BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030980
(168 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255578727|ref|XP_002530222.1| exosome complex exonuclease rrp42, putative [Ricinus communis]
gi|223530269|gb|EEF32169.1| exosome complex exonuclease rrp42, putative [Ricinus communis]
Length = 287
Score = 287 bits (735), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 143/165 (86%), Positives = 150/165 (90%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+VIASVKAELGRP+A QPDKGKVAIFVDCSP AEPTFE RGGEELSAELS+ALQHC
Sbjct: 51 IGATEVIASVKAELGRPNAFQPDKGKVAIFVDCSPVAEPTFEARGGEELSAELSAALQHC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGAGIDLSSLVV EGK+CWDLYIDGLV+S DGNLLDALGAAIKAALSNTGIP
Sbjct: 111 LLGGKSGAGAGIDLSSLVVAEGKICWDLYIDGLVVSFDGNLLDALGAAIKAALSNTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
VHVAA DEQPEVDISDEEFLQFDTSGVPVI TLTKV IV
Sbjct: 171 VHVAAGGLGDEQPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIV 215
>gi|224131852|ref|XP_002321194.1| predicted protein [Populus trichocarpa]
gi|222861967|gb|EEE99509.1| predicted protein [Populus trichocarpa]
Length = 287
Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 142/165 (86%), Positives = 151/165 (91%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+VIASVKAELGRP+A+QPDKGKVAIFVDCSP AEP FEGRGGEELSAELS ALQ C
Sbjct: 51 IGATEVIASVKAELGRPNALQPDKGKVAIFVDCSPVAEPMFEGRGGEELSAELSVALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGAGIDLSSL+V EGK+CWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP
Sbjct: 111 LLGGKSGAGAGIDLSSLIVAEGKICWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPR 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V VAA A+ DEQPEVDISDEEF+QFDTSGVPVI TLTKV IV
Sbjct: 171 VQVAAGASGDEQPEVDISDEEFMQFDTSGVPVIVTLTKVGRHYIV 215
>gi|356498705|ref|XP_003518190.1| PREDICTED: exosome complex component RRP42-like [Glycine max]
Length = 286
Score = 278 bits (710), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 135/165 (81%), Positives = 150/165 (90%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG+TDVIASVKAELG+PS +QPDKGKV+I++DCS TAEP FEGRGG+EL+AELS+ALQHC
Sbjct: 51 MGATDVIASVKAELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDELAAELSNALQHC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSG GAGIDLSSL+VVEGK+CWDLYIDGLV+SSDGNLLDALGAAIKAALSNTGIP
Sbjct: 111 LLGGKSGEGAGIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPR 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V VAA ++DE PEVD+SDEEFLQFDTS VPVI TLTKV IV
Sbjct: 171 VEVAAGTSNDEHPEVDVSDEEFLQFDTSRVPVIVTLTKVGRHYIV 215
>gi|356559534|ref|XP_003548054.1| PREDICTED: exosome complex component RRP42-like [Glycine max]
Length = 286
Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 136/165 (82%), Positives = 150/165 (90%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG+TDVIASVKAELG+PS +QPDKGKV+I+VDCS TAEP FEGRGG+EL+AELS+ALQ C
Sbjct: 51 MGATDVIASVKAELGKPSLLQPDKGKVSIYVDCSSTAEPAFEGRGGDELAAELSNALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGAGIDLSSL+VVEGK+CWDLYIDGLV+SSDGNLLDALGAAIKAALSNTGIP
Sbjct: 111 LLGGKSGAGAGIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPR 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V VAA ++DE PEVD+SDEEFLQFDTS VPVI TLTKV IV
Sbjct: 171 VQVAAGTSNDEHPEVDVSDEEFLQFDTSRVPVIVTLTKVGRHYIV 215
>gi|449477436|ref|XP_004155022.1| PREDICTED: exosome complex component RRP42-like [Cucumis sativus]
Length = 286
Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 136/165 (82%), Positives = 149/165 (90%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T+VIA+VKAELGRP+ MQPDKGKV+I VDCSPTAEP FEGRGGEELS ELS AL+ C
Sbjct: 51 MGGTEVIATVKAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSG+GAGIDLSSL+VVEGK+CWDLYI+GLV+SS+GNLLDALGAAIKAALSNTGIP
Sbjct: 111 LLGGKSGSGAGIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
VHVAAEA +EQPEVD+SDEEFLQFDTSGVP I TLTKV IV
Sbjct: 171 VHVAAEALDNEQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIV 215
>gi|297829330|ref|XP_002882547.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328387|gb|EFH58806.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 287
Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 134/165 (81%), Positives = 150/165 (90%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDVIASVKAE+GRPS++QPDKGKVA+F+DCSPTAEPTF GRGGEELS+EL+ ALQ C
Sbjct: 51 IGGTDVIASVKAEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGAGI+LSSL++ EGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL+NT IP
Sbjct: 111 LLGGKSGAGAGINLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V+V+AE A DEQPE+DISDEE+LQFDTS VPVI TLTKV IV
Sbjct: 171 VNVSAEVADDEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIV 215
>gi|18398046|ref|NP_566318.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
gi|30680427|ref|NP_850537.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
gi|11762184|gb|AAG40370.1|AF325018_1 AT3g07750 [Arabidopsis thaliana]
gi|26453010|dbj|BAC43581.1| putative 3' exoribonuclease [Arabidopsis thaliana]
gi|56744222|gb|AAW28551.1| At3g07750 [Arabidopsis thaliana]
gi|332641077|gb|AEE74598.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
gi|332641078|gb|AEE74599.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
Length = 286
Score = 275 bits (704), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 134/165 (81%), Positives = 150/165 (90%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDVIASVKAE+GRPS++QPDKGKVA+F+DCSPTAEPTF GRGGEELS+EL+ ALQ C
Sbjct: 50 IGGTDVIASVKAEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGAGI+LSSL++ EGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL+NT IP
Sbjct: 110 LLGGKSGAGAGINLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPK 169
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V+V+AE A DEQPE+DISDEE+LQFDTS VPVI TLTKV IV
Sbjct: 170 VNVSAEVADDEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIV 214
>gi|225430430|ref|XP_002285435.1| PREDICTED: exosome complex component RRP42 [Vitis vinifera]
gi|296082105|emb|CBI21110.3| unnamed protein product [Vitis vinifera]
Length = 287
Score = 271 bits (694), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 137/165 (83%), Positives = 145/165 (87%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDVIASVKAELG+PS QPDKGKV I+VDCSPTA P FEGRGGEELS ELS ALQHC
Sbjct: 51 LGGTDVIASVKAELGKPSPSQPDKGKVNIYVDCSPTAAPMFEGRGGEELSTELSGALQHC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLV+SSDGNLLDALGAAIKAAL+NTGIP
Sbjct: 111 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVVSSDGNLLDALGAAIKAALTNTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V VA A+ D PEVDISD+E+LQFDTSGVPVI TLTKV IV
Sbjct: 171 VEVAVGASGDGLPEVDISDDEYLQFDTSGVPVIVTLTKVGRHYIV 215
>gi|195620544|gb|ACG32102.1| exosome complex exonuclease RRP42 [Zea mays]
gi|413935080|gb|AFW69631.1| exosome complex exonuclease RRP42 isoform 1 [Zea mays]
gi|413935081|gb|AFW69632.1| exosome complex exonuclease RRP42 isoform 2 [Zea mays]
gi|413935082|gb|AFW69633.1| exosome complex exonuclease RRP42 isoform 3 [Zea mays]
gi|413935083|gb|AFW69634.1| exosome complex exonuclease RRP42 isoform 4 [Zea mays]
Length = 287
Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 133/165 (80%), Positives = 147/165 (89%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+TD+IASVKAELG+PS + PDKGKVAIFVDCSPTAEP FEGRG EELSAELS +LQ C
Sbjct: 51 LGATDIIASVKAELGKPSILHPDKGKVAIFVDCSPTAEPLFEGRGSEELSAELSVSLQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGA IDLSSL+VV+GKVCWDLYIDGLV+SSDGNLLDAL AIK ALS+TGIP
Sbjct: 111 LLGGKSGAGAAIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V+V+ AASDE+PEVD+SDEEFLQFDTSGVPVI TLTKV IV
Sbjct: 171 VNVSVSAASDEEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIV 215
>gi|242097164|ref|XP_002439072.1| hypothetical protein SORBIDRAFT_10g031070 [Sorghum bicolor]
gi|241917295|gb|EER90439.1| hypothetical protein SORBIDRAFT_10g031070 [Sorghum bicolor]
Length = 286
Score = 269 bits (687), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 132/165 (80%), Positives = 147/165 (89%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T++IASVKAELG+PS + PDKGKV+IFVDCSPTAEP FEGRG EELSAELS +LQ C
Sbjct: 51 LGATEIIASVKAELGKPSILHPDKGKVSIFVDCSPTAEPMFEGRGSEELSAELSVSLQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGA IDLSSL+VVEGKVCWDLYIDGLV+SSDGNLLDAL AAIK ALS+TGIP
Sbjct: 111 LLGGKSGAGAAIDLSSLIVVEGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V+V+ AASDE+PEVD+SDEEFLQFDTS VPVI TLTKV IV
Sbjct: 171 VNVSVNAASDEEPEVDVSDEEFLQFDTSSVPVIITLTKVGRHYIV 215
>gi|363543527|ref|NP_001241774.1| exosome complex exonuclease RRP42 [Zea mays]
gi|195636336|gb|ACG37636.1| exosome complex exonuclease RRP42 [Zea mays]
Length = 287
Score = 269 bits (687), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 132/165 (80%), Positives = 147/165 (89%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T++IASVKAELG+PS + PDKGKVAIFVDCSPTAEP FEGRG EELSAELS +LQ C
Sbjct: 51 LGATEIIASVKAELGKPSILHPDKGKVAIFVDCSPTAEPLFEGRGSEELSAELSVSLQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGA IDLSSL+VV+GKVCWDLYIDGLV+SSDGNLLDAL AIK ALS+TGIP
Sbjct: 111 LLGGKSGAGAAIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V+V+ AASDE+PEVD+SDEEFLQFDTSGVPVI TLTKV IV
Sbjct: 171 VNVSVSAASDEEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIV 215
>gi|194707850|gb|ACF88009.1| unknown [Zea mays]
gi|223975603|gb|ACN31989.1| unknown [Zea mays]
gi|413935071|gb|AFW69622.1| exosome complex exonuclease RRP42 isoform 1 [Zea mays]
gi|413935072|gb|AFW69623.1| exosome complex exonuclease RRP42 isoform 2 [Zea mays]
gi|413935073|gb|AFW69624.1| exosome complex exonuclease RRP42 isoform 3 [Zea mays]
Length = 287
Score = 269 bits (687), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 132/165 (80%), Positives = 147/165 (89%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T++IASVKAELG+PS + PDKGKVAIFVDCSPTAEP FEGRG EELSAELS +LQ C
Sbjct: 51 LGATEIIASVKAELGKPSILHPDKGKVAIFVDCSPTAEPLFEGRGSEELSAELSVSLQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGA IDLSSL+VV+GKVCWDLYIDGLV+SSDGNLLDAL AIK ALS+TGIP
Sbjct: 111 LLGGKSGAGAAIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V+V+ AASDE+PEVD+SDEEFLQFDTSGVPVI TLTKV IV
Sbjct: 171 VNVSVSAASDEEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIV 215
>gi|6648187|gb|AAF21185.1|AC013483_9 putative 3' exoribonuclease [Arabidopsis thaliana]
Length = 293
Score = 268 bits (686), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 134/172 (77%), Positives = 150/172 (87%), Gaps = 7/172 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDVIASVKAE+GRPS++QPDKGKVA+F+DCSPTAEPTF GRGGEELS+EL+ ALQ C
Sbjct: 50 IGGTDVIASVKAEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRC 109
Query: 61 LLGGKSGA-------GAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
LLGGKSGA GAGI+LSSL++ EGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL
Sbjct: 110 LLGGKSGAAIHVLVPGAGINLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 169
Query: 114 SNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
+NT IP V+V+AE A DEQPE+DISDEE+LQFDTS VPVI TLTKV IV
Sbjct: 170 TNTAIPKVNVSAEVADDEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIV 221
>gi|242083100|ref|XP_002441975.1| hypothetical protein SORBIDRAFT_08g006250 [Sorghum bicolor]
gi|241942668|gb|EES15813.1| hypothetical protein SORBIDRAFT_08g006250 [Sorghum bicolor]
Length = 287
Score = 268 bits (685), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 131/165 (79%), Positives = 148/165 (89%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T++IASVKAELG+PS + PDKGKV+IFVDCSPTAEP FEGRG EELSAELS+ALQ C
