSSSCHHHHHHHHHHHHHS-CSSCCTTCEEEEEE
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHHHHh-cccccCCceEEEEc
Confidence 34457899999999999999999999999999 8 99999886
No 119
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.17 E-value=0.0054 Score=46.90 Aligned_cols=43 Identities=35% Similarity=0.419 Sum_probs=33.2
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHH--HhCCCeEEEEeCCCCC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALA--SKCQLKVGLLDADVYG 73 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la--~~~g~rVlliD~D~~~ 73 (168)
..+.+|+++ +..|+||||++..|+..+. - .+.+|.+|++|-..
T Consensus 78 ~~g~iigI~-G~~GsGKSTl~~~L~~~l~~~~-~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIA-GSVAVGKSTTARVLQALLSRWP-EHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEE-ECTTSSHHHHHHHHHHHHTTST-TCCCEEEEEGGGGB
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHhhCC-CCCeEEEEecCCcc
Confidence 346777775 6789999999999998876 3 45679999888643
No 120
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.17 E-value=0.0039 Score=43.77 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=30.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
++++++++ ..|+||||++..|+..+.. .|.++-.|-.|.
T Consensus 2 ~~~v~IvG-~SGsGKSTL~~~L~~~~~~-~g~~~G~I~~dg 40 (171)
T 2f1r_A 2 SLILSIVG-TSDSGKTTLITRMMPILRE-RGLRVAVVKRHA 40 (171)
T ss_dssp -CEEEEEE-SCHHHHHHHHHHHHHHHHH-TTCCEEEEEC--
T ss_pred ceEEEEEC-CCCCCHHHHHHHHHHHhhh-cCCceEEEEEcC
Confidence 56888877 7899999999999999998 887766565554
No 121
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.17 E-value=0.0059 Score=44.55 Aligned_cols=36 Identities=19% Similarity=0.079 Sum_probs=29.5
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
-|-|+.+.=|+||||.....+..+.. +|++|+++-.
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~-~g~kvli~kp 64 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIY-AKQKVVVFKP 64 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCceEEEEe
Confidence 35555666799999999999999988 9999999943
No 122
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.11 E-value=0.0036 Score=47.51 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=29.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.+.+.++++.+|+||||++..|+..+ +...+.||+|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~----~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET----QGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT----TTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh----CCCeEEEechHh
Confidence 45677789999999999999987754 224678888753
No 123
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.10 E-value=0.0071 Score=45.37 Aligned_cols=39 Identities=36% Similarity=0.330 Sum_probs=30.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhC----------CCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC----------QLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~----------g~rVlliD~D~ 71 (168)
+.++++ .+.+|+||||++..++..++. . +.+|++++++.
T Consensus 30 G~i~~i-~G~~GsGKTtl~~~l~~~~~~-g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 30 GTVGAL-VSPGGAGKSMLALQLAAQIAG-GPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TSEEEE-EESTTSSHHHHHHHHHHHHHT-CCCTTCCCCCCCCCEEEEESSS
T ss_pred CCEEEE-EcCCCCCHHHHHHHHHHHHhc-CCCcCCCccCCCccEEEEECCC
Confidence 555555 578899999999999997765 3 46788888765
No 124
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.09 E-value=0.0031 Score=43.75 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=25.0
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
+.++++-+|+||||++..|+..+ +...+.++.|
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l----~~~~~~~~~D 37 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL----PEPWLAFGVD 37 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS----SSCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc----CCCeEEeccc
Confidence 55668899999999999988765 3456666665
No 125
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.07 E-value=0.0076 Score=42.91 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=28.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
+++|++ .+..|+||||++..|+..+.. .+..|.++.
T Consensus 10 ~~~I~l-~G~~GsGKST~~~~L~~~l~~-~~~~~~~~~ 45 (212)
T 2wwf_A 10 GKFIVF-EGLDRSGKSTQSKLLVEYLKN-NNVEVKHLY 45 (212)
T ss_dssp SCEEEE-EESTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCEEEE-EcCCCCCHHHHHHHHHHHHHH-cCCcEEEEe
Confidence 345555 677899999999999999988 888886554
No 126
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.06 E-value=0.012 Score=42.89 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=31.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHH-HhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la-~~~g~rVlliD~D~ 71 (168)
+.++++ .+..|+||||++..++.... . .+.++++++.+.
T Consensus 30 G~~~~l-~GpnGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~ 69 (251)
T 2ehv_A 30 GTTVLL-TGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEE-ECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS
T ss_pred CcEEEE-EeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 667776 57889999999999996555 5 678889988765
No 127
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.04 E-value=0.0056 Score=50.27 Aligned_cols=39 Identities=8% Similarity=0.036 Sum_probs=32.2
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHH-hCCCeEEEEeCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALAS-KCQLKVGLLDADV 71 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~-~~g~rVlliD~D~ 71 (168)
.+.++.+-.|+||||++..||..|.. ..++.+-++|.|.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 34455778899999999999999974 2568888999997
No 128
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.01 E-value=0.0041 Score=47.73 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=30.8
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHH-----------hCC----CeEEEEeCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALAS-----------KCQ----LKVGLLDADVY 72 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~-----------~~g----~rVlliD~D~~ 72 (168)
.+.++.+.+|+|||++|.++|...+. ..| .+|++||++..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 35555678999999999999987531 135 79999999864
No 129
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.98 E-value=0.007 Score=43.93 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=31.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHh-----CCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~-----~g~rVlliD~D~~ 72 (168)
+.++++ .+.+|+||||++..++...+.. .+.+|++++.+..
T Consensus 24 G~~~~i-~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~ 69 (243)
T 1n0w_A 24 GSITEM-FGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT 69 (243)
T ss_dssp TSEEEE-ECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred CeEEEE-ECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC
Confidence 455555 5689999999999999864331 1679999999863
No 130
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.92 E-value=0.01 Score=45.88 Aligned_cols=42 Identities=29% Similarity=0.318 Sum_probs=32.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHh-CCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~-~g~rVlliD~D~~~ 73 (168)
+.+|++ .+..|+||||++..|+..+... .+.+|.+|..|...
T Consensus 92 p~iigI-~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 92 PYIIGI-AGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CEEEEE-ECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 445665 6888999999999999888631 25689999998744
No 131
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.91 E-value=0.0057 Score=41.83 Aligned_cols=29 Identities=31% Similarity=0.318 Sum_probs=22.2
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli 67 (168)
+.++.+..|+||||++..| .+ .|..++-+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L----~~-~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL----KE-RGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH----HH-TTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH----HH-CCCcEEEH
Confidence 4556789999999999888 45 67776554
No 132
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.91 E-value=0.0064 Score=42.43 Aligned_cols=34 Identities=29% Similarity=0.276 Sum_probs=24.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
++.|.+ .+..|+||||++..||..+ |. -++|.|.
T Consensus 5 ~~~i~l-~G~~GsGKst~a~~La~~l----~~--~~i~~d~ 38 (185)
T 3trf_A 5 LTNIYL-IGLMGAGKTSVGSQLAKLT----KR--ILYDSDK 38 (185)
T ss_dssp CCEEEE-ECSTTSSHHHHHHHHHHHH----CC--CEEEHHH
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHHh----CC--CEEEChH
Confidence 455555 5679999999999998766 33 3456654
No 133
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.86 E-value=0.013 Score=42.47 Aligned_cols=36 Identities=31% Similarity=0.344 Sum_probs=30.3
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
.+.++.+-.|+||||.+..|+..|.. .|.+|+....
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v~~~~~ 42 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRE-RGIEVQLTRE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEEEES
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCcccccC
Confidence 34455788999999999999999998 9999987653
No 134
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.85 E-value=0.009 Score=45.67 Aligned_cols=39 Identities=21% Similarity=0.126 Sum_probs=31.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
...+.+ .+..|+||||++..++..+.. .+.+++.++++.
T Consensus 37 ~~~lll-~G~~GtGKT~la~~i~~~~~~-~~~~~~~i~~~~ 75 (324)
T 1l8q_A 37 YNPIFI-YGSVGTGKTHLLQAAGNEAKK-RGYRVIYSSADD 75 (324)
T ss_dssp CSSEEE-ECSSSSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred CCeEEE-ECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEHHH
Confidence 344555 567899999999999999988 799999998753
No 135
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.85 E-value=0.0066 Score=41.94 Aligned_cols=35 Identities=26% Similarity=0.190 Sum_probs=25.2
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.+.++.+.+|+||||++..|+.. . .| ...|+.|.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~--~-~~--~~~i~~d~ 36 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK--N-PG--FYNINRDD 36 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH--S-TT--EEEECHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh--c-CC--cEEecHHH
Confidence 345666889999999999988872 2 33 55666654
No 136
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.82 E-value=0.0076 Score=42.05 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=19.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+++|+ +.+..|+||||++..|+..+
T Consensus 6 ~~~I~-l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVF-VLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEE-EEESTTSSHHHHHHHHHHHH
T ss_pred CcEEE-EECCCCCCHHHHHHHHHHHh
Confidence 34444 46788999999999988765
No 137
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.80 E-value=0.006 Score=43.85 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=29.2
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHH-----HhCC-CeEEEEeCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALA-----SKCQ-LKVGLLDAD 70 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la-----~~~g-~rVlliD~D 70 (168)
..|.++.+..|+|||+.|..++..++ + .| ++|.+..+|
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~-~g~r~v~~~~~~ 48 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDE-NGIRRKVFTNIK 48 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCT-TSCCCCEEECCT
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccc-cCceEEEEecCC
Confidence 34667789999999999988877665 5 67 777667655
No 138
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.79 E-value=0.012 Score=40.58 Aligned_cols=39 Identities=31% Similarity=0.308 Sum_probs=28.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHh------CCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASK------CQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~------~g~rVlliD~D 70 (168)
.+.+ ++.+..|+|||+++..++..+... .+.+++.+++.
T Consensus 43 ~~~~-ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (195)
T 1jbk_A 43 KNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG 87 (195)
T ss_dssp SCEE-EEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH
T ss_pred CCce-EEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHH
Confidence 3444 446888999999999999988651 26777777753
No 139
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.67 E-value=0.013 Score=48.68 Aligned_cols=33 Identities=42% Similarity=0.496 Sum_probs=29.9
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli 67 (168)
+.++.+.+|+||||++..++..+.. .|++|+++
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~-~g~~Vl~~ 238 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAES-LGLEVGLC 238 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEe
Confidence 5666889999999999999999999 99999987
No 140
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.63 E-value=0.018 Score=41.12 Aligned_cols=33 Identities=36% Similarity=0.229 Sum_probs=29.2
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
++-+--|+||||.+..|+..|.+ .|.+|++...
T Consensus 4 ~~EG~DGsGKsTq~~~L~~~L~~-~g~~v~~tre 36 (197)
T 3hjn_A 4 TFEGIDGSGKSTQIQLLAQYLEK-RGKKVILKRE 36 (197)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEES
T ss_pred EEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEC
Confidence 44678899999999999999999 9999988764
No 141
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.61 E-value=0.0056 Score=45.37 Aligned_cols=39 Identities=21% Similarity=0.357 Sum_probs=29.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.+.+.++.+.+|+||||++..|+..+ +..+.++|.|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l----~~~~~~~~~D~~r 69 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF----QGNIVIIDGDSFR 69 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT----TTCCEEECGGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc----CCCcEEEecHHHH
Confidence 34556668899999999999988755 3356788998754
No 142
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.58 E-value=0.0085 Score=45.57 Aligned_cols=42 Identities=26% Similarity=0.162 Sum_probs=30.8
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCC--CeEE-EEeCCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQ--LKVG-LLDADVYG 73 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g--~rVl-liD~D~~~ 73 (168)
.+.+|++ .+..|+||||++..|+..+.. .| .++. +|..|...
T Consensus 30 ~~~ii~I-~G~sGsGKSTla~~L~~~l~~-~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 30 CPLFIFF-SGPQGSGKSFTSIQIYNHLME-KYGGEKSIGYASIDDFY 74 (290)
T ss_dssp SCEEEEE-ECCTTSSHHHHHHHHHHHHHH-HHGGGSCEEEEEGGGGB
T ss_pred CCeEEEE-ECCCCCCHHHHHHHHHHHhhh-cCCCCceEEEecccccc
Confidence 3556666 678899999999999999986 44 4444 44888643
No 143
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=95.57 E-value=0.039 Score=43.07 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=34.9
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
..+.|.+++..-.+||||++..|.+.+.+ +|.++-.+-
T Consensus 151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~-~G~~a~~~~ 188 (349)
T 2obn_A 151 PCRRVLTVGTDMAIGKMSTSLELHWAAKL-RGWRSKFLA 188 (349)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHH-TTCCEEEEC
T ss_pred cceEEEEcCCCccccceeHHHHHHHHHHh-cCCcEEEEe
Confidence 47899999999999999999999999999 999988843
No 144
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.57 E-value=0.01 Score=41.45 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEEecCCCCCChhhHHHHHHHHH
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
.+.++.+..|+||||++..|+..+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 455567889999999999998766
No 145
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.55 E-value=0.0032 Score=44.98 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=28.6
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
.++.+..|+||||++..|+..+.. .|.+|.++..
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~-~g~~v~~~~~ 36 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRA-AGRSVATLAF 36 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHE-EEEEEEEEES
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEEee
Confidence 344678899999999999999988 8888888764
No 146
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.53 E-value=0.015 Score=43.82 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=31.5
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
..++.+..|+|||++|..+|..+.. .+.+++.+|+...
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~-~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFD-TEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHS-CGGGEEEEEGGGC
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcC-CCcceEEeecccc
Confidence 3444677899999999999999988 7888999998753
No 147
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.51 E-value=0.011 Score=40.57 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=23.4
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.++.+..|+||||++..|+..+. . -++|.|.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~----~--~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK----Y--PIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC----C--CEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----C--eeecCcc
Confidence 344578899999999999887653 2 3467765
No 148
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.49 E-value=0.017 Score=48.66 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=31.7
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
++++.+.+|+|||++.+++...+.+ .|++||++-.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~-~~~~ILv~a~ 241 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVK-QGLKVLCCAP 241 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEES
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEcC
Confidence 7788899999999999999999999 9999998764
No 149
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.46 E-value=0.011 Score=40.71 Aligned_cols=37 Identities=30% Similarity=0.361 Sum_probs=27.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhC-------CCeEEEEeC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC-------QLKVGLLDA 69 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~-------g~rVlliD~ 69 (168)
.+.+ ++.+..|+|||+++..++..+.. . +.+++.+++
T Consensus 43 ~~~v-ll~G~~G~GKT~la~~~~~~~~~-~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 43 KNNP-ILLGDPGVGKTAIVEGLAIKIVQ-GDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp SCEE-EEESCGGGCHHHHHHHHHHHHHT-TCSCTTTTTCEEEEECH
T ss_pred CCce-EEECCCCCCHHHHHHHHHHHHHh-cCCcchhcCCeEEEEeH
Confidence 3344 55788899999999999998865 3 566666654
No 150
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.44 E-value=0.014 Score=45.40 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=27.1
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+.+.++++..|+||||+|..||..+ + +.+|++|..
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l----~--~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKF----N--GEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT----T--EEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHc----C--Cceeccccc
Confidence 3355567889999999999888765 2 688999965
No 151
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.40 E-value=0.012 Score=40.38 Aligned_cols=35 Identities=37% Similarity=0.521 Sum_probs=24.5
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+++|.+ .+..|+||||++..||..| |.+ ++|+|.
T Consensus 6 ~~~~i~l-~G~~GsGKSTva~~La~~l----g~~--~id~D~ 40 (168)
T 1zuh_A 6 HMQHLVL-IGFMGSGKSSLAQELGLAL----KLE--VLDTDM 40 (168)
T ss_dssp --CEEEE-ESCTTSSHHHHHHHHHHHH----TCC--EEEHHH
T ss_pred ccceEEE-ECCCCCCHHHHHHHHHHHh----CCC--EEEChH
Confidence 4677777 5678999999999988776 334 456654
No 152
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.39 E-value=0.014 Score=40.81 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=19.2
Q ss_pred EEEEecCCCCCChhhHHHHHHHHH
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
.+.++.+..|+||||++..|+..+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 344557889999999999988765
No 153
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.38 E-value=0.01 Score=44.02 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=23.7
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.++.+..|+||||++..||..+ +. .+|+.|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~----~~--~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET----GW--PVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CC--CEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcC----CC--eEEeccH
Confidence 34557889999999999998765 32 4567765
No 154
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.29 E-value=0.015 Score=41.27 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=20.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
++.|++ .+..|+||||++..||..+
T Consensus 25 ~~~i~l-~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFL-TGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEE-ECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEE-EcCCCCCHHHHHHHHHHHc
Confidence 556655 6788999999999999876
No 155
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.27 E-value=0.016 Score=41.07 Aligned_cols=35 Identities=31% Similarity=0.312 Sum_probs=24.2
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
..+++|++ .+..|+||||++..|+..+ |. ..||+|
T Consensus 13 ~~~~~I~l-~G~~GsGKsT~~~~L~~~~----g~--~~i~~d 47 (203)
T 1ukz_A 13 DQVSVIFV-LGGPGAGKGTQCEKLVKDY----SF--VHLSAG 47 (203)
T ss_dssp TTCEEEEE-ECSTTSSHHHHHHHHHHHS----SC--EEEEHH
T ss_pred CCCcEEEE-ECCCCCCHHHHHHHHHHHc----Cc--eEEeHH
Confidence 34555555 6788999999999888654 43 445554
No 156
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.23 E-value=0.02 Score=39.51 Aligned_cols=35 Identities=31% Similarity=0.510 Sum_probs=25.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+.+|++ .+..|+||||++..|+..+ | ..++|.|..
T Consensus 8 g~~i~l-~G~~GsGKSTl~~~l~~~~----g--~~~i~~d~~ 42 (175)
T 1knq_A 8 HHIYVL-MGVSGSGKSAVASEVAHQL----H--AAFLDGDFL 42 (175)
T ss_dssp SEEEEE-ECSTTSCHHHHHHHHHHHH----T--CEEEEGGGG
T ss_pred CcEEEE-EcCCCCCHHHHHHHHHHhh----C--cEEEeCccc
Confidence 555555 6788999999999988765 3 356787754
No 157
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.20 E-value=0.0078 Score=40.63 Aligned_cols=34 Identities=21% Similarity=0.018 Sum_probs=27.5
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
++.+..|+|||++|..++....+ .+...+ +++..
T Consensus 28 ll~G~~GtGKt~lA~~i~~~~~~-~~~~~v-~~~~~ 61 (145)
T 3n70_A 28 WLYGAPGTGRMTGARYLHQFGRN-AQGEFV-YRELT 61 (145)
T ss_dssp EEESSTTSSHHHHHHHHHHSSTT-TTSCCE-EEECC
T ss_pred EEECCCCCCHHHHHHHHHHhCCc-cCCCEE-EECCC
Confidence 34678899999999999887776 677877 88764
No 158
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.18 E-value=0.016 Score=40.98 Aligned_cols=25 Identities=40% Similarity=0.490 Sum_probs=19.9
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHH
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+.+.++.+..|+||||++..|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344557889999999999998876
No 159
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.17 E-value=0.016 Score=44.95 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=29.8
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhC--------CCeEEEEeCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKC--------QLKVGLLDAD 70 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~--------g~rVlliD~D 70 (168)
..++.+.+|+|||+++..++..+.. . +..++.+++.
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~~~~-~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNEIEE-VKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH-HHHHSSSSTTCEEEEEEHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHH-HhhhhcCCCCceEEEEECc
Confidence 4455788999999999999999877 5 7888888864
No 160
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.15 E-value=0.026 Score=45.42 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=29.6
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCC-eEEEEeC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQL-KVGLLDA 69 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~-rVlliD~ 69 (168)
..++.+.+|+||||++..++..|.. .|. +|+++-.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~-~~~~~il~~a~ 82 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIS-TGETGIILAAP 82 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH-TTCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh-cCCceEEEecC
Confidence 6667889999999999999999998 776 7877743
No 161
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.15 E-value=0.022 Score=42.01 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=29.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCe-EEEEe
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLK-VGLLD 68 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~r-VlliD 68 (168)
++.|+| .+-.|+||||.+..|+..|.. .|.+ |.+.-
T Consensus 27 ~~~i~~-eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVI-EGLEGAGKSTAIQVVVETLQQ-NGIDHITRTR 63 (236)
T ss_dssp CCEEEE-EESTTSCHHHHHHHHHHHHHH-TTCCCEEEEE
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHh-cCCCeeeeec
Confidence 345544 678899999999999999999 9999 65553
No 162
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=95.11 E-value=0.028 Score=46.42 Aligned_cols=41 Identities=29% Similarity=0.398 Sum_probs=37.9
Q ss_pred CeEEEEe-cCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVA-SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~-s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+|-|.|+ +..+++||+.+++.|++.|.+ +|.||..+-.||+
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~-~g~~v~~~k~~py 44 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILEA-RGLNVTIMKLDPY 44 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHT-TTCCEEEEEEECC
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHHh-CCceeeeeecccc
Confidence 5789999 999999999999999999999 9999999988753
No 163
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.06 E-value=0.037 Score=40.75 Aligned_cols=38 Identities=24% Similarity=0.153 Sum_probs=32.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
+-.|-|+.+.-|+||||.+..++..+.. +|+||+++-.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~-~g~kvli~kp 55 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI-AQYKCLVIKY 55 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT-TTCCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH-CCCeEEEEee
Confidence 3446676777789999999999999999 9999999873
No 164
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.04 E-value=0.015 Score=41.43 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=25.0
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+.+....+..|+||||++..|+..+ | .-+||+|..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l----g--~~vid~D~~ 46 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY----G--AHVVNVDRI 46 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH----C--CEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc----C--CEEEECcHH
Confidence 3444446788999999998888754 4 456888764
No 165
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.00 E-value=0.026 Score=41.46 Aligned_cols=41 Identities=32% Similarity=0.363 Sum_probs=30.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHh----CCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASK----CQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~----~g~rVlliD~D~~ 72 (168)
+.+|+++ +..|+||||++..|+..+... ..+++.+++.|..
T Consensus 25 g~iigI~-G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~ 69 (245)
T 2jeo_A 25 PFLIGVS-GGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF 69 (245)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcC
Confidence 6678875 678999999999998877431 1456778888753
No 166
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.99 E-value=0.021 Score=41.84 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=26.8
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhC----CCeEEEEeC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKC----QLKVGLLDA 69 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~----g~rVlliD~ 69 (168)
.+.++.+-.|+||||.+..|+..|.. . |.+|++.-.
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~-~~~~~g~~v~~~re 65 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQE-RLGPAGRHVVVTRE 65 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHH-HHGGGTCCEEEEES
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh-hccccceeeeeecC
Confidence 34455789999999999999999988 7 999976643
No 167
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.98 E-value=0.022 Score=44.81 Aligned_cols=35 Identities=29% Similarity=0.183 Sum_probs=30.1
Q ss_pred ecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+.+..|+||||++..++..+.. .|.+|+++|-+..
T Consensus 40 i~G~~G~GKs~~~~~~~~~~~~-~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 40 ILAKPGAGKSFTAKMLLLREYM-QGSRVIIIDPERE 74 (392)
T ss_dssp EECCTTSSHHHHHHHHHHHHHT-TTCCEEEEESSCC
T ss_pred EEcCCCCCHHHHHHHHHHHHHH-CCCEEEEEeCCcC
Confidence 3578899999999999998888 8999999987643
No 168
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.97 E-value=0.011 Score=41.11 Aligned_cols=31 Identities=55% Similarity=0.629 Sum_probs=23.0
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.++.+..|+||||++..||..+. .. ++|.|.
