Your job contains 1 sequence.
>030977
MATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQ
LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL
RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030977
(168 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2143523 - symbol:AT5G03220 species:3702 "Arabi... 643 5.4e-63 1
TAIR|locus:2831839 - symbol:AT5G03500 species:3702 "Arabi... 626 3.4e-61 1
DICTYBASE|DDB_G0269568 - symbol:med7 "putative mediator c... 309 1.3e-27 1
UNIPROTKB|F1MIJ0 - symbol:HAVCR2 "Uncharacterized protein... 243 1.3e-20 1
UNIPROTKB|Q3T123 - symbol:MED7 "Mediator of RNA polymeras... 243 1.3e-20 1
UNIPROTKB|E2RK91 - symbol:MED7 "Uncharacterized protein" ... 243 1.3e-20 1
UNIPROTKB|E5RIE8 - symbol:MED7 "Mediator of RNA polymeras... 243 1.3e-20 1
UNIPROTKB|O43513 - symbol:MED7 "Mediator of RNA polymeras... 243 1.3e-20 1
UNIPROTKB|Q2F7Z4 - symbol:MED7 "Mediator of RNA polymeras... 243 1.3e-20 1
MGI|MGI:1913463 - symbol:Med7 "mediator complex subunit 7... 243 1.3e-20 1
RGD|6494481 - symbol:LOC100911235 "mediator of RNA polyme... 243 1.3e-20 1
UNIPROTKB|E1C6N9 - symbol:LOC100857575 "Uncharacterized p... 242 1.7e-20 1
UNIPROTKB|G3X7Z8 - symbol:HAVCR2 "Uncharacterized protein... 243 5.5e-20 1
ZFIN|ZDB-GENE-030131-4823 - symbol:med7 "mediator complex... 236 7.2e-20 1
FB|FBgn0051390 - symbol:MED7 "Mediator complex subunit 7"... 232 1.9e-19 1
POMBASE|SPBC14F5.08 - symbol:med7 "mediator complex subun... 179 6.9e-19 2
SGD|S000005495 - symbol:MED7 "Subunit of the RNA polymera... 225 1.1e-18 1
ASPGD|ASPL0000049115 - symbol:AN2123 species:162425 "Emer... 216 9.5e-18 1
CGD|CAL0003950 - symbol:orf19.232 species:5476 "Candida a... 157 8.4e-14 2
WB|WBGene00002324 - symbol:let-49 species:6239 "Caenorhab... 169 9.1e-13 1
UNIPROTKB|Q95Q17 - symbol:let-49 "Mediator of RNA polymer... 169 9.1e-13 1
>TAIR|locus:2143523 [details] [associations]
symbol:AT5G03220 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0016592 "mediator
complex" evidence=IDA] InterPro:IPR009244 Pfam:PF05983
EMBL:CP002688 EMBL:AB005240 GO:GO:0016592 GO:GO:0001104
EMBL:AL163002 EMBL:AK117518 EMBL:AF324995 EMBL:BT020299
EMBL:AY088796 IPI:IPI00523594 PIR:T48343 RefSeq:NP_195942.1
UniGene:At.19988 ProteinModelPortal:Q9LYW3 SMR:Q9LYW3 IntAct:Q9LYW3
STRING:Q9LYW3 PRIDE:Q9LYW3 EnsemblPlants:AT5G03220.1 GeneID:831902
KEGG:ath:AT5G03220 TAIR:At5g03220 eggNOG:NOG274591
HOGENOM:HOG000241102 InParanoid:Q9LYW3 KO:K15148 OMA:EYASAYT
PhylomeDB:Q9LYW3 ProtClustDB:CLSN2687549 Genevestigator:Q9LYW3
PANTHER:PTHR21428 Uniprot:Q9LYW3
Length = 168
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 128/168 (76%), Positives = 143/168 (85%)
Query: 1 MATAAXXXXXXXXRLYKDYLQNPNSAXXXXXXIEGTYICFGGNYTTDDVLPSLEEQGVRQ 60
MATA RLYKDY +NPNSA IEGTY+CFGGNYTT+DVLPSLEEQGV Q
Sbjct: 1 MATATYPPPPPYYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60
Query: 61 LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120
LYPK N+D+K ELRSLNRELQLHILEL+DVLV+RPSQYA+R+ +IS IFKNLHHLLNSL
Sbjct: 61 LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120
Query: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ 168
RPHQARATLIHI+ELQIQ+RKQAVEDIKRRREEAQR LK++ TL+GQ
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDGQ 168
>TAIR|locus:2831839 [details] [associations]
symbol:AT5G03500 species:3702 "Arabidopsis thaliana"
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016592 "mediator complex" evidence=IDA]
InterPro:IPR009244 Pfam:PF05983 EMBL:CP002688
GenomeReviews:BA000015_GR EMBL:AL162751 GO:GO:0016592 GO:GO:0001104
HOGENOM:HOG000241102 KO:K15148 ProtClustDB:CLSN2687549
PANTHER:PTHR21428 EMBL:AY075596 EMBL:AY097400 EMBL:AK317313
IPI:IPI00539977 PIR:T48375 RefSeq:NP_001078525.1
