BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030974
MSFTITTPNVQSSLQSTKFDTHPCSKSLKQGSRTKLFNGWQQLEGSKKGRACLNWPLIAI
LVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYYDSDAYREDG
GDGTGHWFYEKQEEIEEAARAELWREELIEEIEQKVGGLQELEEAGRK

High Scoring Gene Products

Symbol, full name Information P value
PnsB4
AT1G18730 		protein from Arabidopsis thaliana 2.9e-32

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030974
        (168 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2034980 - symbol:PnsB4 "AT1G18730" species:370...   353  2.9e-32   1


>TAIR|locus:2034980 [details] [associations]
            symbol:PnsB4 "AT1G18730" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid
            membrane" evidence=IDA] [GO:0009773 "photosynthetic electron
            transport in photosystem I" evidence=TAS] [GO:0010598 "NAD(P)H
            dehydrogenase complex (plastoquinone)" evidence=NAS] [GO:0000023
            "maltose metabolic process" evidence=RCA] [GO:0006098
            "pentose-phosphate shunt" evidence=RCA] [GO:0006364 "rRNA
            processing" evidence=RCA] [GO:0009853 "photorespiration"
            evidence=RCA] [GO:0015979 "photosynthesis" evidence=RCA]
            [GO:0015995 "chlorophyll biosynthetic process" evidence=RCA]
            [GO:0019252 "starch biosynthetic process" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0030003
            "cellular cation homeostasis" evidence=RCA] [GO:0070838 "divalent
            metal ion transport" evidence=RCA] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009535 GO:GO:0009773 GO:GO:0010598
            EMBL:AY080701 EMBL:AY117165 EMBL:AK226496 IPI:IPI00518157
            RefSeq:NP_173308.2 UniGene:At.43083 UniGene:At.47916 STRING:Q8RXS1
            PRIDE:Q8RXS1 EnsemblPlants:AT1G18730.1 GeneID:838455
            KEGG:ath:AT1G18730 TAIR:At1g18730 HOGENOM:HOG000005926
            InParanoid:Q8RXS1 OMA:LWREELI PhylomeDB:Q8RXS1 ProtClustDB:PLN00180
            ArrayExpress:Q8RXS1 Genevestigator:Q8RXS1 Uniprot:Q8RXS1
        Length = 175

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 77/175 (44%), Positives = 101/175 (57%)

Query:     2 SFTITTPNVQSSLQ-STKFDTHP-----CSKSLKQGSRTKLFNGWQQLEGSKKGRACL-- 53
             SFT T  ++ SS   S K ++ P      SK++ +     L      + GS   R  L  
Sbjct:     7 SFTFTNLHIPSSYNHSPKQNSGPNHGYWLSKNVNEKRERNL------MRGSLCVRKALPH 60

Query:    54 NWPLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYYDS 113
             + PL+A++V+  EG RD+ITEK +WHLSD+AIKNVY+FYIMFTCWGC++F + KDP+YDS
Sbjct:    61 DLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDPFYDS 120

Query:   114 DAYREDGGDGTGHWFYXXXXXXXXXXXXXXXXXXXXXXXXXXVGGLQELEEAGRK 168
             + YR DGGDGTG+W Y                          VGGL+ELEEA  K
Sbjct:   121 EEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVTK 175


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.437    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      168       142   0.00091  102 3  11 22  0.45    31
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  163 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.25u 0.12s 12.37t   Elapsed:  00:00:01
  Total cpu time:  12.25u 0.12s 12.37t   Elapsed:  00:00:01
  Start:  Fri May 10 06:21:50 2013   End:  Fri May 10 06:21:51 2013

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