Query 030974
Match_columns 168
No_of_seqs 35 out of 37
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 11:27:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qdq_A Talin-1; dimerisation d 66.1 3.8 0.00013 27.5 2.4 14 134-147 8-21 (50)
2 1x4t_A Hypothetical protein LO 48.9 16 0.00054 26.9 3.4 22 139-160 24-45 (92)
3 1gmj_A ATPase inhibitor; coile 44.7 24 0.00081 25.5 3.8 23 144-166 45-67 (84)
4 2nr1_A NR1 M2, M2; receptor, s 40.3 16 0.00055 21.9 1.9 16 87-102 6-21 (27)
5 3tso_C RAB11 family-interactin 30.5 38 0.0013 24.2 2.9 14 151-164 29-42 (75)
6 2xtp_A GTPase IMAP family memb 29.9 15 0.00053 27.1 0.8 24 138-161 229-252 (260)
7 3nmd_A CGMP dependent protein 25.3 1E+02 0.0034 21.6 4.3 31 128-158 21-51 (72)
8 2wdq_D Succinate dehydrogenase 23.8 52 0.0018 23.2 2.6 38 63-104 71-108 (115)
9 3u53_A BIS(5'-nucleosyl)-tetra 23.1 37 0.0013 23.2 1.7 24 122-145 33-61 (155)
10 2jwo_A RAG-2, V(D)J recombinat 23.1 39 0.0013 24.6 1.8 32 106-137 24-58 (82)
11 1dh3_A Transcription factor CR 21.8 1.2E+02 0.0043 19.3 3.9 26 136-161 11-36 (55)
No 1
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=66.11 E-value=3.8 Score=27.48 Aligned_cols=14 Identities=36% Similarity=0.340 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHH
Q 030974 134 EIEEAARAELWREE 147 (168)
Q Consensus 134 ~~E~~aR~elwrEe 147 (168)
..|.+||+++.|-|
T Consensus 8 aqEi~Aqe~iLr~E 21 (50)
T 2qdq_A 8 AQIIAAQEEMLRKE 21 (50)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35678899988865
No 2
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=48.93 E-value=16 Score=26.90 Aligned_cols=22 Identities=45% Similarity=0.830 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH
Q 030974 139 ARAELWREELIEEIEQKVGGLQ 160 (168)
Q Consensus 139 aR~elwrEeLieEIEqkvgglr 160 (168)
+-+|-||-++|+||=+||..++
T Consensus 24 ~~AekWR~qvikEIs~Kv~~Iq 45 (92)
T 1x4t_A 24 PKAEKWRRQIIGEISKKVAQIQ 45 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3468899999999999998654
No 3
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=44.69 E-value=24 Score=25.54 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhh
Q 030974 144 WREELIEEIEQKVGGLQELEEAG 166 (168)
Q Consensus 144 wrEeLieEIEqkvgglrelEea~ 166 (168)
.|+.|++||++....+.+||++-
T Consensus 45 LKkkl~~el~~h~~ei~~le~~i 67 (84)
T 1gmj_A 45 LKKHKENEISHHAKEIERLQKEI 67 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999874
No 4
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=40.29 E-value=16 Score=21.93 Aligned_cols=16 Identities=25% Similarity=0.615 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 030974 87 NVYLFYIMFTCWGCMF 102 (168)
Q Consensus 87 ~Vl~~ltm~f~~gclF 102 (168)
.+-+.-+|-|+||++|
T Consensus 6 ~~~l~aa~wF~WGvll 21 (27)
T 2nr1_A 6 ALTLSSAMWFSWGVLL 21 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ceehhhhHHHhhHhhe
Confidence 3456778999999987
No 5
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=30.49 E-value=38 Score=24.16 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=9.3
Q ss_pred HHHHhhhhhHHHHH
Q 030974 151 EIEQKVGGLQELEE 164 (168)
Q Consensus 151 EIEqkvgglrelEe 164 (168)
||..|-.-+||||+
T Consensus 29 ~l~~k~~~v~eLEd 42 (75)
T 3tso_C 29 LLRRKDTHIRELED 42 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55566666777775
No 6
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=29.94 E-value=15 Score=27.07 Aligned_cols=24 Identities=4% Similarity=0.040 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHH
Q 030974 138 AARAELWREELIEEIEQKVGGLQE 161 (168)