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg----~~--~id~D~ 35 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKALG----VG--LLDTDV 35 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT----CC--EEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHcC----CC--EEeCch
Confidence 34468899999999999988663 33 567664
No 169
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.94 E-value=0.026 Score=39.23 Aligned_cols=23 Identities=39% Similarity=0.471 Sum_probs=18.7
Q ss_pred EEEecCCCCCChhhHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+.++.+..|+||||++..||..+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 34456889999999999998765
No 170
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.94 E-value=0.015 Score=44.93 Aligned_cols=35 Identities=29% Similarity=0.292 Sum_probs=26.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
++.+.++.+..|+||||++..||..+ + ..+||+|.
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l----~--~~iis~Ds 38 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADAL----P--CELISVDS 38 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS----C--EEEEEECT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc----C--CcEEeccc
Confidence 33455567889999999999888754 3 56788775
No 171
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.91 E-value=0.042 Score=42.16 Aligned_cols=42 Identities=40% Similarity=0.423 Sum_probs=32.6
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCC-CeEEEEeCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVY 72 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g-~rVlliD~D~~ 72 (168)
.+.+|++ .+..|+||||++..|+..+....| .+|.+|-.|..
T Consensus 89 ~g~ivgI-~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 89 VPFIIGV-AGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCEEEEE-ECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCEEEEE-ECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 3667777 578899999999999998875234 57888887764
No 172
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.90 E-value=0.02 Score=44.19 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=30.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhC------CCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~------g~rVlliD~D~ 71 (168)
.+.+ ++.+.+|+||||++..++..+.. . +..++.+++..
T Consensus 44 ~~~v-ll~G~~G~GKT~l~~~~~~~~~~-~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 44 PSNA-LLYGLTGTGKTAVARLVLRRLEA-RASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCCE-EECBCTTSSHHHHHHHHHHHHHH-HHHHHTCCEEEEEEETTT
T ss_pred CCcE-EEECCCCCCHHHHHHHHHHHHHH-HHhccCCCeEEEEEECCc
Confidence 4444 45788999999999999999876 4 77888888754
No 173
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.89 E-value=0.19 Score=39.28 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=27.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
...|++ .+..|+||||+...++..+....+.+++.++
T Consensus 123 ~g~i~I-~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 123 RGLVLV-TGPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp SEEEEE-ECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 444544 6788999999999999888773366776655
No 174
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.86 E-value=0.041 Score=42.59 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=30.9
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVY 72 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~ 72 (168)
.+.+ .+..|+||||++..++..+.. . +..++.+++...
T Consensus 46 ~~li-~G~~G~GKTtl~~~l~~~~~~-~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 46 RATL-LGRPGTGKTVTLRKLWELYKD-KTTARFVYINGFIY 84 (389)
T ss_dssp EEEE-ECCTTSSHHHHHHHHHHHHTT-SCCCEEEEEETTTC
T ss_pred eEEE-ECCCCCCHHHHHHHHHHHHhh-hcCeeEEEEeCccC
Confidence 4544 788999999999999998877 6 688999997553
No 175
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.85 E-value=0.034 Score=43.23 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=25.6
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+.++.+-.|+||||++..||..+ ..-+||+|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l------~~eiIs~Ds~q 75 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF------PLEVINSDKMQ 75 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS------CEEEEECCSST
T ss_pred eEEEECCCCCCHHHHHHHHHHHC------CCcEEcccccc
Confidence 45557778999999998887644 34789999643
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.82 E-value=0.021 Score=45.83 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=30.5
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADV 71 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~D~ 71 (168)
..+. +.+.+|+||||++..+|..+.. . +.+++.+++..
T Consensus 131 ~~ll-l~Gp~G~GKTtLa~aia~~l~~-~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 131 NPLF-IYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITSEK 170 (440)
T ss_dssp CCEE-EECSSSSSHHHHHHHHHHHHHH-HCCSSCEEEEEHHH
T ss_pred CeEE-EECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeHHH
Confidence 3444 4678899999999999999877 5 88899888653
No 177
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.80 E-value=0.026 Score=40.11 Aligned_cols=38 Identities=42% Similarity=0.481 Sum_probs=29.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+.+|+++ +..|+||||++..|+..+.. ++.+++.|...
T Consensus 6 ~~~i~i~-G~~GsGKSTl~~~l~~~~~~----~i~~v~~d~~~ 43 (211)
T 3asz_A 6 PFVIGIA-GGTASGKTTLAQALARTLGE----RVALLPMDHYY 43 (211)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHHGG----GEEEEEGGGCB
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHHHhCC----CeEEEecCccc
Confidence 6677875 56799999999988886642 58889988744
No 178
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.77 E-value=0.02 Score=43.42 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=24.7
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
..+..+.+|+|||++|..+|..+ |.+++.+++
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l----~~~~i~v~~ 69 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM----GINPIMMSA 69 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH----TCCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCCEEEEeH
Confidence 44445888999999999998876 567777764
No 179
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.75 E-value=0.019 Score=44.29 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=30.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhC---CCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC---QLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~---g~rVlliD~D 70 (168)
.+.+. +.+.+|+||||++..++..+.. . +..++.+++.
T Consensus 45 ~~~vl-i~G~~G~GKTtl~~~l~~~~~~-~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 45 PNNIF-IYGLTGTGKTAVVKFVLSKLHK-KFLGKFKHVYINTR 85 (386)
T ss_dssp CCCEE-EEECTTSSHHHHHHHHHHHHHH-HTCSSCEEEEEEHH
T ss_pred CCeEE-EECCCCCCHHHHHHHHHHHHHH-HhcCCceEEEEECC
Confidence 44444 4678899999999999998877 4 7889988864
No 180
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.75 E-value=0.022 Score=40.13 Aligned_cols=36 Identities=33% Similarity=0.360 Sum_probs=24.1
Q ss_pred CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
++++.+|++ .+..|+||||++..||. .| ..++|+|.
T Consensus 5 ~~~~~~I~i-~G~~GsGKST~~~~La~-----~g--~~~id~d~ 40 (203)
T 1uf9_A 5 AKHPIIIGI-TGNIGSGKSTVAALLRS-----WG--YPVLDLDA 40 (203)
T ss_dssp -CCCEEEEE-EECTTSCHHHHHHHHHH-----TT--CCEEEHHH
T ss_pred ccCceEEEE-ECCCCCCHHHHHHHHHH-----CC--CEEEcccH
Confidence 344666666 56789999999877765 34 34567764
No 181
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.70 E-value=0.033 Score=45.03 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=32.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
++.+.++.+-.|+||||++..|+..+.. .+.++..++.|
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d 76 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVG 76 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecc
Confidence 4556667889999999999999999987 77777776644
No 182
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.69 E-value=0.036 Score=43.32 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=30.7
Q ss_pred EEEEe--cCCCCCChhhHHHHHHHHHHHhC------CCeEEEEeCCC
Q 030973 33 VIAVA--SGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADV 71 (168)
Q Consensus 33 vI~v~--s~kgG~GKTt~a~~LA~~la~~~------g~rVlliD~D~ 71 (168)
...++ .+.+|+||||++..++..+.. . +..++.+++..
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSE-AAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHH-HHHHTTCCEEEEEEEGGG
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHH-HHhccCCceeEEEEECCC
Confidence 35555 889999999999999998876 3 67888998754
No 183
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.65 E-value=0.038 Score=40.04 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=28.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCC-eEEEEe
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQL-KVGLLD 68 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~-rVlliD 68 (168)
++.|.| -+-.|+||||.+..|+..|.. .|. .|.+.-
T Consensus 3 g~~i~~-eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~r 39 (213)
T 4tmk_A 3 SKYIVI-EGLEGAGKTTARNVVVETLEQ-LGIRDMVFTR 39 (213)
T ss_dssp CCEEEE-EECTTSCHHHHHHHHHHHHHH-TTCCCEEEEE
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCCcceeee
Confidence 344544 678899999999999999999 897 665543
No 184
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.61 E-value=0.013 Score=45.46 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=28.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
.+++ ++.+.+|+|||++|.++|.. . |.+|++|++
T Consensus 123 gsvi-LI~GpPGsGKTtLAlqlA~~--~--G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMV-IVTGKGNSGKTPLVHALGEA--L--GGKDKYATV 156 (331)
T ss_dssp SEEE-EEECSCSSSHHHHHHHHHHH--H--HTTSCCEEE
T ss_pred CcEE-EEEcCCCCCHHHHHHHHHHh--C--CCCEEEEEe
Confidence 3444 56899999999999999986 3 678999999
No 185
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.61 E-value=0.033 Score=41.99 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=28.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCC----eEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQL----KVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~----rVlliD~D 70 (168)
...+.+ .+.+|+|||++|..+|..+.. .+. +++.+++.
T Consensus 67 ~~~vll-~G~~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 67 TLHMSF-TGNPGTGKTTVALKMAGLLHR-LGYVRKGHLVSVTRD 108 (309)
T ss_dssp CCEEEE-EECTTSSHHHHHHHHHHHHHH-TTSSSSCCEEEECGG
T ss_pred CceEEE-ECCCCCCHHHHHHHHHHHHHh-cCCcCCCcEEEEcHH
Confidence 344555 567899999999999999987 654 67777653
No 186
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.61 E-value=0.021 Score=42.26 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=29.8
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
++.+..|+|||++|..++..+.+ .+.+++.|++...
T Consensus 33 ll~G~~GtGKt~la~~i~~~~~~-~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 33 LIIGERGTGKELIASRLHYLSSR-WQGPFISLNCAAL 68 (265)
T ss_dssp EEECCTTSCHHHHHHHHHHTSTT-TTSCEEEEEGGGS
T ss_pred EEECCCCCcHHHHHHHHHHhcCc-cCCCeEEEecCCC
Confidence 34678899999999999988877 7788999987653
No 187
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.61 E-value=0.027 Score=43.87 Aligned_cols=41 Identities=27% Similarity=0.258 Sum_probs=31.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHH--hC---CCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALAS--KC---QLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~--~~---g~rVlliD~D~~ 72 (168)
+.++.+ .+..|+||||++..++..++. .. |.+|++||....
T Consensus 131 G~i~~I-~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 131 QAITEV-FGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp SEEEEE-EESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 566666 567899999999999987743 01 468999998753
No 188
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.60 E-value=0.019 Score=39.38 Aligned_cols=34 Identities=32% Similarity=0.502 Sum_probs=24.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+++|.+ .+..|+||||++..||..+. . -++|.|.
T Consensus 2 ~~~I~l-~G~~GsGKsT~a~~La~~lg----~--~~id~d~ 35 (173)
T 1e6c_A 2 TEPIFM-VGARGCGMTTVGRELARALG----Y--EFVDTDI 35 (173)
T ss_dssp CCCEEE-ESCTTSSHHHHHHHHHHHHT----C--EEEEHHH
T ss_pred CceEEE-ECCCCCCHHHHHHHHHHHhC----C--cEEcccH
Confidence 344555 56889999999999988763 3 3566663
No 189
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.57 E-value=0.024 Score=40.01 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=26.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
++.|++ .+..|+||||++..|+..+ .|.+++.++..
T Consensus 4 ~~~I~l-~G~~GsGKsT~~~~L~~~l---~g~~~~~~~~~ 39 (204)
T 2v54_A 4 GALIVF-EGLDKSGKTTQCMNIMESI---PANTIKYLNFP 39 (204)
T ss_dssp CCEEEE-ECCTTSSHHHHHHHHHHTS---CGGGEEEEESS
T ss_pred CcEEEE-EcCCCCCHHHHHHHHHHHH---CCCceEEEecC
Confidence 445555 6788999999999988766 36777777643
No 190
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.57 E-value=0.027 Score=44.81 Aligned_cols=41 Identities=22% Similarity=0.150 Sum_probs=30.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHh-----CCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~-----~g~rVlliD~D~~ 72 (168)
+.++.+ .+.+|+||||++.+++.....- .+.+|++||....
T Consensus 178 Gei~~I-~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 178 GSITEL-FGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp TSEEEE-EESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred CcEEEE-EcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence 445555 6788999999999988665430 2578999999753
No 191
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.56 E-value=0.041 Score=40.06 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
++++|.++ +.+|+||+|.|..||..+
T Consensus 28 k~kiI~ll-GpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVL-GGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEE-CCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHH
Confidence 36666664 788999999999998766
No 192
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.56 E-value=0.014 Score=41.22 Aligned_cols=35 Identities=31% Similarity=0.360 Sum_probs=25.8
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCe--EEEEeCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLK--VGLLDAD 70 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~r--VlliD~D 70 (168)
.++.+.+|+|||+++..++..+.. .+.+ ++.+++.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~~~ 77 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNAS 77 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG-GGGGGGEEEEETT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhc-cccccceEEeccc
Confidence 455788899999999999998876 5544 4445543
No 193
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=94.55 E-value=0.14 Score=40.05 Aligned_cols=39 Identities=33% Similarity=0.298 Sum_probs=35.3
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
..++|.+++..-.+|||+++..|...+.+ .|.+|-.+-.
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~-~G~~v~~v~t 206 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALE-KGIKAGFLAT 206 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHH-TTCCEEEEEC
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHh-cCCeEEEEcc
Confidence 47899999999999999999999999999 9999988554
No 194
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.52 E-value=0.027 Score=40.39 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=29.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHh-----CCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~-----~g~rVlliD~D~ 71 (168)
+.++++ .+..|+||||++..++..+... .+.+++.++.+.
T Consensus 25 G~~~~l-~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 25 QAITEV-FGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEEEEE-EESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 566666 5678999999999998765430 256789998865
No 195
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.50 E-value=0.022 Score=39.84 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=19.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+++|++ .+..|+||||++..||..+
T Consensus 9 ~~~I~l-~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFV-VGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEE-EECTTSSHHHHHHHHHHHH
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHHh
Confidence 455555 5788999999999998766
No 196
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.48 E-value=0.025 Score=39.19 Aligned_cols=25 Identities=36% Similarity=0.379 Sum_probs=19.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
++.|. +.+..|+||||++..||..+
T Consensus 11 ~~~i~-i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNIL-LTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEE-EECSTTSSHHHHHHHHHHHH
T ss_pred CCeEE-EEeCCCCCHHHHHHHHHHHh
Confidence 34454 57889999999999988766
No 197
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.45 E-value=0.027 Score=40.44 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=19.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+..|.+ .+..|+||||++..||..+
T Consensus 4 ~~~I~l-~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVL-IGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEE-ECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHc
Confidence 344444 6788999999999998866
No 198
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.43 E-value=0.032 Score=39.21 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=18.4
Q ss_pred EecCCCCCChhhHHHHHHHHHH
Q 030973 36 VASGKGGVGKSTTAVNLAVALA 57 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la 57 (168)
++.+..|+||||++..|+..+.
T Consensus 4 ~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 4 AIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEECCTTSCHHHHHHHHHHHHC
T ss_pred EEECCCccCHHHHHHHHHHhcC
Confidence 4467889999999999998773
No 199
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.36 E-value=0.027 Score=39.46 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=19.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+++|++ .+..|+||||++..|+..+
T Consensus 12 ~~~I~l-~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFI-IGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEE-EECTTSSHHHHHHHHHHHH
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHHh
Confidence 344555 6788999999999998876
No 200
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.33 E-value=0.035 Score=37.88 Aligned_cols=22 Identities=32% Similarity=0.170 Sum_probs=18.2
Q ss_pred EEecCCCCCChhhHHHHHHHHH
Q 030973 35 AVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~l 56 (168)
.++.+..|+||||++..|+..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3446889999999999998866
No 201
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.33 E-value=0.02 Score=39.63 Aligned_cols=25 Identities=40% Similarity=0.453 Sum_probs=15.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+++| ++.+..|+||||++..|+..+
T Consensus 5 ~~~I-~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPII-WINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEE-EEECCC----CHHHHHHHHHS
T ss_pred CeEE-EEECCCCCCHHHHHHHHHHhc
Confidence 4444 457889999999998887654
No 202
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.31 E-value=0.043 Score=40.32 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=19.3
Q ss_pred EEEEecCCCCCChhhHHHHHHHHH
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
.+.++.+..|+||||+|..|+..+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 344557889999999999998765
No 203
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.31 E-value=0.028 Score=38.84 Aligned_cols=34 Identities=41% Similarity=0.377 Sum_probs=24.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
++.|.+ .+..|+||||++..||..+.. .++|.|.
T Consensus 4 m~~i~i-~G~~GsGKsTla~~La~~l~~------~~~d~d~ 37 (175)
T 1via_A 4 AKNIVF-IGFMGSGKSTLARALAKDLDL------VFLDSDF 37 (175)
T ss_dssp -CCEEE-ECCTTSCHHHHHHHHHHHHTC------EEEEHHH
T ss_pred CCEEEE-EcCCCCCHHHHHHHHHHHcCC------CEEcccH
Confidence 344555 688999999999999876632 4567664
No 204
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.30 E-value=0.064 Score=38.52 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=25.7
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
++=+--|+||||.+..|+..|. .|.+|+..-
T Consensus 6 ~~EG~dGsGKsTq~~~L~~~L~--~~~~v~~~~ 36 (205)
T 4hlc_A 6 TFEGPEGSGKTTVINEVYHRLV--KDYDVIMTR 36 (205)
T ss_dssp EEECCTTSCHHHHHHHHHHHHT--TTSCEEEEE
T ss_pred EEECCCCCcHHHHHHHHHHHHH--CCCCEEEee
Confidence 3467789999999999999995 588888764
No 205
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.24 E-value=0.021 Score=39.24 Aligned_cols=33 Identities=36% Similarity=0.453 Sum_probs=23.1
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
++|++ .+..|+||||++..||..+ |. ..+|.|.
T Consensus 5 ~~i~l-~G~~GsGKSTl~~~La~~l----~~--~~id~d~ 37 (173)
T 1kag_A 5 RNIFL-VGPMGAGKSTIGRQLAQQL----NM--EFYDSDQ 37 (173)
T ss_dssp CCEEE-ECCTTSCHHHHHHHHHHHT----TC--EEEEHHH
T ss_pred CeEEE-ECCCCCCHHHHHHHHHHHh----CC--CEEeccH
Confidence 34555 6788999999998887754 32 4567663
No 206
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.22 E-value=0.053 Score=44.45 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=32.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.++++ .+..|+||||++..++..+.. .|.+++++....
T Consensus 281 G~i~~i-~G~~GsGKSTLl~~l~g~~~~-~G~~vi~~~~ee 319 (525)
T 1tf7_A 281 DSIILA-TGATGTGKTLLVSRFVENACA-NKERAILFAYEE 319 (525)
T ss_dssp SCEEEE-EECTTSSHHHHHHHHHHHHHT-TTCCEEEEESSS
T ss_pred CcEEEE-EeCCCCCHHHHHHHHHHHHHh-CCCCEEEEEEeC
Confidence 455555 678899999999999999988 899998888764
No 207
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.18 E-value=0.037 Score=42.59 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=25.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
++.+.++++..|+||||++..||..+ + .-+|.+|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~----~--~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL----P--VELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS----C--EEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC----C--CcEEeccc
Confidence 34455668889999999999988754 2 45777775
No 208
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.14 E-value=0.032 Score=40.81 Aligned_cols=42 Identities=24% Similarity=0.194 Sum_probs=31.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
++. .++.+-.|+||||++..|+..|....|.+|+++--.|..
T Consensus 21 ~~~-i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 21 SMF-ITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG 62 (223)
T ss_dssp CEE-EEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred CeE-EEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence 444 445788999999999999999964257888874455543
No 209
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.11 E-value=0.076 Score=38.72 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=26.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
+..| ++.+-.|+||||++..|+..+.. |.+|+...
T Consensus 26 g~~i-~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~~~ 60 (229)
T 4eaq_A 26 SAFI-TFEGPEGSGKTTVINEVYHRLVK--DYDVIMTR 60 (229)
T ss_dssp CEEE-EEECCTTSCHHHHHHHHHHHHTT--TSCEEEEC
T ss_pred CeEE-EEEcCCCCCHHHHHHHHHHHHhc--CCCceeec
Confidence 4555 44688899999999999998864 66776543
No 210
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.03 E-value=0.042 Score=39.20 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=17.7
Q ss_pred EecCCCCCChhhHHHHHHHHH
Q 030973 36 VASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~l 56 (168)
++.+..|+||||+|..|+..+
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 4 VLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 347889999999999998765
No 211
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.97 E-value=0.051 Score=39.46 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=20.3
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
.+..|.+ .+..|+||||++..||..+
T Consensus 15 ~~~~I~l-~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVL-LGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEE-ECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEE-ECCCCCCHHHHHHHHHHHh
Confidence 3445555 6778999999999999876
No 212
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.95 E-value=0.11 Score=38.75 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=29.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
+.++++ .+..|+||||+...++..+......+|++.+-+
T Consensus 25 g~~v~i-~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 25 MGLILV-TGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp SEEEEE-ECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCEEEE-ECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 566666 566799999999999998876225677776644
No 213
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.89 E-value=0.065 Score=44.81 Aligned_cols=35 Identities=37% Similarity=0.454 Sum_probs=27.5
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHh---CCCeEEEE
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASK---CQLKVGLL 67 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~---~g~rVlli 67 (168)
.+.++.+.+|+||||++..+...+.+. .+.+|+++
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~ 202 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 456668889999999999999888741 45678775
No 214
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.85 E-value=0.043 Score=41.31 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=24.4
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.+.+|++ .+..|+||||++..|+ . .|.. +||+|.
T Consensus 73 ~~~~iI~I-~G~~GSGKSTva~~La-~----lg~~--~id~D~ 107 (281)
T 2f6r_A 73 SGLYVLGL-TGISGSGKSSVAQRLK-N----LGAY--IIDSDH 107 (281)
T ss_dssp TTCEEEEE-EECTTSCHHHHHHHHH-H----HTCE--EEEHHH
T ss_pred CCCEEEEE-ECCCCCCHHHHHHHHH-H----CCCc--EEehhH
Confidence 34556665 6788999999999888 2 3544 467654
No 215
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.84 E-value=0.041 Score=42.46 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=24.4
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.++++..|+||||++..||..+ ..-+|++|.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~------~~~iis~Ds 36 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL------NGEVISGDS 36 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT------TEEEEECCG
T ss_pred EEEEECCCcCCHHHHHHHHHHhC------ccceeecCc
Confidence 45567888999999998887654 246788875
No 216
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.84 E-value=0.042 Score=38.31 Aligned_cols=36 Identities=31% Similarity=0.313 Sum_probs=25.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.+|++ .+..|+||||++..|+.. .+...+.+|.|.
T Consensus 9 g~~i~l-~G~~GsGKSTl~~~La~~----~~~g~i~i~~d~ 44 (191)
T 1zp6_A 9 GNILLL-SGHPGSGKSTIAEALANL----PGVPKVHFHSDD 44 (191)
T ss_dssp TEEEEE-EECTTSCHHHHHHHHHTC----SSSCEEEECTTH
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHhc----cCCCeEEEcccc
Confidence 555555 678899999998888764 244466777763
No 217
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=93.78 E-value=0.11 Score=41.27 Aligned_cols=37 Identities=32% Similarity=0.361 Sum_probs=31.0
Q ss_pred cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (168)
Q Consensus 27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli 67 (168)
+....++|+|++. -||||++.-++..|.. .|++|.++
T Consensus 45 p~~~~~vI~VTGT---nGKtTT~~~l~~iL~~-~G~~~g~~ 81 (422)
T 1w78_A 45 LKPAPFVFTVAGT---NGKGTTCRTLESILMA-AGYKVGVY 81 (422)
T ss_dssp SSCSSEEEEEECS---SCHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred cccCCcEEEEeCC---cChHHHHHHHHHHHHH-CCCCEEEE
Confidence 3445789999765 5899999999999999 99999765
No 218
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.78 E-value=0.031 Score=46.31 Aligned_cols=40 Identities=38% Similarity=0.376 Sum_probs=31.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.+|++ .+..|+||||++..||..+....|.++.++|.|.