Sbjct: 52 LGVTEIIASVKAELGKPSILHPDKGKVSIFVDCSPTAEPMFEGRGSEELSAELSAALQRC 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSG+GA IDLSSL+VVEGKVCWDLYIDGLV+SSDGNLLDAL AAIK ALS+TGIP
Sbjct: 112 LLGGKSGSGAAIDLSSLIVVEGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPK 171
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V+V+ AAS+E+PEV++SDEEFLQFDTSGVPVI TLTKV IV
Sbjct: 172 VNVSVSAASEEEPEVNVSDEEFLQFDTSGVPVIITLTKVGRHYIV 216
>gi|388522149|gb|AFK49136.1| unknown [Lotus japonicus]
Length = 286
Score = 268 bits (685), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 133/165 (80%), Positives = 149/165 (90%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG+T+VIASVKAELG+PS +QPDKGKV+I++DCS TAEP FEGRGG++LSAELS ALQ
Sbjct: 51 MGATEVIASVKAELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRS 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLG KSGAGAGIDLSSL+VVEGK+CWDLYIDGLV+SSDGNLLDALGAAIKAALSNTGIP
Sbjct: 111 LLGAKSGAGAGIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPR 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V VAA A+ DE+PEV+ISD+EFLQFDTSGVPVI TLTKV IV
Sbjct: 171 VQVAAGASGDEKPEVEISDDEFLQFDTSGVPVIVTLTKVGRHSIV 215
>gi|6466958|gb|AAF13093.1|AC009176_20 hypothetical protein [Arabidopsis thaliana]
Length = 297
Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 134/176 (76%), Positives = 150/176 (85%), Gaps = 11/176 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDVIASVKAE+GRPS++QPDKGKVA+F+DCSPTAEPTF GRGGEELS+EL+ ALQ C
Sbjct: 50 IGGTDVIASVKAEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRC 109
Query: 61 LLGGKSGAG-----------AGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAI 109
LLGGKSGAG AGI+LSSL++ EGKVCWDLYIDGLVISSDGNLLDALGAAI
Sbjct: 110 LLGGKSGAGLQSSIHVLVPGAGINLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAI 169
Query: 110 KAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
KAAL+NT IP V+V+AE A DEQPE+DISDEE+LQFDTS VPVI TLTKV IV
Sbjct: 170 KAALTNTAIPKVNVSAEVADDEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIV 225
>gi|357518287|ref|XP_003629432.1| Exosome complex exonuclease RRP42 [Medicago truncatula]
gi|355523454|gb|AET03908.1| Exosome complex exonuclease RRP42 [Medicago truncatula]
Length = 286
Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 128/165 (77%), Positives = 146/165 (88%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+VIASVKAELG+PS MQPDKGKV+I++DCS TAEP FEGRG + LSA+LS+ALQ C
Sbjct: 51 IGATEVIASVKAELGKPSLMQPDKGKVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLG KSGAGA ID SSLVVVEGK+CWDLYIDGLV+SSDGNLLD LGAAIK ALSNTGIP
Sbjct: 111 LLGAKSGAGAAIDRSSLVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V +AA A+SDEQPEVD+SDE+F+QFDTSG+PVI TLTKV IV
Sbjct: 171 VQIAAGASSDEQPEVDVSDEDFMQFDTSGIPVIVTLTKVGKHYIV 215
>gi|388514143|gb|AFK45133.1| unknown [Medicago truncatula]
Length = 286
Score = 263 bits (672), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 128/165 (77%), Positives = 146/165 (88%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+VIASVKAELG+PS MQPDKGKV+I++DCS TAEP FEGRG + LSA+LS+ALQ C
Sbjct: 51 IGATEVIASVKAELGKPSLMQPDKGKVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLG KSGAGA ID SSLVVVEGK+CWDLYIDGLV+SSDGNLLD LGAAIK ALSNTGIP
Sbjct: 111 LLGAKSGAGAAIDRSSLVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V +AA A+SDEQPEVD+SDE+F+QFDTSG+PVI TLTKV IV
Sbjct: 171 VQIAAGASSDEQPEVDVSDEDFMQFDTSGIPVIVTLTKVGKHYIV 215
>gi|388511583|gb|AFK43853.1| unknown [Medicago truncatula]
Length = 286
Score = 263 bits (672), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 128/165 (77%), Positives = 146/165 (88%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+VIASVKAELG+PS MQPDKGKV+I++DCS TAEP FEGRG + LSA+LS+ALQ C
Sbjct: 51 IGATEVIASVKAELGKPSLMQPDKGKVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLG KSGAGA ID SSLVVVEGK+CWDLYIDGLV+SSDGNLLD LGAAIK ALSNTGIP
Sbjct: 111 LLGAKSGAGAAIDRSSLVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V +AA A+SDEQPEVD+SDE+F+QFDTSG+PVI TLTKV IV
Sbjct: 171 VQIAAGASSDEQPEVDVSDEDFMQFDTSGIPVIVTLTKVGEHYIV 215
>gi|217073628|gb|ACJ85174.1| unknown [Medicago truncatula]
Length = 286
Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 128/165 (77%), Positives = 146/165 (88%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+VIASVKAELG+PS MQPDKGKV+I++DCS TAEP FEGRG + LSA+LS+ALQ C
Sbjct: 51 IGATEVIASVKAELGKPSLMQPDKGKVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLG KSGAGA ID SSLVVVEGK+CWDLYIDGLV+SSDGNLLD LGAAIK ALSNTGIP
Sbjct: 111 LLGAKSGAGAAIDRSSLVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V +AA A+SDEQPEVD+SDE+F+QFDTSG+PVI TLTKV IV
Sbjct: 171 VQIAAGASSDEQPEVDVSDEDFMQFDTSGIPVIVTLTKVGKHYIV 215
>gi|217073740|gb|ACJ85230.1| unknown [Medicago truncatula]
Length = 286
Score = 261 bits (666), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 127/165 (76%), Positives = 146/165 (88%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+VIASVKAELG+PS MQPDKGKV+I++DCS TAEP FEGRG + LSA+LS+ALQ C
Sbjct: 51 IGATEVIASVKAELGKPSLMQPDKGKVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLG KSGAGA ID SSLVVVEGK+CWDLYIDGLV+SSDGNLLD LGAAIK ALS+TGIP
Sbjct: 111 LLGAKSGAGAAIDRSSLVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKVALSSTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V +AA A+SDEQPEVD+SDE+F+QFDTSG+PVI TLTKV IV
Sbjct: 171 VQIAAGASSDEQPEVDVSDEDFMQFDTSGIPVIVTLTKVGKHYIV 215
>gi|115488270|ref|NP_001066622.1| Os12g0403800 [Oryza sativa Japonica Group]
gi|108862543|gb|ABA97522.2| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|113649129|dbj|BAF29641.1| Os12g0403800 [Oryza sativa Japonica Group]
gi|215693833|dbj|BAG89032.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641114|gb|EEE69246.1| hypothetical protein OsJ_28497 [Oryza sativa Japonica Group]
Length = 284
Score = 258 bits (660), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 143/165 (86%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+VIA+VKAELG+PS + PDKGKV+IFVDCSPTA P FEGRG EE SAEL ALQ C
Sbjct: 51 LGATEVIATVKAELGKPSILHPDKGKVSIFVDCSPTAAPMFEGRGSEEFSAELCVALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGA IDLSSL+VV+GKVCWDLYIDGLV+SSDGNLLDAL AAIK ALS+TGIP
Sbjct: 111 LLGGKSGAGAAIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V+V+ A +DE+PEV++SDEEFLQFDTS VPVI TLTKV IV
Sbjct: 171 VNVSLSATTDEEPEVNVSDEEFLQFDTSSVPVIVTLTKVGKHYIV 215
>gi|357122793|ref|XP_003563099.1| PREDICTED: exosome complex component RRP42-like [Brachypodium
distachyon]
Length = 286
Score = 255 bits (652), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 125/165 (75%), Positives = 143/165 (86%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+VIASVKAELG+P+ + PDKGKV+I+VDCSPTA P FEGRG E+LSAELS ALQ C
Sbjct: 51 LGATEVIASVKAELGKPTVLHPDKGKVSIYVDCSPTAAPIFEGRGSEDLSAELSVALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGA IDLSSL+V+EGK CWDLYIDGLV+SSDGNLLDAL AAIK ALS+TGIP
Sbjct: 111 LLGGKSGAGAAIDLSSLIVLEGKACWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V+V+ A +D +PEVD+SDEEFLQFDTS VPVI TLTKV IV
Sbjct: 171 VNVSLNAETDGEPEVDVSDEEFLQFDTSSVPVIVTLTKVGKHYIV 215
>gi|357145083|ref|XP_003573518.1| PREDICTED: exosome complex component RRP42-like [Brachypodium
distachyon]
Length = 286
Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/165 (74%), Positives = 143/165 (86%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+VIASVKAELG+P+ + PDKGKV+I+VDCSPTA P FEGRG E+LSAELS ALQ C
Sbjct: 51 LGATEVIASVKAELGKPTVLHPDKGKVSIYVDCSPTAAPIFEGRGSEDLSAELSVALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGA IDLSSL+V+EGK CWDLY+DGLV+SSDGNL+DAL AAIK ALS+TGIP
Sbjct: 111 LLGGKSGAGAAIDLSSLIVLEGKACWDLYVDGLVVSSDGNLVDALAAAIKVALSDTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V+V+ A +D +PEVD+SDEEFLQFDTS VPVI TLTKV IV
Sbjct: 171 VNVSLNAETDGEPEVDVSDEEFLQFDTSSVPVIVTLTKVGKHYIV 215
>gi|449467882|ref|XP_004151651.1| PREDICTED: exosome complex exonuclease RRP42-like, partial [Cucumis
sativus]
Length = 195
Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 122/145 (84%), Positives = 135/145 (93%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T+VIA+VKAELGRP+ MQPDKGKV+I VDCSPTAEP FEGRGGEELS ELS AL+ C
Sbjct: 51 MGGTEVIATVKAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSG+GAGIDLSSL+VVEGK+CWDLYI+GLV+SS+GNLLDALGAAIKAALSNTGIP
Sbjct: 111 LLGGKSGSGAGIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQF 145
VHVAAEA +EQPEVD+SDEEFLQF
Sbjct: 171 VHVAAEALDNEQPEVDVSDEEFLQF 195
>gi|356553448|ref|XP_003545068.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP42-like [Glycine max]
Length = 273
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/161 (76%), Positives = 142/161 (88%), Gaps = 2/161 (1%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG+TDVIAS KA LG+PS +QPDK KV+I++DCS TAEP FEGRGG+EL+AELS+ALQ C
Sbjct: 51 MGATDVIASAKAVLGKPSLLQPDKXKVSIYIDCSSTAEPAFEGRGGDELAAELSNALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDAL--GAAIKAALSNTGI 118
LLGGKSGAGA I LSSL+VVEGK+CWDLYIDGL+++SDGNLLDAL + IKAALSNTGI
Sbjct: 111 LLGGKSGAGARIGLSSLIVVEGKICWDLYIDGLLVNSDGNLLDALIEXSTIKAALSNTGI 170
Query: 119 PSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
P V VAA ++DEQPEVD+S+EEFLQFDTSGVPVI TL KV
Sbjct: 171 PRVQVAAGTSNDEQPEVDVSNEEFLQFDTSGVPVIVTLAKV 211
>gi|147770895|emb|CAN74168.1| hypothetical protein VITISV_005208 [Vitis vinifera]
Length = 305
Score = 224 bits (572), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 123/170 (72%), Positives = 130/170 (76%), Gaps = 27/170 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDVIASVKAELG+PS QPDKGK GRGGEELS ELS ALQHC
Sbjct: 51 LGGTDVIASVKAELGKPSPSQPDKGK----------------GRGGEELSTELSGALQHC 94
Query: 61 LLGGKSGA-----------GAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAI 109
LLGGKSGA GAGIDLSSLVVVEGKVCWDLYIDGLV+SSDGNLLDALGAAI
Sbjct: 95 LLGGKSGAVGDMEVLTNVLGAGIDLSSLVVVEGKVCWDLYIDGLVVSSDGNLLDALGAAI 154
Query: 110 KAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
KAAL+NTGIP V VA A+ D PEVDISD+E+LQFDTSGVPVI TLTKV
Sbjct: 155 KAALTNTGIPKVEVAVGASGDGLPEVDISDDEYLQFDTSGVPVIVTLTKV 204
>gi|168041870|ref|XP_001773413.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675289|gb|EDQ61786.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 287
Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 98/159 (61%), Positives = 116/159 (72%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ SVKAELG P +P G + I V+CSPTA P FEGRGGEELS EL+ L+
Sbjct: 51 VGGTDVMVSVKAELGNPPKGRPSHGGMQIKVECSPTANPEFEGRGGEELSLELTRGLERS 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LGG +G+GA IDLS+L +V+GK CW L IDGLV+SSDGNLLDAL A+KAAL NTG+P
Sbjct: 111 FLGGPNGSGAAIDLSTLRIVDGKTCWVLCIDGLVLSSDGNLLDALSIAVKAALRNTGLPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
V V A A DE PE+++ DEE Q D S PVI TLTKV
Sbjct: 171 VEVVAGGAEDEDPEIEVDDEESSQLDVSNAPVIITLTKV 209
>gi|302786484|ref|XP_002975013.1| hypothetical protein SELMODRAFT_102800 [Selaginella moellendorffii]
gi|300157172|gb|EFJ23798.1| hypothetical protein SELMODRAFT_102800 [Selaginella moellendorffii]
Length = 288
Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/167 (56%), Positives = 122/167 (73%), Gaps = 4/167 (2%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDVI SVKAELG P + +P+ G + + V+CS TA P FEGRGGE+L+ ELS ALQ C
Sbjct: 51 LGGTDVIVSVKAELGSPRSGRPNYGSIEVMVECSATAGPEFEGRGGEDLNMELSRALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+GG SGAGA IDLS+L +V K CW+L++D LV++SDGNLLDAL +I AALSNTGIPS
Sbjct: 111 FVGGPSGAGAAIDLSTLGIVASKFCWELFVDCLVVNSDGNLLDAL--SIGAALSNTGIPS 168
Query: 121 VHVAAEAASDEQPEVDISD--EEFLQFDTSGVPVITTLTKVPFPLIV 165
V V AS++ ++++ D +EF + D S VP+I TLTK+ IV
Sbjct: 169 VKVTGNTASEDDADLEVGDNPDEFARLDASKVPLIITLTKIGRHYIV 215