RefSeq:NP_001190215.1 RefSeq:NP_195970.2 UniGene:At.48976
ProteinModelPortal:Q9LZD7 SMR:Q9LZD7 IntAct:Q9LZD7 STRING:Q9LZD7
EnsemblPlants:AT5G03500.1 EnsemblPlants:AT5G03500.2
EnsemblPlants:AT5G03500.3 GeneID:831822 KEGG:ath:AT5G03500
TAIR:At5g03500 InParanoid:Q9LZD7 OMA:LLNEFRP PhylomeDB:Q9LZD7
Genevestigator:Q9LZD7 Uniprot:Q9LZD7
Length = 168
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 125/168 (74%), Positives = 142/168 (84%)
Query: 1 MATAAXXXXXXXXRLYKDYLQNPNSAXXXXXXIEGTYICFGGNYTTDDVLPSLEEQGVRQ 60
MATA RLYKD+ +N +SA IEGTY+CFGGNYTT+DVLPSLEEQGV Q
Sbjct: 1 MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60
Query: 61 LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120
LYPK N+D+KKELRSLNRELQLHILEL+DVLV+RPSQYA+R+ +IS IFKNLHHLLNSL
Sbjct: 61 LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120
Query: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ 168
RPHQARATLIHI+ELQIQ+RKQAVEDIKRRREEAQ LK++ TL+GQ
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDGQ 168
>DICTYBASE|DDB_G0269568 [details] [associations]
symbol:med7 "putative mediator complex subunit 7"
species:44689 "Dictyostelium discoideum" [GO:0016592 "mediator
complex" evidence=IEA;ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009244 Pfam:PF05983 dictyBase:DDB_G0269568
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0006366
GO:GO:0016592 GO:GO:0001104 eggNOG:NOG274591 KO:K15148
PANTHER:PTHR21428 HSSP:Q08278 RefSeq:XP_646076.1
ProteinModelPortal:Q55DQ5 EnsemblProtists:DDB0266857 GeneID:8617026
KEGG:ddi:DDB_G0269568 OMA:SIMNEQI ProtClustDB:CLSZ2729287
Uniprot:Q55DQ5
Length = 345
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 61/133 (45%), Positives = 87/133 (65%)
Query: 33 IEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVL 92
+ Y+ FG Y+T D+LPSL+E G +QLYPKG +I+ EL+ LNR + + L+L + L
Sbjct: 150 VGANYVQFGQTYSTVDMLPSLDESGAKQLYPKG-DIEPISELKKLNRSILFNYLQLLETL 208
Query: 93 VERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRRE 152
+E P Y ++EDISL+F N HHLLNS RPHQAR TL+ I+ QI+++ Q+ E IK+ +
Sbjct: 209 IENPKNYQSKIEDISLLFINFHHLLNSYRPHQARETLLSIMNEQIKQKNQSNESIKKALD 268
Query: 153 EAQRRLKESLGTL 165
+ L S L
Sbjct: 269 ICKESLMNSFKNL 281
>UNIPROTKB|F1MIJ0 [details] [associations]
symbol:HAVCR2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016592 "mediator complex" evidence=IEA] [GO:0001104
"RNA polymerase II transcription cofactor activity" evidence=IEA]
InterPro:IPR009244 Pfam:PF05983 GO:GO:0016592 GO:GO:0001104
PANTHER:PTHR21428 OMA:LLNEFRP UniGene:Bt.103465
GeneTree:ENSGT00530000064187 EMBL:DAAA02020788 IPI:IPI00823913
Ensembl:ENSBTAT00000018133 NextBio:20927880 Uniprot:F1MIJ0
Length = 233
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 49/136 (36%), Positives = 82/136 (60%)
Query: 33 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDV 91
I+ +Y+ FG + DD ++ LE QG+ +L+P D KKELR LN + ++ L+L D+
Sbjct: 38 IKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILINFLDLLDI 95
Query: 92 LVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKR 149
L+ P R ++ED+ L+F ++HHL+N RPHQAR TL ++E+Q ++R + E ++
Sbjct: 96 LIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQK 155
Query: 150 RREEAQRRLKESLGTL 165
E ++ L +L
Sbjct: 156 HLERVIEMIQNCLASL 171
>UNIPROTKB|Q3T123 [details] [associations]
symbol:MED7 "Mediator of RNA polymerase II transcription
subunit 7" species:9913 "Bos taurus" [GO:0016592 "mediator complex"
evidence=IEA] [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] InterPro:IPR009244 Pfam:PF05983
GO:GO:0016592 GO:GO:0001104 eggNOG:NOG274591 HOGENOM:HOG000241102
KO:K15148 PANTHER:PTHR21428 EMBL:BC102155 IPI:IPI00715357
RefSeq:NP_001073051.1 UniGene:Bt.103465 ProteinModelPortal:Q3T123
STRING:Q3T123 PRIDE:Q3T123 GeneID:509729 KEGG:bta:509729 CTD:9443