T Consensus 369 G~iI~L-iG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 369 GFTVFF-TGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp CEEEEE-EESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred ceEEEE-ECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 556666 5678999999999999999872345788899875
No 219
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.73 E-value=0.048 Score=41.00 Aligned_cols=34 Identities=26% Similarity=0.185 Sum_probs=24.2
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
+.+.++.+.+|+||||++..|+..+ .| ...||.|
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~---~~--~~~i~~D 35 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN---PG--FYNINRD 35 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS---TT--EEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC---CC--cEEeccc
Confidence 3456668899999999998888732 23 4556665
No 220
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.70 E-value=0.052 Score=38.76 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=19.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+++|++ .+..|+||||++..|+..+
T Consensus 8 g~~i~l-~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVL-SGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEE-ECCTTSCHHHHHHHHHHST
T ss_pred CcEEEE-ECcCCCCHHHHHHHHHhhC
Confidence 556655 7888999999999887654
No 221
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=93.68 E-value=0.078 Score=39.60 Aligned_cols=42 Identities=33% Similarity=0.499 Sum_probs=38.9
Q ss_pred CeEEEEecCC-CCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGK-GGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~k-gG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+|-|.|+++- +|.||-.+|+.++..|.. +|.||-++-.||.-
T Consensus 23 mKyIfVTGGVvSglGKGi~aaSlG~LLk~-rG~~Vt~~KiDPYl 65 (294)
T 2c5m_A 23 MKYILVTGGVISGIGKGIIASSVGTILKS-CGLHVTSIKIDPYI 65 (294)
T ss_dssp CEEEEEEECSSTTSCHHHHHHHHHHHHHT-TTCCEECCEEECBC
T ss_pred eEEEEEcCccccccchHHHHHHHHHHHHH-CCCeeEEEecCCce
Confidence 8999999887 999999999999999999 99999999999844
No 222
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.65 E-value=0.1 Score=40.96 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=29.7
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDA 69 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~ 69 (168)
.+.++++ .+..|+||||+...|+..+.. . ..+|+.++-
T Consensus 135 ~g~~i~i-vG~~GsGKTTll~~l~~~~~~-~~~g~I~~~e~ 173 (372)
T 2ewv_A 135 KMGLILV-TGPTGSGKSTTIASMIDYINQ-TKSYHIITIED 173 (372)
T ss_dssp SSEEEEE-ECSSSSSHHHHHHHHHHHHHH-HSCCEEEEEES
T ss_pred CCCEEEE-ECCCCCCHHHHHHHHHhhcCc-CCCcEEEEecc
Confidence 3566666 567799999999999998887 4 568878774
No 223
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.64 E-value=0.034 Score=39.94 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=19.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+..|.+ .+..|+||||++..||..+
T Consensus 5 ~~~I~l-~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLIL-IGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEE-EECTTSSHHHHHHHHHHHH
T ss_pred ceEEEE-ECCCCCCHHHHHHHHHHHh
Confidence 344555 5788999999999998876
No 224
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.63 E-value=0.05 Score=38.51 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=26.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+++|++ .+..|+||||++..|+..+ | ...+|.|..
T Consensus 29 g~~i~l-~G~~GsGKSTl~~~L~~~~----g--~~~i~~d~~ 63 (200)
T 4eun_A 29 TRHVVV-MGVSGSGKTTIAHGVADET----G--LEFAEADAF 63 (200)
T ss_dssp CCEEEE-ECCTTSCHHHHHHHHHHHH----C--CEEEEGGGG
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHhh----C--CeEEccccc
Confidence 455655 5788999999999998766 3 356777753
No 225
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.60 E-value=0.045 Score=38.58 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=18.8
Q ss_pred EEEEecCCCCCChhhHHHHHHHHH
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+|++ .+..|+||||++..||..+
T Consensus 4 ~i~i-~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTI-DGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEE-ECSTTSSHHHHHHHHHHHH
T ss_pred EEEE-ECCCCCCHHHHHHHHHHhc
Confidence 4555 6788999999999998765
No 226
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.57 E-value=0.056 Score=37.76 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=23.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
++.|.+ .+..|+||||++..||..+ .| ..+||+|
T Consensus 10 ~~~I~l-~G~~GsGKSTv~~~La~~l---~g--~~~id~d 43 (184)
T 1y63_A 10 GINILI-TGTPGTGKTSMAEMIAAEL---DG--FQHLEVG 43 (184)
T ss_dssp SCEEEE-ECSTTSSHHHHHHHHHHHS---TT--EEEEEHH
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHhc---CC--CEEeeHH
Confidence 445555 6788999999998887752 14 3456665
No 227
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.48 E-value=0.086 Score=44.19 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=28.6
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
+.++.+.+|+|||++.+.+...+.+..+.+||++-.
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~ 232 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 232 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 556678899999999999998887635778887643
No 228
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.43 E-value=0.38 Score=38.31 Aligned_cols=32 Identities=31% Similarity=0.569 Sum_probs=24.8
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.++++..|+||||++..||..+.. -+|.+|.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~------~iis~Ds 35 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNG------EVINSDS 35 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTE------EEEECCT
T ss_pred EEEEECcchhhHHHHHHHHHHHCCC------eEeecCc
Confidence 4455778899999999999987732 4688885
No 229
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.41 E-value=0.058 Score=44.41 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=19.5
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHH
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAV 54 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~ 54 (168)
..++|++ .+-||+||||+|..++.
T Consensus 151 ~~~vv~I-~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFL-HGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEE-ECSTTSSHHHHHHHHHH
T ss_pred CceEEEE-EcCCCCCHHHHHHHHHH
Confidence 3567766 57899999999998885
No 230
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.38 E-value=0.048 Score=38.53 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=16.9
Q ss_pred eEEEEecCCCCCChhhHHHHHHH
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAV 54 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~ 54 (168)
++|++ .+..|+||||++..|+.
T Consensus 2 ~~i~i-~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGL-TGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEE-EECTTSSHHHHHHHHHH
T ss_pred eEEEE-ECCCCcCHHHHHHHHHH
Confidence 45666 56789999999887776
No 231
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.32 E-value=0.069 Score=37.24 Aligned_cols=21 Identities=48% Similarity=0.691 Sum_probs=17.2
Q ss_pred EEEecCCCCCChhhHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAV 54 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~ 54 (168)
+.++.+..|+||||++..|+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 445568899999999999975
No 232
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.31 E-value=0.038 Score=39.28 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=19.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+++|++ .+..|+||||++..|+..+
T Consensus 12 ~~~i~l-~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVV-CGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEE-ECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHhC
Confidence 344444 6788999999999998766
No 233
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.30 E-value=0.049 Score=38.86 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=16.9
Q ss_pred EecCCCCCChhhHHHHHHHHH
Q 030973 36 VASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~l 56 (168)
++.+..|+||||+|..|+..+
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 4 VLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEECSTTSSHHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 346889999999999887643
No 234
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.30 E-value=0.067 Score=38.62 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=18.7
Q ss_pred EEecCCCCCChhhHHHHHHHHH
Q 030973 35 AVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~l 56 (168)
.++.+..|+||||++..|+..+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4557889999999999998866
No 235
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.30 E-value=0.046 Score=38.65 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=24.6
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
++.+..|+|||++|..||.. |.+|++|++..
T Consensus 3 lV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~ 33 (180)
T 1c9k_A 3 LVTGGARSGKSRHAEALIGD-----APQVLYIATSQ 33 (180)
T ss_dssp EEEECTTSSHHHHHHHHHCS-----CSSEEEEECCC
T ss_pred EEECCCCCcHHHHHHHHHhc-----CCCeEEEecCC
Confidence 45678899999998887643 67899999965
No 236
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.26 E-value=0.039 Score=39.70 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=19.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+..|.+ .+..|+||||++..||..+
T Consensus 5 ~~~I~l-~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMI-SGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEE-EESTTSSHHHHHHHHHHHH
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHh
Confidence 444554 6678999999999999876
No 237
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=93.26 E-value=0.12 Score=41.24 Aligned_cols=36 Identities=31% Similarity=0.345 Sum_probs=30.7
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
...++|+|++. -||||++.-++..|.. .|++|.++-
T Consensus 37 ~~~~vI~VtGT---nGKtTT~~~l~~iL~~-~G~~vg~~~ 72 (428)
T 1jbw_A 37 QQGRYIHVTGT---NGKGSAANAIAHVLEA-SGLTVGLYT 72 (428)
T ss_dssp GSSCEEEEECS---SCHHHHHHHHHHHHHH-TTCCEEEEC
T ss_pred hcCcEEEEECC---CChHHHHHHHHHHHHH-CCCCEEEEe
Confidence 34689999765 5899999999999999 999998764
No 238
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.19 E-value=0.043 Score=39.64 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=19.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+..|++ .+..|+||||++..||..+
T Consensus 7 ~~~I~l-~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVI-MGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEE-EECTTSSHHHHHHHHHHHS
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHc
Confidence 445555 6788999999999888644
No 239
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.10 E-value=0.15 Score=36.48 Aligned_cols=38 Identities=24% Similarity=0.137 Sum_probs=30.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
++ |.|+.+.-|+||||.....+..+.. +|+||+++-..
T Consensus 20 g~-l~fiyG~MgsGKTt~Ll~~i~n~~~-~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQ-IQVILGPMFSGKSTELMRRVRRFQI-AQYKCLVIKYA 57 (195)
T ss_dssp CE-EEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEET
T ss_pred eE-EEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEccc
Confidence 45 6666777789999888888888888 89999999743
No 240
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.00 E-value=0.12 Score=38.69 Aligned_cols=36 Identities=28% Similarity=0.246 Sum_probs=27.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+.+.+ .+..|+|||++|..+|..+ +.+++.+++..
T Consensus 50 ~~~vll-~G~~GtGKT~la~~la~~l----~~~~~~i~~~~ 85 (310)
T 1ofh_A 50 PKNILM-IGPTGVGKTEIARRLAKLA----NAPFIKVEATK 85 (310)
T ss_dssp CCCEEE-ECCTTSSHHHHHHHHHHHH----TCCEEEEEGGG
T ss_pred CceEEE-ECCCCCCHHHHHHHHHHHh----CCCEEEEcchh
Confidence 334544 5788999999999998876 55788888754
No 241
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=92.91 E-value=0.15 Score=38.13 Aligned_cols=41 Identities=5% Similarity=-0.054 Sum_probs=33.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..++.+ ++.+|.||||++.+++..-++ +|.+++++-++...
T Consensus 21 gs~~li-~g~p~~~~~~l~~qfl~~g~~-~Ge~~~~~~~~e~~ 61 (260)
T 3bs4_A 21 SLILIH-EEDASSRGKDILFYILSRKLK-SDNLVGMFSISYPL 61 (260)
T ss_dssp CEEEEE-ECSGGGCHHHHHHHHHHHHHH-TTCEEEEEECSSCH
T ss_pred CcEEEE-EeCCCccHHHHHHHHHHHHHH-CCCcEEEEEEeCCH
Confidence 455555 666677777999999999999 99999999998644
No 242
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.88 E-value=0.072 Score=39.18 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=19.0
Q ss_pred EEEEecCCCCCChhhHHHHHHHHH
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
.+..+.+..|+||||++..||..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 344457888999999999998765
No 243
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.86 E-value=0.15 Score=37.26 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=25.7
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+-|. +.+.+|+|||++|..+|..+ +.+++.+++..
T Consensus 40 ~~vl-l~G~~GtGKT~la~~la~~~----~~~~~~~~~~~ 74 (262)
T 2qz4_A 40 KGAL-LLGPPGCGKTLLAKAVATEA----QVPFLAMAGAE 74 (262)
T ss_dssp CEEE-EESCTTSSHHHHHHHHHHHH----TCCEEEEETTT
T ss_pred ceEE-EECCCCCCHHHHHHHHHHHh----CCCEEEechHH
Confidence 3444 46788999999999998754 45677777654
No 244
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.82 E-value=0.12 Score=44.64 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=28.7
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
+.++.+.+|+|||++...++..+.+..+.+|+++-
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a 407 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 407 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEc
Confidence 56778899999999999999888763577888764
No 245
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.81 E-value=0.092 Score=37.27 Aligned_cols=25 Identities=40% Similarity=0.441 Sum_probs=20.7
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
..++.+.+|+||||++..++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4455788899999999999988865
No 246
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.81 E-value=0.079 Score=37.46 Aligned_cols=32 Identities=34% Similarity=0.455 Sum_probs=22.2
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+|++ .+..|+||||++..||. .|.. ++|+|.
T Consensus 3 ~~i~l-~G~~GsGKST~~~~La~-----lg~~--~id~d~ 34 (206)
T 1jjv_A 3 YIVGL-TGGIGSGKTTIANLFTD-----LGVP--LVDADV 34 (206)
T ss_dssp EEEEE-ECSTTSCHHHHHHHHHT-----TTCC--EEEHHH
T ss_pred cEEEE-ECCCCCCHHHHHHHHHH-----CCCc--ccchHH
Confidence 45555 57889999999877764 4544 457664
No 247
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.74 E-value=0.084 Score=38.94 Aligned_cols=26 Identities=42% Similarity=0.597 Sum_probs=20.2
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
.+.+|++ .+..|+||||++..||..|
T Consensus 26 ~g~~I~I-~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITV-DGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEE-ECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEE-ECCCCCCHHHHHHHHHHhc
Confidence 3567777 4678999999999998543
No 248
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.73 E-value=0.089 Score=37.67 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=19.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
++.|+ +++..|+||||++..|+..+
T Consensus 19 g~~iv-l~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLV-LIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEE-EECCTTSSHHHHHHHHHHHC
T ss_pred CCEEE-EECcCCCCHHHHHHHHHhhC
Confidence 45555 47889999999999888654
No 249
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.70 E-value=0.074 Score=37.99 Aligned_cols=21 Identities=24% Similarity=0.185 Sum_probs=17.6
Q ss_pred EecCCCCCChhhHHHHHHHHH
Q 030973 36 VASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~l 56 (168)
++.+..|+||||++..|+..+
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 4 ILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 446788999999999998865
No 250
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.68 E-value=0.09 Score=36.96 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=19.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+.+|++ .+..|+||||++..|+..+
T Consensus 7 g~ii~l-~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFII-SAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEE-ECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEE-ECcCCCCHHHHHHHHHhhC
Confidence 456666 5778999999998887653
No 251
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=92.67 E-value=0.13 Score=40.80 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=27.6
Q ss_pred cCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 38 SGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 38 s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
-+..|+|||++...+...+.. .|.+|+++|-.
T Consensus 59 ~G~tGsGKs~~~~~li~~~~~-~g~~viv~Dpk 90 (437)
T 1e9r_A 59 NGATGTGKSVLLRELAYTGLL-RGDRMVIVDPN 90 (437)
T ss_dssp EECTTSSHHHHHHHHHHHHHH-TTCEEEEEEET
T ss_pred ECCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 356789999998888888888 89999999864
No 252
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=92.65 E-value=0.14 Score=43.63 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=20.1
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHH
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVA 55 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~ 55 (168)
..+.|++++ .+|+||||++-+|...
T Consensus 9 ~~~~I~IiG-~~~~GKTTL~~~Ll~~ 33 (704)
T 2rdo_7 9 RYRNIGISA-HIDAGKTTTTERILFY 33 (704)
T ss_pred cccEEEEEC-CCCCCHHHHHHHHHHh
Confidence 366777765 9999999999999654
No 253
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.64 E-value=0.096 Score=37.47 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=19.2
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHH
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
.+|++ .+..|+||||++..|+..+
T Consensus 6 ~~i~i-~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITI-DGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEE-ECCTTSSHHHHHHHHHHHH
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHHh
Confidence 45666 5678999999999998765
No 254
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.61 E-value=0.088 Score=36.61 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=19.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
++++++ .+..|+||||++..|+..+
T Consensus 5 g~~i~i-~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVL-LGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEE-ECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHhhC
Confidence 445555 6788999999999988765
No 255
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=92.41 E-value=0.15 Score=40.85 Aligned_cols=35 Identities=23% Similarity=0.199 Sum_probs=30.2
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
..++|+|++. -||||++.-++..|.. .|++|.++-
T Consensus 51 ~~~vI~VTGT---nGKtTT~~~l~~iL~~-~G~~vg~~~ 85 (442)
T 1o5z_A 51 EYKTIHIGGT---NGKGSVANMVSNILVS-QGYRVGSYY 85 (442)
T ss_dssp SSEEEEEECS---SSHHHHHHHHHHHHHH-HTCCEEEEC
T ss_pred cCCEEEEECC---cCHHHHHHHHHHHHHH-CCCCEEEEC
Confidence 4689999765 5899999999999999 999998763
No 256
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.41 E-value=0.11 Score=39.94 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=29.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhC------CCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~------g~rVlliD~D~ 71 (168)
++.+ ++++.+|+|||+++..++..+.+.. +.+++.|++-.
T Consensus 45 ~~~l-li~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~ 90 (318)
T 3te6_A 45 NKLF-YITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE 90 (318)
T ss_dssp CCEE-EEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC
T ss_pred CCeE-EEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 4445 5588999999999999999997621 34677777644
No 257
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.39 E-value=0.11 Score=38.03 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=19.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+.+|++ .+..|+||||++..|+..+
T Consensus 27 ~~~i~l-~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVI-LGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEE-ECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHh
Confidence 455665 5788999999999999655
No 258
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.31 E-value=0.12 Score=39.20 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=27.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+.+.++++..|+|||+++..+|..+ +.+++.+++..
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l----~~~~~~i~~~~ 83 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDV----NADMMFVNGSD 83 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHT----TEEEEEEETTT
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHh----CCCEEEEcccc
Confidence 33456778889999999999887654 56787777643
No 259
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.25 E-value=0.14 Score=41.90 Aligned_cols=35 Identities=26% Similarity=0.250 Sum_probs=27.2
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.+ ++.+..|+||||+|..+|..+ |..++.+++..
T Consensus 78 ~~l-LL~GppGtGKTtla~~la~~l----~~~~i~in~s~ 112 (516)
T 1sxj_A 78 RAA-MLYGPPGIGKTTAAHLVAQEL----GYDILEQNASD 112 (516)
T ss_dssp SEE-EEECSTTSSHHHHHHHHHHHT----TCEEEEECTTS
T ss_pred cEE-EEECCCCCCHHHHHHHHHHHc----CCCEEEEeCCC
Confidence 444 457788999999999888755 77888888754
No 260
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.16 E-value=0.062 Score=40.87 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=29.0
Q ss_pred ecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.+..|+|||++|..++....+ .+.+.+.|++..
T Consensus 30 i~Ge~GtGKt~lAr~i~~~~~~-~~~~~v~v~~~~ 63 (304)
T 1ojl_A 30 IHGDSGTGKELVARALHACSAR-SDRPLVTLNCAA 63 (304)
T ss_dssp EESCTTSCHHHHHHHHHHHSSC-SSSCCCEEECSS
T ss_pred EECCCCchHHHHHHHHHHhCcc-cCCCeEEEeCCC
Confidence 4678899999999999988777 788899998865
No 261
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.15 E-value=0.2 Score=42.79 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=31.8
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.+.+ .+..|+|||++|..+|..+.. .+.+++.||+...
T Consensus 523 ~~Ll-~Gp~GtGKT~lA~ala~~l~~-~~~~~i~i~~s~~ 560 (758)
T 3pxi_A 523 SFIF-LGPTGVGKTELARALAESIFG-DEESMIRIDMSEY 560 (758)
T ss_dssp EEEE-ESCTTSSHHHHHHHHHHHHHS-CTTCEEEEEGGGG
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHhcC-CCcceEEEechhc
Confidence 4544 577899999999999999987 8899999998653
No 262
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.11 E-value=0.13 Score=36.77 Aligned_cols=30 Identities=40% Similarity=0.491 Sum_probs=21.2
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
+.++.+..|+||||++..|+. .|. .++|+|
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-----lg~--~~id~D 35 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-----LGI--NVIDAD 35 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-----TTC--EEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-----cCC--EEEEcc
Confidence 444478899999999887764 464 456664
No 263
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=91.95 E-value=0.23 Score=40.38 Aligned_cols=35 Identities=20% Similarity=0.078 Sum_probs=29.8
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
..++|+|++. .||||++.-++..|.. .|++|-++-
T Consensus 107 ~~~vI~VTGT---nGKTTT~~ml~~iL~~-~g~~~~~~g 141 (498)
T 1e8c_A 107 NLRLVGVTGT---NGKTTTTQLLAQWSQL-LGEISAVMG 141 (498)
T ss_dssp SSEEEEEESS---SCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred cCeEEEEeCC---cChHHHHHHHHHHHHh-CCCCEEEEC
Confidence 4689999754 5899999999999999 999987663
No 264
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=91.94 E-value=0.29 Score=39.15 Aligned_cols=37 Identities=30% Similarity=0.437 Sum_probs=31.1
Q ss_pred CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
....++|.|++. -||||++.-|+..|.. .|+||-++-
T Consensus 49 ~~~~~vI~VtGT---NGKgSt~~~l~~iL~~-~G~~vg~~t 85 (437)
T 3nrs_A 49 KPAPKIFTVAGT---NGKGTTCCTLEAILLA-AGLRVGVYS 85 (437)
T ss_dssp CSSSEEEEEECS---SSHHHHHHHHHHHHHH-TTCCEEEEC
T ss_pred cccCCEEEEECC---cChHHHHHHHHHHHHH-CCCcEEEEC
Confidence 445789999755 5899999999999999 999997653
No 265
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.93 E-value=0.081 Score=38.34 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.2
Q ss_pred EEecCCCCCChhhHHHHHHHHH
Q 030973 35 AVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~l 56 (168)
.++.+.+|+||||+|..||..+
T Consensus 61 ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 61 LVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4557899999999999999987
No 266
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.92 E-value=0.13 Score=36.90 Aligned_cols=21 Identities=43% Similarity=0.420 Sum_probs=17.6
Q ss_pred EecCCCCCChhhHHHHHHHHH
Q 030973 36 VASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~l 56 (168)
++-+.+|+||+|.|..||..+
T Consensus 4 il~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 4 VFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999765
No 267
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.91 E-value=0.079 Score=42.17 Aligned_cols=36 Identities=28% Similarity=0.247 Sum_probs=25.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.+.+.++.+-+|+||||++..|+..+ | ...||.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~----~--~~~i~~D~~ 292 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA----G--YVHVNRDTL 292 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG----T--CEECCGGGS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc----C--cEEEccchH
Confidence 44566668899999999998887533 2 355666653
No 268
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.84 E-value=0.16 Score=43.89 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=29.3
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
+.++.+.+|+|||++.+.+...+.+..+.+||++-..
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 5566788999999999999888765357899887543
No 269
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.82 E-value=0.11 Score=36.86 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=25.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+.+|+++ +..|+||||++..|+..+ ..+.+|+.|..
T Consensus 21 ~~~i~i~-G~~GsGKSTl~~~L~~~~-----~~~~~i~~D~~ 56 (207)
T 2qt1_A 21 TFIIGIS-GVTNSGKTTLAKNLQKHL-----PNCSVISQDDF 56 (207)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHTTS-----TTEEEEEGGGG
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHhc-----CCcEEEeCCcc
Confidence 5667764 677999999987766533 14778888864
No 270
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.71 E-value=0.14 Score=36.84 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=19.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+++|+| +++.|+||+|+|-.+...+
T Consensus 11 ~~II~i-tGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 11 RLVLLF-SGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp SEEEEE-EECTTSSHHHHHHHHHHHH
T ss_pred CEEEEE-ECCCCCChHHHHHHHHHHc
Confidence 455555 7899999999998876655
No 271
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.58 E-value=0.21 Score=36.90 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=25.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
...-.++.+..|+|||++|..+|..+ +.+++.+++
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~----~~~~~~i~~ 97 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES----NFPFIKICS 97 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH----TCSEEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh----CCCEEEEeC
Confidence 33344456788999999999998863 556666654
No 272
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.55 E-value=0.13 Score=39.00 Aligned_cols=34 Identities=26% Similarity=0.140 Sum_probs=26.4
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.++.+..|+|||+++..++..+. .+++.+++..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~----~~~~~~~~~~ 65 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELN----LPYIYLDLRK 65 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT----CCEEEEEGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcC----CCEEEEEchh
Confidence 555678889999999999887653 3578888764
No 273
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=91.50 E-value=0.28 Score=40.33 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=30.3
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
..++|+|++. .||||++.-++..|.. .|++|-++-.