>gi|302791331|ref|XP_002977432.1| hypothetical protein SELMODRAFT_106958 [Selaginella moellendorffii]
gi|300154802|gb|EFJ21436.1| hypothetical protein SELMODRAFT_106958 [Selaginella moellendorffii]
Length = 288
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 122/167 (73%), Gaps = 4/167 (2%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD+I SVKAELG P + +P+ G + + V+CS TA P FEGRGGE+L+ ELS ALQ C
Sbjct: 51 LGGTDLIVSVKAELGSPRSCRPNYGSIEVMVECSATAGPEFEGRGGEDLNMELSRALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+GG SGAGA IDLS+L +V K CW+L++D LV++SDGNLLDAL +I AALSNTGIPS
Sbjct: 111 FVGGPSGAGAAIDLSTLGIVASKFCWELFVDCLVVNSDGNLLDAL--SIGAALSNTGIPS 168
Query: 121 VHVAAEAASDEQPEVDISD--EEFLQFDTSGVPVITTLTKVPFPLIV 165
V V AS++ ++++ D +EF + D S VP+I TLTK+ IV
Sbjct: 169 VKVTGNTASEDDADLEVGDNPDEFARLDASKVPLIITLTKIGRHYIV 215
>gi|413935075|gb|AFW69626.1| hypothetical protein ZEAMMB73_456689, partial [Zea mays]
gi|413935078|gb|AFW69629.1| hypothetical protein ZEAMMB73_937743, partial [Zea mays]
Length = 209
Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/122 (76%), Positives = 101/122 (82%), Gaps = 1/122 (0%)
Query: 44 RGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
R L A L S LQ CLLGGKSGAGA IDLSSL+VV+GKVCWDLYIDGLV+SSDGNLLD
Sbjct: 17 RRRHRLRAPLLS-LQRCLLGGKSGAGAAIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLD 75
Query: 104 ALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPL 163
AL AIK ALS+TGIP V+V+ AASDE+PEVD+SDEEFLQFDTSGVPVI TLTKV
Sbjct: 76 ALAVAIKVALSDTGIPKVNVSVSAASDEEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHY 135
Query: 164 IV 165
IV
Sbjct: 136 IV 137
>gi|223972967|gb|ACN30671.1| unknown [Zea mays]
Length = 193
Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 81/121 (66%), Positives = 92/121 (76%), Gaps = 8/121 (6%)
Query: 53 LSSALQH--------CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDA 104
++ LQH + GK A IDLSSL+VV+GKVCWDLYIDGLV+SSDGNLLDA
Sbjct: 1 MTDQLQHQHRFYHPTSIFAGKQRAQQTIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDA 60
Query: 105 LGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLI 164
L AIK ALS+TGIP V+V+ AASDE+PEVD+SDEEFLQFDTSGVPVI TLTKV I
Sbjct: 61 LAVAIKVALSDTGIPKVNVSVSAASDEEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYI 120
Query: 165 V 165
V
Sbjct: 121 V 121
>gi|317574781|ref|NP_001188120.1| exosome complex exonuclease rrp42 [Ictalurus punctatus]
gi|308322915|gb|ADO28595.1| exosome complex exonuclease rrp42 [Ictalurus punctatus]
Length = 291
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 104/169 (61%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ +KAE+GRP M PD+G + FVDCS A P FEGRGGEEL ELS+ L
Sbjct: 53 LGQTDILVGIKAEIGRPRPMVPDEGYLEFFVDCSANATPEFEGRGGEELGVELSNNLYKV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S +DL SL + G+ CW LY+D L++ DGNL DA+ AIKAAL NT IP+
Sbjct: 113 FNNRHS-----LDLRSLCIRPGENCWVLYVDVLLLQCDGNLFDAMSIAIKAALFNTRIPN 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
VH+ + DE+ E+++SD+ + ++ + VP I TL K+ +V
Sbjct: 168 VHI----SEDEEGGKEIELSDDPYDCMRLNVENVPCIVTLCKIGHRHVV 212
>gi|62955139|ref|NP_001017585.1| exosome complex exonuclease RRP42 [Danio rerio]
gi|62531183|gb|AAH92997.1| Zgc:110717 [Danio rerio]
Length = 291
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 103/169 (60%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ +KAE+G+P M PD+G + FVDCS A P FEGRGGEEL ELS+ L
Sbjct: 53 LGHTDVLVGIKAEIGKPRPMVPDEGYLEFFVDCSANATPEFEGRGGEELGVELSNTLYKV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S +DL SL + G+ CW LY+D L++ DGNL DA+ AIKAAL NT IP
Sbjct: 113 FNNRHS-----LDLRSLCICPGENCWVLYVDVLLLQCDGNLFDAISIAIKAALFNTRIPK 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
VH+ + DE+ E+++SD+ F ++ + VP I TL K+ +V
Sbjct: 168 VHI----SEDEEGGKEIELSDDPFDCMRLNVENVPCIVTLCKIGHRHVV 212
>gi|308322117|gb|ADO28196.1| exosome complex exonuclease rrp42 [Ictalurus furcatus]
Length = 291
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 103/169 (60%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ +KAE+GRP M PD+G + FVDCS A P FEGRGGEEL ELS+ L
Sbjct: 53 LGQTDILVGIKAEIGRPRPMVPDEGYLEFFVDCSANATPEFEGRGGEELGVELSNNLYKV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S +DL SL + G+ CW LY+D L++ DGNL DA+ AIKAAL NT IP
Sbjct: 113 FNNRHS-----LDLRSLCISPGESCWVLYVDVLLLQCDGNLFDAMSIAIKAALFNTRIPK 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
VH+ + DE+ E+++SD+ + ++ + VP I TL K+ +V
Sbjct: 168 VHI----SEDEEGGKEIELSDDPYDCMRLNVENVPCIVTLCKIGHRHVV 212
>gi|384250624|gb|EIE24103.1| ribosomal protein S5 domain 2-like protein [Coccomyxa
subellipsoidea C-169]
Length = 293
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 107/163 (65%), Gaps = 2/163 (1%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+V+ VK E+G P PD G + + V+CSP A P+++G+ GE+L EL+ +L+
Sbjct: 49 LGNTEVLVGVKVEIGVPLEETPDCGGLQVTVECSPCAGPSYQGKSGEDLGVELTKSLERY 108
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L G+SG G +DL +L +V G+ CW L ID L++++DG++LDAL A KAAL +T IP
Sbjct: 109 LKPGRSGKGGCVDLRALSIVSGRRCWILCIDALILAADGSVLDALSVAAKAALQDTRIPL 168
Query: 121 VHVAAEAASDEQPEVDISDE--EFLQFDTSGVPVITTLTKVPF 161
V V A DE+PE+++ D+ Q DTS VPVI T+ V F
Sbjct: 169 VEVGATENPDEEPELELDDDPAHATQVDTSSVPVIVTVYIVMF 211
>gi|213983243|ref|NP_001135527.1| uncharacterized protein LOC100216070 [Xenopus (Silurana)
tropicalis]
gi|156229972|gb|AAI52124.1| Zgc:110717 protein [Danio rerio]
gi|195539973|gb|AAI67984.1| Unknown (protein for MGC:180975) [Xenopus (Silurana) tropicalis]
Length = 291
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 103/169 (60%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ +KAE+G+P M P++G + FVDCS A P FEGRGGEEL ELS+ L
Sbjct: 53 LGHTDVLVGIKAEIGKPRPMVPNEGYLEFFVDCSANATPEFEGRGGEELGVELSNTLYKV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S +DL SL + G+ CW LY+D L++ DGNL DA+ AIKAAL NT IP
Sbjct: 113 FNNRHS-----LDLRSLCICPGENCWVLYVDVLLLQCDGNLFDAISIAIKAALFNTRIPK 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
VH+ + DE+ E+++SD+ F ++ + VP I TL K+ +V
Sbjct: 168 VHI----SEDEEGGKEIELSDDPFDCMRLNVENVPCIVTLCKIGHRHVV 212
>gi|225716114|gb|ACO13903.1| Exosome complex exonuclease RRP42 [Esox lucius]
Length = 291
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 101/167 (60%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ VKAE+G+P M P +G + FVDCS A P FEGRGG+EL ELS+ L
Sbjct: 53 LGHTDVLVGVKAEIGKPRPMVPHEGYLEFFVDCSANATPEFEGRGGDELGVELSNTLYKV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S IDL SL + G+ CW LY+D L++ DGNL DA+ AIKAAL NT IP
Sbjct: 113 FNNRSS-----IDLKSLCISPGEHCWVLYVDVLLLQCDGNLFDAISVAIKAALFNTKIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
VH++ + E+++SD+ + ++ + VP I TL KV + +V
Sbjct: 168 VHLSENEEGGK--EIELSDDPYDCMRLNVENVPCIVTLCKVGYRHVV 212
>gi|221114702|ref|XP_002157039.1| PREDICTED: exosome complex component RRP42-like [Hydra
magnipapillata]
Length = 279
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 101/167 (60%), Gaps = 12/167 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ T+V+ VKAE+ P +P+ GKV FVDCS A P FEGRGG+EL+ ELS+ALQ+
Sbjct: 53 LAGTNVLIGVKAEISEPLPSKPNLGKVEFFVDCSANASPIFEGRGGDELAFELSAALQNT 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
G IDL L ++ GK CW LYID LV+ GNL DAL A+KAAL NT IP+
Sbjct: 113 FSG-------AIDLEKLCIIPGKACWILYIDALVLECGGNLFDALSIAVKAALHNTRIPT 165
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
+ + E A + +++SD+ + D S +PV+ TL KV IV
Sbjct: 166 LSIIGEGA---EKSIEVSDDPYNSTPIDVSNIPVLVTLNKVGERYIV 209
>gi|213512498|ref|NP_001134892.1| Exosome complex exonuclease RRP42 [Salmo salar]
gi|209736940|gb|ACI69339.1| Exosome complex exonuclease RRP42 [Salmo salar]
Length = 291
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 102/169 (60%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ VKAE+G+P M P +G + FVDCS A P FEGRGG+EL ELS+ L
Sbjct: 53 LGHTDVLVGVKAEMGKPRPMVPGEGYLEFFVDCSANATPEFEGRGGDELGMELSNTLYKV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S +DL SL + G+ CW LY+D L++ DGNL DA+ AIKAAL NT IP
Sbjct: 113 FNNRYS-----VDLKSLCISPGEHCWVLYVDVLLLQCDGNLFDAISVAIKAALFNTKIPK 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
VH+ + DE+ E+++SD+ + ++ + VP I TL KV +V
Sbjct: 168 VHI----SEDEEGGKEIELSDDPYDCMRLNVENVPCIVTLCKVGHRHVV 212
>gi|348529951|ref|XP_003452475.1| PREDICTED: exosome complex component RRP42-like [Oreochromis
niloticus]
Length = 291
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 102/169 (60%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VKAE+G+P P +G + FVDCS A P FEGRGGEEL ELS+ L
Sbjct: 53 LGHTAVLVGVKAEIGKPRPTVPTEGYLEFFVDCSANATPEFEGRGGEELGTELSNTLYKV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+S IDL SL + G+ CW LY+D L++ DGNL DA+ AIKAAL NT IP
Sbjct: 113 FNNKRS-----IDLKSLCICAGEHCWVLYVDVLLLQCDGNLYDAISVAIKAALFNTKIPK 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
VH+ +SD++ E+++SD+ + ++ + VP I TL KV +V
Sbjct: 168 VHI----SSDDEGGKEIELSDDPYDCMRLNVENVPCIVTLCKVGHRHVV 212
>gi|432881537|ref|XP_004073829.1| PREDICTED: exosome complex component RRP42-like [Oryzias latipes]
Length = 291
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 101/169 (59%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +KAE+G+P + PD+G + FVDCS A P FEGRGGEEL ELS+ L
Sbjct: 53 LGHTAVLVGIKAEIGKPRPLVPDEGYLEFFVDCSANATPEFEGRGGEELGIELSNTLYRV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S IDL L + G+ CW LY+D L++ DGNL DA+ AIKAAL NT IP
Sbjct: 113 FNNKNS-----IDLKGLCISAGEHCWVLYVDVLLLQCDGNLYDAISVAIKAALFNTKIPR 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
VH+ +SD++ EV++SD+ F ++ VP I TL KV +V
Sbjct: 168 VHM----SSDDEGGKEVELSDDPFDCVRLSVENVPCIVTLCKVGHRHVV 212
>gi|260834769|ref|XP_002612382.1| hypothetical protein BRAFLDRAFT_280121 [Branchiostoma floridae]
gi|229297759|gb|EEN68391.1| hypothetical protein BRAFLDRAFT_280121 [Branchiostoma floridae]
Length = 291
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 108/168 (64%), Gaps = 11/168 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+TD++ VKAE+G P +P +GK+ FVDCS A P FEGRGGEEL+ E+S+ALQ
Sbjct: 55 LGNTDILVGVKAEMGEPDPGRPKEGKLEFFVDCSANASPEFEGRGGEELAIEVSNALQRI 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +DL++L ++ CW L++D LV+ GNL DA+ A+KAAL NT IP+
Sbjct: 115 F-----NSKSTLDLTALCIIPEGQCWVLFVDVLVLECGGNLFDAVSLAVKAALFNTRIPT 169
Query: 121 VHVAAEAASDE-QPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V A+ DE Q E+++SD+ + + D VP+I TL+K+ +V
Sbjct: 170 VVVTAD---DEGQQEIELSDDPYDVKRLDVDNVPLIVTLSKIGHRHVV 214
>gi|307111365|gb|EFN59599.1| hypothetical protein CHLNCDRAFT_132993 [Chlorella variabilis]
Length = 292
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 104/161 (64%), Gaps = 2/161 (1%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDVI VKAE+G P +PD G++ V+CSP A P F GRGG+EL+ ELS AL+
Sbjct: 53 LGETDVIVGVKAEIGSPDLDRPDCGRLNFAVECSPVASPAFRGRGGDELAGELSRALERS 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ G SG G G+DLS L +V GK CW LY+D L+++ GNL DA+ A KAAL++ IP
Sbjct: 113 MYPGPSGRGGGVDLSLLSIVSGKTCWVLYVDALLLNIGGNLHDAVSVAAKAALADAKIPK 172
Query: 121 VHVAAEAASDEQPEVDISDE--EFLQFDTSGVPVITTLTKV 159
V V ++P+ ++ D+ E ++ D G+P+ T++++
Sbjct: 173 VEVQPGEDPTDEPDYEVDDDPSEAMRLDVGGMPICVTVSQI 213
>gi|218186707|gb|EEC69134.1| hypothetical protein OsI_38058 [Oryza sativa Indica Group]
Length = 334
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 73/88 (82%)
Query: 78 VVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDI 137
VV G+VCWDLYIDGLV+SSDGNLLDAL AIK ALS+TGIP V+V+ A +DE+PEVD+
Sbjct: 178 VVKVGQVCWDLYIDGLVVSSDGNLLDALAGAIKVALSDTGIPKVNVSLSATTDEEPEVDV 237
Query: 138 SDEEFLQFDTSGVPVITTLTKVPFPLIV 165
SDEEFLQFDTS VPVI TLTKV IV
Sbjct: 238 SDEEFLQFDTSSVPVIVTLTKVGKHYIV 265
>gi|356461011|ref|NP_001239083.1| exosome component 7 [Gallus gallus]