HOVERGEN:HBG002997 InParanoid:Q3T123 OrthoDB:EOG4N8R5S
NextBio:20869098 Uniprot:Q3T123
Length = 233
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 49/136 (36%), Positives = 82/136 (60%)
Query: 33 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDV 91
I+ +Y+ FG + DD ++ LE QG+ +L+P D KKELR LN + ++ L+L D+
Sbjct: 38 IKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILINFLDLLDI 95
Query: 92 LVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKR 149
L+ P R ++ED+ L+F ++HHL+N RPHQAR TL ++E+Q ++R + E ++
Sbjct: 96 LIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQK 155
Query: 150 RREEAQRRLKESLGTL 165
E ++ L +L
Sbjct: 156 HLERVIEMIQNCLASL 171
>UNIPROTKB|E2RK91 [details] [associations]
symbol:MED7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0016592 "mediator complex" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
InterPro:IPR009244 Pfam:PF05983 GO:GO:0005667 GO:GO:0016592
GO:GO:0001104 KO:K15148 PANTHER:PTHR21428 OMA:LLNEFRP CTD:9443
GeneTree:ENSGT00530000064187 EMBL:AAEX03003064
RefSeq:NP_001240828.1 UniGene:Cfa.1894 ProteinModelPortal:E2RK91
Ensembl:ENSCAFT00000027867 GeneID:100688348 KEGG:cfa:100688348
Uniprot:E2RK91
Length = 233
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 49/136 (36%), Positives = 82/136 (60%)
Query: 33 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDV 91
I+ +Y+ FG + DD ++ LE QG+ +L+P D KKELR LN + ++ L+L D+
Sbjct: 38 IKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILINFLDLLDI 95
Query: 92 LVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKR 149
L+ P R ++ED+ L+F ++HHL+N RPHQAR TL ++E+Q ++R + E ++
Sbjct: 96 LIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQK 155
Query: 150 RREEAQRRLKESLGTL 165
E ++ L +L
Sbjct: 156 HLERVIEMIQNCLASL 171
>UNIPROTKB|E5RIE8 [details] [associations]
symbol:MED7 "Mediator of RNA polymerase II transcription
subunit 7" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] InterPro:IPR009244 Pfam:PF05983
GO:GO:0016592 GO:GO:0001104 PANTHER:PTHR21428 HGNC:HGNC:2378
EMBL:AC010609 IPI:IPI00983293 ProteinModelPortal:E5RIE8 SMR:E5RIE8
Ensembl:ENST00000524289 ArrayExpress:E5RIE8 Bgee:E5RIE8
Uniprot:E5RIE8
Length = 195
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 49/136 (36%), Positives = 82/136 (60%)
Query: 33 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDV 91
I+ +Y+ FG + DD ++ LE QG+ +L+P D KKELR LN + ++ L+L D+
Sbjct: 38 IKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILINFLDLLDI 95
Query: 92 LVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKR 149
L+ P R ++ED+ L+F ++HHL+N RPHQAR TL ++E+Q ++R + E ++
Sbjct: 96 LIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQK 155
Query: 150 RREEAQRRLKESLGTL 165
E ++ L +L
Sbjct: 156 HLERVIEMIQNCLASL 171
>UNIPROTKB|O43513 [details] [associations]
symbol:MED7 "Mediator of RNA polymerase II transcription
subunit 7" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003713 "transcription coactivator activity"
evidence=TAS] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 InterPro:IPR009244 Pfam:PF05983
Reactome:REACT_111045 GO:GO:0006357 GO:GO:0005667 GO:GO:0003713
GO:GO:0006367 GO:GO:0016592 GO:GO:0001104 eggNOG:NOG274591
HOGENOM:HOG000241102 KO:K15148 PANTHER:PTHR21428 OMA:LLNEFRP
CTD:9443 HOVERGEN:HBG002997 OrthoDB:EOG4N8R5S EMBL:AF031383
EMBL:AF104251 EMBL:BC005250 IPI:IPI00003562 RefSeq:NP_001094286.1
RefSeq:NP_004261.1 UniGene:Hs.279902 UniGene:Hs.741479
ProteinModelPortal:O43513 SMR:O43513 IntAct:O43513
MINT:MINT-1457297 STRING:O43513 PhosphoSite:O43513 PaxDb:O43513
PeptideAtlas:O43513 PRIDE:O43513 DNASU:9443 Ensembl:ENST00000286317
Ensembl:ENST00000420343 GeneID:9443 KEGG:hsa:9443 UCSC:uc003lwm.4
GeneCards:GC05M156564 HGNC:HGNC:2378 MIM:605045 neXtProt:NX_O43513