T Consensus 145 ~~~vI~VTGT---nGKTTT~~ml~~iL~~-~G~~~g~~gs 180 (535)
T 2wtz_A 145 RLTVIGITGT---SGKTTTTYLVEAGLRA-AGRVAGLIGT 180 (535)
T ss_dssp SSEEEEEESS---SCHHHHHHHHHHHHHH-TTCCEEEESS
T ss_pred cceEEEeeCC---CChHHHHHHHHHHHHH-CCCCEEEECC
Confidence 4689999765 5899999999999999 9999887643
No 274
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=91.50 E-value=0.26 Score=40.04 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=29.6
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli 67 (168)
...++|.|++.. ||||++.-|+..|.. .|+||-++
T Consensus 62 ~~~~vI~VtGTN---GKtST~~~l~~iL~~-~G~~vG~~ 96 (487)
T 2vos_A 62 RSYPSIHIAGTN---GKTSVARMVDALVTA-LHRRTGRT 96 (487)
T ss_dssp GSSCEEEEECSS---SHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred hcCeEEEEeCCC---CcHHHHHHHHHHHHH-cCCCeEEE
Confidence 447899997654 899999999999999 99999654
No 275
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=91.50 E-value=0.17 Score=37.77 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=30.4
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 26 ~~k~vlVTGas~GIG~-----aia~~l~~-~G~~V~~~~r~~ 61 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGR-----ATAELFAK-NGAYVVVADVNE 61 (277)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 3689999999998776 57788889 999999998764
No 276
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.48 E-value=0.12 Score=36.20 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=19.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+.+|++ .+..|+||||++..|+..+
T Consensus 6 g~~i~l-~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVL-SGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEE-ECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHhh
Confidence 455665 5678999999998887765
No 277
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=91.39 E-value=0.22 Score=38.14 Aligned_cols=31 Identities=42% Similarity=0.373 Sum_probs=26.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEE
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVG 65 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVl 65 (168)
.++|+|++ --||||++.-++..|.. .|+++-
T Consensus 108 ~~~IaVTG---TnGKTTTt~ll~~iL~~-~g~~~~ 138 (326)
T 3eag_A 108 HWVLGVAG---THGKTTTASMLAWVLEY-AGLAPG 138 (326)
T ss_dssp SEEEEEES---SSCHHHHHHHHHHHHHH-TTCCCE
T ss_pred CCEEEEEC---CCCHHHHHHHHHHHHHH-cCCCce
Confidence 68999975 46899999999999999 998864
No 278
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.37 E-value=0.19 Score=39.11 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=26.0
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|.+ .+..|+|||++|..+|..+ +.+++.+++..
T Consensus 73 ~~ill-~Gp~GtGKT~la~~la~~l----~~~~~~~~~~~ 107 (376)
T 1um8_A 73 SNILL-IGPTGSGKTLMAQTLAKHL----DIPIAISDATS 107 (376)
T ss_dssp CCEEE-ECCTTSSHHHHHHHHHHHT----TCCEEEEEGGG
T ss_pred CCEEE-ECCCCCCHHHHHHHHHHHh----CCCEEEecchh
Confidence 34444 5778999999999988755 56777777654
No 279
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.30 E-value=0.23 Score=43.12 Aligned_cols=39 Identities=28% Similarity=0.264 Sum_probs=32.5
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
-.++.+..|+|||++|..+|..+.. .+.+++.||+....
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~-~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFD-TEEAMIRIDMTEYM 628 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHS-SGGGEEEECTTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC-CCCcEEEEechhcc
Confidence 3444678899999999999999988 88899999987543
No 280
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.28 E-value=0.084 Score=40.53 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=26.0
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.++.+..|+||||++..+|..+.. .+.++.+++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~~~~~ 84 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG-KNYSNMVLELNA 84 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT-TSHHHHEEEECT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC-CCccceEEEEcC
Confidence 345778999999999999999866 444444444443
No 281
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.22 E-value=0.1 Score=42.23 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=30.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+.+++++ +..|+||||++..|+-.+....|++++.+|.|+.
T Consensus 138 Ge~v~Iv-GpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~ 178 (460)
T 2npi_A 138 GPRVVIV-GGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQ 178 (460)
T ss_dssp CCCEEEE-ESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCcccccCCceeEEEcCCcc
Confidence 6777776 5679999999999998776623426567888764
No 282
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.16 E-value=0.16 Score=41.90 Aligned_cols=41 Identities=17% Similarity=0.100 Sum_probs=27.6
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHH---HHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVAL---ASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~l---a~~~g~rVlliD~D~ 71 (168)
..++|+ +.+-||+||||+|..++... .......|..++.+.
T Consensus 146 ~~~~v~-I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 146 EPGWVT-IHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp SCEEEE-EECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred CCceEE-EEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 355555 47889999999999987643 221333577777654
No 283
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.14 E-value=0.25 Score=37.83 Aligned_cols=36 Identities=22% Similarity=0.118 Sum_probs=27.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
.+-|.+ .+.+|+|||++|..+|..+ .+..++.+++.
T Consensus 45 ~~~iLL-~GppGtGKT~la~ala~~~---~~~~~~~i~~~ 80 (322)
T 1xwi_A 45 WRGILL-FGPPGTGKSYLAKAVATEA---NNSTFFSISSS 80 (322)
T ss_dssp CSEEEE-ESSSSSCHHHHHHHHHHHT---TSCEEEEEECC
T ss_pred CceEEE-ECCCCccHHHHHHHHHHHc---CCCcEEEEEhH
Confidence 355665 4788999999999998865 35677777764
No 284
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.10 E-value=0.2 Score=39.99 Aligned_cols=39 Identities=28% Similarity=0.340 Sum_probs=29.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..+|+| .+..|+||||+...++..+.. ...+|+.++-+.
T Consensus 167 ggii~I-~GpnGSGKTTlL~allg~l~~-~~g~I~~~ed~i 205 (418)
T 1p9r_A 167 HGIILV-TGPTGSGKSTTLYAGLQELNS-SERNILTVEDPI 205 (418)
T ss_dssp SEEEEE-ECSTTSCHHHHHHHHHHHHCC-TTSCEEEEESSC
T ss_pred CCeEEE-ECCCCCCHHHHHHHHHhhcCC-CCCEEEEecccc
Confidence 455555 678899999999999988876 566788777544
No 285
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=91.09 E-value=0.18 Score=37.41 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=32.9
Q ss_pred cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.....|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+...
T Consensus 10 ~~~~~k~vlVTGas~GIG~-----aia~~l~~-~G~~V~~~~r~~~~ 50 (269)
T 3vtz_A 10 EEFTDKVAIVTGGSSGIGL-----AVVDALVR-YGAKVVSVSLDEKS 50 (269)
T ss_dssp CTTTTCEEEESSTTSHHHH-----HHHHHHHH-TTCEEEEEESCC--
T ss_pred cCCCCCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEeCCchh
Confidence 3455889999999998886 57788999 99999999987644
No 286
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=90.98 E-value=0.17 Score=40.91 Aligned_cols=35 Identities=34% Similarity=0.413 Sum_probs=23.8
Q ss_pred EecCCCCCChhhHHHHHHHHHHHh------CCCeEEEEeCC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASK------CQLKVGLLDAD 70 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~------~g~rVlliD~D 70 (168)
++.+.+|+|||+++..+|..+... .+.+++.+|+.
T Consensus 205 LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 245 (468)
T 3pxg_A 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG 245 (468)
T ss_dssp EEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC
Confidence 446889999999999999998540 24555555554
No 287
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=90.88 E-value=0.19 Score=36.60 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=19.9
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHH
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALA 57 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la 57 (168)
.|..+++..|+||||++..||..|.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 3445578899999999999997763
No 288
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.71 E-value=0.16 Score=35.86 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=19.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALA 57 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la 57 (168)
++.+++ .+..|+||||+...|+..+.
T Consensus 4 g~~i~l-vGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVL-SGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEE-ECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHhhCc
Confidence 445555 57889999999999987663
No 289
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=90.65 E-value=0.14 Score=38.01 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=24.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
.+-+.+ .+.+|+|||+++..+|.. .+.+++.+++.
T Consensus 51 ~~~~ll-~G~~GtGKT~la~~la~~----~~~~~~~v~~~ 85 (285)
T 3h4m_A 51 PKGILL-YGPPGTGKTLLAKAVATE----TNATFIRVVGS 85 (285)
T ss_dssp CSEEEE-ESSSSSSHHHHHHHHHHH----TTCEEEEEEGG
T ss_pred CCeEEE-ECCCCCcHHHHHHHHHHH----hCCCEEEEehH
Confidence 344554 578899999999888764 45677776653
No 290
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=90.65 E-value=0.22 Score=36.39 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=31.6
Q ss_pred CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
....|++.|+++.||.|+ .+|..|++ .|.+|+++|-+...
T Consensus 19 ~~m~k~vlITGas~gIG~-----~la~~l~~-~G~~V~~~~r~~~~ 58 (251)
T 3orf_A 19 SHMSKNILVLGGSGALGA-----EVVKFFKS-KSWNTISIDFRENP 58 (251)
T ss_dssp ---CCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSCCT
T ss_pred cccCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCCccc
Confidence 344688999999988776 67888999 99999999988754
No 291
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.60 E-value=0.14 Score=37.24 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=19.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
++.|++ .+..|+||||++..|+..+
T Consensus 2 ~~~i~~-~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSI-EGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHC
T ss_pred CeEEEE-EcCCCCCHHHHHHHHHHHc
Confidence 445555 5678999999999998877
No 292
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.56 E-value=0.27 Score=33.85 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=20.2
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
+.++.+..|+||||+.-.+...+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4555678899999999999887753
No 293
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.54 E-value=0.23 Score=39.59 Aligned_cols=31 Identities=16% Similarity=0.066 Sum_probs=25.2
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQL 62 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~ 62 (168)
.++.++++++ .|+||||++..+|...++ .+.
T Consensus 173 rGQr~~IvG~-sG~GKTtLl~~Iar~i~~-~~~ 203 (422)
T 3ice_A 173 RGQRGLIVAP-PKAGKTMLLQNIAQSIAY-NHP 203 (422)
T ss_dssp TTCEEEEECC-SSSSHHHHHHHHHHHHHH-HCT
T ss_pred CCcEEEEecC-CCCChhHHHHHHHHHHhh-cCC
Confidence 3778888765 589999999999999987 543
No 294
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.49 E-value=0.19 Score=35.49 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=17.3
Q ss_pred EEecCCCCCChhhHHHHHHHHH
Q 030973 35 AVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~l 56 (168)
.|+++.+|+||||++..|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999988775543
No 295
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.49 E-value=0.2 Score=38.29 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=29.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.+++++ ++..|+||||+...|... . .|+|+.+|.-|...
T Consensus 4 i~v~~i-~G~~GaGKTTll~~l~~~--~-~~~~~aVi~~d~G~ 42 (318)
T 1nij_A 4 IAVTLL-TGFLGAGKTTLLRHILNE--Q-HGYKIAVIENEFGE 42 (318)
T ss_dssp EEEEEE-EESSSSSCHHHHHHHHHS--C-CCCCEEEECSSCCS
T ss_pred ccEEEE-EecCCCCHHHHHHHHHhh--c-CCCcEEEEEecCcc
Confidence 556666 567899999999887764 2 68899999877643
No 296
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.42 E-value=0.2 Score=36.67 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=24.1
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
-+.+ .+..|+||||++..+|..+ +.+++.+++.
T Consensus 47 ~vll-~G~~GtGKT~la~~la~~~----~~~~~~i~~~ 79 (257)
T 1lv7_A 47 GVLM-VGPPGTGKTLLAKAIAGEA----KVPFFTISGS 79 (257)
T ss_dssp EEEE-ECCTTSCHHHHHHHHHHHH----TCCEEEECSC
T ss_pred eEEE-ECcCCCCHHHHHHHHHHHc----CCCEEEEeHH
Confidence 3444 5788999999999998765 4456666654
No 297
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=90.41 E-value=0.23 Score=39.85 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=24.7
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
+-+.+ .+.+|+|||++|..+|..+.. +...+.+++
T Consensus 64 ~~iLl-~GppGtGKT~la~ala~~l~~--~~~~~~~~~ 98 (456)
T 2c9o_A 64 RAVLL-AGPPGTGKTALALAIAQELGS--KVPFCPMVG 98 (456)
T ss_dssp CEEEE-ECCTTSSHHHHHHHHHHHHCT--TSCEEEEEG
T ss_pred CeEEE-ECCCcCCHHHHHHHHHHHhCC--CceEEEEeH
Confidence 44555 678999999999999998753 244444443
No 298
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=90.14 E-value=0.52 Score=38.73 Aligned_cols=42 Identities=26% Similarity=0.349 Sum_probs=38.3
Q ss_pred CeEEEEecCC-CCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGK-GGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~k-gG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+|-|.|+++- +|.||-.+|+.++..|.. +|.||-++-+||.-
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~-~g~~v~~~k~dpyl 45 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKR-RGYNVTAVKIDPYI 45 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHH-TTCCEEEEEEECSS
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHH-CCceEEEEecCcce
Confidence 6788888866 999999999999999999 99999999999954
No 299
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=90.09 E-value=0.2 Score=38.40 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=19.6
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHH
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
..+++ .+..|+||||++..+|..+
T Consensus 52 ~~~ll-~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLL-AGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEE-ESSTTSSHHHHHHHHHHHH
T ss_pred CeEEE-ECCCCCcHHHHHHHHHHHh
Confidence 44544 6788999999999999877
No 300
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.09 E-value=0.23 Score=36.00 Aligned_cols=25 Identities=36% Similarity=0.379 Sum_probs=19.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+.+|++ .+..|+||||++..||..+
T Consensus 16 ~~~i~i-~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAI-DGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEE-ECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHc
Confidence 556666 5678999999999888755
No 301
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.08 E-value=0.15 Score=35.52 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=19.3
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHH
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALA 57 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la 57 (168)
++++ .+..|+||||++..|+..+.
T Consensus 3 ii~l-~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVI-SGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEE-ESSSSSSHHHHHHHHHHHCG
T ss_pred EEEE-ECCCCCCHHHHHHHHHhhCC
Confidence 4444 67889999999999987765
No 302
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=89.99 E-value=0.096 Score=39.46 Aligned_cols=34 Identities=35% Similarity=0.373 Sum_probs=24.5
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCC--eEEEEeC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQL--KVGLLDA 69 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~--rVlliD~ 69 (168)
.++.+.+|+||||++..++..+.. .+. .++.+++
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~-~~~~~~~~~~~~ 84 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFG-ENWRHNFLELNA 84 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHG-GGHHHHEEEEET
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC-CcccCceEEeec
Confidence 455778899999999999998865 332 3555543
No 303
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.92 E-value=0.37 Score=36.25 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=25.9
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.+.+ .+..|+|||++|..++..+ +.++..+++..
T Consensus 39 ~~vll-~G~~GtGKT~la~~i~~~~----~~~~~~~~~~~ 73 (324)
T 1hqc_A 39 EHLLL-FGPPGLGKTTLAHVIAHEL----GVNLRVTSGPA 73 (324)
T ss_dssp CCCEE-ECCTTCCCHHHHHHHHHHH----TCCEEEECTTT
T ss_pred CcEEE-ECCCCCCHHHHHHHHHHHh----CCCEEEEeccc
Confidence 34444 6788999999999998765 45677777654
No 304
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=89.88 E-value=0.25 Score=36.81 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=32.0
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
-..|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+...
T Consensus 31 l~gk~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~r~~~~ 69 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGA-----AIAEGLAG-AGAHVILHGVKPGS 69 (275)
T ss_dssp CTTCEEEETTCSSHHHH-----HHHHHHHH-TTCEEEEEESSTTT
T ss_pred CCCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEcCCHHH
Confidence 34789999999888776 47788889 99999999987643
No 305
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=89.80 E-value=0.27 Score=38.06 Aligned_cols=35 Identities=34% Similarity=0.396 Sum_probs=25.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
.+.|.+ .+.+|+|||++|..+|..+ +.+.+.+++-
T Consensus 51 ~~~vll-~GppGtGKT~la~~ia~~~----~~~~~~~~~~ 85 (363)
T 3hws_A 51 KSNILL-IGPTGSGKTLLAETLARLL----DVPFTMADAT 85 (363)
T ss_dssp CCCEEE-ECCTTSSHHHHHHHHHHHT----TCCEEEEEHH
T ss_pred CCeEEE-ECCCCCCHHHHHHHHHHHc----CCCEEEechH
Confidence 344555 5778999999999988765 5567777653
No 306
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.75 E-value=0.32 Score=42.24 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=27.4
Q ss_pred EecCCCCCChhhHHHHHHHHHHHh------CCCeEEEEeCCC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASK------CQLKVGLLDADV 71 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~------~g~rVlliD~D~ 71 (168)
+..+.+|+|||+++..+|..+... .+.+++.+|+..
T Consensus 195 lL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 236 (854)
T 1qvr_A 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS 236 (854)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--
T ss_pred EEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHH
Confidence 345788999999999999998651 277888888743
No 307
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.70 E-value=0.26 Score=35.44 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=17.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAV 54 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~ 54 (168)
.+.|++ .+..|+||||+|..|+.
T Consensus 34 g~~ilI-~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLI-TGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEE-ECCCTTTTHHHHHHHHT
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHH
Confidence 455555 67889999998877654
No 308
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=89.62 E-value=0.15 Score=36.24 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=17.8
Q ss_pred EEEecCCCCCChhhHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+.++.+..|+||||++..|+..+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 34457788999999998887654
No 309
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=89.58 E-value=0.31 Score=34.00 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=18.5
Q ss_pred EEEecCCCCCChhhHHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALA 57 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la 57 (168)
+++ .+..|+||||+...++..+.
T Consensus 3 i~l-~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 3 III-TGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEE-ECCTTSSHHHHHHHHHHHHG
T ss_pred EEE-ECCCCCCHHHHHHHHHHHhC
Confidence 444 57889999999999988773
No 310
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=89.53 E-value=0.16 Score=36.14 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=19.0
Q ss_pred EEEecCCCCCChhhHHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALA 57 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la 57 (168)
|..+++..|+||||++..||..|.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhC
Confidence 444478889999999999887663
No 311
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.52 E-value=0.22 Score=36.85 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=24.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+++|++ .+..|+||||++..||..+.. -++|.|.
T Consensus 48 g~~i~l-~G~~GsGKSTl~~~La~~lg~------~~~d~d~ 81 (250)
T 3nwj_A 48 GRSMYL-VGMMGSGKTTVGKIMARSLGY------TFFDCDT 81 (250)
T ss_dssp TCCEEE-ECSTTSCHHHHHHHHHHHHTC------EEEEHHH
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHhcCC------cEEeCcH
Confidence 445555 578899999999999987643 4666664
No 312
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=89.43 E-value=0.53 Score=37.58 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=28.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli 67 (168)
.++|+|++. -||||++.-++..|.. .|++|.+.
T Consensus 104 ~~vI~VTGT---nGKTTT~~ml~~iL~~-~g~~~~~~ 136 (439)
T 2x5o_A 104 APIVAITGS---NGKSTVTTLVGEMAKA-AGVNVGVG 136 (439)
T ss_dssp SCEEEEECS---SSHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCEEEEECC---CCHHHHHHHHHHHHHh-cCCCEEEe
Confidence 678999754 5899999999999999 99988754
No 313
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=89.41 E-value=0.36 Score=37.41 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=26.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
.+.|.+ .+..|+|||++|..+|.. .+..++.+++.
T Consensus 117 ~~~vLl-~GppGtGKT~la~aia~~----~~~~~~~i~~~ 151 (357)
T 3d8b_A 117 PKGILL-FGPPGTGKTLIGKCIASQ----SGATFFSISAS 151 (357)
T ss_dssp CSEEEE-ESSTTSSHHHHHHHHHHH----TTCEEEEEEGG
T ss_pred CceEEE-ECCCCCCHHHHHHHHHHH----cCCeEEEEehH
Confidence 455555 577899999999988764 46677777764
No 314
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.39 E-value=0.21 Score=38.49 Aligned_cols=26 Identities=31% Similarity=0.587 Sum_probs=20.8
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
+.+.+ .+.+|+|||++|..+|..+..
T Consensus 71 ~~vLl-~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 71 RAVLI-AGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CEEEE-EESTTSSHHHHHHHHHHHHCS
T ss_pred CEEEE-ECCCCCCHHHHHHHHHHHhcc
Confidence 45555 567899999999999998854
No 315
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.37 E-value=0.25 Score=35.76 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=19.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+.++++ .+..|+||||+...|+..+
T Consensus 16 G~ii~l-~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIV-SAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEE-ECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEE-ECCCCCCHHHHHHHHhccC
Confidence 445555 6788999999998887755
No 316
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.30 E-value=0.21 Score=35.86 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=20.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
++++++ .+..|+||||+...|+..+
T Consensus 23 G~~~~l-vGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVI-CGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEE-ECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHhhC
Confidence 566776 4678999999999888755
No 317
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.29 E-value=0.2 Score=37.36 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=25.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
.+.+.+ .+.+|+||||+|..+|..+ +...+.+++.
T Consensus 54 ~~~vll-~Gp~GtGKT~la~~la~~~----~~~~~~i~~~ 88 (297)
T 3b9p_A 54 AKGLLL-FGPPGNGKTLLARAVATEC----SATFLNISAA 88 (297)
T ss_dssp CSEEEE-ESSSSSCHHHHHHHHHHHT----TCEEEEEEST
T ss_pred CCeEEE-ECcCCCCHHHHHHHHHHHh----CCCeEEeeHH
Confidence 445555 5788999999999887644 5567767664
No 318
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.28 E-value=0.14 Score=38.43 Aligned_cols=35 Identities=34% Similarity=0.330 Sum_probs=25.5
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCC--CeEEEEeCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQ--LKVGLLDAD 70 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g--~rVlliD~D 70 (168)
.++.+.+|+|||+++..++..+.. .+ ..++-+++.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLG-RSYADGVLELNAS 81 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG-GGHHHHEEEECTT
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC-CcccCCEEEecCc
Confidence 455788899999999999998854 33 235555543
No 319
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.27 E-value=0.18 Score=37.05 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=18.3
Q ss_pred EEecCCCCCChhhHHHHHHHHH
Q 030973 35 AVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~l 56 (168)
.++.+..|+|||++|..+|..+
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 3456889999999999999865
No 320
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.26 E-value=0.46 Score=38.07 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=26.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
++-|.+ .+.+|+|||++|.++|..+ |...+.|++.
T Consensus 206 prGiLL-~GPPGtGKT~lakAiA~~~----~~~~~~v~~~ 240 (428)
T 4b4t_K 206 PRGVLL-YGPPGTGKTMLVKAVANST----KAAFIRVNGS 240 (428)
T ss_dssp CCEEEE-ESCTTTTHHHHHHHHHHHH----TCEEEEEEGG
T ss_pred CceEEE-ECCCCCCHHHHHHHHHHHh----CCCeEEEecc
Confidence 444555 5788999999999998765 5677777764
No 321
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=89.19 E-value=0.33 Score=40.42 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=25.8
Q ss_pred ecCCCCCChhhHHHHHHHHHHHhCC----CeEEEEeCC
Q 030973 37 ASGKGGVGKSTTAVNLAVALASKCQ----LKVGLLDAD 70 (168)
Q Consensus 37 ~s~kgG~GKTt~a~~LA~~la~~~g----~rVlliD~D 70 (168)
+.+.+|+|||++..+-+.++.. .+ .++|++-..
