BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030975
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/148 (64%), Positives = 110/148 (74%), Gaps = 8/148 (5%)
Query: 14 LSPKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPLPSSPSRFVRNVAVSS 73
+PK+L F S+P S SLLS S S KL + +S S + + S SRF RNVA++S
Sbjct: 13 FNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWN-----SPASRFARNVAITS 67
Query: 74 EFDQEEDLLSD---EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKV 130
EF+ EED +D +FS DLKLFVGNLPF+VDSAQLA LFE+AGNVEMVEVIYDK+
Sbjct: 68 EFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKI 127
Query: 131 TGRSRGFGFVTMSSVEEVEAAAQQFNGY 158
TGRSRGFGFVTMSSV EVEAAAQQFNGY
Sbjct: 128 TGRSRGFGFVTMSSVSEVEAAAQQFNGY 155
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
+++VGNL + VD L LF G V VIYD+ +GRS+GFGFVT S +EV+ A +
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 155 FNG 157
+G
Sbjct: 265 LDG 267
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 145 bits (367), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/99 (75%), Positives = 81/99 (81%), Gaps = 5/99 (5%)
Query: 64 RFVRNVAVSSEFDQEEDLLSDEDG----SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGN 119
RFVR V +S +FDQ ED+ +DG NFSPDLK+FVGNLPFS DSA LA LFE AGN
Sbjct: 54 RFVRKVTLS-DFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGN 112
Query: 120 VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 158
VEMVEVIYDK+TGRSRGFGFVTMSS EEVEAA QQFNGY
Sbjct: 113 VEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGY 151
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
+++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT SS EEV A +
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248
Query: 155 FNG 157
+G
Sbjct: 249 LDG 251
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 145 bits (367), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 97/154 (62%), Positives = 115/154 (74%), Gaps = 10/154 (6%)
Query: 14 LSPKTLAFYNSKPTSFSLLSSSSSHKLLAKP-ISI-SSSFIHSFQPLPSSPSRFVRNVAV 71
+PK+L S+P S S+L S S KL + +SI +SS + P PSRFVRNVAV
Sbjct: 11 FNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPA-EYPSRFVRNVAV 69
Query: 72 SSEFD-QEEDLLSDEDGS------NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVE 124
SS+F+ +E+D+ +D D S +FSPDLKLFVGNL F+VDSAQLA LFE+AGNVEMVE
Sbjct: 70 SSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVE 129
Query: 125 VIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 158
VIYDKVTGRSRGFGFVTMS+ EVEAAAQQFNGY
Sbjct: 130 VIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGY 163
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 41/63 (65%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
+L+VGNL + VD L LF G V VIYD+ +GRS+GFGFVT+SS +EV+ A
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 155 FNG 157
NG
Sbjct: 318 LNG 320
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 135 bits (341), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 74/103 (71%), Positives = 80/103 (77%), Gaps = 4/103 (3%)
Query: 56 QPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFE 115
+P SS F VA+S FDQ ED + + FS DLKLFVGNLPFSVDSA LAGLFE
Sbjct: 53 KPFESS---FSTRVALSG-FDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFE 108
Query: 116 TAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 158
AGNVEMVEVIYDK+TGRSRGFGFVTMS+ EEVEAA QQFNGY
Sbjct: 109 RAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGY 151
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 41/63 (65%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
+++VGNL + VD L LF GNV +V+YD+ +GRSRGFGFVT SS +EV A
Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDS 267
Query: 155 FNG 157
NG
Sbjct: 268 LNG 270
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 133 bits (335), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 72/103 (69%), Positives = 81/103 (78%), Gaps = 4/103 (3%)
Query: 56 QPLPSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFE 115
+P SS F VA+S +FDQ ED + + FS DLKLFVGNLPFSVDSA LAGLFE
Sbjct: 54 KPFESS---FSTRVALS-DFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFE 109
Query: 116 TAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 158
AGNVE+VEVIYDK++GRSRGFGFVTMS+ EEVEAA QQFNGY