Length = 291
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 102/169 (60%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +PD+G + FVDCS A P FEGRGGEEL E++S L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPDEGYLEFFVDCSANATPEFEGRGGEELGTEIASTLYRI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S G+ +DL SL + G+ CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 113 F----SSEGS-VDLKSLCINPGEHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPK 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V DE+ E+++SD+ + ++ + VP I TL K+ + +V
Sbjct: 168 VRV----LEDEEGSKEIELSDDPYDCIRLNVEDVPCIVTLNKIGYRHVV 212
>gi|303284571|ref|XP_003061576.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456906|gb|EEH54206.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 318
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 105/174 (60%), Gaps = 11/174 (6%)
Query: 3 STDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLL 62
STDVI +VKA++G PSA P G++ V+ S ++ + GRGGE + ELS AL+ LL
Sbjct: 56 STDVIVTVKADIGAPSAEHPGDGRLRCAVELSSASDTAYGGRGGEARATELSRALERSLL 115
Query: 63 GGKSGA---------GAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
G +G+ G +D+S+L + GK CW L +DGLV++ DGN+LDAL A +AAL
Sbjct: 116 GATAGSSASLSAHGEGCALDMSALGIQRGKSCWILQVDGLVLADDGNVLDALSMATRAAL 175
Query: 114 SNTGIPSVHVAAEAASDEQPEVDISD--EEFLQFDTSGVPVITTLTKVPFPLIV 165
+ IP V A D+ E+++ D EE + D SGVPVI TLT+V IV
Sbjct: 176 FDAKIPKVTAVAGPNPDDPAELELDDDPEECSRLDVSGVPVIVTLTRVGKHSIV 229
>gi|410911694|ref|XP_003969325.1| PREDICTED: exosome complex component RRP42-like [Takifugu rubripes]
Length = 291
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 100/169 (59%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +K E+G+P M P++G + FVDCS A P FEGRGGEEL ELS+ L
Sbjct: 53 LGHTVVLVGIKTEIGKPRPMVPNEGYLEFFVDCSANATPEFEGRGGEELGTELSNTLYRV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S IDL L + G+ CW LY+D L++ DGNL DA+ AIKAAL NT IP
Sbjct: 113 FNNKHS-----IDLKRLCISPGEHCWVLYVDVLLLQCDGNLYDAMSIAIKAALFNTKIPK 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V + +SD++ ++++SD+ + ++ + VP I TL KV IV
Sbjct: 168 VFI----SSDDEGGKDIELSDDPYDCMRLNVENVPCIVTLCKVGHRHIV 212
>gi|449270963|gb|EMC81600.1| Exosome complex exonuclease RRP42, partial [Columba livia]
Length = 257
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 102/169 (60%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +PD+G + FVDCS A P FEGRGGEEL E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPDEGYLEFFVDCSANATPEFEGRGGEELGTEIANTLYRV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +DL SL + + CW +Y+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 113 F-----SSESSVDLKSLCINPREHCWVIYVDVLLLECGGNLFDAISIAVKAALFNTRIPK 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
VH+ DE+ E+++SD+ + ++ + VP I TL+K+ + +V
Sbjct: 168 VHI----LEDEEGSKEIELSDDPYDCIRLNVDDVPCIVTLSKIGYRHVV 212
>gi|291393541|ref|XP_002713440.1| PREDICTED: exosome component 7 [Oryctolagus cuniculus]
Length = 290
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 99/169 (58%), Gaps = 14/169 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +PD+G V FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPDEGYVEFFVDCSANATPEFEGRGGDDLGTEIANTLARI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
G +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 113 FNKG------SLDLKSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 166
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
VHV DE+ E+++SD+ + +Q VP I TL K+ + +V
Sbjct: 167 VHV----LEDEEGSKEIELSDDPYDCIQLSVENVPCIITLCKIGYRHVV 211
>gi|242022077|ref|XP_002431468.1| Exosome complex exonuclease RRP42, putative [Pediculus humanus
corporis]
gi|212516756|gb|EEB18730.1| Exosome complex exonuclease RRP42, putative [Pediculus humanus
corporis]
Length = 290
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 97/161 (60%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VKAE+ +P+ PDKGK+ FVDCS A P FE RGGE+L+ +LSSAL
Sbjct: 53 LANTDILVGVKAEIVKPTIENPDKGKIEFFVDCSANATPAFEKRGGEDLANDLSSALTRA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
A +DL SL ++ CW LY+D L++ GNL DA+G +KAAL NT IP
Sbjct: 113 Y-----SAPESLDLKSLCILPKFQCWKLYVDVLILECGGNLFDAVGLGVKAALRNTFIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V AA D PE+ IS++ + + DTS PV T+ ++
Sbjct: 168 VVAAALDGCD--PELVISEDPYDCWRLDTSKTPVFVTVMRI 206
>gi|380023350|ref|XP_003695486.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP42-like [Apis florea]
Length = 290
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 101/161 (62%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+TD++ +K EL P A +P++GK+ FVDCS TA P FEG+GG++L+ E+S+
Sbjct: 53 IGNTDILVGIKVELDIPHADKPNEGKLEFFVDCSATATPAFEGKGGDDLATEISN----- 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L DL +L ++ K CW +Y+D L++ GNL DA+G +KAAL++T IP
Sbjct: 108 ILTAAYQTRNAFDLRTLCILPHKKCWKIYVDVLILQCGGNLFDAVGITVKAALNSTEIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
+ A +P++++SD+ + +Q DTS P+I TL K+
Sbjct: 168 ITAATLDGG--EPDIELSDDPYDCIQLDTSNYPIIVTLCKI 206
>gi|326922105|ref|XP_003207292.1| PREDICTED: exosome complex exonuclease RRP42-like [Meleagris
gallopavo]
Length = 291
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 101/169 (59%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +PD+G + FVDCS A P FEGRGGEEL E++S L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPDEGYLEFFVDCSANATPEFEGRGGEELGTEIASTLYRI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S G+ IDL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 113 F----SSEGS-IDLKSLCINPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPK 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V DE+ E+++SD+ + ++ + VP I TL K+ + +V
Sbjct: 168 VRV----LEDEEGSKEIELSDDPYDCIRLNVDDVPCIVTLNKIGYRHVV 212
>gi|350413287|ref|XP_003489947.1| PREDICTED: exosome complex component RRP42-like [Bombus impatiens]
Length = 291
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 103/167 (61%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+TD++ +K EL P A +P++GK+ FVDCS TA P FEG+GG++L+ E+S+
Sbjct: 53 IGNTDILVGIKIELDVPHADRPNEGKLEFFVDCSATATPAFEGKGGDDLATEISN----- 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L DL +L ++ K CW +Y+D L++ GNL DA+G +KAAL++T IP
Sbjct: 108 ILTAAYQTRNAFDLRTLCILPHKKCWKIYVDILILQCGGNLFDAVGITVKAALNSTEIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
+ A +P++++SD+ + +Q DTS P+I TL K+ IV
Sbjct: 168 ITAATLDGG--EPDIELSDDAYDCIQLDTSNYPIIVTLCKIGDNYIV 212
>gi|383861879|ref|XP_003706412.1| PREDICTED: exosome complex component RRP42-like [Megachile
rotundata]
Length = 291
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 102/167 (61%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+TDV+ +K EL P A +P++GK+ FVDCS TA P FEG+GG++L+ E+S+
Sbjct: 53 IGNTDVLVGIKVELDSPHADKPNEGKLEFFVDCSATATPAFEGKGGDDLATEISN----- 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L DL +L ++ K CW +++D L++ GNL D +GAA+KAAL +T IP
Sbjct: 108 ILTIAYQTRNAFDLRTLCILPSKKCWKIFVDVLILQCGGNLFDTVGAAVKAALYSTEIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
+ A +P++ +SD+ + +Q DTS PVI TL K+ IV
Sbjct: 168 ITAATLDGG--EPDIQLSDDLYDCIQLDTSNYPVIVTLCKIGDNYIV 212
>gi|290998465|ref|XP_002681801.1| predicted protein [Naegleria gruberi]
gi|284095426|gb|EFC49057.1| predicted protein [Naegleria gruberi]
Length = 289
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 96/162 (59%), Gaps = 5/162 (3%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
TDV+ VK E+G PD+G++ + V+CSP+A FEGRG EE++AEL S L++ L
Sbjct: 55 TDVLVGVKVEIGEVDQDFPDQGRLEVHVECSPSANNEFEGRGAEEINAELISTLRNQLKN 114
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
+D + L +V+GK CW LY+D +V+ S GNL DAL A +AAL NT IP + V
Sbjct: 115 S-----FAVDWTKLCIVKGKQCWILYVDCIVLDSAGNLFDALAIATRAALYNTRIPKIEV 169
Query: 124 AAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
+ ++ + EV E+ + D S +P+ TL K+ IV
Sbjct: 170 MEISPTETEFEVSDDPHEYSRIDCSNIPISVTLGKIGSKFIV 211
>gi|340708517|ref|XP_003392871.1| PREDICTED: exosome complex component RRP42-like isoform 1 [Bombus
terrestris]
gi|340708519|ref|XP_003392872.1| PREDICTED: exosome complex component RRP42-like isoform 2 [Bombus
terrestris]
Length = 291
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 103/167 (61%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+TD++ +K EL P A + ++GK+ FVDCS TA P FEG+GG++L+ E+S+
Sbjct: 53 IGNTDILVGIKIELDVPHADRSNEGKLEFFVDCSATATPAFEGKGGDDLATEISN----- 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L DL +L ++ K CW +Y+D L++ GNL DA+G A+KAAL++T IP
Sbjct: 108 ILTAAYQTPNAFDLRTLCILPHKKCWKIYVDILILQCGGNLFDAVGIAVKAALNSTEIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
+ A +P++++SD+ + +Q DTS P+I TL K+ IV
Sbjct: 168 ITTATLDGG--EPDIELSDDAYDCIQLDTSNYPIIVTLCKIGDNYIV 212
>gi|307206575|gb|EFN84575.1| Exosome complex exonuclease RRP42 [Harpegnathos saltator]
Length = 296
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 98/161 (60%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+TDV+ VK E+ P A +P++GK+ FVDCS A P FEG+GGE+L+ E+S+
Sbjct: 58 IGNTDVLVGVKVEIDTPHANKPEEGKLDFFVDCSANATPAFEGKGGEDLATEISN----- 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LL DL L ++ K CW +Y+D L++ GNL DA+GAA+KAAL NT IP
Sbjct: 113 LLSLAYRTPYAFDLKELCILPHKKCWKMYVDILILQCGGNLFDAVGAAVKAALYNTEIPR 172
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V A +P+V +SD+ + ++ + + PV+ T+ K+
Sbjct: 173 VVTA--MLDGNEPDVKLSDDLYDCIKLNVTNYPVVITVCKI 211
>gi|345091073|ref|NP_001230753.1| exosome component 7 [Sus scrofa]
Length = 291
Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 99/167 (59%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG+EL E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDELGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K IDL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNK----GSIDLKSLCISPREHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V + + ++++SD+ + +Q + VP I TL K+ + +V
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIQLNVENVPCIVTLCKIGYRHVV 212
>gi|390474971|ref|XP_002807638.2| PREDICTED: exosome complex component RRP42 [Callithrix jacchus]
Length = 291
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGMPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ DGNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISAREHCWVLYVDVLLLECDGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V DE+ ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 168 VRV----LEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYQHVV 212
>gi|395540147|ref|XP_003772020.1| PREDICTED: exosome complex component RRP42 [Sarcophilus harrisii]
Length = 281
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 101/167 (60%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +PD+G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 43 LGHTDILVGVKAEMGTPKLERPDEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 101
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K IDL+SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 102 IFNNK----GSIDLTSLCISPREHCWILYVDVLLLECGGNLFDAISIAVKAALFNTSIPK 157
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V + + ++++SD+ + ++ + VP I TL+K+ + +V
Sbjct: 158 VRVLEDEEGSK--DIELSDDPYDCIRLNVENVPCIITLSKIGYRHVV 202
>gi|355686807|gb|AER98193.1| exosome component 7 [Mustela putorius furo]
Length = 291
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 99/167 (59%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +PD+G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPDEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ DGNL D + A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKSLCISPREHCWILYVDVLLLECDGNLFDTICIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V + + ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVV 212