T Consensus 27 V~a~aGsGKT~~l~~ri~~l~~-~~~~~~~~iL~ltft 63 (647)
T 3lfu_A 27 VLAGAGSGKTRVLVHRIAWLMS-VENCSPYSIMAVTFT 63 (647)
T ss_dssp EEECTTSCHHHHHHHHHHHHHH-TSCCCGGGEEEEESS
T ss_pred EEECCCCCHHHHHHHHHHHHHH-hCCCChhhEEEEecc
Confidence 3466899999999888877776 43 689998764
No 322
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=89.19 E-value=0.41 Score=39.24 Aligned_cols=32 Identities=41% Similarity=0.454 Sum_probs=27.2
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEE
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVG 65 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVl 65 (168)
..++|+|++. -||||++.-++..|.. .|+++.
T Consensus 121 ~~~vIaVTGT---nGKTTTt~li~~iL~~-~G~~~~ 152 (524)
T 3hn7_A 121 SRHVIAVAGT---HGKTTTTTMLAWILHY-AGIDAG 152 (524)
T ss_dssp GSEEEEEECS---SCHHHHHHHHHHHHHH-TTCCCE
T ss_pred cCcEEEEECC---CCHHHHHHHHHHHHHH-cCCCce
Confidence 3689999765 4899999999999999 998764
No 323
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=89.17 E-value=0.58 Score=37.74 Aligned_cols=38 Identities=26% Similarity=0.244 Sum_probs=30.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCe-EEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLK-VGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~r-VlliD~D~~ 72 (168)
.++|+|++. -||||++.-++..|.. .|++ ++.+..+..
T Consensus 118 ~~vI~VTGT---nGKTTTt~ml~~iL~~-~G~~p~~~igg~~~ 156 (475)
T 1p3d_A 118 RHGIAVAGT---HGKTTTTAMISMIYTQ-AKLDPTFVNGGLVK 156 (475)
T ss_dssp SEEEEEESS---SCHHHHHHHHHHHHHH-TTCCCEEEEEEEET
T ss_pred CCEEEEECC---CCHHHHHHHHHHHHHh-CCCCCEEEECCccc
Confidence 578888755 5899999999999999 9986 666766553
No 324
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=89.11 E-value=0.29 Score=36.22 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=30.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
-|++.|+++.+|.|+. +|..|++ .|.+|+++|.|.
T Consensus 2 nK~vlVTGas~GIG~a-----ia~~la~-~Ga~V~~~~~~~ 36 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQ-----ICLDFLE-AGDKVCFIDIDE 36 (247)
T ss_dssp CCEEEEESTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEecCCCHHHHH-----HHHHHHH-CCCEEEEEeCCH
Confidence 3789999999998884 6788999 999999999875
No 325
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=89.02 E-value=0.22 Score=35.75 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=28.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
||++.|+++.+|.|+ .+|..|++ .|.+|++++-+.
T Consensus 1 Mk~vlVTGas~gIG~-----~~a~~l~~-~G~~V~~~~r~~ 35 (230)
T 3guy_A 1 MSLIVITGASSGLGA-----ELAKLYDA-EGKATYLTGRSE 35 (230)
T ss_dssp --CEEEESTTSHHHH-----HHHHHHHH-TTCCEEEEESCH
T ss_pred CCEEEEecCCchHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 468999998888776 56778888 999999998775
No 326
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=88.97 E-value=0.34 Score=35.22 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=29.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
||++.|+++.||.|+. +|..|++ .|.+|++++-+..
T Consensus 1 mk~vlVTGas~gIG~~-----~a~~l~~-~G~~V~~~~r~~~ 36 (257)
T 1fjh_A 1 MSIIVISGCATGIGAA-----TRKVLEA-AGHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEeCCch
Confidence 4689999988887775 6778888 9999999987753
No 327
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=88.97 E-value=0.38 Score=32.94 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+.++++. +..|+||||+...++..+
T Consensus 33 Ge~v~L~-G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLN-GDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhC
Confidence 6777775 567999999999999988
No 328
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=88.96 E-value=0.31 Score=35.27 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=30.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
++++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 3 ~k~vlVTGas~GIG~-----a~a~~l~~-~G~~V~~~~r~~ 37 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGR-----ALTIGLVE-RGHQVSMMGRRY 37 (235)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence 578999999998887 57788899 999999998875
No 329
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=88.93 E-value=0.37 Score=35.19 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=30.9
Q ss_pred cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..-..|++.|+++.||.|+. +|..|++ .|.+|++++-+.
T Consensus 15 ~~~~~k~vlVTGas~gIG~~-----~a~~l~~-~G~~V~~~~r~~ 53 (249)
T 1o5i_A 15 LGIRDKGVLVLAASRGIGRA-----VADVLSQ-EGAEVTICARNE 53 (249)
T ss_dssp -CCTTCEEEEESCSSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred hccCCCEEEEECCCCHHHHH-----HHHHHHH-CCCEEEEEcCCH
Confidence 34457899999999988875 6778888 999999998664
No 330
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=88.89 E-value=0.27 Score=35.93 Aligned_cols=36 Identities=19% Similarity=0.060 Sum_probs=29.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
||++.|+++.||.|+. +|..|++ .|.+|+++|-+..
T Consensus 1 Mk~vlVTGas~gIG~~-----ia~~l~~-~G~~V~~~~r~~~ 36 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMG-----SALRLSE-AGHTVACHDESFK 36 (254)
T ss_dssp -CEEEESSTTSTTHHH-----HHHHHHH-TTCEEEECCGGGG
T ss_pred CeEEEEeCCCchHHHH-----HHHHHHH-CCCEEEEEeCCHH
Confidence 4689999999999985 7778888 9999999987653
No 331
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=88.84 E-value=0.48 Score=35.15 Aligned_cols=31 Identities=16% Similarity=0.051 Sum_probs=24.5
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCC-CeEEEE
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQ-LKVGLL 67 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g-~rVlli 67 (168)
+....-|+|||.++..++..+.. .+ .+||+|
T Consensus 132 ll~~~tGsGKT~~~~~~~~~~~~-~~~~~~lil 163 (282)
T 1rif_A 132 ILNLPTSAGRSLIQALLARYYLE-NYEGKILII 163 (282)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHH-HCSSEEEEE
T ss_pred EEEcCCCCCcHHHHHHHHHHHHH-cCCCeEEEE
Confidence 34788899999999888887665 44 488888
No 332
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=88.83 E-value=0.36 Score=35.60 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=17.9
Q ss_pred eEEEEecCCCCCChhhHHHHHHHH
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVA 55 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~ 55 (168)
.+|+++ ++.|+||||++..|+..
T Consensus 2 ~~i~lt-G~~~sGK~tv~~~l~~~ 24 (241)
T 1dek_A 2 KLIFLS-GVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHh
Confidence 567774 68999999999877653
No 333
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=88.83 E-value=0.36 Score=36.00 Aligned_cols=36 Identities=28% Similarity=0.231 Sum_probs=30.8
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 28 ~gk~vlVTGas~gIG~-----aia~~la~-~G~~V~~~~r~~ 63 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGL-----AVARRLAD-EGCHVLCADIDG 63 (277)
T ss_dssp TTCEEEETTTTSTHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 4689999999999887 57788889 999999999764
No 334
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=88.71 E-value=0.3 Score=37.21 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=24.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
.+-|.+ .+.+|+|||++|..+|..+ +.+++.|++
T Consensus 51 ~~~vLl-~GppGtGKT~la~aia~~~----~~~~~~v~~ 84 (322)
T 3eie_A 51 TSGILL-YGPPGTGKSYLAKAVATEA----NSTFFSVSS 84 (322)
T ss_dssp CCEEEE-ECSSSSCHHHHHHHHHHHH----TCEEEEEEH
T ss_pred CCeEEE-ECCCCCcHHHHHHHHHHHH----CCCEEEEch
Confidence 344555 5778999999999888754 456666654
No 335
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.65 E-value=0.27 Score=35.91 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=17.6
Q ss_pred EEEecCCCCCChhhHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+++ .+..|+||||++..+|..+
T Consensus 52 ~ll-~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLL-VGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEE-ECCTTSSHHHHHHHHHHHT
T ss_pred EEE-ECCCCCCHHHHHHHHHHHh
Confidence 444 5788999999999988654
No 336
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.60 E-value=0.31 Score=37.08 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=24.9
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHh--CCCeEEEEeC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASK--CQLKVGLLDA 69 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~--~g~rVlliD~ 69 (168)
.++.+..|+||||++..+|..+... ...++.-+++
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 4557888999999999999988631 2345555544
No 337
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=88.58 E-value=0.4 Score=35.43 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=30.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+..
T Consensus 11 ~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~~ 46 (271)
T 3tzq_B 11 NKVAIITGACGGIGL-----ETSRVLAR-AGARVVLADLPET 46 (271)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEECTTS
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEcCCHH
Confidence 689999999988776 57788889 9999999998764
No 338
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.56 E-value=0.31 Score=35.22 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=24.9
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
.+..|++ -+..|+||||++..|+.. +.+|.+..-+
T Consensus 19 ~g~~i~i-~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~ 53 (230)
T 2vp4_A 19 QPFTVLI-EGNIGSGKTTYLNHFEKY-----KNDICLLTEP 53 (230)
T ss_dssp CCEEEEE-ECSTTSCHHHHHHTTGGG-----TTTEEEECCT
T ss_pred CceEEEE-ECCCCCCHHHHHHHHHhc-----cCCeEEEecC
Confidence 3667776 577899999988776653 5567776654
No 339
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=88.54 E-value=0.25 Score=36.49 Aligned_cols=38 Identities=16% Similarity=0.028 Sum_probs=30.6
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
-..|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+..
T Consensus 25 l~~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~~ 62 (260)
T 3gem_A 25 LSSAPILITGASQRVGL-----HCALRLLE-HGHRVIISYRTEH 62 (260)
T ss_dssp --CCCEEESSTTSHHHH-----HHHHHHHH-TTCCEEEEESSCC
T ss_pred CCCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCChH
Confidence 34678999998888776 57788899 9999999998764
No 340
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=88.52 E-value=0.4 Score=35.37 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=31.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
+|++.|+++.+|.|+. +|..|++ .|.+|++.|-|..
T Consensus 11 GK~alVTGas~GIG~a-----ia~~la~-~Ga~Vv~~~~~~~ 46 (242)
T 4b79_A 11 GQQVLVTGGSSGIGAA-----IAMQFAE-LGAEVVALGLDAD 46 (242)
T ss_dssp TCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESSTT
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEeCCHH
Confidence 7899999999998875 6788999 9999999998864
No 341
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.50 E-value=0.35 Score=37.11 Aligned_cols=25 Identities=40% Similarity=0.441 Sum_probs=20.4
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
..++.+..|+||||++..+|..+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3455788899999999999988754
No 342
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=88.49 E-value=0.52 Score=38.01 Aligned_cols=37 Identities=27% Similarity=0.232 Sum_probs=30.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeE-EEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKV-GLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rV-lliD~D~ 71 (168)
.++|+|++. -||||++.-++..|.. .|++| +++....
T Consensus 114 ~~vI~VTGT---nGKTTTt~ml~~iL~~-~G~~~~~~~~g~~ 151 (469)
T 1j6u_A 114 KEEFAVTGT---DGKTTTTAMVAHVLKH-LRKSPTVFLGGIM 151 (469)
T ss_dssp CCEEEEECS---SSHHHHHHHHHHHHHH-TTCCCEEECSSCC
T ss_pred CCEEEEECC---CCHHHHHHHHHHHHHH-cCCCceEEECCee
Confidence 578999765 5899999999999999 99886 5565554
No 343
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=88.48 E-value=0.68 Score=37.51 Aligned_cols=38 Identities=26% Similarity=0.204 Sum_probs=30.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCe-EEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLK-VGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~r-VlliD~D~~ 72 (168)
.++|+|++. -||||++.-++..|.. .|++ ++.+..+..
T Consensus 119 ~~vI~VTGT---nGKTTTt~ml~~iL~~-~G~~p~~~igg~~~ 157 (491)
T 2f00_A 119 RHGIAIAGT---HGKTTTTAMVSSIYAE-AGLDPTFVNGGLVK 157 (491)
T ss_dssp SEEEEEESS---SCHHHHHHHHHHHHHH-TTCCCEEEEEEEET
T ss_pred CCEEEEECC---CCHHHHHHHHHHHHHh-CCCCCEEEECCeec
Confidence 578888755 5899999999999999 9986 666666553
No 344
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=88.48 E-value=0.74 Score=36.88 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=27.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEE
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL 66 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVll 66 (168)
.++|+|++. -||||++.-++..|.. .|++|.+
T Consensus 112 ~~~IaVTGT---nGKTTTt~ml~~iL~~-~g~~~~~ 143 (451)
T 3lk7_A 112 SQLIGITGS---NGKTTTTTMIAEVLNA-GGQRGLL 143 (451)
T ss_dssp SEEEEEECS---SCHHHHHHHHHHHHHH-TTCCEEE
T ss_pred CCEEEEECC---CCHHHHHHHHHHHHHh-cCCCEEE
Confidence 588999765 4799999999999999 9988754
No 345
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.47 E-value=0.56 Score=37.69 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=26.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
++-|.++ +.+|+|||++|.++|..+ |...+.|++.
T Consensus 215 prGvLL~-GPPGtGKTllAkAiA~e~----~~~~~~v~~s 249 (437)
T 4b4t_L 215 PKGVLLY-GPPGTGKTLLAKAVAATI----GANFIFSPAS 249 (437)
T ss_dssp CCEEEEE-SCTTSSHHHHHHHHHHHH----TCEEEEEEGG
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHh----CCCEEEEehh
Confidence 4556664 778999999999988765 5577777654
No 346
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.39 E-value=0.4 Score=33.84 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=22.2
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQ 61 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g 61 (168)
++++ -+..|+||||+...++..+.. .|
T Consensus 3 ~i~i-~G~nG~GKTTll~~l~g~~~~-~G 29 (189)
T 2i3b_A 3 HVFL-TGPPGVGKTTLIHKASEVLKS-SG 29 (189)
T ss_dssp CEEE-ESCCSSCHHHHHHHHHHHHHH-TT
T ss_pred EEEE-ECCCCChHHHHHHHHHhhccc-CC
Confidence 4555 478899999999999998885 78
No 347
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=88.33 E-value=0.27 Score=37.11 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=22.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
.+.|.+ .+..|+|||++|..+|..+ +...+.|+
T Consensus 49 ~~~vLL-~Gp~GtGKT~la~ala~~~----~~~~i~v~ 81 (301)
T 3cf0_A 49 SKGVLF-YGPPGCGKTLLAKAIANEC----QANFISIK 81 (301)
T ss_dssp CSEEEE-ECSSSSSHHHHHHHHHHHT----TCEEEEEC
T ss_pred CceEEE-ECCCCcCHHHHHHHHHHHh----CCCEEEEE
Confidence 445555 5788999999999888643 34455554
No 348
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=88.30 E-value=0.54 Score=42.22 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=29.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHH--HHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVA--LASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~--la~~~g~rVlliD~D~~ 72 (168)
.++|+| .+-||+||||+|..++.. ........++.++.+..
T Consensus 150 ~RVV~I-vGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~ 192 (1221)
T 1vt4_I 150 AKNVLI-DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192 (1221)
T ss_dssp SCEEEE-CCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCS
T ss_pred CeEEEE-EcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCC
Confidence 566666 678999999999999853 23214557888888653
No 349
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=88.30 E-value=0.42 Score=34.91 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=30.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+..
T Consensus 7 ~k~~lVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~~ 42 (257)
T 3tpc_A 7 SRVFIVTGASSGLGA-----AVTRMLAQ-EGATVLGLDLKPP 42 (257)
T ss_dssp TCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESSCC
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEeCChH
Confidence 679999999988886 47788889 9999999998764
No 350
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=88.27 E-value=0.41 Score=35.57 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=29.1
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
-..|++.|+++.+|.|+ .+|..|++ .|.+|+++|
T Consensus 29 l~gk~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~ 62 (273)
T 3uf0_A 29 LAGRTAVVTGAGSGIGR-----AIAHGYAR-AGAHVLAWG 62 (273)
T ss_dssp CTTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEE
T ss_pred CCCCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEc
Confidence 34789999999998886 57788899 999999998
No 351
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=88.22 E-value=0.36 Score=35.68 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=30.4
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|++.|+++.||.|+ .+|..|++ .|.+|++++-+.
T Consensus 15 ~~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~ 50 (266)
T 3p19_A 15 MKKLVVITGASSGIGE-----AIARRFSE-EGHPLLLLARRV 50 (266)
T ss_dssp CCCEEEEESTTSHHHH-----HHHHHHHH-TTCCEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence 3689999999999887 57788899 999999998764
No 352
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.14 E-value=0.48 Score=37.90 Aligned_cols=36 Identities=22% Similarity=0.118 Sum_probs=26.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
.+-|.+ .+.+|+|||++|..+|..+ .+..++.|++.
T Consensus 167 ~~~vLL-~GppGtGKT~lA~aia~~~---~~~~~~~v~~~ 202 (444)
T 2zan_A 167 WRGILL-FGPPGTGKSYLAKAVATEA---NNSTFFSISSS 202 (444)
T ss_dssp CSEEEE-ECSTTSSHHHHHHHHHHHC---CSSEEEEECCC
T ss_pred CceEEE-ECCCCCCHHHHHHHHHHHc---CCCCEEEEeHH
Confidence 455665 4788999999999998865 35567666654
No 353
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=88.13 E-value=0.39 Score=35.58 Aligned_cols=35 Identities=31% Similarity=0.381 Sum_probs=30.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 10 gk~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~~~~ 44 (287)
T 3pxx_A 10 DKVVLVTGGARGQGR-----SHAVKLAE-EGADIILFDICH 44 (287)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEECCS
T ss_pred CCEEEEeCCCChHHH-----HHHHHHHH-CCCeEEEEcccc
Confidence 689999999988776 57888999 999999999774
No 354
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=88.01 E-value=0.35 Score=37.47 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=23.8
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
+-|.+ .+..|+|||++|..+|..+ +..++.|++
T Consensus 85 ~~iLL-~GppGtGKT~la~ala~~~----~~~~~~v~~ 117 (355)
T 2qp9_X 85 SGILL-YGPPGTGKSYLAKAVATEA----NSTFFSVSS 117 (355)
T ss_dssp CCEEE-ECSTTSCHHHHHHHHHHHH----TCEEEEEEH
T ss_pred ceEEE-ECCCCCcHHHHHHHHHHHh----CCCEEEeeH
Confidence 34555 4788999999999998765 445665554
No 355
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=87.88 E-value=0.4 Score=34.94 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=30.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 6 gk~vlVTGas~gIG~-----a~a~~l~~-~G~~V~~~~r~~ 40 (247)
T 3rwb_A 6 GKTALVTGAAQGIGK-----AIAARLAA-DGATVIVSDINA 40 (247)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEECSCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 678999999988776 57788899 999999998765
No 356
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=87.84 E-value=0.37 Score=34.81 Aligned_cols=36 Identities=31% Similarity=0.276 Sum_probs=30.1
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|++++-+.
T Consensus 13 ~~k~vlITGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 48 (247)
T 3i1j_A 13 KGRVILVTGAARGIGA-----AAARAYAA-HGASVVLLGRTE 48 (247)
T ss_dssp TTCEEEESSTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHH-CCCEEEEEecCH
Confidence 3678999999888877 46788888 999999998764
No 357
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=87.73 E-value=0.45 Score=35.03 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=31.6
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..|++.|+++.||.|+ ++|..|++ .|.+|+++|-+...
T Consensus 27 ~~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~~~ 64 (260)
T 3un1_A 27 QQKVVVITGASQGIGA-----GLVRAYRD-RNYRVVATSRSIKP 64 (260)
T ss_dssp TCCEEEESSCSSHHHH-----HHHHHHHH-TTCEEEEEESSCCC
T ss_pred CCCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEeCChhh
Confidence 3689999999988886 57788889 99999999987643
No 358
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=87.71 E-value=0.37 Score=34.86 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=21.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
++.|+| .+-.|+||||.+..|+..+..
T Consensus 5 g~~i~~-eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILI-EGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEE-EECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHhcc
Confidence 445555 678899999999999998854
No 359
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=87.70 E-value=0.44 Score=34.61 Aligned_cols=36 Identities=31% Similarity=0.332 Sum_probs=30.4
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 8 ~~k~vlITGas~giG~-----~~a~~l~~-~G~~V~~~~r~~ 43 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQ-----AYAEALAR-EGAAVVVADINA 43 (253)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEcCCH
Confidence 3689999999888776 67888999 999999998764
No 360
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=87.69 E-value=0.33 Score=43.16 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=29.4
Q ss_pred CCCeEEEEecCCCCCChhhHHHHHHHHHHHh---CCCeEEEEeCCC
Q 030973 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASK---CQLKVGLLDADV 71 (168)
Q Consensus 29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~---~g~rVlliD~D~ 71 (168)
...++|++ .+-||+||||+|..++...... ....|+.++...
T Consensus 145 ~~~~~v~i-~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 145 GEPGWVTI-YGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp TSCEEEEE-ECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCCEEEE-EeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 34566666 6799999999999888764221 234677888765
No 361
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=87.67 E-value=0.43 Score=35.27 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=30.5
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 12 ~gk~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 47 (278)
T 3sx2_A 12 TGKVAFITGAARGQGR-----AHAVRLAA-DGADIIAVDLCD 47 (278)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEECCS
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHH-CCCeEEEEeccc
Confidence 3689999999998886 46788889 999999999874
No 362
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=87.66 E-value=0.44 Score=34.77 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=29.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 12 ~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~ 46 (252)
T 3f1l_A 12 DRIILVTGASDGIGR-----EAAMTYAR-YGATVILLGRNE 46 (252)
T ss_dssp TCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEeCCCChHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 689999999988876 56788888 999999998765
No 363
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=87.65 E-value=0.69 Score=36.12 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=26.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+.|.+ .+..|+|||++|..+|.. .+..++.+++..
T Consensus 148 ~~~vLL-~GppGtGKT~la~aia~~----~~~~~~~v~~~~ 183 (389)
T 3vfd_A 148 ARGLLL-FGPPGNGKTMLAKAVAAE----SNATFFNISAAS 183 (389)
T ss_dssp CSEEEE-ESSTTSCHHHHHHHHHHH----TTCEEEEECSCC
T ss_pred CceEEE-ECCCCCCHHHHHHHHHHh----hcCcEEEeeHHH
Confidence 345555 577899999999888653 577888888754
No 364
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.65 E-value=0.49 Score=31.26 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=15.6
Q ss_pred eEEEEecCCCCCChhhHHHHHH
Q 030973 32 DVIAVASGKGGVGKSTTAVNLA 53 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA 53 (168)
+.|+++ +.+|+||||+...+.
T Consensus 2 ~ki~v~-G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 2 HKVVIV-GRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHH
T ss_pred CEEEEE-CCCCCCHHHHHHHHh
Confidence 346665 577999999987765
No 365
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=87.64 E-value=0.48 Score=34.26 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=30.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.+++.|+++.||.|+ .+|..|++ .|.+|++++-+...