Sbjct: 110 RAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGY 152
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 41/63 (65%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
+++VGNL + VD L LF GNV +V+YD+ +GRSRGFGFVT SS +EV A
Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268
Query: 155 FNG 157
NG
Sbjct: 269 LNG 271
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/99 (71%), Positives = 77/99 (77%), Gaps = 5/99 (5%)
Query: 64 RFVRNVAVSSEFDQ----EEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGN 119
RFVR V + +FDQ E+ E+ NFSPDLK+FVGNL FS DSA LA LFE AGN
Sbjct: 54 RFVRKVTLP-DFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGN 112
Query: 120 VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 158
VEMVEVIYDK+TGRSRGFGFVTMSS EEVEAA QQFNGY
Sbjct: 113 VEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGY 151
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
+++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT SS EEV A +
Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 254
Query: 155 FNG 157
+G
Sbjct: 255 LDG 257
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 10/92 (10%)
Query: 85 EDGSNFSP---DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVT 141
E G FS + KLFVGNLP+ VDS +LAG+F+ AG VE+ EVIY++ T RSRGFGFVT
Sbjct: 43 EGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVT 102
Query: 142 MSSVEEVEAAAQQFNGY-------VSNKLSPK 166
MS+VEE E A + NGY NK +P+
Sbjct: 103 MSTVEEAEKAVELLNGYDMDGRQLTVNKAAPR 134
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 45/70 (64%)
Query: 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEE 147
+F P +++VGNLP+ VD+++L LF G V V+ D+ TGRSRGFGFVTMSS E
Sbjct: 143 GDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESE 202
Query: 148 VEAAAQQFNG 157
V A +G
Sbjct: 203 VNDAIAALDG 212
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 51/67 (76%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
KLFVGNLP+ VDS LA LFE AG VE+ EVIY++ T +SRGFGFVTMS+VEE E A +
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196
Query: 155 FNGYVSN 161
+N Y N
Sbjct: 197 YNRYDVN 203
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVE 149
F +++VGN+P+ +D A+L LF G V V+YD+ TGRSRGFGFVTM+S E+
Sbjct: 226 FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMS 285
Query: 150 AAAQQFNG 157
A +G
Sbjct: 286 DAIANLDG 293
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 7/83 (8%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEA 150
S D KLFVGNLP+ +DS LA LF+ AG VE+ EVIY++ T RSRGFGFVTMS+VEE +
Sbjct: 94 SEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADK 153
Query: 151 AAQQFNGY-------VSNKLSPK 166
A + ++ Y NK +P+
Sbjct: 154 AVELYSQYDLNGRLLTVNKAAPR 176
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVE 149
F P +++VGN+P+ +D A+L +F G V V++D+ +GRSRGFGFVTMSS E+
Sbjct: 187 FQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMS 246
Query: 150 AAAQQFNG 157
A +G
Sbjct: 247 EAIANLDG 254
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 7/83 (8%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEA 150
S + KLFVGNL + V+S LA LFE AG VE+ EVIY++ T +SRGFGFVTMSSV+E E
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206
Query: 151 AAQQFNGY-------VSNKLSPK 166
A ++FN Y NK +P+
Sbjct: 207 AVEKFNRYDLNGRLLTVNKAAPR 229
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%)
Query: 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVE 149
+ P +++VGNLP+ VD+ +L LF G V V+YD+ TGRSRGFGFVTMS V+E+
Sbjct: 240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299
Query: 150 AAAQQFNG 157
A +G
Sbjct: 300 EAISALDG 307
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 49/63 (77%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
+L+VGNLPFS+ S+QL+ +F AG V VE++YD+VT RSRGF FVTM SVEE + A +
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 155 FNG 157
F+G
Sbjct: 175 FDG 177
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
KL+V NL +++ S L F +VIYD+ +GRSRGFGF+T SS E + +A
Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277
Query: 155 FN 156
N
Sbjct: 278 MN 279
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 45/62 (72%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