>gi|440905791|gb|ELR56125.1| Exosome complex exonuclease RRP42, partial [Bos grunniens mutus]
Length = 273
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 100/167 (59%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 35 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 93
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS IDL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 94 IFNNKSS----IDLKSLCISPREHCWVLYVDVLLLECGGNLFDAISVAVKAALFNTRIPR 149
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V + + ++++SD+ + +Q VP I TL K+ + +V
Sbjct: 150 VRVLEDEEGSK--DIELSDDPYDCIQLSVENVPCIVTLCKIGYRHVV 194
>gi|358418234|ref|XP_003583876.1| PREDICTED: exosome complex component RRP42-like [Bos taurus]
gi|359078399|ref|XP_003587703.1| PREDICTED: exosome complex component RRP42-like [Bos taurus]
Length = 291
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 101/169 (59%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS IDL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----IDLKSLCISPREHCWVLYVDVLLLECGGNLFDAISVAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V DE+ ++++SD+ + +Q VP I TL K+ + +V
Sbjct: 168 VRV----LEDEEGSKDIELSDDPYDCIQLSVENVPCIVTLCKIGYRHVV 212
>gi|321475502|gb|EFX86465.1| hypothetical protein DAPPUDRAFT_222073 [Daphnia pulex]
Length = 290
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 98/161 (60%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ ++D++ VK EL P +P +G++ FVDCS A P FEGRGGE+L+ E+ LQ
Sbjct: 53 LANSDILVGVKVELASPLPDKPQEGRLEFFVDCSANATPEFEGRGGEDLANEICRFLQR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+G I+LS L V+ G+ CW LY+D L++ GNL DA+ A+K+AL T IPS
Sbjct: 112 ----SYASGDTINLSELSVLTGQQCWVLYVDILILECGGNLYDAVSLAVKSALYATQIPS 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
+ VA +QPE+++SD+ + + +T +P + TL K+
Sbjct: 168 IKVA--TMDGDQPELELSDDPYDTKRLNTENIPCVVTLMKI 206
>gi|403268453|ref|XP_003926289.1| PREDICTED: exosome complex component RRP42 [Saimiri boliviensis
boliviensis]
Length = 291
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPDFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ DGNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECDGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V DE+ ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 168 VRV----LEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVV 212
>gi|426249669|ref|XP_004018572.1| PREDICTED: exosome complex component RRP42 [Ovis aries]
Length = 291
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 101/169 (59%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASAAPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS IDL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----IDLKSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V DE+ ++++SD+ + +Q VP I TL K+ + +V
Sbjct: 168 VRV----LEDEEGSKDIELSDDPYDCVQLSVENVPCIVTLCKIGYRHVV 212
>gi|345321857|ref|XP_003430500.1| PREDICTED: exosome complex component RRP42-like [Ornithorhynchus
anatinus]
Length = 276
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 100/167 (59%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P +G + FVDCS A P FEGRGG+EL E+++ L
Sbjct: 38 LGHTDILVGVKAEMGTPKLEKPKEGFLEFFVDCSANAAPEFEGRGGDELGTEIANTLYR- 96
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS IDL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 97 IFNNKSS----IDLESLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 152
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V + + ++++SD+ + ++ + VP I TL+K+ + +V
Sbjct: 153 VQVLEDEEGSK--DIELSDDPYDCIRLNVENVPCIVTLSKIGYRHVV 197
>gi|349602645|gb|AEP98722.1| Exosome complex exonuclease RRP42-like protein, partial [Equus
caballus]
Length = 283
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 100/167 (59%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++AL
Sbjct: 45 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANALYR- 103
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 104 IFNNKSS----VDLKSLCISPREHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 159
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V + + ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 160 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLRKIGYRHVV 204
>gi|432100894|gb|ELK29247.1| Exosome complex component RRP42 [Myotis davidii]
Length = 298
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 99/167 (59%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG+EL E+++ L
Sbjct: 60 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDELGTEIANTLYR- 118
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 119 IFSNKSS----VDLKSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 174
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V + + ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 175 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVV 219
>gi|443685755|gb|ELT89253.1| hypothetical protein CAPTEDRAFT_159382 [Capitella teleta]
Length = 287
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 95/167 (56%), Gaps = 13/167 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
M +TD++ VKAE+ P QP G+V FVDCS A P FEGRGGE+L+ E++S L
Sbjct: 53 MANTDILVGVKAEIVEPETEQPKNGRVEFFVDCSANATPAFEGRGGEDLATEIASLLD-- 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+DL +L ++ GK CW LY+D L++ GNL DA+ A+K+AL T IP
Sbjct: 111 -------LSVHLDLEALCIISGKQCWLLYVDVLILECGGNLFDAVALAVKSALHQTRIPL 163
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V+ + E+++SD+ F + T VP + TL K+ +V
Sbjct: 164 VTVS--VGERGEAEIELSDDPFDCKRVGTDNVPCLVTLNKIGLAHVV 208
>gi|395843587|ref|XP_003794559.1| PREDICTED: exosome complex component RRP42 [Otolemur garnettii]
Length = 291
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 99/167 (59%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKSLCISPREHCWVLYVDVLLLECGGNLFDAISVAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V + + ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVV 212
>gi|156366152|ref|XP_001627004.1| predicted protein [Nematostella vectensis]
gi|156213900|gb|EDO34904.1| predicted protein [Nematostella vectensis]
Length = 266
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 98/161 (60%), Gaps = 10/161 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ TD++ VKAE+G P+ + P G+V FVDCS A F GR G++L+A+L +L
Sbjct: 53 LSDTDILVGVKAEIGEPNLLTPGCGRVEFFVDCSSNASVEFNGRSGDDLAADLMRSLDR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ IDLSSL ++ G+ CW LY+D LV+ GNL DAL A+KAAL NT IP+
Sbjct: 112 ----TYSNKSAIDLSSLSIIHGQQCWVLYVDTLVLECGGNLYDALSLAVKAALYNTRIPN 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V V+++ + E++ISD+ + Q +P+I TL+K+
Sbjct: 168 VTVSSDGG---EVELEISDDPYDCHQLPPDQMPIIITLSKI 205
>gi|338714956|ref|XP_001496279.3| PREDICTED: exosome complex component RRP42-like [Equus caballus]
Length = 291
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 100/169 (59%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKSLCISPREHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V DE+ ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 168 VRV----LEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVV 212
>gi|332020945|gb|EGI61339.1| Exosome complex exonuclease RRP42 [Acromyrmex echinatior]
Length = 292
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 95/158 (60%), Gaps = 9/158 (5%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
TDV+ VK E+ P A +P++GK+ FVDCS A P FEG+GG++L+ E+S+ L
Sbjct: 57 TDVLVGVKLEIDTPYAERPEEGKLEFFVDCSANATPAFEGKGGDDLATEISNVLSMAY-- 114
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
DL L ++ + CW +Y+D L++ GNL DA+GAA+KAAL NT IP V +
Sbjct: 115 ---QTPDAFDLKQLCIIPHQKCWKIYVDILILQCGGNLFDAVGAAVKAALYNTEIPRVII 171
Query: 124 AAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
A +P++ ISD+ + ++ D + PV+ T+ K+
Sbjct: 172 AILDGG--EPDIQISDDPYDCIKLDVTNYPVVLTVCKI 207
>gi|417398454|gb|JAA46260.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp42
[Desmodus rotundus]
Length = 291
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 100/169 (59%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG+EL E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDELGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L V + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFHNKSS----VDLEALCVSPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V DE+ ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 168 VRV----LEDEEGSKDIELSDDPYDSIRLSVDNVPCIVTLCKIGYRHVV 212
>gi|334348902|ref|XP_003342119.1| PREDICTED: exosome complex component RRP42-like [Monodelphis
domestica]
Length = 332
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 100/167 (59%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 94 LGHTDILVGVKAEMGTPRLERPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRI 153
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S IDL++L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 154 FNNKGS-----IDLTALCISPREHCWILYVDVLLLECGGNLFDAISIAVKAALFNTSIPK 208
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V + + ++++SD+ + ++ + VP I TL+K+ + +V
Sbjct: 209 VRVLEDEEGTK--DIELSDDPYDCIRLNVENVPCIITLSKIGYRHVV 253
>gi|189055112|dbj|BAG38096.1| unnamed protein product [Homo sapiens]
Length = 291
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V DE+ ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 168 VRV----LEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVV 212
>gi|297285946|ref|XP_002802903.1| PREDICTED: exosome complex exonuclease RRP42-like [Macaca mulatta]
Length = 556
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 99/167 (59%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTSIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V + + ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVV 212
>gi|189083688|ref|NP_055819.2| exosome complex component RRP42 [Homo sapiens]
gi|322510129|sp|Q15024.3|EXOS7_HUMAN RecName: Full=Exosome complex component RRP42; AltName:
Full=Exosome component 7; AltName: Full=Ribosomal
RNA-processing protein 42; AltName: Full=p8
gi|119585135|gb|EAW64731.1| exosome component 7, isoform CRA_a [Homo sapiens]
gi|119585136|gb|EAW64732.1| exosome component 7, isoform CRA_a [Homo sapiens]
gi|119585137|gb|EAW64733.1| exosome component 7, isoform CRA_a [Homo sapiens]
Length = 291
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V DE+ ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 168 VRV----LEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVV 212
>gi|15215485|gb|AAH12831.1| Exosome component 7 [Homo sapiens]
gi|168272912|dbj|BAG10295.1| exosome complex exonuclease RRP42 [synthetic construct]
Length = 291
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V DE+ ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 168 VRV----LEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVV 212
>gi|402860382|ref|XP_003894609.1| PREDICTED: exosome complex component RRP42 [Papio anubis]
gi|402860384|ref|XP_003894610.1| PREDICTED: exosome complex component RRP42 [Papio anubis]
gi|355559716|gb|EHH16444.1| hypothetical protein EGK_11725 [Macaca mulatta]
gi|355746753|gb|EHH51367.1| hypothetical protein EGM_10727 [Macaca fascicularis]
gi|380786223|gb|AFE64987.1| exosome complex component RRP42 [Macaca mulatta]
gi|384943954|gb|AFI35582.1| exosome complex component RRP42 [Macaca mulatta]
Length = 291
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 100/169 (59%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTSIPR 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V DE+ ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 168 VRV----LEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVV 212
