Query 030975
Match_columns 168
No_of_seqs 244 out of 1434
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:22:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 1.9E-20 4.2E-25 135.2 11.0 80 89-168 30-109 (144)
2 PF00076 RRM_1: RNA recognitio 99.8 6.8E-19 1.5E-23 111.0 9.7 70 96-166 1-70 (70)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 7.2E-19 1.6E-23 143.2 10.5 77 91-167 267-343 (352)
4 KOG0149 Predicted RNA-binding 99.8 9.4E-19 2E-23 132.3 7.7 75 92-167 11-85 (247)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.6E-18 5.6E-23 139.9 10.3 76 92-167 2-77 (352)
6 TIGR01659 sex-lethal sex-letha 99.8 3.9E-18 8.5E-23 139.0 10.9 80 88-167 102-181 (346)
7 PF14259 RRM_6: RNA recognitio 99.7 4.6E-17 9.9E-22 103.1 9.5 70 96-166 1-70 (70)
8 TIGR01645 half-pint poly-U bin 99.7 1.7E-17 3.7E-22 142.6 9.2 80 89-168 103-182 (612)
9 KOG0125 Ataxin 2-binding prote 99.7 1.9E-17 4E-22 130.4 8.4 82 84-167 87-168 (376)
10 KOG0121 Nuclear cap-binding pr 99.7 4.6E-17 9.9E-22 112.8 6.9 79 89-167 32-110 (153)
11 TIGR01645 half-pint poly-U bin 99.7 1E-16 2.2E-21 137.9 10.3 77 92-168 203-279 (612)
12 TIGR01659 sex-lethal sex-letha 99.7 1.3E-16 2.8E-21 130.1 9.7 76 92-167 192-269 (346)
13 KOG0122 Translation initiation 99.7 2E-16 4.4E-21 120.2 8.9 79 89-167 185-263 (270)
14 KOG0113 U1 small nuclear ribon 99.7 5.3E-16 1.1E-20 120.9 9.8 77 91-167 99-175 (335)
15 PLN03120 nucleic acid binding 99.7 6.7E-16 1.4E-20 119.9 9.7 71 93-167 4-74 (260)
16 KOG4207 Predicted splicing fac 99.7 2.4E-16 5.3E-21 117.4 6.9 79 89-167 9-87 (256)
17 smart00362 RRM_2 RNA recogniti 99.7 1.4E-15 2.9E-20 95.0 9.2 72 95-168 1-72 (72)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.6 1E-15 2.2E-20 130.4 11.1 78 91-168 293-370 (509)
19 TIGR01628 PABP-1234 polyadenyl 99.6 8.1E-16 1.8E-20 132.7 10.5 73 95-167 2-74 (562)
20 TIGR01622 SF-CC1 splicing fact 99.6 1.5E-15 3.1E-20 127.9 10.8 78 90-168 86-163 (457)
21 TIGR01648 hnRNP-R-Q heterogene 99.6 1.3E-15 2.9E-20 130.6 10.4 76 91-167 56-132 (578)
22 PLN03213 repressor of silencin 99.6 1.1E-15 2.5E-20 126.1 9.5 73 91-167 8-82 (759)
23 TIGR01622 SF-CC1 splicing fact 99.6 1.6E-15 3.6E-20 127.6 10.0 75 93-167 186-260 (457)
24 KOG0126 Predicted RNA-binding 99.6 3.2E-17 7E-22 119.8 -0.5 77 91-167 33-109 (219)
25 KOG0131 Splicing factor 3b, su 99.6 4.6E-16 1E-20 113.7 5.5 80 89-168 5-84 (203)
26 smart00360 RRM RNA recognition 99.6 3.8E-15 8.1E-20 92.6 8.5 71 98-168 1-71 (71)
27 KOG0117 Heterogeneous nuclear 99.6 2E-15 4.4E-20 123.1 9.1 79 89-167 79-158 (506)
28 PLN03121 nucleic acid binding 99.6 3.3E-15 7.2E-20 114.5 9.7 72 92-167 4-75 (243)
29 KOG0148 Apoptosis-promoting RN 99.6 1.5E-15 3.2E-20 117.1 7.5 77 91-167 60-136 (321)
30 COG0724 RNA-binding proteins ( 99.6 3.4E-15 7.3E-20 115.1 9.7 76 93-168 115-190 (306)
31 TIGR01628 PABP-1234 polyadenyl 99.6 3.3E-15 7.2E-20 129.0 10.1 78 90-168 282-359 (562)
32 KOG0107 Alternative splicing f 99.6 6E-15 1.3E-19 107.3 6.9 71 92-167 9-79 (195)
33 KOG0108 mRNA cleavage and poly 99.6 5.3E-15 1.1E-19 122.9 7.5 74 94-167 19-92 (435)
34 KOG0130 RNA-binding protein RB 99.6 7.4E-15 1.6E-19 102.8 6.6 81 87-167 66-146 (170)
35 KOG0114 Predicted RNA-binding 99.6 1.7E-14 3.7E-19 96.6 7.8 75 90-167 15-89 (124)
36 cd00590 RRM RRM (RNA recogniti 99.5 6.4E-14 1.4E-18 87.7 9.5 72 95-167 1-72 (74)
37 KOG4212 RNA-binding protein hn 99.5 2.2E-14 4.8E-19 117.0 9.1 77 91-168 42-119 (608)
38 KOG0111 Cyclophilin-type pepti 99.5 3.3E-15 7.1E-20 112.4 3.4 79 89-167 6-84 (298)
39 KOG0147 Transcriptional coacti 99.5 7.6E-15 1.6E-19 122.3 5.4 73 95-167 280-352 (549)
40 KOG0148 Apoptosis-promoting RN 99.5 3.7E-14 7.9E-19 109.5 8.5 75 87-167 158-232 (321)
41 KOG0145 RNA-binding protein EL 99.5 5.9E-14 1.3E-18 108.0 9.2 78 90-167 275-352 (360)
42 smart00361 RRM_1 RNA recogniti 99.5 9E-14 2E-18 88.4 8.0 61 107-167 2-69 (70)
43 KOG0117 Heterogeneous nuclear 99.5 3.6E-14 7.8E-19 115.9 7.2 88 69-167 238-325 (506)
44 KOG0127 Nucleolar protein fibr 99.5 1.1E-13 2.3E-18 115.5 9.9 79 89-167 288-372 (678)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 1.1E-13 2.3E-18 117.8 10.1 72 91-167 273-345 (481)
46 KOG0145 RNA-binding protein EL 99.5 7.5E-14 1.6E-18 107.5 8.1 77 91-167 39-115 (360)
47 KOG0124 Polypyrimidine tract-b 99.5 2.3E-14 4.9E-19 114.8 4.6 76 92-167 112-187 (544)
48 KOG0144 RNA-binding protein CU 99.5 9.5E-14 2.1E-18 113.0 7.5 69 91-159 32-100 (510)
49 TIGR01648 hnRNP-R-Q heterogene 99.5 3E-13 6.5E-18 116.3 10.0 69 91-167 231-301 (578)
50 KOG0105 Alternative splicing f 99.4 1.3E-13 2.9E-18 101.3 5.7 74 91-167 4-77 (241)
51 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 6.5E-13 1.4E-17 112.9 9.3 69 93-167 2-72 (481)
52 KOG0144 RNA-binding protein CU 99.4 1.3E-13 2.9E-18 112.2 4.3 77 91-168 122-201 (510)
53 KOG0146 RNA-binding protein ET 99.4 3.6E-13 7.9E-18 104.1 6.0 79 89-167 281-359 (371)
54 KOG0109 RNA-binding protein LA 99.4 3.6E-13 7.9E-18 105.0 4.7 67 94-168 3-69 (346)
55 KOG0127 Nucleolar protein fibr 99.4 2E-12 4.3E-17 108.1 7.8 75 92-167 116-190 (678)
56 PF13893 RRM_5: RNA recognitio 99.3 5E-12 1.1E-16 76.6 7.0 53 110-167 1-53 (56)
57 KOG4208 Nucleolar RNA-binding 99.3 3.6E-12 7.7E-17 95.1 7.2 79 89-167 45-124 (214)
58 KOG0131 Splicing factor 3b, su 99.3 3.1E-12 6.8E-17 93.7 5.5 81 87-167 90-171 (203)
59 TIGR01642 U2AF_lg U2 snRNP aux 99.3 8.2E-12 1.8E-16 106.5 8.9 74 88-168 170-255 (509)
60 KOG0415 Predicted peptidyl pro 99.3 1E-11 2.3E-16 99.3 7.1 79 89-167 235-313 (479)
61 KOG0124 Polypyrimidine tract-b 99.2 1.4E-11 3.1E-16 98.9 6.6 75 93-167 210-284 (544)
62 KOG0123 Polyadenylate-binding 99.2 2.3E-11 5E-16 100.1 8.0 69 96-167 79-147 (369)
63 KOG4205 RNA-binding protein mu 99.2 6.7E-12 1.4E-16 100.6 4.1 76 92-168 5-80 (311)
64 KOG0533 RRM motif-containing p 99.2 7.3E-11 1.6E-15 91.4 8.3 76 91-167 81-156 (243)
65 KOG4205 RNA-binding protein mu 99.2 6.7E-11 1.4E-15 94.8 7.1 76 92-168 96-171 (311)
66 KOG4206 Spliceosomal protein s 99.2 1.3E-10 2.8E-15 87.9 8.1 74 91-167 7-84 (221)
67 KOG4661 Hsp27-ERE-TATA-binding 99.2 1.2E-10 2.5E-15 98.3 7.8 78 90-167 402-479 (940)
68 KOG0123 Polyadenylate-binding 99.1 1.5E-10 3.3E-15 95.2 7.4 68 94-167 2-69 (369)
69 KOG0226 RNA-binding proteins [ 99.1 9.6E-11 2.1E-15 90.0 5.7 77 91-167 188-264 (290)
70 KOG0132 RNA polymerase II C-te 99.1 1.1E-10 2.4E-15 101.0 6.7 70 93-168 421-490 (894)
71 KOG0146 RNA-binding protein ET 99.1 8.9E-11 1.9E-15 91.0 5.4 68 91-159 17-84 (371)
72 KOG0153 Predicted RNA-binding 99.1 2.5E-10 5.5E-15 91.0 7.1 73 90-168 225-298 (377)
73 KOG4212 RNA-binding protein hn 99.1 2E-10 4.4E-15 94.1 6.2 75 89-168 532-606 (608)
74 KOG0110 RNA-binding protein (R 99.1 4E-10 8.6E-15 96.8 7.6 76 93-168 515-593 (725)
75 KOG4209 Splicing factor RNPS1, 99.1 2.6E-10 5.5E-15 88.2 5.5 78 89-167 97-174 (231)
76 KOG0109 RNA-binding protein LA 99.0 2.7E-10 5.8E-15 89.1 4.5 70 90-167 75-144 (346)
77 KOG0110 RNA-binding protein (R 99.0 5.4E-10 1.2E-14 96.0 4.9 74 93-166 613-686 (725)
78 KOG4454 RNA binding protein (R 98.9 4.6E-10 9.9E-15 84.7 2.4 77 90-168 6-82 (267)
79 KOG4660 Protein Mei2, essentia 98.9 1.2E-09 2.7E-14 91.6 5.0 72 90-166 72-143 (549)
80 KOG0116 RasGAP SH3 binding pro 98.9 3.2E-09 7E-14 88.2 6.9 79 89-168 284-362 (419)
81 PF04059 RRM_2: RNA recognitio 98.9 1.7E-08 3.6E-13 67.9 8.9 70 93-162 1-72 (97)
82 KOG1548 Transcription elongati 98.9 8.7E-09 1.9E-13 82.3 8.4 77 90-167 131-215 (382)
83 KOG0151 Predicted splicing reg 98.9 3.5E-09 7.7E-14 91.2 6.5 78 89-166 170-250 (877)
84 KOG1457 RNA binding protein (c 98.7 1.2E-07 2.6E-12 72.0 8.2 73 90-162 31-104 (284)
85 KOG0106 Alternative splicing f 98.7 1.6E-08 3.5E-13 77.0 3.5 64 94-165 2-65 (216)
86 KOG4211 Splicing factor hnRNP- 98.6 1.1E-07 2.3E-12 79.2 7.6 74 90-167 7-80 (510)
87 KOG0120 Splicing factor U2AF, 98.5 9.4E-08 2E-12 80.7 4.2 80 88-167 284-363 (500)
88 KOG1995 Conserved Zn-finger pr 98.5 2.8E-07 6.1E-12 74.1 5.6 78 90-167 63-148 (351)
89 KOG0147 Transcriptional coacti 98.4 8.4E-08 1.8E-12 80.7 1.5 79 89-168 175-253 (549)
90 PF11608 Limkain-b1: Limkain b 98.4 1.8E-06 3.8E-11 56.1 7.0 64 94-167 3-71 (90)
91 KOG1190 Polypyrimidine tract-b 98.4 1.7E-06 3.8E-11 70.8 7.7 70 93-167 297-367 (492)
92 KOG0129 Predicted RNA-binding 98.2 4.5E-06 9.8E-11 70.1 7.5 69 86-154 363-432 (520)
93 KOG4211 Splicing factor hnRNP- 98.2 3.9E-06 8.6E-11 70.1 6.6 75 91-167 101-176 (510)
94 KOG4210 Nuclear localization s 98.2 8.5E-07 1.8E-11 70.8 2.6 75 92-167 183-258 (285)
95 KOG4849 mRNA cleavage factor I 98.1 2.5E-06 5.5E-11 68.7 3.9 75 92-166 79-155 (498)
96 KOG1457 RNA binding protein (c 98.1 3.7E-06 7.9E-11 64.1 4.4 70 88-161 205-274 (284)
97 KOG2314 Translation initiation 98.1 1.6E-05 3.4E-10 67.7 8.0 71 91-162 56-132 (698)
98 KOG4206 Spliceosomal protein s 98.1 2E-05 4.3E-10 60.0 7.7 73 89-166 142-215 (221)
99 KOG0106 Alternative splicing f 98.1 2.5E-06 5.5E-11 65.1 2.8 70 90-167 96-165 (216)
100 COG5175 MOT2 Transcriptional r 98.0 1.1E-05 2.4E-10 64.9 6.1 76 92-167 113-197 (480)
101 PF08777 RRM_3: RNA binding mo 98.0 1.6E-05 3.5E-10 54.3 6.2 59 94-158 2-60 (105)
102 KOG1456 Heterogeneous nuclear 97.9 0.00013 2.9E-09 59.5 10.4 76 88-168 282-358 (494)
103 PF14605 Nup35_RRM_2: Nup53/35 97.8 0.00011 2.3E-09 44.0 5.6 52 94-152 2-53 (53)
104 KOG3152 TBP-binding protein, a 97.8 2.2E-05 4.7E-10 60.9 3.0 73 92-164 73-157 (278)
105 KOG0105 Alternative splicing f 97.7 0.00016 3.4E-09 53.8 7.1 66 89-161 111-176 (241)
106 KOG1548 Transcription elongati 97.7 0.00012 2.7E-09 59.0 6.8 76 87-166 259-345 (382)
107 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00033 7.2E-09 47.4 7.2 71 93-165 6-83 (100)
108 KOG0120 Splicing factor U2AF, 97.6 0.00015 3.3E-09 61.7 6.5 59 109-167 425-486 (500)
109 KOG4307 RNA binding protein RB 97.5 0.00023 4.9E-09 62.2 6.5 73 94-167 868-941 (944)
110 KOG1855 Predicted RNA-binding 97.5 9.5E-05 2.1E-09 61.1 3.7 66 92-157 230-308 (484)
111 KOG1365 RNA-binding protein Fu 97.5 0.00014 3.1E-09 59.5 4.5 74 93-167 280-356 (508)
112 KOG2202 U2 snRNP splicing fact 97.4 5.6E-05 1.2E-09 58.6 1.3 57 109-166 84-141 (260)
113 KOG0129 Predicted RNA-binding 97.4 0.00062 1.3E-08 57.6 7.2 64 91-155 257-326 (520)
114 KOG1365 RNA-binding protein Fu 97.3 0.0004 8.7E-09 56.9 5.2 70 94-165 162-235 (508)
115 PF08952 DUF1866: Domain of un 97.2 0.0023 5E-08 46.0 7.2 71 89-168 23-102 (146)
116 PF10309 DUF2414: Protein of u 97.1 0.0044 9.6E-08 38.1 6.9 55 93-155 5-62 (62)
117 KOG0128 RNA-binding protein SA 97.0 4E-05 8.7E-10 67.8 -3.8 67 91-157 665-731 (881)
118 KOG4676 Splicing factor, argin 96.8 0.0019 4.2E-08 53.1 4.8 74 93-167 7-83 (479)
119 KOG2068 MOT2 transcription fac 96.8 0.00051 1.1E-08 55.2 1.3 75 92-166 76-156 (327)
120 KOG0112 Large RNA-binding prot 96.8 0.0015 3.3E-08 58.5 4.2 69 89-163 451-519 (975)
121 PF07576 BRAP2: BRCA1-associat 96.7 0.032 7E-07 38.4 9.5 68 93-162 13-81 (110)
122 KOG4285 Mitotic phosphoprotein 96.6 0.023 4.9E-07 45.4 9.3 65 93-165 197-261 (350)
123 KOG1996 mRNA splicing factor [ 96.6 0.0077 1.7E-07 47.9 6.5 59 108-166 301-360 (378)
124 KOG0115 RNA-binding protein p5 96.6 0.0031 6.8E-08 49.1 4.2 63 94-157 32-94 (275)
125 KOG1190 Polypyrimidine tract-b 96.6 0.0058 1.3E-07 50.6 5.7 69 91-163 412-480 (492)
126 KOG0128 RNA-binding protein SA 96.5 0.00096 2.1E-08 59.4 1.2 68 93-161 736-803 (881)
127 KOG2193 IGF-II mRNA-binding pr 96.5 0.0026 5.7E-08 52.9 3.2 67 94-166 2-69 (584)
128 KOG4660 Protein Mei2, essentia 96.4 0.0051 1.1E-07 52.6 4.6 68 94-161 389-457 (549)
129 KOG2416 Acinus (induces apopto 96.4 0.0035 7.5E-08 54.1 3.4 65 90-160 441-506 (718)
130 PF08675 RNA_bind: RNA binding 96.3 0.034 7.4E-07 36.2 7.2 54 94-156 10-63 (87)
131 KOG4307 RNA binding protein RB 96.2 0.0021 4.5E-08 56.4 1.5 75 92-167 433-508 (944)
132 PF03467 Smg4_UPF3: Smg-4/UPF3 96.2 0.0087 1.9E-07 44.6 4.4 72 91-162 5-82 (176)
133 KOG0112 Large RNA-binding prot 95.9 0.0018 3.8E-08 58.1 -0.4 74 88-162 367-440 (975)
134 KOG2253 U1 snRNP complex, subu 95.9 0.012 2.7E-07 51.3 4.6 68 91-167 38-105 (668)
135 KOG1456 Heterogeneous nuclear 95.7 0.058 1.3E-06 44.4 7.7 69 89-162 116-186 (494)
136 KOG2591 c-Mpl binding protein, 95.3 0.045 9.8E-07 47.1 5.9 69 91-166 173-245 (684)
137 KOG4210 Nuclear localization s 95.0 0.013 2.7E-07 47.0 1.7 75 91-165 86-160 (285)
138 PF04847 Calcipressin: Calcipr 94.4 0.14 3.1E-06 38.4 5.9 56 106-167 8-65 (184)
139 KOG2135 Proteins containing th 94.0 0.025 5.4E-07 47.7 1.3 67 94-167 373-440 (526)
140 PF11767 SET_assoc: Histone ly 93.6 0.39 8.5E-06 29.9 5.8 54 104-166 11-64 (66)
141 KOG4410 5-formyltetrahydrofola 93.0 1.1 2.5E-05 35.8 8.8 49 91-145 328-377 (396)
142 PF03880 DbpA: DbpA RNA bindin 92.3 0.73 1.6E-05 29.1 5.9 57 102-167 10-71 (74)
143 KOG0804 Cytoplasmic Zn-finger 91.5 0.83 1.8E-05 38.6 6.9 68 93-162 74-142 (493)
144 PF15023 DUF4523: Protein of u 91.1 0.49 1.1E-05 34.1 4.5 60 91-157 84-147 (166)
145 KOG4454 RNA binding protein (R 89.6 0.084 1.8E-06 40.6 -0.4 71 89-160 76-150 (267)
146 KOG4676 Splicing factor, argin 86.9 0.11 2.3E-06 43.2 -1.5 64 93-161 151-214 (479)
147 KOG2318 Uncharacterized conser 85.9 5.9 0.00013 34.8 8.3 74 90-163 171-296 (650)
148 KOG4483 Uncharacterized conser 80.9 4.2 9.1E-05 34.2 5.3 61 93-161 391-452 (528)
