Query 030977
Match_columns 168
No_of_seqs 110 out of 178
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 11:32:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ykh_A RNA polymerase II media 100.0 6.7E-39 2.3E-43 237.6 10.9 92 68-159 15-107 (108)
2 3fbi_A Mediator of RNA polymer 99.4 6.7E-14 2.3E-18 99.3 2.5 43 2-44 10-84 (84)
3 3nmd_A CGMP dependent protein 93.9 0.05 1.7E-06 37.1 3.4 36 123-158 35-70 (72)
4 1zxa_A CGMP-dependent protein 91.6 0.3 1E-05 32.7 4.8 38 124-161 21-58 (67)
5 1q08_A Zn(II)-responsive regul 70.0 8.3 0.00028 26.0 5.0 37 126-162 37-73 (99)
6 1deq_A Fibrinogen (alpha chain 67.1 47 0.0016 29.0 10.1 57 103-160 101-159 (390)
7 3gp4_A Transcriptional regulat 63.5 41 0.0014 24.6 8.1 34 128-161 81-114 (142)
8 3i00_A HIP-I, huntingtin-inter 62.4 24 0.00084 25.7 6.5 60 97-156 11-75 (120)
9 1m1j_A Fibrinogen alpha subuni 61.3 73 0.0025 28.5 10.4 62 100-162 96-159 (491)
10 1q06_A Transcriptional regulat 60.5 23 0.0008 25.6 6.2 36 126-161 77-112 (135)
11 1few_A Second mitochondria-der 59.9 61 0.0021 25.4 9.1 95 68-162 42-157 (184)
12 1m1j_B Fibrinogen beta chain; 59.6 95 0.0033 27.6 12.9 17 27-43 35-51 (464)
13 3gpv_A Transcriptional regulat 59.4 38 0.0013 24.9 7.3 34 127-160 94-127 (148)
14 1g73_A SMAC/diablo, second mit 56.1 67 0.0023 24.7 8.5 94 68-161 42-156 (162)
15 2qyw_A Vesicle transport throu 56.0 14 0.00048 25.9 4.1 24 138-161 45-68 (102)
16 3onj_A T-snare VTI1; helix, HA 55.1 37 0.0013 23.4 6.2 24 138-161 30-53 (97)
17 3ghg_A Fibrinogen alpha chain; 54.3 65 0.0022 29.3 9.0 20 136-155 132-151 (562)
18 1vcs_A Vesicle transport throu 48.8 14 0.00047 25.9 3.1 25 138-162 34-58 (102)
19 4aj5_K Spindle and kinetochore 48.8 62 0.0021 23.8 6.7 49 116-164 48-97 (123)
20 2q13_A DCC-interacting protein 46.4 1.3E+02 0.0043 25.0 12.0 60 99-160 190-249 (385)
21 1m1j_B Fibrinogen beta chain; 46.3 1.1E+02 0.0037 27.2 9.1 24 136-159 169-192 (464)
22 1r8e_A Multidrug-efflux transp 45.9 52 0.0018 25.8 6.5 35 127-161 78-112 (278)
23 3mq9_A Bone marrow stromal ant 45.2 1.1E+02 0.0036 26.0 8.8 39 114-152 383-421 (471)
24 3e98_A GAF domain of unknown f 43.8 33 0.0011 27.7 5.0 36 122-158 60-95 (252)
25 1gmj_A ATPase inhibitor; coile 43.5 73 0.0025 21.9 6.0 30 132-161 48-77 (84)
26 3e6s_A Ferritin; iron storage, 42.6 1E+02 0.0035 22.9 7.8 49 105-157 97-145 (168)
27 3sjb_C Golgi to ER traffic pro 41.1 40 0.0014 23.6 4.4 35 132-166 53-87 (93)
28 3hh0_A Transcriptional regulat 38.6 77 0.0026 23.1 6.0 33 129-161 81-113 (146)
29 2xdj_A Uncharacterized protein 38.3 91 0.0031 21.1 6.7 38 125-162 17-54 (83)
30 3m91_A Proteasome-associated A 38.3 71 0.0024 19.8 5.1 16 137-152 32-47 (51)
31 2q6q_A Spindle POLE BODY compo 37.9 65 0.0022 21.5 4.8 28 133-160 8-35 (74)
32 1t6f_A Geminin; coiled-coil, c 36.0 43 0.0015 19.5 3.3 25 132-156 11-35 (37)
33 2k48_A Nucleoprotein; viral pr 34.7 60 0.002 23.3 4.5 25 138-162 78-102 (107)
34 1gl2_C VTI1B, vesicle transpor 34.3 57 0.002 20.8 4.1 27 134-160 36-62 (65)
35 1sn9_A BBAT, tetrameric beta-B 34.0 32 0.0011 18.3 2.3 15 67-81 6-20 (26)
36 3vnx_A Ferritin; 4-helix bundl 33.6 1.5E+02 0.0051 22.9 7.2 49 105-157 137-186 (204)
37 3oja_B Anopheles plasmodium-re 33.5 2.4E+02 0.008 24.4 11.8 35 132-166 548-582 (597)
38 2yy0_A C-MYC-binding protein; 32.8 81 0.0028 19.5 4.5 28 132-159 23-50 (53)
39 3qz3_A Ferritin; structural ge 32.5 1.6E+02 0.0054 22.2 7.8 48 105-156 105-152 (184)
40 2ic6_A Nucleocapsid protein; h 32.4 75 0.0026 21.6 4.5 26 137-162 47-72 (78)
41 1gl2_B Syntaxin 7; membrane pr 31.8 98 0.0033 19.5 8.8 40 103-148 18-57 (65)
42 3uno_A Probable bacterioferrit 31.6 1.7E+02 0.0058 22.2 7.8 48 106-157 102-149 (189)
43 1r8d_A Transcription activator 30.9 96 0.0033 21.1 5.2 30 129-158 76-105 (109)
44 3oja_B Anopheles plasmodium-re 29.5 2.8E+02 0.0094 24.0 11.2 22 124-145 519-540 (597)
45 2zqm_A Prefoldin beta subunit 29.2 1.4E+02 0.0047 20.3 6.0 33 126-158 68-100 (117)
46 2w6b_A RHO guanine nucleotide 28.0 1.2E+02 0.004 19.3 6.2 24 130-153 12-35 (56)
47 3a68_A Sferh-4, ferritin-4, ch 27.8 2.1E+02 0.0072 22.1 7.2 47 106-156 143-190 (212)
48 4emc_A Monopolin complex subun 27.7 1.3E+02 0.0044 23.7 5.8 28 132-159 31-58 (190)
49 1m1j_C Fibrinogen gamma chain; 27.0 3.1E+02 0.011 23.7 9.5 33 127-159 97-129 (409)
50 2zxx_A Geminin; coiled-coil, c 27.0 79 0.0027 21.4 3.9 28 133-160 39-66 (79)
51 3oei_C RELK (toxin RV3358); to 26.8 54 0.0018 22.7 3.2 30 69-98 20-52 (96)
52 3kxu_A Ferritin; iron storage 26.8 1.8E+02 0.006 22.2 6.5 49 105-157 106-155 (191)
53 4fi5_A Nucleoprotein; structur 26.6 92 0.0031 22.5 4.4 30 70-99 27-59 (113)
54 2nps_B Syntaxin 13, vesicle-as 26.6 1.3E+02 0.0044 19.2 9.9 48 103-156 15-62 (71)
55 1rcd_A L ferritin; iron storag 26.3 2E+02 0.0067 21.2 7.2 48 106-157 107-155 (173)
56 3uv4_A Second bromodomain of h 26.3 2E+02 0.0068 21.3 6.7 87 69-156 25-146 (158)
57 1uii_A Geminin; human, DNA rep 26.2 1.3E+02 0.0045 20.5 5.0 28 133-160 51-78 (83)
58 2cih_A Ferritin heavy chain; a 26.1 2.1E+02 0.0071 21.4 7.2 48 105-156 110-158 (183)
59 3q0x_A Centriole protein; cent 25.9 1.2E+02 0.0041 24.4 5.5 33 130-162 180-212 (228)
60 3gp4_A Transcriptional regulat 25.7 1.3E+02 0.0043 21.8 5.3 34 131-164 91-124 (142)
61 1fxk_A Prefoldin; archaeal pro 25.7 1.5E+02 0.0052 19.8 6.6 42 124-165 61-102 (107)
62 1nhl_A Synaptosomal-associated 25.6 1.2E+02 0.0041 18.5 6.8 26 141-166 27-52 (54)
63 2ic9_A Nucleocapsid protein; h 25.0 1.1E+02 0.0039 21.5 4.5 20 123-142 47-66 (96)
64 3ka8_A Ferritin, middle subuni 24.9 2.1E+02 0.0073 21.2 6.7 48 105-156 106-154 (176)
65 2vz4_A Tipal, HTH-type transcr 24.3 1.2E+02 0.0041 20.6 4.7 32 128-159 74-105 (108)
66 2cr7_A Paired amphipathic heli 24.1 55 0.0019 21.8 2.7 41 80-120 29-69 (80)
67 2nps_C Vesicle transport throu 24.1 1.4E+02 0.0047 19.8 4.8 29 134-162 46-74 (81)
68 3mq7_A Bone marrow stromal ant 24.0 2.1E+02 0.0073 20.8 6.8 23 136-158 72-94 (121)
69 1sfc_B Protein (syntaxin 1A), 23.8 1.6E+02 0.0055 19.4 9.9 46 103-154 30-75 (83)
70 2zdi_C Prefoldin subunit alpha 23.8 1.6E+02 0.0056 21.3 5.6 47 119-165 93-142 (151)
71 3s4r_A Vimentin; alpha-helix, 22.9 1.8E+02 0.0063 19.7 8.4 35 71-106 8-42 (93)
72 4fla_A Regulation of nuclear P 22.4 2.4E+02 0.0084 21.0 12.9 106 55-160 8-132 (152)
73 3axj_A GM27569P, translin; tra 21.9 1.7E+02 0.0058 23.5 5.7 41 80-120 22-62 (249)
74 3zvr_A Dynamin-1; hydrolase, D 21.9 4.4E+02 0.015 24.7 9.3 83 68-161 671-765 (772)
