Query 030975
Match_columns 168
No_of_seqs 244 out of 1434
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 11:29:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 9.3E-24 3.2E-28 142.3 11.3 80 89-168 15-94 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 7.2E-23 2.5E-27 140.5 11.7 77 91-167 4-80 (110)
3 3p5t_L Cleavage and polyadenyl 99.9 6.5E-23 2.2E-27 135.5 7.3 75 94-168 2-78 (90)
4 3mdf_A Peptidyl-prolyl CIS-tra 99.9 7.9E-22 2.7E-26 128.4 10.1 79 90-168 4-82 (85)
5 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.1E-21 3.7E-26 128.3 10.5 77 91-167 4-80 (87)
6 2la6_A RNA-binding protein FUS 99.9 1.7E-21 5.7E-26 130.7 11.1 81 88-168 8-96 (99)
7 1p27_B RNA-binding protein 8A; 99.9 1.3E-21 4.5E-26 132.6 10.4 80 89-168 19-98 (106)
8 2cqc_A Arginine/serine-rich sp 99.9 1.9E-21 6.4E-26 129.2 10.7 80 89-168 11-90 (95)
9 3md1_A Nuclear and cytoplasmic 99.9 1.9E-21 6.3E-26 126.1 10.5 74 94-167 2-75 (83)
10 3ulh_A THO complex subunit 4; 99.9 2E-21 6.9E-26 131.9 11.0 81 87-168 23-103 (107)
11 3ns6_A Eukaryotic translation 99.9 3.5E-22 1.2E-26 134.6 7.1 77 92-168 5-88 (100)
12 2dgo_A Cytotoxic granule-assoc 99.9 2.8E-21 9.4E-26 132.9 11.8 80 88-167 10-89 (115)
13 3n9u_C Cleavage and polyadenyl 99.9 1.3E-21 4.4E-26 142.1 10.5 78 91-168 53-132 (156)
14 2x1f_A MRNA 3'-END-processing 99.9 1.6E-21 5.4E-26 130.1 10.1 76 93-168 2-77 (96)
15 3s7r_A Heterogeneous nuclear r 99.9 2.1E-21 7.2E-26 127.1 10.4 79 89-168 7-85 (87)
16 2cq0_A Eukaryotic translation 99.9 1.8E-21 6.1E-26 131.4 10.2 79 89-167 11-89 (103)
17 2dnz_A Probable RNA-binding pr 99.9 2.1E-21 7.1E-26 129.1 10.3 77 91-167 3-79 (95)
18 2cpz_A CUG triplet repeat RNA- 99.9 2.8E-21 9.6E-26 133.0 11.0 79 89-167 21-99 (115)
19 1whw_A Hypothetical protein ri 99.9 1.8E-21 6.2E-26 130.4 9.8 78 90-167 5-82 (99)
20 2dgs_A DAZ-associated protein 99.9 2.6E-21 8.8E-26 129.7 10.6 79 89-168 6-84 (99)
21 2lxi_A RNA-binding protein 10; 99.9 2.9E-22 1E-26 132.9 5.7 74 94-167 2-77 (91)
22 4f25_A Polyadenylate-binding p 99.9 2.3E-21 7.7E-26 133.8 10.3 73 93-167 5-77 (115)
23 1x5u_A Splicing factor 3B subu 99.9 2.2E-21 7.7E-26 131.2 10.1 80 89-168 11-90 (105)
24 2e5h_A Zinc finger CCHC-type a 99.9 2.6E-21 9E-26 128.3 10.0 79 89-167 12-90 (94)
25 1x4e_A RNA binding motif, sing 99.9 6.8E-22 2.3E-26 128.9 6.9 77 91-167 3-79 (85)
26 2dnm_A SRP46 splicing factor; 99.9 1.5E-21 5E-26 131.8 8.6 80 89-168 9-88 (103)
27 1x5s_A Cold-inducible RNA-bind 99.9 2.6E-21 8.8E-26 130.3 9.8 79 89-167 8-86 (102)
28 2lkz_A RNA-binding protein 5; 99.9 7.1E-22 2.4E-26 132.2 6.9 76 92-167 8-89 (95)
29 2khc_A Testis-specific RNP-typ 99.9 2.2E-21 7.5E-26 134.0 9.3 80 89-168 36-115 (118)
30 2cpf_A RNA binding motif prote 99.9 3.2E-21 1.1E-25 128.9 9.7 78 91-168 3-83 (98)
31 2div_A TRNA selenocysteine ass 99.9 5.4E-21 1.9E-25 128.0 10.8 76 89-164 5-81 (99)
32 1oo0_B CG8781-PA, drosophila Y 99.9 3.3E-21 1.1E-25 131.5 9.9 79 89-167 22-100 (110)
33 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.9E-21 6.6E-26 130.9 8.4 79 89-167 8-86 (102)
34 2do4_A Squamous cell carcinoma 99.9 6.1E-21 2.1E-25 128.1 10.7 77 90-167 14-90 (100)
35 1x4h_A RNA-binding protein 28; 99.9 5E-21 1.7E-25 130.6 10.4 80 89-168 11-96 (111)
36 2jrs_A RNA-binding protein 39; 99.9 5.4E-21 1.8E-25 130.6 10.5 79 89-167 22-100 (108)
37 1x5t_A Splicing factor 3B subu 99.9 2.5E-21 8.6E-26 128.9 8.5 77 91-167 3-80 (96)
38 1s79_A Lupus LA protein; RRM, 99.8 2.8E-21 9.6E-26 131.1 8.6 76 91-168 9-84 (103)
39 2kt5_A RNA and export factor-b 99.8 1.4E-20 4.7E-25 131.2 12.4 79 88-167 30-108 (124)
40 2kxn_B Transformer-2 protein h 99.8 4.7E-21 1.6E-25 134.9 10.0 80 89-168 42-121 (129)
41 2dgp_A Bruno-like 4, RNA bindi 99.8 3.7E-21 1.3E-25 130.3 9.2 80 89-168 9-91 (106)
42 2ywk_A Putative RNA-binding pr 99.8 6.2E-21 2.1E-25 126.7 9.9 79 89-168 12-90 (95)
43 2cph_A RNA binding motif prote 99.8 6.4E-21 2.2E-25 129.3 10.1 80 89-168 11-92 (107)
44 2dng_A Eukaryotic translation 99.8 9.3E-21 3.2E-25 127.9 10.7 78 89-168 11-88 (103)
45 2dhg_A TRNA selenocysteine ass 99.8 1.1E-20 3.7E-25 127.6 10.9 78 90-168 6-85 (104)
46 2cpe_A RNA-binding protein EWS 99.8 5.6E-21 1.9E-25 131.0 9.5 80 89-168 11-98 (113)
47 2dnh_A Bruno-like 5, RNA bindi 99.8 1.3E-20 4.5E-25 127.4 11.2 77 90-167 12-91 (105)
48 1u6f_A Tcubp1, RNA-binding pro 99.8 9.8E-21 3.3E-25 134.2 11.0 79 89-167 38-116 (139)
49 3ex7_B RNA-binding protein 8A; 99.8 4.9E-21 1.7E-25 133.7 9.2 81 88-168 17-97 (126)
50 2cqp_A RNA-binding protein 12; 99.8 4.1E-21 1.4E-25 128.4 8.4 80 89-168 11-90 (98)
51 4a8x_A RNA-binding protein wit 99.8 7.4E-21 2.5E-25 124.4 9.4 76 92-167 3-79 (88)
52 2mss_A Protein (musashi1); RNA 99.8 1.9E-21 6.4E-26 123.9 6.3 73 95-168 1-73 (75)
53 2ek1_A RNA-binding protein 12; 99.8 3E-21 1E-25 128.2 7.4 77 91-167 13-89 (95)
54 3ucg_A Polyadenylate-binding p 99.8 9.9E-21 3.4E-25 124.2 9.7 74 93-167 6-79 (89)
55 2d9p_A Polyadenylate-binding p 99.8 1.2E-20 4E-25 127.3 10.2 77 89-167 11-87 (103)
56 2fy1_A RNA-binding motif prote 99.8 8E-21 2.7E-25 131.3 9.6 77 90-167 4-80 (116)
57 1p1t_A Cleavage stimulation fa 99.8 2.3E-21 7.9E-26 130.9 6.7 77 92-168 7-83 (104)
58 2dh8_A DAZ-associated protein 99.8 1.1E-20 3.8E-25 127.9 9.8 79 89-168 12-90 (105)
59 2krb_A Eukaryotic translation 99.8 5.6E-21 1.9E-25 123.7 7.8 73 93-167 1-80 (81)
60 2cqd_A RNA-binding region cont 99.8 1.3E-20 4.4E-25 129.8 10.1 78 89-167 13-90 (116)
61 2m2b_A RNA-binding protein 10; 99.8 1.7E-21 5.8E-26 137.3 5.7 79 89-168 19-103 (131)
62 2do0_A HnRNP M, heterogeneous 99.8 3E-20 1E-24 127.4 11.7 79 89-168 11-89 (114)
63 2dgv_A HnRNP M, heterogeneous 99.8 2.1E-20 7.3E-25 123.4 10.6 76 90-167 5-80 (92)
64 2dgx_A KIAA0430 protein; RRM d 99.8 1.5E-20 5.1E-25 125.6 9.4 77 89-168 5-85 (96)
65 2cq3_A RNA-binding protein 9; 99.8 4.4E-20 1.5E-24 124.5 11.7 79 88-168 10-88 (103)
66 1wi8_A EIF-4B, eukaryotic tran 99.8 1.4E-20 4.9E-25 127.2 9.3 77 90-168 12-89 (104)
67 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.2E-20 1.1E-24 134.2 11.7 79 89-167 35-113 (156)
68 2cq4_A RNA binding motif prote 99.8 4.8E-21 1.6E-25 131.6 6.8 76 92-168 24-99 (114)
69 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.2E-20 7.6E-25 132.2 10.2 80 89-168 59-138 (140)
70 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.2E-20 1.8E-24 124.1 11.1 78 89-168 11-88 (103)
71 1uaw_A Mouse-musashi-1; RNP-ty 99.8 4.4E-21 1.5E-25 122.6 5.4 74 94-168 1-74 (77)
72 2rs2_A Musashi-1, RNA-binding 99.8 1.5E-20 5.2E-25 128.5 8.2 79 89-168 21-99 (109)
73 2ki2_A SS-DNA binding protein 99.8 3.5E-21 1.2E-25 126.8 4.6 74 94-168 2-75 (90)
74 2dgw_A Probable RNA-binding pr 99.8 5.7E-20 2E-24 121.2 10.4 76 89-167 6-81 (91)
75 2cqg_A TDP-43, TAR DNA-binding 99.8 9.3E-20 3.2E-24 122.9 11.5 78 89-168 11-88 (103)
76 1wg5_A Heterogeneous nuclear r 99.8 3.6E-20 1.2E-24 125.5 9.2 77 89-167 11-88 (104)
77 2nlw_A Eukaryotic translation 99.8 2.9E-20 1E-24 126.1 8.6 76 90-167 12-94 (105)
78 2cpy_A RNA-binding protein 12; 99.8 1.8E-20 6E-25 129.0 7.5 77 89-167 11-88 (114)
79 2kn4_A Immunoglobulin G-bindin 99.8 3.7E-20 1.3E-24 133.8 9.6 80 89-168 66-145 (158)
80 2jwn_A Embryonic polyadenylate 99.8 4E-20 1.4E-24 128.7 9.4 74 93-167 36-109 (124)
81 2err_A Ataxin-2-binding protei 99.8 3.9E-20 1.3E-24 126.4 9.0 78 89-168 25-102 (109)
82 2db1_A Heterogeneous nuclear r 99.8 3.2E-20 1.1E-24 128.6 8.7 76 90-167 14-92 (118)
83 2hgl_A HNRPF protein, heteroge 99.8 1.8E-20 6.2E-25 133.1 7.6 78 89-168 40-120 (136)
84 2j76_E EIF-4B, EIF4B, eukaryot 99.8 9.8E-21 3.4E-25 127.4 5.9 77 89-167 15-92 (100)
85 2cpi_A CCR4-NOT transcription 99.8 3.3E-20 1.1E-24 127.1 8.6 79 89-167 11-95 (111)
86 2wbr_A GW182, gawky, LD47780P; 99.8 2.9E-20 1E-24 121.9 7.7 70 93-168 7-76 (89)
87 3q2s_C Cleavage and polyadenyl 99.8 2.4E-20 8.3E-25 143.2 8.5 77 92-168 67-145 (229)
88 1x5o_A RNA binding motif, sing 99.8 1.1E-19 3.8E-24 124.6 10.8 74 90-164 22-95 (114)
89 1sjq_A Polypyrimidine tract-bi 99.8 8.5E-20 2.9E-24 124.0 9.8 73 90-168 13-87 (105)
90 1wel_A RNA-binding protein 12; 99.8 2.1E-20 7.1E-25 130.4 6.8 77 90-167 22-98 (124)
91 2dis_A Unnamed protein product 99.8 4.5E-20 1.5E-24 125.6 8.2 77 91-167 6-86 (109)
92 1wez_A HnRNP H', FTP-3, hetero 99.8 4E-20 1.4E-24 125.1 7.8 76 89-167 11-86 (102)
93 1x4b_A Heterogeneous nuclear r 99.8 4.9E-20 1.7E-24 126.9 8.4 76 92-168 26-101 (116)
94 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.7E-19 5.9E-24 131.6 11.6 79 89-167 68-146 (165)
95 1iqt_A AUF1, heterogeneous nuc 99.8 1E-20 3.5E-25 120.4 4.4 73 95-168 1-73 (75)
96 2lmi_A GRSF-1, G-rich sequence 99.8 2.2E-20 7.5E-25 127.2 6.0 77 89-167 7-86 (107)
97 2f3j_A RNA and export factor b 99.8 1.7E-19 5.8E-24 133.4 11.1 79 88-167 83-161 (177)
98 1x4a_A Splicing factor, argini 99.8 2.9E-19 9.8E-24 121.7 11.3 76 89-167 18-93 (109)
99 2jvr_A Nucleolar protein 3; RN 99.8 6.5E-20 2.2E-24 126.0 7.8 75 90-168 25-100 (111)
100 4f02_A Polyadenylate-binding p 99.8 2.2E-19 7.6E-24 135.8 11.3 77 91-167 13-89 (213)
101 2j8a_A Histone-lysine N-methyl 99.8 6.3E-20 2.2E-24 128.1 7.5 75 94-168 3-91 (136)
102 2lea_A Serine/arginine-rich sp 99.8 2.7E-20 9.4E-25 131.9 5.8 79 90-168 44-122 (135)
103 2dnn_A RNA-binding protein 12; 99.8 7.6E-20 2.6E-24 125.2 7.3 73 92-167 15-87 (109)
104 2fc9_A NCL protein; structure 99.8 2.2E-19 7.5E-24 120.6 9.0 75 89-167 11-85 (101)
105 1x4c_A Splicing factor, argini 99.8 4.4E-19 1.5E-23 120.8 9.9 72 89-167 11-87 (108)
106 2a3j_A U1 small nuclear ribonu 99.8 3.8E-19 1.3E-23 124.9 9.8 75 90-167 26-104 (127)
107 1fj7_A Nucleolin RBD1, protein 99.8 1.8E-20 6.2E-25 126.0 2.9 76 90-167 14-89 (101)
108 2cpx_A Hypothetical protein FL 99.8 4.9E-20 1.7E-24 126.5 5.0 78 90-167 22-99 (115)
109 2fc8_A NCL protein; structure 99.8 5E-19 1.7E-23 119.0 9.6 76 89-167 11-86 (102)
110 2la4_A Nuclear and cytoplasmic 99.8 6.3E-19 2.1E-23 118.4 10.1 72 91-168 25-96 (101)
111 2dnq_A RNA-binding protein 4B; 99.8 6.4E-19 2.2E-23 116.0 9.9 70 90-167 5-74 (90)
112 2cq1_A PTB-like protein L; RRM 99.8 7.9E-19 2.7E-23 118.6 10.4 73 89-167 11-85 (101)
113 2xs2_A Deleted in azoospermia- 99.8 1E-19 3.4E-24 122.5 5.8 73 92-167 8-80 (102)
114 2ad9_A Polypyrimidine tract-bi 99.8 5.1E-19 1.7E-23 122.8 9.5 73 89-167 27-101 (119)
115 2dha_A FLJ20171 protein; RRM d 99.8 1.5E-19 5.2E-24 126.3 6.9 75 91-167 21-99 (123)
116 2ytc_A PRE-mRNA-splicing facto 99.8 8.9E-19 3E-23 113.9 10.1 73 89-167 8-81 (85)
117 2cpj_A Non-POU domain-containi 99.8 4.3E-19 1.5E-23 118.8 8.8 74 88-167 10-83 (99)
118 2lcw_A RNA-binding protein FUS 99.7 7.4E-21 2.5E-25 131.1 0.0 79 90-168 4-90 (116)
119 2hgm_A HNRPF protein, heteroge 99.8 2.9E-19 9.8E-24 125.3 7.6 77 89-168 38-116 (126)
120 1fxl_A Paraneoplastic encephal 99.8 1.2E-18 4.2E-23 125.5 11.0 75 93-167 2-76 (167)
121 3r27_A HnRNP L, heterogeneous 99.8 6.6E-19 2.2E-23 118.6 8.9 73 89-167 17-91 (100)
122 1x4d_A Matrin 3; structural ge 99.8 3.5E-19 1.2E-23 120.5 7.6 72 90-167 12-86 (102)
123 2e5j_A Methenyltetrahydrofolat 99.8 6.4E-19 2.2E-23 117.7 8.7 73 90-167 16-88 (97)
124 3lqv_A PRE-mRNA branch site pr 99.8 1.1E-18 3.8E-23 119.8 10.1 74 91-167 6-79 (115)
125 1x4g_A Nucleolysin TIAR; struc 99.8 8.9E-19 3.1E-23 119.3 9.5 72 91-168 23-94 (109)
126 1wex_A Hypothetical protein (r 99.8 8.4E-19 2.9E-23 119.1 9.2 73 89-167 11-85 (104)
127 3md3_A Nuclear and cytoplasmic 99.8 2.4E-18 8.1E-23 123.8 11.8 79 89-167 83-161 (166)
128 1nu4_A U1A RNA binding domain; 99.8 3E-19 1E-23 119.0 6.4 75 90-167 5-83 (97)
129 1b7f_A Protein (SXL-lethal pro 99.8 1E-18 3.4E-23 126.3 9.7 76 92-167 2-77 (168)
130 2jvo_A Nucleolar protein 3; nu 99.8 1.3E-18 4.5E-23 118.7 9.6 71 89-167 27-97 (108)
131 1why_A Hypothetical protein ri 99.8 1.3E-18 4.4E-23 116.1 9.3 72 90-167 14-87 (97)
132 2e5g_A U6 snRNA-specific termi 99.8 2.2E-18 7.4E-23 114.4 10.3 72 91-168 6-77 (94)
133 2xnq_A Nuclear polyadenylated 99.8 3E-18 1E-22 114.6 10.5 71 89-167 18-89 (97)
134 1fjc_A Nucleolin RBD2, protein 99.8 4.2E-19 1.4E-23 118.1 6.2 73 90-167 13-85 (96)
135 2dnl_A Cytoplasmic polyadenyla 99.8 5.6E-19 1.9E-23 121.5 7.0 65 90-155 5-72 (114)
136 2hvz_A Splicing factor, argini 99.8 4.9E-19 1.7E-23 118.9 6.4 69 94-167 1-69 (101)
137 2g4b_A Splicing factor U2AF 65 99.8 2.6E-18 9E-23 124.7 10.7 78 91-168 92-169 (172)
138 2dgu_A Heterogeneous nuclear r 99.8 2.1E-18 7.3E-23 116.3 9.4 71 89-167 7-77 (103)
139 1l3k_A Heterogeneous nuclear r 99.8 2E-18 6.9E-23 127.8 10.1 78 89-167 9-86 (196)
140 2hgn_A Heterogeneous nuclear r 99.8 1.4E-19 4.6E-24 129.1 3.4 76 89-167 42-117 (139)
141 2cpd_A Apobec-1 stimulating pr 99.8 4.7E-18 1.6E-22 113.7 10.7 73 87-167 9-83 (99)
142 2dgt_A RNA-binding protein 30; 99.8 3.3E-18 1.1E-22 113.0 9.6 72 89-168 6-77 (92)
143 2dnp_A RNA-binding protein 14; 99.8 3E-18 1E-22 112.7 9.2 71 89-167 5-75 (90)
144 3beg_B Splicing factor, argini 99.8 1.1E-18 3.6E-23 120.3 7.2 68 91-165 14-81 (115)
145 2i2y_A Fusion protein consists 99.8 2E-18 6.9E-23 123.9 8.8 75 88-167 68-142 (150)
146 2kvi_A Nuclear polyadenylated 99.8 2.6E-18 9E-23 114.5 8.6 71 89-167 6-77 (96)
147 2qfj_A FBP-interacting repress 99.8 4.7E-18 1.6E-22 127.6 10.9 77 91-167 123-199 (216)
148 1wf1_A RNA-binding protein RAL 99.8 3.1E-18 1.1E-22 116.8 9.0 69 91-167 25-94 (110)
149 2e44_A Insulin-like growth fac 99.8 2.4E-18 8.2E-23 114.4 8.3 75 90-168 12-87 (96)
150 3pgw_S U1-70K; protein-RNA com 99.8 3.3E-18 1.1E-22 142.4 10.5 78 91-168 100-177 (437)
151 3egn_A RNA-binding protein 40; 99.8 7.5E-19 2.6E-23 125.2 5.6 79 89-167 41-124 (143)
152 1whx_A Hypothetical protein ri 99.8 2.3E-18 8E-23 117.9 7.8 70 92-167 9-78 (111)
153 1wg1_A KIAA1579 protein, homol 99.8 3E-18 1E-22 112.5 8.0 70 91-167 3-72 (88)
154 2hzc_A Splicing factor U2AF 65 99.7 3.5E-18 1.2E-22 111.4 7.8 71 91-168 4-85 (87)
155 4f02_A Polyadenylate-binding p 99.7 6.4E-18 2.2E-22 127.7 10.4 75 92-168 102-176 (213)
156 2qfj_A FBP-interacting repress 99.7 4.9E-18 1.7E-22 127.5 9.7 76 92-167 27-102 (216)
157 2yh0_A Splicing factor U2AF 65 99.7 7.3E-18 2.5E-22 125.0 10.4 78 90-167 111-188 (198)
158 2cqh_A IGF-II mRNA-binding pro 99.7 2.7E-18 9.4E-23 113.5 7.3 71 90-167 5-77 (93)
159 1x4f_A Matrin 3; structural ge 99.7 4.8E-18 1.6E-22 116.7 8.5 72 90-167 22-96 (112)
160 1x5p_A Negative elongation fac 99.7 1.3E-17 4.4E-22 111.3 10.2 71 89-167 11-81 (97)
161 3md3_A Nuclear and cytoplasmic 99.7 6E-18 2.1E-22 121.7 9.0 73 94-167 1-73 (166)
162 1b7f_A Protein (SXL-lethal pro 99.7 1.7E-17 5.9E-22 119.8 11.3 79 90-168 86-166 (168)
163 3nmr_A Cugbp ELAV-like family 99.7 1.4E-17 4.7E-22 120.9 9.8 70 92-161 2-73 (175)
164 1l3k_A Heterogeneous nuclear r 99.7 1.6E-17 5.6E-22 122.9 10.3 77 91-168 102-178 (196)
165 1fxl_A Paraneoplastic encephal 99.7 2E-17 6.8E-22 119.1 10.2 75 91-165 86-160 (167)
166 2cq2_A Hypothetical protein LO 99.7 7.1E-18 2.4E-22 116.1 7.3 71 91-167 23-100 (114)
167 2cjk_A Nuclear polyadenylated 99.7 4.1E-18 1.4E-22 123.1 6.5 75 93-168 87-161 (167)
168 2cjk_A Nuclear polyadenylated 99.7 9.2E-18 3.1E-22 121.3 7.3 74 92-167 2-75 (167)
169 3nmr_A Cugbp ELAV-like family 99.7 2.9E-17 1E-21 119.2 10.0 77 91-168 93-172 (175)
170 3tyt_A Heterogeneous nuclear r 99.7 1.7E-17 6E-22 125.2 9.0 71 92-167 3-74 (205)
171 2voo_A Lupus LA protein; RNA-b 99.7 2.7E-17 9.3E-22 123.1 10.0 74 93-168 109-182 (193)
172 1sjr_A Polypyrimidine tract-bi 99.7 3.7E-17 1.3E-21 119.1 9.3 73 91-167 44-118 (164)
173 2pe8_A Splicing factor 45; RRM 99.7 1.1E-16 3.9E-21 108.6 11.0 77 91-167 6-88 (105)
174 2diu_A KIAA0430 protein; struc 99.7 5.6E-17 1.9E-21 107.3 8.8 66 92-167 7-78 (96)
175 3zzy_A Polypyrimidine tract-bi 99.7 7.6E-17 2.6E-21 113.3 9.9 73 90-167 25-100 (130)
176 3d2w_A TAR DNA-binding protein 99.7 3.7E-17 1.3E-21 107.7 7.8 70 89-167 7-78 (89)
177 3pgw_A U1-A; protein-RNA compl 99.7 9E-17 3.1E-21 125.7 10.4 76 89-167 5-84 (282)
178 2e5i_A Heterogeneous nuclear r 99.7 1.5E-16 5E-21 111.2 10.3 70 92-167 24-96 (124)
179 2bz2_A Negative elongation fac 99.7 1E-16 3.6E-21 111.4 8.7 70 90-167 36-105 (121)
180 3smz_A Protein raver-1, ribonu 99.7 3.9E-16 1.3E-20 122.2 11.7 76 92-167 94-169 (284)
181 1wf0_A TDP-43, TAR DNA-binding 99.7 4.4E-17 1.5E-21 106.7 4.4 70 91-167 3-72 (88)
182 3tyt_A Heterogeneous nuclear r 99.7 1.8E-16 6.3E-21 119.5 8.3 72 91-164 121-194 (205)
183 2adc_A Polypyrimidine tract-bi 99.7 3.3E-16 1.1E-20 119.5 9.3 73 90-167 31-104 (229)
184 1fje_B Nucleolin RBD12, protei 99.7 2.4E-16 8.2E-21 114.8 8.1 73 90-167 96-168 (175)
185 3smz_A Protein raver-1, ribonu 99.7 5.5E-16 1.9E-20 121.3 10.4 77 90-167 181-258 (284)
186 3u1l_A PRE-mRNA-splicing facto 99.6 3.1E-16 1.1E-20 120.9 8.1 73 90-168 131-224 (240)
187 2ghp_A U4/U6 snRNA-associated 99.6 4.8E-16 1.6E-20 122.1 8.8 78 89-167 206-285 (292)
188 1fje_B Nucleolin RBD12, protei 99.6 5.1E-17 1.7E-21 118.4 2.6 77 89-167 9-85 (175)
189 3pgw_A U1-A; protein-RNA compl 99.6 1.4E-15 4.9E-20 118.8 10.6 74 89-167 203-277 (282)
190 1jmt_A Splicing factor U2AF 35 99.6 1.8E-16 6.2E-21 107.4 4.6 69 98-167 20-100 (104)
191 1qm9_A Polypyrimidine tract-bi 99.6 3.8E-16 1.3E-20 116.1 6.4 70 93-167 3-73 (198)
192 3sde_A Paraspeckle component 1 99.6 1.7E-15 5.7E-20 117.8 9.1 74 88-167 17-90 (261)
193 2dit_A HIV TAT specific factor 99.6 5.3E-15 1.8E-19 101.1 10.6 75 89-167 11-96 (112)
194 3sde_A Paraspeckle component 1 99.6 3.2E-15 1.1E-19 116.2 10.5 76 91-167 94-173 (261)
195 3v4m_A Splicing factor U2AF 65 99.6 3E-15 1E-19 101.6 8.6 76 92-167 4-91 (105)
196 2ghp_A U4/U6 snRNA-associated 99.6 2.2E-15 7.4E-20 118.3 8.4 76 91-167 115-191 (292)
197 2yh0_A Splicing factor U2AF 65 99.6 1.5E-16 5.2E-21 117.8 1.6 69 92-167 3-82 (198)
198 3ue2_A Poly(U)-binding-splicin 99.6 8.3E-15 2.8E-19 101.4 9.6 76 92-167 19-103 (118)
199 2g4b_A Splicing factor U2AF 65 99.6 5.4E-15 1.9E-19 107.0 8.0 69 92-167 3-82 (172)
200 1qm9_A Polypyrimidine tract-bi 99.6 6E-15 2.1E-19 109.5 8.0 72 91-167 118-191 (198)
201 2adc_A Polypyrimidine tract-bi 99.6 1.8E-14 6.1E-19 109.9 9.7 72 91-167 149-222 (229)