149 KOG4574 RNA-binding protein (c 78.5 1.1 2.4E-05 40.8 1.4 59 96-160 301-359 (1007)
150 COG0724 RNA-binding proteins ( 78.4 4.3 9.2E-05 30.5 4.5 74 88-161 220-293 (306)
151 PF03468 XS: XS domain; Inter 75.1 11 0.00023 26.1 5.3 45 106-153 30-75 (116)
152 PF15513 DUF4651: Domain of un 63.1 22 0.00048 21.8 4.2 17 108-124 9-25 (62)
153 KOG4019 Calcineurin-mediated s 62.8 4.9 0.00011 30.1 1.6 67 91-163 8-79 (193)
154 PF09707 Cas_Cas2CT1978: CRISP 61.7 23 0.00049 23.2 4.4 48 93-143 25-72 (86)
155 PF10567 Nab6_mRNP_bdg: RNA-re 57.8 24 0.00051 28.5 4.7 56 93-148 15-77 (309)
156 PRK11558 putative ssRNA endonu 56.8 24 0.00052 23.7 3.9 49 93-144 27-75 (97)
157 KOG2193 IGF-II mRNA-binding pr 56.4 0.62 1.3E-05 39.2 -4.4 70 93-166 80-150 (584)
158 PF07292 NID: Nmi/IFP 35 domai 55.5 6.8 0.00015 25.8 1.1 23 92-114 51-73 (88)
159 KOG1295 Nonsense-mediated deca 49.5 27 0.00058 29.2 3.9 69 93-161 7-78 (376)
160 COG0150 PurM Phosphoribosylami 48.4 4.8 0.0001 33.1 -0.5 47 108-158 276-322 (345)
161 PF03439 Spt5-NGN: Early trans 46.2 29 0.00062 22.3 3.0 28 132-159 41-68 (84)
162 KOG2891 Surface glycoprotein [ 45.3 27 0.00059 28.1 3.3 52 91-142 147-215 (445)
163 PRK14548 50S ribosomal protein 45.2 84 0.0018 20.4 5.8 57 95-154 22-80 (84)
164 KOG0226 RNA-binding proteins [ 43.6 29 0.00063 27.6 3.1 75 91-166 94-171 (290)
165 COG5193 LHP1 La protein, small 42.4 11 0.00023 31.7 0.7 61 93-153 174-244 (438)
166 TIGR03636 L23_arch archaeal ri 41.2 94 0.002 19.8 5.9 56 95-153 15-72 (77)
167 KOG2295 C2H2 Zn-finger protein 41.0 3.7 7.9E-05 35.8 -2.3 72 92-163 230-301 (648)
168 PF11411 DNA_ligase_IV: DNA li 40.9 23 0.0005 19.2 1.6 16 103-118 19-34 (36)
169 TIGR01873 cas_CT1978 CRISPR-as 39.1 34 0.00073 22.5 2.5 49 93-144 25-74 (87)
170 COG0030 KsgA Dimethyladenosine 37.6 43 0.00094 26.5 3.3 36 93-128 95-130 (259)
171 KOG4365 Uncharacterized conser 36.7 7.8 0.00017 33.0 -1.0 58 95-153 5-62 (572)
172 PF11823 DUF3343: Protein of u 35.2 41 0.00088 20.8 2.4 29 136-164 2-30 (73)
173 PRK01178 rps24e 30S ribosomal 34.6 1.4E+02 0.0031 20.0 5.1 46 104-150 30-80 (99)
174 KOG4213 RNA-binding protein La 33.5 62 0.0013 24.4 3.4 55 93-153 111-168 (205)
175 KOG4008 rRNA processing protei 32.8 48 0.001 26.0 2.8 35 89-123 36-70 (261)
176 PF00398 RrnaAD: Ribosomal RNA 32.4 57 0.0012 25.5 3.3 31 92-122 96-128 (262)
177 KOG0156 Cytochrome P450 CYP2 s 31.7 1E+02 0.0022 26.8 5.0 59 97-165 36-97 (489)
178 COG5638 Uncharacterized conser 28.5 1.2E+02 0.0025 26.0 4.5 38 90-127 143-185 (622)
179 PF05189 RTC_insert: RNA 3'-te 28.3 1.7E+02 0.0036 19.3 4.6 49 94-142 11-64 (103)
180 PF04026 SpoVG: SpoVG; InterP 28.1 1.4E+02 0.0031 19.3 4.1 25 120-144 3-27 (84)
181 PF14893 PNMA: PNMA 27.1 54 0.0012 27.0 2.4 27 90-116 15-41 (331)
182 PF13046 DUF3906: Protein of u 26.7 86 0.0019 19.3 2.6 32 107-140 32-63 (64)
183 TIGR01743 purR_Bsub pur operon 26.6 1.7E+02 0.0036 23.4 5.0 40 109-155 44-85 (268)
184 PF04127 DFP: DNA / pantothena 25.9 2.8E+02 0.0061 20.6 6.2 59 95-155 20-79 (185)
185 KOG3424 40S ribosomal protein 25.7 2.2E+02 0.0048 19.9 4.8 45 104-149 34-83 (132)
186 PRK13259 regulatory protein Sp 25.4 1.5E+02 0.0033 19.7 3.9 25 120-144 3-27 (94)
187 COG4010 Uncharacterized protei 25.4 2.3E+02 0.0049 20.6 5.0 46 100-155 118-163 (170)
188 PF08442 ATP-grasp_2: ATP-gras 25.1 1.5E+02 0.0033 22.4 4.4 53 106-161 26-81 (202)
189 PRK11901 hypothetical protein; 24.9 2E+02 0.0044 23.6 5.2 62 92-157 244-306 (327)
190 PRK00274 ksgA 16S ribosomal RN 24.7 88 0.0019 24.6 3.2 22 95-116 107-128 (272)
191 PRK09213 pur operon repressor; 24.7 1.8E+02 0.0039 23.2 4.9 41 109-156 46-88 (271)
192 cd00027 BRCT Breast Cancer Sup 23.5 1.5E+02 0.0032 16.7 3.4 26 94-119 2-27 (72)
193 PRK15464 cold shock-like prote 23.1 43 0.00094 20.9 0.9 11 134-144 15-25 (70)
194 smart00596 PRE_C2HC PRE_C2HC d 23.0 97 0.0021 19.4 2.4 38 108-145 2-40 (69)
195 COG5353 Uncharacterized protei 22.7 3.1E+02 0.0067 20.0 6.9 55 93-147 87-154 (161)
196 COG5236 Uncharacterized conser 22.6 2.9E+02 0.0063 23.2 5.7 50 108-165 265-314 (493)
197 PF08206 OB_RNB: Ribonuclease 22.5 61 0.0013 19.1 1.4 12 133-144 6-17 (58)
198 PF07530 PRE_C2HC: Associated 22.0 1.2E+02 0.0026 18.7 2.7 40 108-147 2-42 (68)
199 PRK15463 cold shock-like prote 21.5 51 0.0011 20.5 1.0 11 134-144 15-25 (70)
200 PRK09937 stationary phase/star 21.4 52 0.0011 20.7 1.0 11 133-143 11-21 (74)
201 PRK10905 cell division protein 20.8 3.1E+02 0.0068 22.6 5.5 62 92-157 246-308 (328)
202 PRK08559 nusG transcription an 20.7 1.2E+02 0.0026 21.8 2.9 34 120-158 36-69 (153)
203 PF13689 DUF4154: Domain of un 20.7 1.3E+02 0.0028 21.2 3.1 32 135-167 26-57 (145)
204 PRK09507 cspE cold shock prote 20.6 51 0.0011 20.3 0.9 11 134-144 14-24 (69)
205 PRK11230 glycolate oxidase sub 20.5 4.1E+02 0.0089 23.1 6.7 49 107-156 203-255 (499)
206 PRK14998 cold shock-like prote 20.4 56 0.0012 20.5 1.0 12 133-144 11-22 (73)
207 PTZ00338 dimethyladenosine tra 20.1 98 0.0021 24.9 2.6 27 95-121 103-129 (294)
208 PF15063 TC1: Thyroid cancer p 20.0 67 0.0014 20.5 1.3 49 95-155 27-78 (79)
209 TIGR00755 ksgA dimethyladenosi 20.0 1.5E+02 0.0033 22.9 3.6 24 95-118 96-119 (253)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.84 E-value=1.9e-20 Score=135.18 Aligned_cols=80 Identities=35% Similarity=0.492 Sum_probs=75.7
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
.....++|||+||+++++|++|+++|++||.|..+.++.|+.+++++|||||+|.+.++|++|++.||+..|+|+.|+++
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34557799999999999999999999999999999999999999999999999999999999999999999999999873
No 2
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.80 E-value=6.8e-19 Score=110.97 Aligned_cols=70 Identities=34% Similarity=0.625 Sum_probs=67.6
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccce
Q 030975 96 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 166 (168)
Q Consensus 96 lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~ 166 (168)
|||+|||.++++++|+++|++||.|..+.+..+ .++..+|||||+|.+.++|++|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5899999999999999999999999999999999986
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.79 E-value=7.2e-19 Score=143.19 Aligned_cols=77 Identities=31% Similarity=0.467 Sum_probs=73.6
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
..+.+|||+|||+++++++|+++|++||.|.+++|++|+.||.++|||||+|.+.++|.+|++.|||+.++||.|++
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V 343 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQV 343 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999986
No 4
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.77 E-value=9.4e-19 Score=132.30 Aligned_cols=75 Identities=32% Similarity=0.482 Sum_probs=68.6
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.-++||||||+|.+..+.|+++|++||+|.+..|+.|+.||++||||||+|.+.+.|.+|++. -.-+||||+..+
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNc 85 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANC 85 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCccccccccc
Confidence 357899999999999999999999999999999999999999999999999999999999984 456888887543
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.77 E-value=2.6e-18 Score=139.94 Aligned_cols=76 Identities=32% Similarity=0.536 Sum_probs=73.3
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...+|||+|||.+++|++|+++|+.||.|.+|+|++|+.+|+++|||||+|.+.++|++|++.|||..+.|+.|++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEE
Confidence 3679999999999999999999999999999999999999999999999999999999999999999999999976
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=3.9e-18 Score=138.99 Aligned_cols=80 Identities=26% Similarity=0.397 Sum_probs=75.8
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 88 ~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
......++|||+|||++++|++|+++|+.||.|+.|+|++|..+++++|||||+|.+.++|++|++.|||..+.+++|++
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999976
No 7
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.73 E-value=4.6e-17 Score=103.15 Aligned_cols=70 Identities=36% Similarity=0.548 Sum_probs=65.4
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccce
Q 030975 96 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 166 (168)
Q Consensus 96 lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~ 166 (168)
|||+|||+++++++|+++|+.+|.|..+.+..++. |..+|+|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999986 99999999999999999999999999999999875
No 8
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.72 E-value=1.7e-17 Score=142.63 Aligned_cols=80 Identities=23% Similarity=0.449 Sum_probs=75.7
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
.....++||||||++++++++|+++|..||.|.+|++++|+.+|+++|||||+|.+.++|++|++.|||..++||.|+++
T Consensus 103 a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 103 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred hhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999873
No 9
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.72 E-value=1.9e-17 Score=130.44 Aligned_cols=82 Identities=30% Similarity=0.525 Sum_probs=75.6
Q ss_pred cCCCCCCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc
Q 030975 84 DEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKL 163 (168)
Q Consensus 84 ~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr 163 (168)
.......+..++|+|.|+|+...|.||+.+|++||.|.+|+|+.+. ..+||||||+|++.++|++|-++|||..+.||
T Consensus 87 st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGR 164 (376)
T KOG0125|consen 87 STNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGR 164 (376)
T ss_pred CCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeece
Confidence 3444566778899999999999999999999999999999999984 67899999999999999999999999999999
Q ss_pred ccee
Q 030975 164 SPKK 167 (168)
Q Consensus 164 ~i~~ 167 (168)
+|+|
T Consensus 165 kIEV 168 (376)
T KOG0125|consen 165 KIEV 168 (376)
T ss_pred EEEE
Confidence 9987
No 10
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=4.6e-17 Score=112.82 Aligned_cols=79 Identities=23% Similarity=0.375 Sum_probs=74.8
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.....++||||||.+.++|++|.++|+++|.|+.|.|-.|+.+....|||||+|.+.++|+.|++.++|..++.++|++
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 3455789999999999999999999999999999999999999999999999999999999999999999999999975
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.69 E-value=1e-16 Score=137.94 Aligned_cols=77 Identities=12% Similarity=0.250 Sum_probs=73.8
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
..++|||+||+.++++++|+++|+.||.|..+++.+|+.+|+++|||||+|.+.++|.+|++.|||+.++|+.|++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~ 279 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 279 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45799999999999999999999999999999999999899999999999999999999999999999999999873
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.69 E-value=1.3e-16 Score=130.12 Aligned_cols=76 Identities=29% Similarity=0.486 Sum_probs=71.1
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--cccee
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK--LSPKK 167 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~g--r~i~~ 167 (168)
..++|||+|||.+++|++|+++|++||.|+.++|++|+.+++++|||||+|.+.++|++|++.||+..++| ++|++
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999877 45655
No 13
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2e-16 Score=120.24 Aligned_cols=79 Identities=30% Similarity=0.419 Sum_probs=74.3
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
..++..+|-|.||+.+++|++|+++|..||.|..|.|.+|++||.++|||||+|.++++|.+|++.|||+-++.-.|++
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 4456789999999999999999999999999999999999999999999999999999999999999999998877765
No 14
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=5.3e-16 Score=120.93 Aligned_cols=77 Identities=26% Similarity=0.465 Sum_probs=74.5
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
++-+||||+-|+.+++|..|+..|+.||.|+.|.|++|+.||+++|||||+|.+..+..+|.+.-+|..|+|+.|.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999875
No 15
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.65 E-value=6.7e-16 Score=119.87 Aligned_cols=71 Identities=18% Similarity=0.257 Sum_probs=66.6
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.++|||+||++.+++++|+++|+.||.|++|.|+.|+. .+|||||+|.+.++|+.|+. |||..|+|+.|++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~V 74 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTI 74 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEE
Confidence 57999999999999999999999999999999998863 57999999999999999996 9999999999876
No 16
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.65 E-value=2.4e-16 Score=117.36 Aligned_cols=79 Identities=28% Similarity=0.382 Sum_probs=74.9
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
+.+.-..|.|-||.+.++.++|+.+|++||.|-+|.|++|+.|+.++|||||.|++..+|+.|++.|+|.+++|++|+|
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 4445678999999999999999999999999999999999999999999999999999999999999999999999976
No 17
>smart00362 RRM_2 RNA recognition motif.