+L+VGN+P ++++ +L + E G +E+ EV+YDK +GRSR FGFVTM +VE+ A ++
Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144
Query: 155 FN 156
N
Sbjct: 145 LN 146
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
K+++GNL +V + L F G V +V T +S GFGFV+ SS EEVEAA Q
Sbjct: 185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQA 244
Query: 155 FNGYV 159
N V
Sbjct: 245 LNNSV 249
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 153
++L+VG+L F++ L G+FE G +E ++++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 154 QFNGY 158
Q NG+
Sbjct: 310 QLNGF 314
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 153
++L+VG+L F++ L G+FE G +E ++++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 154 QFNGY 158
Q NG+
Sbjct: 310 QLNGF 314
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 153
++L+VG+L F++ L G+FE G +E ++++ D TGRS+G+GF+T S E + A +
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 154 QFNGY 158
Q NG+
Sbjct: 310 QLNGF 314
>sp|Q9H0Z9|RBM38_HUMAN RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2
Length = 239
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 55 FQPLPSSPSR-FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGL 113
QP P +PS F R +A + + + F+ K+FVG LP+ A L
Sbjct: 3 LQPAPCAPSAGFPRPLAAPGA------MHGSQKDTTFT---KIFVGGLPYHTTDASLRKY 53
Query: 114 FETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 162
FE G++E VI D+ TG+SRG+GFVTM+ E A + N + +
Sbjct: 54 FEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGR 102
>sp|Q6DIV4|RBM38_XENTR RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1
Length = 219
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
K+FVG LP+ A L FE G+++ VI D+ TG+SRG+GFVTMS E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKD 71
Query: 155 FNGYVSNK 162
N + +
Sbjct: 72 PNPIIDGR 79
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%)
Query: 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 153
++L+VG+L F++ L G+FE G ++ + ++ D TGRS+G+GF+T S E A +
Sbjct: 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 322
Query: 154 QFNGY 158
Q NG+
Sbjct: 323 QLNGF 327
>sp|D3Z4I3|RBM24_MOUSE RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1
Length = 236
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
K+FVG LP+ A L FE G++E VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 155 FNGYVSNK 162
N + +
Sbjct: 72 PNPIIDGR 79
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 86 DGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSV 145
+G + PD +LFVGNLP++V L LF AG+V ++ ++ GRSRG G V MSS+
Sbjct: 171 NGKDSEPDRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQ-EGRSRGIGIVVMSSM 229
Query: 146 EEVEAAAQQFN 156
+E A Q +
Sbjct: 230 KEAMHAIQMLH 240
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155
++VGNLP++ L LF G+V + Y+ TGRS+GFG V + + ++ ++
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 370
Query: 156 NGY 158
NGY
Sbjct: 371 NGY 373
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 153
+++VGNL + V +L GNV E++ + G S+G + S+ EE A +
Sbjct: 78 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYSTAEEARTAIK 135
>sp|Q5ZJX4|RBM38_CHICK RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1
Length = 215
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
K+FVG LP+ + L FE G++E VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 155 FNGYVSNK 162
N + +
Sbjct: 72 PNPIIDGR 79
>sp|Q6GQD3|RB24A_XENLA RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1
Length = 225
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
K+FVG LP+ + L FE G++E VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 155 FNGYVSNK 162
N + +
Sbjct: 72 PNPIIDGR 79
>sp|Q9I8B3|RB24B_XENLA RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1
Length = 224
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
K+FVG LP+ + L FE G++E VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 155 FNGYVSNK 162
N + +
Sbjct: 72 PNPIIDGR 79
>sp|Q9BX46|RBM24_HUMAN RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1
Length = 236
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
K+FVG LP+ A L FE G +E VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 155 FNGYVSNK 162
N + +
Sbjct: 72 PNPIIDGR 79
>sp|Q7T3I7|RBM38_XENLA RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2