202 3tht_A Alkylated DNA repair pr 99.5 3.5E-14 1.2E-18 114.6 8.1 66 90-161 15-82 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.4 8.3E-13 2.8E-17 88.7 10.1 58 103-167 27-84 (100)
204 3s6e_A RNA-binding protein 39; 99.4 8.5E-13 2.9E-17 90.7 9.3 72 92-167 6-87 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 1E-11 3.5E-16 86.0 8.1 74 88-167 13-90 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.2 2.9E-11 9.8E-16 79.2 7.3 69 91-168 5-81 (91)
207 3dxb_A Thioredoxin N-terminall 99.2 6E-11 2.1E-15 89.8 7.9 62 106-167 142-207 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.1 5.5E-11 1.9E-15 78.3 5.4 70 90-168 12-90 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.7 9.1E-08 3.1E-12 64.4 8.6 71 91-167 19-94 (117)
210 1wey_A Calcipressin 1; structu 98.0 1.6E-05 5.6E-10 53.0 7.1 71 91-167 3-78 (104)
211 1uw4_A UPF3X; nonsense mediate 97.8 0.00017 5.9E-09 47.0 8.7 69 94-162 2-72 (91)
212 2dhx_A Poly (ADP-ribose) polym 97.7 0.00037 1.3E-08 46.2 9.4 69 90-167 5-78 (104)
213 1wwh_A Nucleoporin 35, nucleop 97.7 0.00017 6E-09 49.2 7.9 66 91-164 22-87 (119)
214 1whv_A Poly(A)-specific ribonu 97.6 0.00039 1.3E-08 45.7 8.0 55 92-155 15-69 (100)
215 3p3d_A Nucleoporin 53; structu 97.2 0.00041 1.4E-08 48.0 4.6 74 92-167 6-93 (132)
216 3ctr_A Poly(A)-specific ribonu 97.1 0.0011 3.7E-08 43.7 5.5 53 96-156 8-60 (101)
217 2l08_A Regulator of nonsense t 96.9 0.001 3.4E-08 43.8 4.2 71 93-163 9-81 (97)
218 3pq1_A Poly(A) RNA polymerase; 96.6 0.0013 4.5E-08 54.8 3.7 55 93-153 53-107 (464)
219 3d45_A Poly(A)-specific ribonu 93.1 0.4 1.4E-05 40.3 8.4 55 93-156 440-494 (507)
220 4f25_A Polyadenylate-binding p 79.3 0.32 1.1E-05 32.0 -0.4 19 91-109 95-113 (115)
221 4e8u_A Putative uncharacterize 57.8 28 0.00096 24.8 5.9 56 95-153 14-81 (172)
222 2g0c_A ATP-dependent RNA helic 52.1 34 0.0012 20.2 5.0 64 95-167 2-71 (76)
223 3ts2_A Protein LIN-28 homolog 44.2 3.6 0.00012 28.6 -0.6 28 108-143 2-29 (148)
224 3fut_A Dimethyladenosine trans 38.3 29 0.00098 26.3 3.6 33 94-127 111-143 (271)
225 3uzu_A Ribosomal RNA small sub 36.4 14 0.00048 28.2 1.6 35 94-128 115-149 (279)
226 1xn9_A 30S ribosomal protein S 35.4 88 0.003 20.1 5.2 47 104-151 29-80 (101)
227 3mfb_A Uncharacterized protein 35.0 71 0.0024 22.3 4.9 37 105-141 3-42 (157)
228 2v94_A RPS24, 30S ribosomal pr 32.2 1E+02 0.0036 20.0 5.3 46 104-150 38-88 (107)
229 2i9x_A Putative septation prot 31.8 75 0.0026 19.9 4.2 26 119-144 5-30 (87)
230 1ywx_A 30S ribosomal protein S 30.8 1.1E+02 0.0037 19.7 5.5 47 103-150 28-79 (102)
231 3lpe_A Putative transcription 30.0 40 0.0014 21.1 2.7 34 120-158 40-73 (92)
232 3tqs_A Ribosomal RNA small sub 29.9 19 0.00063 27.1 1.3 33 96-128 99-131 (255)
233 1i4w_A Mitochondrial replicati 29.1 54 0.0019 26.0 3.9 22 95-116 144-165 (353)
234 3h7h_B Transcription elongatio 28.1 37 0.0013 22.1 2.3 27 132-158 48-74 (106)
235 3ftd_A Dimethyladenosine trans 28.0 57 0.002 24.1 3.7 32 95-126 97-128 (249)
236 2ia9_A Putative septation prot 26.9 99 0.0034 19.9 4.2 26 119-144 5-30 (100)
237 1qyr_A KSGA, high level kasuga 26.8 72 0.0025 23.7 4.1 31 95-125 92-122 (252)
238 2i9z_A Putative septation prot 26.4 1E+02 0.0036 20.0 4.2 26 119-144 5-30 (105)
239 4eyt_A Telomerase associated p 24.5 1.4E+02 0.0048 18.9 8.2 57 91-155 10-66 (129)
240 1o57_A PUR operon repressor; p 23.5 2E+02 0.0068 21.8 6.2 41 110-155 47-87 (291)
241 4bby_A Alkyldihydroxyacetoneph 23.4 89 0.0031 26.8 4.5 54 101-155 351-408 (658)
242 3ulj_A LIN28B, DNA-binding pro 22.4 66 0.0023 20.2 2.7 9 134-142 19-27 (90)
243 2k5n_A Putative cold-shock pro 21.2 35 0.0012 20.5 1.1 11 134-144 13-23 (74)
244 3cam_A Cold-shock domain famil 20.0 39 0.0013 19.8 1.1 11 134-144 12-22 (67)
245 2kcm_A Cold shock domain famil 20.0 39 0.0013 20.4 1.1 11 134-144 11-21 (74)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=9.3e-24 Score=142.34 Aligned_cols=80 Identities=31% Similarity=0.496 Sum_probs=75.4
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...++++|||+|||.++++++|+++|++||.|..|++++|+.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 15 ~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 15 LYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp -CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999873
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.89 E-value=7.2e-23 Score=140.52 Aligned_cols=77 Identities=17% Similarity=0.144 Sum_probs=74.3
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.+.++|||+||++++++++|+++|++||.|.+|.|++|+.||+++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V 80 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHA 80 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.88 E-value=6.5e-23 Score=135.50 Aligned_cols=75 Identities=17% Similarity=0.350 Sum_probs=70.2
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAG--NVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G--~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
.+|||+|||+++++++|+++|++|| .|..++++.|+.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEE
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999874
No 4
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.87 E-value=7.9e-22 Score=128.41 Aligned_cols=79 Identities=25% Similarity=0.340 Sum_probs=75.0
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
..+.++|||+|||.++++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3567899999999999999999999999999999999998899999999999999999999999999999999999863
No 5
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=128.31 Aligned_cols=77 Identities=29% Similarity=0.480 Sum_probs=73.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.+.++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 80 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 80 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999986
No 6
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.87 E-value=1.7e-21 Score=130.71 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=76.2
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeE--------EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce
Q 030975 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--------VEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV 159 (168)
Q Consensus 88 ~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~--------v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~ 159 (168)
......++|||+|||.++++++|+++|++||.|.. ++++.++.+|+++|||||+|.+.++|++|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34556789999999999999999999999999999 9999999899999999999999999999999999999
Q ss_pred eCCccceeC
Q 030975 160 SNKLSPKKK 168 (168)
Q Consensus 160 ~~gr~i~~k 168 (168)
++|+.|+++
T Consensus 88 ~~g~~l~V~ 96 (99)
T 2la6_A 88 FSGNPIKVS 96 (99)
T ss_dssp SSSSBCEEE
T ss_pred eCCcEEEEE
Confidence 999999873
No 7
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.3e-21 Score=132.59 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=75.4
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...+.++|||+|||.++++++|+++|+.||.|..|.++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999863
No 8
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.9e-21 Score=129.18 Aligned_cols=80 Identities=28% Similarity=0.417 Sum_probs=75.6
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...+.++|||+|||.++++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999999899999999999999999999999999999999999863
No 9
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.86 E-value=1.9e-21 Score=126.10 Aligned_cols=74 Identities=31% Similarity=0.501 Sum_probs=71.9
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.+|||+|||.++++++|+++|+.||.|..+.+++++.+|+++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 75 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 75 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999986
No 10
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.86 E-value=2e-21 Score=131.88 Aligned_cols=81 Identities=30% Similarity=0.430 Sum_probs=75.8
Q ss_pred CCCCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccce
Q 030975 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 166 (168)
Q Consensus 87 ~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~ 166 (168)
.......++|||+|||.++++++|+++|++||.|..|.++.++ +|+++|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3455678999999999999999999999999999999999998 999999999999999999999999999999999998
Q ss_pred eC
Q 030975 167 KK 168 (168)
Q Consensus 167 ~k 168 (168)
++
T Consensus 102 V~ 103 (107)
T 3ulh_A 102 IQ 103 (107)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 11
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.86 E-value=3.5e-22 Score=134.61 Aligned_cols=77 Identities=27% Similarity=0.382 Sum_probs=73.5
Q ss_pred CCCEEEEeCCCC------CCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC-cc
Q 030975 92 PDLKLFVGNLPF------SVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK-LS 164 (168)
Q Consensus 92 ~~~~lfV~nLp~------~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~g-r~ 164 (168)
..++|||+|||. ++++++|+++|++||.|..|.|++++.||+++|||||+|.+.++|++|++.|||..++| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 367999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred ceeC
Q 030975 165 PKKK 168 (168)
Q Consensus 165 i~~k 168 (168)
|+++
T Consensus 85 l~V~ 88 (100)
T 3ns6_A 85 LFLY 88 (100)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 8763
No 12
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=2.8e-21 Score=132.91 Aligned_cols=80 Identities=26% Similarity=0.447 Sum_probs=75.8
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 88 ~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
....+.++|||+|||.++++++|+++|+.||.|..|.|++++.+|.++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456889999999999999999999999999999999999889999999999999999999999999999999999986
No 13
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=142.09 Aligned_cols=78 Identities=19% Similarity=0.333 Sum_probs=73.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAG--NVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G--~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...++|||+|||+++++++|+++|+.|| .|..|+|+.|+.+|+++|||||+|.+.++|++|++.|||..|+|+.|+++
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999999999999999999999999999999999999999999873
No 14
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.86 E-value=1.6e-21 Score=130.11 Aligned_cols=76 Identities=25% Similarity=0.515 Sum_probs=73.2
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
.++|||+|||.++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 5799999999999999999999999999999999999899999999999999999999999999999999999863
No 15
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.86 E-value=2.1e-21 Score=127.11 Aligned_cols=79 Identities=29% Similarity=0.393 Sum_probs=73.9
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...+.++|||+|||.++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++ +++..++|+.|+++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999997 68899999999874
No 16
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.8e-21 Score=131.38 Aligned_cols=79 Identities=24% Similarity=0.387 Sum_probs=75.5
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...+.++|||+|||.++++++|+++|++||.|..|.+++++.+|+++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 4456789999999999999999999999999999999999989999999999999999999999999999999999986
No 17
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.1e-21 Score=129.05 Aligned_cols=77 Identities=34% Similarity=0.590 Sum_probs=74.1
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...++|||+|||.++++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 79 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 79 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 45789999999999999999999999999999999999989999999999999999999999999999999999986
No 18
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=2.8e-21 Score=132.96 Aligned_cols=79 Identities=30% Similarity=0.388 Sum_probs=74.9
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...+.++|||+|||.++++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3345689999999999999999999999999999999999989999999999999999999999999999999999986
No 19
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.8e-21 Score=130.35 Aligned_cols=78 Identities=27% Similarity=0.351 Sum_probs=74.6
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
..+.++|||+|||.++++++|+++|+.||.|..|.+++++.+|+++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 82 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 456789999999999999999999999999999999999989999999999999999999999999999999999986
No 20
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=129.69 Aligned_cols=79 Identities=30% Similarity=0.436 Sum_probs=74.5
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...+.++|||+|||.++++++|+++|++||.|..|.+++++.+++++|||||+|.+.++|++|++ |||..++|+.|+++
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999 99999999999863
No 21
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=2.9e-22 Score=132.87 Aligned_cols=74 Identities=19% Similarity=0.313 Sum_probs=69.9
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh-CCceeCCcccee
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAG-NVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF-NGYVSNKLSPKK 167 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G-~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l-~g~~~~gr~i~~ 167 (168)
.+|||+|||.+++|++|+++|++|| .|.+|+|++|+.+|+++|||||+|.+.++|++|++.+ ++..++|+.|++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEE
Confidence 5899999999999999999999999 7999999999999999999999999999999999987 466899999986
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=2.3e-21 Score=133.78 Aligned_cols=73 Identities=30% Similarity=0.477 Sum_probs=69.3
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
..+|||+|||+++++++|+++|++||.|..|+|++|+ +.++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V 77 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 77 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 5689999999999999999999999999999999995 558999999999999999999999999999999976
No 23
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.2e-21 Score=131.23 Aligned_cols=80 Identities=28% Similarity=0.352 Sum_probs=75.7
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
.....++|||+|||.++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44567899999999999999999999999999999999999899999999999999999999999999999999999863
No 24
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=128.30 Aligned_cols=79 Identities=24% Similarity=0.352 Sum_probs=75.2
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...+.++|||+|||.++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 4456789999999999999999999999999999999999989999999999999999999999999999999999986
No 25
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.8e-22 Score=128.91 Aligned_cols=77 Identities=22% Similarity=0.349 Sum_probs=73.9
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.+.++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 79 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQ 79 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEee
Confidence 45789999999999999999999999999999999999989999999999999999999999999999999999876
No 26
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=131.78 Aligned_cols=80 Identities=23% Similarity=0.326 Sum_probs=75.7
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...+.++|||+|||.++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999999899999999999999999999999999999999999863
No 27
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.6e-21 Score=130.28 Aligned_cols=79 Identities=34% Similarity=0.543 Sum_probs=75.3
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...+.++|||+|||.++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4456789999999999999999999999999999999999989999999999999999999999999999999999986
No 28
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.86 E-value=7.1e-22 Score=132.23 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=71.2
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCC--eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCc----eeCCccc
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGN--VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY----VSNKLSP 165 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~--i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~----~~~gr~i 165 (168)
.-.+|||+|||+++++++|+++|++||. +.+|++++|+.+|+++|||||+|.+.++|++|++.|||. .++||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3568999999999999999999999995 679999999999999999999999999999999999997 5999999
Q ss_pred ee
Q 030975 166 KK 167 (168)
Q Consensus 166 ~~ 167 (168)
++
T Consensus 88 ~V 89 (95)
T 2lkz_A 88 GV 89 (95)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 29
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.85 E-value=2.2e-21 Score=134.00 Aligned_cols=80 Identities=29% Similarity=0.408 Sum_probs=75.3
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...+.++|||+|||.++++++|+++|++||.|..|++++++.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999998899999999999999999999999999999999999863
No 30
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=3.2e-21 Score=128.91 Aligned_cols=78 Identities=28% Similarity=0.413 Sum_probs=73.3
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCC---CCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKV---TGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~---tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.+.++|||+|||.++++++|+++|++||.|..|.++.++. ++.++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999999876 6699999999999999999999999999999999986
Q ss_pred C
Q 030975 168 K 168 (168)
Q Consensus 168 k 168 (168)
+
T Consensus 83 ~ 83 (98)
T 2cpf_A 83 R 83 (98)
T ss_dssp E
T ss_pred E
Confidence 3
No 31