Probab=99.65 E-value=1.4e-15 Score=95.00 Aligned_cols=72 Identities=38% Similarity=0.583 Sum_probs=67.9
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 95 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
+|||+|||.++++++|+++|..||.+..+.+..+. +.++|+|||+|.+.++|++|++.++|..++|+.|+++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 7889999999999999999999999999999998875
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.65 E-value=1e-15 Score=130.43 Aligned_cols=78 Identities=23% Similarity=0.443 Sum_probs=74.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...++|||+|||..+++++|+++|+.||.|..+.++++..+|.++|||||+|.+.++|+.|++.|||..|+|+.|+++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~ 370 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQ 370 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 456899999999999999999999999999999999999899999999999999999999999999999999998763
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.65 E-value=8.1e-16 Score=132.75 Aligned_cols=73 Identities=33% Similarity=0.416 Sum_probs=71.1
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 95 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
+|||||||.+++|++|+++|++||.|.+|+|++|..|++++|||||+|.+.++|++|++.+|+..++|++|++
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i 74 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRI 74 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEe
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999876
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.64 E-value=1.5e-15 Score=127.95 Aligned_cols=78 Identities=26% Similarity=0.319 Sum_probs=73.5
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
....++|||+|||..+++++|+++|+.||.|..|.++.|+.+|+++|||||+|.+.++|++|++ |+|..+.|++|.++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 3457899999999999999999999999999999999999999999999999999999999997 99999999998763
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.64 E-value=1.3e-15 Score=130.64 Aligned_cols=76 Identities=29% Similarity=0.500 Sum_probs=70.2
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-Ccccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN-KLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~-gr~i~~ 167 (168)
...++|||+|||.+++|++|+++|++||.|.+++|++| .+|+++|||||+|.+.++|++|++.||+.++. |+.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 35689999999999999999999999999999999999 69999999999999999999999999999885 666543
No 22
>PLN03213 repressor of silencing 3; Provisional
Probab=99.63 E-value=1.1e-15 Score=126.15 Aligned_cols=73 Identities=26% Similarity=0.444 Sum_probs=67.4
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCH--HHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSV--EEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~--~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
....+||||||.+.+++++|+..|..||.|..|.|+ +++| ||||||+|... .++.+|+..|||.+|.|+.|++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 346799999999999999999999999999999999 4467 99999999977 7899999999999999999986
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.63 E-value=1.6e-15 Score=127.62 Aligned_cols=75 Identities=39% Similarity=0.632 Sum_probs=72.9
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.++|||+|||..+++++|+++|+.||.|..|.++.+..+|+++|||||+|.+.++|.+|++.|||..|+|+.|++
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v 260 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKV 260 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEE
Confidence 689999999999999999999999999999999999989999999999999999999999999999999999986
No 24
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=3.2e-17 Score=119.81 Aligned_cols=77 Identities=22% Similarity=0.442 Sum_probs=74.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.+..-|||||||++.+|.+|-..|++||+|..|.+++|+.||+++||||+.|.+..+--.|+..|||..|.||.|+|
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999986
No 25
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.62 E-value=4.6e-16 Score=113.70 Aligned_cols=80 Identities=28% Similarity=0.365 Sum_probs=76.0
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
..+.+.+||||||+..++++.|+++|-+.|.|..+++++|+.+...+||||++|.++++|+=|++.||...+.||+|+++
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999873
No 26
>smart00360 RRM RNA recognition motif.
Probab=99.62 E-value=3.8e-15 Score=92.59 Aligned_cols=71 Identities=41% Similarity=0.597 Sum_probs=67.2
Q ss_pred EeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 98 VGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 98 V~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
|+|||.++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|++.+++..++|+.+++.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988789999999999999999999999999999999998763
No 27
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=2e-15 Score=123.08 Aligned_cols=79 Identities=28% Similarity=0.461 Sum_probs=73.9
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-Ccccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN-KLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~-gr~i~~ 167 (168)
....++.||||.||.++.|++|.-+|++.|.|-+++|+.|+.+|.+||||||+|.+.++|++|++.||+++|. |+.|++
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 3466899999999999999999999999999999999999999999999999999999999999999999886 777764
No 28
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.62 E-value=3.3e-15 Score=114.47 Aligned_cols=72 Identities=19% Similarity=0.190 Sum_probs=66.6
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.+.+|||+||++.+++++|+++|+.||.|.+|+|++|. ..+|||||+|.++++|+.|+. |+|..|.|+.|.+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~I 75 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCI 75 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEE
Confidence 46899999999999999999999999999999999884 455899999999999999996 9999999999865
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.5e-15 Score=117.14 Aligned_cols=77 Identities=34% Similarity=0.568 Sum_probs=73.6
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
+...-||||.|...++-++|++.|..||+|.+++|++|..|+++||||||.|.+.++|+.||+.|||..|++|.||.
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRT 136 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRT 136 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999973
No 30
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.61 E-value=3.4e-15 Score=115.13 Aligned_cols=76 Identities=38% Similarity=0.620 Sum_probs=73.5
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
..+|||+|||.++++++|+++|..||.|..+.+..|+.+|.++|||||+|.+.++|..|++.++|..+.|+.|++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEee
Confidence 5999999999999999999999999999999999998899999999999999999999999999999999999863
No 31
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.61 E-value=3.3e-15 Score=128.96 Aligned_cols=78 Identities=31% Similarity=0.467 Sum_probs=73.2
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
.....+|||+||+.++++++|+++|+.||.|.+++++.| .+|+++|||||+|.+.++|.+|++.|||..++|++|.++
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~ 359 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVA 359 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEE
Confidence 345678999999999999999999999999999999999 589999999999999999999999999999999999763
No 32
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=6e-15 Score=107.30 Aligned_cols=71 Identities=24% Similarity=0.329 Sum_probs=65.6
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
-.++||||||+..+++.+|...|..||.|..|-|..+ ..|||||+|++..+|+.|+..|+|..|.|..|+|
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rV 79 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRV 79 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEE
Confidence 4789999999999999999999999999999877654 4789999999999999999999999999988876
No 33
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.57 E-value=5.3e-15 Score=122.93 Aligned_cols=74 Identities=32% Similarity=0.591 Sum_probs=72.8
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
+.|||||+|++++|++|..+|+..|.|..++++.|++||+.+||||++|.+.+++++|++.|||.++.||+|++
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v 92 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRV 92 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999986
No 34
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=7.4e-15 Score=102.79 Aligned_cols=81 Identities=17% Similarity=0.265 Sum_probs=75.6
Q ss_pred CCCCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccce
Q 030975 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 166 (168)
Q Consensus 87 ~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~ 166 (168)
.+..-++..|||.|++...+|++|.+.|..||+|+.+.+-.|+.||..+||+.|+|.+.++|++|+..+||..+-|+.|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred e
Q 030975 167 K 167 (168)
Q Consensus 167 ~ 167 (168)
+
T Consensus 146 V 146 (170)
T KOG0130|consen 146 V 146 (170)
T ss_pred E
Confidence 5
No 35
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1.7e-14 Score=96.62 Aligned_cols=75 Identities=23% Similarity=0.414 Sum_probs=68.3
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...++.|||.|||++++.++..++|.+||.|..|+|-..+ ..+|-|||.|++..+|.+|+++|+|+-+.++.+.+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 3457889999999999999999999999999999987654 55899999999999999999999999999998875
No 36
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.55 E-value=6.4e-14 Score=87.75 Aligned_cols=72 Identities=39% Similarity=0.580 Sum_probs=67.2
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 95 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
+|+|+|||.++++++|+++|+.+|.|..+.+..+..+ ..+|+|||+|.+.++|+.|++.+++..++|+.+.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v 72 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRV 72 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4899999999999999999999999999999988744 77999999999999999999999999999999875
No 37
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.55 E-value=2.2e-14 Score=117.01 Aligned_cols=77 Identities=30% Similarity=0.532 Sum_probs=72.4
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhh-ccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFE-TAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~-~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...+.+||.|+|+++.+++|+++|. +-|+|+.|++..|. .|+.+|||.|+|+++|.+++|++.||.+++.||+|++|
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 3456699999999999999999996 58999999999997 89999999999999999999999999999999999987
No 38
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.3e-15 Score=112.40 Aligned_cols=79 Identities=24% Similarity=0.343 Sum_probs=75.4
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.....++||||+|-.+++|.-|...|-.||.|..|.++.|.++++++|||||+|...++|.+|+..||+.++.||.|++
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirV 84 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRV 84 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999999999986
No 39
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.53 E-value=7.6e-15 Score=122.28 Aligned_cols=73 Identities=40% Similarity=0.679 Sum_probs=71.1
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 95 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.||||||+++++|++|+.+|+.||.|+.|.+++|.+||.++|||||+|.+.++|.+|++.|||.+|-|+.|+|
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV 352 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKV 352 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEE
Confidence 3999999999999999999999999999999999999999999999999999999999999999999999986
No 40
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.7e-14 Score=109.51 Aligned_cols=75 Identities=20% Similarity=0.314 Sum_probs=69.4
Q ss_pred CCCCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccce
Q 030975 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 166 (168)
Q Consensus 87 ~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~ 166 (168)
+....++++|||||++..++|++|++.|+.||.|.+|++.++ +||+||.|.+.|.|..||..|||.+|+|..+|
T Consensus 158 NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~Vk 231 (321)
T KOG0148|consen 158 NQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVR 231 (321)
T ss_pred ccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEE
Confidence 345567899999999999999999999999999999999987 58999999999999999999999999999876
Q ss_pred e
Q 030975 167 K 167 (168)
Q Consensus 167 ~ 167 (168)
+
T Consensus 232 C 232 (321)
T KOG0148|consen 232 C 232 (321)
T ss_pred E
Confidence 4
No 41
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=5.9e-14 Score=108.05 Aligned_cols=78 Identities=35% Similarity=0.437 Sum_probs=74.0
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...+..|||-||..+.+|.-|+++|..||.|..|++++|..|.+++|||||.+.+-++|..|+..|||+.+++|.|.+
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQV 352 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 352 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEE
Confidence 345789999999999999999999999999999999999999999999999999999999999999999999998764
No 42
>smart00361 RRM_1 RNA recognition motif.
Probab=99.51 E-value=9e-14 Score=88.37 Aligned_cols=61 Identities=21% Similarity=0.313 Sum_probs=55.6
Q ss_pred HHHHHHHhh----ccCCeeEEE-EeecCCC--CCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 107 SAQLAGLFE----TAGNVEMVE-VIYDKVT--GRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 107 e~~L~~~F~----~~G~i~~v~-l~~~~~t--g~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
+++|+++|. +||.|..+. ++.++.+ ++++|||||+|.+.++|.+|++.|||..++|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999995 7777766 999999999999999999999999999999999875
No 43
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=3.6e-14 Score=115.87 Aligned_cols=88 Identities=26% Similarity=0.326 Sum_probs=75.0
Q ss_pred cccCCccchhhhhcccCCCCCCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHH
Q 030975 69 VAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEV 148 (168)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a 148 (168)
.+...+|+... .+.+++.......|||.||+.+++|+.|+++|++||.|++|+.++| ||||.|.++++|
T Consensus 238 n~~tVdWAep~---~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~da 306 (506)
T KOG0117|consen 238 NAITVDWAEPE---EEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDA 306 (506)
T ss_pred CcceeeccCcc---cCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHH
Confidence 34455676653 3333445667789999999999999999999999999999998866 999999999999
Q ss_pred HHHHHHhCCceeCCcccee
Q 030975 149 EAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 149 ~~Al~~l~g~~~~gr~i~~ 167 (168)
-+|++.+||++|+|..|.+
T Consensus 307 vkAm~~~ngkeldG~~iEv 325 (506)
T KOG0117|consen 307 VKAMKETNGKELDGSPIEV 325 (506)
T ss_pred HHHHHHhcCceecCceEEE
Confidence 9999999999999999865
No 44
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.1e-13 Score=115.53 Aligned_cols=79 Identities=27% Similarity=0.410 Sum_probs=72.3
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh-----CC-ceeCC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF-----NG-YVSNK 162 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l-----~g-~~~~g 162 (168)
+...+.+|||.|||++++|++|+++|.+||.|..+.++.++.||+++|.|||.|.+..+|+.||+.- .| +.|+|
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 3345699999999999999999999999999999999999999999999999999999999999865 34 78999
Q ss_pred cccee
Q 030975 163 LSPKK 167 (168)
Q Consensus 163 r~i~~ 167 (168)
|.|++
T Consensus 368 R~Lkv 372 (678)
T KOG0127|consen 368 RLLKV 372 (678)
T ss_pred cEEee
Confidence 98865
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.50 E-value=1.1e-13 Score=117.76 Aligned_cols=72 Identities=25% Similarity=0.312 Sum_probs=67.3
Q ss_pred CCCCEEEEeCCCC-CCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPF-SVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~-~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
....+|||+||++ .+++++|+++|+.||.|..|++++++ +|||||+|.+.++|+.|++.|||..|+|+.|++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v 345 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRV 345 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEE
Confidence 4678999999997 69999999999999999999999874 699999999999999999999999999999976
No 46
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=7.5e-14 Score=107.47 Aligned_cols=77 Identities=30% Similarity=0.512 Sum_probs=73.2
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
+..+.|.|.-||..+++++++.+|...|+|+.|++++|+.+|++.|||||.|-++++|++|+..|||..+..+.|++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKV 115 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKV 115 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999998876
No 47
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=2.3e-14 Score=114.79 Aligned_cols=76 Identities=24% Similarity=0.465 Sum_probs=73.5
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
--++||||.+.+...|+.|+..|..||.|+.|.+-+|+.|++++||+||+|+-++.|+.|++.|||..++||.|++
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKV 187 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKV 187 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccc
Confidence 3478999999999999999999999999999999999999999999999999999999999999999999999986
No 48
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=9.5e-14 Score=113.05 Aligned_cols=69 Identities=35% Similarity=0.547 Sum_probs=65.4
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV 159 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~ 159 (168)
.+.-++|||.+|..++|.||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+..|+...