PharmGKB:PA162395669 InParanoid:O43513 PhylomeDB:O43513
GenomeRNAi:9443 NextBio:35362 ArrayExpress:O43513 Bgee:O43513
CleanEx:HS_MED7 Genevestigator:O43513 GermOnline:ENSG00000155868
Uniprot:O43513
Length = 233
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 49/136 (36%), Positives = 82/136 (60%)
Query: 33 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDV 91
I+ +Y+ FG + DD ++ LE QG+ +L+P D KKELR LN + ++ L+L D+
Sbjct: 38 IKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILINFLDLLDI 95
Query: 92 LVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKR 149
L+ P R ++ED+ L+F ++HHL+N RPHQAR TL ++E+Q ++R + E ++
Sbjct: 96 LIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQK 155
Query: 150 RREEAQRRLKESLGTL 165
E ++ L +L
Sbjct: 156 HLERVIEMIQNCLASL 171
>UNIPROTKB|Q2F7Z4 [details] [associations]
symbol:MED7 "Mediator of RNA polymerase II transcription
subunit 7" species:9823 "Sus scrofa" [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] InterPro:IPR009244 Pfam:PF05983
GO:GO:0005667 GO:GO:0016592 GO:GO:0001104 eggNOG:NOG274591
HOGENOM:HOG000241102 KO:K15148 PANTHER:PTHR21428 OMA:LLNEFRP
CTD:9443 HOVERGEN:HBG002997 OrthoDB:EOG4N8R5S
GeneTree:ENSGT00530000064187 EMBL:DQ200861 EMBL:DQ200863
RefSeq:NP_001038080.1 UniGene:Ssc.7566 ProteinModelPortal:Q2F7Z4
STRING:Q2F7Z4 Ensembl:ENSSSCT00000018572 GeneID:733689
KEGG:ssc:733689 Uniprot:Q2F7Z4
Length = 233
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 49/136 (36%), Positives = 82/136 (60%)
Query: 33 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDV 91
I+ +Y+ FG + DD ++ LE QG+ +L+P D KKELR LN + ++ L+L D+
Sbjct: 38 IKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILINFLDLLDI 95
Query: 92 LVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKR 149
L+ P R ++ED+ L+F ++HHL+N RPHQAR TL ++E+Q ++R + E ++
Sbjct: 96 LIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQK 155
Query: 150 RREEAQRRLKESLGTL 165
E ++ L +L
Sbjct: 156 HLERVIEMIQNCLASL 171
>MGI|MGI:1913463 [details] [associations]
symbol:Med7 "mediator complex subunit 7" species:10090 "Mus
musculus" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0016592 "mediator
complex" evidence=IDA] [GO:0019827 "stem cell maintenance"
evidence=IMP] InterPro:IPR009244 Pfam:PF05983 MGI:MGI:1913463
GO:GO:0005667 Reactome:REACT_127416 GO:GO:0019827
Reactome:REACT_27166 GO:GO:0016592 GO:GO:0001104 EMBL:AL669948
eggNOG:NOG274591 HOGENOM:HOG000241102 KO:K15148 PANTHER:PTHR21428
OMA:LLNEFRP CTD:9443 HOVERGEN:HBG002997
GeneTree:ENSGT00530000064187 EMBL:AK004354 EMBL:AK010357
EMBL:AK012799 EMBL:AK144918 EMBL:AK147739 EMBL:AK167407
EMBL:BC011333 IPI:IPI00331242 RefSeq:NP_001098000.1
RefSeq:NP_001098026.1 RefSeq:NP_001098027.1 RefSeq:NP_079702.3
UniGene:Mm.24159 ProteinModelPortal:Q9CZB6 SMR:Q9CZB6 IntAct:Q9CZB6
STRING:Q9CZB6 PhosphoSite:Q9CZB6 PaxDb:Q9CZB6 PRIDE:Q9CZB6
Ensembl:ENSMUST00000020665 Ensembl:ENSMUST00000109232
Ensembl:ENSMUST00000170928 GeneID:66213 KEGG:mmu:66213
UCSC:uc007iok.2 InParanoid:Q9CZB6 ChiTaRS:MED7 NextBio:320983
Bgee:Q9CZB6 CleanEx:MM_MED7 Genevestigator:Q9CZB6
GermOnline:ENSMUSG00000020397 Uniprot:Q9CZB6
Length = 233
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 49/136 (36%), Positives = 82/136 (60%)
Query: 33 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDV 91
I+ +Y+ FG + DD ++ LE QG+ +L+P D KKELR LN + ++ L+L D+
Sbjct: 38 IKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILINFLDLLDI 95
Query: 92 LVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKR 149
L+ P R ++ED+ L+F ++HHL+N RPHQAR TL ++E+Q ++R + E ++
Sbjct: 96 LIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQK 155
Query: 150 RREEAQRRLKESLGTL 165
E ++ L +L
Sbjct: 156 HLERVIEMIQNCLASL 171
>RGD|6494481 [details] [associations]