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=5.4e-21 Score=128.01 Aligned_cols=76 Identities=22% Similarity=0.378 Sum_probs=72.6
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCee-EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcc
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE-MVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLS 164 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~-~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~ 164 (168)
.....++|||+|||.++++++|+++|++||.|. .+++++++.+|+++|||||+|.+.++|++|++.|||..++|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 345678999999999999999999999999999 9999999999999999999999999999999999999999999
No 32
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.85 E-value=3.3e-21 Score=131.50 Aligned_cols=79 Identities=19% Similarity=0.260 Sum_probs=75.0
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...+.++|||+|||.++++++|+++|+.||.|..|.++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3456789999999999999999999999999999999999989999999999999999999999999999999999986
No 33
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.9e-21 Score=130.90 Aligned_cols=79 Identities=25% Similarity=0.327 Sum_probs=75.1
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...+.++|||+|||.++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456789999999999999999999999999999999999889999999999999999999999999999999999986
No 34
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=6.1e-21 Score=128.07 Aligned_cols=77 Identities=21% Similarity=0.425 Sum_probs=73.5
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
..+.++|||+|||.++++++|+++|++||.|..|.++.++ +|+++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3457899999999999999999999999999999999998 9999999999999999999999999999999999986
No 35
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=5e-21 Score=130.64 Aligned_cols=80 Identities=19% Similarity=0.336 Sum_probs=75.6
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC------CceeCC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN------GYVSNK 162 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~------g~~~~g 162 (168)
...+.++|||+|||+++++++|+++|+.||.|..|.|++++.+|.++|||||+|.+.++|++|++.|| |..++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ccceeC
Q 030975 163 LSPKKK 168 (168)
Q Consensus 163 r~i~~k 168 (168)
+.|+++
T Consensus 91 ~~l~v~ 96 (111)
T 1x4h_A 91 RQLKVD 96 (111)
T ss_dssp CEEEEE
T ss_pred EEEEEE
Confidence 999863
No 36
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.85 E-value=5.4e-21 Score=130.58 Aligned_cols=79 Identities=34% Similarity=0.630 Sum_probs=75.2
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.....++|||+|||.++++++|+++|++||.|..|.+++++.+|+++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4456789999999999999999999999999999999999989999999999999999999999999999999999986
No 37
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.5e-21 Score=128.87 Aligned_cols=77 Identities=26% Similarity=0.412 Sum_probs=73.9
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEE-EEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV-EVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v-~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.+.++|||+|||.++++++|+++|++||.|..+ .+++++.+|.++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 80 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITV 80 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 457899999999999999999999999999999 99999889999999999999999999999999999999999986
No 38
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.8e-21 Score=131.10 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=71.8
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...++|||+|||+++++++|+++|+.||.|..|.|++|+. |+++|||||+|.+.++|++|++ ++|..++|+.|+++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 3467999999999999999999999999999999999986 9999999999999999999999 99999999999874
No 39
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.85 E-value=1.4e-20 Score=131.20 Aligned_cols=79 Identities=28% Similarity=0.395 Sum_probs=75.1
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 88 ~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
......++|||+|||.++++++|+++|++||.|..|.++.++ +|+++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 455678899999999999999999999999999999999998 9999999999999999999999999999999999986
No 40
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.85 E-value=4.7e-21 Score=134.95 Aligned_cols=80 Identities=28% Similarity=0.419 Sum_probs=75.9
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...+.++|||+|||.++++++|+++|++||.|..|.+++++.+|+++|||||+|.+.++|++|++.|||..|+|+.|+++
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999874
No 41
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=3.7e-21 Score=130.35 Aligned_cols=80 Identities=26% Similarity=0.407 Sum_probs=75.0
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee---CCccc
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS---NKLSP 165 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~---~gr~i 165 (168)
...+.++|||+|||.++++++|+++|++||.|..|.++.++.+|+++|||||+|.+.++|++|++.|||..+ +|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 445678999999999999999999999999999999999998999999999999999999999999999988 88998
Q ss_pred eeC
Q 030975 166 KKK 168 (168)
Q Consensus 166 ~~k 168 (168)
+++
T Consensus 89 ~v~ 91 (106)
T 2dgp_A 89 QVK 91 (106)
T ss_dssp EEE
T ss_pred EEE
Confidence 763
No 42
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.85 E-value=6.2e-21 Score=126.70 Aligned_cols=79 Identities=30% Similarity=0.390 Sum_probs=73.8
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
.....++|||+|||.++++++|+++|++||.|..|.++.++. |+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 334578999999999999999999999999999999999985 9999999999999999999999999999999999873
No 43
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=6.4e-21 Score=129.31 Aligned_cols=80 Identities=24% Similarity=0.372 Sum_probs=75.2
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeec-CCCCCcceEEEEEecCHHHHHHHHHHh-CCceeCCccce
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYD-KVTGRSRGFGFVTMSSVEEVEAAAQQF-NGYVSNKLSPK 166 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~-~~tg~~~g~~FV~f~~~~~a~~Al~~l-~g~~~~gr~i~ 166 (168)
.....++|||+|||.++++++|+++|++||.|..|.++.+ +.++.++|||||+|.+.++|++|++.| ||..++|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4456789999999999999999999999999999999999 789999999999999999999999999 99999999998
Q ss_pred eC
Q 030975 167 KK 168 (168)
Q Consensus 167 ~k 168 (168)
++
T Consensus 91 v~ 92 (107)
T 2cph_A 91 LE 92 (107)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 44
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=9.3e-21 Score=127.91 Aligned_cols=78 Identities=24% Similarity=0.500 Sum_probs=73.2
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...+.++|||+|||.++++++|+++|++|| |..|.+++++.+|+++|||||+|.+.++|++|+ .|||..++|+.|+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 445678999999999999999999999997 999999999999999999999999999999999 799999999999863
No 45
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=127.62 Aligned_cols=78 Identities=29% Similarity=0.435 Sum_probs=73.9
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhc-cCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce-eCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFET-AGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV-SNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~-~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~-~~gr~i~~ 167 (168)
..+.++|||+|||.++++++|+++|+. ||.|..|.+++++ +|+++|||||+|.+.++|++|++.|||.. ++|+.|++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999999 99999999999999999999999999999 99999876
Q ss_pred C
Q 030975 168 K 168 (168)
Q Consensus 168 k 168 (168)
+
T Consensus 85 ~ 85 (104)
T 2dhg_A 85 S 85 (104)
T ss_dssp C
T ss_pred E
Confidence 3
No 46
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.6e-21 Score=130.98 Aligned_cols=80 Identities=28% Similarity=0.342 Sum_probs=75.2
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCee--------EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--------MVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS 160 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~--------~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~ 160 (168)
...+.++|||+|||.++++++|+++|++||.|. .|+++.++.+|+++|||||+|.+.++|++|++.|||..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 445678999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCccceeC
Q 030975 161 NKLSPKKK 168 (168)
Q Consensus 161 ~gr~i~~k 168 (168)
+|+.|+++
T Consensus 91 ~g~~l~V~ 98 (113)
T 2cpe_A 91 QGSKLKVS 98 (113)
T ss_dssp TTEECEEE
T ss_pred CCCEEEEE
Confidence 99999863
No 47
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=1.3e-20 Score=127.40 Aligned_cols=77 Identities=30% Similarity=0.360 Sum_probs=72.9
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC---ccce
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK---LSPK 166 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~g---r~i~ 166 (168)
....++|||+|||.++++++|+++|++||.|..|.|+.++ +|+++|||||+|.+.++|++|++.|||..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999998 89999999999999999999999999999998 8887
Q ss_pred e
Q 030975 167 K 167 (168)
Q Consensus 167 ~ 167 (168)
+
T Consensus 91 V 91 (105)
T 2dnh_A 91 V 91 (105)
T ss_dssp E
T ss_pred E
Confidence 6
No 48
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=9.8e-21 Score=134.25 Aligned_cols=79 Identities=33% Similarity=0.468 Sum_probs=75.3
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.....++|||+|||.++++++|+++|+.||.|..|++++++.+|+++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4456789999999999999999999999999999999999999999999999999999999999999999999999986
No 49
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.84 E-value=4.9e-21 Score=133.67 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=75.9
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 88 ~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
....+.++|||+|||.++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++.|||..|+|+.|++
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999986
Q ss_pred C
Q 030975 168 K 168 (168)
Q Consensus 168 k 168 (168)
+
T Consensus 97 ~ 97 (126)
T 3ex7_B 97 D 97 (126)
T ss_dssp E
T ss_pred E
Confidence 3
No 50
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.1e-21 Score=128.38 Aligned_cols=80 Identities=19% Similarity=0.157 Sum_probs=74.6
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
.....++|||+|||.++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 33456899999999999999999999999999999999998899999999999999999999999999999999999863
No 51
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=7.4e-21 Score=124.44 Aligned_cols=76 Identities=20% Similarity=0.419 Sum_probs=72.1
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCC-cceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGR-SRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~-~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
..++|||+|||.++++++|+++|++||.|..+.++.++.++. ++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 79 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITA 79 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEE
Confidence 467999999999999999999999999999999999987766 9999999999999999999999999999999986
No 52
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.84 E-value=1.9e-21 Score=123.94 Aligned_cols=73 Identities=34% Similarity=0.508 Sum_probs=70.3
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 95 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
+|||+|||.++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++ |||..++|+.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 73 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECK 73 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEE
Confidence 58999999999999999999999999999999999899999999999999999999998 99999999999874
No 53
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.84 E-value=3e-21 Score=128.23 Aligned_cols=77 Identities=19% Similarity=0.184 Sum_probs=72.6
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v 89 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999986
No 54
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.84 E-value=9.9e-21 Score=124.20 Aligned_cols=74 Identities=23% Similarity=0.479 Sum_probs=71.6
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.++|||+|||.++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|++|+ .|||..++|+.|++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V 79 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKV 79 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEE
Confidence 579999999999999999999999999999999999989999999999999999999999 89999999999986
No 55
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=127.35 Aligned_cols=77 Identities=31% Similarity=0.470 Sum_probs=73.1
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...+.++|||+|||.++++++|+++|++||.|..|.++.+ +|.++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4456889999999999999999999999999999999998 8999999999999999999999999999999999986
No 56
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=8e-21 Score=131.30 Aligned_cols=77 Identities=30% Similarity=0.448 Sum_probs=73.4
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
..+.++|||+|||.++++++|+++|++||.|..|.++.++ +|+++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V 80 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKV 80 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3457899999999999999999999999999999999998 9999999999999999999999999999999999986
No 57
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.3e-21 Score=130.85 Aligned_cols=77 Identities=27% Similarity=0.531 Sum_probs=73.5
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
..++|||+|||.++++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 45789999999999999999999999999999999999899999999999999999999999999999999999863
No 58
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=127.88 Aligned_cols=79 Identities=29% Similarity=0.361 Sum_probs=74.7
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...+.++|||+|||+++++++|+++|++||.|..|.+++++.+++++|||||+|.+.++|++|++. +|..++|+.|+++
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 445678999999999999999999999999999999999998999999999999999999999998 9999999999874
No 59
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.84 E-value=5.6e-21 Score=123.68 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=68.1
Q ss_pred CCEEEEeCCCCCC------cHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc-cc
Q 030975 93 DLKLFVGNLPFSV------DSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKL-SP 165 (168)
Q Consensus 93 ~~~lfV~nLp~~~------~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr-~i 165 (168)
.++|||+|||.++ ++++|+++|++||.|..+.++ +.+|+++|||||+|.+.++|++|++.|||..++|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999988 35899999999999999999999999999999999 88
Q ss_pred ee
Q 030975 166 KK 167 (168)
Q Consensus 166 ~~ 167 (168)
++
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 60
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=129.80 Aligned_cols=78 Identities=36% Similarity=0.548 Sum_probs=74.0
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.....++|||+|||.++++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++|++.+++ .++|+.|++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 445678999999999999999999999999999999999998999999999999999999999999998 899999986
No 61
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-21 Score=137.28 Aligned_cols=79 Identities=20% Similarity=0.267 Sum_probs=73.7
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeE--EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCc----eeCC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--VEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY----VSNK 162 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~--v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~----~~~g 162 (168)
.....++|||+|||+++++++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|++|++.|||. .++|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3355789999999999999999999999999976 99999999999999999999999 999999999999 9999
Q ss_pred ccceeC
Q 030975 163 LSPKKK 168 (168)
Q Consensus 163 r~i~~k 168 (168)
+.|+++
T Consensus 98 r~l~V~ 103 (131)
T 2m2b_A 98 KTINVE 103 (131)
T ss_dssp CCCCCE
T ss_pred EEEEEE
Confidence 999763
No 62
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3e-20 Score=127.43 Aligned_cols=79 Identities=32% Similarity=0.396 Sum_probs=74.1
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
.....++|||+|||.++++++|+++|++||.|..|.|+.++ +|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567899999999999999999999999999999999998 69999999999999999999999999999999999863
No 63
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.84 E-value=2.1e-20 Score=123.41 Aligned_cols=76 Identities=29% Similarity=0.420 Sum_probs=71.8
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
..+.++|||+|||.++++++|+++|++||.|..+.++++ +|+++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 456789999999999999999999999999999999985 7999999999999999999999999999999999876
No 64
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=125.56 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=71.3
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHH----HHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcc
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLA----GLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLS 164 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~----~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~ 164 (168)
...+.++|||+|||+++++++|+ ++|++||.|..|.++.++.+ +|||||+|.+.++|++|++.|||..++|+.