>gi|387915924|gb|AFK11571.1| exosome complex component RRP42-like protein [Callorhinchus milii]
Length = 291
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 99/167 (59%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VKAE+G P +P +G + FVDCS A P FEGRGGE+L E+++ L
Sbjct: 53 IGHTGVLVGVKAEMGAPKLERPKEGFLEFFVDCSANATPEFEGRGGEDLGTEIANTLYRV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
G S +DL++L + + CW L++D L++ GNL DA+ A+KAAL NT IP
Sbjct: 113 FDNGSS-----LDLTALCITPREHCWILFVDVLLLECGGNLFDAISIAVKAALHNTRIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V + + E+++SD+ + ++ + VP I TL+K+ + +V
Sbjct: 168 VRVLED--EEGSKEIELSDDPYDCIRLNVESVPCIITLSKIGYRHVV 212
>gi|332215753|ref|XP_003257009.1| PREDICTED: exosome complex component RRP42 [Nomascus leucogenys]
gi|332215755|ref|XP_003257010.1| PREDICTED: exosome complex component RRP42 [Nomascus leucogenys]
Length = 291
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V DE+ ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 168 VRV----LEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVV 212
>gi|473949|dbj|BAA06226.1| KIAA0116 [Homo sapiens]
Length = 290
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 100/167 (59%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 52 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 111 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 166
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V + + ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 167 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVV 211
>gi|122920911|pdb|2NN6|E Chain E, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 305
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 100/167 (59%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 67 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 125
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 126 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 181
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V + + ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 182 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVV 226
>gi|353681756|ref|NP_001238821.1| exosome complex component RRP42 [Pan troglodytes]
gi|410206888|gb|JAA00663.1| exosome component 7 [Pan troglodytes]
gi|410246930|gb|JAA11432.1| exosome component 7 [Pan troglodytes]
gi|410287270|gb|JAA22235.1| exosome component 7 [Pan troglodytes]
gi|410328427|gb|JAA33160.1| exosome component 7 [Pan troglodytes]
Length = 291
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V DE+ ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 168 VRV----LEDEEGSKDIELSDDPYDCIRLSVENVPCIITLCKIGYRHVV 212
>gi|431905092|gb|ELK10147.1| Exosome complex exonuclease RRP42 [Pteropus alecto]
Length = 311
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 99/167 (59%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 73 LGHTDILVGVKAEMGAPRLDKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 131
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 132 IFNNKSS----VDLKSLCISPREHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 187
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V + + ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 188 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVV 232
>gi|395733899|ref|XP_002813914.2| PREDICTED: exosome complex component RRP42 [Pongo abelii]
gi|395733901|ref|XP_003776313.1| PREDICTED: exosome complex component RRP42 [Pongo abelii]
Length = 291
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 101/169 (59%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V DE+ ++++SD+ + ++ +P I TL K+ + +V
Sbjct: 168 VRV----LEDEEGSKDIELSDDPYDCIRLSVENIPCIVTLCKIGYRHVV 212
>gi|307176033|gb|EFN65792.1| Exosome complex exonuclease RRP42 [Camponotus floridanus]
Length = 426
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 95/158 (60%), Gaps = 9/158 (5%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
TDV+ VK E+ P A +PD+GK+ FVDCS A P FEG+GG++L+ E+S+ L
Sbjct: 191 TDVLVGVKLEIDTPYAEKPDEGKLDFFVDCSANATPAFEGKGGDDLATEISNVLSMAY-- 248
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
DL L ++ K CW +Y+D L++ GNL DA+GAA+KAAL NT IP V +
Sbjct: 249 ---QTPDVFDLRQLCIIPHKKCWKMYVDILILQCGGNLFDAVGAAVKAALYNTEIPKV-I 304
Query: 124 AAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
AA E P++ +SD+ + ++ D + P I T+ K+
Sbjct: 305 AATLDGGE-PDIQVSDDPYDCIKLDITTYPSIVTVCKI 341
>gi|73985825|ref|XP_533858.2| PREDICTED: exosome complex component RRP42 isoform 1 [Canis lupus
familiaris]
Length = 291
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 97/167 (58%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS IDL SL + + CW LY+D L++ GNL D + A+KAAL NT IP
Sbjct: 112 IFNNKS----SIDLKSLCISPREHCWILYVDVLLLECGGNLFDTICIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V + + ++++SD+ + + VP I TL K+ + +V
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCFRLSVENVPCIVTLCKIGYRHVV 212
>gi|410950992|ref|XP_003982186.1| PREDICTED: exosome complex component RRP42 [Felis catus]
Length = 291
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 98/167 (58%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL D + A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKSLCISPREHCWILYVDVLLLECGGNLFDTISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V + + ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVV 212
>gi|344276339|ref|XP_003409966.1| PREDICTED: exosome complex component RRP42-like [Loxodonta
africana]
Length = 457
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 96/165 (58%), Gaps = 5/165 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L AE+++ L +
Sbjct: 219 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGAEIANTL-YG 277
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 278 IFNNKS----SVDLRSLCISPREHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIPK 333
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V V + + E+ + ++ VP I TL K+ + +V
Sbjct: 334 VRVLEDEEGSKDIELFDDPYDCIRLSVDNVPCIVTLCKIGYRHVV 378
>gi|124487127|ref|NP_001074657.1| exosome complex exonuclease RRP42 [Mus musculus]
gi|408360083|sp|Q9D0M0.2|EXOS7_MOUSE RecName: Full=Exosome complex exonuclease RRP42; AltName:
Full=Exosome component 7; AltName: Full=Ribosomal
RNA-processing protein 42
gi|66267444|gb|AAH94932.1| Exosome component 7 [Mus musculus]
gi|124376042|gb|AAI32364.1| Exosome component 7 [Mus musculus]
gi|148677125|gb|EDL09072.1| mCG23310, isoform CRA_b [Mus musculus]
gi|148877509|gb|AAI45676.1| Exosome component 7 [Mus musculus]
Length = 291
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 96/163 (58%), Gaps = 13/163 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKS----SVDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVA--AEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V V E A D +++SD+ + ++ VP I TL K+
Sbjct: 168 VRVLEDEEGAKD----IELSDDPYDCIRLSVENVPCIVTLCKI 206
>gi|322788559|gb|EFZ14187.1| hypothetical protein SINV_07329 [Solenopsis invicta]
Length = 292
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 93/158 (58%), Gaps = 9/158 (5%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
TDV+ VK E+ P A +P +GK+ FVDCS A P FEG+GG++L+ E+S+ L
Sbjct: 57 TDVLVGVKVEIDTPYAERPHEGKLDFFVDCSANATPAFEGKGGDDLATEISNVLSIAY-- 114
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
DL L ++ K CW +Y+D L++ GNL DA+GAA+KAAL NT IP V
Sbjct: 115 ---QTPNAFDLKQLCIIPYKKCWKMYVDILILQCGGNLFDAVGAAVKAALYNTEIPRVIT 171
Query: 124 AAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
A +P++ +SD+ + ++ D + P++ T+ K+
Sbjct: 172 ATLDGG--EPDIQVSDDPYDCIKLDVTNYPLVVTVCKI 207
>gi|348582602|ref|XP_003477065.1| PREDICTED: exosome complex component RRP42-like [Cavia porcellus]
Length = 291
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 95/163 (58%), Gaps = 13/163 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPEEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S +DL SL + + CW LY+D L++ GNL DA+ +KAAL NT IP
Sbjct: 112 IFNNRSS----VDLKSLCISPREHCWVLYVDVLLLECGGNLFDAISVTVKAALFNTRIPK 167
Query: 121 VHVA--AEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V V E A D +++SD+ + +Q VP I TL K+
Sbjct: 168 VRVLEDEEGAKD----IELSDDPYDCMQLSVENVPCIVTLCKI 206
>gi|405963081|gb|EKC28685.1| Exosome complex exonuclease RRP42 [Crassostrea gigas]
Length = 262
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 98/167 (58%), Gaps = 10/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++A VKAELG PS +P+KG++ FVDCS A P FEGRGGEEL+AE+ +
Sbjct: 53 LANTDILAGVKAELGTPSPDKPNKGRLEFFVDCSANATPVFEGRGGEELAAEIGN----- 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L + DL +L ++ + CW LY+D L++ GNL D A+KAAL NT IP
Sbjct: 108 ILTRTYDCPSCFDLEALCIIPEEQCWILYVDVLLLECGGNLFDVASIAVKAALYNTKIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V+ + E++ISD+ + + + P I T+ K+ +V
Sbjct: 168 VTVSRDEG---LVELEISDDPYDVQRVEVQSAPCIVTVCKIGHSHVV 211
>gi|281202081|gb|EFA76286.1| hypothetical protein PPL_10049 [Polysphondylium pallidum PN500]
Length = 1016
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 62/161 (38%), Positives = 95/161 (59%), Gaps = 11/161 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +T V+ +KA++G P+ +P+ G + V+C P+A P FEG+G E+L+ EL+ L+
Sbjct: 806 LSNTHVLVGIKADIGAPTTDKPNSGVLNYSVECCPSASPEFEGKGAEQLNIELAKQLERM 865
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L +DL SLV+V G+ CW+L+ID V+ SDGNL DAL +AAL NT +P+
Sbjct: 866 LENS-------LDLESLVIVPGRYCWNLHIDATVLDSDGNLFDALSIVTRAALFNTRLPT 918
Query: 121 VHVAAEAASDEQPEVDISDEE--FLQFDTSGVPVITTLTKV 159
+ V EQ E ++S++ + VP+ TLTKV
Sbjct: 919 IKVV--QGEHEQIEFEVSEDSDTYQSLSIENVPICVTLTKV 957
>gi|241813566|ref|XP_002416505.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp42, putative
[Ixodes scapularis]
gi|215510969|gb|EEC20422.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp42, putative
[Ixodes scapularis]
Length = 290
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 99/167 (59%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ +KA+L P D+G++ FVDC+ A+P FEGRGGE+++AE+SSAL
Sbjct: 53 LANTDILVGIKAQLETPDPGSTDQGRIEFFVDCTANADPEFEGRGGEDIAAEISSALAQA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K +DL SL VV G+ W LY+D L++ G+L+DA+ A+KAAL + IP
Sbjct: 113 YRSPKC-----LDLRSLAVVPGQQVWVLYVDILILECGGSLVDAVSVAVKAALYDLKIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V + D PEV++S + F + T VP TL+KV I+
Sbjct: 168 VSVTVDENGD--PEVEVSGDPFDVEKLSTENVPCFITLSKVGQQFIL 212
>gi|198424385|ref|XP_002127184.1| PREDICTED: similar to Exosome complex exonuclease RRP42 (Ribosomal
RNA-processing protein 42) (Exosome component 7) (p8)
[Ciona intestinalis]
Length = 290
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 101/161 (62%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GS++++ VK ELG P P++G + VDCSP A+P+F+GRGGE+LSA +S C
Sbjct: 53 LGSSELLVGVKVELGSPDPKAPNEGLIHFHVDCSPNADPSFQGRGGEDLSANIS-----C 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L + IDL++L ++ K CW +++D L++ GNLLDA+ A+KAAL NTG+P+
Sbjct: 108 ILTRIYCNKSSIDLNTLGIIPHKQCWVVHVDVLILECGGNLLDAVSIAVKAALHNTGVPN 167
Query: 121 VHVA--AEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
+ V E + D +D +F+ +T PV+ T++KV
Sbjct: 168 IQVTDGDEGTQEISLPDDPNDVKFI--NTVNAPVLVTISKV 206
>gi|426340209|ref|XP_004034025.1| PREDICTED: exosome complex component RRP42 [Gorilla gorilla
gorilla]
gi|426340211|ref|XP_004034026.1| PREDICTED: exosome complex component RRP42 [Gorilla gorilla
gorilla]
Length = 291