Length = 214
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
K+FVG LP+ A L FE G+++ VI D+ T +SRG+GFVTMS E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAERACKD 71
Query: 155 FNGYVSNK 162
N + +
Sbjct: 72 PNPIIDGR 79
>sp|Q6P8A7|RBM24_XENTR RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1
Length = 226
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
K+FVG LP+ + L FE G++E VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 155 FNGYVSNK 162
N + +
Sbjct: 72 PNPIIDGR 79
>sp|Q5ZMA3|RBM24_CHICK RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2
Length = 225
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
K+FVG LP+ + L FE G++E VI D+ TG+SRG+GFVTM+ E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 155 FNGYVSNK 162
N + +
Sbjct: 72 PNPIIDGR 79
>sp|Q62176|RBM38_MOUSE RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2
Length = 237
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 60 SSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGN 119
SPS F R A S + + + F+ K+FVG LP+ A L FE G+
Sbjct: 7 CSPSVFPRPSAAPSA------MHGSQKDTTFT---KIFVGGLPYHTTDASLRKYFEGFGD 57
Query: 120 VEMVEVIYDKVTGRSRGFGFVTM 142
+E VI D+ TG+SRG+GFVTM
Sbjct: 58 IEEAVVITDRQTGKSRGYGFVTM 80
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
KLF+G + +S+D L F G V VI D+ TGRSRGFGFVT +S E +A Q
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 155 FNG 157
+G
Sbjct: 101 LDG 103
>sp|Q76LC6|RBM24_DANRE RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1
Length = 230
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
K+FVG LP+ + L FE G +E VI D+ TG+SRG+GFVTM+ + A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKD 71
Query: 155 FNGYVSNK 162
N + +
Sbjct: 72 PNPIIDGR 79
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
KLFVG L F D L +F G ++ V V+ D+ T RSRGFGFVT + E+ + A
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 155 FNG 157
NG
Sbjct: 67 MNG 69
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
+ FVG L ++ D L F G+V ++I D+ TGRSRGFGFVT +S E + A +
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 155 FNG 157
NG
Sbjct: 67 MNG 69
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 33/57 (57%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAA 151
KLF+G L F L FE G + V+ D T RSRGFGFVT S VEEV+AA
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
K+FVG + + L FE G +E +EV+ D+ +G+ RGF FVT + V+ Q
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 155 ----FNGY 158
NG+
Sbjct: 187 KYHTINGH 194
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 33/57 (57%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAA 151
KLF+G L F L FE G + V+ D T RSRGFGFVT S VEEV+AA
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
K+FVG + + L FE G +E +EV+ D+ +G+ RGF FVT + V+ Q
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 155 ----FNGY 158
NG+
Sbjct: 187 KYHTINGH 194
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 33/57 (57%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAA 151
KLF+G L F L FE G + V+ D T RSRGFGFVT S VEEV+AA
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
K+FVG + + L FE G +E +EV+ D+ +G+ RGF FVT + V+ Q
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 155 ----FNGY 158
NG+
Sbjct: 187 KYHTINGH 194
>sp|A8NS61|EIF3G_BRUMA Eukaryotic translation initiation factor 3 subunit G OS=Brugia
malayi GN=Bm1_08615 PE=3 SV=1
Length = 287
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%)
Query: 98 VGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 157
V NLP D +L LF T G V V + DK T + +GF FVT + EAA Q+ NG
Sbjct: 212 VTNLPEECDEMELRALFGTVGTVNRVFIAKDKHTNKPKGFAFVTFEHRSQTEAAIQKLNG 271
Query: 158 YVSNKL 163
Y + L
Sbjct: 272 YKLDHL 277
>sp|Q3ZC34|RBMS2_BOVIN RNA-binding motif, single-stranded-interacting protein 2 OS=Bos
taurus GN=RBMS2 PE=2 SV=1
Length = 407
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155
L++ NLP S+D +L G+ + G V ++ D +G SRG GF M S E+ EA F
Sbjct: 137 LYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGTSRGVGFARMESTEKCEAIITHF 195
Query: 156 NG 157
NG
Sbjct: 196 NG 197
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAA 151
L++ L S L L ++ G + + I DK T + +G+GFV S + A