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34567899999999999999999 99999999999999999755 899999999999999999999999999999
Q ss_pred ceeC
Q 030975 165 PKKK 168 (168)
Q Consensus 165 i~~k 168 (168)
|+++
T Consensus 82 l~V~ 85 (96)
T 2dgx_A 82 ILVS 85 (96)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9863
No 65
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.4e-20 Score=124.51 Aligned_cols=79 Identities=28% Similarity=0.503 Sum_probs=72.6
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 88 ~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
......++|||+|||.++++++|+++|++||.|..|.|+.++. .++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456679999999999999999999999999999999999863 48999999999999999999999999999999986
Q ss_pred C
Q 030975 168 K 168 (168)
Q Consensus 168 k 168 (168)
+
T Consensus 88 ~ 88 (103)
T 2cq3_A 88 N 88 (103)
T ss_dssp E
T ss_pred E
Confidence 3
No 66
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-20 Score=127.20 Aligned_cols=77 Identities=21% Similarity=0.411 Sum_probs=72.4
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVT-GRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~t-g~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
..+.++|||+|||.++++++|+++|+.|| |..|.|++++.+ |+++|||||+|.+.++|++|+ .|||..++|+.|+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34568999999999999999999999999 999999999887 999999999999999999999 899999999999863
No 67
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=3.2e-20 Score=134.16 Aligned_cols=79 Identities=27% Similarity=0.395 Sum_probs=75.5
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...+.++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.|||..|+|+.|++
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4456789999999999999999999999999999999999999999999999999999999999999999999999987
No 68
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.8e-21 Score=131.59 Aligned_cols=76 Identities=21% Similarity=0.339 Sum_probs=72.7
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
..++|||+|||.++++++|+++|+.||.|..|.|+.++.+|+++|||||+|.+.++|++|+ .|||..|+|+.|+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 4589999999999999999999999999999999999989999999999999999999999 899999999999873
No 69
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=132.17 Aligned_cols=80 Identities=25% Similarity=0.339 Sum_probs=75.7
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...+.++|||+|||.++++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999873
No 70
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.2e-20 Score=124.12 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=71.8
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
.....++|||+|||.++++++|+++|++||.|..|.+++++. .++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 445678999999999999999999999999999999999863 368999999999999999999999999999999863
No 71
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.4e-21 Score=122.63 Aligned_cols=74 Identities=31% Similarity=0.442 Sum_probs=70.8
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
++|||+|||.++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.++ ..++|+.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~ 74 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPK 74 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEE
Confidence 479999999999999999999999999999999999899999999999999999999999999 99999999874
No 72
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=1.5e-20 Score=128.48 Aligned_cols=79 Identities=30% Similarity=0.389 Sum_probs=70.4
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...+.++|||+|||.++++++|+++|+.||.|..|.+++++.+|+++|||||+|.+.++|++|++.+ |..++|+.|+++
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3455789999999999999999999999999999999999989999999999999999999999965 699999998763
No 73
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.83 E-value=3.5e-21 Score=126.77 Aligned_cols=74 Identities=32% Similarity=0.503 Sum_probs=71.1
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
++|||+|||.++++++|+++|++||.|..+.+++++.+|+++|||||+|.+.+ |++|++.|||..++|+.|+++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVT 75 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEE
Confidence 58999999999999999999999999999999999989999999999999999 999999999999999999863
No 74
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.7e-20 Score=121.25 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=71.7
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.....++|||+|||+++++++|+++|+.| .|..|.++++ .+|+++|||||+|.+.++|++|++ |||..++|+.|++
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 34567899999999999999999999999 9999999999 689999999999999999999999 9999999999986
No 75
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.3e-20 Score=122.86 Aligned_cols=78 Identities=29% Similarity=0.358 Sum_probs=72.3
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...+.++|||+|||.++++++|+++|+.||.|..|.++.++.+|+++|||||+|.+.++|++|++ ++..++|+.|+++
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34557899999999999999999999999999999999999899999999999999999999998 5789999998763
No 76
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.6e-20 Score=125.47 Aligned_cols=77 Identities=22% Similarity=0.237 Sum_probs=71.5
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~-v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.....++|||+|||+++++++|+++|+.||.|.. |.|+++ .+|+++|||||+|.+.++|++|++. +|..++||.|++
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999999999999999999999987 889888 6999999999999999999999996 999999999876
No 77
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=126.13 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=70.2
Q ss_pred CCCCCEEEEeCCCCCC------cHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc
Q 030975 90 FSPDLKLFVGNLPFSV------DSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKL 163 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~------~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr 163 (168)
....++|||+|||+.+ ++++|+++|++||.|..|.++ +.+|+++|||||+|.+.++|++|++.|||..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3456899999999999 789999999999999999988 35899999999999999999999999999999999
Q ss_pred -ccee
Q 030975 164 -SPKK 167 (168)
Q Consensus 164 -~i~~ 167 (168)
.|++
T Consensus 90 ~~l~V 94 (105)
T 2nlw_A 90 HTFRV 94 (105)
T ss_dssp CEEEE
T ss_pred ceEEE
Confidence 8876
No 78
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-20 Score=129.03 Aligned_cols=77 Identities=17% Similarity=0.225 Sum_probs=72.4
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCe-eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNV-EMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i-~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...+.++|||+|||+++++++|+++|+.||.| ..|.|++|+ +|+++|||||+|.+.++|++|++. ||..|+|+.|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999999999 899999998 999999999999999999999996 999999999986
No 79
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=3.7e-20 Score=133.83 Aligned_cols=80 Identities=28% Similarity=0.377 Sum_probs=75.4
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
.....++|||+|||.++++++|+++|+.||.|..|.++.|+.+|+++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 33557899999999999999999999999999999999998899999999999999999999999999999999999863
No 80
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.82 E-value=4e-20 Score=128.66 Aligned_cols=74 Identities=20% Similarity=0.490 Sum_probs=71.5
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.++|||+|||.++++++|+++|++||.|..|.+++++.+|+++|||||+|.+.++|++|+ .|||..++|+.|++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 109 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKV 109 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEE
Confidence 579999999999999999999999999999999999889999999999999999999999 69999999999986
No 81
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.9e-20 Score=126.38 Aligned_cols=78 Identities=29% Similarity=0.523 Sum_probs=72.2
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
.....++|||+|||.++++++|+++|++||.|..|.+++++ +.++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999985 4589999999999999999999999999999999863
No 82
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.82 E-value=3.2e-20 Score=128.62 Aligned_cols=76 Identities=20% Similarity=0.244 Sum_probs=71.8
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCC---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccce
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGN---VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 166 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~---i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~ 166 (168)
....++|||+|||+++++++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|++|++ +||..|+||.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999999999999999999999 89999999986 9999999999999999999999 999999999998
Q ss_pred e
Q 030975 167 K 167 (168)
Q Consensus 167 ~ 167 (168)
+
T Consensus 92 V 92 (118)
T 2db1_A 92 V 92 (118)
T ss_dssp E
T ss_pred E
Confidence 6
No 83
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.82 E-value=1.8e-20 Score=133.14 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=73.1
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCC---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccc
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGN---VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 165 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~---i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i 165 (168)
...+.++|||+|||+++++++|+++|+.||. |..|+|++|+. |+++|||||+|.+.++|++|++ |||..++||.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 89999999986 9999999999999999999999 99999999999
Q ss_pred eeC
Q 030975 166 KKK 168 (168)
Q Consensus 166 ~~k 168 (168)
+++
T Consensus 118 ~V~ 120 (136)
T 2hgl_A 118 EVF 120 (136)
T ss_dssp EEE
T ss_pred EEE
Confidence 873
No 84
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.82 E-value=9.8e-21 Score=127.35 Aligned_cols=77 Identities=21% Similarity=0.398 Sum_probs=69.7
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecC-CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDK-VTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~-~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.....++|||+|||.++++++|+++|+.|| |..|.+++++ .+|+++|||||+|.+.++|++|+ .|||..++|+.|++
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345578999999999999999999999999 9999999998 69999999999999999999999 79999999999876
No 85
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.3e-20 Score=127.06 Aligned_cols=79 Identities=18% Similarity=0.162 Sum_probs=72.1
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHH---HHhhccCCeeEEEEeecCCCC---CcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLA---GLFETAGNVEMVEVIYDKVTG---RSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 162 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~---~~F~~~G~i~~v~l~~~~~tg---~~~g~~FV~f~~~~~a~~Al~~l~g~~~~g 162 (168)
.....++|||+|||+++++++|+ ++|++||.|..|.++.++.++ +++|||||+|.+.++|++|++.|||..++|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 33457799999999999999999 999999999999999987654 566999999999999999999999999999
Q ss_pred cccee
Q 030975 163 LSPKK 167 (168)
Q Consensus 163 r~i~~ 167 (168)
+.|++
T Consensus 91 r~l~V 95 (111)
T 2cpi_A 91 RTLKA 95 (111)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
No 86
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=2.9e-20 Score=121.86 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=66.3
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
..-||||||++.++|++|+++|.+||+|.++++.. ++|||||+|.+.++|++|++.|||..++||.|+++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~ 76 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAE 76 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 56899999999999999999999999999999864 68999999999999999999999999999999874
No 87
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.82 E-value=2.4e-20 Score=143.17 Aligned_cols=77 Identities=17% Similarity=0.337 Sum_probs=72.9
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAG--NVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G--~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
..++|||+||++++++++|+++|++|| .|..|+|++|+.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 567999999999999999999999999 99999999999999999999999999999999999999999999999874
No 88
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=124.65 Aligned_cols=74 Identities=32% Similarity=0.556 Sum_probs=69.0
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcc
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLS 164 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~ 164 (168)
..+.++|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|++|++.|||..++|+.
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 95 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 95 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCc
Confidence 3457899999999999999999999999999999999998 9999999999999999999999999999995443
No 89
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.5e-20 Score=124.03 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=66.6
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC--CceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN--GYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~--g~~~~gr~i~~ 167 (168)
..+.++|||+|||+++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|++|++.|+ +..++|+.|++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999999865 6999999999999999999886 47999999986
Q ss_pred C
Q 030975 168 K 168 (168)
Q Consensus 168 k 168 (168)
.
