BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030977
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LZD7|MED7B_ARATH Mediator of RNA polymerase II transcription subunit 7b
OS=Arabidopsis thaliana GN=MED7B PE=1 SV=1
Length = 168
Score = 268 bits (685), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 139/168 (82%), Positives = 156/168 (92%)
Query: 1 MATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQ 60
MATA YPPPPPYYRLYKD+ +N +SAPEPPPPIEGTY+CFGGNYTT+DVLPSLEEQGV Q
Sbjct: 1 MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60
Query: 61 LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120
LYPK N+D+KKELRSLNRELQLHILEL+DVLV+RPSQYA+R+ +IS IFKNLHHLLNSL
Sbjct: 61 LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120
Query: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ 168
RPHQARATLIHI+ELQIQ+RKQAVEDIKRRREEAQ LK++ TL+GQ
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDGQ 168
>sp|Q9LYW3|MED7A_ARATH Mediator of RNA polymerase II transcription subunit 7a
OS=Arabidopsis thaliana GN=MED7A PE=1 SV=1
Length = 168
Score = 259 bits (661), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 142/168 (84%), Positives = 157/168 (93%)
Query: 1 MATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQ 60
MATA YPPPPPYYRLYKDY +NPNSAPEPPPPIEGTY+CFGGNYTT+DVLPSLEEQGV Q
Sbjct: 1 MATATYPPPPPYYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60
Query: 61 LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120
LYPK N+D+K ELRSLNRELQLHILEL+DVLV+RPSQYA+R+ +IS IFKNLHHLLNSL
Sbjct: 61 LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120
Query: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ 168
RPHQARATLIHI+ELQIQ+RKQAVEDIKRRREEAQR LK++ TL+GQ
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDGQ 168
>sp|Q17MI0|MED7_AEDAE Mediator of RNA polymerase II transcription subunit 7 OS=Aedes
aegypti GN=MED7 PE=3 SV=1
Length = 219
Score = 126 bits (317), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 109/169 (64%), Gaps = 6/169 (3%)
Query: 1 MATAAYP-PPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTT-DDVLPSLEEQGV 58
+ +++P PP YY+LY D N AP+PP PI+GTY FG ++T D+++ LE QG
Sbjct: 7 IQVSSFPLPPAQYYKLYTDENVRNNRAPKPPAPIQGTYQMFGQQFSTEDNIIRPLEAQGF 66
Query: 59 RQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPS--QYARRVEDISLIFKNLHHL 116
++LYP+ + D +KEL+ LN L ++ L+L D+LV P Q A ++ED++L+F ++HHL
Sbjct: 67 KRLYPQ--HFDRRKELKKLNHSLLVNFLDLIDLLVHNPDSPQRAEKIEDLNLLFVHIHHL 124
Query: 117 LNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 165
LN RPHQAR TL ++ELQ ++R++ + + E+ + + + +L
Sbjct: 125 LNEFRPHQARETLRVMMELQKRQRQETTQRFQNHLEKVREMVNNAFASL 173
>sp|Q55DQ5|MED7_DICDI Putative mediator of RNA polymerase II transcription subunit 7
OS=Dictyostelium discoideum GN=med7 PE=3 SV=1
Length = 345
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 87/133 (65%), Gaps = 1/133 (0%)
Query: 33 IEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVL 92
+ Y+ FG Y+T D+LPSL+E G +QLYPKG +I+ EL+ LNR + + L+L + L
Sbjct: 150 VGANYVQFGQTYSTVDMLPSLDESGAKQLYPKG-DIEPISELKKLNRSILFNYLQLLETL 208
Query: 93 VERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRRE 152
+E P Y ++EDISL+F N HHLLNS RPHQAR TL+ I+ QI+++ Q+ E IK+ +
Sbjct: 209 IENPKNYQSKIEDISLLFINFHHLLNSYRPHQARETLLSIMNEQIKQKNQSNESIKKALD 268
Query: 153 EAQRRLKESLGTL 165
+ L S L
Sbjct: 269 ICKESLMNSFKNL 281
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 4 AAYPPPPPYYRLYKDY 19
+A+PPPPP+Y+LY +Y
Sbjct: 32 SAFPPPPPFYKLYLNY 47
>sp|Q7PR68|MED7_ANOGA Mediator of RNA polymerase II transcription subunit 7 OS=Anopheles
gambiae GN=MED7 PE=3 SV=2
Length = 219
Score = 117 bits (292), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 99/161 (61%), Gaps = 5/161 (3%)
Query: 8 PPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGP 66
PP Y LY D N AP+PP PI+ Y FG ++ DD ++ LE QG ++LYP+
Sbjct: 15 PPAQYINLYTDENIRKNRAPKPPAPIQDAYTMFGSPFSNDDNIIRPLESQGFKRLYPQ-- 72
Query: 67 NIDFKKELRSLNRELQLHILELSDVLVERPS--QYARRVEDISLIFKNLHHLLNSLRPHQ 124
+ D +KEL+ LN L ++ L+L D+LV P + A ++ED+SL+F ++HHLLN RPHQ
Sbjct: 73 HFDRRKELKKLNHSLLVNFLDLIDLLVHYPDSPRRAEKIEDLSLLFVHIHHLLNEFRPHQ 132
Query: 125 ARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 165
AR TL ++ELQ ++R + + + E+ + +K + +L
Sbjct: 133 ARETLRVMMELQKRQRIETAQRFQNHLEKVREMVKNAFASL 173