symbol:LOC100911235 "mediator of RNA polymerase II transcription
subunit 7-like" species:10116 "Rattus norvegicus" [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0016592 "mediator complex" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] InterPro:IPR009244 Pfam:PF05983
RGD:6494481 GO:GO:0005667 EMBL:CH473948 GO:GO:0016592 GO:GO:0001104
KO:K15148 PANTHER:PTHR21428 OMA:LLNEFRP OrthoDB:EOG4N8R5S
GeneTree:ENSGT00530000064187 IPI:IPI00189434 RefSeq:XP_003750852.1
RefSeq:XP_003750853.1 RefSeq:XP_003750854.1 RefSeq:XP_003750855.1
RefSeq:XP_003752366.1 RefSeq:XP_003752367.1 RefSeq:XP_003752368.1
RefSeq:XP_003752369.1 Ensembl:ENSRNOT00000009238 GeneID:100911235
KEGG:rno:100911235 Uniprot:D4A7V2
Length = 233
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 49/136 (36%), Positives = 82/136 (60%)
Query: 33 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDV 91
I+ +Y+ FG + DD ++ LE QG+ +L+P D KKELR LN + ++ L+L D+
Sbjct: 38 IKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILINFLDLLDI 95
Query: 92 LVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKR 149
L+ P R ++ED+ L+F ++HHL+N RPHQAR TL ++E+Q ++R + E ++
Sbjct: 96 LIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQK 155
Query: 150 RREEAQRRLKESLGTL 165
E ++ L +L
Sbjct: 156 HLERVIEMIQNCLASL 171
>UNIPROTKB|E1C6N9 [details] [associations]
symbol:LOC100857575 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0016592 "mediator complex" evidence=IEA]
[GO:0019827 "stem cell maintenance" evidence=IEA]
InterPro:IPR009244 Pfam:PF05983 GO:GO:0005667 GO:GO:0016592
GO:GO:0001104 KO:K15148 PANTHER:PTHR21428 OMA:LLNEFRP
GeneTree:ENSGT00530000064187 EMBL:AADN02028683 IPI:IPI00597194
RefSeq:XP_003642105.1 RefSeq:XP_003642106.1
Ensembl:ENSGALT00000006159 GeneID:100857575 KEGG:gga:100857575
Uniprot:E1C6N9
Length = 230
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 48/136 (35%), Positives = 82/136 (60%)
Query: 33 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDV 91
++ +Y+ FG + DD ++ LE QG+ +L+P D KKELR LN + ++ L+L D+
Sbjct: 38 VKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILVNFLDLLDI 95
Query: 92 LVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKR 149
L+ P R ++ED+ L+F ++HHL+N RPHQAR TL ++E+Q ++R + E ++
Sbjct: 96 LIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQK 155
Query: 150 RREEAQRRLKESLGTL 165
E ++ L +L
Sbjct: 156 HLERVVEMIQNCLASL 171
>UNIPROTKB|G3X7Z8 [details] [associations]
symbol:HAVCR2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0016592 "mediator complex" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
InterPro:IPR007110 InterPro:IPR009244 Pfam:PF05983 PROSITE:PS50835
Gene3D:2.60.40.10 InterPro:IPR013783 InterPro:IPR003599
SMART:SM00409 GO:GO:0005667 InterPro:IPR013106 Pfam:PF07686
GO:GO:0016592 GO:GO:0001104 GeneTree:ENSGT00530000064187
EMBL:DAAA02020788 Ensembl:ENSBTAT00000049360 Uniprot:G3X7Z8
Length = 471
Score = 243 (90.6 bits), Expect = 5.5e-20, P = 5.5e-20
Identities = 49/136 (36%), Positives = 82/136 (60%)
Query: 33 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDV 91
I+ +Y+ FG + DD ++ LE QG+ +L+P D KKELR LN + ++ L+L D+
Sbjct: 38 IKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILINFLDLLDI 95
Query: 92 LVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKR 149
L+ P R ++ED+ L+F ++HHL+N RPHQAR TL ++E+Q ++R + E ++
Sbjct: 96 LIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQK 155
Query: 150 RREEAQRRLKESLGTL 165
E ++ L +L
Sbjct: 156 HLERVIEMIQNCLASL 171
>ZFIN|ZDB-GENE-030131-4823 [details] [associations]
symbol:med7 "mediator complex subunit 7"
species:7955 "Danio rerio" [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
[GO:0016592 "mediator complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR009244 Pfam:PF05983