T Consensus 87 ~ 87 (105)
T 1sjq_A 87 Q 87 (105)
T ss_dssp C
T ss_pred E
Confidence 3
No 90
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-20 Score=130.43 Aligned_cols=77 Identities=18% Similarity=0.238 Sum_probs=71.6
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
....++|||+|||+++++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|++|++ |||..|+|+.|++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 4456899999999999999999999999999987777777799999999999999999999999 9999999999986
No 91
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.5e-20 Score=125.56 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=72.1
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCC-eeEEEEe-ecCCCCCcceEEEEEecCHHHHHHHHHHhC--CceeCCccce
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGN-VEMVEVI-YDKVTGRSRGFGFVTMSSVEEVEAAAQQFN--GYVSNKLSPK 166 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~-i~~v~l~-~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~--g~~~~gr~i~ 166 (168)
.+.++|||+|||.++++++|+++|+.||. |..+.++ .++.+|+++|||||+|.+.++|++|++.|+ +..++|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35789999999999999999999999998 9999998 788899999999999999999999999996 5999999998
Q ss_pred e
Q 030975 167 K 167 (168)
Q Consensus 167 ~ 167 (168)
+
T Consensus 86 V 86 (109)
T 2dis_A 86 V 86 (109)
T ss_dssp E
T ss_pred E
Confidence 6
No 92
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4e-20 Score=125.09 Aligned_cols=76 Identities=14% Similarity=0.143 Sum_probs=70.4
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.....++|||+|||+++++++|+++|+.||. ..|+|++|+ +|+++|||||+|.+.++|++|++ +|+..++||.|++
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVEL 86 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 3455789999999999999999999999995 599999998 89999999999999999999996 8999999999976
No 93
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.9e-20 Score=126.87 Aligned_cols=76 Identities=36% Similarity=0.486 Sum_probs=72.3
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
+.++|||+|||.++++++|+++|+.||.|..|.|+.++.+|+++|||||+|.+.++|++|++. +|..++|+.|+++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 358999999999999999999999999999999999998999999999999999999999997 9999999999863
No 94
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=1.7e-19 Score=131.62 Aligned_cols=79 Identities=19% Similarity=0.260 Sum_probs=74.5
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.....++|||+|||.++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++.|||..|+|+.|++
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456789999999999999999999999999999999999989999999999999999999999999999999999986
No 95
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.81 E-value=1e-20 Score=120.38 Aligned_cols=73 Identities=27% Similarity=0.356 Sum_probs=69.8
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 95 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
+|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++ ++|..++|+.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~ 73 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIK 73 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEE
Confidence 58999999999999999999999999999999999899999999999999999999999 59999999999874
No 96
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.81 E-value=2.2e-20 Score=127.17 Aligned_cols=77 Identities=14% Similarity=0.229 Sum_probs=72.3
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCC---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccc
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGN---VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 165 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~---i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i 165 (168)
.....++|||+|||+++++++|+++|+.||. |..|.|++++. |+++|||||+|.+.++|++|++ +||..++||.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 4456889999999999999999999999998 89999999986 9999999999999999999999 99999999998
Q ss_pred ee
Q 030975 166 KK 167 (168)
Q Consensus 166 ~~ 167 (168)
++
T Consensus 85 ~V 86 (107)
T 2lmi_A 85 EV 86 (107)
T ss_dssp CC
T ss_pred EE
Confidence 76
No 97
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.81 E-value=1.7e-19 Score=133.41 Aligned_cols=79 Identities=28% Similarity=0.395 Sum_probs=74.9
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 88 ~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
......++|||+|||.++++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 83 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V 161 (177)
T 2f3j_A 83 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 161 (177)
T ss_dssp SSCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345667899999999999999999999999999999999998 9999999999999999999999999999999999986
No 98
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.9e-19 Score=121.72 Aligned_cols=76 Identities=20% Similarity=0.358 Sum_probs=69.8
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...+.++|||+|||.++++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3455789999999999999999999999999999999654 568999999999999999999999999999999986
No 99
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=6.5e-20 Score=125.98 Aligned_cols=75 Identities=16% Similarity=0.107 Sum_probs=68.3
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAG-NVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G-~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
....++|||+|||+++++++|+++|++|| .|..+.+.. +.++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34578999999999999999999999999 899998863 3579999999999999999999999999999999873
No 100
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.80 E-value=2.2e-19 Score=135.82 Aligned_cols=77 Identities=29% Similarity=0.358 Sum_probs=72.8
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.+.++|||||||+++++++|+++|++||.|.+|+|++|+.+|+++|||||+|.+.++|++|++.+||..+.|+.|++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~ 89 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 89 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccc
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999875
No 101
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.80 E-value=6.3e-20 Score=128.08 Aligned_cols=75 Identities=11% Similarity=0.144 Sum_probs=68.7
Q ss_pred CEEEEeCC----CCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecC----HHH----HHHHHH--HhCCce
Q 030975 94 LKLFVGNL----PFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSS----VEE----VEAAAQ--QFNGYV 159 (168)
Q Consensus 94 ~~lfV~nL----p~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~----~~~----a~~Al~--~l~g~~ 159 (168)
.+|||||| ++.+++++|+++|+.||+|.++.++.|+.||+++|||||+|.+ .++ |.+|++ .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 788988 789999
Q ss_pred eCCccceeC
Q 030975 160 SNKLSPKKK 168 (168)
Q Consensus 160 ~~gr~i~~k 168 (168)
|+|+.|+|+
T Consensus 83 I~Gr~irV~ 91 (136)
T 2j8a_A 83 IMGFKFEVI 91 (136)
T ss_dssp ETTEEEEEE
T ss_pred ecCcEEEEE
Confidence 999999874
No 102
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=2.7e-20 Score=131.92 Aligned_cols=79 Identities=28% Similarity=0.372 Sum_probs=74.7
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
..+.++|||+|||.++++++|+++|+.||.|..|.++.++.+++++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3457899999999999999999999999999999999998899999999999999999999999999999999999873
No 103
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=7.6e-20 Score=125.25 Aligned_cols=73 Identities=26% Similarity=0.354 Sum_probs=68.7
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
+..+|||+|||+++++++|+++|+.| .|..|.|++|+. |+++|||||+|.+.++|++|+ .+||..++||.|++
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V 87 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEV 87 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEE
Confidence 35799999999999999999999999 899999999985 999999999999999999999 59999999999876
No 104
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=120.62 Aligned_cols=75 Identities=23% Similarity=0.342 Sum_probs=68.7
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...+.++|||+|||.++++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 44568999999999999999999999999977 56666 58999999999999999999999999999999999986
No 105
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.4e-19 Score=120.82 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=67.0
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC-----c
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK-----L 163 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~g-----r 163 (168)
.....++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|++|++.|||..++| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456789999999999999999999999999999999876 899999999999999999999999999 8
Q ss_pred ccee
Q 030975 164 SPKK 167 (168)
Q Consensus 164 ~i~~ 167 (168)
.|++
T Consensus 84 ~i~V 87 (108)
T 1x4c_A 84 YIRV 87 (108)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 106
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=124.89 Aligned_cols=75 Identities=17% Similarity=0.276 Sum_probs=67.9
Q ss_pred CCCCCEEEEeCCCCCCcHHHHH----HHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccc
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLA----GLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 165 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~----~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i 165 (168)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|++|++.|||..++|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999998866 6999999999987753 68899999999999999999999999999999999
Q ss_pred ee
Q 030975 166 KK 167 (168)
Q Consensus 166 ~~ 167 (168)
++
T Consensus 103 ~V 104 (127)
T 2a3j_A 103 VI 104 (127)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 107
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-20 Score=125.95 Aligned_cols=76 Identities=26% Similarity=0.305 Sum_probs=70.4
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
....++|||+|||.++++++|+++|+.||.|.. .++.+..+|+++|||||+|.+.++|++|++ |||..++|+.|++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V 89 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 89 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEE
Confidence 345789999999999999999999999999888 677777789999999999999999999999 9999999999986
No 108
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.9e-20 Score=126.51 Aligned_cols=78 Identities=26% Similarity=0.285 Sum_probs=68.4
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
..+.++|||+|||.++++++|+++|+.||.|..+.+..+..+|+++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 346789999999999999999999999999854433333338999999999999999999999999999999999986
No 109
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5e-19 Score=118.97 Aligned_cols=76 Identities=26% Similarity=0.371 Sum_probs=70.1
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...+.++|||+|||.++++++|+++|+.|+ .+.++.++.+++++|||||+|.+.++|++|++.|||..|+|+.|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 445678999999999999999999999774 6888889889999999999999999999999999999999999986
No 110
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=6.3e-19 Score=118.37 Aligned_cols=72 Identities=15% Similarity=0.258 Sum_probs=67.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...++|||+|||.++++++|+++|++||.|..+++. +++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 346899999999999999999999999999999987 457999999999999999999999999999999874
No 111
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.4e-19 Score=116.00 Aligned_cols=70 Identities=29% Similarity=0.497 Sum_probs=66.1
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
..+.++|||+|||.++++++|+++|++||.|..+.++ +|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 74 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 74 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEE
Confidence 4567899999999999999999999999999999987 579999999999999999999999999999986
No 112
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.9e-19 Score=118.59 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=65.9
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh--CCceeCCccce
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF--NGYVSNKLSPK 166 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l--~g~~~~gr~i~ 166 (168)
...+.++|||+|||+++++++|+++|++||.|..|.++++ +|||||+|.+.++|++|++.| ++..++|+.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3346789999999999999999999999999999988854 799999999999999999976 57889999997
Q ss_pred e
Q 030975 167 K 167 (168)
Q Consensus 167 ~ 167 (168)
+
T Consensus 85 V 85 (101)
T 2cq1_A 85 I 85 (101)
T ss_dssp E
T ss_pred E
Confidence 6
No 113
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.79 E-value=1e-19 Score=122.51 Aligned_cols=73 Identities=26% Similarity=0.448 Sum_probs=69.0
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
..++|||+|||.++++++|+++|+.||.|..+.++.++ +|+++|||||+|.+.++|++|++ +|..++|+.|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v 80 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKL 80 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEE
Confidence 45799999999999999999999999999999999998 99999999999999999999998 888999988874
No 114
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.1e-19 Score=122.83 Aligned_cols=73 Identities=15% Similarity=0.194 Sum_probs=66.7
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCccce
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG--YVSNKLSPK 166 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g--~~~~gr~i~ 166 (168)
...+.++|||+|||+++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|++|++.|++ ..++|+.|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456789999999999999999999999999999999865 79999999999999999998874 689999998
Q ss_pred e
Q 030975 167 K 167 (168)
Q Consensus 167 ~ 167 (168)
+
T Consensus 101 V 101 (119)
T 2ad9_A 101 I 101 (119)
T ss_dssp E
T ss_pred E
Confidence 6
No 115
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-19 Score=126.26 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=69.4
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCe----eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccce
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNV----EMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 166 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i----~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~ 166 (168)
.+..+|||+|||+++++++|+++|+.||.| ..|.|++++ +|+++|||||+|.+.++|++|++. |+..++||.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 346899999999999999999999999875 689999995 899999999999999999999995 99999999987
Q ss_pred e
Q 030975 167 K 167 (168)
Q Consensus 167 ~ 167 (168)
+
T Consensus 99 V 99 (123)
T 2dha_A 99 L 99 (123)
T ss_dssp C
T ss_pred E
Confidence 6
No 116
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.9e-19 Score=113.91 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=67.5
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh-CCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF-NGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l-~g~~~~gr~i~~ 167 (168)
.....++|||+|||.++++++|+++|++||.|..+.++++ +|||||+|.+.++|++|++.| +|..++|+.|++
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3456789999999999999999999999999999999864 789999999999999999999 999999999986
No 117
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.3e-19 Score=118.84 Aligned_cols=74 Identities=27% Similarity=0.463 Sum_probs=68.4
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 88 ~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
....+.++|||+|||.++++++|+++|++||.|..|.++++ +|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 34566789999999999999999999999999999999854 689999999999999999999999999999986
No 118
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=7.4e-21 Score=131.11 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=74.2
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeE--------EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEM--------VEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 161 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~--------v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~ 161 (168)
..+.++|||+|||.++++++|+++|++||.|.. |.++.++.+|+++|||||+|.+.++|++|++.|||..++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345789999999999999999999999999998 999999889999999999999999999999999999999
Q ss_pred CccceeC
Q 030975 162 KLSPKKK 168 (168)
Q Consensus 162 gr~i~~k 168 (168)
|+.|+++
T Consensus 84 g~~l~V~ 90 (116)
T 2lcw_A 84 GNPIKVS 90 (116)
Confidence 9999863
No 119
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.78 E-value=2.9e-19 Score=125.33 Aligned_cols=77 Identities=18% Similarity=0.163 Sum_probs=69.9
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCee--EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccce
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVE--MVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 166 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~--~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~ 166 (168)
.....++|||+|||+++++++|+++|+.| .|. .|.|++|+. |+++|||||+|.+.++|++|++ +++..|+||.|+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34567899999999999999999999999 566 899999986 9999999999999999999998 588999999987
Q ss_pred eC
Q 030975 167 KK 168 (168)
Q Consensus 167 ~k 168 (168)
++
T Consensus 115 V~ 116 (126)
T 2hgm_A 115 VF 116 (126)
T ss_dssp CE
T ss_pred EE
Confidence 63
No 120
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.78 E-value=1.2e-18 Score=125.46 Aligned_cols=75 Identities=29% Similarity=0.512 Sum_probs=72.5
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.++|||+|||.++++++|+++|+.||.|..+.+++++.+|+++|||||+|.+.++|++|++.|+|..++|+.|++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 76 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 76 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEE
Confidence 579999999999999999999999999999999999989999999999999999999999999999999999876
No 121
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=6.6e-19 Score=118.59 Aligned_cols=73 Identities=14% Similarity=0.041 Sum_probs=66.4
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce--eCCccce
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV--SNKLSPK 166 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~--~~gr~i~ 166 (168)
...+.++|||+|||+++++++|+++|++||.|..+.+++ .||||||+|.+.++|++|++.|+|.. ++|++|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 445678999999999999999999999999999999984 36899999999999999999999875 8899987
Q ss_pred e
Q 030975 167 K 167 (168)
Q Consensus 167 ~ 167 (168)
+
T Consensus 91 V 91 (100)
T 3r27_A 91 V 91 (100)
T ss_dssp E
T ss_pred E
Confidence 5
No 122
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.5e-19 Score=120.51 Aligned_cols=72 Identities=14% Similarity=0.121 Sum_probs=65.6
Q ss_pred CCCCCEEEEeCCCC-CCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCccce
Q 030975 90 FSPDLKLFVGNLPF-SVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG--YVSNKLSPK 166 (168)
Q Consensus 90 ~~~~~~lfV~nLp~-~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g--~~~~gr~i~ 166 (168)
..+.++|||+|||+ ++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|++|++.||+ ..++|+.|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 9999999999999999999999865 47999999999999999999886 459999997
Q ss_pred e
Q 030975 167 K 167 (168)
Q Consensus 167 ~ 167 (168)
+
T Consensus 86 V 86 (102)
T 1x4d_A 86 V 86 (102)
T ss_dssp E
T ss_pred E
Confidence 6
No 123
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=6.4e-19 Score=117.65 Aligned_cols=73 Identities=16% Similarity=0.262 Sum_probs=66.6
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
....++|||+|||.++++++|+++|++||.|. +.++. ++++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34578999999999999999999999999997 66764 467899999999999999999999999999999986
No 124
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=1.1e-18 Score=119.81 Aligned_cols=74 Identities=16% Similarity=0.364 Sum_probs=69.1
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...++|||+|||.++++++|+++|+.||.|..|.++.+ +.++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 79 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVV 79 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 45789999999999999999999999999999999876 456999999999999999999999999999999876
No 125
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.9e-19 Score=119.32 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=67.5
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...++|||+|||.++++++|+++|+.||.|..|.++.+ +|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45789999999999999999999999999999999865 7899999999999999999999999999999863
No 126
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.4e-19 Score=119.07 Aligned_cols=73 Identities=15% Similarity=0.063 Sum_probs=65.5
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCc--eeCCccce
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY--VSNKLSPK 166 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~--~~~gr~i~ 166 (168)
...+.++|||+|||+++++++|+++|++||.|..|.++++ +|||||+|.+.++|++|++.|++. .++|+.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456789999999999999999999999999999998753 789999999999999999988754 59999987
Q ss_pred e
Q 030975 167 K 167 (168)
Q Consensus 167 ~ 167 (168)
+
T Consensus 85 V 85 (104)
T 1wex_A 85 F 85 (104)
T ss_dssp E
T ss_pred E
Confidence 6
No 127
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.4e-18 Score=123.85 Aligned_cols=79 Identities=29% Similarity=0.460 Sum_probs=75.2
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
......+|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|++
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 4456789999999999999999999999999999999999889999999999999999999999999999999999986
No 128
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.78 E-value=3e-19 Score=118.96 Aligned_cols=75 Identities=19% Similarity=0.322 Sum_probs=69.1
Q ss_pred CCCCCEEEEeCCCCCCcHHHHH----HHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccc
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLA----GLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 165 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~----~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i 165 (168)
..+.++|||+|||.++++++|+ ++|++||.|..|.++. +|.++|||||+|.+.++|++|++.|||..++|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3467899999999999999999 9999999999998873 57889999999999999999999999999999999
Q ss_pred ee
Q 030975 166 KK 167 (168)
Q Consensus 166 ~~ 167 (168)
++
T Consensus 82 ~v 83 (97)
T 1nu4_A 82 RI 83 (97)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 129
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.78 E-value=1e-18 Score=126.34 Aligned_cols=76 Identities=26% Similarity=0.416 Sum_probs=73.1
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
+.++|||+|||.++++++|+++|+.||.|..+.+++++.+|+++|||||+|.+.++|++|++.|+|..++|+.|++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 77 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKV 77 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEE
Confidence 4689999999999999999999999999999999999989999999999999999999999999999999999876
No 130
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=1.3e-18 Score=118.67 Aligned_cols=71 Identities=23% Similarity=0.427 Sum_probs=66.2
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.....++|||+|||.++++++|+++|++||.|..+.++ +|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34557899999999999999999999999999999987 689999999999999999999999999999986
No 131
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=116.09 Aligned_cols=72 Identities=21% Similarity=0.411 Sum_probs=66.5
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC--Ccccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN--KLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~--gr~i~~ 167 (168)
..+.++|||+|||.++++++|+++|++||.|..|.+..+ +|||||+|.+.++|++|++.|||..++ |+.|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345689999999999999999999999999999998743 789999999999999999999999999 999876
No 132
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=114.40 Aligned_cols=72 Identities=32% Similarity=0.342 Sum_probs=65.4
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...++|||+|||+++++++|+++|+.||.|..| +.++.+|+ ||||+|.+.++|++|++ |||..++|+.|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 346799999999999999999999999999987 66666666 99999999999999999 99999999999764
No 133
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.77 E-value=3e-18 Score=114.63 Aligned_cols=71 Identities=21% Similarity=0.372 Sum_probs=65.8
Q ss_pred CCCCCCEEEEeCCCC-CCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPF-SVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~-~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...+.++|||+|||. ++++++|+++|+.||.|..+.+. +|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 445678999999998 99999999999999999999883 789999999999999999999999999999986
No 134
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=4.2e-19 Score=118.10 Aligned_cols=73 Identities=22% Similarity=0.374 Sum_probs=66.8
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
....++|||+|||.++++++|+++|+.||.|..+ ..+|+++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3457899999999999999999999999988766 237899999999999999999999999999999999986
No 135
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5.6e-19 Score=121.47 Aligned_cols=65 Identities=23% Similarity=0.358 Sum_probs=60.5