>sp|Q9CZB6|MED7_MOUSE Mediator of RNA polymerase II transcription subunit 7 OS=Mus
musculus GN=Med7 PE=2 SV=2
Length = 233
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 99/167 (59%), Gaps = 6/167 (3%)
Query: 3 TAAYPPPP-PYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDD-VLPSLEEQGVRQ 60
+A PPPP Y + Y D AP+PPPPI+ +Y+ FG + DD ++ LE QG+ +
Sbjct: 7 VSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPLESQGIER 66
Query: 61 LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLN 118
L+P D KKELR LN + ++ L+L D+L+ P R ++ED+ L+F ++HHL+N
Sbjct: 67 LHPM--QFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLIN 124
Query: 119 SLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 165
RPHQAR TL ++E+Q ++R + E ++ E ++ L +L
Sbjct: 125 EYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASL 171
>sp|Q2F7Z4|MED7_PIG Mediator of RNA polymerase II transcription subunit 7 OS=Sus scrofa
GN=MED7 PE=2 SV=2
Length = 233
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 99/167 (59%), Gaps = 6/167 (3%)
Query: 3 TAAYPPPP-PYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDD-VLPSLEEQGVRQ 60
+A PPPP Y + Y D AP+PPPPI+ +Y+ FG + DD ++ LE QG+ +
Sbjct: 7 VSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPLESQGIER 66
Query: 61 LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLN 118
L+P D KKELR LN + ++ L+L D+L+ P R ++ED+ L+F ++HHL+N
Sbjct: 67 LHPM--QFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLIN 124
Query: 119 SLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 165
RPHQAR TL ++E+Q ++R + E ++ E ++ L +L
Sbjct: 125 EYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASL 171
>sp|Q3T123|MED7_BOVIN Mediator of RNA polymerase II transcription subunit 7 OS=Bos taurus
GN=MED7 PE=2 SV=1
Length = 233
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 99/167 (59%), Gaps = 6/167 (3%)
Query: 3 TAAYPPPP-PYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDD-VLPSLEEQGVRQ 60
+A PPPP Y + Y D AP+PPPPI+ +Y+ FG + DD ++ LE QG+ +
Sbjct: 7 VSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPLESQGIER 66
Query: 61 LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLN 118
L+P D KKELR LN + ++ L+L D+L+ P R ++ED+ L+F ++HHL+N
Sbjct: 67 LHPM--QFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLIN 124
Query: 119 SLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 165
RPHQAR TL ++E+Q ++R + E ++ E ++ L +L
Sbjct: 125 EYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASL 171
>sp|O43513|MED7_HUMAN Mediator of RNA polymerase II transcription subunit 7 OS=Homo
sapiens GN=MED7 PE=1 SV=1
Length = 233
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 99/167 (59%), Gaps = 6/167 (3%)
Query: 3 TAAYPPPP-PYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDD-VLPSLEEQGVRQ 60
+A PPPP Y + Y D AP+PPPPI+ +Y+ FG + DD ++ LE QG+ +
Sbjct: 7 VSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPLESQGIER 66
Query: 61 LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLN 118
L+P D KKELR LN + ++ L+L D+L+ P R ++ED+ L+F ++HHL+N
Sbjct: 67 LHPM--QFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLIN 124
Query: 119 SLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 165
RPHQAR TL ++E+Q ++R + E ++ E ++ L +L
Sbjct: 125 EYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASL 171
>sp|Q7ZV35|MED7_DANRE Mediator of RNA polymerase II transcription subunit 7 OS=Danio
rerio GN=med7 PE=2 SV=1
Length = 241
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 99/167 (59%), Gaps = 6/167 (3%)
Query: 3 TAAYPPPP-PYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDD-VLPSLEEQGVRQ 60
+A PPPP Y + Y D AP+PPPPI +Y+ FG + DD ++ LE QG+ +
Sbjct: 7 VSALPPPPMQYIKEYTDENVRKGLAPKPPPPIRDSYMMFGNQFQCDDLIIRPLESQGIER 66
Query: 61 LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLN 118
L+P D K+EL+ LN + ++ L+L D+L++ P R ++ED+ L+F ++HHL+N
Sbjct: 67 LHPM--QFDHKRELKKLNMSILVNFLDLLDILIKSPGSIKREEKLEDLKLLFVHMHHLIN 124
Query: 119 SLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 165
RPHQAR TL ++E+Q ++R + E ++ E ++ L +L
Sbjct: 125 EYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVVEMIQGCLSSL 171
>sp|Q6GPR9|MED7B_XENLA Mediator of RNA polymerase II transcription subunit 7-B OS=Xenopus
laevis GN=med7-b PE=2 SV=1
Length = 228