Q Consensus 138 ~aR~elwrEeLieEIEqkvgglre 161 (168)
+..++-+|+.|+|++.+....|+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~ 252 (260)
T 2xtp_A 229 PVGSDERVKEFKQSLIKYMETQRS 252 (260)
T ss_dssp -------CHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777776666554
No 7
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.31 E-value=1e+02 Score=21.63 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=18.8
Q ss_pred eeechHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030974 128 FYEKQEEIEEAARAELWREELIEEIEQKVGG 158 (168)
Q Consensus 128 ~Y~~qe~~E~~aR~elwrEeLieEIEqkvgg 158 (168)
+=+.|+.++..-.+=--++++|+|.|.++.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~e 51 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQ 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777765555445566667666665544
No 8
>2wdq_D Succinate dehydrogenase hydrophobic membrane ANCH subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D* 2wp9_D* 2wu2_D* 2ws3_D* 2wu5_D*
Probab=23.82 E-value=52 Score=23.20 Aligned_cols=38 Identities=11% Similarity=0.077 Sum_probs=30.3
Q ss_pred HhhhcccceeeecceeeccHHHHHHHHHHHHHHHHHHHhhhc
Q 030974 63 EHAEGQRDLITEKSIWHLSDQAIKNVYLFYIMFTCWGCMFFS 104 (168)
Q Consensus 63 e~~e~~rd~i~~ksiwhlsd~aIK~Vl~~ltm~f~~gclFFG 104 (168)
--.-|-|+++.|=--. ...|.++..+..+++++|++.|
T Consensus 71 H~~~Gir~ii~Dyv~~----~~~R~~l~~~~~~~~~~~~~~g 108 (115)
T 2wdq_D 71 HAWIGMWQVLTDYVKP----LALRLMLQLVIVVALVVYVIYG 108 (115)
T ss_dssp HHHHHHHHHHHHHCCS----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccc----hhHHHHHHHHHHHHHHHHHHHH
Confidence 3356888888774432 5899999999999999999988
No 9
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=23.06 E-value=37 Score=23.23 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=15.1
Q ss_pred CCccceee-----echHHHHHHHHHHHHH
Q 030974 122 DGTGHWFY-----EKQEEIEEAARAELWR 145 (168)
Q Consensus 122 dgtghW~Y-----~~qe~~E~~aR~elwr 145 (168)
+|.|+|.. |.-|..+++|+.|++-
T Consensus 33 ~~~~~W~lPgG~ve~gEt~~~aa~REl~E 61 (155)
T 3u53_A 33 DGIHHWTPPKGHVEPGEDDLETALRETQE 61 (155)
T ss_dssp SSSCCEECSEEECCSSCCHHHHHHHHHHH
T ss_pred CCCCCEECCeeeccCCCCHHHHHHHHHHH
Confidence 44567864 5567777777666543
No 10
>2jwo_A RAG-2, V(D)J recombination-activating protein 2; phosphoinositide signaling, PHD domain, DNA recombination, DNA-binding, endonuclease, hydrolase; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 2v83_A* 2v85_A* 2v86_A* 2v87_A* 2v88_A* 2v89_A*
Probab=23.05 E-value=39 Score=24.59 Aligned_cols=32 Identities=28% Similarity=0.631 Sum_probs=23.4
Q ss_pred cCCCCCCCCCcccC---CCCCccceeeechHHHHH
Q 030974 106 TKDPYYDSDAYRED---GGDGTGHWFYEKQEEIEE 137 (168)
Q Consensus 106 tKngFYDSD~YrGn---GGdgtghW~Y~~qe~~E~ 137 (168)
|=-|||.++-.+=. -+.|-|||+-+.-+++++
T Consensus 24 tw~p~ystel~kpami~cs~g~ghwvhaqcm~l~e 58 (82)
T 2jwo_A 24 TWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLEE 58 (82)
T ss_dssp TCCCCSSSCSSSCCCEECCSSSCCEECSGGGTCCH
T ss_pred cccccccchhcchhhhhcCCCcchHHHHHHhhHHH
Confidence 45689998876542 244579999999988854
No 11
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.85 E-value=1.2e+02 Score=19.32 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHH
Q 030974 136 EEAARAELWREELIEEIEQKVGGLQE 161 (168)
Q Consensus 136 E~~aR~elwrEeLieEIEqkvgglre 161 (168)
|++.|--.=..+-++++|.+|..|..
T Consensus 11 esA~rSR~RKk~~~~~LE~~v~~L~~ 36 (55)
T 1dh3_A 11 EAARESRRKKKEYVKSLENRVAVLEN 36 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556789999999887653
Done!