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCC---CCcceEEEEEecCHHHHHHHHHHh
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVT---GRSRGFGFVTMSSVEEVEAAAQQF 155 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~t---g~~~g~~FV~f~~~~~a~~Al~~l 155 (168)
....++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++|++.|
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 34578999999999999999999999999999 888888777 799999999999999999999988
No 136
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=4.9e-19 Score=118.91 Aligned_cols=69 Identities=25% Similarity=0.397 Sum_probs=65.8
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
++|||+|||.++++++|+++|++||.|..|.++.+ ++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 69 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRV 69 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEE
Confidence 47999999999999999999999999999999876 7899999999999999999999999999999986
No 137
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.77 E-value=2.6e-18 Score=124.69 Aligned_cols=78 Identities=23% Similarity=0.407 Sum_probs=74.4
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...++|||+|||.++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 169 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 169 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 347899999999999999999999999999999999998899999999999999999999999999999999999873
No 138
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=2.1e-18 Score=116.28 Aligned_cols=71 Identities=21% Similarity=0.299 Sum_probs=65.9
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...+.++|||+|||.++++++|+++|++||.|..|.++ +|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 34567899999999999999999999999999999887 459999999999999999999999999999986
No 139
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=2e-18 Score=127.78 Aligned_cols=78 Identities=36% Similarity=0.457 Sum_probs=73.1
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.....++|||+|||.++++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|++|++. +|..++|+.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 345678999999999999999999999999999999999998999999999999999999999985 999999999876
No 140
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.77 E-value=1.4e-19 Score=129.06 Aligned_cols=76 Identities=16% Similarity=0.131 Sum_probs=69.0
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.....++|||+|||+++++++|+++|++|| |..|.|++|+. |+++|||||+|.+.++|++|+ .+|+..++||.|++
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 345678999999999999999999999999 77999999985 999999999999999999999 69999999999876
No 141
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.7e-18 Score=113.73 Aligned_cols=73 Identities=29% Similarity=0.374 Sum_probs=66.4
Q ss_pred CCCCCCCCEEEEeCCCCCCcHHHHHHHhhcc--CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcc
Q 030975 87 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETA--GNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLS 164 (168)
Q Consensus 87 ~~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~--G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~ 164 (168)
.......++|||+|||.++++++|+++|++| |.|..+.+. +|||||+|.+.++|++|++.|||..++|+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3445567899999999999999999999999 899998764 579999999999999999999999999999
Q ss_pred cee
Q 030975 165 PKK 167 (168)
Q Consensus 165 i~~ 167 (168)
|++
T Consensus 81 l~v 83 (99)
T 2cpd_A 81 IEV 83 (99)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 142
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=113.00 Aligned_cols=72 Identities=21% Similarity=0.284 Sum_probs=66.2
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
.....++|||+|||.++++++|+++|++||.|..+.+++ +||||+|.+.++|++|++.|||..++|+.|+++
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345678999999999999999999999999999999873 499999999999999999999999999999863
No 143
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=112.73 Aligned_cols=71 Identities=30% Similarity=0.419 Sum_probs=65.7
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.....++|||+|||.++++++|+++|++||.|..+.+++ |||||+|.+.++|++|++.|||..++|+.|++
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345678999999999999999999999999999999873 49999999999999999999999999999986
No 144
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.76 E-value=1.1e-18 Score=120.33 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=62.4
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccc
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 165 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i 165 (168)
...++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|++|++.|||..|+|+.|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~ 81 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 81 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEe
Confidence 45689999999999999999999999999999999865 899999999999999999999999999984
No 145
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=2e-18 Score=123.87 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=69.6
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 88 ~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
......++|||+|||+++++++|+++|++||.|..|.++++ ++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999876 5899999999999999999999999999999986
No 146
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.6e-18 Score=114.48 Aligned_cols=71 Identities=24% Similarity=0.444 Sum_probs=64.7
Q ss_pred CCCCCCEEEEeCCCC-CCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPF-SVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~-~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...+.++|||+|||+ ++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345688999999998 99999999999999999999884 689999999999999999999999999999876
No 147
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.76 E-value=4.7e-18 Score=127.59 Aligned_cols=77 Identities=16% Similarity=0.351 Sum_probs=73.8
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...++|||+|||.++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|||..++|+.|++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V 199 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 199 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEE
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999976
No 148
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=3.1e-18 Score=116.79 Aligned_cols=69 Identities=28% Similarity=0.397 Sum_probs=64.9
Q ss_pred CCCCEEEEeCCCCC-CcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFS-VDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~-~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...++|||+|||.+ +++++|+++|++||.|..|.+ ++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34689999999999 999999999999999999988 5789999999999999999999999999999976
No 149
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=114.39 Aligned_cols=75 Identities=27% Similarity=0.239 Sum_probs=67.5
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEE-EEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMV-EVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v-~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
....++|||+|||+++++++|+++|+.||.|..+ .++.++.+|. |||+|.+.++|++|++.|||..++|+.|+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456899999999999999999999999999999 5888765443 9999999999999999999999999999863
No 150
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=3.3e-18 Score=142.42 Aligned_cols=78 Identities=19% Similarity=0.396 Sum_probs=74.4
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
.+.++|||+|||.++++++|+++|++||.|..|.|+.++.+|+++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 456899999999999999999999999999999999998899999999999999999999999999999999999873
No 151
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.75 E-value=7.5e-19 Score=125.20 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=68.3
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEE--E---eecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCc
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVE--V---IYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKL 163 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~--l---~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr 163 (168)
...+.++|||+|||+++++++|+++|+.||.|..+. + +....+|+++|||||+|.+.++|++|++.|||..++|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 345678999999999999999999999999987641 1 11123789999999999999999999999999999999
Q ss_pred ccee
Q 030975 164 SPKK 167 (168)
Q Consensus 164 ~i~~ 167 (168)
.|++
T Consensus 121 ~l~V 124 (143)
T 3egn_A 121 PMVV 124 (143)
T ss_dssp ECEE
T ss_pred EEEE
Confidence 9986
No 152
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-18 Score=117.94 Aligned_cols=70 Identities=14% Similarity=0.066 Sum_probs=65.3
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
..++|||+|||.++++++|+++|++||.|..|.++. .+|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 78 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYL 78 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Confidence 357999999999999999999999999999998873 5789999999999999999999999999999976
No 153
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.75 E-value=3e-18 Score=112.46 Aligned_cols=70 Identities=23% Similarity=0.281 Sum_probs=65.5
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...++|||+|||+++++++|+++|++| .|..+.+. +++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 72 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIV 72 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 356899999999999999999999999 99999884 67899999999999999999999999999999986
No 154
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.75 E-value=3.5e-18 Score=111.41 Aligned_cols=71 Identities=30% Similarity=0.574 Sum_probs=65.3
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhcc----C-------CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETA----G-------NVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV 159 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~----G-------~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~ 159 (168)
.+.++|||+|||.++++++|+++|++| | .|..+.+.++ +|||||+|.+.++|++|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 346899999999999999999999999 8 8999988754 799999999999999999 899999
Q ss_pred eCCccceeC
Q 030975 160 SNKLSPKKK 168 (168)
Q Consensus 160 ~~gr~i~~k 168 (168)
++|+.|+++
T Consensus 77 ~~g~~l~V~ 85 (87)
T 2hzc_A 77 FQGQSLKIR 85 (87)
T ss_dssp ETTEECEEE
T ss_pred ECCeEEEEe
Confidence 999999863
No 155
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.75 E-value=6.4e-18 Score=127.74 Aligned_cols=75 Identities=29% Similarity=0.437 Sum_probs=70.3
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...+|||+|||+++++++|+++|+.||.|..++|++|. +.++|||||+|.+.++|++|++.|||..|+|+.|+|+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~ 176 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 176 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45789999999999999999999999999999999985 5689999999999999999999999999999999873
No 156
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.75 E-value=4.9e-18 Score=127.52 Aligned_cols=76 Identities=21% Similarity=0.385 Sum_probs=70.0
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
..++|||+|||.++++++|+++|+.||.|..|.+++++.+|+++|||||+|.+.++|++|++.|+|..++|+.|++
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 3579999999999999999999999999999999999889999999999999999999999999999999999876
No 157
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.75 E-value=7.3e-18 Score=124.96 Aligned_cols=78 Identities=23% Similarity=0.393 Sum_probs=74.7
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
....++|||+|||.++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 188 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 188 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 356799999999999999999999999999999999999889999999999999999999999999999999999986
No 158
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.7e-18 Score=113.55 Aligned_cols=71 Identities=21% Similarity=0.227 Sum_probs=63.9
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCC-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC-ceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGN-VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG-YVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~-i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g-~~~~gr~i~~ 167 (168)
....++|||+|||.++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..++|+.|++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 345789999999999999999999999999 6666552 478999999999999999999999 9999999986
No 159
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.8e-18 Score=116.71 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=64.8
Q ss_pred CCCCCEEEEeCCCCC-CcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC--CceeCCccce
Q 030975 90 FSPDLKLFVGNLPFS-VDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN--GYVSNKLSPK 166 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~-~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~--g~~~~gr~i~ 166 (168)
..+.++|||+|||++ +++++|+++|++||.|.+|.|++ .+|||||+|.+.++|++|++.|+ +..++||.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445789999999998 99999999999999999999973 47999999999999999999886 4669999997
Q ss_pred e
Q 030975 167 K 167 (168)
Q Consensus 167 ~ 167 (168)
+
T Consensus 96 V 96 (112)
T 1x4f_A 96 V 96 (112)
T ss_dssp E
T ss_pred E
Confidence 6
No 160
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=111.26 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=65.0
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.....++|||+|| ++++++|+++|++||.|..|.+. +++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4456789999996 89999999999999999999884 56899999999999999999999999999999986
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=6e-18 Score=121.72 Aligned_cols=73 Identities=23% Similarity=0.388 Sum_probs=68.9
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
++|||+|||.++++++|+++|+.||.|..+.++.++ +++++|||||+|.+.++|++|++.|+|..++|+.|++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 73 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKI 73 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEE
Confidence 589999999999999999999999999999999997 5889999999999999999999999999999999876
No 162
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.74 E-value=1.7e-17 Score=119.78 Aligned_cols=79 Identities=29% Similarity=0.474 Sum_probs=74.1
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--cccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK--LSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~g--r~i~~ 167 (168)
....++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..++| ++|++
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3457899999999999999999999999999999999998899999999999999999999999999999988 88876
Q ss_pred C
Q 030975 168 K 168 (168)
Q Consensus 168 k 168 (168)
+
T Consensus 166 ~ 166 (168)
T 1b7f_A 166 R 166 (168)
T ss_dssp E
T ss_pred E
Confidence 3
No 163
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.73 E-value=1.4e-17 Score=120.92 Aligned_cols=70 Identities=27% Similarity=0.421 Sum_probs=66.4
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCC--CcceEEEEEecCHHHHHHHHHHhCCceeC
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTG--RSRGFGFVTMSSVEEVEAAAQQFNGYVSN 161 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg--~~~g~~FV~f~~~~~a~~Al~~l~g~~~~ 161 (168)
+.++|||+|||.++++++|+++|++||.|..+++++++.+| +++|||||+|.+.++|++|++.|+|..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 46799999999999999999999999999999999998776 89999999999999999999999998776
No 164
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.73 E-value=1.6e-17 Score=122.86 Aligned_cols=77 Identities=27% Similarity=0.464 Sum_probs=72.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
...++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|++. +|..++|+.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVR 178 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 3458999999999999999999999999999999999998999999999999999999999985 8999999999763
No 165
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.73 E-value=2e-17 Score=119.07 Aligned_cols=75 Identities=31% Similarity=0.505 Sum_probs=71.1
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccc
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 165 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i 165 (168)
....+|||+|||.++++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..++|+.+
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 160 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATE 160 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSS
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCcc
Confidence 356789999999999999999999999999999999998899999999999999999999999999999999863
No 166
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.1e-18 Score=116.11 Aligned_cols=71 Identities=24% Similarity=0.285 Sum_probs=63.0
Q ss_pred CCCCEEEE--eCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee-----CCc
Q 030975 91 SPDLKLFV--GNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS-----NKL 163 (168)
Q Consensus 91 ~~~~~lfV--~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~-----~gr 163 (168)
.+.++||| |||++++++++|+++|++||.|..|.++. .+|||||+|.+.++|++|++.|||.++ .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45688999 77999999999999999999999998763 278999999999999999999999998 566
Q ss_pred ccee
Q 030975 164 SPKK 167 (168)
Q Consensus 164 ~i~~ 167 (168)
+|.+
T Consensus 97 ~l~v 100 (114)
T 2cq2_A 97 TLYL 100 (114)
T ss_dssp ECEE
T ss_pred EEEE
Confidence 6653
No 167
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.73 E-value=4.1e-18 Score=123.12 Aligned_cols=75 Identities=31% Similarity=0.418 Sum_probs=71.8
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
.++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++ ++|..++|+.|+++
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~ 161 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIK 161 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEE
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEe
Confidence 5689999999999999999999999999999999998899999999999999999999998 89999999999873
No 168
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.72 E-value=9.2e-18 Score=121.26 Aligned_cols=74 Identities=26% Similarity=0.482 Sum_probs=68.8
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
+.++|||+|||.++++++|+++|+.||.|..|.+++++.+|+++|||||+|.+.++|++|++. +..++|+.|.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v 75 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDP 75 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccc
Confidence 467999999999999999999999999999999999998999999999999999999999984 67888888764
No 169
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.72 E-value=2.9e-17 Score=119.19 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=70.9
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC---Ccccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN---KLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~---gr~i~~ 167 (168)
...++|||+|||.++++++|+++|+.||.|..+.++++. +|+++|||||+|.+.++|++|++.|||..+. |++|++
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 356799999999999999999999999999999999997 6999999999999999999999999998776 388876
Q ss_pred C
Q 030975 168 K 168 (168)
Q Consensus 168 k 168 (168)
+
T Consensus 172 ~ 172 (175)
T 3nmr_A 172 K 172 (175)
T ss_dssp E
T ss_pred E
Confidence 4
No 170
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.72 E-value=1.7e-17 Score=125.16 Aligned_cols=71 Identities=23% Similarity=0.215 Sum_probs=66.7
Q ss_pred CCCEEEEeCCC-CCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 92 PDLKLFVGNLP-FSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 92 ~~~~lfV~nLp-~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
+..+|||+||+ +.+++++|+++|++||.|.+|++++++ +|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v 74 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNV 74 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEE
Confidence 46799999999 899999999999999999999998653 799999999999999999999999999999976
No 171
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.72 E-value=2.7e-17 Score=123.07 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccceeC
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKKK 168 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~k 168 (168)
.++|||+|||+++++++|+++|++||.|..|+++++. +|+++|||||+|.+.++|++|++.+ +..++|+.|+++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~ 182 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLIL 182 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEE
Confidence 5799999999999999999999999999999999987 5999999999999999999999855 559999999874
No 172
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=3.7e-17 Score=119.09 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=65.5
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--cccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK--LSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~g--r~i~~ 167 (168)
....+|||+||++.+++++|+++|++||.|++|.+..+ ..+|||||+|.+.++|++|++.|||..|.| +.|++
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 44567999999999999999999999999999998643 357999999999999999999999999965 88875
No 173
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.71 E-value=1.1e-16 Score=108.65 Aligned_cols=77 Identities=16% Similarity=0.039 Sum_probs=68.0
Q ss_pred CCCCEEEEeCCCC-----CCcHHHHHHHhhccCCeeEEEEeecCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCcc
Q 030975 91 SPDLKLFVGNLPF-----SVDSAQLAGLFETAGNVEMVEVIYDKVT-GRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLS 164 (168)
Q Consensus 91 ~~~~~lfV~nLp~-----~~~e~~L~~~F~~~G~i~~v~l~~~~~t-g~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~ 164 (168)
.+.++|+|.|+-. +-.+++|++.|++||.|.+|.|++++.+ ++++|||||+|.+.++|++|++.|||..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3567999999952 2367999999999999999999998654 789999999999999999999999999999999
Q ss_pred cee
Q 030975 165 PKK 167 (168)
Q Consensus 165 i~~ 167 (168)
|++
T Consensus 86 i~v 88 (105)
T 2pe8_A 86 VKA 88 (105)
T ss_dssp CEE
T ss_pred EEE
Confidence 976
No 174
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.6e-17 Score=107.30 Aligned_cols=66 Identities=21% Similarity=0.186 Sum_probs=59.4
Q ss_pred CCCE-EEEeCCCCCCcHHH----HHHHhhcc-CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccc
Q 030975 92 PDLK-LFVGNLPFSVDSAQ----LAGLFETA-GNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 165 (168)
Q Consensus 92 ~~~~-lfV~nLp~~~~e~~----L~~~F~~~-G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i 165 (168)
+..+ |||+|||+++++++ |+++|++| |.|.+| +| |+|||.|.+.++|++|++.|+|..+.||+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3445 99999999999987 56899999 599998 44 999999999999999999999999999999
Q ss_pred ee
Q 030975 166 KK 167 (168)
Q Consensus 166 ~~ 167 (168)
++
T Consensus 77 ~v 78 (96)
T 2diu_A 77 IV 78 (96)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 175
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=7.6e-17 Score=113.34 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=64.7
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceE-EEEEecCHHHHHHHHHHhCCceeCC--ccce
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGF-GFVTMSSVEEVEAAAQQFNGYVSNK--LSPK 166 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~-~FV~f~~~~~a~~Al~~l~g~~~~g--r~i~ 166 (168)
......|||+||++.+++++|+++|++||.|.+|.++.+ .+|| |||+|.+.++|++|++.|||..|.| +.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 345567899999999999999999999999999988764 2677 9999999999999999999999998 6665
Q ss_pred e
Q 030975 167 K 167 (168)
Q Consensus 167 ~ 167 (168)
+
T Consensus 100 I 100 (130)
T 3zzy_A 100 I 100 (130)
T ss_dssp E
T ss_pred E
Confidence 4
No 176
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=3.7e-17 Score=107.71 Aligned_cols=70 Identities=23% Similarity=0.266 Sum_probs=58.0
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCce--eCCccce
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYV--SNKLSPK 166 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~--~~gr~i~ 166 (168)
......+|||||||+++++++|+++|++||.|.+|.++++ ++|||||+|.+.++|++ ++|.. ++|+.|+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3456789999999999999999999999999999999864 78999999999999983 45554 4588876
Q ss_pred e
Q 030975 167 K 167 (168)
Q Consensus 167 ~ 167 (168)
+
T Consensus 78 v 78 (89)
T 3d2w_A 78 I 78 (89)
T ss_dssp E
T ss_pred E
Confidence 5
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.69 E-value=9e-17 Score=125.68 Aligned_cols=76 Identities=18% Similarity=0.323 Sum_probs=70.1
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHH----HHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcc
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLA----GLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLS 164 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~----~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~ 164 (168)
...+.++|||+|||.++++++|+ ++|+.||.|..|++++ +|+++|||||+|.+.++|++|++.|||..++|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34568899999999999999976 8999999999999885 6889999999999999999999999999999999
Q ss_pred cee
Q 030975 165 PKK 167 (168)
Q Consensus 165 i~~ 167 (168)
|++
T Consensus 82 l~v 84 (282)