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 95/167 (56%), Gaps = 6/167 (3%)
Query: 3 TAAYP-PPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDD-VLPSLEEQGVRQ 60
+A P PP Y + Y D AP+PP PI +Y+ FG + DD ++ LE QG+ +
Sbjct: 7 VSALPIPPMQYIKEYTDENIRKGLAPKPPLPINDSYMMFGNQFQCDDLIIRPLETQGIER 66
Query: 61 LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLN 118
L+P D KKELR L + ++ L++ D+L+ P R ++EDI L+F ++HHL+N
Sbjct: 67 LHPV--QFDHKKELRKLLMSILVNFLDMLDILIRSPGSIRREEKLEDIKLLFVHMHHLIN 124
Query: 119 SLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 165
RPHQAR TL ++E+Q ++R + E ++ E ++ L +L
Sbjct: 125 EYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVVEMIQNCLASL 171
>sp|Q3B8I4|MED7A_XENLA Mediator of RNA polymerase II transcription subunit 7-A OS=Xenopus
laevis GN=med7-a PE=2 SV=1
Length = 228
Score = 103 bits (257), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 97/167 (58%), Gaps = 6/167 (3%)
Query: 3 TAAYP-PPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDD-VLPSLEEQGVRQ 60
+A P PP Y + Y D + AP+PP PI+ +Y+ FG + DD ++ LE QG+ +
Sbjct: 7 VSALPIPPMQYIKEYTDENIRKSLAPKPPVPIKDSYMMFGNQFQCDDLIIRPLETQGIER 66
Query: 61 LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLN 118
L+P D KKELR L + ++ L++ D+L+ P R ++ED+ L+F ++HHL+N
Sbjct: 67 LHPV--QFDHKKELRKLLMSILVNFLDMLDILIRSPGSIRREEKLEDLKLLFVHMHHLIN 124
Query: 119 SLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 165
RPHQAR TL ++E+Q ++R + E ++ E ++ L +L
Sbjct: 125 EYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVVEMIQNCLASL 171
>sp|Q5BJ48|MED7_XENTR Mediator of RNA polymerase II transcription subunit 7 OS=Xenopus
tropicalis GN=med7 PE=2 SV=1
Length = 229
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 96/167 (57%), Gaps = 6/167 (3%)
Query: 3 TAAYP-PPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDD-VLPSLEEQGVRQ 60
+A P PP Y + Y D AP+PP PI+ +Y+ FG + DD ++ LE QG+ +
Sbjct: 7 VSALPIPPMQYIKEYTDENIRKGLAPKPPLPIKDSYMMFGNQFQCDDLIIRPLETQGIER 66
Query: 61 LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLN 118
L+P D KKELR L + ++ L++ D+L+ P R ++ED+ L+F ++HHL+N
Sbjct: 67 LHPM--QFDHKKELRKLLMSILVNFLDMLDILIRSPGSIRREEKLEDLKLLFVHMHHLIN 124
Query: 119 SLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 165
RPHQAR TL ++E+Q ++R + E ++ E ++ L +L
Sbjct: 125 EYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVVEMIQNCLASL 171
>sp|Q6FVI8|MED7_CANGA Mediator of RNA polymerase II transcription subunit 7 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=MED7 PE=3 SV=1
Length = 230
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 80/140 (57%), Gaps = 8/140 (5%)
Query: 29 PPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPN-----IDFK---KELRSLNRE 80
PP P G+Y FG + D LP LE G+ QLY K D++ KELR L+
Sbjct: 58 PPMPSSGSYRAFGSVWQIKDHLPDLETMGITQLYKKTSEGEAEVTDYQYKIKELRRLSYS 117
Query: 81 LQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRR 140
L L+ +EL VL P Y +VE+I I N+HHLLN RPHQ+R +LI +LE Q++ +
Sbjct: 118 LLLNFVELVGVLSVNPELYESKVENIRTILVNIHHLLNEYRPHQSRESLIMLLEEQLEHK 177
Query: 141 KQAVEDIKRRREEAQRRLKE 160
KQ V +I+ ++ +LK+
Sbjct: 178 KQEVANIELVCQQVTEKLKQ 197
>sp|Q9GYV9|MED7_DROME Mediator of RNA polymerase II transcription subunit 7 OS=Drosophila
melanogaster GN=MED7 PE=1 SV=1
Length = 220
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 81/131 (61%), Gaps = 8/131 (6%)
Query: 36 TYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVER 95
Y FG Y D+++ SLE Q +++L P + D +KEL+ LN L ++ L+L D L+
Sbjct: 44 VYSMFGIQYNNDEMIRSLESQNIKRLIP--IHFDRRKELKKLNHSLLVNFLDLIDFLILN 101
Query: 96 PSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREE 153
P R +++DISL+F N+HHLLN RPHQAR TL ++E+Q ++Q VE R ++
Sbjct: 102 PDSPRRTEKIDDISLLFVNMHHLLNEFRPHQARETLRVMMEMQ---KRQRVETAARFQKH 158
Query: 154 AQRRLKESLGT 164
+ R++E + T
Sbjct: 159 LE-RVREIVNT 168
>sp|Q5BBF7|MED7_EMENI Mediator of RNA polymerase II transcription subunit 7 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=med7 PE=3 SV=1
Length = 259
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 37 YICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRS-----LNR---------ELQ 82
Y FG LPSLEEQG+ QLYP P D K S LN L
Sbjct: 77 YSIFGEVQNLSTALPSLEEQGITQLYPSSPKPDTKSGDSSQPAQPLNHAYYLLKISKSLL 136
Query: 83 LHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQ 142
