BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030974
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin
Length = 234
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 17 TKFDTHPCSKSLKQGSRTKLF--NGWQQ 42
F HPC + LK G TK+F N W Q
Sbjct: 194 VSFGAHPCGQGLKPGVYTKVFDYNHWIQ 221
>pdb|3MFM|C Chain C, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|F Chain F, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|A Chain A, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|B Chain B, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|D Chain D, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|E Chain E, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
Length = 530
Score = 26.9 bits (58), Expect = 5.2, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 35 KLFNGWQQLEGSKKGRACLN--WPLIAILVEHAEGQRDLITEKSIWHLSDQA 84
K F G + GSK A LN WP I V A+G +++ ++I D A
Sbjct: 415 KAFGGAYNVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDDA 466
>pdb|1XNV|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNV|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNY|A Chain A, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XNY|B Chain B, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XO6|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
Length = 530
Score = 26.9 bits (58), Expect = 5.7, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 35 KLFNGWQQLEGSKKGRACLN--WPLIAILVEHAEGQRDLITEKSIWHLSDQA 84
K F G + GSK A LN WP I V A+G +++ ++I D A
Sbjct: 415 KAFGGAYDVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDDA 466
>pdb|3IBB|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|C Chain C, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|D Chain D, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|E Chain E, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|F Chain F, Propionyl-Coa Carboxylase Beta Subunit, D422a
Length = 530
Score = 26.6 bits (57), Expect = 6.6, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 35 KLFNGWQQLEGSKKGRACLN--WPLIAILVEHAEGQRDLITEKSIWHLSDQA 84
K F G + GSK A LN WP I V A+G +++ ++I D A
Sbjct: 415 KAFGGAYAVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDDA 466
>pdb|3IB9|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422l
pdb|3IB9|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422l
Length = 530
Score = 26.2 bits (56), Expect = 9.8, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 35 KLFNGWQQLEGSKKGRACLN--WPLIAILVEHAEGQRDLITEKSIWHLSDQA 84
K F G + GSK A LN WP I V A+G +++ ++I D A
Sbjct: 415 KAFGGAYLVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDDA 466
>pdb|3IAV|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422v
pdb|3IAV|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422v
Length = 530
Score = 26.2 bits (56), Expect = 9.9, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 35 KLFNGWQQLEGSKKGRACLN--WPLIAILVEHAEGQRDLITEKSIWHLSDQA 84
K F G + GSK A LN WP I V A+G +++ ++I D A
Sbjct: 415 KAFGGAYVVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDDA 466
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,507,399
Number of Sequences: 62578
Number of extensions: 160442
Number of successful extensions: 199
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 198
Number of HSP's gapped (non-prelim): 6
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)