T 3pgw_A 82 MRI 84 (282)
T ss_pred EEE
Confidence 976
No 178
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=1.5e-16 Score=111.17 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=61.5
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceE-EEEEecCHHHHHHHHHHhCCceeCC--cccee
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGF-GFVTMSSVEEVEAAAQQFNGYVSNK--LSPKK 167 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~-~FV~f~~~~~a~~Al~~l~g~~~~g--r~i~~ 167 (168)
....|||+||++.+++++|+++|++||.|.+|.|.. + .|| |||+|.+.++|++|++.|||..|+| +.|++
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 345578999999999999999999999999999864 2 276 9999999999999999999999988 46654
No 179
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.68 E-value=1e-16 Score=111.41 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=64.4
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
....++|||+|+ ++++++|+++|++||.|..|.+. .++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 356789999996 69999999999999999999985 56899999999999999999999999999999986
No 180
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.67 E-value=3.9e-16 Score=122.18 Aligned_cols=76 Identities=26% Similarity=0.378 Sum_probs=73.2
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
..++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|+|..++|+.|++
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 169 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYV 169 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4679999999999999999999999999999999999989999999999999999999999999999999999876
No 181
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.4e-17 Score=106.68 Aligned_cols=70 Identities=21% Similarity=0.268 Sum_probs=59.6
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...++|||+|||.++++++|+++|++||.|..|.++.+ ++|||||+|.+.++|++|+.. +..++|+.|++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v 72 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHI 72 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEE
Confidence 35689999999999999999999999999999999854 689999999999999865431 34568888765
No 182
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=1.8e-16 Score=119.53 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=66.3
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCe--eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcc
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNV--EMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLS 164 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i--~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~ 164 (168)
.+.++|||+|||+.+++++|+++|++||.| ..++++.++ +..+|||||+|.+.++|.+|++.|||+.++|+.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 456899999999999999999999999999 899998775 566799999999999999999999999999984
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=3.3e-16 Score=119.52 Aligned_cols=73 Identities=23% Similarity=0.294 Sum_probs=68.3
Q ss_pred CCCCCEEEEeCCCC-CCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPF-SVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~-~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
..+.++|||+|||. ++++++|+++|+.||.|..|++++++ +|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34578999999999 99999999999999999999999875 789999999999999999999999999999876
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.66 E-value=2.4e-16 Score=114.81 Aligned_cols=73 Identities=22% Similarity=0.374 Sum_probs=67.1
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
....++|||+|||.++++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|++.|||..++|+.|++
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 168 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 168 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456899999999999999999999999987766 458999999999999999999999999999999999986
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.65 E-value=5.5e-16 Score=121.31 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=72.6
Q ss_pred CCCCCEEEEeCCCCCC-cHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 90 FSPDLKLFVGNLPFSV-DSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~-~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
....++|||+|||.++ ++++|+++|+.||.|..+.++.+. +|+++|||||+|.+.++|.+|++.|||..++|+.|++
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 3567899999999995 999999999999999999999987 7999999999999999999999999999999999986
No 186
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.65 E-value=3.1e-16 Score=120.86 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=67.3
Q ss_pred CCCCCEEEEeCCCCCC---------cHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 030975 90 FSPDLKLFVGNLPFSV---------DSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS 160 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~---------~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~ 160 (168)
....++||||||+..+ +|++|+++|++||.|+.|+|+. ++|||||+|.+.++|+.|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567999999999998 7999999999999999999984 479999999999999999999999999
Q ss_pred ------------CCccceeC
Q 030975 161 ------------NKLSPKKK 168 (168)
Q Consensus 161 ------------~gr~i~~k 168 (168)
+|+.|.|+
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~ 224 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVK 224 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEE
T ss_pred eccccccccccCCCCEEEEE
Confidence 89998874
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.64 E-value=4.8e-16 Score=122.12 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=71.0
Q ss_pred CCCCCCEEEEeCCCCC-CcHHHHHHHhhccCCeeEEEEeecCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCccce
Q 030975 89 NFSPDLKLFVGNLPFS-VDSAQLAGLFETAGNVEMVEVIYDKV-TGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPK 166 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~-~~e~~L~~~F~~~G~i~~v~l~~~~~-tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~ 166 (168)
.....++|||+|||.. +++++|+++|+.||.|..|+++.+.. ||.++|||||+|.+.++|.+|+ .|||..++|+.|+
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3456789999999999 99999999999999999999999875 6999999999999999999999 9999999999997
Q ss_pred e
Q 030975 167 K 167 (168)
Q Consensus 167 ~ 167 (168)
+
T Consensus 285 V 285 (292)
T 2ghp_A 285 V 285 (292)
T ss_dssp E
T ss_pred E
Confidence 6
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.64 E-value=5.1e-17 Score=118.42 Aligned_cols=77 Identities=26% Similarity=0.305 Sum_probs=68.2
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...+.++|||+|||.++++++|+++|..||.+.. .++.+..+|+++|||||+|.+.++|++|++ |||..++|+.|++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 4566889999999999999999999999998766 344555589999999999999999999995 9999999999876
No 189
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=1.4e-15 Score=118.80 Aligned_cols=74 Identities=22% Similarity=0.325 Sum_probs=68.1
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-Ccccee
Q 030975 89 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN-KLSPKK 167 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~-gr~i~~ 167 (168)
.....++|||+|||.++++++|+++|+.||.|..|+++.++ +|||||+|.+.++|++|++.|||..++ |+.|++
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34457899999999999999999999999999999999654 689999999999999999999999999 999876
No 190
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.63 E-value=1.8e-16 Score=107.44 Aligned_cols=69 Identities=20% Similarity=0.205 Sum_probs=62.0
Q ss_pred EeCCCCCCcHHHHHHHh------------hccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccc
Q 030975 98 VGNLPFSVDSAQLAGLF------------ETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 165 (168)
Q Consensus 98 V~nLp~~~~e~~L~~~F------------~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i 165 (168)
+.||++.+++++|+++| ++||.|.+|.|+++. +++++|||||+|.+.++|++|++.|||..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888777666 999999999999887 58999999999999999999999999999999999
Q ss_pred ee
Q 030975 166 KK 167 (168)
Q Consensus 166 ~~ 167 (168)
++
T Consensus 99 ~v 100 (104)
T 1jmt_A 99 HA 100 (104)
T ss_dssp CE
T ss_pred EE
Confidence 76
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.63 E-value=3.8e-16 Score=116.08 Aligned_cols=70 Identities=24% Similarity=0.333 Sum_probs=66.3
Q ss_pred CCEEEEeCCCC-CCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 93 DLKLFVGNLPF-SVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 93 ~~~lfV~nLp~-~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.++|||+|||. ++++++|+++|+.||.|..|++++++ +|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 73 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 73 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEE
Confidence 57999999999 99999999999999999999998775 789999999999999999999999999999876
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.61 E-value=1.7e-15 Score=117.77 Aligned_cols=74 Identities=28% Similarity=0.500 Sum_probs=67.8
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 88 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 88 ~~~~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
....+.++|||+|||.++++++|+++|+.||.|..|.+.+ ++|||||+|.+.++|++|++.|||..++|+.|++
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 3445678999999999999999999999999999999864 3799999999999999999999999999999876
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.3e-15 Score=101.15 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=64.4
Q ss_pred CCCCCCEEEEeCCCCCCc-----------HHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 030975 89 NFSPDLKLFVGNLPFSVD-----------SAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNG 157 (168)
Q Consensus 89 ~~~~~~~lfV~nLp~~~~-----------e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g 157 (168)
.....++|+|.||-.... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|++|++.|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445678999999944332 5899999999999999955 554 3799999999999999999999999
Q ss_pred ceeCCcccee
Q 030975 158 YVSNKLSPKK 167 (168)
Q Consensus 158 ~~~~gr~i~~ 167 (168)
..++|+.|++
T Consensus 87 ~~~~gr~l~v 96 (112)
T 2dit_A 87 RWFGGRQITA 96 (112)
T ss_dssp CEETTEECEE
T ss_pred CEECCcEEEE
Confidence 9999999986
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.61 E-value=3.2e-15 Score=116.19 Aligned_cols=76 Identities=26% Similarity=0.295 Sum_probs=68.8
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh-CCceeC---Cccce
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF-NGYVSN---KLSPK 166 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l-~g~~~~---gr~i~ 166 (168)
.+..+|||+|||..+++++|+++|+.||.|..|.++.|. +|+++|||||+|.+.++|.+|++.| +|..+. |++|.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 356899999999999999999999999999999999995 8999999999999999999999999 455555 88876
Q ss_pred e
Q 030975 167 K 167 (168)
Q Consensus 167 ~ 167 (168)
+
T Consensus 173 v 173 (261)
T 3sde_A 173 V 173 (261)
T ss_dssp E
T ss_pred E
Confidence 5
No 195
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.60 E-value=3e-15 Score=101.60 Aligned_cols=76 Identities=20% Similarity=0.118 Sum_probs=66.1
Q ss_pred CCCEEEEeCC--CCCCc--------HHHHHHHhhccCCeeEEEEeecCCC--CCcceEEEEEecCHHHHHHHHHHhCCce
Q 030975 92 PDLKLFVGNL--PFSVD--------SAQLAGLFETAGNVEMVEVIYDKVT--GRSRGFGFVTMSSVEEVEAAAQQFNGYV 159 (168)
Q Consensus 92 ~~~~lfV~nL--p~~~~--------e~~L~~~F~~~G~i~~v~l~~~~~t--g~~~g~~FV~f~~~~~a~~Al~~l~g~~ 159 (168)
+.+.|.+.|+ +.++. +++|++.|++||.|.+|.|++++.+ ++++|||||+|.+.++|++|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4678899998 43433 3689999999999999999998754 4789999999999999999999999999
Q ss_pred eCCcccee
Q 030975 160 SNKLSPKK 167 (168)
Q Consensus 160 ~~gr~i~~ 167 (168)
++||.|++
T Consensus 84 f~GR~i~v 91 (105)
T 3v4m_A 84 FANRVVVT 91 (105)
T ss_dssp ETTEECEE
T ss_pred eCCCEEEE
Confidence 99999976
No 196
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.60 E-value=2.2e-15 Score=118.34 Aligned_cols=76 Identities=16% Similarity=0.271 Sum_probs=66.2
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAG-NVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G-~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
...++|||+|||.++++++|+++|+.|| .|..|.++.++. |.++|||||+|.+.++|++|++.|+|..++|+.|++
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 191 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVT 191 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3578999999999999999999999999 999999999874 889999999999999999999999999999999876
No 197
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.59 E-value=1.5e-16 Score=117.77 Aligned_cols=69 Identities=28% Similarity=0.524 Sum_probs=60.5
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccC-----------CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAG-----------NVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS 160 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G-----------~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~ 160 (168)
..++|||+|||.++++++|+++|+.|| .|..+.+ ++++|||||+|.+.++|++|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 468999999999999999999999994 4555544 566899999999999999999 7999999
Q ss_pred CCcccee
Q 030975 161 NKLSPKK 167 (168)
Q Consensus 161 ~gr~i~~ 167 (168)
+|+.|++
T Consensus 76 ~g~~i~v 82 (198)
T 2yh0_A 76 QGQSLKI 82 (198)
T ss_dssp TTEEEEE
T ss_pred cCceEEE
Confidence 9999876
No 198
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.59 E-value=8.3e-15 Score=101.41 Aligned_cols=76 Identities=17% Similarity=0.079 Sum_probs=66.6
Q ss_pred CCCEEEEeCCC--CCC---cHHHHHHHhhccCCeeEEEEeecCC----CCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 030975 92 PDLKLFVGNLP--FSV---DSAQLAGLFETAGNVEMVEVIYDKV----TGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 162 (168)
Q Consensus 92 ~~~~lfV~nLp--~~~---~e~~L~~~F~~~G~i~~v~l~~~~~----tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~g 162 (168)
+.+.|++.|+- .++ -+++|++.|++||.|.+|.|++++. +++++||+||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 46789999983 222 3689999999999999999999864 46789999999999999999999999999999
Q ss_pred cccee
Q 030975 163 LSPKK 167 (168)
Q Consensus 163 r~i~~ 167 (168)
|.|++
T Consensus 99 R~i~v 103 (118)
T 3ue2_A 99 RKVVA 103 (118)
T ss_dssp EECEE
T ss_pred cEEEE
Confidence 99976
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.57 E-value=5.4e-15 Score=107.04 Aligned_cols=69 Identities=29% Similarity=0.571 Sum_probs=61.8
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhcc----C-------CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETA----G-------NVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS 160 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~----G-------~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~ 160 (168)
+.++|||+|||.++++++|+++|++| | .|..+.+. +++|||||+|.+.++|++|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46799999999999999999999999 6 66666654 45899999999999999999 7999999
Q ss_pred CCcccee
Q 030975 161 NKLSPKK 167 (168)
Q Consensus 161 ~gr~i~~ 167 (168)
+|+.|++
T Consensus 76 ~g~~i~v 82 (172)
T 2g4b_A 76 QGQSLKI 82 (172)
T ss_dssp TTEECEE
T ss_pred cCceeee
Confidence 9999876
No 200
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.57 E-value=6e-15 Score=109.55 Aligned_cols=72 Identities=25% Similarity=0.333 Sum_probs=66.7
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-Ccccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAG-NVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN-KLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G-~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~-gr~i~~ 167 (168)
.+.++|||+|||.++++++|+++|+.|| .|..++++.+ .+|||||+|.+.++|.+|++.|||..++ |+.|++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 4578999999999999999999999999 9999999754 2789999999999999999999999999 999876
No 201
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.55 E-value=1.8e-14 Score=109.87 Aligned_cols=72 Identities=25% Similarity=0.333 Sum_probs=66.5
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-Ccccee
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAG-NVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN-KLSPKK 167 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G-~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~-gr~i~~ 167 (168)
.+.++|||+|||.++++++|+++|+.|| .|..++++.+ .+|||||+|.+.++|.+|++.|||..++ |+.|++
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 4578999999999999999999999999 9999999653 3789999999999999999999999999 999976
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.50 E-value=3.5e-14 Score=114.61 Aligned_cols=66 Identities=24% Similarity=0.259 Sum_probs=59.2
Q ss_pred CCCCCEEEEeC--CCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 030975 90 FSPDLKLFVGN--LPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 161 (168)
Q Consensus 90 ~~~~~~lfV~n--Lp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~ 161 (168)
..+..+||||| |++.++|++|+++|++||.|..|.+.. +||||||+|.+.++|++|++.|||.++.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 45678999999 578999999999999999999987753 4799999999999999999999999883
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=8.3e-13 Score=88.72 Aligned_cols=58 Identities=21% Similarity=0.156 Sum_probs=51.7
Q ss_pred CCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 103 FSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 103 ~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.++++++|+++|++||.|..|.|+ ++++|||||+|.+.++|++|++.+++ +.|++|++
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V 84 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKI 84 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEE
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEE
Confidence 468999999999999999999988 47899999999999999999997554 67888876
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.43 E-value=8.5e-13 Score=90.70 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=60.0
Q ss_pred CCCEEEEeCC--CCCC--------cHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q 030975 92 PDLKLFVGNL--PFSV--------DSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSN 161 (168)
Q Consensus 92 ~~~~lfV~nL--p~~~--------~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~ 161 (168)
+.+.|.+.|+ +.+. -+++|++.|++||.|.+|.|.++. .+|||||+|.+.++|++|++.|||..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4567788887 2221 136789999999999999987653 4899999999999999999999999999
Q ss_pred Ccccee
Q 030975 162 KLSPKK 167 (168)
Q Consensus 162 gr~i~~ 167 (168)
||.|++
T Consensus 82 GR~i~v 87 (114)
T 3s6e_A 82 GKMITA 87 (114)
T ss_dssp TEECEE
T ss_pred CEEEEE
Confidence 999976
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1e-11 Score=85.96 Aligned_cols=74 Identities=12% Similarity=0.048 Sum_probs=64.6
Q ss_pred CCCCCCCEEEEeCCCCC-CcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecC-HHHHHHHHHHhC--CceeCCc
Q 030975 88 SNFSPDLKLFVGNLPFS-VDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSS-VEEVEAAAQQFN--GYVSNKL 163 (168)
Q Consensus 88 ~~~~~~~~lfV~nLp~~-~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~-~~~a~~Al~~l~--g~~~~gr 163 (168)
-....+..|||+||+.+ +++++|+++|++||.|..|.+..+.. .|||.|.+ .++|..|++.+| |..|.|.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 35567899999999999 99999999999999999999998764 49999999 899999999994 7778886
Q ss_pred ccee
Q 030975 164 SPKK 167 (168)
Q Consensus 164 ~i~~ 167 (168)
.++.
T Consensus 87 ~~~~ 90 (121)
T 1owx_A 87 EVTW 90 (121)
T ss_dssp SEEE
T ss_pred EEEE
Confidence 6543
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=2.9e-11 Score=79.19 Aligned_cols=69 Identities=19% Similarity=0.143 Sum_probs=58.7
Q ss_pred CCCCEEEEeCCCC-----CCcH---HHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 030975 91 SPDLKLFVGNLPF-----SVDS---AQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 162 (168)
Q Consensus 91 ~~~~~lfV~nLp~-----~~~e---~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~g 162 (168)
.++.+|+|.-.+. +.++ .+|.+.|.+||.|..++++.|+ +||+|.+.++|.+|++ |||+.++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4577899987762 2342 5789999999999999999774 8999999999999998 99999999
Q ss_pred ccceeC
Q 030975 163 LSPKKK 168 (168)
Q Consensus 163 r~i~~k 168 (168)
|.|+++
T Consensus 76 r~LkV~ 81 (91)
T 2dnr_A 76 RTITIA 81 (91)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 999874
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.18 E-value=6e-11 Score=89.77 Aligned_cols=62 Identities=19% Similarity=0.064 Sum_probs=56.5
Q ss_pred cHHHHHHHhhccCCeeEEEEeecC----CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 106 DSAQLAGLFETAGNVEMVEVIYDK----VTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 106 ~e~~L~~~F~~~G~i~~v~l~~~~----~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
.+++|++.|++||.|..+.|+++. .+++++|++||+|.+.++|++|++.|||..++||.|++
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~ 207 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVA 207 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEE
Confidence 467899999999999999999664 45699999999999999999999999999999999975
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=5.5e-11 Score=78.28 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=59.9
Q ss_pred CCCCCEEEEeCCCCC------CcH---HHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q 030975 90 FSPDLKLFVGNLPFS------VDS---AQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVS 160 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~------~~e---~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~ 160 (168)
..++.+|+|.-++.. .++ .+|.+.|.+||+|..++++.|+ +||+|.+.++|.+|++ |||+.+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 456789999888632 332 4688999999999999999774 9999999999999999 999999
Q ss_pred CCccceeC
Q 030975 161 NKLSPKKK 168 (168)
Q Consensus 161 ~gr~i~~k 168 (168)
+||.|+++
T Consensus 83 ~Gr~L~V~ 90 (95)
T 1ufw_A 83 KGRAVKIS 90 (95)
T ss_dssp TTEEEEEE
T ss_pred CCeEEEEe
Confidence 99999874
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.71 E-value=9.1e-08 Score=64.35 Aligned_cols=71 Identities=7% Similarity=0.048 Sum_probs=65.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhcc-----CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccc
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETA-----GNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 165 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~-----G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i 165 (168)
+..++|-+-|||..++++.|+.+.+.+ |.+..+.+..|. |-|+|+|.+...|-+|.=.|+|.+++||.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 447789999999999999999999999 999999999885 469999999999999988899999999999
Q ss_pred ee
Q 030975 166 KK 167 (168)
Q Consensus 166 ~~ 167 (168)
++
T Consensus 93 r~ 94 (117)
T 2l9w_A 93 RS 94 (117)
T ss_dssp EE
T ss_pred Ee
Confidence 85
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.05 E-value=1.6e-05 Score=52.95 Aligned_cols=71 Identities=14% Similarity=-0.062 Sum_probs=58.7
Q ss_pred CCCCEEEEeCCCCCCc-----HHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCccc
Q 030975 91 SPDLKLFVGNLPFSVD-----SAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSP 165 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~-----e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i 165 (168)
+-..+|+|.||+.++- .+.++++|..|+.+......+.- .-..|.|.+.++|.+|-..|++..+.|+.|
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 3467899999987652 25789999999998887776542 357899999999999999999999999988
Q ss_pred ee
Q 030975 166 KK 167 (168)
Q Consensus 166 ~~ 167 (168)
++
T Consensus 77 r~ 78 (104)
T 1wey_A 77 KL 78 (104)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.81 E-value=0.00017 Score=46.98 Aligned_cols=69 Identities=16% Similarity=0.280 Sum_probs=57.3
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCC--CcceEEEEEecCHHHHHHHHHHhCCceeCC
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTG--RSRGFGFVTMSSVEEVEAAAQQFNGYVSNK 162 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg--~~~g~~FV~f~~~~~a~~Al~~l~g~~~~g 162 (168)
.+|.|++||..++|+++.+.++....+.....+..+.+. ..-.-|||.|.+.+++..-.+.++|+.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 479999999999999999999998887777776654332 234679999999999999999999988654
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=0.00037 Score=46.24 Aligned_cols=69 Identities=20% Similarity=0.110 Sum_probs=54.6
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHhhc-----cCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcc
Q 030975 90 FSPDLKLFVGNLPFSVDSAQLAGLFET-----AGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLS 164 (168)
Q Consensus 90 ~~~~~~lfV~nLp~~~~e~~L~~~F~~-----~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~ 164 (168)
.....+|.|.|||..++++.|.-+|+. -|+|+.++... +-|+|+|.+.+.|++.|+. ..+.++|.+
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~ 75 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQ 75 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSB
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeE
Confidence 345789999999999999999999987 25688876642 4689999999999999973 355666666
Q ss_pred cee
Q 030975 165 PKK 167 (168)
Q Consensus 165 i~~ 167 (168)
|.+
T Consensus 76 LsV 78 (104)
T 2dhx_A 76 LSL 78 (104)
T ss_dssp CEE
T ss_pred EEE
Confidence 544
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.72 E-value=0.00017 Score=49.18 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=54.2
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcc
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLS 164 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~ 164 (168)
...+-|.|-+.|.. ....+..+|++||.|.+.... ....+-.|.|.++.+|++||. .||..++|..