L+ LE +L P Q+ +VEDI +F N HHLLN RPHQAR +LI ++E Q+ R K
Sbjct: 137 LNFLEFVGILSVAPEQFEPKVEDIRNLFINAHHLLNLYRPHQARESLIMMMEAQLARTKD 196
Query: 143 AVEDIKRRREEAQRRLKE 160
++ + + +EE L +
Sbjct: 197 EIQQMDKLKEEVNAVLDQ 214
>sp|Q2UHU3|MED7_ASPOR Mediator of RNA polymerase II transcription subunit 7
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=med7 PE=3 SV=1
Length = 261
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 14/143 (9%)
Query: 32 PIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRS-----LNR------- 79
P G Y FG + LPSL++QG+ QLYP P D +E S LN
Sbjct: 74 PKSGHYSVFGELQSLSTALPSLQDQGITQLYPSPPTGDADREQPSEPSQPLNHAYYLLKI 133
Query: 80 --ELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQI 137
L L+ LE +L P Q+ +VED+ +F N HHLLN RPHQAR +LI ++E Q+
Sbjct: 134 SKSLLLNFLEFVGILSVAPEQFESKVEDLRNLFINAHHLLNLYRPHQARESLILMMEEQL 193
Query: 138 QRRKQAVEDIKRRREEAQRRLKE 160
R ++ ++ + + +EE L++
Sbjct: 194 SRTREEIQQMDKLKEEITGALEQ 216
>sp|A3LZW1|MED7_PICST Mediator of RNA polymerase II transcription subunit 7
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=MED7 PE=3 SV=2
Length = 257
Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 5/135 (3%)
Query: 29 PPPPIEGT-YICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFK----KELRSLNRELQL 83
PP P GT Y +G ++ +D LPSL+ QLY KEL L L L
Sbjct: 78 PPQPPSGTHYRGYGNIWSFEDKLPSLKSANWEQLYKDDDESITSETKIKELHKLMDSLLL 137
Query: 84 HILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQA 143
+ LEL + PSQY +++DISLI N++HLLN+ RPHQ+R +LI +L QI ++ +
Sbjct: 138 NFLELIGLASIDPSQYESKIKDISLILININHLLNTYRPHQSRESLIMLLRKQIDAKRAS 197
Query: 144 VEDIKRRREEAQRRL 158
+ +++ E +++L
Sbjct: 198 INQVEKVCSEVKQKL 212
>sp|A1CT75|MED7_ASPCL Mediator of RNA polymerase II transcription subunit 7
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=med7 PE=3 SV=1
Length = 260
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 13/138 (9%)
Query: 29 PPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQ------ 82
P P +G Y FG + LPSL+EQG+ QLYP P ++ +R
Sbjct: 72 PEIPTKGHYSVFGELQSLSTALPSLQEQGIEQLYPSPPTETDREAPSQPSRPFNHAYYLL 131
Query: 83 -------LHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILEL 135
L+ LE VL P Q+ +VED+ +F N HHLLN RPHQAR +LI ++E
Sbjct: 132 KISKSLLLNFLEFVGVLSVAPEQFQAKVEDLRNLFINAHHLLNLYRPHQARESLIMMMEE 191
Query: 136 QIQRRKQAVEDIKRRREE 153
Q++R ++ +E + + E
Sbjct: 192 QLKRSREEIEQMDKLHTE 209
>sp|Q95Q17|MED7_CAEEL Mediator of RNA polymerase II transcription subunit 7
OS=Caenorhabditis elegans GN=let-49 PE=1 SV=1
Length = 251
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 6/170 (3%)
Query: 2 ATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNY-TTDDVLPSLEEQGVRQ 60
+ +P PP Y Y N SAP PP P+ + +G Y DDV+ L+ GV +
Sbjct: 9 TVSPFPNPPEYASAYTSDRINNGSAPPPPHPL-TEFKVYGEEYRLEDDVIAPLKNAGVAE 67
Query: 61 LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLN 118
LY N +K E++ LNR + +L ++L+ P R ++ D+ IF N+HHL+N
Sbjct: 68 LYKNKNN--WKTEMKKLNRSAIVAFFDLVEILIRAPDHPMREEKMVDLHTIFINMHHLIN 125
Query: 119 SLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ 168
RP QAR ++ + E QI+ +D K+ + + + + + G+
Sbjct: 126 EFRPVQARDSVRILQERQIEELSDICKDFKKYLRDGREVVDDQFQMIRGK 175
>sp|Q6CE96|MED7_YARLI Mediator of RNA polymerase II transcription subunit 7 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MED7 PE=3 SV=1
Length = 235
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 38/177 (21%)
Query: 4 AAYPPPPPYYRLY--------KDYLQNPNS----AP-----EPPPPIEGTYICFGGNYTT 46
+ YPPPP Y R + KD + NS AP P PP G Y FG +
Sbjct: 13 SVYPPPPWYSRYFTDENVAKVKDLQSSDNSQLLEAPLKYLTPPSPPEAGAYHNFGDVWQV 72
Query: 47 DDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHI--------------LELSDVL 92
+D L +LE+ G+ Q+Y +R +E + +EL+ ++
Sbjct: 73 NDKLATLEDLGITQVYDGAA-------IRGEGQESGARVLELKKLTKSLLLAFVELTGIM 125
Query: 93 VERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKR 149
P Q+ + E + ++ N+HH+LN RPHQAR +L+ +++ QI +KQ VE+I++
Sbjct: 126 GVSPEQFPAKFEHVRVLLINIHHILNEYRPHQARESLVTLMQQQINDKKQHVENIRQ 182
>sp|Q0CK31|MED7_ASPTN Mediator of RNA polymerase II transcription subunit 7
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=med7 PE=3 SV=1
Length = 259
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 13/138 (9%)