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~k 100 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQK 100 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhccc
Confidence 556789999999999999999999999999999999999999999999999999999999999998753
No 49
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.46 E-value=3e-13 Score=116.30 Aligned_cols=69 Identities=25% Similarity=0.302 Sum_probs=64.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhcc--CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETA--GNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~--G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...++|||+||++++++++|+++|+.| |.|++|.++ ++||||+|.+.++|++|++.|||.+|+|+.|++
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V 301 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEV 301 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345789999999999999999999999 999999876 359999999999999999999999999999986
No 50
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=1.3e-13 Score=101.29 Aligned_cols=74 Identities=22% Similarity=0.365 Sum_probs=67.2
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...++|||||||.++.+.+|+++|.+||.|.+|.+... -..-+||||+|++..+|+.|+..-+|+.++|..|++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRV 77 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRV 77 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEE
Confidence 45789999999999999999999999999999988643 345789999999999999999999999999999986
No 51
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.42 E-value=6.5e-13 Score=112.94 Aligned_cols=69 Identities=19% Similarity=0.111 Sum_probs=63.3
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh--CCceeCCcccee
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF--NGYVSNKLSPKK 167 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l--~g~~~~gr~i~~ 167 (168)
.+.|||+|||+++++++|+++|+.||.|..|.++++ +|||||+|.+.++|++|++.+ ++..++|+.|++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v 72 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFF 72 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEE
Confidence 568999999999999999999999999999999853 579999999999999999864 789999999876
No 52
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=1.3e-13 Score=112.22 Aligned_cols=77 Identities=30% Similarity=0.395 Sum_probs=69.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCc-eeCCc--ccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY-VSNKL--SPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~-~~~gr--~i~~ 167 (168)
.++++||||-|+..++|++++++|.+||.|++|.|.+|. -|.+||||||.|.+++.|..|++.|||. .+.|. +|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 458899999999999999999999999999999999997 6999999999999999999999999996 46654 3444
Q ss_pred C
Q 030975 168 K 168 (168)
Q Consensus 168 k 168 (168)
|
T Consensus 201 k 201 (510)
T KOG0144|consen 201 K 201 (510)
T ss_pred E
Confidence 3
No 53
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=3.6e-13 Score=104.06 Aligned_cols=79 Identities=28% Similarity=0.420 Sum_probs=75.4
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...++++|||-.||.+..+.+|-++|-.||.|...++..|+.|..+||||||.|++..+|++||..|||+.|+-+.|++
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999988875
No 54
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.39 E-value=3.6e-13 Score=104.97 Aligned_cols=67 Identities=30% Similarity=0.585 Sum_probs=63.6
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
.++||||||..+++.+|+.+|++||.|.+|.|+++ ||||..++...|+.|++.|+|+.|+|.-|.++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVe 69 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVE 69 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEE
Confidence 47999999999999999999999999999999976 99999999999999999999999999998764
No 55
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=2e-12 Score=108.06 Aligned_cols=75 Identities=28% Similarity=0.469 Sum_probs=69.1
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
+.-+|+|.|||+.+.+.+|+.+|+.||.|.+|.|++.++ |+..|||||+|....+|..|++.|||..|+||+|-+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAV 190 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAV 190 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEE
Confidence 467899999999999999999999999999999998775 555599999999999999999999999999999854
No 56
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.34 E-value=5e-12 Score=76.65 Aligned_cols=53 Identities=38% Similarity=0.553 Sum_probs=47.8
Q ss_pred HHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 110 LAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 110 L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
|+++|++||.|..+.+..+. +|+|||+|.+.++|+.|++.|||..++|+.|++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V 53 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKV 53 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 68899999999999987553 689999999999999999999999999999986
No 57
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.34 E-value=3.6e-12 Score=95.08 Aligned_cols=79 Identities=23% Similarity=0.351 Sum_probs=72.2
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhcc-CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETA-GNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~-G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
......-+||+.+|..+.+.++..+|.+| |.+..+++-+++.||.++|||||+|.+.+.|+-|-+.||+|.+.|+.|.+
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34456679999999999999999999988 77899999999999999999999999999999999999999999998765
No 58
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.31 E-value=3.1e-12 Score=93.74 Aligned_cols=81 Identities=31% Similarity=0.416 Sum_probs=73.2
Q ss_pred CCCCCCCCEEEEeCCCCCCcHHHHHHHhhccCCee-EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccc
Q 030975 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE-MVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 165 (168)
Q Consensus 87 ~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~-~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i 165 (168)
....+.+.++|||||.+.++|..|.+.|+.||.+. .-+++++..||..+|||||.|.+.+.+.+|++.|||+.+..++|
T Consensus 90 ~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~i 169 (203)
T KOG0131|consen 90 QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPI 169 (203)
T ss_pred cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCce
Confidence 34556678999999999999999999999999964 46889999999999999999999999999999999999999988
Q ss_pred ee
Q 030975 166 KK 167 (168)
Q Consensus 166 ~~ 167 (168)
.+
T Consensus 170 tv 171 (203)
T KOG0131|consen 170 TV 171 (203)
T ss_pred EE
Confidence 64
No 59
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.31 E-value=8.2e-12 Score=106.47 Aligned_cols=74 Identities=19% Similarity=0.352 Sum_probs=61.0
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHhhccC------------CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 030975 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAG------------NVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155 (168)
Q Consensus 88 ~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G------------~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l 155 (168)
......++|||||||+.+++++|+++|..++ .|..+. .++.+|||||+|.+.++|+.||+ |
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~------~~~~kg~afVeF~~~e~A~~Al~-l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN------INKEKNFAFLEFRTVEEATFAMA-L 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE------ECCCCCEEEEEeCCHHHHhhhhc-C
Confidence 3445678999999999999999999998752 233333 34568999999999999999995 9
Q ss_pred CCceeCCccceeC
Q 030975 156 NGYVSNKLSPKKK 168 (168)
Q Consensus 156 ~g~~~~gr~i~~k 168 (168)
+|..+.|+.|+++
T Consensus 243 ~g~~~~g~~l~v~ 255 (509)
T TIGR01642 243 DSIIYSNVFLKIR 255 (509)
T ss_pred CCeEeeCceeEec
Confidence 9999999998763
No 60
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1e-11 Score=99.25 Aligned_cols=79 Identities=24% Similarity=0.309 Sum_probs=75.1
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...+...|||.-|.+.++.++|.-+|+.||.|..|.+++|+.||.+..||||+|.+.+++++|.-+|++..|+++.|.|
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 4457789999999999999999999999999999999999999999999999999999999999999999999999875
No 61
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1.4e-11 Score=98.91 Aligned_cols=75 Identities=12% Similarity=0.264 Sum_probs=72.1
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
-.+|||..++.+.+|+||+..|+.||+|..|.+.+++.++.++||||++|.+......|+..||=+.++|..|++
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRV 284 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRV 284 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEec
Confidence 468999999999999999999999999999999999989999999999999999999999999999999999886
No 62
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=2.3e-11 Score=100.07 Aligned_cols=69 Identities=32% Similarity=0.480 Sum_probs=65.8
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 96 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 96 lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
|||.||+.+++..+|.++|+.||.|..|++..+. .| ++|| ||+|.++++|++|++.|||..+.|+.|.+
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~v 147 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYV 147 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEE
Confidence 9999999999999999999999999999999997 44 9999 99999999999999999999999998865
No 63
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.23 E-value=6.7e-12 Score=100.56 Aligned_cols=76 Identities=36% Similarity=0.484 Sum_probs=69.6
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
+.+++|||+|+|+++++.|++.|.+||+|.++.+++|+.+++++||+||+|.+.+...+++. ..-..|+|+.|..|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccce
Confidence 67899999999999999999999999999999999999999999999999999999999886 45677888887654
No 64
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.20 E-value=7.3e-11 Score=91.38 Aligned_cols=76 Identities=33% Similarity=0.491 Sum_probs=71.2
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
....+|+|.||++.|.+++|+++|+.||.++.+.+.+++ .|.+.|.|-|.|...++|.+|++.|+|..++|++++.
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~ 156 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKI 156 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeee
Confidence 334789999999999999999999999999999999998 8999999999999999999999999999999998753
No 65
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.17 E-value=6.7e-11 Score=94.84 Aligned_cols=76 Identities=36% Similarity=0.496 Sum_probs=71.6
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...+||||+|+.+++++++++.|++||.|..+.+++|..+.+.+|||||.|.+++.+++++. ..-..|.|+++.+|
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevk 171 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVK 171 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEe
Confidence 46799999999999999999999999999999999999999999999999999999999997 67889999998876
No 66
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.17 E-value=1.3e-10 Score=87.92 Aligned_cols=74 Identities=23% Similarity=0.371 Sum_probs=66.5
Q ss_pred CCCCEEEEeCCCCCCcHHHHHH----HhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccce
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAG----LFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 166 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~----~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~ 166 (168)
.+..+|||.||+..+..++|+. +|++||.|.+|...+ +.+.+|-|||.|.+.+.|-.|++.|+|+.+.|++++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999988776 999999999987763 679999999999999999999999999999999987
Q ss_pred e
Q 030975 167 K 167 (168)
Q Consensus 167 ~ 167 (168)
+
T Consensus 84 i 84 (221)
T KOG4206|consen 84 I 84 (221)
T ss_pred e
Confidence 5
No 67
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.15 E-value=1.2e-10 Score=98.27 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=72.7
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
..-+++|||.+|...+...+|+.+|++||.|.-.+|+.+..+-..+|||||++.+.++|.+||+.|+..+|.|+.|-|
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISV 479 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISV 479 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeee
Confidence 445789999999999999999999999999999999999778888999999999999999999999999999999854
No 68
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.5e-10 Score=95.24 Aligned_cols=68 Identities=29% Similarity=0.339 Sum_probs=64.7
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
..|||| .+++|.+|++.|+.+|.+..+++++|. | +.|||||.|.+.++|++|++.||...+.|++|++
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~ri 69 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRI 69 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEe
Confidence 358999 899999999999999999999999998 6 9999999999999999999999999999999985
No 69
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.12 E-value=9.6e-11 Score=90.01 Aligned_cols=77 Identities=30% Similarity=0.477 Sum_probs=72.9
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.++.+||+|.|..+++++.|...|.+|-.-...++++|+.||+++|||||.|.+..++.+|++.|+|..++.|+|+-
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 46789999999999999999999999998889999999999999999999999999999999999999999999863
No 70
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.12 E-value=1.1e-10 Score=100.99 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=65.4
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
.+|||||+|+..++|.+|+.+|+.||+|..|.++. ++|||||.+....+|++|+.+|+.+.+.++.|+++
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 48999999999999999999999999999999874 47899999999999999999999999999998764
No 71
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=8.9e-11 Score=90.96 Aligned_cols=68 Identities=35% Similarity=0.503 Sum_probs=63.8
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV 159 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~ 159 (168)
.++++||||-|...-.|+|++.+|..||.|++|.+.+.. .|.+|||+||.|.+..+|+.||..|+|..
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSq 84 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQ 84 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccc
Confidence 367899999999999999999999999999999999987 68999999999999999999999999853
No 72
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=2.5e-10 Score=91.03 Aligned_cols=73 Identities=27% Similarity=0.384 Sum_probs=63.5
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-HhCCceeCCccceeC
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ-QFNGYVSNKLSPKKK 168 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~-~l~g~~~~gr~i~~k 168 (168)
...-.+||||||...++|.+|+++|.+||+|+.+.+... +|+|||+|.+.+.|+.|.+ .+|...|+|+.|+++
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 344689999999889999999999999999999998754 4699999999999999887 456678999998764
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.08 E-value=2e-10 Score=94.14 Aligned_cols=75 Identities=25% Similarity=0.367 Sum_probs=67.9
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
..+..++|||.|||+++|++.|++-|..||.|..+.|+ +.|+++| .|.|.++++|++|+..|+|..++||.|++.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 34567889999999999999999999999999999885 3588887 899999999999999999999999999873
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=4e-10 Score=96.81 Aligned_cols=76 Identities=34% Similarity=0.476 Sum_probs=66.7
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCC---CcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTG---RSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg---~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
..+|||.||+++.+.+++..+|...|.|..+.|..-+... .+.|||||+|.+.++|++|++.|+|+.|+|..|.+|
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3449999999999999999999999999999888765321 234999999999999999999999999999998764
No 75
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.05 E-value=2.6e-10 Score=88.24 Aligned_cols=78 Identities=29% Similarity=0.410 Sum_probs=72.9
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...+...+||||+.+.++.+++..+|+.||.|..+.+..|+.+|+++||+||+|.+.+.++.|++ |||..+.|+.|++
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 44567899999999999999999999999999999999999999999999999999999999999 9999999999865
No 76
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.03 E-value=2.7e-10 Score=89.13 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=65.4
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.....+|+|||+.+.++..+|+..|++||.|.++.|++| |+||.|...++|..|++.||+.+++|++++|
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~v 144 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHV 144 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeee
Confidence 345789999999999999999999999999999999865 9999999999999999999999999999876
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=5.4e-10 Score=95.98 Aligned_cols=74 Identities=24% Similarity=0.363 Sum_probs=69.6
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccce
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 166 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~ 166 (168)
.++|+|.|||+..+-.+++++|..||.+..|+|+.-...+.++|||||+|-+..+|.+|+++|.++-+.||.|.
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLV 686 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLV 686 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhh
Confidence 57999999999999999999999999999999998866788899999999999999999999999999999874
No 78
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=4.6e-10 Score=84.72 Aligned_cols=77 Identities=25% Similarity=0.260 Sum_probs=70.0
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
....++|||+|+...++|+-|.++|-+.|.|.+|.|..++ .++.+ ||||.|.++....-|++.+||..+.+++|.++
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 3457899999999999999999999999999999999887 45556 99999999999999999999999999998764
No 79
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.92 E-value=1.2e-09 Score=91.65 Aligned_cols=72 Identities=28% Similarity=0.279 Sum_probs=65.4
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccce
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 166 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~ 166 (168)
..+.++|+|-|||..|++++|..+|+.||+|+.|+. |-..+|.+||+|.|..+|++|++.|++.++.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 456789999999999999999999999999999755 455689999999999999999999999999999875
No 80
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.91 E-value=3.2e-09 Score=88.20 Aligned_cols=79 Identities=22% Similarity=0.308 Sum_probs=65.6
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
.......|||+|||.++++.+|+++|..||.|+...|..-.-.++..+||||+|.+.++++.|+++ +-..++|+.+.++
T Consensus 284 ~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 284 PRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVE 362 (419)
T ss_pred eeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEE
Confidence 334556699999999999999999999999999988776543355559999999999999999985 5777888887653
No 81
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.90 E-value=1.7e-08 Score=67.90 Aligned_cols=70 Identities=17% Similarity=0.272 Sum_probs=63.7
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhc--cCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFET--AGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 162 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~--~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~g 162 (168)
.++|.|.|+|...+.++|.+++.. .|....+.++.|..++.+.|||||.|.+.+.|.+-.+.++|..+..