75 1t3j_A Mitofusin 1; coiled coi 21.7 2.1E+02 0.0072 20.0 6.3 39 123-161 42-80 (96)
76 2zhg_A Redox-sensitive transcr 21.6 1.7E+02 0.0059 21.4 5.4 33 127-159 89-121 (154)
77 1kd8_B GABH BLL, GCN4 acid bas 21.5 1.3E+02 0.0044 17.4 5.0 29 133-161 6-34 (36)
78 3a8y_C BAG family molecular ch 21.4 2.6E+02 0.0089 20.9 6.9 57 101-157 34-108 (142)
79 2bn5_B U1 small nuclear ribonu 21.2 41 0.0014 17.8 1.2 7 29-35 13-19 (26)
80 1fio_A SSO1 protein; four heli 21.0 1.5E+02 0.0053 21.9 5.1 43 121-168 153-195 (196)
81 2xb0_X Chromo domain-containin 20.9 3.4E+02 0.012 22.1 7.7 47 71-118 8-57 (270)
82 2v2p_A Ferritin light chain; m 20.8 2.6E+02 0.0088 20.6 7.2 48 106-157 106-154 (174)
83 1s3q_A Ferritin; ferroxidase, 20.7 2.6E+02 0.0088 20.6 7.4 46 106-155 99-144 (173)
84 1fxk_C Protein (prefoldin); ar 20.7 2.2E+02 0.0077 19.9 6.0 44 119-162 83-129 (133)
85 1wlq_A Geminin; coiled-coil; 2 20.3 1.6E+02 0.0055 20.1 4.5 26 133-158 43-68 (83)
86 2czy_A Paired amphipathic heli 20.2 71 0.0024 21.1 2.6 41 80-120 23-63 (77)
87 1ez3_A Syntaxin-1A; three heli 20.2 2.2E+02 0.0074 19.5 8.4 29 83-111 8-36 (127)
88 3hd7_B Syntaxin-1A; membrane p 20.2 2.2E+02 0.0076 19.7 9.9 47 103-155 30-76 (109)
89 1s94_A S-syntaxin; three helix 20.1 2.7E+02 0.0091 20.5 7.7 27 129-155 79-105 (180)
No 1
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A
Probab=100.00 E-value=6.7e-39 Score=237.62 Aligned_cols=92 Identities=40% Similarity=0.681 Sum_probs=88.1
Q ss_pred ccHH-HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 68 IDFK-KELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVED 146 (168)
Q Consensus 68 ~D~k-~ELkkL~~sll~~fleLl~~l~~~P~~~~~ki~~i~~l~iNmhhllNe~RPhQARetL~~~le~Ql~~rr~~~~~ 146 (168)
.|.| .||+||++|||+|||+|+|+|+.+|+.+++||+||++||+|||||||+||||||||||+.||++|+++||+++++
T Consensus 15 ~~~k~~ELkkLn~SlL~nfLeLl~~l~~~P~~~~~kv~di~~lfiNmHhLlNeyRPhQARetL~~~le~Qi~~kr~e~~~ 94 (108)
T 1ykh_A 15 YQYKIQELRKLLKSLLLNYLELIGVLSINPDMYERKVENIRTILVNIHHLLNEYRPHQSRESLIMLLEEQLEYKRGEIRE 94 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 499999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 030977 147 IKRRREEAQRRLK 159 (168)
Q Consensus 147 ir~~~~~~~~~L~ 159 (168)
|+++|++|+++|+
T Consensus 95 i~~~~~~~~~~L~ 107 (108)
T 1ykh_A 95 IEQVCKQVHDKLT 107 (108)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999885
No 2
>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A
Probab=99.40 E-value=6.7e-14 Score=99.30 Aligned_cols=43 Identities=30% Similarity=0.733 Sum_probs=33.3
Q ss_pred CCCCCCCChhhhhccccccCCC--------------------------CCC------CCCCCCCCCCceecCcee
Q 030977 2 ATAAYPPPPPYYRLYKDYLQNP--------------------------NSA------PEPPPPIEGTYICFGGNY 44 (168)
Q Consensus 2 ~~S~fPpPP~fyk~yt~~~~~~--------------------------~~~------ppPp~P~~g~y~~FG~~~ 44 (168)
++|+|||||+|||+||.+|++. ..+ .||++|.+|+|++||+.|
T Consensus 10 isSlfPpPPPf~K~FT~eNl~kl~e~k~~~~~~~~~~~~~~~~~~~~~~lp~eL~~LiPP~~P~~g~yr~FG~~w 84 (84)
T 3fbi_A 10 VSSLYPPPPPYVKFFTQSNLEKLPKYKEKKAASAKQTAPNNSNGGSEEEITCALDYLIPPPMPKNQQYRAFGSIW 84 (84)
T ss_dssp --CCSCCCCGGGGGCCHHHHHHHHHHHHHHHC---------------CCCCSGGGGGSCCCCCSSGGGSCSCCCC
T ss_pred cccCCCCCCchhhhcCHHHHHHHHHHHHHhcccccccccccccccccCCCCHHHhccCCCCCCCCCCeeecCccC
Confidence 5799999999999999887410 011 378888999999999987
No 3
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=93.92 E-value=0.05 Score=37.09 Aligned_cols=36 Identities=17% Similarity=0.378 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 123 HQARATLIHILELQIQRRKQAVEDIKRRREEAQRRL 158 (168)
Q Consensus 123 hQARetL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L 158 (168)
-++++.+|..++.+|+++.++|..++..||+.++++
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 467889999999999999999999999999987765
No 4
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=91.64 E-value=0.3 Score=32.73 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 124 QARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKES 161 (168)
Q Consensus 124 QARetL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~ 161 (168)
++++..+.-|+..++.+.++|++++..+++..+++...
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~~~ 58 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLPVP 58 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 57899999999999999999999999999999998743
No 5
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=70.01 E-value=8.3 Score=26.00 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 126 RATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESL 162 (168)
Q Consensus 126 RetL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~~ 162 (168)
...+..+|+.|+++..+.++++++..+..+..++.+-
T Consensus 37 ~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 73 (99)
T 1q08_A 37 CQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888999999999999999988888888877543
No 6
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=67.07 E-value=47 Score=28.99 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhccChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 103 VEDISLIFKNLHHLLNSLRPHQAR--ATLIHILELQIQRRKQAVEDIKRRREEAQRRLKE 160 (168)
Q Consensus 103 i~~i~~l~iNmhhllNe~RPhQAR--etL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~ 160 (168)
.+.....=..+.++..++|-|+.. +++..-+. +|+..+.-|++++..+.+.+..++-
T Consensus 101 ~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 101 FAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334455555566666652 33333333 4444444444444444444444433
No 7
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=63.47 E-value=41 Score=24.57 Aligned_cols=34 Identities=9% Similarity=0.129 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 128 TLIHILELQIQRRKQAVEDIKRRREEAQRRLKES 161 (168)
Q Consensus 128 tL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~ 161 (168)
....+|+.|+++-.+.++++++..+..+..++.+
T Consensus 81 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 114 (142)
T 3gp4_A 81 ARAELLKKQRIELKNRIDVMQEALDRLDFKIDNY 114 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555443
No 8
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=62.41 E-value=24 Score=25.68 Aligned_cols=60 Identities=10% Similarity=0.077 Sum_probs=27.5
Q ss_pred chHHHHHHHH----HHHHHHHHHHHhccChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 97 SQYARRVEDI----SLIFKNLHHLLNSLRPHQAR-ATLIHILELQIQRRKQAVEDIKRRREEAQR 156 (168)
Q Consensus 97 ~~~~~ki~~i----~~l~iNmhhllNe~RPhQAR-etL~~~le~Ql~~rr~~~~~ir~~~~~~~~ 156 (168)
+..+.-|++| ..+=.++..+.++.++.... ..=+.-|+.++++.+........-|+..+.