Query: 29 PPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQ------ 82
P P EG Y FG + LPSL++QG+ QLYP P + ++ ++ L
Sbjct: 72 PEVPTEGHYSVFGELQSLSTALPSLKDQGIEQLYPSSPAAESGRDTSEPSKPLNHAYYLL 131
Query: 83 -------LHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILEL 135
L+ LE VL P Q+ +V D+ +F N HHLLN RPHQAR +LI ++E
Sbjct: 132 KISKSLLLNFLEFVGVLSICPEQFESKVNDLRNLFINAHHLLNLYRPHQARESLIMMMEE 191
Query: 136 QIQRRKQAVEDIKRRREE 153
Q+ + ++ ++ + + + E
Sbjct: 192 QLSQSREEIQQMDKLKAE 209
>sp|Q6CP69|MED7_KLULA Mediator of RNA polymerase II transcription subunit 7
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=MED7 PE=3
SV=1
Length = 213
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 25/155 (16%)
Query: 29 PPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPK------------------------ 64
P P +G+Y FG + D LP L + G+ QLY K
Sbjct: 56 PELPRDGSYRAFGNVWKIKDELPELSQMGIEQLYRKRESVTELENGTTTEVEPSPQDSQS 115
Query: 65 GPNIDFK-KELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPH 123
G N + K +E + L + L L+ LEL +L S+Y +++++I +I N+HHLLN RPH
Sbjct: 116 GTNYENKIQESKKLMKSLLLNFLELIGILGVDSSRYEKKLDEIRVIAINIHHLLNEYRPH 175
Query: 124 QARATLIHILELQIQRRKQAVEDIKRRREEAQRRL 158
Q+R +LI + E Q++ +++ +E I + +E + +L
Sbjct: 176 QSRESLIMLFEEQLEHKRKEMEHINKVCDEVESKL 210
>sp|A2QWI7|MED7_ASPNC Mediator of RNA polymerase II transcription subunit 7
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=med7 PE=3 SV=1
Length = 263
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 14/139 (10%)
Query: 29 PPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKEL-----RSLNR---- 79
P P G Y FG LPSL++QG+ QLYP D ++ R LN
Sbjct: 72 PAIPDTGHYSVFGELQNLSTALPSLKDQGITQLYPSSSPADTDRQSPSEPSRPLNHAYYL 131
Query: 80 -----ELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILE 134
L L+ LE VL P Q+ +VED+ +F N HHLLN RPHQAR +LI ++E
Sbjct: 132 LKISKSLLLNFLEFVGVLSVSPEQFESKVEDLRNLFINAHHLLNLYRPHQARESLIMMME 191
Query: 135 LQIQRRKQAVEDIKRRREE 153
Q+ R K+ ++ + + + E
Sbjct: 192 EQLSRTKEEIQQMDKLKAE 210
>sp|A1DN59|MED7_NEOFI Mediator of RNA polymerase II transcription subunit 7
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=med7 PE=3 SV=1
Length = 261
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 70/135 (51%), Gaps = 13/135 (9%)
Query: 32 PIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPN-IDFKKEL---RSLNR-------- 79
P+ G Y FG + LPSL+EQG+ QLYP P D K R N
Sbjct: 74 PMSGQYSVFGELQSLSTTLPSLQEQGIEQLYPSTPTETDPNKPSQPSRPFNHAYYLLKIS 133
Query: 80 -ELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQ 138
L L+ LE +L P Q+ +VED+ +F N HHLLN RPHQAR +LI ++E Q+
Sbjct: 134 KSLLLNFLEFVGILSITPEQFQSKVEDLRNLFINAHHLLNLYRPHQARESLIMMMEEQLN 193
Query: 139 RRKQAVEDIKRRREE 153
R ++ ++ + + E
Sbjct: 194 RSREEIQQMDKMHAE 208
>sp|Q6BKZ4|MED7_DEBHA Mediator of RNA polymerase II transcription subunit 7
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=MED7 PE=3 SV=2
Length = 244
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 10/137 (7%)
Query: 29 PPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQLY-------PKGPNIDFKKELRSLNREL 81
P P Y FG ++ +D LP L+E G QLY ID EL L L
Sbjct: 70 PKQPDADHYRGFGNLWSFEDKLPGLKESGWTQLYKDDDELITSNTKID---ELHKLMDSL 126
Query: 82 QLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRK 141
L+ LEL V+ P Q+ ++ED+ LI N++H+LN+ RPHQ+R +LI +L QI ++
Sbjct: 127 LLNFLELIGVVSIDPQQFHYKIEDLKLILININHILNTYRPHQSRESLIMLLRKQIDMKR 186
Query: 142 QAVEDIKRRREEAQRRL 158
+ +I + E+ + ++
Sbjct: 187 NEISEIDKTSEDIKSKI 203
>sp|Q08278|MED7_YEAST Mediator of RNA polymerase II transcription subunit 7
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=MED7 PE=1 SV=1
Length = 222
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 79/143 (55%), Gaps = 6/143 (4%)
Query: 29 PPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGP-----NIDFK-KELRSLNRELQ 82
PP P Y FG + D LP LE G+ QLY K N +K +ELR L + L
Sbjct: 68 PPMPKNQQYRAFGSIWQVKDQLPDLESMGLTQLYKKSTENESTNYQYKIQELRKLLKSLL 127
Query: 83 LHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQ 142
L+ LEL VL P Y R+VE+I I N+HHLLN RPHQ+R +LI +LE Q++ ++
Sbjct: 128 LNYLELIGVLSINPDMYERKVENIRTILVNIHHLLNEYRPHQSRESLIMLLEEQLEYKRG 187
Query: 143 AVEDIKRRREEAQRRLKESLGTL 165
+ +I++ ++ +L TL
Sbjct: 188 EIREIEQVCKQVHDKLTSIQDTL 210
>sp|Q4WMG1|MED7_ASPFU Mediator of RNA polymerase II transcription subunit 7