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~ 72 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPN 72 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcccc
Confidence 368999999999999999998865 4778889999999899999999999999999999999999998874
No 82
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.89 E-value=8.7e-09 Score=82.34 Aligned_cols=77 Identities=17% Similarity=0.254 Sum_probs=70.7
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCee--------EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--------MVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 161 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~--------~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~ 161 (168)
...+..|||.|||.++|-+++.++|++||.|. .|++.++. .|+.+|=|.+.|...++++.|++.|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44567899999999999999999999999875 47898887 5999999999999999999999999999999
Q ss_pred Ccccee
Q 030975 162 KLSPKK 167 (168)
Q Consensus 162 gr~i~~ 167 (168)
|+.|+|
T Consensus 210 g~~~rV 215 (382)
T KOG1548|consen 210 GKKLRV 215 (382)
T ss_pred CcEEEE
Confidence 999986
No 83
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.88 E-value=3.5e-09 Score=91.15 Aligned_cols=78 Identities=27% Similarity=0.411 Sum_probs=70.2
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecC---CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccc
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDK---VTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 165 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~---~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i 165 (168)
+....+++||+||+..+++++|-..|+.||.|..++|++.+ +..+.+-||||.|.+..+|++|++.|+|..+.++++
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 34557889999999999999999999999999999999875 346678899999999999999999999999998887
Q ss_pred e
Q 030975 166 K 166 (168)
Q Consensus 166 ~ 166 (168)
+
T Consensus 250 K 250 (877)
T KOG0151|consen 250 K 250 (877)
T ss_pred e
Confidence 6
No 84
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.67 E-value=1.2e-07 Score=72.03 Aligned_cols=73 Identities=25% Similarity=0.241 Sum_probs=60.0
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeec-CCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYD-KVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 162 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~-~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~g 162 (168)
.+..++|||.|||.++..-+|+.+|..|-.-+...+-.. +....++-+||++|.+..+|.+|+..|||..+|=
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDp 104 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDP 104 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecc
Confidence 445789999999999999999999999866666555443 2223456899999999999999999999998873
No 85
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.67 E-value=1.6e-08 Score=76.98 Aligned_cols=64 Identities=19% Similarity=0.465 Sum_probs=58.6
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccc
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 165 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i 165 (168)
..+|||+||+.+.+.+|..+|..||.+.++.+. .||+||+|.+..+|..|+..+||.++.|-.+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~ 65 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERL 65 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceee
Confidence 369999999999999999999999999999775 4689999999999999999999999988653
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.64 E-value=1.1e-07 Score=79.22 Aligned_cols=74 Identities=23% Similarity=0.331 Sum_probs=62.8
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.....-|-+.+|||++|+++|.++|+.++ |+.+.+.+ .+|+..|-|||+|.+.+++++|++ .+...+..|.|.|
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEV 80 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEV 80 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEE
Confidence 34456788899999999999999999996 67755554 479999999999999999999998 6877888887765
No 87
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=9.4e-08 Score=80.74 Aligned_cols=80 Identities=24% Similarity=0.388 Sum_probs=74.6
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 88 ~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.......++||+|||...++.++.++...||.+....++.|..+|.++||||.+|-+......|+..|||..++++.|.+
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999998865
No 88
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.46 E-value=2.8e-07 Score=74.12 Aligned_cols=78 Identities=26% Similarity=0.243 Sum_probs=71.7
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCee--------EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--------MVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 161 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~--------~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~ 161 (168)
.....+|||.+|+..+++++|.++|.++|.|. +|.|.+|++|++.||-|.|.|.+...|++|++.+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45677999999999999999999999999875 4788899999999999999999999999999999999999
Q ss_pred Ccccee
Q 030975 162 KLSPKK 167 (168)
Q Consensus 162 gr~i~~ 167 (168)
|..|++
T Consensus 143 gn~ikv 148 (351)
T KOG1995|consen 143 GNTIKV 148 (351)
T ss_pred CCCchh
Confidence 988764
No 89
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.41 E-value=8.4e-08 Score=80.70 Aligned_cols=79 Identities=20% Similarity=0.261 Sum_probs=73.3
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...+.++||+-.|....++-+|.++|+.+|.|..|.++.|+.++.++|.|||+|.+.+....|+. |.|..+.|-+|.++
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEec
Confidence 44567899999999999999999999999999999999999999999999999999999999995 99999999998774
No 90
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.40 E-value=1.8e-06 Score=56.11 Aligned_cols=64 Identities=25% Similarity=0.278 Sum_probs=44.5
Q ss_pred CEEEEeCCCCCCcHHH----HHHHhhccCC-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 94 LKLFVGNLPFSVDSAQ----LAGLFETAGN-VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~----L~~~F~~~G~-i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
..|||.|||.+.+... |++++..||. |..| + .|-|+|.|.+.+.|.+|.+.|+|..+.|+.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------~---~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------S---GGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------e---CCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 3689999999988755 5677777864 5554 1 368999999999999999999999999999876
No 91
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.35 E-value=1.7e-06 Score=70.78 Aligned_cols=70 Identities=24% Similarity=0.352 Sum_probs=63.8
Q ss_pred CCEEEEeCCCC-CCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 93 DLKLFVGNLPF-SVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 93 ~~~lfV~nLp~-~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
+..|.|.||.. .+|.+.|..+|+-||.|.+|+|.+++. --|.|.|.+...|+-|++.|+|..|.|+.|++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrv 367 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRV 367 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEE
Confidence 57889999965 599999999999999999999998862 46999999999999999999999999999986
No 92
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=4.5e-06 Score=70.09 Aligned_cols=69 Identities=28% Similarity=0.346 Sum_probs=64.2
Q ss_pred CCCCCCCCCEEEEeCCCCCCcHHHHHHHhh-ccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHH
Q 030975 86 DGSNFSPDLKLFVGNLPFSVDSAQLAGLFE-TAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154 (168)
Q Consensus 86 ~~~~~~~~~~lfV~nLp~~~~e~~L~~~F~-~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~ 154 (168)
.+...++.+|||||+||.-++.++|..+|+ -||.|..+-|-.|++-+..+|-|-|+|.+...-.+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 556678899999999999999999999998 699999999999988999999999999999999999974
No 93
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.20 E-value=3.9e-06 Score=70.07 Aligned_cols=75 Identities=23% Similarity=0.222 Sum_probs=62.2
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~-v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.....|-+.+||+.|++++|.++|+..-.+.. +.++.++ .++..|-|||.|.+.+.|+.|+. -|...|+.|.|.+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEv 176 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEV 176 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEe
Confidence 35678889999999999999999998755544 5566665 67899999999999999999998 5777788777754
No 94
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.20 E-value=8.5e-07 Score=70.79 Aligned_cols=75 Identities=25% Similarity=0.411 Sum_probs=67.9
Q ss_pred CCCEEE-EeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 92 PDLKLF-VGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 92 ~~~~lf-V~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...++| |+||++.+++++|+.+|..+|.|..+++..++.++.++|||||.|........++.. ++..++|+++++
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 258 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRL 258 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccc
Confidence 345566 999999999999999999999999999999999999999999999999999999986 788888887654
No 95
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.12 E-value=2.5e-06 Score=68.70 Aligned_cols=75 Identities=19% Similarity=0.354 Sum_probs=66.2
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccce
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAG--NVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 166 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G--~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~ 166 (168)
....+|||||-|++++++|.+.+...| .+.++++..++.+|+++|||.|...+....++-++.|-.+.|.|+.-.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCe
Confidence 356799999999999999998888766 477888888999999999999999999999999999999999987543
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.12 E-value=3.7e-06 Score=64.07 Aligned_cols=70 Identities=16% Similarity=0.250 Sum_probs=56.8
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 030975 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 161 (168)
Q Consensus 88 ~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~ 161 (168)
...+...+|||.||..+++|++|+++|+.|.....++|. ....-+.+|++|.+.+.|..|+..|+|..|.
T Consensus 205 ~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~----~~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 205 SGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR----ARGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred ccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe----cCCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 344556789999999999999999999999765555543 2234568999999999999999999998764
No 97
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=1.6e-05 Score=67.67 Aligned_cols=71 Identities=24% Similarity=0.357 Sum_probs=59.6
Q ss_pred CCCCEEEEeCCCCCCcH------HHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 030975 91 SPDLKLFVGNLPFSVDS------AQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 162 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e------~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~g 162 (168)
.-...|+|.|+|..-.. .-|..+|+++|.+..+.++.+.++| .+||.|++|.+..+|+.|++.|||+.++-
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecc
Confidence 55678999999864222 2367789999999999999887555 99999999999999999999999998874
No 98
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.08 E-value=2e-05 Score=60.01 Aligned_cols=73 Identities=27% Similarity=0.409 Sum_probs=63.5
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-Cccce
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN-KLSPK 166 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~-gr~i~ 166 (168)
...+...+|+.|||..++.+.+..+|++|+..++++++..+ .|.+||+|.+...|..|...++|..|- ...++
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~ 215 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQ 215 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEE
Confidence 45678899999999999999999999999999999998654 579999999999999999999998776 44443
No 99
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.07 E-value=2.5e-06 Score=65.07 Aligned_cols=70 Identities=29% Similarity=0.415 Sum_probs=61.5
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
....+.++|.|+..++.+.+|.++|..+|.+....+ ..+++||+|...++|.+|++.++|..+.|+.|..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 455788999999999999999999999999855443 3568999999999999999999999999998863
No 100
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.04 E-value=1.1e-05 Score=64.85 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=57.8
Q ss_pred CCCEEEEeCCCCCCcHHH----H--HHHhhccCCeeEEEEeecC-CCCCcceE--EEEEecCHHHHHHHHHHhCCceeCC
Q 030975 92 PDLKLFVGNLPFSVDSAQ----L--AGLFETAGNVEMVEVIYDK-VTGRSRGF--GFVTMSSVEEVEAAAQQFNGYVSNK 162 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~----L--~~~F~~~G~i~~v~l~~~~-~tg~~~g~--~FV~f~~~~~a~~Al~~l~g~~~~g 162 (168)
+..-+||-+|+..+..++ | .++|++||.|..|.+-+.. ...-..+. .||+|.+.++|.+|+...+|..+||
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345689999988766555 3 5789999999998765442 11111222 3999999999999999999999999
Q ss_pred cccee
Q 030975 163 LSPKK 167 (168)
Q Consensus 163 r~i~~ 167 (168)
|-|+.
T Consensus 193 r~lka 197 (480)
T COG5175 193 RVLKA 197 (480)
T ss_pred ceEee
Confidence 98874
No 101
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.04 E-value=1.6e-05 Score=54.29 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=38.7
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCc
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 158 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~ 158 (168)
..|.|.|++..++.++|++.|+.||.|..|.+... ..-|||.|.+.+.|++|++.+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhc
Confidence 46889999999999999999999999999987654 237999999999999999876533
No 102
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.93 E-value=0.00013 Score=59.48 Aligned_cols=76 Identities=25% Similarity=0.236 Sum_probs=66.6
Q ss_pred CCCCCCCEEEEeCCCCC-CcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccce
Q 030975 88 SNFSPDLKLFVGNLPFS-VDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 166 (168)
Q Consensus 88 ~~~~~~~~lfV~nLp~~-~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~ 166 (168)
....++.-+.|-+|... ++-+.|..+|..||.|++|++++.+ .|-|.|++.+..+.++|+..||+..+-|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 44567888999999765 7788999999999999999999876 46799999999999999999999999998886
Q ss_pred eC
Q 030975 167 KK 168 (168)
Q Consensus 167 ~k 168 (168)
++
T Consensus 357 v~ 358 (494)
T KOG1456|consen 357 VC 358 (494)
T ss_pred Ee
Confidence 53
No 103
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.76 E-value=0.00011 Score=43.99 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=41.5
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHH
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAA 152 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al 152 (168)
+.|-|.|.+.+.. +.+..+|..||+|.++.+. ...-+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 4677889987654 5566689999999998876 22448999999999999985
No 104
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.75 E-value=2.2e-05 Score=60.86 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=62.3
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCC--------CCcceE----EEEEecCHHHHHHHHHHhCCce
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVT--------GRSRGF----GFVTMSSVEEVEAAAQQFNGYV 159 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~t--------g~~~g~----~FV~f~~~~~a~~Al~~l~g~~ 159 (168)
....||++++|..++..-|+++|+.||.|-.|.+-....+ |.+.++ |.|+|.+...|.+..+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999988765444 333333 6789999999999999999999
Q ss_pred eCCcc
Q 030975 160 SNKLS 164 (168)
Q Consensus 160 ~~gr~ 164 (168)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99975
No 105
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.73 E-value=0.00016 Score=53.84 Aligned_cols=66 Identities=23% Similarity=0.312 Sum_probs=58.2
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 161 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~ 161 (168)
.......|.|.+||...++++|+++..+.|.|....+.+| |+|.|+|...++.+-|+.+|+...+.
T Consensus 111 srrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 111 SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 3445688999999999999999999999999999998877 48999999999999999998876543
No 106
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.71 E-value=0.00012 Score=58.97 Aligned_cols=76 Identities=22% Similarity=0.246 Sum_probs=60.8
Q ss_pred CCCCCCCCEEEEeCC--CC--CCc-------HHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 030975 87 GSNFSPDLKLFVGNL--PF--SVD-------SAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155 (168)
Q Consensus 87 ~~~~~~~~~lfV~nL--p~--~~~-------e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l 155 (168)
.......++|.+.|+ |. ..+ +++|++-..+||.|..|.|. + .++.|.+-|.|.+.++|..|++.|
T Consensus 259 ~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m 334 (382)
T KOG1548|consen 259 PSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTM 334 (382)
T ss_pred cccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHh
Confidence 345567789999997 22 222 24566667899999999765 3 467899999999999999999999
Q ss_pred CCceeCCccce
Q 030975 156 NGYVSNKLSPK 166 (168)
Q Consensus 156 ~g~~~~gr~i~ 166 (168)
+|..++||.|.
T Consensus 335 ~GR~fdgRql~ 345 (382)
T KOG1548|consen 335 DGRWFDGRQLT 345 (382)
T ss_pred cCeeecceEEE
Confidence 99999999985
No 107
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.64 E-value=0.00033 Score=47.37 Aligned_cols=71 Identities=18% Similarity=0.086 Sum_probs=49.2
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEE-EeecC------CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccc
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVE-VIYDK------VTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 165 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~-l~~~~------~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i 165 (168)
..-|.|-|.|.. ....+-++|++||.|.+.. +.++. ..-.....-.|.|.++.+|++||. .||..++|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456889999987 6677888999999987764 11100 011234588999999999999998 79999998654
No 108
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.63 E-value=0.00015 Score=61.66 Aligned_cols=59 Identities=17% Similarity=0.159 Sum_probs=49.7
Q ss_pred HHHHHhhccCCeeEEEEeec---CCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 109 QLAGLFETAGNVEMVEVIYD---KVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 109 ~L~~~F~~~G~i~~v~l~~~---~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
+++.-+.+||.|..|.+.++ .......|..||+|.+.+++++|++.|+|..++||.+..
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvt 486 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVA 486 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEE
Confidence 45566778999999999887 234556788999999999999999999999999998753
No 109
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.53 E-value=0.00023 Score=62.17 Aligned_cols=73 Identities=19% Similarity=0.228 Sum_probs=62.8
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccCCee-EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAGNVE-MVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~-~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
+.|-|.|+|++++-+||-++|..|-.+- +|.+-++ +.|...|-|-|.|++.++|.+|...|++..|..|.+..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l 941 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSL 941 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEE
Confidence 4788999999999999999999997653 4555544 47999999999999999999999999999999988753
No 110
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.51 E-value=9.5e-05 Score=61.12 Aligned_cols=66 Identities=21% Similarity=0.378 Sum_probs=55.5
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeec---CC--CCC--------cceEEEEEecCHHHHHHHHHHhCC
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYD---KV--TGR--------SRGFGFVTMSSVEEVEAAAQQFNG 157 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~---~~--tg~--------~~g~~FV~f~~~~~a~~Al~~l~g 157 (168)
+.++|.+.|||.+-.-+.|.++|+.+|.|+.|+|+.- +. .|. .+-+|+|+|...+.|.+|.+.|+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 6789999999999888999999999999999999875 22 122 256799999999999999997643
No 111
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.50 E-value=0.00014 Score=59.47 Aligned_cols=74 Identities=18% Similarity=0.298 Sum_probs=63.7
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCC-eeE--EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGN-VEM--VEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~-i~~--v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...|-+++||+..+.++|-++|..|-. |.. |+++.+. .|+..|-|||+|.+.++|.+|..+.+.....+|.|.+
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 567889999999999999999998864 444 8888886 6999999999999999999999988887777887764
No 112
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.43 E-value=5.6e-05 Score=58.62 Aligned_cols=57 Identities=23% Similarity=0.210 Sum_probs=48.3
Q ss_pred HHHHHhh-ccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccce
Q 030975 109 QLAGLFE-TAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 166 (168)
Q Consensus 109 ~L~~~F~-~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~ 166 (168)
++...|+ +||+|+++.|..+. .....|-.||.|...++|++|++.||+..+.|++|.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ 141 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIH 141 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcce
Confidence 3444455 79999999877664 567789999999999999999999999999999985
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00062 Score=57.55 Aligned_cols=64 Identities=23% Similarity=0.396 Sum_probs=48.3
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecC---CCCCcce---EEEEEecCHHHHHHHHHHh
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDK---VTGRSRG---FGFVTMSSVEEVEAAAQQF 155 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~---~tg~~~g---~~FV~f~~~~~a~~Al~~l 155 (168)
.-.++||||+||++++|+.|...|..||.+. |.+.... .--..+| |.|+.|+++..++.-+..+
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 3458999999999999999999999999743 3444211 1123356 9999999999888866654
No 114
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.33 E-value=0.0004 Score=56.90 Aligned_cols=70 Identities=20% Similarity=0.293 Sum_probs=55.1
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhc----cCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccc
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFET----AGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 165 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~----~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i 165 (168)
-.|-+++||+++++.++.++|.. -|..+.|.+++.. .|+..|-|||.|..+++|+.||.+ |...++.|.|
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHH
Confidence 34556799999999999999963 2456677777655 689999999999999999999984 5555655554
No 115
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.18 E-value=0.0023 Score=45.99 Aligned_cols=71 Identities=25% Similarity=0.253 Sum_probs=50.4
Q ss_pred CCCCCCEEEEeCCC------CCCcH---HHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce
Q 030975 89 NFSPDLKLFVGNLP------FSVDS---AQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV 159 (168)
Q Consensus 89 ~~~~~~~lfV~nLp------~~~~e---~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~ 159 (168)
-..+..+|.|.=+. ...++ .+|-+.|..||++.-++++-+ .-.|+|.+...|-+|+. ++|..