Sbjct: 58 LYIRGLQPSTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKA 113
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154
KLFVG L + D + L F + G V VI D+ TGRSRGFGFV+ S + A ++
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 155 FNG 157
+G
Sbjct: 96 MDG 98
>sp|Q15434|RBMS2_HUMAN RNA-binding motif, single-stranded-interacting protein 2 OS=Homo
sapiens GN=RBMS2 PE=1 SV=1
Length = 407
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155
L++ NLP S+D +L G+ + G V ++ D +G SRG GF M S E+ EA F
Sbjct: 137 LYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGTSRGVGFARMESTEKCEAIITHF 195
Query: 156 NG 157
NG
Sbjct: 196 NG 197
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAA 151
L++ L L L + G + + I DK T + +G+GFV S + A
Sbjct: 58 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKA 113
>sp|Q8VC70|RBMS2_MOUSE RNA-binding motif, single-stranded-interacting protein 2 OS=Mus
musculus GN=Rbms2 PE=2 SV=1
Length = 383
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155
L++ NLP S+D +L G+ + G V ++ D +G SRG GF M S E+ EA F
Sbjct: 139 LYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGASRGVGFARMESTEKCEAIITHF 197
Query: 156 NG 157
NG
Sbjct: 198 NG 199
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 96 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAA 151
L++ L L L + G + + I DK T + +G+GFV S + A
Sbjct: 60 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKA 115
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 34/57 (59%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAA 151
KLF+G L F L FE G + V+ D T RSRGFGFVT ++VEEV+AA
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVE 149
K+FVG + + L FE G +E++E++ D+ +G+ RGF FVT + V+
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEA 150
S + KLFVG L F + L +F G + V V+ D+ T RSRGFGFVT ++++ +
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 151 AAQQFNG 157
A NG
Sbjct: 63 AMMAMNG 69
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEA 150
S + KLFVG L F + L +F G + V V+ D+ T RSRGFGFVT ++++ +
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 151 AAQQFNG 157
A NG
Sbjct: 63 AMMAMNG 69
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 34/57 (59%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAA 151
KLF+G L F L FE G + V+ D T RSRGFGFVT ++VEEV+AA
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVE 149
K+FVG + + L FE G +E++E++ D+ +G+ RGF FVT + V+
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 153
K+FVG + +S D L F G V ++I D+ TGRSRGF FVT +S EE A Q
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 34/57 (59%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAA 151
KLF+G L F L FE G + V+ D T RSRGFGFVT ++VEEV+AA
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVE 149
K+FVG + + L FE G +E++E++ D+ +G+ RGF FVT + V+
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 34/57 (59%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAA 151
KLF+G L F L FE G + V+ D T RSRGFGFVT ++VEEV+AA
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVE 149
K+FVG + + L FE G +E++E++ D+ +G+ RGF FVT + V+
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 34/57 (59%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAA 151
KLF+G L F L FE G + V+ D T RSRGFGFVT ++VEEV+AA
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVE 149
K+FVG + + L FE G +E++E++ D+ +G+ RGF FVT + V+
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 34/57 (59%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAA 151
KLF+G L F L FE G + V+ D T RSRGFGFVT ++VEEV+AA
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVE 149
K+FVG + + L FE G +E++E++ D+ +G+ RGF FVT + V+
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEA 150
S + KLFVG L F + L +F G + V V+ D+ T RSRGFGFVT ++++ +
Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 151 AAQQFNG 157
A NG
Sbjct: 63 AMMAMNG 69
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,978,293
Number of Sequences: 539616
Number of extensions: 2199938
Number of successful extensions: 7920
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 203
Number of HSP's that attempted gapping in prelim test: 6463
Number of HSP's gapped (non-prelim): 1443
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)