T Consensus 7 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~~~ 43 (241)
T 1dhr_A 7 ARRVLVYGGRGALGS-----RCVQAFRA-RNWWVASIDVVENE 43 (241)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHT-TTCEEEEEESSCCT
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHh-CCCEEEEEeCChhh
Confidence 578999998888776 47788889 99999999987643
No 366
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=87.63 E-value=0.43 Score=34.54 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=31.7
Q ss_pred cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.....|+|.|+++.||.|+ .+|..|++ .|.+|++++-+.
T Consensus 10 ~~~~~k~vlVTGas~gIG~-----~~a~~l~~-~G~~V~~~~r~~ 48 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGS-----AIARLLHK-LGSKVIISGSNE 48 (249)
T ss_dssp CCCTTCEEEETTTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred ccCCCCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEcCCH
Confidence 3445789999999988776 57778888 999999998764
No 367
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=87.62 E-value=0.73 Score=34.46 Aligned_cols=37 Identities=16% Similarity=0.339 Sum_probs=30.9
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|++++-+..
T Consensus 46 ~gk~vlVTGas~GIG~-----aia~~la~-~G~~V~~~~r~~~ 82 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGR-----AVSIAFAK-EGANIAIAYLDEE 82 (291)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSCH
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCch
Confidence 4689999999888776 57788889 9999999998753
No 368
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=87.61 E-value=0.45 Score=34.12 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=29.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+|++.|+++.||.|+ .+|..|++ .|.+|++++-+.
T Consensus 2 ~k~vlITGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 36 (235)
T 3l77_A 2 MKVAVITGASRGIGE-----AIARALAR-DGYALALGARSV 36 (235)
T ss_dssp CCEEEEESCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 678999998888776 57788888 999999998764
No 369
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.59 E-value=0.3 Score=34.38 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=20.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeE
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKV 64 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rV 64 (168)
++-|.+ .+.+|+||||+|..|.. +|++.
T Consensus 16 G~gvli-~G~SGaGKStlal~L~~-----rG~~l 43 (181)
T 3tqf_A 16 KMGVLI-TGEANIGKSELSLALID-----RGHQL 43 (181)
T ss_dssp TEEEEE-EESSSSSHHHHHHHHHH-----TTCEE
T ss_pred CEEEEE-EcCCCCCHHHHHHHHHH-----cCCeE
Confidence 455555 67889999999877654 56653
No 370
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=87.59 E-value=0.43 Score=35.85 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=30.8
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 27 ~gk~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~~~~ 62 (299)
T 3t7c_A 27 EGKVAFITGAARGQGR-----SHAITLAR-EGADIIAIDVCK 62 (299)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEECCS
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeccc
Confidence 3689999999998886 57788999 999999999874
No 371
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=87.56 E-value=0.48 Score=34.09 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=30.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.+++.|+++.||.|+ .+|..|++ .|.+|++++-+...
T Consensus 3 ~k~vlITGas~gIG~-----~~a~~l~~-~G~~V~~~~r~~~~ 39 (236)
T 1ooe_A 3 SGKVIVYGGKGALGS-----AILEFFKK-NGYTVLNIDLSAND 39 (236)
T ss_dssp CEEEEEETTTSHHHH-----HHHHHHHH-TTEEEEEEESSCCT
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEecCccc
Confidence 578999998888776 57788899 99999999987643
No 372
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=87.51 E-value=0.66 Score=35.20 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=23.5
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
++.+..|+|||++|..+|.. .+.+.+.+++..
T Consensus 59 ll~G~~GtGKT~la~~ia~~----~~~~~~~~~~~~ 90 (338)
T 3pfi_A 59 LFSGPAGLGKTTLANIISYE----MSANIKTTAAPM 90 (338)
T ss_dssp EEECSTTSSHHHHHHHHHHH----TTCCEEEEEGGG
T ss_pred EEECcCCCCHHHHHHHHHHH----hCCCeEEecchh
Confidence 44678899999999888654 455677776643
No 373
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=87.45 E-value=0.52 Score=35.77 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=31.3
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|+++|.+...
T Consensus 45 ~gk~~lVTGas~GIG~-----aia~~la~-~G~~Vv~~~~~~~~ 82 (317)
T 3oec_A 45 QGKVAFITGAARGQGR-----THAVRLAQ-DGADIVAIDLCRQQ 82 (317)
T ss_dssp TTCEEEESSCSSHHHH-----HHHHHHHH-TTCEEEEEECCCCC
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHH-CCCeEEEEeccccc
Confidence 3689999999998876 57788889 99999999987543
No 374
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=87.45 E-value=0.46 Score=34.79 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=29.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.||.|+ ++|..|++ .|.+|+++|-+.
T Consensus 8 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 42 (259)
T 4e6p_A 8 GKSALITGSARGIGR-----AFAEAYVR-EGATVAIADIDI 42 (259)
T ss_dssp TCEEEEETCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 578999999888776 57788889 999999998765
No 375
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=87.42 E-value=0.43 Score=34.75 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=29.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.+|.|+ ++|..|++ .|.+|+++|-+.
T Consensus 2 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 36 (247)
T 3dii_A 2 NRGVIVTGGGHGIGK-----QICLDFLE-AGDKVCFIDIDE 36 (247)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 578999999988876 46788889 999999998765
No 376
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=87.38 E-value=0.47 Score=34.25 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=29.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.|++.|+++.||.|+ .+|..|++ .|.+|++++-+..
T Consensus 2 ~k~vlVTGas~giG~-----~~a~~l~~-~G~~V~~~~r~~~ 37 (239)
T 2ekp_A 2 ERKALVTGGSRGIGR-----AIAEALVA-RGYRVAIASRNPE 37 (239)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSCH
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCHH
Confidence 468999999988877 57788888 9999999987753
No 377
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.36 E-value=0.44 Score=31.47 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=15.5
Q ss_pred EEEEecCCCCCChhhHHHHHHH
Q 030973 33 VIAVASGKGGVGKSTTAVNLAV 54 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~ 54 (168)
.|++++ .+|+||||+...+..
T Consensus 5 ~i~v~G-~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVG-AGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEE-STTSSHHHHHHHHHH
T ss_pred EEEEEC-CCCCCHHHHHHHHHh
Confidence 355555 599999999877753
No 378
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.34 E-value=0.12 Score=38.13 Aligned_cols=26 Identities=27% Similarity=0.174 Sum_probs=20.3
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
.++.|+| -+..|+||||++..|+..+
T Consensus 23 ~~~~I~i-eG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISI-EGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEE-ECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEE-ECCCCCCHHHHHHHHHHhc
Confidence 3555555 6788999999999888766
No 379
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=87.30 E-value=0.42 Score=40.85 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=19.3
Q ss_pred EecCCCCCChhhHHHHHHHHHHH
Q 030973 36 VASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
+..+.+|+|||++|..+|..+..
T Consensus 205 LL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 205 VLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp EEESCTTTTTHHHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHHHHhc
Confidence 34678999999999999998843
No 380
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.28 E-value=0.69 Score=36.16 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=20.6
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
..|++ .+..|+||||++..||..+..
T Consensus 25 ~~i~l-~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 25 VCVIL-VGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp EEEEE-ECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEE-ECCCCCcHHHHHHHHHHHhCC
Confidence 34554 678999999999999987764
No 381
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=87.27 E-value=0.41 Score=33.89 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=20.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+.++++ .+..|+||||+...|+-.+
T Consensus 20 Gei~~l-~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVL-SGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEE-ECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHhhC
Confidence 567777 4678999999999888765
No 382
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}
Probab=87.26 E-value=0.4 Score=35.48 Aligned_cols=38 Identities=29% Similarity=0.447 Sum_probs=31.3
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+...
T Consensus 27 ~gk~vlVTGas~gIG~-----aia~~la~-~G~~V~~~~r~~~~ 64 (266)
T 3uxy_A 27 EGKVALVTGAAGGIGG-----AVVTALRA-AGARVAVADRAVAG 64 (266)
T ss_dssp TTCEEEESSTTSHHHH-----HHHHHHHH-TTCEEEECSSCCTT
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCHHH
Confidence 3689999999988776 57788899 99999999877643
No 383
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=87.23 E-value=0.8 Score=37.18 Aligned_cols=35 Identities=31% Similarity=0.270 Sum_probs=27.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCe-EEEEeC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLK-VGLLDA 69 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~r-VlliD~ 69 (168)
.++|+|++. -||||++.-++..|.. .|++ +.++-.
T Consensus 122 ~~~IaVTGT---nGKTTTt~ml~~iL~~-~g~~~~~~~gg 157 (494)
T 4hv4_A 122 RHGIAVAGT---HGKTTTTAMLSSIYAE-AGLDPTFVNGG 157 (494)
T ss_dssp SEEEEEECS---SSHHHHHHHHHHHHHH-TTCCCEEEEEE
T ss_pred CCEEEEecC---CChHHHHHHHHHHHHh-cCCCCEEEECC
Confidence 578988754 5899999999999999 8875 444443
No 384
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=87.20 E-value=0.59 Score=36.80 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=19.1
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQ 61 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g 61 (168)
..++-+--|+||||++..|+..|.. .|
T Consensus 51 fIt~EG~dGsGKTT~~~~Lae~L~~-~g 77 (376)
T 1of1_A 51 RVYIDGPHGMGKTTTTQLLVALGSR-DD 77 (376)
T ss_dssp EEEECSSTTSSHHHHHHHHHC-----CC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh-CC
Confidence 3444788899999999999999987 66
No 385
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.13 E-value=0.92 Score=38.67 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=27.5
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.+.+ .+..|+|||++|..+|..+ +.+.+.+|+...
T Consensus 490 ~~ll-~G~~GtGKT~la~~la~~l----~~~~~~i~~s~~ 524 (758)
T 1r6b_X 490 SFLF-AGPTGVGKTEVTVQLSKAL----GIELLRFDMSEY 524 (758)
T ss_dssp EEEE-ECSTTSSHHHHHHHHHHHH----TCEEEEEEGGGC
T ss_pred EEEE-ECCCCCcHHHHHHHHHHHh----cCCEEEEechhh
Confidence 4444 5778999999999999877 568888887653
No 386
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.13 E-value=0.88 Score=31.20 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=16.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLA 53 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA 53 (168)
...|+++ +..|+||||+...|.
T Consensus 23 ~~~i~v~-G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 23 LPEIALA-GRSNVGKSSFINSLI 44 (195)
T ss_dssp CCEEEEE-EBTTSSHHHHHHHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHh
Confidence 4455554 578999999988775
No 387
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=87.10 E-value=0.44 Score=34.87 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=30.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+..
T Consensus 7 ~k~vlVTGas~GIG~-----aia~~l~~-~G~~V~~~~r~~~ 42 (252)
T 3h7a_A 7 NATVAVIGAGDYIGA-----EIAKKFAA-EGFTVFAGRRNGE 42 (252)
T ss_dssp SCEEEEECCSSHHHH-----HHHHHHHH-TTCEEEEEESSGG
T ss_pred CCEEEEECCCchHHH-----HHHHHHHH-CCCEEEEEeCCHH
Confidence 688999999988776 57788889 9999999998753
No 388
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=87.09 E-value=0.34 Score=35.00 Aligned_cols=34 Identities=32% Similarity=0.359 Sum_probs=23.9
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+-.|+++ +.-|+||||++..|+ + .|.. +||+|.
T Consensus 8 ~~~~iglT-GgigsGKStv~~~l~----~-~g~~--vidaD~ 41 (210)
T 4i1u_A 8 HMYAIGLT-GGIGSGKTTVADLFA----A-RGAS--LVDTDL 41 (210)
T ss_dssp SCCEEEEE-CCTTSCHHHHHHHHH----H-TTCE--EEEHHH
T ss_pred ceeEEEEE-CCCCCCHHHHHHHHH----H-CCCc--EEECcH
Confidence 35567885 566899999987664 4 5655 567775
No 389
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=87.08 E-value=0.59 Score=34.43 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=30.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
.+++.|+++.||.|+. +|..|++ .|.+|++++-+...
T Consensus 8 ~k~vlVTGas~gIG~~-----ia~~l~~-~G~~V~~~~r~~~~ 44 (264)
T 2dtx_A 8 DKVVIVTGASMGIGRA-----IAERFVD-EGSKVIDLSIHDPG 44 (264)
T ss_dssp TCEEEEESCSSHHHHH-----HHHHHHH-TTCEEEEEESSCCC
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEecCccc
Confidence 5789999999988874 6788889 99999999887643
No 390
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Probab=87.08 E-value=0.54 Score=34.33 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=30.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.|++.|+++.||.|+ .+|..|++ .|.+|+++|-+..
T Consensus 6 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~~ 41 (256)
T 2d1y_A 6 GKGVLVTGGARGIGR-----AIAQAFAR-EGALVALCDLRPE 41 (256)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSTT
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEeCChh
Confidence 578999999888887 47788888 9999999987754
No 391
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=87.07 E-value=0.5 Score=34.61 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=29.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 8 gk~~lVTGas~gIG~-----a~a~~l~~-~G~~V~~~~r~~ 42 (255)
T 4eso_A 8 GKKAIVIGGTHGMGL-----ATVRRLVE-GGAEVLLTGRNE 42 (255)
T ss_dssp TCEEEEETCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 678999999998886 57788899 999999998764
No 392
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=87.01 E-value=0.36 Score=36.05 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=23.2
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
+++ .+.+|+||||++..+|..+ +...+.++..
T Consensus 47 vlL-~Gp~GtGKTtLakala~~~----~~~~i~i~g~ 78 (274)
T 2x8a_A 47 VLL-AGPPGCGKTLLAKAVANES----GLNFISVKGP 78 (274)
T ss_dssp EEE-ESSTTSCHHHHHHHHHHHT----TCEEEEEETT
T ss_pred EEE-ECCCCCcHHHHHHHHHHHc----CCCEEEEEcH
Confidence 444 5788999999999888743 4456666653
No 393
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.00 E-value=0.37 Score=36.81 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=19.5
Q ss_pred EEecCCCCCChhhHHHHHHHHHHH
Q 030973 35 AVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
.++.+..|+||||++..+|..+-.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 445778899999999999997643
No 394
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=87.00 E-value=0.47 Score=35.82 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=24.0
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
+.++.+..|+||||++..++.. .+ ++.+++..
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~----~~--~~~~~~~~ 64 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE----RP--GILIDCRE 64 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH----SS--EEEEEHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH----cC--cEEEEeec
Confidence 4555788999999999887654 33 88888753
No 395
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=86.94 E-value=0.38 Score=35.66 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=17.6
Q ss_pred EEEecCCCCCChhhHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~l 56 (168)
++ +.+..|+||||++..++..+
T Consensus 76 vl-l~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VL-LVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EE-EECCTTSSHHHHHHHHHHHT
T ss_pred EE-EECCCcChHHHHHHHHHHHc
Confidence 44 46788999999999988754
No 396
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=86.94 E-value=0.51 Score=35.02 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=30.4
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|++.|+++.+|.|+ ++|..|++ .|.+|+++|-+.
T Consensus 10 ~~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~ 45 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGK-----GVAAGLVA-AGASVMIVGRNP 45 (281)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 3689999999988876 57788889 999999998765
No 397
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.87 E-value=1.3 Score=43.88 Aligned_cols=46 Identities=17% Similarity=0.047 Sum_probs=37.7
Q ss_pred cCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973 38 SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID 83 (168)
Q Consensus 38 s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~ 83 (168)
-+..|+||||+-.-|+.++.+..|.++.....||-+-+...++|.-
T Consensus 912 VGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKait~~eLyG~~ 957 (3245)
T 3vkg_A 912 VGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSL 957 (3245)
T ss_dssp ECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTSCHHHHHEEE
T ss_pred ECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCCchhhhceee
Confidence 4677899999999999999884477888888888887777787743
No 398
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=86.85 E-value=0.46 Score=33.99 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=28.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+++.|+++.||.|+ .++..|++ .|.+|++++-+.
T Consensus 5 ~k~vlVtGasggiG~-----~~a~~l~~-~G~~V~~~~r~~ 39 (234)
T 2ehd_A 5 KGAVLITGASRGIGE-----ATARLLHA-KGYRVGLMARDE 39 (234)
T ss_dssp CCEEEESSTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence 578999998888775 57778888 999999998764
No 399
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=86.72 E-value=0.43 Score=35.51 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=29.8
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|++++-+.
T Consensus 11 ~~k~vlITGas~GIG~-----~~a~~L~~-~G~~V~~~~r~~ 46 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGF-----EICKQLSS-NGIMVVLTCRDV 46 (311)
T ss_dssp -CCEEEESSCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCcEEEEecCCchHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 3689999999998877 57788888 999999998765
No 400
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=86.71 E-value=0.56 Score=34.09 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=29.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.||.|+ .+|..|++ .|.+|+++|-+.
T Consensus 7 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 41 (249)
T 2ew8_A 7 DKLAVITGGANGIGR-----AIAERFAV-EGADIAIADLVP 41 (249)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSC
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEcCCc
Confidence 578999999888877 46778888 999999998875
No 401
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=86.71 E-value=0.34 Score=34.87 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=14.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHH-HHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLA-VAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA-~~l 56 (168)
+++|++ .+..|+||||++..|+ ..+
T Consensus 27 G~ii~l-~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVL-SSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEE-ECSCC----CHHHHHHC---
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHhcCC
Confidence 567776 5678999999999888 554
No 402
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=86.70 E-value=0.5 Score=36.52 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=19.1
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHhCC
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALASKCQ 61 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~~~g 61 (168)
..++-+--|+||||++..|+..|.. .|
T Consensus 6 fI~~EG~dGsGKTT~~~~La~~L~~-~g 32 (331)
T 1e2k_A 6 RVYIDGPHGMGKTTTTQLLVALGSR-DD 32 (331)
T ss_dssp EEEECSCTTSSHHHHHHHHTC-----CC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh-CC
Confidence 4445778899999999999999987 66
No 403
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=86.67 E-value=0.36 Score=33.20 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=15.9
Q ss_pred CeEEEEecCCCCCChhhHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVN 51 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~ 51 (168)
+.++++ -+..|+||||++..
T Consensus 9 gei~~l-~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVL-IGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEE-ECCTTSCHHHHHHH
T ss_pred CEEEEE-ECCCCCCHHHHHHH
Confidence 666766 56789999999885
No 404
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.66 E-value=0.46 Score=37.78 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=25.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
++-|.+ .+.+|+|||++|.++|..+ |...+.|++.
T Consensus 182 prGvLL-~GPPGTGKTllAkAiA~e~----~~~f~~v~~s 216 (405)
T 4b4t_J 182 PKGVIL-YGPPGTGKTLLARAVAHHT----DCKFIRVSGA 216 (405)
T ss_dssp CCCEEE-ESCSSSSHHHHHHHHHHHH----TCEEEEEEGG
T ss_pred CCceEE-eCCCCCCHHHHHHHHHHhh----CCCceEEEhH
Confidence 344555 5778999999999888755 5577777654
No 405
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=86.64 E-value=0.47 Score=35.43 Aligned_cols=35 Identities=31% Similarity=0.342 Sum_probs=25.2
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHhCCC--eEEEEeCC
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASKCQL--KVGLLDAD 70 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~--rVlliD~D 70 (168)
.++.+..|+|||+++..++..+.. .+. .++.+++.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~ 77 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNAS 77 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHT-TCHHHHCEEEETT
T ss_pred EEEECcCCcCHHHHHHHHHHHhcC-CcccCCeEEEeCc
Confidence 455678899999999999998854 332 35555554
No 406
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=86.62 E-value=0.43 Score=34.84 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=30.3
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..+++.|+++.+|.|+ .+|..|++ .|.+|++++-+.
T Consensus 6 ~~k~~lVTGas~GIG~-----aia~~l~~-~G~~V~~~~r~~ 41 (250)
T 3nyw_A 6 QKGLAIITGASQGIGA-----VIAAGLAT-DGYRVVLIARSK 41 (250)
T ss_dssp CCCEEEEESTTSHHHH-----HHHHHHHH-HTCEEEEEESCH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence 3689999999998886 57788888 899999998765
No 407
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=86.60 E-value=0.63 Score=33.86 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=30.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.+++.|+++.||.|+. +|..|++ .|.+|++++-+..
T Consensus 7 ~k~vlVTGas~giG~~-----ia~~l~~-~G~~V~~~~r~~~ 42 (250)
T 2fwm_X 7 GKNVWVTGAGKGIGYA-----TALAFVE-AGAKVTGFDQAFT 42 (250)
T ss_dssp TCEEEEESTTSHHHHH-----HHHHHHH-TTCEEEEEESCCC
T ss_pred CCEEEEeCCCcHHHHH-----HHHHHHH-CCCEEEEEeCchh
Confidence 5789999999988874 6788899 9999999987754
No 408
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=86.60 E-value=0.53 Score=34.94 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=30.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 11 ~k~~lVTGas~gIG~-----aia~~la~-~G~~V~~~~~~~ 45 (286)
T 3uve_A 11 GKVAFVTGAARGQGR-----SHAVRLAQ-EGADIIAVDICK 45 (286)
T ss_dssp TCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEECCS
T ss_pred CCEEEEeCCCchHHH-----HHHHHHHH-CCCeEEEEeccc
Confidence 689999999888776 57788999 999999999873
No 409
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=86.54 E-value=1.6 Score=33.61 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=28.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV 76 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l 76 (168)
||+|+++++ | .....+++.+.+ .|.+|+++|.|+..+..
T Consensus 1 MK~I~ilGg----g--~~g~~~~~~Ak~-~G~~vv~vd~~~~~~~~ 39 (363)
T 4ffl_A 1 MKTICLVGG----K--LQGFEAAYLSKK-AGMKVVLVDKNPQALIR 39 (363)
T ss_dssp CCEEEEECC----S--HHHHHHHHHHHH-TTCEEEEEESCTTCTTT
T ss_pred CCEEEEECC----C--HHHHHHHHHHHH-CCCEEEEEeCCCCChhH
Confidence 577888753 2 345567777777 99999999999877553
No 410
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=86.49 E-value=0.45 Score=35.29 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=30.2
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|++++.+.
T Consensus 30 ~gk~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~~~~ 65 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGA-----AIAKRLAL-EGAAVALTYVNA 65 (271)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSC
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCC
Confidence 4689999999988776 57888999 999999997654
No 411
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.48 E-value=0.48 Score=38.02 Aligned_cols=35 Identities=23% Similarity=0.118 Sum_probs=25.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
++-|.+ .+.+|+|||++|.++|..+ |...+.|++.
T Consensus 215 prGvLL-yGPPGTGKTllAkAiA~e~----~~~f~~v~~s 249 (434)
T 4b4t_M 215 PKGALM-YGPPGTGKTLLARACAAQT----NATFLKLAAP 249 (434)
T ss_dssp CCEEEE-ESCTTSSHHHHHHHHHHHH----TCEEEEEEGG
T ss_pred CCeeEE-ECcCCCCHHHHHHHHHHHh----CCCEEEEehh
Confidence 455666 4778999999999888755 5567777653
No 412
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=86.47 E-value=0.78 Score=33.68 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=29.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 11 ~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~ 45 (264)
T 3ucx_A 11 DKVVVISGVGPALGT-----TLARRCAE-QGADLVLAARTV 45 (264)
T ss_dssp TCEEEEESCCTTHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CcEEEEECCCcHHHH-----HHHHHHHH-CcCEEEEEeCCH
Confidence 689999999999876 56788888 999999998764
No 413
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Probab=86.45 E-value=0.76 Score=33.46 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=28.5
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
|++.|+++.||.|+. +|..|++ .|.+|++++-+.