T Consensus 22 ~~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~ 87 (119)
T 1wwh_A 22 LDDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESI 87 (119)
T ss_dssp GGGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTE
T ss_pred CCCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCE
Confidence 34678999999987 467788899999999988762 234589999999999999998 7999998643
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.61 E-value=0.00039 Score=45.70 Aligned_cols=55 Identities=29% Similarity=0.344 Sum_probs=46.4
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l 155 (168)
....++| ++|......||.++|+.|| -..|+++-|. -|||.|.+++.|..|+..+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3445556 9999999999999999999 4567777664 7999999999999999865
No 215
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.21 E-value=0.00041 Score=48.03 Aligned_cols=74 Identities=20% Similarity=0.186 Sum_probs=52.2
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHhhccCCeeE-EEEeec------------CCCC-CcceEEEEEecCHHHHHHHHHHhCC
Q 030975 92 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEM-VEVIYD------------KVTG-RSRGFGFVTMSSVEEVEAAAQQFNG 157 (168)
Q Consensus 92 ~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~-v~l~~~------------~~tg-~~~g~~FV~f~~~~~a~~Al~~l~g 157 (168)
....|.|-|.|.+. ...+-+.|++||.|.+ +....+ +..+ ....+-.|+|.+..+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 35578899998764 4566678999999866 222110 0011 135678999999999999998 799
Q ss_pred ceeCCcccee
Q 030975 158 YVSNKLSPKK 167 (168)
Q Consensus 158 ~~~~gr~i~~ 167 (168)
..++|..|-+
T Consensus 84 ~ii~G~mIGV 93 (132)
T 3p3d_A 84 AVFNGVLLGV 93 (132)
T ss_dssp CEETTEECEE
T ss_pred eEeCcEEEEE
Confidence 9999986544
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.09 E-value=0.0011 Score=43.67 Aligned_cols=53 Identities=25% Similarity=0.303 Sum_probs=45.3
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 030975 96 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 156 (168)
Q Consensus 96 lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~ 156 (168)
||+-++|......||.++|+.|| -..|.++-|. -|||.|.+++.|..|+..+.
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 44449999999999999999999 5677787764 79999999999999998764
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.93 E-value=0.001 Score=43.77 Aligned_cols=71 Identities=11% Similarity=0.223 Sum_probs=50.6
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCC--CCcceEEEEEecCHHHHHHHHHHhCCceeCCc
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVT--GRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKL 163 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~t--g~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr 163 (168)
.-+|.|+.||+.++|+++.+.++..-.+.....+..+.+ ...-.-|||.|.+.++...-.+.++|+.+.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 458999999999999998887766544333222222211 11234589999999999999999999886543
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.60 E-value=0.0013 Score=54.77 Aligned_cols=55 Identities=9% Similarity=0.151 Sum_probs=42.4
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQ 153 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~ 153 (168)
.+.|||. .+..+++.+|.++|++||.|..+.+..+. | -|+.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 4789997 79999999999999999999999887653 3 699999999999997765
No 219
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.09 E-value=0.4 Score=40.29 Aligned_cols=55 Identities=31% Similarity=0.381 Sum_probs=44.7
Q ss_pred CCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 030975 93 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFN 156 (168)
Q Consensus 93 ~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~ 156 (168)
...++|+ ++..+...+|.+.|+.||. ..|.++.+. .|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 4456665 8888899999999999994 466666443 79999999999999999884
No 220
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=79.31 E-value=0.32 Score=32.04 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCCCEEEEeCCCCCCcHHH
Q 030975 91 SPDLKLFVGNLPFSVDSAQ 109 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~ 109 (168)
....+|||+|||.++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3456799999999998764
No 221
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=57.78 E-value=28 Score=24.83 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=36.0
Q ss_pred EEEEeCCCC---------CCcHHHHHHHh--hccCCeeEEEEeecCCCCCcceEEEEEecC-HHHHHHHHH
Q 030975 95 KLFVGNLPF---------SVDSAQLAGLF--ETAGNVEMVEVIYDKVTGRSRGFGFVTMSS-VEEVEAAAQ 153 (168)
Q Consensus 95 ~lfV~nLp~---------~~~e~~L~~~F--~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~-~~~a~~Al~ 153 (168)
.+.|-|++. .....+|++.| ..|..++ |+..+++ ..+.|++.|.|.. -.-...|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 345556664 13457899977 8898755 5566664 4688999999963 333444443
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=52.13 E-value=34 Score=20.17 Aligned_cols=64 Identities=8% Similarity=0.150 Sum_probs=37.6
Q ss_pred EEEEeCC-CCCCcHHHHHHHhhccCC-----eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCcccee
Q 030975 95 KLFVGNL-PFSVDSAQLAGLFETAGN-----VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYVSNKLSPKK 167 (168)
Q Consensus 95 ~lfV~nL-p~~~~e~~L~~~F~~~G~-----i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~~~~gr~i~~ 167 (168)
++||..= -..+...+|..++..-+. |-.+.+.. .|.||+-.. +.++.+++.|++..+.|+.+++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v 71 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKV 71 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEE
Confidence 4555322 334666777777765433 45566542 278888864 5577888889999999998764
No 223
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=44.23 E-value=3.6 Score=28.63 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=15.3
Q ss_pred HHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEec
Q 030975 108 AQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMS 143 (168)
Q Consensus 108 ~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~ 143 (168)
+++.++|...|.|+... ..+|||||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn--------~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN--------VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE--------TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE--------CCCCeeEEeeC
Confidence 34455666666655431 23789999865
No 224
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=38.31 E-value=29 Score=26.33 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=26.3
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEee
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIY 127 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~ 127 (168)
.-+.|+|+|+.++...|.+++.. +.+..+.++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 46789999999999999999977 6666555444
No 225
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=36.45 E-value=14 Score=28.21 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=26.8
Q ss_pred CEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeec
Q 030975 94 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYD 128 (168)
Q Consensus 94 ~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~ 128 (168)
....|+|||+.++..-|.+++.....+..+.++..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 45789999999999999999986555665555443
No 226
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=35.40 E-value=88 Score=20.09 Aligned_cols=47 Identities=4% Similarity=0.164 Sum_probs=26.6
Q ss_pred CCcHHHHHHHhhc-cCC---eeEE-EEeecCCCCCcceEEEEEecCHHHHHHH
Q 030975 104 SVDSAQLAGLFET-AGN---VEMV-EVIYDKVTGRSRGFGFVTMSSVEEVEAA 151 (168)
Q Consensus 104 ~~~e~~L~~~F~~-~G~---i~~v-~l~~~~~tg~~~g~~FV~f~~~~~a~~A 151 (168)
.++..+|++.+.+ |+. +.-| .+......|++.|||.| |.+.+.|.+-
T Consensus 29 tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 29 TPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp CCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 4567777776654 443 2222 22223346777888865 6676666553
No 227
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=35.05 E-value=71 Score=22.34 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=28.8
Q ss_pred CcHHHHHHHhhccCCe---eEEEEeecCCCCCcceEEEEE
Q 030975 105 VDSAQLAGLFETAGNV---EMVEVIYDKVTGRSRGFGFVT 141 (168)
Q Consensus 105 ~~e~~L~~~F~~~G~i---~~v~l~~~~~tg~~~g~~FV~ 141 (168)
.++++|+++-.+.|.+ .++.+..|..+|+.+.|||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 5789999999888986 355666664489999999864
No 228
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=32.21 E-value=1e+02 Score=19.97 Aligned_cols=46 Identities=7% Similarity=0.028 Sum_probs=26.8
Q ss_pred CCcHHHHHHHhhc-cCC---eeEE-EEeecCCCCCcceEEEEEecCHHHHHH
Q 030975 104 SVDSAQLAGLFET-AGN---VEMV-EVIYDKVTGRSRGFGFVTMSSVEEVEA 150 (168)
Q Consensus 104 ~~~e~~L~~~F~~-~G~---i~~v-~l~~~~~tg~~~g~~FV~f~~~~~a~~ 150 (168)
.++..+|++-+.+ |+. +.-| .+...-..|++.|||.| |.+.+.|.+
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4567777776654 443 2222 22222346778888865 777777664
No 229
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=31.80 E-value=75 Score=19.85 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=19.5
Q ss_pred CeeEEEEeecCCCCCcceEEEEEecC
Q 030975 119 NVEMVEVIYDKVTGRSRGFGFVTMSS 144 (168)
Q Consensus 119 ~i~~v~l~~~~~tg~~~g~~FV~f~~ 144 (168)
+|.+|++..-...|+-+|||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 46777776666578889999888864
No 230
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=30.83 E-value=1.1e+02 Score=19.73 Aligned_cols=47 Identities=6% Similarity=-0.028 Sum_probs=27.4
Q ss_pred CCCcHHHHHHHhhc-cCC---eeEE-EEeecCCCCCcceEEEEEecCHHHHHH
Q 030975 103 FSVDSAQLAGLFET-AGN---VEMV-EVIYDKVTGRSRGFGFVTMSSVEEVEA 150 (168)
Q Consensus 103 ~~~~e~~L~~~F~~-~G~---i~~v-~l~~~~~tg~~~g~~FV~f~~~~~a~~ 150 (168)
..++..+|++-+.+ |+. +.-| .+......|++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 34567777776654 443 2222 23333356788888865 777777654
No 231
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=30.03 E-value=40 Score=21.07 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=26.0
Q ss_pred eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCc
Q 030975 120 VEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGY 158 (168)
Q Consensus 120 i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l~g~ 158 (168)
|..+.++. ...||-||++...++...+++...|.
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 55555542 36899999999999998888877664
No 232
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=29.90 E-value=19 Score=27.08 Aligned_cols=33 Identities=27% Similarity=0.504 Sum_probs=25.7
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCCeeEEEEeec
Q 030975 96 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYD 128 (168)
Q Consensus 96 lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~ 128 (168)
..|+|+|+.++...|.+++...+.+..+.++..
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Q 131 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQ 131 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEEe
Confidence 379999999999999999987666665555443
No 233
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=29.11 E-value=54 Score=25.95 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=18.9
Q ss_pred EEEEeCCCCCCcHHHHHHHhhc
Q 030975 95 KLFVGNLPFSVDSAQLAGLFET 116 (168)
Q Consensus 95 ~lfV~nLp~~~~e~~L~~~F~~ 116 (168)
-..|+|||+.++..-|.+++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999988888864
No 234
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=28.11 E-value=37 Score=22.05 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=22.7
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhCCc
Q 030975 132 GRSRGFGFVTMSSVEEVEAAAQQFNGY 158 (168)
Q Consensus 132 g~~~g~~FV~f~~~~~a~~Al~~l~g~ 158 (168)
...+||-||+=.+..++..|++.+.+.
T Consensus 48 ~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 48 EHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp TTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 346999999999999999999876543
No 235
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=28.03 E-value=57 Score=24.13 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=24.1
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCCeeEEEEe
Q 030975 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVI 126 (168)
Q Consensus 95 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~ 126 (168)
-+.|+|+|+.++...|.+++.....+..+.++
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m 128 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNKDCVPLAVFM 128 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTGGGCSEEEEE
T ss_pred cEEEEECchhccHHHHHHHHhcCCCCceEEEE
Confidence 47899999999999999988765444444443
No 236
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=26.87 E-value=99 Score=19.86 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=19.3
Q ss_pred CeeEEEEeecCCCCCcceEEEEEecC
Q 030975 119 NVEMVEVIYDKVTGRSRGFGFVTMSS 144 (168)
Q Consensus 119 ~i~~v~l~~~~~tg~~~g~~FV~f~~ 144 (168)
.|.+|++..-...|+-++||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 46677776665568888888888864
No 237
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=26.75 E-value=72 Score=23.67 Aligned_cols=31 Identities=19% Similarity=0.417 Sum_probs=22.7
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCCeeEEEE
Q 030975 95 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEV 125 (168)
Q Consensus 95 ~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l 125 (168)
-+.|+|+|+.++...+.+++.....+..+.+
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~ 122 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADMHF 122 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceEEE
Confidence 5789999999999988888765433444433
No 238
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=26.35 E-value=1e+02 Score=19.97 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=18.4
Q ss_pred CeeEEEEeecCCCCCcceEEEEEecC
Q 030975 119 NVEMVEVIYDKVTGRSRGFGFVTMSS 144 (168)
Q Consensus 119 ~i~~v~l~~~~~tg~~~g~~FV~f~~ 144 (168)
.|.+|++..-...|+-+|||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 36667666655567888888888864
No 239
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=24.55 E-value=1.4e+02 Score=18.93 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=44.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 030975 91 SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155 (168)
Q Consensus 91 ~~~~~lfV~nLp~~~~e~~L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l 155 (168)
..++-|-|-|+|..+-..++.-.....|---.|..+ .|-+.+.|.+.++...|++.|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 456778889999998888776666666755555444 356899999999999999876
No 240
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=23.53 E-value=2e+02 Score=21.85 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=30.4
Q ss_pred HHHHhhccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 030975 110 LAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155 (168)
Q Consensus 110 L~~~F~~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l 155 (168)
+++.|+.+|--.-. . ..|...|+-|+-+.+.+.|++.++.+
T Consensus 47 ~~~~~~~~~~~~~~-~----~~ga~gg~~~~~~~~~~~a~~~~~~l 87 (291)
T 1o57_A 47 IKQTFEQQGIGTLL-T----VPGAAGGVKYIPKMKQAEAEEFVQTL 87 (291)
T ss_dssp HHHHHHHTTSEEEE-E----ECSTTCEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEE-E----ecCCCCceEEcccCCHHHHHHHHHHH
Confidence 56788887653221 1 16899999999999999998887754
No 241
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=23.44 E-value=89 Score=26.77 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=38.4
Q ss_pred CCCCCcHHHHHHHhh----ccCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 030975 101 LPFSVDSAQLAGLFE----TAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQF 155 (168)
Q Consensus 101 Lp~~~~e~~L~~~F~----~~G~i~~v~l~~~~~tg~~~g~~FV~f~~~~~a~~Al~~l 155 (168)
.+.+.+--+|..+|- .+|-|.++.+-.-+. -..+.++++.|.+.++|..++..+
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHH
Confidence 444455557888883 478888887665542 345668899999999998888754
No 242
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=22.43 E-value=66 Score=20.17 Aligned_cols=9 Identities=56% Similarity=1.265 Sum_probs=7.0
Q ss_pred cceEEEEEe
Q 030975 134 SRGFGFVTM 142 (168)
Q Consensus 134 ~~g~~FV~f 142 (168)
.+|||||+-
T Consensus 19 ~KGfGFI~~ 27 (90)
T 3ulj_A 19 RMGFGFISM 27 (90)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEeEe
Confidence 489999963
No 243
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=21.22 E-value=35 Score=20.53 Aligned_cols=11 Identities=36% Similarity=0.960 Sum_probs=8.6
Q ss_pred cceEEEEEecC
Q 030975 134 SRGFGFVTMSS 144 (168)
Q Consensus 134 ~~g~~FV~f~~ 144 (168)
.+|||||+-.+
T Consensus 13 ~KGfGFI~~~d 23 (74)
T 2k5n_A 13 DKGFGFIKDEN 23 (74)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEEecCC
Confidence 48999998654
No 244
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=20.05 E-value=39 Score=19.80 Aligned_cols=11 Identities=45% Similarity=1.056 Sum_probs=8.6
Q ss_pred cceEEEEEecC
Q 030975 134 SRGFGFVTMSS 144 (168)
Q Consensus 134 ~~g~~FV~f~~ 144 (168)
.+|||||+=.+
T Consensus 12 ~kGfGFI~~~~ 22 (67)
T 3cam_A 12 AKGFGFITPDE 22 (67)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 48999998654
No 245
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=20.03 E-value=39 Score=20.36 Aligned_cols=11 Identities=18% Similarity=0.667 Sum_probs=8.7
Q ss_pred cceEEEEEecC
Q 030975 134 SRGFGFVTMSS 144 (168)
Q Consensus 134 ~~g~~FV~f~~ 144 (168)
.+|||||+-.+
T Consensus 11 ~KGfGFI~~~d 21 (74)
T 2kcm_A 11 AKKYGFIQGDD 21 (74)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEecCC
Confidence 48999998654
Done!