BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030974
         (168 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9D0B8|RIBC1_MOUSE RIB43A-like with coiled-coils protein 1 OS=Mus musculus GN=Ribc1
           PE=2 SV=1
          Length = 379

 Score = 32.3 bits (72), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 6/103 (5%)

Query: 54  NWPLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFSATKDPYYDS 113
           ++ L+A ++E  E +R     K +    +Q  +  Y     F  W    F   + PYY+ 
Sbjct: 72  HYDLVAQMLEKEEAERAYRLSKRVQDFREQR-QQQYKNGHEFDFWDPDQFQEFRVPYYEK 130

Query: 114 DAYREDGGDGTGHWFYEKQEEIEEAARAELWREELIEEIEQKV 156
           DAY    G  +  +F+   E++E A+   + +E++   +E+++
Sbjct: 131 DAY---FGPASMQYFF--GEDLERASHVRMQQEQMRYNLEKQL 168


>sp|Q9NFH9|HCYB_APHCL Hemocyanin B chain OS=Aphonopelma californicum GN=HCB PE=2 SV=3
          Length = 627

 Score = 32.3 bits (72), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 107 KDPYYDSDAYREDGGDGTGHWFYEKQEEIEEAARAELWREELIEEIEQKVGGL 159
           KDP Y+   YRED G    HW +              WR E++  I+ + G L
Sbjct: 154 KDPEYNLAYYREDIGVNAHHWHW-------HLVYPATWRPEVVHRIKDRKGEL 199


>sp|P08793|XDH_CALVI Xanthine dehydrogenase OS=Calliphora vicina GN=XDH PE=2 SV=1
          Length = 1353

 Score = 30.8 bits (68), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 128  FYEKQEEIEEAARAELWREELIEEIEQKVG---GLQELEEAG 166
            +Y+K++EIEE  R   WR+  I  +  K G   G+  L +AG
Sbjct: 1000 YYQKRKEIEEFNRNHRWRKRGISLVPTKYGIAFGVSHLNQAG 1041


>sp|Q04396|LPP1_YEAST Lipid phosphate phosphatase 1 OS=Saccharomyces cerevisiae (strain
           ATCC 204508 / S288c) GN=LPP1 PE=1 SV=1
          Length = 274

 Score = 29.6 bits (65), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 40  WQQLEGSKKGRACLNWPLIAILVEHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWG 99
           WQ++  ++  R+C+  PL+A++V  +     +I  +  W+  D     V  F +++ CW 
Sbjct: 203 WQRVFTTRNTRSCIWCPLLALVVMVSR----VIDHRHHWY--DVVSGAVLAFLVIYCCWK 256

Query: 100 CMFFSATK 107
             F +  K
Sbjct: 257 WTFTNLAK 264


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.133    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,299,165
Number of Sequences: 539616
Number of extensions: 2690660
Number of successful extensions: 8374
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 8367
Number of HSP's gapped (non-prelim): 35
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)