T Consensus 1 k~vlVTGas~gIG~a-----ia~~l~~-~G~~V~~~~r~~ 34 (248)
T 3asu_A 1 MIVLVTGATAGFGEC-----ITRRFIQ-QGHKVIATGRRQ 34 (248)
T ss_dssp CEEEETTTTSTTHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred CEEEEECCCChHHHH-----HHHHHHH-CCCEEEEEeCCH
Confidence 468899999999974 6788888 999999998764
No 414
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=86.43 E-value=0.55 Score=33.80 Aligned_cols=36 Identities=28% Similarity=0.303 Sum_probs=28.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
|++|.|+++.||.|+. ++..|++ .|.+|.+++-+..
T Consensus 1 Mk~vlVtGasg~iG~~-----l~~~L~~-~g~~V~~~~r~~~ 36 (255)
T 2dkn_A 1 MSVIAITGSASGIGAA-----LKELLAR-AGHTVIGIDRGQA 36 (255)
T ss_dssp -CEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESSSS
T ss_pred CcEEEEeCCCcHHHHH-----HHHHHHh-CCCEEEEEeCChh
Confidence 4678999888887764 6677888 8999999987753
No 415
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=86.41 E-value=0.6 Score=34.53 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=30.3
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 29 ~~k~vlVTGas~GIG~-----aia~~l~~-~G~~Vi~~~r~~ 64 (281)
T 3ppi_A 29 EGASAIVSGGAGGLGE-----ATVRRLHA-DGLGVVIADLAA 64 (281)
T ss_dssp TTEEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEeCCh
Confidence 3689999999988776 47788888 999999998765
No 416
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=86.40 E-value=0.8 Score=33.42 Aligned_cols=38 Identities=8% Similarity=-0.157 Sum_probs=30.8
Q ss_pred cCCCCeEEEEecCC--CCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 27 IDGVKDVIAVASGK--GGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 27 ~~~~~~vI~v~s~k--gG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
.....|++.|+++. +|.|+ .+|..|++ .|.+|++++-+
T Consensus 10 ~~~~~k~vlITGa~~~~giG~-----~ia~~l~~-~G~~V~~~~r~ 49 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAY-----GIAKACKR-EGAELAFTYVG 49 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHH-----HHHHHHHH-TTCEEEEEESS
T ss_pred cccCCCEEEEeCCCCCCcHHH-----HHHHHHHH-cCCCEEEEecc
Confidence 34457899999877 78776 57788899 99999999876
No 417
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=86.40 E-value=3.8 Score=33.63 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=18.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVA 55 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~ 55 (168)
.+.|+++ +..|+||||++-.|...
T Consensus 13 ~~~I~Ii-G~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 13 RRTFAII-SHPDAGKTTITEKVLLF 36 (529)
T ss_dssp EEEEEEE-ECTTSSHHHHHHHHHHS
T ss_pred CCEEEEE-CCCCChHHHHHHHHHhh
Confidence 4556664 57899999999988753
No 418
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=86.35 E-value=0.55 Score=34.80 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=30.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.+|.|+. +|..|++ .|.+|+++|-+.
T Consensus 7 gKvalVTGas~GIG~a-----iA~~la~-~Ga~Vv~~~~~~ 41 (254)
T 4fn4_A 7 NKVVIVTGAGSGIGRA-----IAKKFAL-NDSIVVAVELLE 41 (254)
T ss_dssp TCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHH-cCCEEEEEECCH
Confidence 7899999999998876 6778888 999999999875
No 419
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=86.34 E-value=0.57 Score=33.87 Aligned_cols=35 Identities=29% Similarity=0.221 Sum_probs=29.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.+|.|+ .+|..|++ .|.+|++++-+.
T Consensus 5 ~k~vlITGas~gIG~-----~~a~~l~~-~G~~v~~~~r~~ 39 (247)
T 3lyl_A 5 EKVALVTGASRGIGF-----EVAHALAS-KGATVVGTATSQ 39 (247)
T ss_dssp TCEEEESSCSSHHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred CCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 678999998888776 57888899 999999998765
No 420
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=86.33 E-value=0.57 Score=34.85 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=28.6
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|+++|.
T Consensus 28 ~~k~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~~ 61 (280)
T 4da9_A 28 ARPVAIVTGGRRGIGL-----GIARALAA-SGFDIAITGI 61 (280)
T ss_dssp CCCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEES
T ss_pred CCCEEEEecCCCHHHH-----HHHHHHHH-CCCeEEEEeC
Confidence 3689999999988776 46778888 9999999986
No 421
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=86.24 E-value=0.79 Score=33.87 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=31.2
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|++++-+..
T Consensus 5 ~~k~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~r~~~ 41 (274)
T 3e03_A 5 SGKTLFITGASRGIGL-----AIALRAAR-DGANVAIAAKSAV 41 (274)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCCS
T ss_pred CCcEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEeccch
Confidence 3689999999988876 56788899 9999999998764
No 422
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Probab=86.23 E-value=0.75 Score=33.94 Aligned_cols=35 Identities=3% Similarity=-0.094 Sum_probs=29.4
Q ss_pred CeEEEEecCC--CCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGK--GGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~k--gG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++. ||.|+ .+|..|++ .|.+|++++-+.
T Consensus 6 ~k~vlVTGas~~~gIG~-----~~a~~l~~-~G~~V~~~~r~~ 42 (275)
T 2pd4_A 6 GKKGLIVGVANNKSIAY-----GIAQSCFN-QGATLAFTYLNE 42 (275)
T ss_dssp TCEEEEECCCSTTSHHH-----HHHHHHHT-TTCEEEEEESST
T ss_pred CCEEEEECCCCCCcHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 5789999887 88776 57788999 999999998775
No 423
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=86.19 E-value=0.51 Score=34.94 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=29.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.+|.|+ .+|..|++ .|.+|++++-+.
T Consensus 4 ~k~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~r~~ 38 (264)
T 3tfo_A 4 DKVILITGASGGIGE-----GIARELGV-AGAKILLGARRQ 38 (264)
T ss_dssp TCEEEESSTTSHHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred CCEEEEeCCccHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence 578999999988886 46788888 999999998764
No 424
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=86.13 E-value=0.6 Score=33.74 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=29.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+++.|+++.||.|+ ++|..|++ .|.+|++++-+.
T Consensus 11 ~k~vlITGasggiG~-----~la~~l~~-~G~~V~~~~r~~ 45 (254)
T 2wsb_A 11 GACAAVTGAGSGIGL-----EICRAFAA-SGARLILIDREA 45 (254)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 578999998888776 57788888 999999998764
No 425
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=86.13 E-value=0.6 Score=34.14 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=29.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.||.|+ .+|..|++ .|.+|++++-+.
T Consensus 9 ~k~vlVTGas~giG~-----~ia~~l~~-~G~~V~~~~r~~ 43 (260)
T 2ae2_A 9 GCTALVTGGSRGIGY-----GIVEELAS-LGASVYTCSRNQ 43 (260)
T ss_dssp TCEEEEESCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 578999999988887 56778888 899999998764
No 426
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=86.10 E-value=0.52 Score=36.15 Aligned_cols=35 Identities=34% Similarity=0.466 Sum_probs=26.6
Q ss_pred CeEEEEec-CCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 31 KDVIAVAS-GKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 31 ~~vI~v~s-~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
.+||+|=+ .-||+|||-++..|+..|. ++++.+|.
T Consensus 36 vPVI~VGNitvGGTGKTP~vi~L~~~L~---~~~~~ils 71 (315)
T 4ehx_A 36 VPVISVGNLSVGGSGKTSFVMYLADLLK---DKRVCILS 71 (315)
T ss_dssp SCEEEEEESBSSCCSHHHHHHHHHHHTT---TSCEEEEE
T ss_pred CCEEEECCEEeCCCChHHHHHHHHHHHh---hcCceEEe
Confidence 67888744 3699999999999999884 34555553
No 427
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=86.04 E-value=0.94 Score=38.61 Aligned_cols=33 Identities=30% Similarity=0.392 Sum_probs=25.3
Q ss_pred EecCCCCCChhhHHHHHHHHHHHhC-------CCeEEEEeC
Q 030973 36 VASGKGGVGKSTTAVNLAVALASKC-------QLKVGLLDA 69 (168)
Q Consensus 36 v~s~kgG~GKTt~a~~LA~~la~~~-------g~rVlliD~ 69 (168)
++.+..|+|||+++..+|..+.. . +.+++.+|+
T Consensus 211 lL~G~~GtGKT~la~~la~~l~~-~~v~~~~~~~~~~~~~~ 250 (758)
T 1r6b_X 211 LLVGESGVGKTAIAEGLAWRIVQ-GDVPEVMADCTIYSLDI 250 (758)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHH-TCSCGGGTTCEEEECCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHHh-CCCChhhcCCEEEEEcH
Confidence 45788999999999999998865 3 455555554
No 428
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=86.03 E-value=1.6 Score=32.75 Aligned_cols=42 Identities=33% Similarity=0.496 Sum_probs=37.6
Q ss_pred CeEEEEecC-CCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973 31 KDVIAVASG-KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (168)
Q Consensus 31 ~~vI~v~s~-kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~ 73 (168)
+|-|.|+++ -+|.||-.+|+.+|..|.. +|.||-++-+||.-
T Consensus 23 ~KyIfVTGGVvS~lGKGi~aaSlg~lLk~-~G~~Vt~~K~DPYl 65 (295)
T 2vo1_A 23 MKYILVTGGVISGIGKGIIASSVGTILKS-CGLHVTSIKIDPYI 65 (295)
T ss_dssp CEEEEEEECSSSSSSHHHHHHHHHHHHHH-TTCCEEEEEEECSS
T ss_pred ceEEEEcCCcccccccHHHHHHHHHHHHH-CCCcceeeecccce
Confidence 788888764 6899999999999999999 99999999999954
No 429
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=86.03 E-value=3 Score=29.45 Aligned_cols=117 Identities=18% Similarity=0.220 Sum_probs=67.7
Q ss_pred CeEEEEecCCCCCChhhH-HHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC---CCCccc----cCceeecccCCe
Q 030973 31 KDVIAVASGKGGVGKSTT-AVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ---KPEVTK----DMKMVPIENYGV 102 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~-a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~---~~~~~~----~~~~~~~~~~~~ 102 (168)
.+.+.++++-||++|++. ...|+....+ .|++|.++--|... ...++-.. ...+.. .... +.....+
T Consensus 50 ~~~~~iv~g~ggs~~~~~~~a~L~~~a~~-~Gr~V~vLAp~~~s---~~~l~~~~~l~~~t~t~~~ll~~~~-~~tp~s~ 124 (189)
T 2l8b_A 50 RPSLAIVSGQGGAAGQRERVAELVMMARE-QGREVQIIAADRRS---QMNMKQDERLSGELITGRRQLLEGM-AFTPGST 124 (189)
T ss_dssp SCCEECCBCSSCSHHHHHHHHHHHHHHHH-TTCCEEEECSTTHH---HHHHSCTTTCSSCSSSTTTTTTTSC-CCCCCCE
T ss_pred CCceEEEecccchHHHHHHHHHHHHHHHh-cCeEEEEEcCchHH---HHHHHhhcCcCcceeehhhhhcCCC-CCCCCCE
Confidence 556888899999999977 6667776667 99999999877532 11111110 000000 0000 0011222
Q ss_pred eeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC-HHHHHHHhhccc
Q 030973 103 KCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG-DAQLTTTQTLQL 164 (168)
Q Consensus 103 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~-~~~~~~~~~~~~ 164 (168)
.++.. .+......+..+++..+..+--+|++|.....+ -..+.+++.-++
T Consensus 125 lIVD~------------AekLS~kE~~~Lld~A~~~naqvvll~~~~RqG~GnAl~vl~~agv 175 (189)
T 2l8b_A 125 VIVDQ------------GEKLSLKETLTLLDGAARHNVQVLITDSGQRTGTGSALMAMKDAGV 175 (189)
T ss_dssp EEEEE------------SSSHHHHHHHHHHHHHHHTTCCEEEEESSTTTCSHHHHHHHHHTTC
T ss_pred EEEec------------hhhcCHHHHHHHHHHHHhcCCEEEEeCCcccccCCCHHHHHHhCCC
Confidence 23321 234566777888887776778999999997432 345555555443
No 430
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=86.01 E-value=0.69 Score=33.67 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=30.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.+++.|+++.||.|+ .+|..|++ .|.+|++++-+..
T Consensus 12 ~k~vlVTGasggiG~-----~~a~~l~~-~G~~V~~~~r~~~ 47 (265)
T 2o23_A 12 GLVAVITGGASGLGL-----ATAERLVG-QGASAVLLDLPNS 47 (265)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEECTTS
T ss_pred CCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEeCCcH
Confidence 578999998888776 57788888 9999999998763
No 431
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=85.92 E-value=0.63 Score=33.56 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=28.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+++.|+++.||.|+ .+|..|++ .|.+|++++-+.
T Consensus 2 ~k~vlItGasggiG~-----~~a~~l~~-~G~~V~~~~r~~ 36 (250)
T 2cfc_A 2 SRVAIVTGASSGNGL-----AIATRFLA-RGDRVAALDLSA 36 (250)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEeCCCchHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 468899998888776 56778888 999999998764
No 432
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=85.87 E-value=0.73 Score=33.72 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=29.0
Q ss_pred CCeEEEEecCCC-CCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKG-GVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kg-G~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|++.|+++.| |.|+ .+|..|++ .|.+|+++|-+.
T Consensus 21 ~~k~vlITGasg~GIG~-----~~a~~l~~-~G~~V~~~~r~~ 57 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGS-----TTARRALL-EGADVVISDYHE 57 (266)
T ss_dssp TTCEEEESSCSSSSHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCCEEEEECCCCCchHH-----HHHHHHHH-CCCEEEEecCCH
Confidence 367899988765 7776 67788899 999999998765
No 433
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}
Probab=85.87 E-value=0.88 Score=33.72 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=29.5
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
|++.|+++.||.|+. +|..|++ .|.+|++++-+.
T Consensus 22 k~vlVTGas~gIG~a-----ia~~La~-~G~~V~~~~r~~ 55 (272)
T 2nwq_A 22 STLFITGATSGFGEA-----CARRFAE-AGWSLVLTGRRE 55 (272)
T ss_dssp CEEEESSTTTSSHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred cEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence 789999999999985 6778888 999999998764
No 434
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=85.86 E-value=0.63 Score=34.10 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=29.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.||.|+ .+|..|++ .|.+|++++-+.
T Consensus 7 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 41 (262)
T 1zem_A 7 GKVCLVTGAGGNIGL-----ATALRLAE-EGTAIALLDMNR 41 (262)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 578999999998887 47788889 999999998764
No 435
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=85.86 E-value=0.63 Score=34.68 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=31.5
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|++++-+..
T Consensus 8 ~~k~vlVTGas~GIG~-----aia~~l~~-~G~~V~~~~r~~~ 44 (285)
T 3sc4_A 8 RGKTMFISGGSRGIGL-----AIAKRVAA-DGANVALVAKSAE 44 (285)
T ss_dssp TTCEEEEESCSSHHHH-----HHHHHHHT-TTCEEEEEESCCS
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEECChh
Confidence 3689999999988776 57888999 9999999998864
No 436
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=85.85 E-value=0.54 Score=34.23 Aligned_cols=35 Identities=29% Similarity=0.227 Sum_probs=29.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 9 gk~~lVTGas~gIG~-----a~a~~l~~-~G~~V~~~~r~~ 43 (248)
T 3op4_A 9 GKVALVTGASRGIGK-----AIAELLAE-RGAKVIGTATSE 43 (248)
T ss_dssp TCEEEESSCSSHHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 689999998888776 57788899 999999998764
No 437
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=85.85 E-value=0.5 Score=35.55 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=30.9
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+..
T Consensus 40 ~~k~vlVTGas~GIG~-----aia~~la~-~G~~V~~~~r~~~ 76 (293)
T 3rih_A 40 SARSVLVTGGTKGIGR-----GIATVFAR-AGANVAVAARSPR 76 (293)
T ss_dssp TTCEEEETTTTSHHHH-----HHHHHHHH-TTCEEEEEESSGG
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEECCHH
Confidence 4689999999888777 46788889 9999999997753
No 438
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}
Probab=85.79 E-value=0.64 Score=34.02 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=29.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+++.|+++.||.|+ ++|..|++ .|.+|+++|-+.
T Consensus 12 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 46 (263)
T 3ak4_A 12 GRKAIVTGGSKGIGA-----AIARALDK-AGATVAIADLDV 46 (263)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEeCCCChHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 578999999988877 46778888 999999998764
No 439
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=85.76 E-value=0.51 Score=34.89 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=29.7
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
++++.|+++.||.|+ ++|..|++ .|.+|++++-+.
T Consensus 5 ~k~vlVTGas~gIG~-----~~a~~l~~-~G~~V~~~~r~~ 39 (281)
T 3m1a_A 5 AKVWLVTGASSGFGR-----AIAEAAVA-AGDTVIGTARRT 39 (281)
T ss_dssp CCEEEETTTTSHHHH-----HHHHHHHH-TTCEEEEEESSG
T ss_pred CcEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 678999998888777 57788888 999999998765
No 440
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=85.74 E-value=0.7 Score=35.24 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+.+++++ +..|+||||++..|+..+
T Consensus 126 Ge~vaIv-GpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFI-GPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEE-CSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEE-CCCCCcHHHHHHHHhhhc
Confidence 6778875 566999999999999887
No 441
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=85.69 E-value=0.43 Score=35.37 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=30.2
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 25 ~gk~~lVTGas~gIG~-----aia~~la~-~G~~V~~~~r~~ 60 (271)
T 4ibo_A 25 GGRTALVTGSSRGLGR-----AMAEGLAV-AGARILINGTDP 60 (271)
T ss_dssp TTCEEEETTCSSHHHH-----HHHHHHHH-TTCEEEECCSCH
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 3689999999988876 57788899 999999988764
No 442
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=85.66 E-value=0.84 Score=34.67 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=29.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+++.|+++.||.|+ .+|..|++ .|.+|++++-+.
T Consensus 8 ~k~vlVTGas~gIG~-----~la~~l~~-~G~~Vv~~~r~~ 42 (319)
T 3ioy_A 8 GRTAFVTGGANGVGI-----GLVRQLLN-QGCKVAIADIRQ 42 (319)
T ss_dssp TCEEEEETTTSTHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEcCCchHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence 678999999998776 57788888 999999998765
No 443
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}
Probab=85.65 E-value=0.57 Score=34.25 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=29.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.||.|+ .+|..|++ .|.+|++++-+.
T Consensus 5 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 39 (260)
T 2qq5_A 5 GQVCVVTGASRGIGR-----GIALQLCK-AGATVYITGRHL 39 (260)
T ss_dssp TCEEEESSTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEeCCCchHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 578999998888877 56788888 999999998764
No 444
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=85.63 E-value=0.65 Score=34.23 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=29.7
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|++.|+++.||.|+ .+|..|++ .|.+|++++-+.
T Consensus 20 ~~k~~lVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 55 (267)
T 1vl8_A 20 RGRVALVTGGSRGLGF-----GIAQGLAE-AGCSVVVASRNL 55 (267)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 4689999999988776 56778888 999999998764
No 445
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2
Probab=85.63 E-value=0.56 Score=34.23 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=30.7
Q ss_pred CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCC---CeEEEEeCCCC
Q 030973 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQ---LKVGLLDADVY 72 (168)
Q Consensus 28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g---~rVlliD~D~~ 72 (168)
.-.++++.|+++.||.|+ .+|..|++ .| .+|++++-+..
T Consensus 18 ~~~~k~vlITGasggIG~-----~la~~L~~-~G~~~~~V~~~~r~~~ 59 (267)
T 1sny_A 18 GSHMNSILITGCNRGLGL-----GLVKALLN-LPQPPQHLFTTCRNRE 59 (267)
T ss_dssp --CCSEEEESCCSSHHHH-----HHHHHHHT-SSSCCSEEEEEESCTT
T ss_pred CCCCCEEEEECCCCcHHH-----HHHHHHHh-cCCCCcEEEEEecChh
Confidence 344778999998888775 67788888 89 99999998764
No 446
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}
Probab=85.60 E-value=0.77 Score=33.62 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=30.7
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
..|++.|+++.||.|+. +|..|++ .|.+|++++-+..
T Consensus 20 ~~k~vlVTGas~gIG~a-----ia~~l~~-~G~~V~~~~r~~~ 56 (253)
T 2nm0_A 20 MSRSVLVTGGNRGIGLA-----IARAFAD-AGDKVAITYRSGE 56 (253)
T ss_dssp CCCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESSSC
T ss_pred CCCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEeCChH
Confidence 36789999999988874 6778888 9999999987754
No 447
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=85.50 E-value=1.5 Score=33.92 Aligned_cols=37 Identities=11% Similarity=0.123 Sum_probs=28.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~ 69 (168)
|..|.|++. +|-|=-+-+..||..|.+ +|++|.++-.
T Consensus 20 m~rIl~~~~-~~~GHv~p~l~La~~L~~-~Gh~V~v~~~ 56 (415)
T 3rsc_A 20 MAHLLIVNV-ASHGLILPTLTVVTELVR-RGHRVSYVTA 56 (415)
T ss_dssp CCEEEEECC-SCHHHHGGGHHHHHHHHH-TTCEEEEEEC
T ss_pred CCEEEEEeC-CCccccccHHHHHHHHHH-CCCEEEEEeC
Confidence 334555443 677888888999999999 9999999874
No 448
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=85.50 E-value=0.67 Score=34.02 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=29.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.||.|+ .+|..|++ .|.+|++++-+.
T Consensus 13 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 47 (267)
T 1iy8_A 13 DRVVLITGGGSGLGR-----ATAVRLAA-EGAKLSLVDVSS 47 (267)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 678999999988887 46788888 999999998764
No 449
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=85.49 E-value=0.51 Score=34.48 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=20.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALA 57 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la 57 (168)
+.+++++ +..|+||||+...++-.+.
T Consensus 31 Ge~~~i~-G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 31 GALVAVV-GQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TCEEEEE-CSTTSSHHHHHHHHTTCSE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhcCCC
Confidence 6778875 5669999999888776553
No 450
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=85.46 E-value=0.56 Score=34.92 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=28.9
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
.|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+
T Consensus 25 ~k~~lVTGas~GIG~-----~ia~~la~-~G~~V~~~~r~ 58 (281)
T 3v2h_A 25 TKTAVITGSTSGIGL-----AIARTLAK-AGANIVLNGFG 58 (281)
T ss_dssp TCEEEEETCSSHHHH-----HHHHHHHH-TTCEEEEECCC
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCC
Confidence 689999999988776 57788889 99999999873
No 451
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=85.45 E-value=0.58 Score=34.25 Aligned_cols=34 Identities=29% Similarity=0.309 Sum_probs=24.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEE
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL 66 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVll 66 (168)
+.+++++ +..|+||||+...++-.+.- ..-+|.+
T Consensus 28 Ge~~~i~-G~nGsGKSTLl~~l~Gl~~p-~~G~i~~ 61 (243)
T 1mv5_A 28 NSIIAFA-GPSGGGKSTIFSLLERFYQP-TAGEITI 61 (243)
T ss_dssp TEEEEEE-CCTTSSHHHHHHHHTTSSCC-SBSCEEE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhcCCCC-CCcEEEE
Confidence 7778775 67799999999888876544 3345554
No 452
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=85.44 E-value=0.56 Score=34.47 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=30.0
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 9 ~~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~ 44 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIGR-----GIATVFAR-AGANVAVAGRST 44 (262)
T ss_dssp TTCEEEETTCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 3689999998888777 46778888 999999998765
No 453
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=85.38 E-value=0.68 Score=33.94 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=29.6
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..+++.|+++.||.|+ ++|..|++ .|.+|++++-+.
T Consensus 15 ~~k~vlITGasggiG~-----~~a~~l~~-~G~~V~~~~r~~ 50 (278)
T 2bgk_A 15 QDKVAIITGGAGGIGE-----TTAKLFVR-YGAKVVIADIAD 50 (278)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred cCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEcCCh
Confidence 3678999999988777 57778888 999999997654
No 454
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}
Probab=85.36 E-value=0.68 Score=33.69 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=29.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+++.|+++.||.|+ ++|..|++ .|.+|++++-+.