ZFIN:ZDB-GENE-030131-4823 GO:GO:0016592 GO:GO:0001104
eggNOG:NOG274591 HOGENOM:HOG000241102 KO:K15148 PANTHER:PTHR21428
CTD:9443 HOVERGEN:HBG002997 OrthoDB:EOG4N8R5S HSSP:Q08278
EMBL:BC046018 IPI:IPI00859388 RefSeq:NP_956035.1 UniGene:Dr.80623
ProteinModelPortal:Q7ZV35 STRING:Q7ZV35 GeneID:326098
KEGG:dre:326098 InParanoid:Q7ZV35 NextBio:20809635
ArrayExpress:Q7ZV35 Uniprot:Q7ZV35
Length = 241
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 47/136 (34%), Positives = 82/136 (60%)
Query: 33 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDV 91
I +Y+ FG + DD ++ LE QG+ +L+P D K+EL+ LN + ++ L+L D+
Sbjct: 38 IRDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKRELKKLNMSILVNFLDLLDI 95
Query: 92 LVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKR 149
L++ P R ++ED+ L+F ++HHL+N RPHQAR TL ++E+Q ++R + E ++
Sbjct: 96 LIKSPGSIKREEKLEDLKLLFVHMHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQK 155
Query: 150 RREEAQRRLKESLGTL 165
E ++ L +L
Sbjct: 156 HLERVVEMIQGCLSSL 171
>FB|FBgn0051390 [details] [associations]
symbol:MED7 "Mediator complex subunit 7" species:7227
"Drosophila melanogaster" [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=ISS] [GO:0016592
"mediator complex" evidence=IEA;IC;ISS] [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=ISS;IMP] [GO:0005634
"nucleus" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IC;ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR009244
Pfam:PF05983 EMBL:AE014297 GO:GO:0006367 GO:GO:0016592
GO:GO:0001104 eggNOG:NOG274591 KO:K15148 PANTHER:PTHR21428
OMA:LLNEFRP CTD:9443 HSSP:Q08278 GeneTree:ENSGT00530000064187
EMBL:AF293979 EMBL:BT023304 EMBL:BT029406 RefSeq:NP_731500.1
UniGene:Dm.21312 ProteinModelPortal:Q9GYV9 SMR:Q9GYV9 STRING:Q9GYV9
PaxDb:Q9GYV9 PRIDE:Q9GYV9 EnsemblMetazoa:FBtr0082311 GeneID:41288
KEGG:dme:Dmel_CG31390 FlyBase:FBgn0051390 InParanoid:Q9GYV9
OrthoDB:EOG4PK0QX PhylomeDB:Q9GYV9 GenomeRNAi:41288 NextBio:823117
Bgee:Q9GYV9 Uniprot:Q9GYV9
Length = 220
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 52/130 (40%), Positives = 81/130 (62%)
Query: 37 YICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERP 96
Y FG Y D+++ SLE Q +++L P + D +KEL+ LN L ++ L+L D L+ P
Sbjct: 45 YSMFGIQYNNDEMIRSLESQNIKRLIPI--HFDRRKELKKLNHSLLVNFLDLIDFLILNP 102
Query: 97 SQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEA 154
R +++DISL+F N+HHLLN RPHQAR TL ++E+Q ++Q VE R ++
Sbjct: 103 DSPRRTEKIDDISLLFVNMHHLLNEFRPHQARETLRVMMEMQ---KRQRVETAARFQKHL 159
Query: 155 QRRLKESLGT 164
+R ++E + T
Sbjct: 160 ER-VREIVNT 168
>POMBASE|SPBC14F5.08 [details] [associations]
symbol:med7 "mediator complex subunit Med7" species:4896
"Schizosaccharomyces pombe" [GO:0005634 "nucleus" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IC] [GO:0016592 "mediator complex" evidence=IDA]
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IDA] InterPro:IPR009244 Pfam:PF05983 PomBase:SPBC14F5.08
EMBL:CU329671 GO:GO:0006357 GenomeReviews:CU329671_GR GO:GO:0016592
GO:GO:0001104 eggNOG:NOG274591 KO:K15148 PANTHER:PTHR21428
OrthoDB:EOG4DNJF0 EMBL:AB027928 PIR:T39454 RefSeq:NP_596734.1
ProteinModelPortal:O60104 SMR:O60104 IntAct:O60104 STRING:O60104
EnsemblFungi:SPBC14F5.08.1 GeneID:2539773 KEGG:spo:SPBC14F5.08
NextBio:20800923 Uniprot:O60104
Length = 376
Score = 179 (68.1 bits), Expect = 6.9e-19, Sum P(2) = 6.9e-19
Identities = 34/88 (38%), Positives = 56/88 (63%)
Query: 73 ELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHI 132
ELR L+R L L+ LEL ++ + P Q+ +VE+I ++ NLHHL+N RPHQ+R +LI +
Sbjct: 227 ELRFLSRSLMLNFLELLGIMAKAPEQFPSKVENIRVLLLNLHHLINDYRPHQSRESLIML 286
Query: 133 LELQIQRRKQAVEDIKRRREEAQRRLKE 160
LE Q++ + VE ++ + L++
Sbjct: 287 LEKQLKHEESQVELLRTHNRQMTETLEK 314