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~ 75 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRA 75 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455543 34455666666666654432 112334444444444443333333444333
No 9
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=61.28 E-value=73 Score=28.51 Aligned_cols=62 Identities=10% Similarity=0.133 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 100 ARRVEDISLIFKNLHHLLNSLRPHQAR--ATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESL 162 (168)
Q Consensus 100 ~~ki~~i~~l~iNmhhllNe~RPhQAR--etL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~~ 162 (168)
..+.......=..+.+..+++|-|++. +++..-+ .+|+-.|.-+++++..+.+.+..+..+.
T Consensus 96 k~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi-~~IrvLq~~l~~q~skIQRLE~dI~~q~ 159 (491)
T 1m1j_A 96 KPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV-NRIKALQNSIQEQVVEMKRLEVDIDIKI 159 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556667777788888863 4444444 5555556666666666666555555443
No 10
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=60.47 E-value=23 Score=25.57 Aligned_cols=36 Identities=8% Similarity=0.118 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 126 RATLIHILELQIQRRKQAVEDIKRRREEAQRRLKES 161 (168)
Q Consensus 126 RetL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~ 161 (168)
.+.+..+|+.|+++..+.++++++..+..+.++..|
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 112 (135)
T 1q06_A 77 SADVKRRTLEKVAEIERHIEELQSMRDQLLALANAC 112 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677888888888888888888888888777665
No 11
>1few_A Second mitochondria-derived activator of caspases; SMAC, diablo, apoptosis, caspase activation, IAP inhibition; 2.20A {Homo sapiens} SCOP: a.7.4.1
Probab=59.91 E-value=61 Score=25.41 Aligned_cols=95 Identities=13% Similarity=0.079 Sum_probs=56.8
Q ss_pred ccHHHHHHHHHH---HHHHHHHHHHHHHhcC--CchH----------HHHHHHHHHHHHHHHHHHh------ccChHHHH
Q 030977 68 IDFKKELRSLNR---ELQLHILELSDVLVER--PSQY----------ARRVEDISLIFKNLHHLLN------SLRPHQAR 126 (168)
Q Consensus 68 ~D~k~ELkkL~~---sll~~fleLl~~l~~~--P~~~----------~~ki~~i~~l~iNmhhllN------e~RPhQAR 126 (168)
+|.-.|-.|.++ ||+..|..++|.|..+ +..| .++-+.+..+-.+|....| |---.=--
T Consensus 42 Ida~teY~kal~tLiSL~k~y~a~lgkln~~eeD~vWqvIi~~R~E~~~kk~e~~rlEs~w~~a~~L~e~aAEaAy~sGA 121 (184)
T 1few_A 42 IEAITEYTKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWMTAVGLSEMAAEAAYQTGA 121 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 344445544433 7888888888876432 2222 3445555555555555444 11111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 127 ATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESL 162 (168)
Q Consensus 127 etL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~~ 162 (168)
+..-..++..|+--+..++++|+.-.+++.+|.++-
T Consensus 122 d~asvta~~~iq~aqsqV~~~r~~s~~ae~~Lae~q 157 (184)
T 1few_A 122 DQASITARNHIQLVKLQVEEVHQLSRKAETKLAEAQ 157 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777778888888888888888888753
No 12
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=59.63 E-value=95 Score=27.56 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCCCCCCCCCceecCce
Q 030977 27 PEPPPPIEGTYICFGGN 43 (168)
Q Consensus 27 ppPp~P~~g~y~~FG~~ 43 (168)
|-|||..+|.|+++-..
T Consensus 35 ~~~~~~~~~~~~~~~~~ 51 (464)
T 1m1j_B 35 PVAPPISGTGYQPRPPK 51 (464)
T ss_dssp -----------------
T ss_pred CCCCCcCCCCcCCCCCC
Confidence 44555667889987654
No 13
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=59.43 E-value=38 Score=24.86 Aligned_cols=34 Identities=12% Similarity=0.251 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 127 ATLIHILELQIQRRKQAVEDIKRRREEAQRRLKE 160 (168)
Q Consensus 127 etL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~ 160 (168)
+.+..+|+.|+++..+.++++++..+..+..++.
T Consensus 94 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~ 127 (148)
T 3gpv_A 94 LHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666665555543
No 14
>1g73_A SMAC/diablo, second mitochondria-derived activator of caspases; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: a.7.4.1
Probab=56.08 E-value=67 Score=24.69 Aligned_cols=94 Identities=13% Similarity=0.085 Sum_probs=58.9
Q ss_pred ccHHHHHHHHHH---HHHHHHHHHHHHHhcC--CchH----------HHHHHHHHHHHHHHHHHHh------ccChHHHH
Q 030977 68 IDFKKELRSLNR---ELQLHILELSDVLVER--PSQY----------ARRVEDISLIFKNLHHLLN------SLRPHQAR 126 (168)
Q Consensus 68 ~D~k~ELkkL~~---sll~~fleLl~~l~~~--P~~~----------~~ki~~i~~l~iNmhhllN------e~RPhQAR 126 (168)
+|.-.|-.|..+ ||+..|..++|.|..+ +..| .++-+.+..+-.+|....| |---.=--
T Consensus 42 Ida~teY~kal~tLiSL~~~y~a~lgkl~~~eeD~~WqvIi~~R~E~~d~k~e~~rles~w~~a~~l~e~aAEaAy~sGA 121 (162)
T 1g73_A 42 IEAITEYTKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWMTAVGLSEMAAEAAYQTGA 121 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 344445544433 7788888888876442 2222 3445555555555555444 11111123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 127 ATLIHILELQIQRRKQAVEDIKRRREEAQRRLKES 161 (168)
Q Consensus 127 etL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~ 161 (168)
+..-..++..|+--+..++++|+.-.+|+.+|.++
T Consensus 122 d~asvta~~~iq~AqsqV~~~r~~s~~ae~~l~e~ 156 (162)
T 1g73_A 122 DQASITARNHIQLVKLQVEEVHQLSRKAETKLAEA 156 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888888889999999999999999875
No 15
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=55.97 E-value=14 Score=25.91 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 138 QRRKQAVEDIKRRREEAQRRLKES 161 (168)
Q Consensus 138 ~~rr~~~~~ir~~~~~~~~~L~~~ 161 (168)
++|+..+.++.+.+++|+++|.+.
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qM 68 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEM 68 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777888888888877764
No 16
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=55.11 E-value=37 Score=23.42 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 138 QRRKQAVEDIKRRREEAQRRLKES 161 (168)
Q Consensus 138 ~~rr~~~~~ir~~~~~~~~~L~~~ 161 (168)
++|+..+..+.+.+++|.++|.+.
T Consensus 30 e~Rk~~i~~ie~~ldEA~ell~qM 53 (97)
T 3onj_A 30 SQRNTTLKHVEQQQDELFDLLDQM 53 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666553
No 17
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.32 E-value=65 Score=29.33 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030977 136 QIQRRKQAVEDIKRRREEAQ 155 (168)
Q Consensus 136 Ql~~rr~~~~~ir~~~~~~~ 155 (168)
+|+..|..|++++..+.+.+
T Consensus 132 nIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444433
No 18
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=48.82 E-value=14 Score=25.93 Aligned_cols=25 Identities=28% Similarity=0.427 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 138 QRRKQAVEDIKRRREEAQRRLKESL 162 (168)
Q Consensus 138 ~~rr~~~~~ir~~~~~~~~~L~~~~ 162 (168)
++|+..+.++.+.+++|+++|.+.-
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMe 58 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMD 58 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888888888887753
No 19
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=48.76 E-value=62 Score=23.82 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=35.7
Q ss_pred HHhccChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030977 116 LLNSLRPHQARA-TLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGT 164 (168)
Q Consensus 116 llNe~RPhQARe-tL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~~~~ 164 (168)
||.++.-.|+|. +|...++.=..+.++.+++||..+.....++.+....