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=med7 PE=3 SV=1
Length = 261
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 70/138 (50%), Gaps = 13/138 (9%)
Query: 29 PPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPN-IDFKKEL---RSLNR----- 79
P P G Y FG + LPSL+EQG+ QLYP P D K R N
Sbjct: 71 PEIPKSGQYSVFGELQSLSTTLPSLQEQGIEQLYPSTPTETDPDKPSQPSRPFNHAYYLL 130
Query: 80 ----ELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILEL 135
L L+ LE +L P Q+ +VED+ +F N HHLLN RPHQAR +LI ++E
Sbjct: 131 KISKSLLLNFLEFVGILSIAPEQFQSKVEDLRNLFINAHHLLNLYRPHQARESLIMMMEE 190
Query: 136 QIQRRKQAVEDIKRRREE 153
Q+ R ++ ++ + + E
Sbjct: 191 QLNRSREEIQQMDKMHAE 208
>sp|Q75AV2|MED7_ASHGO Mediator of RNA polymerase II transcription subunit 7 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=MED7 PE=3 SV=1
Length = 199
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 77/135 (57%), Gaps = 5/135 (3%)
Query: 29 PPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPK----GPNIDFK-KELRSLNRELQL 83
PP P G Y FG + D LP LE G+R LY G N +K KEL L + L L
Sbjct: 54 PPVPSAGHYRAFGSVWQVKDELPDLETVGLRNLYDDRGQHGNNYQYKIKELHKLLKSLLL 113
Query: 84 HILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQA 143
++LEL VL P ++ +VE I I N+HHLLN RPHQ+R +LI +LE Q++ +K+
Sbjct: 114 NMLELVSVLSVNPERFPDKVEHIRTILFNIHHLLNEYRPHQSRESLIMLLEEQLEHKKEE 173
Query: 144 VEDIKRRREEAQRRL 158
+ +I ++ Q +L
Sbjct: 174 IANIHAICDKVQAKL 188
>sp|Q60V43|MED7_CAEBR Mediator of RNA polymerase II transcription subunit 7
OS=Caenorhabditis briggsae GN=let-49 PE=3 SV=1
Length = 258
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 7/170 (4%)
Query: 2 ATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNY-TTDDVLPSLEEQGVRQ 60
+ +P PP Y Y + SAP PP P+ + FG Y +DV+ L GV Q
Sbjct: 10 TVSPFPNPPEYASAYTSDRIDNGSAPPPPHPLT-EFKVFGEEYRLEEDVIAPLSTAGVEQ 68
Query: 61 LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLN 118
Y N +K E++ LNR + +L +VL+ P AR ++ D+ IF N+HHL+N
Sbjct: 69 YYVDKNN--WKAEMKKLNRXIGA-FFDLLEVLIRAPDHPARDKKMVDLHTIFINMHHLIN 125
Query: 119 SLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ 168
RP QAR ++ + E QI + +D + + +++ + G+
Sbjct: 126 EFRPVQARDSVRILQERQIDELTEICDDFREYLAHGREVVEDQFKMITGK 175
>sp|Q2GRJ3|MED7_CHAGB Mediator of RNA polymerase II transcription subunit 7 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=MED7 PE=3 SV=1
Length = 263
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 91/207 (43%), Gaps = 46/207 (22%)
Query: 2 ATAAYPPPPPYYR------------LYKDYLQNPN--------------SAPE------- 28
TA +P PP ++R L +DY S PE
Sbjct: 11 VTALWPDPPSFWRDFTPENVERYDSLKEDYTHQQGLSADADADAVIRIPSIPEELINLQP 70
Query: 29 PPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQL----- 83
PP P EGT+ F T + L SLEE G+++L GP D ++ + L+R QL
Sbjct: 71 PPEPTEGTWTLFTETQTLTETLQSLEEAGIQRL---GPTSDIDRDSKHLDRGFQLKKLVK 127
Query: 84 ----HILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQR 139
+ LEL ++ P A ++ED+ ++ N HH LN RPH AR LI I+ +
Sbjct: 128 SLLLNYLELVGLMGYNPDHAAEKIEDLKILLLNFHHTLNEYRPHHAREQLIQIMHAHGDQ 187
Query: 140 RKQAVEDIKRRREEAQRRLKESLGTLE 166
+ I+ ++A +R+ E L +++
Sbjct: 188 MRAETAGIRSVVDKA-KRMIEGLASIQ 213
>sp|Q5AEN6|MED7_CANAL Mediator of RNA polymerase II transcription subunit 7 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MED7 PE=3
SV=1
Length = 304
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 56/88 (63%)
Query: 72 KELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIH 131
KEL L L L+ LEL +L P +Y +++ DI+LI N++HLLN+ RPHQ+R +LI
Sbjct: 166 KELHKLMDSLLLNFLELIGILSIDPIKYDKKIHDINLILININHLLNTYRPHQSRESLIM 225
Query: 132 ILELQIQRRKQAVEDIKRRREEAQRRLK 159
+L+ QI + ++ I ++ + + ++K
Sbjct: 226 LLKNQIDYKFLEIDQINKKCLDIKSKIK 253
>sp|Q0U6Z7|MED7_PHANO Mediator of RNA polymerase II transcription subunit 7
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=MED7 PE=3 SV=1
Length = 276
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 31/164 (18%)
Query: 27 PEPPPPIE-----GTY------ICFGGN--YTTDDVLPSLEEQGVRQLYPK-------GP 66
PEPP E GT F G Y + + L + QLYP
Sbjct: 78 PEPPADTEEFNVFGTINQLKDRDTFNGTMEYISQALAKLLPDWKYEQLYPTTDASNSASS 137
Query: 67 NIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQ 124
+D ++ L R + + +EL ++ P+ + +++DI + N+H L+N RPHQ
Sbjct: 138 TLDRQRYLFRFLRSILVAYIELLGIVAINPTDELKDDKLKDILTMVTNMHALINEYRPHQ 197