Score = 73 (30.8 bits), Expect = 6.9e-19, Sum P(2) = 6.9e-19
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 35 GTYICFGGNYTTDDVLPSLEEQGVRQLY 62
GTY FG + D+ +PSL+E G+ +LY
Sbjct: 72 GTYQMFGDTWRLDEAIPSLKEFGIPELY 99
>SGD|S000005495 [details] [associations]
symbol:MED7 "Subunit of the RNA polymerase II mediator
complex" species:4932 "Saccharomyces cerevisiae" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0070847 "core mediator complex"
evidence=IDA] [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0003674 "molecular_function" evidence=ND]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR009244
Pfam:PF05983 SGD:S000005495 EMBL:BK006948 EMBL:X95465 GO:GO:0045944
GO:GO:0000122 GO:GO:0016592 GO:GO:0001104 GO:GO:0070847 PDB:1YKE
PDB:1YKH PDBsum:1YKE PDBsum:1YKH PDB:3FBI PDB:3FBN PDBsum:3FBI
PDBsum:3FBN eggNOG:NOG274591 KO:K15148 PANTHER:PTHR21428
GeneTree:ENSGT00530000064187 HOGENOM:HOG000000771 OMA:LNEYRPH
OrthoDB:EOG4DNJF0 EMBL:Z74877 EMBL:AY692889 PIR:S66832
RefSeq:NP_014506.1 ProteinModelPortal:Q08278 SMR:Q08278
DIP:DIP-1435N IntAct:Q08278 MINT:MINT-390686 STRING:Q08278
PaxDb:Q08278 PeptideAtlas:Q08278 EnsemblFungi:YOL135C GeneID:853985
KEGG:sce:YOL135C CYGD:YOL135c EvolutionaryTrace:Q08278
NextBio:975458 Genevestigator:Q08278 GermOnline:YOL135C
Uniprot:Q08278
Length = 222
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 53/135 (39%), Positives = 76/135 (56%)
Query: 37 YICFGGNYTTDDVLPSLEEQGVRQLYPKGP-----NIDFK-KELRSLNRELQLHILELSD 90
Y FG + D LP LE G+ QLY K N +K +ELR L + L L+ LEL
Sbjct: 76 YRAFGSIWQVKDQLPDLESMGLTQLYKKSTENESTNYQYKIQELRKLLKSLLLNYLELIG 135
Query: 91 VLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRR 150
VL P Y R+VE+I I N+HHLLN RPHQ+R +LI +LE Q++ ++ + +I++
Sbjct: 136 VLSINPDMYERKVENIRTILVNIHHLLNEYRPHQSRESLIMLLEEQLEYKRGEIREIEQV 195
Query: 151 REEAQRRLKESLGTL 165
++ +L TL
Sbjct: 196 CKQVHDKLTSIQDTL 210
>ASPGD|ASPL0000049115 [details] [associations]
symbol:AN2123 species:162425 "Emericella nidulans"
[GO:0070847 "core mediator complex" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR009244 Pfam:PF05983 EMBL:BN001307 EMBL:AACD01000032
GO:GO:0016592 GO:GO:0001104 eggNOG:NOG274591 KO:K15148
PANTHER:PTHR21428 HSSP:Q08278 RefSeq:XP_659727.1
ProteinModelPortal:Q5BBF7 SMR:Q5BBF7 STRING:Q5BBF7
EnsemblFungi:CADANIAT00008797 GeneID:2875636 KEGG:ani:AN2123.2
HOGENOM:HOG000000771 OMA:LNEYRPH OrthoDB:EOG4DNJF0 Uniprot:Q5BBF7
Length = 259
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 52/138 (37%), Positives = 71/138 (51%)
Query: 37 YICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKE--------------LRSLNRELQ 82
Y FG LPSLEEQG+ QLYP P D K L +++ L
Sbjct: 77 YSIFGEVQNLSTALPSLEEQGITQLYPSSPKPDTKSGDSSQPAQPLNHAYYLLKISKSLL 136
Query: 83 LHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQ 142
L+ LE +L P Q+ +VEDI +F N HHLLN RPHQAR +LI ++E Q+ R K
Sbjct: 137 LNFLEFVGILSVAPEQFEPKVEDIRNLFINAHHLLNLYRPHQARESLIMMMEAQLARTKD 196
Query: 143 AVEDIKRRREEAQRRLKE 160
++ + + +EE L +
Sbjct: 197 EIQQMDKLKEEVNAVLDQ 214
>CGD|CAL0003950 [details] [associations]
symbol:orf19.232 species:5476 "Candida albicans" [GO:0070847
"core mediator complex" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR009244
Pfam:PF05983 CGD:CAL0003950 EMBL:AACQ01000027 EMBL:AACQ01000026
GO:GO:0016592 GO:GO:0001104 KO:K15148 PANTHER:PTHR21428 HSSP:Q08278
RefSeq:XP_719931.1 RefSeq:XP_720061.1 ProteinModelPortal:Q5AEN6
SMR:Q5AEN6 STRING:Q5AEN6 GeneID:3638283 GeneID:3638344
KEGG:cal:CaO19.232 KEGG:cal:CaO19.7862 eggNOG:NOG307085
Uniprot:Q5AEN6
Length = 304
Score = 157 (60.3 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
Identities = 33/88 (37%), Positives = 56/88 (63%)
Query: 72 KELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIH 131