T Consensus 48 Ll~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~~tm~miQ~LQ~~ 97 (123)
T 4aj5_K 48 LLKELSVIKSRYQTLYARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQ 97 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555567764 5677777666677799999999999988888775543
No 20
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=46.39 E-value=1.3e+02 Score=25.02 Aligned_cols=60 Identities=10% Similarity=0.255 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 99 YARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKE 160 (168)
Q Consensus 99 ~~~ki~~i~~l~iNmhhllNe~RPhQARetL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~ 160 (168)
...+.+-+..|..-|+-.++-| ||+.+.+..-|+..+++....+..+|+..++.++.+.+
T Consensus 190 ~rk~~e~le~l~~~~~a~~~ff--~~g~~~~~~~~~~~~~~l~~~l~~~r~~~~~~~~~~~~ 249 (385)
T 2q13_A 190 YKKKIALLEPLLGYMQAQISFF--KMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQ 249 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555544 45555544455555555666666666665555544443
No 21
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=46.32 E-value=1.1e+02 Score=27.20 Aligned_cols=24 Identities=0% Similarity=0.295 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 136 QIQRRKQAVEDIKRRREEAQRRLK 159 (168)
Q Consensus 136 Ql~~rr~~~~~ir~~~~~~~~~L~ 159 (168)
+|...+..++.++.++.+.+..+.
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 22
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=45.88 E-value=52 Score=25.75 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 127 ATLIHILELQIQRRKQAVEDIKRRREEAQRRLKES 161 (168)
Q Consensus 127 etL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~ 161 (168)
+.+..+|+.|+++.+++++++++..+..+..++..
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (278)
T 1r8e_A 78 EELFAFYTEQERQIREKLDFLSALEQTISLVKKRM 112 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888777776653
No 23
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=45.22 E-value=1.1e+02 Score=26.03 Aligned_cols=39 Identities=13% Similarity=0.313 Sum_probs=18.4
Q ss_pred HHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 114 HHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRRE 152 (168)
Q Consensus 114 hhllNe~RPhQARetL~~~le~Ql~~rr~~~~~ir~~~~ 152 (168)
.-+|.+++...-.+..-.+|++||++-+....+++++..
T Consensus 383 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (471)
T 3mq9_A 383 TAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAA 421 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 334444444444444445555555555555444444433
No 24
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=43.84 E-value=33 Score=27.68 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 122 PHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRL 158 (168)
Q Consensus 122 PhQARetL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L 158 (168)
||+.+ ..+.+.+.|+++.|+.++.++..+...-+.-
T Consensus 60 ph~~~-~aVSL~erQ~~~LR~r~~~Le~~L~~Li~~A 95 (252)
T 3e98_A 60 PHQPG-DAVSLVERQVRLLRERNIEMRHRLSQLMDVA 95 (252)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67766 6778999999999999998888887644433
No 25
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=43.55 E-value=73 Score=21.90 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 132 ILELQIQRRKQAVEDIKRRREEAQRRLKES 161 (168)
Q Consensus 132 ~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~ 161 (168)
-|..+|+..+++|+.+...++..+..|++.
T Consensus 48 kl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 48 HKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677888888888888887776666654
No 26
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A
Probab=42.57 E-value=1e+02 Score=22.91 Aligned_cols=49 Identities=12% Similarity=0.006 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 105 DISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRR 157 (168)
Q Consensus 105 ~i~~l~iNmhhllNe~RPhQARetL~~~le~Ql~~rr~~~~~ir~~~~~~~~~ 157 (168)
.+...+.++|.++.+-+=++.+.-|...+++|++ +++.+...++..+.+
T Consensus 97 ~v~~~l~~l~~la~~~~D~~t~~fLe~fl~eQve----~~~~l~~~l~~l~~~ 145 (168)
T 3e6s_A 97 ANTRSLLNLAEAASTCHDFAVMAFLNPFHLQQVN----EEDKIGSILAKVTDE 145 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 4666778889999988999999999888888886 555666666666543
No 27
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=41.11 E-value=40 Score=23.65 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030977 132 ILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLE 166 (168)
Q Consensus 132 ~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~~~~~~ 166 (168)
-|++|+++..++++.+.+.+...+..+...+..|+
T Consensus 53 KL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~~~ 87 (93)
T 3sjb_C 53 KNNRKLDSLDKEINNLKDEIQSENKAFQAHLHKLE 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788899999999999999999888887777664
No 28
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=38.61 E-value=77 Score=23.15 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 129 LIHILELQIQRRKQAVEDIKRRREEAQRRLKES 161 (168)
Q Consensus 129 L~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~ 161 (168)
...+|+.|.++..++++++++.++.++.+++.+
T Consensus 81 ~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~ 113 (146)
T 3hh0_A 81 FLRQMHFQREVLLAEQERIAKVLSHMDEMTKKF 113 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777777777777777777777776643
No 29
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=38.32 E-value=91 Score=21.10 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 125 ARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESL 162 (168)
Q Consensus 125 ARetL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~~ 162 (168)
|+.....-|..||+..+.++..+|-.+++..--|++..
T Consensus 17 ~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 17 AHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44455566888888888888888888887666655543
No 30
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=38.26 E-value=71 Score=19.82 Aligned_cols=16 Identities=6% Similarity=0.314 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 030977 137 IQRRKQAVEDIKRRRE 152 (168)
Q Consensus 137 l~~rr~~~~~ir~~~~ 152 (168)
+++-|++|..++..++
T Consensus 32 L~~AR~el~~Lkeele 47 (51)
T 3m91_A 32 LKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 31
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=37.88 E-value=65 Score=21.47 Aligned_cols=28 Identities=14% Similarity=0.457 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 133 LELQIQRRKQAVEDIKRRREEAQRRLKE 160 (168)
Q Consensus 133 le~Ql~~rr~~~~~ir~~~~~~~~~L~~ 160 (168)
|..++++++++|+++...+...++.|..
T Consensus 8 L~~kl~~Kq~EI~rLnvlvgslR~KLiK 35 (74)
T 2q6q_A 8 LNFKLREKQNEIFELKKIAETLRSKLEK 35 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888877777766665543
No 32
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=36.05 E-value=43 Score=19.52 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 132 ILELQIQRRKQAVEDIKRRREEAQR 156 (168)
Q Consensus 132 ~le~Ql~~rr~~~~~ir~~~~~~~~ 156 (168)
-|...|++|.++|+.+++.-++..+
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 3566788999999999988777543
No 33
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=34.68 E-value=60 Score=23.32 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 138 QRRKQAVEDIKRRREEAQRRLKESL 162 (168)
Q Consensus 138 ~~rr~~~~~ir~~~~~~~~~L~~~~ 162 (168)
++|+.++..++.++.+.++.|.++.
T Consensus 78 ~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 78 QNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555554443
No 34
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=34.30 E-value=57 Score=20.81 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 134 ELQIQRRKQAVEDIKRRREEAQRRLKE 160 (168)
Q Consensus 134 e~Ql~~rr~~~~~ir~~~~~~~~~L~~ 160 (168)
++||.+.+..+..+...+++++.+|+.
T Consensus 36 REql~~t~~~l~~~d~~l~~s~k~L~~ 62 (65)
T 1gl2_C 36 RDQLERTKSRLVNTNENLSKSRKILRS 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHhHHHhHHHhHHhHHHHHHHHHHh
Confidence 455666666666666666666666553
No 35
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=34.00 E-value=32 Score=18.26 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=12.9
Q ss_pred CccHHHHHHHHHHHH
Q 030977 67 NIDFKKELRSLNREL 81 (168)
Q Consensus 67 ~~D~k~ELkkL~~sl 81 (168)
++|...||-||++..