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~ 93 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQ 93 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcE
Confidence 34556788787555 12333 356777889999887777643 46899999999999998 99999
Q ss_pred eCCccceeC
Q 030975 160 SNKLSPKKK 168 (168)
Q Consensus 160 ~~gr~i~~k 168 (168)
+.|+.|++|
T Consensus 94 v~g~~l~i~ 102 (146)
T PF08952_consen 94 VNGRTLKIR 102 (146)
T ss_dssp ETTEEEEEE
T ss_pred ECCEEEEEE
Confidence 999998764
No 116
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.09 E-value=0.0044 Score=38.13 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=45.6
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhcc---CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETA---GNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~---G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l 155 (168)
..+|+|.|+.. ++.++++.+|..| .....|+++-|. -|-|.|.+.+.|.+||..|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 35799999864 7889999999887 236789999885 5889999999999999764
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.00 E-value=4e-05 Score=67.83 Aligned_cols=67 Identities=27% Similarity=0.402 Sum_probs=58.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 157 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g 157 (168)
.+-.++||.||+..+.+.+|...|..+|.+..+++.-...+++.+|+||+.|...+++.+|+...++
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~ 731 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDS 731 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhh
Confidence 4457899999999999999999999999888877764556799999999999999999999985443
No 118
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.84 E-value=0.0019 Score=53.08 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=60.9
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecC---CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDK---VTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~---~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...|-|.||...++.++++.+|...|.|.++.|+.+. ......-.|||.|.+...+..|.. |..+++-|+.|.|
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 3489999999999999999999999999999887643 223445689999999999998876 7777777776654
No 119
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.81 E-value=0.00051 Score=55.25 Aligned_cols=75 Identities=16% Similarity=0.284 Sum_probs=57.5
Q ss_pred CCCEEEEeCCCCCCcHH-HH--HHHhhccCCeeEEEEeecCC--C-CCcceEEEEEecCHHHHHHHHHHhCCceeCCccc
Q 030975 92 PDLKLFVGNLPFSVDSA-QL--AGLFETAGNVEMVEVIYDKV--T-GRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 165 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~-~L--~~~F~~~G~i~~v~l~~~~~--t-g~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i 165 (168)
...-+||-+|+..+..+ .| .+.|.+||.|..|.+-.+.. . .....-++|+|...++|.+||...+|..++|+.+
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 34678898998776544 44 35688999999998877651 1 1122338999999999999999999999999986
Q ss_pred e
Q 030975 166 K 166 (168)
Q Consensus 166 ~ 166 (168)
+
T Consensus 156 k 156 (327)
T KOG2068|consen 156 K 156 (327)
T ss_pred H
Confidence 4
No 120
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.79 E-value=0.0015 Score=58.49 Aligned_cols=69 Identities=16% Similarity=0.270 Sum_probs=60.4
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKL 163 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr 163 (168)
.....+.+|||+|..|+....|...|..||.|..|.+- +..-|++|.|.+...++.|++.|-|..++|-
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq~yayi~yes~~~aq~a~~~~rgap~G~P 519 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQPYAYIQYESPPAAQAATHDMRGAPLGGP 519 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCCcceeeecccCccchhhHHHHhcCcCCCC
Confidence 34456889999999999999999999999999997653 3456999999999999999999999998863
No 121
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.71 E-value=0.032 Score=38.35 Aligned_cols=68 Identities=18% Similarity=0.186 Sum_probs=51.0
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhcc-CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETA-GNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 162 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~-G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~g 162 (168)
...+.+...|..+..++|..+.+.+ ..|..++|++|. ..++-.+.+.|.+.++|..-.+.+||+.++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3344444555556666776555555 458899999884 4578889999999999999999999998764
No 122
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.63 E-value=0.023 Score=45.44 Aligned_cols=65 Identities=18% Similarity=0.133 Sum_probs=51.2
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccc
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 165 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i 165 (168)
+.=|-|-+++.. .-..|-.+|++||+|.+.... .+..+-+|.|.+..+|++||. .||..|+|..+
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 455667788775 345677889999998776433 344589999999999999998 79999998765
No 123
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.60 E-value=0.0077 Score=47.94 Aligned_cols=59 Identities=19% Similarity=0.048 Sum_probs=48.2
Q ss_pred HHHHHHhhccCCeeEEEEeecCCCCCc-ceEEEEEecCHHHHHHHHHHhCCceeCCccce
Q 030975 108 AQLAGLFETAGNVEMVEVIYDKVTGRS-RGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 166 (168)
Q Consensus 108 ~~L~~~F~~~G~i~~v~l~~~~~tg~~-~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~ 166 (168)
+++++..++||.|..|.|..++.--.. .---||+|...++|.+|+-.|||..++||.++
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 567888899999999988777522222 33589999999999999999999999999764
No 124
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.59 E-value=0.0031 Score=49.12 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=55.9
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 157 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g 157 (168)
..|||.||...++-+.+.+-|..||.|+...++.|- .++..+-++|.|...-.|.+|+..++.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhcc
Confidence 689999999999999999999999999887776664 688899999999999999999987743
No 125
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.56 E-value=0.0058 Score=50.60 Aligned_cols=69 Identities=23% Similarity=0.299 Sum_probs=56.9
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKL 163 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr 163 (168)
.+..++...|+|.+++|++++.+|..-|.......- -++.+-++.+.+.+.++|-.|+..++.+.+++.
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen 480 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGEN 480 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCC
Confidence 556789999999999999999999988765433222 345567999999999999999999998888765
No 126
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.54 E-value=0.00096 Score=59.41 Aligned_cols=68 Identities=15% Similarity=0.271 Sum_probs=60.6
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 161 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~ 161 (168)
...|||.|.|+..+.++++.++.++|.+..+.++..+ .|+.+|.+||.|.+..++.+++..+++..+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhh
Confidence 5789999999999999999999999999999988877 7999999999999999999988766654443
No 127
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.46 E-value=0.0026 Score=52.87 Aligned_cols=67 Identities=21% Similarity=0.298 Sum_probs=50.4
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCc-eeCCccce
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY-VSNKLSPK 166 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~-~~~gr~i~ 166 (168)
.++|+|||...++..+|..+|...-.--.-.++ .--||+||.+.+...|.+|++.++|. ++.|+.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e 69 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQE 69 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceee
Confidence 368999999999999999999754111111111 12479999999999999999999986 46677654
No 128
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.38 E-value=0.0051 Score=52.56 Aligned_cols=68 Identities=24% Similarity=0.309 Sum_probs=49.1
Q ss_pred CEEEEeCCCCCCcHHHHHHHhh-ccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFE-TAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 161 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~-~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~ 161 (168)
+++.|.|++...|...|.+.-+ ..|.-..+.++.|-.+..+.|||||.|.+.+++.++.+++||+.|+
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~ 457 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWE 457 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchh
Confidence 3444444444444443333322 2466667888989888999999999999999999999999998765
No 129
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.35 E-value=0.0035 Score=54.09 Aligned_cols=65 Identities=31% Similarity=0.367 Sum_probs=54.1
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhh-ccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFE-TAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS 160 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~-~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~ 160 (168)
......|||.||-.-+|.-+|+.+++ .+|.|+.. || | +.+..|||.|.+.++|.+...+|||..|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~W 506 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D----KIKSHCYVSYSSVEEAAATREALHNVQW 506 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H----HhhcceeEecccHHHHHHHHHHHhcccc
Confidence 34567899999988899999999998 56777766 33 3 4567899999999999999999999865
No 130
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.34 E-value=0.034 Score=36.23 Aligned_cols=54 Identities=17% Similarity=0.329 Sum_probs=40.7
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 156 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~ 156 (168)
...+|+ +|......||.++|+.||.| .|.++-|. -|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 345555 99999999999999999985 45666553 79999999999999988765
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.23 E-value=0.0021 Score=56.38 Aligned_cols=75 Identities=19% Similarity=0.099 Sum_probs=63.1
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~-v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.+..|||..||..+.+.++-++|...-.|++ |.|.+.+ +++-++.|||.|..++++..|...-+.+.++.|.|++
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 4578999999999999999999998777777 7777666 7889999999999988888888766666677777765
No 132
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.17 E-value=0.0087 Score=44.60 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=46.1
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhc-cCCe---eEEEEeecC--CCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFET-AGNV---EMVEVIYDK--VTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 162 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~-~G~i---~~v~l~~~~--~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~g 162 (168)
....+|.|++||+.++|+++.+.+.. ++.- ..+.-.... .......-|||.|.+.+++..-...++|+.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 34679999999999999999987665 5554 334322222 112235569999999999999999999977643
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.91 E-value=0.0018 Score=58.14 Aligned_cols=74 Identities=20% Similarity=0.387 Sum_probs=62.5
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 030975 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 162 (168)
Q Consensus 88 ~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~g 162 (168)
.+....++||+|||+..+++.+|+..|..+|.|.+|.|-.-+ -+...-|+||.|-+.+.+..|+..+.+..|..
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~ 440 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGN 440 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCcccc
Confidence 344567899999999999999999999999999999887664 34556699999999999999998888876653
No 134
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.89 E-value=0.012 Score=51.25 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=59.1
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
....+|||||+...+..+-++.+...+|.|..+.... |||..|.......+|+..++-..++|..+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 4467899999999999999999999999988765442 9999999999999999999888888887654
No 135
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.75 E-value=0.058 Score=44.45 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=54.3
Q ss_pred CCCCCCEEEEeCC--CCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 030975 89 NFSPDLKLFVGNL--PFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 162 (168)
Q Consensus 89 ~~~~~~~lfV~nL--p~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~g 162 (168)
....+..|.+.-| -+.++-+-|..+....|.|.+|.|.+. +| --|.|+|++.+.|++|.+.|||..|..
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYs 186 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYS 186 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccc
Confidence 3344555555544 455888999999999999999988754 33 368999999999999999999998763
No 136
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.34 E-value=0.045 Score=47.12 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=55.2
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhc--cCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCccce
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFET--AGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG--YVSNKLSPK 166 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~--~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g--~~~~gr~i~ 166 (168)
...+.|+++-||..+-.++++.+|.. |-.+..|++-.+. --||+|.+..||+.|.+.|.. ++|-|++|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34577888999999999999999964 7777888776553 369999999999999987754 457777764
No 137
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.03 E-value=0.013 Score=47.02 Aligned_cols=75 Identities=16% Similarity=0.062 Sum_probs=63.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccc
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 165 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i 165 (168)
....+.|+|++.+.+.+.+...++..+|.+....+........++|++++.|...+.+..|++....+.++++.+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKG 160 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccc
Confidence 346789999999999999899999999988888888777789999999999999999999998433346655543
No 138
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.37 E-value=0.14 Score=38.42 Aligned_cols=56 Identities=21% Similarity=0.090 Sum_probs=43.2
Q ss_pred cHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC--CceeCCcccee
Q 030975 106 DSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN--GYVSNKLSPKK 167 (168)
Q Consensus 106 ~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~--g~~~~gr~i~~ 167 (168)
..+.|+++|..++.+..+...+. .+-..|.|.+.+.|.+|...|+ +..+.|..+++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~ 65 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRV 65 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EE
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEE
Confidence 34789999999999888766643 4568899999999999999999 99999988764
No 139
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.02 E-value=0.025 Score=47.73 Aligned_cols=67 Identities=27% Similarity=0.274 Sum_probs=52.2
Q ss_pred CEEEEeCCCCCC-cHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 94 LKLFVGNLPFSV-DSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 94 ~~lfV~nLp~~~-~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
+.+-+.-.++.. +-++|..+|.+||.|..|.+-+. --.|.|+|.+..+|.+|.. ..+..|++|.|++
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl 440 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKL 440 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEE
Confidence 334444445553 35889999999999999988655 2368999999999988876 7999999999875
No 140
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.56 E-value=0.39 Score=29.88 Aligned_cols=54 Identities=13% Similarity=0.147 Sum_probs=41.4
Q ss_pred CCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccce
Q 030975 104 SVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 166 (168)
Q Consensus 104 ~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~ 166 (168)
.++-++++..+..|+- .+ |..|+ +| =||.|.+..+|+++.+..+|..+.+..+.
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecC-CE-----EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 3677899999999863 33 33343 44 38999999999999999999988776654
No 141
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=92.97 E-value=1.1 Score=35.82 Aligned_cols=49 Identities=10% Similarity=0.080 Sum_probs=37.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCe-eEEEEeecCCCCCcceEEEEEecCH
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNV-EMVEVIYDKVTGRSRGFGFVTMSSV 145 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i-~~v~l~~~~~tg~~~g~~FV~f~~~ 145 (168)
....-||++||+.++.-.+|+..+.+.|.+ ..+.+ ..++|-||+.|.+.
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 344569999999999999999999887764 33333 24577899999654
No 142
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.29 E-value=0.73 Score=29.08 Aligned_cols=57 Identities=14% Similarity=0.261 Sum_probs=34.3
Q ss_pred CCCCcHHHHHHHhhccCC-----eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 102 PFSVDSAQLAGLFETAGN-----VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 102 p~~~~e~~L~~~F~~~G~-----i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
-..++..+|..++...+. |-.|++..+ |.||+-.. +.|+.+++.|++..+.|+.+++
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~v 71 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRV 71 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----E
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEE
Confidence 345788888888877643 556776533 88998864 5888999999999999999876
No 143
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.53 E-value=0.83 Score=38.64 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=58.8
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhcc-CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETA-GNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 162 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~-G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~g 162 (168)
...|+|-.+|.-++-.||-.+...+ -.|.++++++|. -.++-...|.|.+.++|..-.+.+||..++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7889999999999999999988765 458999999974 4456679999999999999999999988764
No 144
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.12 E-value=0.49 Score=34.10 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=44.8
Q ss_pred CCCCEEEEeCCCCCCcH-HHH---HHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 030975 91 SPDLKLFVGNLPFSVDS-AQL---AGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 157 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e-~~L---~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g 157 (168)
.+-.+|.|.=|..++.. +|+ -..++.||.|..|.+. .+.-|.|.|.+..+|-+|+.++..
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC
Confidence 44568888877666542 444 4456789999999664 345799999999999999998765
No 145
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=89.63 E-value=0.084 Score=40.58 Aligned_cols=71 Identities=32% Similarity=0.401 Sum_probs=60.3
Q ss_pred CCCCCCEEEEeC----CCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 030975 89 NFSPDLKLFVGN----LPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS 160 (168)
Q Consensus 89 ~~~~~~~lfV~n----Lp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~ 160 (168)
......+++.|+ |...++++.+...|+..|.++.+++..+.+ |+++.++|+++......-.++..+.+...
T Consensus 76 ~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 76 EDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred cchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 445567889998 888899999999999999999999998874 89999999999988888888887766543
No 146
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=86.91 E-value=0.11 Score=43.16 Aligned_cols=64 Identities=13% Similarity=0.018 Sum_probs=53.1
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 161 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~ 161 (168)
.++++|++|...+...++-+.|..+|+|...++. .|-..-+|-++|........|++ ++|.++.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 3789999999999999999999999998887665 45556688899999888888988 6776543
No 147
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.90 E-value=5.9 Score=34.77 Aligned_cols=74 Identities=22% Similarity=0.276 Sum_probs=57.8
Q ss_pred CCCCCEEEEeCCCCC-CcHHHHHHHhhcc----CCeeEEEEeecC----------CCCC---------------------
Q 030975 90 FSPDLKLFVGNLPFS-VDSAQLAGLFETA----GNVEMVEVIYDK----------VTGR--------------------- 133 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~-~~e~~L~~~F~~~----G~i~~v~l~~~~----------~tg~--------------------- 133 (168)
....++|-|.|+.|+ +...+|..+|..| |.|..|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445688999999998 8889999999876 678888765421 0111
Q ss_pred ----------------cceEEEEEecCHHHHHHHHHHhCCceeCCc
Q 030975 134 ----------------SRGFGFVTMSSVEEVEAAAQQFNGYVSNKL 163 (168)
Q Consensus 134 ----------------~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr 163 (168)
-.-||.|+|.+.+.|.+..+.++|.++...
