BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030977
         (168 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YKE|A Chain A, Structure Of The Mediator Med7MED21 SUBCOMPLEX
 pdb|1YKE|C Chain C, Structure Of The Mediator Med7MED21 SUBCOMPLEX
 pdb|1YKH|A Chain A, Structure Of The Mediator Med7MED21 (MED7SRB7) SUBCOMPLEX
          Length = 108

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 42/63 (66%)

Query: 87  ELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVED 146
           EL  VL   P  Y R+VE+I  I  N+HHLLN  RPHQ+R +LI +LE Q++ ++  + +
Sbjct: 35  ELIGVLSINPDMYERKVENIRTILVNIHHLLNEYRPHQSRESLIMLLEEQLEYKRGEIRE 94

Query: 147 IKR 149
           I++
Sbjct: 95  IEQ 97


>pdb|1VGP|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
           Sulfolbus Tokodaii Strain7
          Length = 373

 Score = 28.1 bits (61), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 41  GGNYTTDDVLPSLEEQGVRQLYPKG--PNIDF 70
           G  YT   +   +EE G++ L PKG  PN+DF
Sbjct: 280 GEIYTLYQIAEKVEEIGIKYLGPKGIYPNVDF 311


>pdb|1PRX|A Chain A, Horf6 A Novel Human Peroxidase Enzyme
 pdb|1PRX|B Chain B, Horf6 A Novel Human Peroxidase Enzyme
          Length = 224

 Score = 26.6 bits (57), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)

Query: 49  VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQ 82
           VLP++ E+  ++L+PKG    F KEL S  + L+
Sbjct: 189 VLPTIPEEEAKKLFPKG---VFTKELPSGKKYLR 219


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,365,261
Number of Sequences: 62578
Number of extensions: 163186
Number of successful extensions: 561
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 15
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)