T Consensus 6 sydfadelakllrqa 20 (26)
T 1sn9_A 6 SYDFADELAKLLRQA 20 (26)
T ss_dssp TBCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHh
Confidence 689999999998863
No 36
>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva pertusa}
Probab=33.64 E-value=1.5e+02 Score=22.92 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 105 DISLIFKNLHHLLNSLRPHQARATLI-HILELQIQRRKQAVEDIKRRREEAQRR 157 (168)
Q Consensus 105 ~i~~l~iNmhhllNe~RPhQARetL~-~~le~Ql~~rr~~~~~ir~~~~~~~~~ 157 (168)
.+...+.++|.++.+-+=++.+.-|. ..|++|++. ++.+...++..+.+
T Consensus 137 ~v~~~l~~l~~lA~~~~D~~t~~fLe~~fL~EQve~----i~~l~~~l~~l~~~ 186 (204)
T 3vnx_A 137 LNFQKLQALQAIADKHKDAALCDFVEGGLLSEQVDA----VKEHAVYVSQLRRV 186 (204)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 35667778899998888899999998 799999874 45555555555543
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.48 E-value=2.4e+02 Score=24.42 Aligned_cols=35 Identities=11% Similarity=0.273 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030977 132 ILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLE 166 (168)
Q Consensus 132 ~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~~~~~~ 166 (168)
.|+.+++++++.+.++++.....++.+++-.+.++
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555556666666666666666666665555444
No 38
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.83 E-value=81 Score=19.55 Aligned_cols=28 Identities=21% Similarity=0.391 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 132 ILELQIQRRKQAVEDIKRRREEAQRRLK 159 (168)
Q Consensus 132 ~le~Ql~~rr~~~~~ir~~~~~~~~~L~ 159 (168)
.|+...++.+..++.+.+.+++.++.|.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555666666666666666655543
No 39
>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: a.25.1.1
Probab=32.48 E-value=1.6e+02 Score=22.16 Aligned_cols=48 Identities=13% Similarity=0.025 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 105 DISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQR 156 (168)
Q Consensus 105 ~i~~l~iNmhhllNe~RPhQARetL~~~le~Ql~~rr~~~~~ir~~~~~~~~ 156 (168)
.+...+.++|.++.+-+=++.+.-|...+++|++. ++.++..++..+.
T Consensus 105 ~v~~~l~~l~~la~~~~D~~t~~fLe~fl~EQve~----~~~l~~~l~~l~~ 152 (184)
T 3qz3_A 105 KITQQINKLAHVAFTSQDYSTFNFLQWYVAEQHEE----EKLFKGILDKLEL 152 (184)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 35566677888888888888899999999998874 4444555544443
No 40
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=32.38 E-value=75 Score=21.56 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 137 IQRRKQAVEDIKRRREEAQRRLKESL 162 (168)
Q Consensus 137 l~~rr~~~~~ir~~~~~~~~~L~~~~ 162 (168)
+++|+.++..++.++.+.++.|.+..
T Consensus 47 ~~~R~~~V~~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 47 LQSRRAAVSALETKLGELKRELADLI 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666665544
No 41
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=31.79 E-value=98 Score=19.51 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 103 VEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIK 148 (168)
Q Consensus 103 i~~i~~l~iNmhhllNe~RPhQARetL~~~le~Ql~~rr~~~~~ir 148 (168)
|.+|..||..|.+|+.+ -.+++.-.+..++.-...++.-.
T Consensus 18 i~eL~~iF~dla~lV~e------Qge~id~Ie~nv~~a~~~v~~g~ 57 (65)
T 1gl2_B 18 IMDINEIFKDLGMMIHE------QGDVIDSIEANVESAEVHVQQAN 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888887763 23344444444444444333333
No 42
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A
Probab=31.63 E-value=1.7e+02 Score=22.21 Aligned_cols=48 Identities=15% Similarity=0.075 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 106 ISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRR 157 (168)
Q Consensus 106 i~~l~iNmhhllNe~RPhQARetL~~~le~Ql~~rr~~~~~ir~~~~~~~~~ 157 (168)
+...+.++|.++.+-+=.+.+.-|...+++|++. ++.+...++.++.+
T Consensus 102 v~~~l~~l~~la~~~~D~~t~~fLe~fL~EQve~----~~~l~~~l~~l~~~ 149 (189)
T 3uno_A 102 VTDQVGRLTAVARDEGDFLGEQFMQWFLQEQIEE----VALMATLVRVADRA 149 (189)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 5666778888888888899999999999998874 44555555555443
No 43
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=30.90 E-value=96 Score=21.11 Aligned_cols=30 Identities=13% Similarity=0.050 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 129 LIHILELQIQRRKQAVEDIKRRREEAQRRL 158 (168)
Q Consensus 129 L~~~le~Ql~~rr~~~~~ir~~~~~~~~~L 158 (168)
...+|+.|++...++++++++..+..+..+
T Consensus 76 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 105 (109)
T 1r8d_A 76 RKAALQSQKEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888777766654
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.45 E-value=2.8e+02 Score=23.97 Aligned_cols=22 Identities=5% Similarity=0.051 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030977 124 QARATLIHILELQIQRRKQAVE 145 (168)
Q Consensus 124 QARetL~~~le~Ql~~rr~~~~ 145 (168)
|.++......++++++++++.+
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~ 540 (597)
T 3oja_B 519 AFKLRETQARRTEADAKQKETE 540 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhhhhcchh
Confidence 3333444444444444444444
No 45
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.18 E-value=1.4e+02 Score=20.34 Aligned_cols=33 Identities=12% Similarity=0.297 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 126 RATLIHILELQIQRRKQAVEDIKRRREEAQRRL 158 (168)
Q Consensus 126 RetL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L 158 (168)
.+.++..|+..++.....++.+.+.++..+..+
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l 100 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKL 100 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333333
No 46
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=28.05 E-value=1.2e+02 Score=19.27 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 130 IHILELQIQRRKQAVEDIKRRREE 153 (168)
Q Consensus 130 ~~~le~Ql~~rr~~~~~ir~~~~~ 153 (168)
..-|+.|+.+.+++...|++.+++
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888887775
No 47
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage, CAGE-like protein, plant, iron, metal-binding, oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A
Probab=27.76 E-value=2.1e+02 Score=22.12 Aligned_cols=47 Identities=17% Similarity=0.100 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 106 ISLIFKNLHHLLNSLRPHQARATLI-HILELQIQRRKQAVEDIKRRREEAQR 156 (168)
Q Consensus 106 i~~l~iNmhhllNe~RPhQARetL~-~~le~Ql~~rr~~~~~ir~~~~~~~~ 156 (168)
+...+.++|.++.+-+=++.+.-|. ..+++|++.- +.+...++..+.
T Consensus 143 v~~~l~~l~~~A~~~~D~~t~~fLe~~fL~EQve~~----~~l~~~l~~l~~ 190 (212)
T 3a68_A 143 TNEKLLNLHSVATKNGDVQLADFVETEYLGEQVEAI----KRISEYVAQLRR 190 (212)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 5566778899998889999999998 9999998754 334444444443
No 48
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=27.74 E-value=1.3e+02 Score=23.69 Aligned_cols=28 Identities=7% Similarity=0.375 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 132 ILELQIQRRKQAVEDIKRRREEAQRRLK 159 (168)
Q Consensus 132 ~le~Ql~~rr~~~~~ir~~~~~~~~~L~ 159 (168)
+|..|++.|..+|+.+++.++.+++...
T Consensus 31 ~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 31 VLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5666777777777777777666665553
No 49
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.98 E-value=3.1e+02 Score=23.74 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 127 ATLIHILELQIQRRKQAVEDIKRRREEAQRRLK 159 (168)
Q Consensus 127 etL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~ 159 (168)
|+++.-.+.+|+..++.++..++.++..+..+.
T Consensus 97 e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~ 129 (409)
T 1m1j_C 97 ENTILAHENTIQQLTDMHIMNSNKITQLKQKIA 129 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444555555444455555554444443
No 50
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=26.95 E-value=79 Score=21.45 Aligned_cols=28 Identities=7% Similarity=0.330 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 133 LELQIQRRKQAVEDIKRRREEAQRRLKE 160 (168)
Q Consensus 133 le~Ql~~rr~~~~~ir~~~~~~~~~L~~ 160 (168)
|..+|++++++|..++......++++..
T Consensus 39 Lh~~ie~~~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 39 LHKEIEQKDSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777665555544443
No 51
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=26.82 E-value=54 Score=22.67 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=25.8
Q ss_pred cHHHHH---HHHHHHHHHHHHHHHHHHhcCCch
Q 030977 69 DFKKEL---RSLNRELQLHILELSDVLVERPSQ 98 (168)
Q Consensus 69 D~k~EL---kkL~~sll~~fleLl~~l~~~P~~ 98 (168)
...++| +++-+.+...+.++++.|..+|-.