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 98/163 (60%), Gaps = 13/163 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKS----SVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKV 159
V V DE+ ++++SD+ + ++ VP I TL K+
Sbjct: 168 VRV----LEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKI 206
>gi|213688370|ref|NP_001094195.1| exosome component 7 [Rattus norvegicus]
gi|149018124|gb|EDL76765.1| exosome component 7 [Rattus norvegicus]
Length = 291
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 95/161 (59%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P +G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLERPSEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V V + + ++++SD+ + ++ VP I TL K+
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKI 206
>gi|59809424|gb|AAH89995.1| Exosc7 protein, partial [Rattus norvegicus]
Length = 257
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 95/161 (59%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P +G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 19 LGHTDILVGVKAEMGTPKLERPSEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 77
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 78 IFNNKSS----VDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 133
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V V + + ++++SD+ + ++ VP I TL K+
Sbjct: 134 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKI 172
>gi|37359778|dbj|BAC97867.1| mKIAA0116 protein [Mus musculus]
Length = 286
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 95/163 (58%), Gaps = 13/163 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD + VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 48 LGHTDFLVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 106
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 107 IFNNKSS----VDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 162
Query: 121 VHVA--AEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V V E A D +++SD+ + ++ VP I TL K+
Sbjct: 163 VRVLEDEEGAKD----IELSDDPYDCIRLSVENVPCIVTLCKI 201
>gi|301754007|ref|XP_002912799.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex exonuclease
RRP42-like [Ailuropoda melanoleuca]
Length = 459
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 14/169 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL SL + + CW LY+D L++ GNL D + A+KAAL NT IP
Sbjct: 113 F------NKSSVDLKSLCISPREHCWILYVDVLLLECGGNLFDTICIAVKAALFNTRIPR 166
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V DE+ ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 167 VRV----LEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVV 211
>gi|281343574|gb|EFB19158.1| hypothetical protein PANDA_000598 [Ailuropoda melanoleuca]
Length = 271
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 96/167 (57%), Gaps = 10/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 34 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRI 93
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL SL + + CW LY+D L++ GNL D + A+KAAL NT IP
Sbjct: 94 F------NKSSVDLKSLCISPREHCWILYVDVLLLECGGNLFDTICIAVKAALFNTRIPR 147
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V + + ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 148 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVV 192
>gi|113197990|gb|AAI21334.1| hypothetical LOC496941 [Xenopus (Silurana) tropicalis]
Length = 291
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 94/165 (56%), Gaps = 5/165 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ VKAE+G P +P +G + FVDCS A P FEGRGGEEL AE++ L +
Sbjct: 53 IGHTDVLVGVKAEMGTPKLERPGEGYLEFFVDCSANATPEFEGRGGEELGAEIAFML-YK 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S IDL SL + E + CW LY+D L++ GNL D + A+KAAL N IP
Sbjct: 112 IFDNRS----SIDLESLCIQEREHCWVLYVDVLLLECGGNLFDTISVAVKAALFNARIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V + + + E+ + ++ + VP I TL+++ +V
Sbjct: 168 VRILEDDEGGKDFELSDDPYDCVRLNVVNVPCIVTLSRIGHRHVV 212
>gi|413935084|gb|AFW69635.1| hypothetical protein ZEAMMB73_958064 [Zea mays]
Length = 121
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 56/69 (81%), Positives = 63/69 (91%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T++IASVKAELG+PS + PDKGKVAIFVDCSPTAEP FEGRG EELSAELS +LQ C
Sbjct: 51 LGATEIIASVKAELGKPSILHPDKGKVAIFVDCSPTAEPLFEGRGSEELSAELSVSLQRC 110
Query: 61 LLGGKSGAG 69
LLGGKSGAG
Sbjct: 111 LLGGKSGAG 119
>gi|30962875|gb|AAH52656.1| Exosome component 7 [Mus musculus]
Length = 291
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 13/163 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL +T IP
Sbjct: 112 IFNNKS----SVDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFDTRIPR 167
Query: 121 VHVA--AEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V V E A D +++SD+ + ++ VP I TL K+
Sbjct: 168 VRVLEDEEGAKD----IELSDDPYDCIRLSVENVPCIVTLCKI 206
>gi|427787609|gb|JAA59256.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp42
[Rhipicephalus pulchellus]
Length = 289
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ +KAEL P P G+V FVDC+ A+P FEGRGGEE++ E+ SAL
Sbjct: 53 LANTDILVGIKAELDAPDPSAPHLGRVEFFVDCTANADPVFEGRGGEEIATEIRSALART 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K +DL SL VV G+ W LY+D L++ G+L+DA+ A+KAAL + IP
Sbjct: 113 YSSPKC-----LDLKSLAVVPGQQAWVLYVDVLILECGGSLIDAVSVAVKAALYDLKIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V V + + +PE+++SD+ + + + VP TL+KV
Sbjct: 168 VSVTID--ENGEPEIEVSDDPYDVNKMSIANVPCFITLSKV 206
>gi|346469645|gb|AEO34667.1| hypothetical protein [Amblyomma maculatum]
Length = 289
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 5/159 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ +KAEL P P KG++ FVDC+ A+P FEGRGGEE++ ++ SAL
Sbjct: 53 LANTDILVGIKAELDEPYPTAPGKGRIEFFVDCTANADPEFEGRGGEEVATKIKSALAQA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
G+ +DL SL V+ G+ W LY+D L++ G+LLDA+ +KAAL + IP
Sbjct: 113 F-----GSPKCLDLKSLAVIPGQQVWVLYVDVLILECGGSLLDAVSVGVKAALFDLKIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
V V + +++ EV + + D + VP TL+KV
Sbjct: 168 VSVTVDENGEQEIEVSGDPYDVSKMDITDVPCFITLSKV 206
>gi|226372666|gb|ACO51958.1| Exosome complex exonuclease RRP42 [Rana catesbeiana]
Length = 291
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 97/167 (58%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ VKAE+ P +P +G + FVDCS A P FEGRGGEEL E+++ L
Sbjct: 53 IGHTDVLVGVKAEMSTPKLDRPCEGYLEFFVDCSANATPEFEGRGGEELGTEIANMLYK- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS IDL SL ++ + CW LYID L++ G+L D + +KAAL NT IP
Sbjct: 112 VFDNKSS----IDLESLCILPREHCWTLYIDVLLLHCGGSLFDTISIGVKAALFNTRIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V + ++ E+++SD+ + ++ + VP I TL K+ +V
Sbjct: 168 VSVLEDDGGNK--EIELSDDPYDCMRLNVENVPCIITLCKIGHRHVV 212
>gi|328866292|gb|EGG14677.1| hypothetical protein DFA_10935 [Dictyostelium fasciculatum]
Length = 282
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ T ++ +KA++ P + P+KG + VDC P+A P +EG+G + ++ EL+ L+
Sbjct: 53 LADTHILVGIKADISAPDPLTPNKGSLTFSVDCCPSASPEYEGKGADYINIELAKQLERV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ S +DL L ++ GK CW+LYID +V+ S GNL DAL ++AAL+NT +P+
Sbjct: 113 MKDSNS-----MDLGGLCIMPGKYCWNLYIDAIVLDSGGNLFDALSIGVRAALANTRLPT 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
+ + S EV E D GVP+ TLT + +V
Sbjct: 168 IRITQGEYSTVDFEVSDDPEAMQSLDIDGVPINVTLTTIGNQFVV 212
>gi|354486487|ref|XP_003505412.1| PREDICTED: exosome complex component RRP42-like [Cricetulus
griseus]
Length = 274
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 95/163 (58%), Gaps = 13/163 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P +G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 36 LGHTDILVGVKAEMGTPKLEKPSEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 94
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DLSSL + + CW L +D L++ GNL DA+ A+KAAL NT IP
Sbjct: 95 IFNNKS----SVDLSSLCISPREHCWVLCVDVLLLECGGNLFDAISIAVKAALFNTRIPR 150
Query: 121 VHVA--AEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V V E A D +++SD+ + ++ VP I TL K+
Sbjct: 151 VRVLEDEEGAKD----IELSDDPYDCIRLSVENVPCIVTLCKI 189
>gi|357631022|gb|EHJ78761.1| exosc7 protein [Danaus plexippus]
Length = 310
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 93/161 (57%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P +P++GK+ FVDCS A P FEGRGGE+L+ +S+ +Q
Sbjct: 53 LANTDILVGVKTEIDVPKPDKPNQGKIDFFVDCSANATPEFEGRGGEQLANNISNLMQRA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
++ DL L ++EGK CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 113 YHSQQA-----FDLKQLCILEGKQCWKLYVDILILECGGNLCDAVSLAVKAALFNTRIPF 167
Query: 121 VHVAA--EAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
V A D Q D D + L+ T+ P++ TL K+
Sbjct: 168 VKAALLDGGNVDLQLSDDPYDSKLLEVGTA--PLLVTLCKI 206
>gi|444512849|gb|ELV10190.1| Exosome complex component RRP42 [Tupaia chinensis]
Length = 308
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 94/161 (58%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+ P +P +G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 70 LGHTDILVGVKAEMSTPKLEKPSEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 128
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 129 IFNNKSS----VDLRSLCISPREHCWALYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 184
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V V + + ++++SD+ + ++ VP I TL K+
Sbjct: 185 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKI 223
>gi|58381777|ref|XP_311461.2| AGAP010483-PA [Anopheles gambiae str. PEST]
gi|55242661|gb|EAA07136.2| AGAP010483-PA [Anopheles gambiae str. PEST]
Length = 303
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 94/161 (58%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VKAE+ P+ +P++GKV F+DCS A P FEGRGGE+L+ E+S+ L
Sbjct: 53 LANTDILVGVKAEIDTPNPDRPNEGKVDFFIDCSANATPEFEGRGGEQLATEISNTLSKA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K G DL+ L ++ G CW LY+D L++ GNL DA+ A+K AL NT IP
Sbjct: 113 YESQK-----GFDLAGLCIMAGHQCWKLYVDVLILECGGNLFDAVSLAVKGALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V A ++ ++D+ + + D + P++ T+ K+
Sbjct: 168 VSTAMHDGG--SMDLILTDDPYDCERLDVTTAPILVTVCKI 206
>gi|224045546|ref|XP_002199163.1| PREDICTED: exosome complex component RRP42 [Taeniopygia guttata]
Length = 290
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 99/169 (58%), Gaps = 14/169 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ +KAE+G P +PD+G + FVDCS + P EGRGGEEL ++++ L
Sbjct: 53 LGETDILVGIKAEMGTPKLEKPDEGYLEFFVDCSSNS-PELEGRGGEELGTDIANTLYRI 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S +DL SL + + CW LY+D L++ GN+ DA+ A+KAAL NT IP
Sbjct: 112 FSCENS-----VDLKSLCINPKEHCWVLYVDVLLLECGGNIFDAISIAVKAALFNTRIPK 166
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V DE+ E+++SD+ + ++ + VP + TL+K+ + +V
Sbjct: 167 VRV----LEDEEGTKEIELSDDPYDCIRLNIDEVPCVVTLSKIGYRHVV 211
>gi|56970613|gb|AAH88546.1| LOC496941 protein, partial [Xenopus (Silurana) tropicalis]
Length = 289
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 93/165 (56%), Gaps = 5/165 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ VKAE+G P + +G + FVDCS A P FEGRGGEEL AE++ L +
Sbjct: 51 IGHTDVLVGVKAEMGTPKLERAGEGYLEFFVDCSANATPEFEGRGGEELGAEIAFML-YK 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S IDL SL + E + CW LY+D L++ GNL D + A+KAAL N IP
Sbjct: 110 IFDNRS----SIDLESLCIQEREHCWVLYVDVLLLECGGNLFDTISVAVKAALFNARIPK 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V + + + E+ + ++ + VP I TL+++ +V
Sbjct: 166 VRILEDDEGGKDFELSDDPYDCVRLNVVNVPCIVTLSRIGHRHVV 210
>gi|82524833|ref|NP_001032342.1| exosome component 7 [Xenopus (Silurana) tropicalis]
gi|89267936|emb|CAJ82816.1| exosome component 7 [Xenopus (Silurana) tropicalis]