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 234799999999999999999999987654
No 148
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.93 E-value=4.2 Score=34.15 Aligned_cols=61 Identities=20% Similarity=0.141 Sum_probs=48.5
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCC-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGN-VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 161 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~-i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~ 161 (168)
..-|=|.++|.....+||-..|+.||. --+|+|+-|. .+|-.|.+...|..||. |..-.+.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt-~kh~~lK 452 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT-LKHDWLK 452 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh-ccCceEE
Confidence 356778899998888999999999875 5678888765 79999999999999997 4443333
No 149
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=78.46 E-value=1.1 Score=40.75 Aligned_cols=59 Identities=25% Similarity=0.253 Sum_probs=48.6
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 030975 96 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS 160 (168)
Q Consensus 96 lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~ 160 (168)
.++-|..-..+...|..++..||.+..+...++- ..+.|+|...+.|-.|+++++|+++
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkev 359 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEV 359 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcc
Confidence 3444555566777899999999999998877663 4799999999999999999999864
No 150
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=78.45 E-value=4.3 Score=30.51 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=53.7
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 030975 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 161 (168)
Q Consensus 88 ~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~ 161 (168)
........+++++++..+...++...|..+|.+....+...........+.++.+.....+..+..........
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRGNKKKIL 293 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhccccceeec
Confidence 34456788999999999999999999999999988777766655555666666666666666555544444433
No 151
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=75.13 E-value=11 Score=26.14 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=27.3
Q ss_pred cHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEec-CHHHHHHHHH
Q 030975 106 DSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMS-SVEEVEAAAQ 153 (168)
Q Consensus 106 ~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~-~~~~a~~Al~ 153 (168)
+.+.|++.|..|..++ ++..+++ ..+.|++.|.|. +-.-...|++
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 4578999999998764 6666775 477999999995 3344444443
No 152
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=63.12 E-value=22 Score=21.79 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=14.2
Q ss_pred HHHHHHhhccCCeeEEE
Q 030975 108 AQLAGLFETAGNVEMVE 124 (168)
Q Consensus 108 ~~L~~~F~~~G~i~~v~ 124 (168)
++|+++|+..|.|.-+.
T Consensus 9 ~~iR~~fs~lG~I~vLY 25 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLY 25 (62)
T ss_pred HHHHHHHHhcCcEEEEE
Confidence 57999999999987654
No 153
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=62.77 E-value=4.9 Score=30.08 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=45.6
Q ss_pred CCCCEEEEeCCCCCCcH-----HHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc
Q 030975 91 SPDLKLFVGNLPFSVDS-----AQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKL 163 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e-----~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr 163 (168)
+-...+++.+++..+-. .....+|.+|.+....++. ++.+..-|.|.+.+.|..|...++++.+.|.
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l------rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL------RSFRRVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH------HhhceeEEeccChhHHHHHHHHhhhcccCCC
Confidence 33556788888766443 2234455555554444443 2345667889999999999999999999987
No 154
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=61.71 E-value=23 Score=23.19 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=31.4
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEec
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMS 143 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~ 143 (168)
..-|||||++..+.|.--..+.+..+.-.-+-+..+. + ..||.|-++.
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~-n--eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN-N--EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC-C--CCCEEEEEeC
Confidence 3459999999988876666655555544444333332 2 6789998874
No 155
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=57.82 E-value=24 Score=28.52 Aligned_cols=56 Identities=18% Similarity=0.171 Sum_probs=43.8
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecC-------CCCCcceEEEEEecCHHHH
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDK-------VTGRSRGFGFVTMSSVEEV 148 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~-------~tg~~~g~~FV~f~~~~~a 148 (168)
.+.|...|+..+++-..+-..|.+||.|+.|.++.+. +..+......+.|-+.+.+
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~C 77 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREIC 77 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHH
Confidence 4678888999999988888899999999999999775 1234456777888776654
No 156
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=56.78 E-value=24 Score=23.65 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=28.8
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecC
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSS 144 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~ 144 (168)
..-||||+++..+.+.--..+-+.++.-. +.+++.. + .-.||.|-++.+
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~-avmv~~~-~-~eqG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGN-VVMAWAT-N-TESGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCc-EEEEEcC-C-CCCCcEEEecCC
Confidence 34599999988877654444444454422 3333322 2 223999988864
No 157
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=56.42 E-value=0.62 Score=39.22 Aligned_cols=70 Identities=26% Similarity=0.265 Sum_probs=55.5
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEee-cCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccce
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIY-DKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 166 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~-~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~ 166 (168)
.+++-|.|+|....++.|-.++..||.++.|..+. |.++ -..-|+|...+.++.|+.+++|..+....++
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k 150 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLK 150 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhh
Confidence 46688999999999999999999999998886532 2222 2344788999999999999999877665544
No 158
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=55.48 E-value=6.8 Score=25.79 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.0
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHh
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLF 114 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F 114 (168)
..++|.|.|||...++++|++.+
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeE
Confidence 46789999999999999999763
No 159
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=49.54 E-value=27 Score=29.16 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=47.4
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCC-eeEEEEeecCC--CCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGN-VEMVEVIYDKV--TGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 161 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~-i~~v~l~~~~~--tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~ 161 (168)
..+|.|.+||...++.++.+....|-. +....+..... -..-.+.+||.|...++...-.+.++|+++-
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 467889999999999888877666432 22222221110 1122667999999999988888889998764
No 160
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=48.38 E-value=4.8 Score=33.08 Aligned_cols=47 Identities=26% Similarity=0.312 Sum_probs=37.6
Q ss_pred HHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCc
Q 030975 108 AQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 158 (168)
Q Consensus 108 ~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~ 158 (168)
..+.+++.+.|.|..-.+.+- .+-|.|||..-..++++++++.+.+.
T Consensus 276 p~iF~~i~~~G~v~~~EM~rt----FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 276 PPIFKWLQKAGNVEREEMYRT----FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred cHHHHHHHHhcCCCHHHHHHH----hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 567788888998876655543 56788999999999999999998864
No 161
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=46.17 E-value=29 Score=22.31 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=23.2
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhCCce
Q 030975 132 GRSRGFGFVTMSSVEEVEAAAQQFNGYV 159 (168)
Q Consensus 132 g~~~g~~FV~f~~~~~a~~Al~~l~g~~ 159 (168)
...+||-||+=.+..++..|++.+.+..
T Consensus 41 ~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 41 DSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 3579999999999999999998776643
No 162
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=45.29 E-value=27 Score=28.09 Aligned_cols=52 Identities=17% Similarity=0.348 Sum_probs=35.1
Q ss_pred CCCCEEEEeCCCCC------------CcHHHHHHHhhccCCeeEEEEeec-----CCCCCcceEEEEEe
Q 030975 91 SPDLKLFVGNLPFS------------VDSAQLAGLFETAGNVEMVEVIYD-----KVTGRSRGFGFVTM 142 (168)
Q Consensus 91 ~~~~~lfV~nLp~~------------~~e~~L~~~F~~~G~i~~v~l~~~-----~~tg~~~g~~FV~f 142 (168)
....+||+.+||-. -++.-|+..|+.||.|..|.|+.. ..+|+..|.-|-.|
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gf 215 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGF 215 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeecc
Confidence 34567888888731 346779999999999999877642 24666644444333
No 163
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=45.21 E-value=84 Score=20.39 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=40.7
Q ss_pred EEEEeCCCCCCcHHHHHHHhhc-cCC-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHH
Q 030975 95 KLFVGNLPFSVDSAQLAGLFET-AGN-VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQ 154 (168)
Q Consensus 95 ~lfV~nLp~~~~e~~L~~~F~~-~G~-i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~ 154 (168)
.-|+--++.+.+..++++.++. ||. |..|....-+ ...-=|||.+...++|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHh
Confidence 3556667888999999999987 664 7777766544 2233599999888887765443
No 164
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=43.57 E-value=29 Score=27.55 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=55.2
Q ss_pred CCCCEEEEeCCCCCCcHHH-H--HHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccce
Q 030975 91 SPDLKLFVGNLPFSVDSAQ-L--AGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 166 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~-L--~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~ 166 (168)
..-...+++++-..+..+- | ...|+.+-.+...+++.++ .+..++++|+.|.......++...-+++.++-++++
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR 171 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVR 171 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCccee
Confidence 4456677877766655544 3 7778888888888888876 678899999999988888888776666666665543
No 165
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=42.40 E-value=11 Score=31.73 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=48.7
Q ss_pred CCEEEEeCCCCCCcH--------HHHHHHhhc--cCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 030975 93 DLKLFVGNLPFSVDS--------AQLAGLFET--AGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 153 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e--------~~L~~~F~~--~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~ 153 (168)
.+.+|+.++...... +++...|.. .+.+..+..-++......+|..|++|.....+++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 456788777655333 488889987 6778888888887678889999999999999999873
No 166
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=41.18 E-value=94 Score=19.79 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=40.1
Q ss_pred EEEEeCCCCCCcHHHHHHHhhc-cCC-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 030975 95 KLFVGNLPFSVDSAQLAGLFET-AGN-VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 153 (168)
Q Consensus 95 ~lfV~nLp~~~~e~~L~~~F~~-~G~-i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~ 153 (168)
.-|+-.++.+.+..++++.++. ||. |..|....-+ ...-=|||++...+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHH
Confidence 4567778899999999999987 663 6777666544 223359999987777766443
No 167
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=41.05 E-value=3.7 Score=35.84 Aligned_cols=72 Identities=14% Similarity=0.088 Sum_probs=54.9
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKL 163 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr 163 (168)
..+.+||.|++..++-++|..+...+-....+.+-.+.......-++.|+|...-....|+.+||+..+...
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 357799999999999999999988876666665554433344566788999888888888888888766543
No 168
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=40.87 E-value=23 Score=19.22 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=10.3
Q ss_pred CCCcHHHHHHHhhccC
Q 030975 103 FSVDSAQLAGLFETAG 118 (168)
Q Consensus 103 ~~~~e~~L~~~F~~~G 118 (168)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678999999998765
No 169
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=39.07 E-value=34 Score=22.47 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=26.9
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhc-cCCeeEEEEeecCCCCCcceEEEEEecC
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFET-AGNVEMVEVIYDKVTGRSRGFGFVTMSS 144 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~-~G~i~~v~l~~~~~tg~~~g~~FV~f~~ 144 (168)
..-||||+++..+.+.--..+-+. .++- .+.+++. +..-.||.|-++..
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEe--CCCCCCcEEEecCC
Confidence 346999999988776433333333 2332 2223332 22345799988754
No 170
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=37.59 E-value=43 Score=26.54 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=27.0
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeec
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYD 128 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~ 128 (168)
.....|+|||+.++..-+..++...-.+....++..
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeH
Confidence 345669999999999999999887655555555543
No 171
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.70 E-value=7.8 Score=33.02 Aligned_cols=58 Identities=12% Similarity=-0.117 Sum_probs=43.1
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 030975 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 153 (168)
Q Consensus 95 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~ 153 (168)
+.|+..++...++.++..+|+.||.|..+.+-+-...|..+-.+||+-.. +++..++.
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~ 62 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQ 62 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccC
Confidence 34667788888999999999999999998777665566777788887754 33344443
No 172
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=35.22 E-value=41 Score=20.82 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=22.6
Q ss_pred eEEEEEecCHHHHHHHHHHhCCceeCCcc
Q 030975 136 GFGFVTMSSVEEVEAAAQQFNGYVSNKLS 164 (168)
Q Consensus 136 g~~FV~f~~~~~a~~Al~~l~g~~~~gr~ 164 (168)
.++++.|.+..+|.+|-+.|....+.++-
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 37899999999999998887766555443
No 173
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=34.64 E-value=1.4e+02 Score=19.98 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=24.8
Q ss_pred CCcHHHHHHHhhc-cCCeeEEEEeec----CCCCCcceEEEEEecCHHHHHH
Q 030975 104 SVDSAQLAGLFET-AGNVEMVEVIYD----KVTGRSRGFGFVTMSSVEEVEA 150 (168)
Q Consensus 104 ~~~e~~L~~~F~~-~G~i~~v~l~~~----~~tg~~~g~~FV~f~~~~~a~~ 150 (168)
..+..+|++-+.. ++.=.+..++.. -..|++.|||.| |.+.+.|.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 3566777776654 554333333333 234666777765 555555543
No 174
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=33.47 E-value=62 Score=24.37 Aligned_cols=55 Identities=20% Similarity=0.165 Sum_probs=36.8
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhcc-CCeeEEEEeecCCCC--CcceEEEEEecCHHHHHHHHH
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETA-GNVEMVEVIYDKVTG--RSRGFGFVTMSSVEEVEAAAQ 153 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~-G~i~~v~l~~~~~tg--~~~g~~FV~f~~~~~a~~Al~ 153 (168)
.+++|.. .++++|.++.... |.+..+.+-+.. .+ ..+|--||+|.+.+.|.+.++
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhh
Confidence 3566665 4555565554433 577777654432 23 568899999999999998776
No 175
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=32.76 E-value=48 Score=26.02 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=29.3
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEE
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV 123 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v 123 (168)
...+...+|+-|+|...+++.|..+.+++|.+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 44567789999999999999999999999865443
No 176
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=32.45 E-value=57 Score=25.50 Aligned_cols=31 Identities=42% Similarity=0.642 Sum_probs=23.7
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhh--ccCCeeE
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFE--TAGNVEM 122 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~--~~G~i~~ 122 (168)
...-++|||||+.++..-|.+++. .+|.+..
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~ 128 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLELYRFGRVRM 128 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEE
T ss_pred CCceEEEEEecccchHHHHHHHhhcccccccce
Confidence 356789999999999999998886 3554333
No 177
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.71 E-value=1e+02 Score=26.75 Aligned_cols=59 Identities=17% Similarity=0.046 Sum_probs=42.2
Q ss_pred EEeCCCCCCcH---HHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccc
Q 030975 97 FVGNLPFSVDS---AQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 165 (168)
Q Consensus 97 fV~nLp~~~~e---~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i 165 (168)
+||||+.-... ..+.++=.+||.|-.+++-.. -.|.-.+.+.|+.|+. -+|..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 47887654332 445555568999987766322 3778889999999998 57888888874
No 178
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=28.46 E-value=1.2e+02 Score=26.02 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=30.1
Q ss_pred CCCCCEEEEeCCCCC-CcHHHHHHHhhcc----CCeeEEEEee
Q 030975 90 FSPDLKLFVGNLPFS-VDSAQLAGLFETA----GNVEMVEVIY 127 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~-~~e~~L~~~F~~~----G~i~~v~l~~ 127 (168)
.+...+|-|-|+.|+ +...+|...|+.| |.+..|.|..
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 456778999999997 8889999999875 6677776654
No 179
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=28.34 E-value=1.7e+02 Score=19.30 Aligned_cols=49 Identities=20% Similarity=0.111 Sum_probs=28.6
Q ss_pred CEEEEeCCCCCCcHHHH---HHHhhccCCeeEEEE--eecCCCCCcceEEEEEe
Q 030975 94 LKLFVGNLPFSVDSAQL---AGLFETAGNVEMVEV--IYDKVTGRSRGFGFVTM 142 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L---~~~F~~~G~i~~v~l--~~~~~tg~~~g~~FV~f 142 (168)
...|+.|||..+.+.++ +..+..++.-..|.. ......+.+.|++.+-+
T Consensus 11 g~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 11 GIAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 35689999999888665 455555554333333 11234566777766555
No 180
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=28.06 E-value=1.4e+02 Score=19.29 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=18.0
Q ss_pred eeEEEEeecCCCCCcceEEEEEecC
Q 030975 120 VEMVEVIYDKVTGRSRGFGFVTMSS 144 (168)
Q Consensus 120 i~~v~l~~~~~tg~~~g~~FV~f~~ 144 (168)
|.+|++-.-...|+.+|||=|+|.+
T Consensus 3 itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 3 ITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred cEEEEEEEecCCCCEEEEEEEEECC
Confidence 5666666655558888888888865
No 181
>PF14893 PNMA: PNMA
Probab=27.07 E-value=54 Score=26.98 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=22.1
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhc
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFET 116 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~ 116 (168)
.+..+.+.|.|+|.++++++|++.+..