Query: 125 ARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLG-TLEG 167
AR TLI +E Q++++K ++ + R++KE +G LEG
Sbjct: 198 ARETLISEMERQVEKKKMEIQGV--------RKMKERVGEVLEG 233
>sp|Q7S2D4|MED7_NEUCR Mediator of RNA polymerase II transcription subunit 7 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=med-7 PE=3 SV=1
Length = 347
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 96 PSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQ 155
P+ +++ D+ +F N HH+LN RPHQAR LI +++ ++ + + A R E
Sbjct: 201 PAAGSQKAADLRTLFLNFHHVLNEYRPHQAREQLIQLMQERLDQTR-AETAANRAVAEKA 259
Query: 156 RRLKESLGTLE 166
RR+ E LG++E
Sbjct: 260 RRVLEGLGSVE 270
>sp|Q1E7S5|MED7_COCIM Mediator of RNA polymerase II transcription subunit 7
OS=Coccidioides immitis (strain RS) GN=MED7 PE=3 SV=1
Length = 256
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 38/136 (27%)
Query: 63 PKGPNIDFKKELRSLNREL---------QLH----------------------------- 84
PK + E +SL+ +L QL+
Sbjct: 71 PKEGSYSLFGEAQSLSTQLPSLEEQGIEQLYPSSLTNETAGPSPDHAYYLLKISKSLLLN 130
Query: 85 ILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAV 144
LEL +L P QY ++EDI +F N HHLLN RPHQ+R +LI ++E Q+++ K+ +
Sbjct: 131 FLELVGILSINPEQYEPKIEDIRNLFINAHHLLNLYRPHQSRESLITMMEEQLEQAKEEI 190
Query: 145 EDIKRRREEAQRRLKE 160
++++ +E + L+E
Sbjct: 191 REMEQTKERVEIYLRE 206
>sp|O60104|MED7_SCHPO Mediator of RNA polymerase II transcription subunit 7
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=med7 PE=1 SV=1
Length = 376
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 50/73 (68%)
Query: 73 ELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHI 132
ELR L+R L L+ LEL ++ + P Q+ +VE+I ++ NLHHL+N RPHQ+R +LI +
Sbjct: 227 ELRFLSRSLMLNFLELLGIMAKAPEQFPSKVENIRVLLLNLHHLINDYRPHQSRESLIML 286
Query: 133 LELQIQRRKQAVE 145
LE Q++ + VE
Sbjct: 287 LEKQLKHEESQVE 299
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 32/90 (35%)
Query: 4 AAYPPPPPYYRLYK---------------------DYLQNPNSAPE----------PPPP 32
+A+PPPPPYY+L+ + LQ P + E P
Sbjct: 11 SAFPPPPPYYKLFTRENIEKVISNMEKEAKHEDDANTLQ-PKTEEEIESLAKLFKKPSCL 69
Query: 33 IEGTYICFGGNYTTDDVLPSLEEQGVRQLY 62
GTY FG + D+ +PSL+E G+ +LY
Sbjct: 70 TSGTYQMFGDTWRLDEAIPSLKEFGIPELY 99
>sp|Q4P2Y1|MED7_USTMA Mediator of RNA polymerase II transcription subunit 7 OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=MED7 PE=3 SV=1
Length = 210
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 33/160 (20%)
Query: 34 EGTYICFGGNYTTDDVLPSLEEQGVRQLYP------KGPNIDFKKELRSLNRELQLHILE 87
+G Y FG + DV P+L++ G+ LYP K + + L RE+ +L+
Sbjct: 36 DGGYTVFGQLWPIPDVTPTLQQLGIPVLYPLEGTDRKELLLTLLRTLLQTYREITGDLLK 95
Query: 88 LS---DVLV------------------------ERPSQYARRVEDISLIFKNLHHLLNSL 120
+ DV V + ++ R++ + + N+ L+N L
Sbjct: 96 PAQPYDVWVPAVPDPNLTPEQQQQQMATNPGFWTQTTEAKDRLKHMQNVVVNMQFLINEL 155
Query: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKE 160
RP QA+ TL I+++Q++RRKQ ++ I+ R + R++E
Sbjct: 156 RPVQAKETLKLIMQMQLERRKQEMQLIQERCATMRARVEE 195
>sp|P0CO76|MED7_CRYNJ Mediator of RNA polymerase II transcription subunit 7
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=MED7 PE=3 SV=1
Length = 239
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 65/132 (49%), Gaps = 14/132 (10%)
Query: 34 EGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKEL---RSLNRELQLHILELSD 90
+G ++CFG YTT+ ++P+ + G+ P ++ ++ L L +L+
Sbjct: 99 DGRWMCFGTMYTTEPIIPTAQSIGLPPFI--DPAVEPQESLPPLLHSFLHTLLLLLDTLT 156
Query: 91 VLVERPSQYA---------RRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRK 141
+ P++ A + ++ ++ + N+ N LR Q+ ATL+ ++E +++ R+
Sbjct: 157 MTARTPNELAAAGWASEGDQYIQHLTNLSANMMVASNQLRSAQSEATLVLLMEKELEERR 216
Query: 142 QAVEDIKRRREE 153
+ E ++ + +E
Sbjct: 217 KQTEKLRSKCKE 228
>sp|P0CO77|MED7_CRYNB Mediator of RNA polymerase II transcription subunit 7
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=MED7 PE=3 SV=1
Length = 239
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 65/132 (49%), Gaps = 14/132 (10%)
Query: 34 EGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKEL---RSLNRELQLHILELSD 90
+G ++CFG YTT+ ++P+ + G+ P ++ ++ L L +L+
Sbjct: 99 DGRWMCFGTMYTTEPIIPTAQSIGLPPFI--DPAVEPQESLPPLLHSFLHTLLLLLDTLT 156
Query: 91 VLVERPSQYA---------RRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRK 141