T Consensus 20 ~A~kdl~~w~kldk~~~krI~~~I~~l~~nP~~ 52 (96)
T 3oei_C 20 DAWEDFLFWLAADRKTARRITRLIGEIQRDPFS 52 (96)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhCCCc
Confidence 456777 899999999999999999999853
No 52
>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A
Probab=26.82 E-value=1.8e+02 Score=22.22 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 105 DISLIFKNLHHLLNSLRPHQARATLI-HILELQIQRRKQAVEDIKRRREEAQRR 157 (168)
Q Consensus 105 ~i~~l~iNmhhllNe~RPhQARetL~-~~le~Ql~~rr~~~~~ir~~~~~~~~~ 157 (168)
.+...+.++|.++.+-+=++.+.-|. ..+++|++ +++.+...++..+.+
T Consensus 106 ~v~~~l~~l~~la~~~~D~~t~~fLe~~fL~EQve----~i~~l~~~l~~l~~~ 155 (191)
T 3kxu_A 106 KLNQALLDLHALGSARTDPHLCDFLETHFLDEEVK----LIKKMGDHLTNLHRL 155 (191)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHH----HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 46667778899998888999999998 59999986 445555555555443
No 53
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=26.59 E-value=92 Score=22.55 Aligned_cols=30 Identities=13% Similarity=0.313 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---cCCchH
Q 030977 70 FKKELRSLNRELQLHILELSDVLV---ERPSQY 99 (168)
Q Consensus 70 ~k~ELkkL~~sll~~fleLl~~l~---~~P~~~ 99 (168)
...|+...-..|..+--.|-+.-. .+|++.
T Consensus 27 Lq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDev 59 (113)
T 4fi5_A 27 LQREINAHEGQLVIARQKVRDAEKQYEKDPDEL 59 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 346666666666666666655332 355543
No 54
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=26.56 E-value=1.3e+02 Score=19.19 Aligned_cols=48 Identities=23% Similarity=0.406 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 103 VEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQR 156 (168)
Q Consensus 103 i~~i~~l~iNmhhllNe~RPhQARetL~~~le~Ql~~rr~~~~~ir~~~~~~~~ 156 (168)
|.+|..||.-|..|+.+ -.+++.-++..++.-...++.-...+.+|..
T Consensus 15 i~eL~~iF~dla~lV~e------Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~~ 62 (71)
T 2nps_B 15 ILDVNQIFKDLAMMIHD------QGDLIDSIEANVESSEVHVERASDQLQRAAY 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888889888888773 3455666666666666655555555555543
No 55
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A
Probab=26.34 E-value=2e+02 Score=21.24 Aligned_cols=48 Identities=8% Similarity=0.092 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 106 ISLIFKNLHHLLNSLRPHQARATLI-HILELQIQRRKQAVEDIKRRREEAQRR 157 (168)
Q Consensus 106 i~~l~iNmhhllNe~RPhQARetL~-~~le~Ql~~rr~~~~~ir~~~~~~~~~ 157 (168)
+...+.++|.++.+-+=++.+.-|. ..+++|++.- +.+...++..+.+
T Consensus 107 v~~~l~~l~~~a~~~~D~~t~~fLe~~~l~eq~e~~----~~l~~~l~~l~~~ 155 (173)
T 1rcd_A 107 VNQALLDLHAVAADKSDPHMTDFLESPYLSESVETI----KKLGDHITSLKKL 155 (173)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHTTHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 5556778888888889999999998 9999998754 4444445544443
No 56
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=26.32 E-value=2e+02 Score=21.27 Aligned_cols=87 Identities=9% Similarity=0.163 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHHHHHH----------HHHHHHH--------HhcCCch---------------HHHHHHHHHHHHHHHHH
Q 030977 69 DFKKELRSLNRELQLH----------ILELSDV--------LVERPSQ---------------YARRVEDISLIFKNLHH 115 (168)
Q Consensus 69 D~k~ELkkL~~sll~~----------fleLl~~--------l~~~P~~---------------~~~ki~~i~~l~iNmhh 115 (168)
|....|.+++..++.. |++.++. ++.+|-+ ..+-+.|+++||.|..-
T Consensus 25 d~~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~ 104 (158)
T 3uv4_A 25 DDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVK 104 (158)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5567777777777654 6655542 1223321 34568999999999764
Q ss_pred HHhc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 116 LLNS--LRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQR 156 (168)
Q Consensus 116 llNe--~RPhQARetL~~~le~Ql~~rr~~~~~ir~~~~~~~~ 156 (168)
- |. -.-+++=..|....+..+++.++.+.++.+.+.++++
T Consensus 105 y-N~~~s~i~~~A~~L~~~~~~~l~e~~~~l~~le~~i~~~~e 146 (158)
T 3uv4_A 105 Y-NGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKE 146 (158)
T ss_dssp H-HCTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCC
T ss_pred H-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 43 2245555667777778887777777777776666543
No 57
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=26.15 E-value=1.3e+02 Score=20.54 Aligned_cols=28 Identities=14% Similarity=0.353 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 133 LELQIQRRKQAVEDIKRRREEAQRRLKE 160 (168)
Q Consensus 133 le~Ql~~rr~~~~~ir~~~~~~~~~L~~ 160 (168)
|..+|+.+++++..+++..++.+++...
T Consensus 51 Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777766543
No 58
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A
Probab=26.11 E-value=2.1e+02 Score=21.43 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 105 DISLIFKNLHHLLNSLRPHQARATLI-HILELQIQRRKQAVEDIKRRREEAQR 156 (168)
Q Consensus 105 ~i~~l~iNmhhllNe~RPhQARetL~-~~le~Ql~~rr~~~~~ir~~~~~~~~ 156 (168)
.+...+.++|.++.+-+=++.+.-|. ..+++|++. ++.+...++..+.
T Consensus 110 ~v~~~l~~l~~~a~~~~D~~t~~fLe~~fl~eq~e~----~~~l~~~l~~l~~ 158 (183)
T 2cih_A 110 NVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKA----IKELGDHVTNLRK 158 (183)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 35566778888888889999999999 799999874 4445555555444
No 59
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=25.91 E-value=1.2e+02 Score=24.41 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 130 IHILELQIQRRKQAVEDIKRRREEAQRRLKESL 162 (168)
Q Consensus 130 ~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~~ 162 (168)
..+|+..+++.+++...+++++.+|+..++++-
T Consensus 180 l~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 180 CHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLR 212 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888888888777653
No 60
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=25.74 E-value=1.3e+02 Score=21.80 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030977 131 HILELQIQRRKQAVEDIKRRREEAQRRLKESLGT 164 (168)
Q Consensus 131 ~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~~~~ 164 (168)
..+++|+++.++..+.|...++..++.+...-+.
T Consensus 91 ~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~ 124 (142)
T 3gp4_A 91 IELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEE 124 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666655554443
No 61
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.72 E-value=1.5e+02 Score=19.77 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030977 124 QARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 165 (168)
Q Consensus 124 QARetL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~~~~~ 165 (168)
|-.+.+...++..++.....++.+.+.++..+..+++.-..|
T Consensus 61 ~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 61 VAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666666655555544443
No 62
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=25.55 E-value=1.2e+02 Score=18.51 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030977 141 KQAVEDIKRRREEAQRRLKESLGTLE 166 (168)
Q Consensus 141 r~~~~~ir~~~~~~~~~L~~~~~~~~ 166 (168)
++.++.+++.++++..-++.+-..|+
T Consensus 27 gEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 27 KEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 44445555555555555555444443
No 63
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=24.98 E-value=1.1e+02 Score=21.46 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030977 123 HQARATLIHILELQIQRRKQ 142 (168)
Q Consensus 123 hQARetL~~~le~Ql~~rr~ 142 (168)
.|+|...+..++.-|.+.+.
T Consensus 47 ~~~R~~~V~~lq~Ki~elkr 66 (96)
T 2ic9_A 47 LQSRRAAVSALETKLGELKR 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555555555554444333
No 64
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 4das_A* 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A
Probab=24.91 E-value=2.1e+02 Score=21.20 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 105 DISLIFKNLHHLLNSLRPHQARATLI-HILELQIQRRKQAVEDIKRRREEAQR 156 (168)
Q Consensus 105 ~i~~l~iNmhhllNe~RPhQARetL~-~~le~Ql~~rr~~~~~ir~~~~~~~~ 156 (168)
.+...+.++|.++.+-+=++.+.-|. ..+++|++. ++.+...++..+.