T Consensus 7 ~k~vlITGasggiG~-----~la~~l~~-~G~~V~~~~r~~ 41 (264)
T 2pd6_A 7 SALALVTGAGSGIGR-----AVSVRLAG-EGATVAACDLDR 41 (264)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred CCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEeCCh
Confidence 578999999888776 57788888 999999998764
No 455
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2
Probab=85.32 E-value=0.69 Score=34.16 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=29.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.||.|+ .+|..|++ .|.+|+++|-+.
T Consensus 9 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 43 (270)
T 1yde_A 9 GKVVVVTGGGRGIGA-----GIVRAFVN-SGARVVICDKDE 43 (270)
T ss_dssp TCEEEEETCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 578999999888876 56778888 999999998764
No 456
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=85.29 E-value=0.56 Score=34.74 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=30.2
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|++++-+.
T Consensus 27 ~~k~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~r~~ 62 (270)
T 3ftp_A 27 DKQVAIVTGASRGIGR-----AIALELAR-RGAMVIGTATTE 62 (270)
T ss_dssp TTCEEEETTCSSHHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 3689999999988876 57788899 999999998765
No 457
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=85.28 E-value=0.53 Score=34.34 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=23.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEE
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL 66 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVll 66 (168)
+.+++++ +..|+||||+...++-.+.- ..-+|.+
T Consensus 31 Ge~~~ii-G~nGsGKSTLl~~l~Gl~~p-~~G~I~~ 64 (235)
T 3tif_A 31 GEFVSIM-GPSGSGKSTMLNIIGCLDKP-TEGEVYI 64 (235)
T ss_dssp TCEEEEE-CSTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CCEEEEE-CCCCCcHHHHHHHHhcCCCC-CceEEEE
Confidence 6778885 57799999998887765543 2234444
No 458
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=85.27 E-value=0.6 Score=34.12 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=29.7
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+|++.|+++.+|.|+ .+|..|++ .|.+|++++-+.
T Consensus 6 ~~k~vlVTGas~gIG~-----~~a~~l~~-~G~~v~~~~~~~ 41 (264)
T 3i4f_A 6 FVRHALITAGTKGLGK-----QVTEKLLA-KGYSVTVTYHSD 41 (264)
T ss_dssp CCCEEEETTTTSHHHH-----HHHHHHHH-TTCEEEEEESSC
T ss_pred ccCEEEEeCCCchhHH-----HHHHHHHH-CCCEEEEEcCCC
Confidence 4689999998888776 57788889 999999997654
No 459
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=85.27 E-value=0.54 Score=34.77 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=28.3
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|++++..
T Consensus 26 ~~k~~lVTGas~GIG~-----aia~~la~-~G~~Vv~~~~~ 60 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGA-----AIAARLAS-DGFTVVINYAG 60 (267)
T ss_dssp -CCEEEEESCSSHHHH-----HHHHHHHH-HTCEEEEEESS
T ss_pred CCCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEcCC
Confidence 3689999999998887 57778888 89999988654
No 460
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=85.23 E-value=0.83 Score=30.74 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=20.4
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
+.++.+..|+||||+.-++.+.|..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5566778999999999999887743
No 461
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=85.23 E-value=0.69 Score=33.76 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=29.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+++.|+++.||.|+ .+|..|++ .|.+|++++-+.
T Consensus 5 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 39 (254)
T 1hdc_A 5 GKTVIITGGARGLGA-----EAARQAVA-AGARVVLADVLD 39 (254)
T ss_dssp CSEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 578999999888877 46778888 999999998764
No 462
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.22 E-value=0.61 Score=37.76 Aligned_cols=35 Identities=20% Similarity=0.118 Sum_probs=25.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
++-|.+ .+.+|+|||++|.++|..+ |...+.|++.
T Consensus 243 prGILL-yGPPGTGKTlLAkAiA~e~----~~~fi~vs~s 277 (467)
T 4b4t_H 243 PKGILL-YGPPGTGKTLCARAVANRT----DATFIRVIGS 277 (467)
T ss_dssp CSEEEE-CSCTTSSHHHHHHHHHHHH----TCEEEEEEGG
T ss_pred CCceEe-eCCCCCcHHHHHHHHHhcc----CCCeEEEEhH
Confidence 455666 5778999999999888755 4566666653
No 463
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=85.21 E-value=0.71 Score=33.48 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=29.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+++.|+++.||.|+ ++|..|++ .|.+|+++|-+.
T Consensus 13 ~k~vlItGasggiG~-----~la~~l~~-~G~~V~~~~r~~ 47 (260)
T 3awd_A 13 NRVAIVTGGAQNIGL-----ACVTALAE-AGARVIIADLDE 47 (260)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEeCCCchHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 678999998888775 57788888 899999998764
No 464
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=85.20 E-value=0.49 Score=38.02 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=18.6
Q ss_pred eEEEEecCCCCCChhhHHHHHHHHH
Q 030973 32 DVIAVASGKGGVGKSTTAVNLAVAL 56 (168)
Q Consensus 32 ~vI~v~s~kgG~GKTt~a~~LA~~l 56 (168)
+.+.+ .+..|+||||+|..+|..+
T Consensus 51 ~~vLL-~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMIL-WGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEE-ECSTTSSHHHHHHHHHHHT
T ss_pred cEEEE-ECCCCCcHHHHHHHHHHHh
Confidence 34544 5788999999999988764
No 465
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Probab=85.16 E-value=0.66 Score=33.82 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=29.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.|++.|+++.||.|+ .+|..|++ .|.+|++++-+..
T Consensus 4 ~k~vlVTGas~giG~-----~ia~~l~~-~G~~V~~~~r~~~ 39 (255)
T 2q2v_A 4 GKTALVTGSTSGIGL-----GIAQVLAR-AGANIVLNGFGDP 39 (255)
T ss_dssp TCEEEESSCSSHHHH-----HHHHHHHH-TTCEEEEECSSCC
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCch
Confidence 578999998888777 57788888 9999999987653
No 466
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=85.11 E-value=0.57 Score=33.50 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=29.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
.+++.|+++.||.|+ .++..|++ .|.+|++++-+..
T Consensus 2 ~k~vlVtGasggiG~-----~la~~l~~-~G~~V~~~~r~~~ 37 (242)
T 1uay_A 2 ERSALVTGGASGLGR-----AAALALKA-RGYRVVVLDLRRE 37 (242)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHH-HTCEEEEEESSCC
T ss_pred CCEEEEeCCCChHHH-----HHHHHHHH-CCCEEEEEccCcc
Confidence 468899998888775 56778888 8999999998764
No 467
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=85.09 E-value=0.61 Score=34.50 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=29.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.+|.|+. +|..|++ .|.+|+++|-+.
T Consensus 11 ~k~~lVTGas~GIG~a-----~a~~la~-~G~~V~~~~r~~ 45 (277)
T 3tsc_A 11 GRVAFITGAARGQGRA-----HAVRMAA-EGADIIAVDIAG 45 (277)
T ss_dssp TCEEEEESTTSHHHHH-----HHHHHHH-TTCEEEEEECCS
T ss_pred CCEEEEECCccHHHHH-----HHHHHHH-cCCEEEEEeccc
Confidence 6899999999988864 6788889 999999998753
No 468
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=85.08 E-value=0.72 Score=31.57 Aligned_cols=21 Identities=43% Similarity=0.713 Sum_probs=16.0
Q ss_pred EEEEecCCCCCChhhHHHHHHH
Q 030973 33 VIAVASGKGGVGKSTTAVNLAV 54 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~ 54 (168)
.|+++ +.+|+||||+...|..
T Consensus 23 ki~vv-G~~~~GKSsli~~l~~ 43 (190)
T 3con_A 23 KLVVV-GAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHH
T ss_pred EEEEE-CcCCCCHHHHHHHHHc
Confidence 34554 5699999999988864
No 469
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=85.06 E-value=0.46 Score=33.30 Aligned_cols=33 Identities=30% Similarity=0.211 Sum_probs=23.8
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHh-----CCCeEEEE
Q 030973 35 AVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLL 67 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la~~-----~g~rVlli 67 (168)
+++...-|+|||.++...+..+... .+.+++++
T Consensus 51 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil 88 (216)
T 3b6e_A 51 IIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVL 88 (216)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEE
Confidence 3446788999999998888766441 15677776
No 470
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=85.06 E-value=0.69 Score=33.71 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=29.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.||.|+ .+|..|++ .|.+|++++-+.
T Consensus 2 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 36 (256)
T 1geg_A 2 KKVALVTGAGQGIGK-----AIALRLVK-DGFAVAIADYND 36 (256)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 468999999888886 47788888 999999998764
No 471
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=85.05 E-value=0.7 Score=34.29 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=30.6
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|++++-+.
T Consensus 31 ~gk~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~r~~ 66 (276)
T 3r1i_A 31 SGKRALITGASTGIGK-----KVALAYAE-AGAQVAVAARHS 66 (276)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESSG
T ss_pred CCCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 3689999999998886 57788899 999999998865
No 472
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Probab=85.04 E-value=0.58 Score=34.21 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=29.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.||.|+ .+|..|++ .|.+|++++-+.
T Consensus 4 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 38 (260)
T 1x1t_A 4 GKVAVVTGSTSGIGL-----GIATALAA-QGADIVLNGFGD 38 (260)
T ss_dssp TCEEEETTCSSHHHH-----HHHHHHHH-TTCEEEEECCSC
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHH-cCCEEEEEeCCc
Confidence 578999988888776 57788889 999999998765
No 473
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=85.03 E-value=0.73 Score=33.70 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=29.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.||.|+ .+|..|++ .|.+|++++-+.
T Consensus 7 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 41 (263)
T 3ai3_A 7 GKVAVITGSSSGIGL-----AIAEGFAK-EGAHIVLVARQV 41 (263)
T ss_dssp TCEEEEESCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCchHHH-----HHHHHHHH-CCCEEEEEcCCH
Confidence 578999999888876 57778888 999999998764
No 474
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=85.03 E-value=1 Score=33.69 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=18.1
Q ss_pred EEEEecCCCCCChhhHHHHHHHH
Q 030973 33 VIAVASGKGGVGKSTTAVNLAVA 55 (168)
Q Consensus 33 vI~v~s~kgG~GKTt~a~~LA~~ 55 (168)
.|.+ .+.+|+|||++|..||..
T Consensus 106 ~~~l-~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 106 TIWL-FGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp EEEE-ECSTTSSHHHHHHHHHHH
T ss_pred EEEE-ECCCCCCHHHHHHHHHhh
Confidence 4555 568999999999999985
No 475
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}
Probab=85.03 E-value=0.73 Score=33.67 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=29.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.||.|+ .+|..|++ .|.+|++++-+.
T Consensus 7 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 41 (260)
T 2z1n_A 7 GKLAVVTAGSSGLGF-----ASALELAR-NGARLLLFSRNR 41 (260)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCchHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 578999999988886 57778888 999999998764
No 476
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=85.01 E-value=0.73 Score=34.13 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=29.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+++.|+++.||.|+. +|..|++ .|.+|++++-+.
T Consensus 22 ~k~vlVTGas~gIG~~-----ia~~l~~-~G~~V~~~~r~~ 56 (277)
T 2rhc_B 22 SEVALVTGATSGIGLE-----IARRLGK-EGLRVFVCARGE 56 (277)
T ss_dssp SCEEEEETCSSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHHH-----HHHHHHH-CCCEEEEEeCCH
Confidence 5789999999988874 6778888 899999998764
No 477
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=84.99 E-value=0.68 Score=35.44 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=21.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
.+.+.| .+..|+|||++|..+|..+..
T Consensus 24 ~~a~L~-~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 24 HHALLI-QALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CSEEEE-ECCTTSCHHHHHHHHHHHHTC
T ss_pred ceeEEE-ECCCCchHHHHHHHHHHHHhC
Confidence 444555 677899999999999998864
No 478
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=84.99 E-value=0.72 Score=34.13 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=29.8
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 10 ~k~~lVTGas~gIG~-----a~a~~l~~-~G~~V~~~~r~~ 44 (281)
T 3s55_A 10 GKTALITGGARGMGR-----SHAVALAE-AGADIAICDRCE 44 (281)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEECCS
T ss_pred CCEEEEeCCCchHHH-----HHHHHHHH-CCCeEEEEeCCc
Confidence 689999998888776 57788889 999999999874
No 479
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=84.96 E-value=0.73 Score=34.00 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=29.6
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+++.|+++.||.|+ .+|..|++ .|.+|++++-+.
T Consensus 21 ~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~ 55 (273)
T 1ae1_A 21 GTTALVTGGSKGIGY-----AIVEELAG-LGARVYTCSRNE 55 (273)
T ss_dssp TCEEEEESCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCcchHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 678999999988887 47778888 999999998765
No 480
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=84.91 E-value=0.67 Score=36.43 Aligned_cols=33 Identities=24% Similarity=0.097 Sum_probs=23.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD 68 (168)
++.+++ .+..|+||||++..|+..+ .| +++.++
T Consensus 169 ~~~i~l-~G~~GsGKSTl~~~l~~~~---~g-~~~~~~ 201 (377)
T 1svm_A 169 KRYWLF-KGPIDSGKTTLAAALLELC---GG-KALNVN 201 (377)
T ss_dssp CCEEEE-ECSTTSSHHHHHHHHHHHH---CC-EEECCS
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHhhc---CC-cEEEEe
Confidence 455555 6788999999999999753 33 555433
No 481
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=84.88 E-value=0.65 Score=33.89 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=29.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.||.|+. +|..|++ .|.+|++++-+.
T Consensus 14 ~k~vlVTGas~gIG~~-----ia~~l~~-~G~~V~~~~r~~ 48 (260)
T 2zat_A 14 NKVALVTASTDGIGLA-----IARRLAQ-DGAHVVVSSRKQ 48 (260)
T ss_dssp TCEEEESSCSSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHHH-----HHHHHHH-CCCEEEEEeCCH
Confidence 5789999988888774 7788888 999999998764
No 482
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=84.80 E-value=0.91 Score=30.48 Aligned_cols=19 Identities=47% Similarity=0.522 Sum_probs=14.8
Q ss_pred EEEecCCCCCChhhHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLA 53 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA 53 (168)
|++ -+.+|+||||+...|.
T Consensus 6 v~l-vG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 6 IAL-IGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEE-ECSTTSSHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHh
Confidence 444 5788999999988775
No 483
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=84.79 E-value=0.75 Score=33.95 Aligned_cols=35 Identities=31% Similarity=0.350 Sum_probs=29.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+++.|+++.||.|+ .+|..|++ .|.+|++++-+.
T Consensus 32 ~k~vlVTGasggIG~-----~la~~l~~-~G~~V~~~~r~~ 66 (279)
T 1xg5_A 32 DRLALVTGASGGIGA-----AVARALVQ-QGLKVVGCARTV 66 (279)
T ss_dssp TCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCchHHH-----HHHHHHHH-CCCEEEEEECCh
Confidence 578999998888776 56778888 899999998764
No 484
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Probab=84.73 E-value=0.97 Score=33.08 Aligned_cols=35 Identities=11% Similarity=0.022 Sum_probs=29.0
Q ss_pred CeEEEEecCC--CCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGK--GGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~k--gG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++. ||.|+ .+|..|++ .|.+|++++-+.
T Consensus 9 ~k~vlVTGas~~~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 45 (265)
T 1qsg_A 9 GKRILVTGVASKLSIAY-----GIAQAMHR-EGAELAFTYQND 45 (265)
T ss_dssp TCEEEECCCCSTTSHHH-----HHHHHHHH-TTCEEEEEESST
T ss_pred CCEEEEECCCCCCCHHH-----HHHHHHHH-CCCEEEEEcCcH
Confidence 4688998887 78776 57788899 999999998775
No 485
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=84.72 E-value=0.77 Score=33.66 Aligned_cols=35 Identities=29% Similarity=0.219 Sum_probs=29.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+++.|+++.||.|+. +|..|++ .|.+|++++-+.
T Consensus 7 ~k~vlVTGas~gIG~~-----ia~~l~~-~G~~V~~~~r~~ 41 (260)
T 1nff_A 7 GKVALVSGGARGMGAS-----HVRAMVA-EGAKVVFGDILD 41 (260)
T ss_dssp TCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEeCCH
Confidence 5789999999988874 6788888 999999998764
No 486
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=84.72 E-value=0.63 Score=34.22 Aligned_cols=24 Identities=42% Similarity=0.437 Sum_probs=19.1
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVA 55 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~ 55 (168)
+.+++++ +..|+||||+...++-.
T Consensus 29 Ge~~~l~-G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALM-GPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEE-CSTTSSHHHHHHHHHTC
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCC
Confidence 6788886 46699999998887764
No 487
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=84.68 E-value=0.65 Score=36.27 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=17.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHH
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAV 54 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~ 54 (168)
+..|.+. +.||+||||++..+..
T Consensus 33 ~~killl-G~~~SGKST~~kq~~i 55 (362)
T 1zcb_A 33 LVKILLL-GAGESGKSTFLKQMRI 55 (362)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHH
T ss_pred ccEEEEE-CCCCCcHHHHHHHHHH
Confidence 4555554 6799999999999853
No 488
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=84.67 E-value=0.75 Score=34.56 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=29.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+++.|+++.||.|+ .+|..|++ .|.+|++++-+.
T Consensus 31 gk~vlVTGas~gIG~-----~la~~l~~-~G~~V~~~~r~~ 65 (301)
T 3tjr_A 31 GRAAVVTGGASGIGL-----ATATEFAR-RGARLVLSDVDQ 65 (301)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence 678999998888776 57778888 999999998765
No 489
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2
Probab=84.66 E-value=0.81 Score=33.24 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=29.5
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+++.|+++.||.|+ ++|..|++ .|.+|++++-+.
T Consensus 14 ~k~vlITGasggiG~-----~~a~~l~~-~G~~V~~~~r~~ 48 (265)
T 1h5q_A 14 NKTIIVTGGNRGIGL-----AFTRAVAA-AGANVAVIYRSA 48 (265)
T ss_dssp TEEEEEETTTSHHHH-----HHHHHHHH-TTEEEEEEESSC
T ss_pred CCEEEEECCCchHHH-----HHHHHHHH-CCCeEEEEeCcc
Confidence 678999998888775 67788888 999999998754
No 490
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=84.62 E-value=0.85 Score=32.32 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=21.1
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHH
Q 030973 34 IAVASGKGGVGKSTTAVNLAVALAS 58 (168)
Q Consensus 34 I~v~s~kgG~GKTt~a~~LA~~la~ 58 (168)
+.++.+..|+||||+.-++.+.|..
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 5566788999999999999888864
No 491
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=84.59 E-value=0.68 Score=33.57 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=29.0
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.+|.|+ .+|..|++ .|.+|++++.+.
T Consensus 4 ~k~~lVTGas~gIG~-----~ia~~l~~-~G~~V~~~~~~~ 38 (246)
T 3osu_A 4 TKSALVTGASRGIGR-----SIALQLAE-EGYNVAVNYAGS 38 (246)
T ss_dssp SCEEEETTCSSHHHH-----HHHHHHHH-TTCEEEEEESSC
T ss_pred CCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEeCCC
Confidence 578999998888776 57788899 999999988753
No 492
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Probab=84.58 E-value=0.77 Score=34.26 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=29.2
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+++.|+++.||.|+ ++|..|++ .|.+|++++-+.
T Consensus 18 ~k~vlVTGasggIG~-----~la~~l~~-~G~~V~~~~r~~ 52 (303)
T 1yxm_A 18 GQVAIVTGGATGIGK-----AIVKELLE-LGSNVVIASRKL 52 (303)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 578999998888776 57788888 999999998764
No 493
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=84.55 E-value=0.69 Score=34.15 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=30.1
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 26 ~gk~vlVTGas~gIG~-----aia~~la~-~G~~V~~~~r~~ 61 (266)
T 3grp_A 26 TGRKALVTGATGGIGE-----AIARCFHA-QGAIVGLHGTRE 61 (266)
T ss_dssp TTCEEEESSTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 4689999999888776 57788899 999999998764
No 494
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=84.52 E-value=0.81 Score=34.05 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=29.8
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|++.|+++.||.|+ .+|..|++ .|.+|++++-+.
T Consensus 15 ~gk~vlVTGas~gIG~-----~~a~~L~~-~G~~V~~~~r~~ 50 (291)
T 3rd5_A 15 AQRTVVITGANSGLGA-----VTARELAR-RGATVIMAVRDT 50 (291)
T ss_dssp TTCEEEEECCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence 3689999999888775 56788888 999999998765
No 495
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=84.52 E-value=0.76 Score=33.76 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=30.0
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 7 ~~k~~lVTGas~GIG~-----aia~~l~~-~G~~V~~~~r~~ 42 (265)
T 3lf2_A 7 SEAVAVVTGGSSGIGL-----ATVELLLE-AGAAVAFCARDG 42 (265)
T ss_dssp TTCEEEEETCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 3689999998888776 46788888 999999998775
No 496
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=84.46 E-value=0.77 Score=33.33 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=29.3
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.+++.|+++.||.|+. +|..|++ .|.+|++++-+.
T Consensus 7 ~k~~lVTGas~gIG~a-----ia~~l~~-~G~~V~~~~r~~ 41 (247)
T 2jah_A 7 GKVALITGASSGIGEA-----TARALAA-EGAAVAIAARRV 41 (247)
T ss_dssp TCEEEEESCSSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence 5789999998888874 6778888 999999998764
No 497
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=84.42 E-value=0.64 Score=34.19 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=29.4
Q ss_pred CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (168)
Q Consensus 31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~ 71 (168)
.|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 10 ~k~~lVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~ 44 (267)
T 3t4x_A 10 GKTALVTGSTAGIGK-----AIATSLVA-EGANVLINGRRE 44 (267)
T ss_dssp TCEEEETTCSSHHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 678999998888776 57788889 999999998765
No 498
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=84.39 E-value=0.37 Score=36.67 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=18.4
Q ss_pred EEecCCCCCChhhHHHHHHHHHH
Q 030973 35 AVASGKGGVGKSTTAVNLAVALA 57 (168)
Q Consensus 35 ~v~s~kgG~GKTt~a~~LA~~la 57 (168)
.++.+..|+|||++|..++..+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 34467889999999999988653
No 499
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}
Probab=84.38 E-value=0.75 Score=33.86 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=30.5
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~ 72 (168)
..+++.|+++.||.|+. +|..|++ .|.+|++++-+..
T Consensus 33 ~~k~vlITGasggIG~~-----la~~L~~-~G~~V~~~~r~~~ 69 (279)
T 3ctm_A 33 KGKVASVTGSSGGIGWA-----VAEAYAQ-AGADVAIWYNSHP 69 (279)
T ss_dssp TTCEEEETTTTSSHHHH-----HHHHHHH-HTCEEEEEESSSC
T ss_pred CCCEEEEECCCcHHHHH-----HHHHHHH-CCCEEEEEeCCHH
Confidence 46789999999998874 6778888 8999999987753
No 500
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=84.38 E-value=0.59 Score=34.56 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=29.4
Q ss_pred CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (168)
Q Consensus 30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D 70 (168)
..|++.|+++.+|.|+ .+|..|++ .|.+|++++..
T Consensus 27 ~~k~vlVTGas~gIG~-----aia~~la~-~G~~V~~~~~~ 61 (269)
T 4dmm_A 27 TDRIALVTGASRGIGR-----AIALELAA-AGAKVAVNYAS 61 (269)
T ss_dssp TTCEEEETTCSSHHHH-----HHHHHHHH-TTCEEEEEESS
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCC
Confidence 4689999998888776 57788899 99999998874
Done!