+ P++ A + ++ ++ + N+ N LR Q+ ATL+ ++E +++ R+
Sbjct: 157 MTARTPNELAAAGWASEGDQYIQHLTNLSANMMVASNQLRSAQSEATLVLLMEKELEERR 216
Query: 142 QAVEDIKRRREE 153
+ E ++ + +E
Sbjct: 217 KQTEKLRSKCKE 228
>sp|P37032|ACON_LEGPH Aconitate hydratase OS=Legionella pneumophila subsp. pneumophila
(strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=acn
PE=3 SV=1
Length = 891
Score = 33.1 bits (74), Expect = 0.96, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 9 PPPYYRLYKDYLQNPNSAPEPPPPIEGTYI--CFGGNYTTDDVLP--SLEEQGVRQLYPK 64
P Y + + +N + PEP PI+ Y+ FG + TTD + P S++ LY K
Sbjct: 635 PDSTYIQHPPFFENLSLKPEPLKPIKQAYVLALFGDSITTDHISPAGSIKASSPAGLYLK 694
Query: 65 GPNIDFK 71
+D K
Sbjct: 695 SKGVDEK 701
>sp|Q8BL80|RHG22_MOUSE Rho GTPase-activating protein 22 OS=Mus musculus GN=Arhgap22 PE=1
SV=2
Length = 702
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 79 RELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPH--QARATLIHILELQ 136
R LQ + EL L ++ ++Y R ++ I +L ++ L Q R +LE++
Sbjct: 601 RALQGQVAELRAELCQQRTEYKRSLKSIEEGSADLRKQMSRLEEELDQERKKYA-MLEIK 659
Query: 137 IQRRKQAVEDIKRRREEAQRRLKESLGTL 165
++ ++A ED +RR + QR ++E TL
Sbjct: 660 LRNSERAREDAERRNQLLQREMEEFFSTL 688
>sp|Q8ENI4|FLIT_OCEIH Flagellar protein FliT OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=fliT PE=3
SV=1
Length = 117
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 102 RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDI 147
RVE I I K++ HLLN ++ R +I +L+ +I+ R+Q ++D+
Sbjct: 3 RVEPIFKITKSMQHLLNVEITNKNREQVIGMLQQKIEEREQILQDL 48
>sp|C7QJN7|LEU1_CATAD 2-isopropylmalate synthase OS=Catenulispora acidiphila (strain DSM
44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) GN=leuA
PE=3 SV=1
Length = 573
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 89 SDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVE 145
+ V V P+ YA ++E +S H++ S+ PH R T + EL + Q VE
Sbjct: 219 ATVEVATPNVYADQIEYMSRSLARREHVILSVHPHNDRGTGVACAELAVLAGAQRVE 275
>sp|Q98HN3|LEU1_RHILO 2-isopropylmalate synthase OS=Rhizobium loti (strain MAFF303099)
GN=leuA PE=3 SV=1
Length = 558
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 89 SDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVE 145
S V + P+ YA R+E + N +L+ SL PH R T I EL + VE
Sbjct: 210 STVEMSTPNIYADRIEWMCRNLDNRENLIISLHPHNDRGTGIATTELGLMAGADRVE 266
>sp|Q640V3|NOL12_XENTR Nucleolar protein 12 OS=Xenopus tropicalis GN=nol12 PE=2 SV=1
Length = 216
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 22/25 (88%)
Query: 136 QIQRRKQAVEDIKRRREEAQRRLKE 160
++QRRK AVE+IKR+ +E Q++++E
Sbjct: 34 KMQRRKAAVEEIKRKIKEEQKKMRE 58
>sp|D1ZSG5|NOP9_SORMK Nucleolar protein 9 OS=Sordaria macrospora (strain ATCC MYA-333 /
DSM 997 / K(L3346) / K-hell) GN=NOP9 PE=3 SV=1
Length = 761
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 16 YKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELR 75
++D A PPP++GTY ++ P E+G R GPN +F++E
Sbjct: 43 HQDAFAPVTDAGYVPPPLDGTY--------DENAFPGGPEEGRRN----GPNTNFEREFF 90
Query: 76 SLNRELQLHILELSDVLVE 94
+ E + +D L+E
Sbjct: 91 GMLAEQEQEYFRHADELLE 109
>sp|Q3K5T5|LPTD_PSEPF LPS-assembly protein LptD OS=Pseudomonas fluorescens (strain Pf0-1)
GN=lptD PE=3 SV=1
Length = 937
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 43 NYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVER 95
N T D LP + G +P+G N D++ E+ +R+LQ D VER
Sbjct: 476 NITPYDRLPQITFNGQLPYHPEGLNFDYETEVVRFDRDLQNGNFVNEDGTVER 528
>sp|Q9BTV5|FSD1_HUMAN Fibronectin type III and SPRY domain-containing protein 1 OS=Homo
sapiens GN=FSD1 PE=1 SV=1
Length = 496
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 72 KELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRP------HQA 125
K L N E+Q I L +L+ + A+ ED+ F++L LL L+ Q
Sbjct: 13 KTLAVKNEEIQSFIYSLKQMLLNVEANSAKVQEDLEAEFQSLFSLLEELKEGMLMKIKQD 72
Query: 126 RATLIHILELQIQRRKQAVEDIKRRREEAQRRLK 159
RA+ + L+ Q+ +A+E + E A + L+
Sbjct: 73 RASRTYELQNQLAACTRALESSEELLETANQTLQ 106
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,476,961
Number of Sequences: 539616
Number of extensions: 3257491
Number of successful extensions: 16064
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 151
Number of HSP's that attempted gapping in prelim test: 15579
Number of HSP's gapped (non-prelim): 578
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)