T Consensus 106 ~v~~~l~~l~~la~~~~D~~t~~fLe~~fl~eQve~----~~~l~~~l~~l~~ 154 (176)
T 3ka8_A 106 TVNQALLDLHKLATDKVDPHLCDFLESEYLEEQVKH----IKRIGDFITNLKR 154 (176)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 36666778888888888899999998 499999874 4455555555544
No 65
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=24.28 E-value=1.2e+02 Score=20.62 Aligned_cols=32 Identities=6% Similarity=0.063 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 128 TLIHILELQIQRRKQAVEDIKRRREEAQRRLK 159 (168)
Q Consensus 128 tL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~ 159 (168)
....+|+.|++...++++++++..+..+..++
T Consensus 74 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 105 (108)
T 2vz4_A 74 DPRAHLRRQHELLSARIGKLQKMAAAVEQAME 105 (108)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888888888888887776654
No 66
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=24.14 E-value=55 Score=21.83 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhcc
Q 030977 80 ELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120 (168)
Q Consensus 80 sll~~fleLl~~l~~~P~~~~~ki~~i~~l~iNmhhllNe~ 120 (168)
..-..||+++.......-+..+-++.+..||-+=.+||.++
T Consensus 29 ~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf~~hpdLi~gF 69 (80)
T 2cr7_A 29 ATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGF 69 (80)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 45556777777666666667788999999999888888765
No 67
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=24.14 E-value=1.4e+02 Score=19.80 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 134 ELQIQRRKQAVEDIKRRREEAQRRLKESL 162 (168)
Q Consensus 134 e~Ql~~rr~~~~~ir~~~~~~~~~L~~~~ 162 (168)
++||.+.+..+..+...+++++.+|....
T Consensus 46 RE~l~~~~~~l~~~d~~l~~s~k~l~~M~ 74 (81)
T 2nps_C 46 RERIQRARERLRETDANLGKSSRILTGML 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHhHHhHHHHHHHHHHHHH
Confidence 45566666666666666666666666543
No 68
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.95 E-value=2.1e+02 Score=20.81 Aligned_cols=23 Identities=4% Similarity=0.306 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030977 136 QIQRRKQAVEDIKRRREEAQRRL 158 (168)
Q Consensus 136 Ql~~rr~~~~~ir~~~~~~~~~L 158 (168)
|+++.+.+|..+.+.+.++.+-+
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~ 94 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEV 94 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555444433
No 69
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=23.78 E-value=1.6e+02 Score=19.35 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 103 VEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEA 154 (168)
Q Consensus 103 i~~i~~l~iNmhhllNe~RPhQARetL~~~le~Ql~~rr~~~~~ir~~~~~~ 154 (168)
|.+|..||.-|.+|+.+ -.+++...+..++.-...++.-...+.+|
T Consensus 30 i~eL~~iF~dla~lV~e------Qge~id~Ie~nv~~a~~~v~~g~~eL~kA 75 (83)
T 1sfc_B 30 IRELHDMFMDMAMLVES------QGEMIDRIEYNVEHAVDYVERAVSDTKKA 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888763 34455555555555544444444444443
No 70
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=23.76 E-value=1.6e+02 Score=21.32 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=27.3
Q ss_pred ccChHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030977 119 SLRPHQARATLI---HILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 165 (168)
Q Consensus 119 e~RPhQARetL~---~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~~~~~ 165 (168)
++-.-+|.+.|. ..++.+++.-.+.++.+++.+..+...|.+.....
T Consensus 93 E~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~ 142 (151)
T 2zdi_C 93 ERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQ 142 (151)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555443 34556666666666666666666666666655443
No 71
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=22.91 E-value=1.8e+02 Score=19.75 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 030977 71 KKELRSLNRELQLHILELSDVLVERPSQYARRVEDI 106 (168)
Q Consensus 71 k~ELkkL~~sll~~fleLl~~l~~~P~~~~~ki~~i 106 (168)
|.+|+-||.- +++|++=|..|-..-..-..+|+.+
T Consensus 8 Ke~mq~LNdR-lAsyIdKVR~LEqqN~~Le~~i~~l 42 (93)
T 3s4r_A 8 KVELQELNDR-FANLIDKVRFLEQQNKILLAELEQL 42 (93)
T ss_dssp CCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888877 4588888777654433334444433
No 72
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=22.37 E-value=2.4e+02 Score=20.95 Aligned_cols=106 Identities=19% Similarity=0.237 Sum_probs=49.6
Q ss_pred cccccccCCCCCCccHHHHHHHHHHHHHHHHHHHHH---HHhcCCch-----------HHHHHHHHHHHHHHHHHHHhcc
Q 030977 55 EQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSD---VLVERPSQ-----------YARRVEDISLIFKNLHHLLNSL 120 (168)
Q Consensus 55 ~~gi~~Ly~~~~~~D~k~ELkkL~~sll~~fleLl~---~l~~~P~~-----------~~~ki~~i~~l~iNmhhllNe~ 120 (168)
+.|-+.+|=.+..--...||-+++.+|=-+..--.. -++.=|.+ ..+..+.+...+--.-.+|++|
T Consensus 8 ~~~~~~~~~~~~~p~~~~elik~L~~le~sassDa~vrq~Ia~LP~eVsd~s~l~klkDk~~~e~l~~~veeA~~~L~eY 87 (152)
T 4fla_A 8 SSGRENLYFQGAGPLLTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEY 87 (152)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGTCGGGGGGCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHcCCccccCHHHHHHcccHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554332111235665555555443332222 23333432 2345677777777777777776
Q ss_pred ChH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 121 RPH-----QARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKE 160 (168)
Q Consensus 121 RPh-----QARetL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~ 160 (168)
=-. --|.+|+.||+.=...-++.+.+.+..+++.++.+..
T Consensus 88 n~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~r 132 (152)
T 4fla_A 88 NGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 3456677777765555555555555555555555444
No 73
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=21.93 E-value=1.7e+02 Score=23.46 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhcc
Q 030977 80 ELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120 (168)
Q Consensus 80 sll~~fleLl~~l~~~P~~~~~ki~~i~~l~iNmhhllNe~ 120 (168)
++...|-+-|+.--..-+.......+|....-.+--+|...
T Consensus 22 ~iF~~~~~~Ld~~~d~REriik~sRdIt~~sk~~I~~Lhr~ 62 (249)
T 3axj_A 22 DIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQII 62 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44455555555433223333334445555555555455433
No 74
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=21.87 E-value=4.4e+02 Score=24.67 Aligned_cols=83 Identities=16% Similarity=0.199 Sum_probs=49.6
Q ss_pred ccHHHHHH-HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH---------HHHHH--
Q 030977 68 IDFKKELR-SLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLI---------HILEL-- 135 (168)
Q Consensus 68 ~D~k~ELk-kL~~sll~~fleLl~~l~~~P~~~~~ki~~i~~l~iNmhhllNe~RPhQARetL~---------~~le~-- 135 (168)
.|-+.|.. -..+.|+.+|+..+. ..|.|+-= -.=||.++|.-+-.=..|-|- .||++
T Consensus 671 ~~~q~~~q~e~~~~l~~sy~~iv~----------k~~~d~~p-k~im~~~vn~~k~~~~~el~~~ly~~~~~~~lm~Es~ 739 (772)
T 3zvr_A 671 MDPQLERQVETIRNLVDSYMAIVN----------KTVRDLMP-KTIMHLMINNTKEFIFSELLANLYSCGDQNTLMEESA 739 (772)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH-HHHHHHTHHHHHHHHHHTHHHHHHHTCCTTTTTCCCH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHhcCH
Confidence 45555554 567788888888876 34444432 233666677544333333333 33433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 136 QIQRRKQAVEDIKRRREEAQRRLKES 161 (168)
Q Consensus 136 Ql~~rr~~~~~ir~~~~~~~~~L~~~ 161 (168)
-+.+||+++.++-.+|.+|-.++.+.
T Consensus 740 ~~~~~r~~~~~~~~~l~~a~~ii~~i 765 (772)
T 3zvr_A 740 EQAQRRDEMLRMYHALKEALSIIGDI 765 (772)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35678888888899999998888764
No 75
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=21.73 E-value=2.1e+02 Score=19.97 Aligned_cols=39 Identities=13% Similarity=0.190 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 123 HQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKES 161 (168)
Q Consensus 123 hQARetL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~ 161 (168)
.|.-.....-|+..|++...+|+.|.....+++-+-.++
T Consensus 42 c~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA 80 (96)
T 1t3j_A 42 CQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKA 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344555667788888888888888888877777655543
No 76
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=21.56 E-value=1.7e+02 Score=21.37 Aligned_cols=33 Identities=6% Similarity=0.047 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 127 ATLIHILELQIQRRKQAVEDIKRRREEAQRRLK 159 (168)
Q Consensus 127 etL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~ 159 (168)
+.+..+++.|+++-.++++++++..+.....+.