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHH
Confidence 345678999999999999998887653
No 182
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=26.71 E-value=86 Score=19.32 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=21.9
Q ss_pred HHHHHHHhhccCCeeEEEEeecCCCCCcceEEEE
Q 030975 107 SAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFV 140 (168)
Q Consensus 107 e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV 140 (168)
+.+|..+|-.--.|.++.+...+.-+ +|-|||
T Consensus 32 e~eler~fl~~P~v~e~~l~EKKri~--~G~gyV 63 (64)
T PF13046_consen 32 EVELERHFLPLPEVKEVALYEKKRIR--KGAGYV 63 (64)
T ss_pred HHHhhhhccCCCCceEEEEEEEEeee--CCceeE
Confidence 45677777777889999888765434 445554
No 183
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=26.58 E-value=1.7e+02 Score=23.36 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=32.1
Q ss_pred HHHHHhhcc--CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 030975 109 QLAGLFETA--GNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155 (168)
Q Consensus 109 ~L~~~F~~~--G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l 155 (168)
-+++.|++. |.++.+ .|...|.-|+-+.+.++|+..++.|
T Consensus 44 i~~~~~~~~~~g~~~t~-------~ga~ggv~~~p~~~~~~~~~~~~~l 85 (268)
T TIGR01743 44 IIKETFEKFGIGKLLTV-------PGAAGGVKYIPKMSQAEAEEFVEEL 85 (268)
T ss_pred HHHHHHHhcCCceEEEe-------CCCCCCeEEEeCCCHHHHHHHHHHH
Confidence 478999875 455554 6889999999999999999888765
No 184
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=25.85 E-value=2.8e+02 Score=20.60 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=40.2
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCC-CCcceEEEEEecCHHHHHHHHHHh
Q 030975 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVT-GRSRGFGFVTMSSVEEVEAAAQQF 155 (168)
Q Consensus 95 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~t-g~~~g~~FV~f~~~~~a~~Al~~l 155 (168)
-=||+|....-.-..|.+.|...|. +|.++..+.. ....++-.+.+.+.++...++...
T Consensus 20 VR~ItN~SSG~~G~~lA~~~~~~Ga--~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 20 VRFITNRSSGKMGAALAEEAARRGA--EVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp SEEEEES--SHHHHHHHHHHHHTT---EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred ceEecCCCcCHHHHHHHHHHHHCCC--EEEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 3478999988888999999988886 5666665522 235688999999999988888754
No 185
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=25.66 E-value=2.2e+02 Score=19.91 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=26.9
Q ss_pred CCcHHHHHHHhhc-cCCeeEEEEeec----CCCCCcceEEEEEecCHHHHH
Q 030975 104 SVDSAQLAGLFET-AGNVEMVEVIYD----KVTGRSRGFGFVTMSSVEEVE 149 (168)
Q Consensus 104 ~~~e~~L~~~F~~-~G~i~~v~l~~~----~~tg~~~g~~FV~f~~~~~a~ 149 (168)
.++.++|++-+++ |-.-.++.++.+ -.+|++.|||.| |.+.+.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 3677888776655 332233333332 357888889976 66666655
No 186
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=25.40 E-value=1.5e+02 Score=19.69 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=14.7
Q ss_pred eeEEEEeecCCCCCcceEEEEEecC
Q 030975 120 VEMVEVIYDKVTGRSRGFGFVTMSS 144 (168)
Q Consensus 120 i~~v~l~~~~~tg~~~g~~FV~f~~ 144 (168)
|.+|++..-...|+-++||=|+|.+
T Consensus 3 ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 3 VTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred EEEEEEEEeCCCCcEEEEEEEEECC
Confidence 4555555443446667777777654
No 187
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.38 E-value=2.3e+02 Score=20.61 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=36.2
Q ss_pred CCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 030975 100 NLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155 (168)
Q Consensus 100 nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l 155 (168)
.|+..+.++-|+++-+..|-|.+.. -+| -...|.+.+...+|++.+
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEI 163 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHH
Confidence 5777888899999999999887665 333 256788999999999865
No 188
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=25.07 E-value=1.5e+02 Score=22.44 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=35.1
Q ss_pred cHHHHHHHhhccCC---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 030975 106 DSAQLAGLFETAGN---VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 161 (168)
Q Consensus 106 ~e~~L~~~F~~~G~---i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~ 161 (168)
+.+++++...+.|. |....+.. .|+.++-|...-.+.++|..+.+.|-|..+.
T Consensus 26 s~eea~~~~~~l~~~~~VvKaQvl~---GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 26 SPEEAREAAKELGGKPLVVKAQVLA---GGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SHHHHHHHHHHHTTSSEEEEE-SSS---STTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CHHHHHHHHHHhCCCcEEEEEeEee---cCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 56777777776664 44444443 3555554444456899999999989888876
No 189
>PRK11901 hypothetical protein; Reviewed
Probab=24.88 E-value=2e+02 Score=23.63 Aligned_cols=62 Identities=15% Similarity=0.092 Sum_probs=37.1
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcc-eEEEEEecCHHHHHHHHHHhCC
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSR-GFGFVTMSSVEEVEAAAQQFNG 157 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~-g~~FV~f~~~~~a~~Al~~l~g 157 (168)
..++|=+..+ -+++.|..|..+.+ +..+.+..-...|+.- -.-|=.|.+.++|++|++.|-.
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 3445544443 45778888887775 4555555443233321 1122357899999999998754
No 190
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=24.73 E-value=88 Score=24.61 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=18.6
Q ss_pred EEEEeCCCCCCcHHHHHHHhhc
Q 030975 95 KLFVGNLPFSVDSAQLAGLFET 116 (168)
Q Consensus 95 ~lfV~nLp~~~~e~~L~~~F~~ 116 (168)
-+.|+|+|+.++..-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5779999999998888888754
No 191
>PRK09213 pur operon repressor; Provisional
Probab=24.67 E-value=1.8e+02 Score=23.25 Aligned_cols=41 Identities=24% Similarity=0.412 Sum_probs=32.6
Q ss_pred HHHHHhhcc--CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 030975 109 QLAGLFETA--GNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 156 (168)
Q Consensus 109 ~L~~~F~~~--G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~ 156 (168)
-+++.|++. |.++.+ .|...|.-|+-+.+.++|+..++.|-
T Consensus 46 i~~~~~~~~~~g~~~t~-------~ga~ggv~~~p~~~~~~a~~~~~~L~ 88 (271)
T PRK09213 46 IIKETFEKQGIGTLETV-------PGAAGGVKYIPSISEEEAREFVEELC 88 (271)
T ss_pred HHHHHHHhcCCceEEEe-------CCCCCCeEEEcCCCHHHHHHHHHHHH
Confidence 478999875 455554 68899999999999999998887653
No 192
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=23.47 E-value=1.5e+02 Score=16.67 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=20.9
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccCC
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAGN 119 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G~ 119 (168)
..+++.+.....+.++|.+++..+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 45777777657788999999999886
No 193
>PRK15464 cold shock-like protein CspH; Provisional
Probab=23.08 E-value=43 Score=20.85 Aligned_cols=11 Identities=36% Similarity=0.594 Sum_probs=8.4
Q ss_pred cceEEEEEecC
Q 030975 134 SRGFGFVTMSS 144 (168)
Q Consensus 134 ~~g~~FV~f~~ 144 (168)
-+|||||+=.+
T Consensus 15 ~KGfGFI~~~~ 25 (70)
T PRK15464 15 KSGKGFIIPSD 25 (70)
T ss_pred CCCeEEEccCC
Confidence 48999997654
No 194
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=23.03 E-value=97 Score=19.40 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=28.7
Q ss_pred HHHHHHhhccCC-eeEEEEeecCCCCCcceEEEEEecCH
Q 030975 108 AQLAGLFETAGN-VEMVEVIYDKVTGRSRGFGFVTMSSV 145 (168)
Q Consensus 108 ~~L~~~F~~~G~-i~~v~l~~~~~tg~~~g~~FV~f~~~ 145 (168)
++|.+-|...|- +..+.-+..+.++.....-||+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~ 40 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPA 40 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeec
Confidence 467778888884 78888888877777777888887644
No 195
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.72 E-value=3.1e+02 Score=20.00 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=38.1
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhcc---CCeeEEEEeecCC---------CCCcce-EEEEEecCHHH
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETA---GNVEMVEVIYDKV---------TGRSRG-FGFVTMSSVEE 147 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~---G~i~~v~l~~~~~---------tg~~~g-~~FV~f~~~~~ 147 (168)
..+||+.-+...++|++.++..+.= +++..|.+-+..+ ....++ |-+|.|.+-..
T Consensus 87 ~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 87 DGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 3689999999999999999988753 5566665544321 122334 88888887554
No 196
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=22.63 E-value=2.9e+02 Score=23.15 Aligned_cols=50 Identities=10% Similarity=-0.011 Sum_probs=36.5
Q ss_pred HHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccc
Q 030975 108 AQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 165 (168)
Q Consensus 108 ~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i 165 (168)
++|.++|..---+..+...++- -|+.|.+.-+.++-+-..+|..+.|.++
T Consensus 265 ~~Le~HF~~~hy~ct~qtc~~~--------k~~vf~~~~el~~h~~~~h~~~~~~~~~ 314 (493)
T COG5236 265 EDLEAHFRNAHYCCTFQTCRVG--------KCYVFPYHTELLEHLTRFHKVNARLSEI 314 (493)
T ss_pred HHHHHHhhcCceEEEEEEEecC--------cEEEeccHHHHHHHHHHHhhcccccCcC
Confidence 5666777665555555555442 3788999999999998899988888765
No 197
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=22.48 E-value=61 Score=19.12 Aligned_cols=12 Identities=42% Similarity=0.897 Sum_probs=8.5
Q ss_pred CcceEEEEEecC
Q 030975 133 RSRGFGFVTMSS 144 (168)
Q Consensus 133 ~~~g~~FV~f~~ 144 (168)
..+|||||...+
T Consensus 6 ~~~GfGFv~~~~ 17 (58)
T PF08206_consen 6 HPKGFGFVIPDD 17 (58)
T ss_dssp -SSS-EEEEECT
T ss_pred EcCCCEEEEECC
Confidence 358999999886
No 198
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=22.04 E-value=1.2e+02 Score=18.72 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=29.5
Q ss_pred HHHHHHhhccCC-eeEEEEeecCCCCCcceEEEEEecCHHH
Q 030975 108 AQLAGLFETAGN-VEMVEVIYDKVTGRSRGFGFVTMSSVEE 147 (168)
Q Consensus 108 ~~L~~~F~~~G~-i~~v~l~~~~~tg~~~g~~FV~f~~~~~ 147 (168)
++|.+-|...|- |..+.-+..+.++...-.-||+.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~ 42 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN 42 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc
Confidence 467777777774 7788777777677778888988876544
No 199
>PRK15463 cold shock-like protein CspF; Provisional
Probab=21.46 E-value=51 Score=20.48 Aligned_cols=11 Identities=36% Similarity=0.537 Sum_probs=8.4
Q ss_pred cceEEEEEecC
Q 030975 134 SRGFGFVTMSS 144 (168)
Q Consensus 134 ~~g~~FV~f~~ 144 (168)
-+|||||+=.+
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T PRK15463 15 KSGKGLITPSD 25 (70)
T ss_pred CCceEEEecCC
Confidence 48999997654
No 200
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=21.36 E-value=52 Score=20.70 Aligned_cols=11 Identities=36% Similarity=0.960 Sum_probs=8.1
Q ss_pred CcceEEEEEec
Q 030975 133 RSRGFGFVTMS 143 (168)
Q Consensus 133 ~~~g~~FV~f~ 143 (168)
..+|||||+=.
T Consensus 11 ~~KGfGFI~~~ 21 (74)
T PRK09937 11 NAKGFGFICPE 21 (74)
T ss_pred CCCCeEEEeeC
Confidence 34899999654
No 201
>PRK10905 cell division protein DamX; Validated
Probab=20.85 E-value=3.1e+02 Score=22.56 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=36.2
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCc-ceEEEEEecCHHHHHHHHHHhCC
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRS-RGFGFVTMSSVEEVEAAAQQFNG 157 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~-~g~~FV~f~~~~~a~~Al~~l~g 157 (168)
..++|=|+.+. +++.|+++-.+.|- ....+......|+. .-.-+=.|.+.++|++|++.|-.
T Consensus 246 ~~YTLQL~A~S---s~~~l~~fakKlgL-~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 246 SHYTLQLSSSS---NYDNLNGWAKKENL-KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred CceEEEEEecC---CHHHHHHHHHHcCC-CceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 44566665554 56778877777753 33333333223331 11223357899999999998753
No 202
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=20.68 E-value=1.2e+02 Score=21.76 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=25.7
Q ss_pred eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCc
Q 030975 120 VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 158 (168)
Q Consensus 120 i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~ 158 (168)
|.++.++. ...||-||+....+++..+++.+.|.
T Consensus 36 i~~i~vp~-----~fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPP-----ELKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccC-----CCCcEEEEEEEChHHHHHHHhcCCCE
Confidence 45554442 36899999999889999999877764
No 203
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=20.66 E-value=1.3e+02 Score=21.15 Aligned_cols=32 Identities=9% Similarity=0.071 Sum_probs=23.5
Q ss_pred ceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 135 RGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 135 ~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
..+-+..+.+.. ...++..+.|..+.|+++++
T Consensus 26 ~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v 57 (145)
T PF13689_consen 26 SPFRICVLGDDP-FAEALSTLAGKQVGGRPIRV 57 (145)
T ss_pred CCeEEEEECChH-HHHHHHHhhhcccCCCcEEE
Confidence 345666666555 55678889999999999876
No 204
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=20.58 E-value=51 Score=20.33 Aligned_cols=11 Identities=55% Similarity=1.090 Sum_probs=8.3
Q ss_pred cceEEEEEecC
Q 030975 134 SRGFGFVTMSS 144 (168)
Q Consensus 134 ~~g~~FV~f~~ 144 (168)
.+|||||+=.+
T Consensus 14 ~kGyGFI~~~~ 24 (69)
T PRK09507 14 SKGFGFITPED 24 (69)
T ss_pred CCCcEEEecCC
Confidence 48999997644
No 205
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=20.51 E-value=4.1e+02 Score=23.06 Aligned_cols=49 Identities=22% Similarity=0.155 Sum_probs=34.4
Q ss_pred HHHHHHHhh----ccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 030975 107 SAQLAGLFE----TAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 156 (168)
Q Consensus 107 e~~L~~~F~----~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~ 156 (168)
..+|..+|. .+|-|.++.+-..+.. ......++.|.+.++|..|+..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKP-PVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCC-cceEEEEEECCCHHHHHHHHHHHH
Confidence 346667664 4677888776665532 345677889999999999887653
No 206
>PRK14998 cold shock-like protein CspD; Provisional
Probab=20.43 E-value=56 Score=20.49 Aligned_cols=12 Identities=33% Similarity=0.891 Sum_probs=8.7
Q ss_pred CcceEEEEEecC
Q 030975 133 RSRGFGFVTMSS 144 (168)
Q Consensus 133 ~~~g~~FV~f~~ 144 (168)
..+|||||.=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (73)
T PRK14998 11 NAKGFGFICPEG 22 (73)
T ss_pred CCCceEEEecCC
Confidence 348999997544
No 207
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=20.11 E-value=98 Score=24.87 Aligned_cols=27 Identities=19% Similarity=0.344 Sum_probs=20.6
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCCee
Q 030975 95 KLFVGNLPFSVDSAQLAGLFETAGNVE 121 (168)
Q Consensus 95 ~lfV~nLp~~~~e~~L~~~F~~~G~i~ 121 (168)
.+.|+|+|+.++...+..++.....+.
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~ 129 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFR 129 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCc
Confidence 477899999999998888886533333
No 208
>PF15063 TC1: Thyroid cancer protein 1
Probab=20.04 E-value=67 Score=20.53 Aligned_cols=49 Identities=27% Similarity=0.333 Sum_probs=32.6
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCCe---eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 030975 95 KLFVGNLPFSVDSAQLAGLFETAGNV---EMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155 (168)
Q Consensus 95 ~lfV~nLp~~~~e~~L~~~F~~~G~i---~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l 155 (168)
+--+.|+=.+++...|+.+|..-|.. +.++++.. ...+.++..+||..|
T Consensus 27 KkasaNIFe~vn~~qlqrLF~~sGD~kAEeRA~iI~~------------~~~d~ee~a~AL~~L 78 (79)
T PF15063_consen 27 KKASANIFENVNLDQLQRLFQKSGDKKAEERARIIWE------------CAQDPEEKARALMAL 78 (79)
T ss_pred hhhhhhhhhccCHHHHHHHHHHccchhHHHHHHHHHh------------hCCCHHHHHHHHHhc
Confidence 33467887889999999999999974 34445433 223566566666543
No 209
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=20.02 E-value=1.5e+02 Score=22.86 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccC
Q 030975 95 KLFVGNLPFSVDSAQLAGLFETAG 118 (168)
Q Consensus 95 ~lfV~nLp~~~~e~~L~~~F~~~G 118 (168)
-+.|+|+|+.++...+.+++...|
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 477999999999999999986444
Done!