KEL L L L+ LEL +L P +Y +++ DI+LI N++HLLN+ RPHQ+R +LI
Sbjct: 166 KELHKLMDSLLLNFLELIGILSIDPIKYDKKIHDINLILININHLLNTYRPHQSRESLIM 225
Query: 132 ILELQIQRRKQAVEDIKRRREEAQRRLK 159
+L+ QI + ++ I ++ + + ++K
Sbjct: 226 LLKNQIDYKFLEIDQINKKCLDIKSKIK 253
Score = 43 (20.2 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 34 EGT-YICFGGNYTTDDVLPSLEEQGVRQLY 62
EG Y +G + +D LP+L++ QLY
Sbjct: 86 EGPQYRGYGNIWLFEDKLPNLKDSQWEQLY 115
>WB|WBGene00002324 [details] [associations]
symbol:let-49 species:6239 "Caenorhabditis elegans"
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016592 "mediator
complex" evidence=IEA] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IGI;IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR009244 Pfam:PF05983 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0008406 GO:GO:0010171 GO:GO:0040011
GO:GO:0040035 GO:GO:0007281 GO:GO:0016592 GO:GO:0001104
GO:GO:0001703 eggNOG:NOG274591 KO:K15148 OMA:EYASAYT
PANTHER:PTHR21428 EMBL:AL032653 PIR:T27166 RefSeq:NP_493585.1
RefSeq:NP_493586.1 HSSP:Q08278 ProteinModelPortal:Q95Q17 SMR:Q95Q17
IntAct:Q95Q17 STRING:Q95Q17 PaxDb:Q95Q17 PRIDE:Q95Q17
EnsemblMetazoa:Y54E5B.3b GeneID:173353 KEGG:cel:CELE_Y54E5B.3
UCSC:Y54E5B.3b CTD:173353 WormBase:Y54E5B.3a WormBase:Y54E5B.3b
GeneTree:ENSGT00530000064187 HOGENOM:HOG000113548 InParanoid:Q95Q17
NextBio:879289 Uniprot:Q95Q17
Length = 251
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 40/132 (30%), Positives = 70/132 (53%)
Query: 40 FGGNYTT-DDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQ 98
+G Y DDV+ L+ GV +LY K N ++K E++ LNR + +L ++L+ P
Sbjct: 46 YGEEYRLEDDVIAPLKNAGVAELY-KNKN-NWKTEMKKLNRSAIVAFFDLVEILIRAPDH 103
Query: 99 YAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQR 156
R ++ D+ IF N+HHL+N RP QAR ++ + E QI+ +D K+ + +
Sbjct: 104 PMREEKMVDLHTIFINMHHLINEFRPVQARDSVRILQERQIEELSDICKDFKKYLRDGRE 163
Query: 157 RLKESLGTLEGQ 168
+ + + G+
Sbjct: 164 VVDDQFQMIRGK 175
>UNIPROTKB|Q95Q17 [details] [associations]
symbol:let-49 "Mediator of RNA polymerase II transcription
subunit 7" species:6239 "Caenorhabditis elegans" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR009244 Pfam:PF05983
GO:GO:0009792 GO:GO:0002009 GO:GO:0040010 GO:GO:0008406
GO:GO:0010171 GO:GO:0040011 GO:GO:0040035 GO:GO:0007281
GO:GO:0016592 GO:GO:0001104 GO:GO:0001703 eggNOG:NOG274591
KO:K15148 OMA:EYASAYT PANTHER:PTHR21428 EMBL:AL032653 PIR:T27166
RefSeq:NP_493585.1 RefSeq:NP_493586.1 HSSP:Q08278
ProteinModelPortal:Q95Q17 SMR:Q95Q17 IntAct:Q95Q17 STRING:Q95Q17
PaxDb:Q95Q17 PRIDE:Q95Q17 EnsemblMetazoa:Y54E5B.3b GeneID:173353
KEGG:cel:CELE_Y54E5B.3 UCSC:Y54E5B.3b CTD:173353 WormBase:Y54E5B.3a
WormBase:Y54E5B.3b GeneTree:ENSGT00530000064187
HOGENOM:HOG000113548 InParanoid:Q95Q17 NextBio:879289
Uniprot:Q95Q17
Length = 251
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 40/132 (30%), Positives = 70/132 (53%)
Query: 40 FGGNYTT-DDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQ 98
+G Y DDV+ L+ GV +LY K N ++K E++ LNR + +L ++L+ P
Sbjct: 46 YGEEYRLEDDVIAPLKNAGVAELY-KNKN-NWKTEMKKLNRSAIVAFFDLVEILIRAPDH 103
Query: 99 YAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQR 156
R ++ D+ IF N+HHL+N RP QAR ++ + E QI+ +D K+ + +
Sbjct: 104 PMREEKMVDLHTIFINMHHLINEFRPVQARDSVRILQERQIEELSDICKDFKKYLRDGRE 163
Query: 157 RLKESLGTLEGQ 168
+ + + G+
Sbjct: 164 VVDDQFQMIRGK 175
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 168 154 0.00088 105 3 11 22 0.49 31
30 0.41 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 535 (57 KB)
Total size of DFA: 118 KB (2078 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.47u 0.14s 22.61t Elapsed: 00:00:01
Total cpu time: 22.47u 0.14s 22.61t Elapsed: 00:00:01
Start: Fri May 10 06:29:51 2013 End: Fri May 10 06:29:52 2013