T Consensus 89 ~~~~~ll~~~~~~l~~qi~~L~~~~~~L~~~~~ 121 (154)
T 2zhg_A 89 KEWKQLSSQWREELDRRIHTLVALRDELDGCIG 121 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677777777777777777776666664
No 77
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=21.53 E-value=1.3e+02 Score=17.43 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 133 LELQIQRRKQAVEDIKRRREEAQRRLKES 161 (168)
Q Consensus 133 le~Ql~~rr~~~~~ir~~~~~~~~~L~~~ 161 (168)
|+..+++....-..+...+.+.++++.+|
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll~~~ 34 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKNAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 44455555555566666777777777665
No 78
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=21.37 E-value=2.6e+02 Score=20.89 Aligned_cols=57 Identities=18% Similarity=0.111 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHhccChH---HHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Q 030977 101 RRVEDISLIFKNLHHLLNSLRPH---QARATLIHILELQI---------------QRRKQAVEDIKRRREEAQRR 157 (168)
Q Consensus 101 ~ki~~i~~l~iNmhhllNe~RPh---QARetL~~~le~Ql---------------~~rr~~~~~ir~~~~~~~~~ 157 (168)
.+|.++..-+-.+.--++.|... -....|..||.+|+ ..||+.+..|+..++..+..
T Consensus 34 ~aI~~V~~eVd~L~~eV~~F~G~~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aRK~aVk~VQ~~Le~LD~k 108 (142)
T 3a8y_C 34 KAVWNVLGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQAVRLAQNILSYLDLK 108 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCTTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444333 44555556665554 35666666666666665543
No 79
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=21.22 E-value=41 Score=17.82 Aligned_cols=7 Identities=86% Similarity=1.815 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 030977 29 PPPPIEG 35 (168)
Q Consensus 29 Pp~P~~g 35 (168)
||||+-|
T Consensus 13 ppppi~g 19 (26)
T 2bn5_B 13 PPPPILG 19 (26)
T ss_dssp CCCSCCC
T ss_pred CCCCccc
Confidence 3444433
No 80
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=21.01 E-value=1.5e+02 Score=21.90 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCC
Q 030977 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ 168 (168)
Q Consensus 121 RPhQARetL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~~~~~~~~ 168 (168)
|.-||+.++ ..|++|..+|.+|.+.+.++..++.+...-+.+|
T Consensus 153 ~~~~~~~~l-----~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~Q 195 (196)
T 1fio_A 153 RRGEAKTAL-----AEVQARHQELLKLEKSMAELTQLFNDMEELVIEQ 195 (196)
T ss_dssp ---CHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred chHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 81
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=20.89 E-value=3.4e+02 Score=22.09 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHhcCCchHHHHHHHHHHHHHHHHHHHh
Q 030977 71 KKELRSLNRELQLHILELS---DVLVERPSQYARRVEDISLIFKNLHHLLN 118 (168)
Q Consensus 71 k~ELkkL~~sll~~fleLl---~~l~~~P~~~~~ki~~i~~l~iNmhhllN 118 (168)
..|+++|++|++ .|-++. +.++.+-+-.+...+.|..+.-.|+..|.
T Consensus 8 ekEiR~l~Ra~~-kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c~ 57 (270)
T 2xb0_X 8 ESEVRALYKAIL-KFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAK 57 (270)
T ss_dssp HHHHHHHHHHHH-HHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 689999999986 676544 44444433334446666666666666664
No 82
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ...
Probab=20.79 E-value=2.6e+02 Score=20.59 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 106 ISLIFKNLHHLLNSLRPHQARATLIH-ILELQIQRRKQAVEDIKRRREEAQRR 157 (168)
Q Consensus 106 i~~l~iNmhhllNe~RPhQARetL~~-~le~Ql~~rr~~~~~ir~~~~~~~~~ 157 (168)
+...+.++|.++.+-+=+..+.-|.. .+++|++. ++.+...++..+.+
T Consensus 106 v~~~l~~l~~~a~~~~D~~t~~fLe~~~l~eq~e~----~~~l~~~l~~l~~~ 154 (174)
T 2v2p_A 106 LNQALLDLHALGSAQADPHLCDFLESHFLDEEVKL----IKKMGDHLTNIQRL 154 (174)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 55566788888888888899999887 89988875 34444445444443
No 83
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A
Probab=20.72 E-value=2.6e+02 Score=20.59 Aligned_cols=46 Identities=9% Similarity=0.044 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 106 ISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQ 155 (168)
Q Consensus 106 i~~l~iNmhhllNe~RPhQARetL~~~le~Ql~~rr~~~~~ir~~~~~~~ 155 (168)
+...+.++|.++.+-+=+.++.-|...+++|++.- +.+...++..+
T Consensus 99 v~~~~~~l~~~a~~~~D~~t~~fle~~l~eq~e~~----~~l~~~l~~l~ 144 (173)
T 1s3q_A 99 VTKRIHELVEMAMQEKDFATYNFLQWYVAEQVEEE----ASALDIVEKLR 144 (173)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 45556678888887788889999988888888744 34444444443
No 84
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=20.69 E-value=2.2e+02 Score=19.88 Aligned_cols=44 Identities=16% Similarity=0.119 Sum_probs=23.7
Q ss_pred ccChHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 119 SLRPHQARATLI---HILELQIQRRKQAVEDIKRRREEAQRRLKESL 162 (168)
Q Consensus 119 e~RPhQARetL~---~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~~ 162 (168)
++-.-+|.+.|. ..++.+++.-.+.++.+++.+..+.+.|.+..
T Consensus 83 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 83 KKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555553 23445555555666666666665555555443
No 85
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.33 E-value=1.6e+02 Score=20.12 Aligned_cols=26 Identities=8% Similarity=0.335 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 133 LELQIQRRKQAVEDIKRRREEAQRRL 158 (168)
Q Consensus 133 le~Ql~~rr~~~~~ir~~~~~~~~~L 158 (168)
|.++++.+++++..+++..++.+++-
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655555443
No 86
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=20.25 E-value=71 Score=21.05 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhcc
Q 030977 80 ELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120 (168)
Q Consensus 80 sll~~fleLl~~l~~~P~~~~~ki~~i~~l~iNmhhllNe~ 120 (168)
..-..||+++.......-+..+-++.++.||-+=.+||.++
T Consensus 23 ~~Y~~FL~im~~~k~~~~~~~~v~~rv~~Lf~~hpdLi~gF 63 (77)
T 2czy_A 23 ATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGF 63 (77)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 34456666666666666677788899999998888887654
No 87
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=20.24 E-value=2.2e+02 Score=19.52 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 030977 83 LHILELSDVLVERPSQYARRVEDISLIFK 111 (168)
Q Consensus 83 ~~fleLl~~l~~~P~~~~~ki~~i~~l~i 111 (168)
..|++-++.+-..=......|+.|..+.-
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~ 36 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKRKHS 36 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333333333444444444444
No 88
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=20.21 E-value=2.2e+02 Score=19.67 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 103 VEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQ 155 (168)
Q Consensus 103 i~~i~~l~iNmhhllNe~RPhQARetL~~~le~Ql~~rr~~~~~ir~~~~~~~ 155 (168)
+.+|..+|.-|.+++.+ -..++..++..++.....+++=.+.+.+|.
T Consensus 30 I~eL~~iF~dla~lV~e------Qge~Id~Ie~nv~~a~~~v~~g~~eL~kA~ 76 (109)
T 3hd7_B 30 IRELHDMFMDMAMLVES------QGEMIDRIEYNVEHAVDYVERAVSDTKKAV 76 (109)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777653 335555556666655555555555554443
No 89
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=20.13 E-value=2.7e+02 Score=20.53 Aligned_cols=27 Identities=11% Similarity=0.193 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977 129 LIHILELQIQRRKQAVEDIKRRREEAQ 155 (168)
Q Consensus 129 L~~~le~Ql~~rr~~~~~ir~~~~~~~ 155 (168)
+..-|+.-+.+-...+..|+..++..+
T Consensus 79 ~k~~le~l~~~i~~~a~~ik~~Lk~l~ 105 (180)
T 1s94_A 79 MKEELEELMTDIKRTANKVRGKLKTIE 105 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444443
Done!