Length = 291
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 93/165 (56%), Gaps = 5/165 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ VKAE+G P + +G + FVDCS A P FEGRGGEEL AE++ L +
Sbjct: 53 IGHTDVLVGVKAEMGTPKLERAGEGYLEFFVDCSANATPEFEGRGGEELGAEIAFML-YK 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S IDL SL + E + CW LY+D L++ GNL D + A+KAAL N IP
Sbjct: 112 IFDNRS----SIDLESLCIQEREHCWVLYVDVLLLECGGNLFDTISVAVKAALFNARIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V + + + E+ + ++ + VP I TL+++ +V
Sbjct: 168 VRILEDDEGGKDFELSDDPYDCVRLNVVNVPCIVTLSRIGHRHVV 212
>gi|312371957|gb|EFR20014.1| hypothetical protein AND_20780 [Anopheles darlingi]
Length = 407
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 93/161 (57%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VKAE+ P +P++GK+ F+DCS A P FEGRGGE+L+ E+S+ L
Sbjct: 161 LANTDILVGVKAEIDTPHPDRPNEGKIDFFIDCSANAAPEFEGRGGEQLAEEISNTLAKA 220
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ G DLSSL ++ CW LY+D LV+ GNL DA+ A+K AL NT +P
Sbjct: 221 Y-----ESQHGFDLSSLCILANHQCWKLYVDVLVLECGGNLFDAISLAVKGALYNTRVPR 275
Query: 121 VHVAA--EAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
V A + D D D E L+ DT VP++ T+ K+
Sbjct: 276 VSTAMLDGGSMDLILTDDPFDCERLKVDT--VPLLVTVCKI 314
>gi|148236233|ref|NP_001086766.1| exosome component 7 [Xenopus laevis]
gi|50418038|gb|AAH77415.1| Exosc7-prov protein [Xenopus laevis]
Length = 291
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 92/165 (55%), Gaps = 5/165 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ VKAE+G P +P +G + FVDCS A P FEGRGGEEL E++ L +
Sbjct: 53 IGHTDVLVGVKAEMGTPKLERPGEGYLEFFVDCSANAAPEFEGRGGEELGTEIAFML-YK 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S IDL SL + + CW LY+D L++ GNL D + A+KAAL N IP
Sbjct: 112 IFDNRS----SIDLESLCIQAREHCWVLYVDVLLLECGGNLFDTISVAVKAALFNARIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V V + + E+ + ++ + VP I TL+++ +V
Sbjct: 168 VRVLEDEEGGKDFELSDDPYDCVRLNVVNVPCIVTLSRIGHRHVV 212
>gi|193645775|ref|XP_001952675.1| PREDICTED: exosome complex exonuclease RRP42-like [Acyrthosiphon
pisum]
Length = 289
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 92/161 (57%), Gaps = 11/161 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ ++D++ VK E+ P P GK+ FVDCS A P FEGRGGE L+AELS L C
Sbjct: 53 LANSDILVCVKVEIDTPLPEAPKDGKIEYFVDCSANATPAFEGRGGEHLAAELSRFL--C 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L G +LS L +V G+ CW L++D L++ GNL DA+ A KAAL NT +P+
Sbjct: 111 L-----AHGPVFNLSKLCIVPGQSCWKLFVDVLILECGGNLFDAVSLAAKAALCNTSLPN 165
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
+ E + ++ ISD+ F + S +PV+ +L K+
Sbjct: 166 IVGTYEDG--QNIDLQISDDPFDTKPLEASDLPVLVSLCKI 204
>gi|340377723|ref|XP_003387378.1| PREDICTED: exosome complex component RRP42-like [Amphimedon
queenslandica]
Length = 281
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 90/164 (54%), Gaps = 10/164 (6%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
T+++ VKAE+G+P+ + P+KG++ FVDCS A P FEGR GE+L L+ L
Sbjct: 56 TNILVGVKAEIGQPNPLNPNKGRIEFFVDCSALASPKFEGRRGEDLGRNLAHRLSDLYEN 115
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
IDL SL ++ G+ CW +Y+D LV+ G +LD L A+K AL+NT IP + V
Sbjct: 116 SNC-----IDLESLSIIPGQDCWIIYVDALVLEYSGGVLDCLSIAVKGALANTKIPKLTV 170
Query: 124 AAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
E E SD F DT+ VPV +L+ + IV
Sbjct: 171 IGEGEEQEIEI---SDNPFDSTSIDTNNVPVFVSLSLIGNQFIV 211
>gi|332375881|gb|AEE63081.1| unknown [Dendroctonus ponderosae]
Length = 283
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 93/161 (57%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TDV+ +VK E+ P +P +GK+ FVDCS A P FEGRGGE L+ EL++
Sbjct: 50 LANTDVLVAVKIEVDTPLPEKPFEGKIEFFVDCSANATPDFEGRGGESLAVELAN----- 104
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L + DL L +++GK CW LY+D L++ GNL DA+ A+KAAL T +P
Sbjct: 105 ILSSAYESPLTFDLRKLCILKGKKCWKLYVDVLILECGGNLFDAVSLAVKAALHITQVPK 164
Query: 121 VHVAAEAASDEQPEVDISDE--EFLQFDTSGVPVITTLTKV 159
+ A + E+++SD + + + +PV+ T+ K+
Sbjct: 165 --IKAVNIDGDNVEIEVSDNIIDCDRLNVENLPVLVTVCKI 203
>gi|157169424|ref|XP_001651510.1| exosome complex exonuclease rrp42 (ribosomal RNA processing protein
42 [Aedes aegypti]
gi|108878402|gb|EAT42627.1| AAEL005851-PA [Aedes aegypti]
Length = 299
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 93/161 (57%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ +VKA++ PS +P +GK+ FVDCS A P FEGRGGEEL+ E+S+ L
Sbjct: 53 LANTDILVAVKADIDAPSPDRPKEGKIEFFVDCSANATPDFEGRGGEELATEISNTLSKA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ DLS L ++ CW LY+D L++ GNL DA+ A+KAAL +T +P
Sbjct: 113 YLSQQA-----FDLSPLCILAKHQCWKLYVDILILECGGNLFDAVSLAVKAALYSTKLPR 167
Query: 121 VHVAA--EAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
V A A D D D E L T+ P++ T+ K+
Sbjct: 168 VSSAELDGGAMDIILSDDPYDCERLNIQTA--PLLVTVCKI 206
>gi|114052969|ref|NP_001040497.1| exosc7 protein [Bombyx mori]
gi|95103140|gb|ABF51511.1| exosc7 protein [Bombyx mori]
Length = 277
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 84/159 (52%), Gaps = 5/159 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ +K E+ P +PD GK+ VD S A P FEGRGGE L++ +S+ +Q
Sbjct: 53 LANTDILVGIKTEIDTPKPDKPDMGKIEFLVDGSANATPEFEGRGGENLASSISNTMQRA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
++ DL L +VEGK CW LY+D L++ GN DA+ A KAAL NT IP
Sbjct: 113 YHSSQA-----FDLKQLCIVEGKQCWKLYVDILILECGGNWFDAVSLATKAALFNTRIPL 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
V + ++ +F D P++ TL K+
Sbjct: 168 VKALLMDGGNVDLQLSDDPYDFKFLDVGSAPLLVTLCKI 206
>gi|255086427|ref|XP_002509180.1| predicted protein [Micromonas sp. RCC299]
gi|226524458|gb|ACO70438.1| predicted protein [Micromonas sp. RCC299]
Length = 243
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 98/182 (53%), Gaps = 25/182 (13%)
Query: 3 STDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLL 62
+TDVI +VKA++G P P G++ V+ S A+ + GRGGE L EL+ AL+ L
Sbjct: 57 TTDVIVAVKADIGTPPKDNPTHGRIQCAVELSAIADVDYMGRGGETLGVELARALERSLT 116
Query: 63 G-----------------------GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDG 99
G K G GA +D+S+L + +GK CW L DG+V++SDG
Sbjct: 117 GQTTGGMGSLADAVAGERGADARVSKHGPGAALDMSTLGIQKGKTCWLLQCDGVVLTSDG 176
Query: 100 NLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFL--QFDTSGVPVITTLT 157
++LDAL A K AL++ IP V A +D+ E+++ D+ + D SGVP+I T
Sbjct: 177 SVLDALSIATKCALADAKIPKVTAVAGPDADDPAELELDDDPAACSKLDVSGVPLIVTCV 236
Query: 158 KV 159
V
Sbjct: 237 GV 238
>gi|91079418|ref|XP_967497.1| PREDICTED: similar to exosome complex exonuclease rrp42 (ribosomal
RNA processing protein 42 [Tribolium castaneum]
gi|270003471|gb|EEZ99918.1| hypothetical protein TcasGA2_TC002710 [Tribolium castaneum]
Length = 285
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 93/165 (56%), Gaps = 5/165 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TDV+ +VK E+ P +P +GK+ FVDCS A P FEGRGGE+L+ E+S++
Sbjct: 50 LANTDVLVAVKIEVDVPYPERPKEGKLEFFVDCSANATPDFEGRGGEDLAIEISNS---- 105
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + DL+ L +++G CW +++D L++ GNL DA+ A+KAAL +T IP
Sbjct: 106 -LSAAYKSPEVFDLTKLCILKGHKCWKIFVDILLLECGGNLYDAVSIAVKAALWDTRIPL 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V ++ EV + + D + P++ T+ K+ IV
Sbjct: 165 VKSVTVDGNNVDMEVSDELHDCQKLDVTAAPIMVTVCKIGEQCIV 209
>gi|302837568|ref|XP_002950343.1| hypothetical protein VOLCADRAFT_90878 [Volvox carteri f.
nagariensis]
gi|300264348|gb|EFJ48544.1| hypothetical protein VOLCADRAFT_90878 [Volvox carteri f.
nagariensis]
Length = 311
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 103/192 (53%), Gaps = 33/192 (17%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG+TDVI VK E+G PS+ P++G++ + V+ SP A P ++GR GE ++++ ++
Sbjct: 49 MGATDVIVGVKVEVGSPSSSAPNQGRLQVTVEFSPCASPIYKGRFGETYGEQIAAVIESS 108
Query: 61 L---------------------------LGG-----KSGA-GAGIDLSSLVVVEGKVCWD 87
L L G SG G G+DLS L ++ GK W
Sbjct: 109 LAPSGRAGGGGGGGVAYDGTLPTAASPHLRGAPPSSSSGTPGPGLDLSKLCILPGKTAWV 168
Query: 88 LYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDT 147
L++D LV++ DGN+L A+ AA AAL +T IP V +AA +E+ E+D S + D
Sbjct: 169 LFVDALVLNDDGNVLGAVSAATLAALQHTRIPKVEAVRDAAGEEEIELDDSPGAAWRLDV 228
Query: 148 SGVPVITTLTKV 159
S +P++ T ++V
Sbjct: 229 SALPLVVTTSRV 240
>gi|384486761|gb|EIE78941.1| hypothetical protein RO3G_03646 [Rhizopus delemar RA 99-880]
Length = 303
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 7/167 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G +DV+ VK E+G QP+KG++ + V+CSP+A FEGRG +E++ L+ A+
Sbjct: 53 LGESDVLVGVKVEIGEVERSQPNKGRLVLNVECSPSASQQFEGRGADEINNSLTMAIDRI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
G +S G+DL L ++ G+ CW +YID +V+ + GNLLD + +AAL N IP
Sbjct: 113 FNGPQS----GLDLEKLCIIPGQQCWVIYIDAMVMDAAGNLLDCIVMTTRAALYNARIPK 168
Query: 121 VHVAAEAASDEQPEV--DISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
+ + + EV D+ D E + +P+ TL K+ I+
Sbjct: 169 TEIQDLGEGEYEFEVMDDVEDAEPI-VGWENLPISVTLYKIADRYII 214
>gi|391336427|ref|XP_003742582.1| PREDICTED: exosome complex component RRP42-like [Metaseiulus
occidentalis]
Length = 289
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 97/167 (58%), Gaps = 9/167 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TDV+ +KAE+ P PD+G++ FVD + A+P FEG GG+EL +++ AL
Sbjct: 53 IANTDVLVGIKAEIAAPDHAAPDRGRIEFFVDLTANADPEFEGTGGDELGQQIAGALAEA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +DLSSL +V+ + W L++D L++ G+L DA+ A+KAAL + IP
Sbjct: 113 YVSKRF-----LDLSSLCIVKNQQVWVLFVDILILELGGSLYDAVSIAVKAALYDLRIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQ--FDTSGVPVITTLTKVPFPLIV 165
+ V+ D +PE+++SD+ Q + VP TL+K+ +V
Sbjct: 168 LTVS--IGEDGKPEIEVSDDPHTQEPLAIANVPCFVTLSKIGSQFVV 212
>gi|119585138|gb|EAW64734.1| exosome component 7, isoform CRA_b [Homo sapiens]
Length = 226
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
Query: 14 LGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGID 73
+G P +P++G + FVDCS +A P FEGRGG++L E+++ L + KS +D
Sbjct: 1 MGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR-IFNNKSS----VD 55
Query: 74 LSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQP 133
L +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP V V + +
Sbjct: 56 LKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSK-- 113
Query: 134 EVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
++++SD+ + ++ VP I TL K+ + +V
Sbjct: 114 DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVV 147
>gi|195430734|ref|XP_002063403.1| GK21414 [Drosophila willistoni]
gi|194159488|gb|EDW74389.1| GK21414 [Drosophila willistoni]
Length = 296
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 89/161 (55%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P + P+ GK+ FVDCS A P FEGRGG +L+ EL ALQ+
Sbjct: 53 LANTDILVGVKTEIDVPDPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILALQNA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S D +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 113 YESPLS-----FDYRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALYNTKLP- 166
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V A ++ ISD + + + VP++ T+ K+
Sbjct: 167 -RVTASLLDAGITDLIISDNPYDCTRLEIGTVPILVTVCKI 206
>gi|194757229|ref|XP_001960867.1| GF11284 [Drosophila ananassae]
gi|190622165|gb|EDV37689.1| GF11284 [Drosophila ananassae]
Length = 296
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 74/121 (61%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ PS + P+ GK+ FVDCS A P FEGRGG +L+ EL +LQ+
Sbjct: 53 LANTDILVGVKTEIDVPSPLAPEYGKLEFFVDCSANATPDFEGRGGSDLAQELILSLQNA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
++ D SL ++ G+ CW LYID LV+ GNL DA+ A KAAL NT +P
Sbjct: 113 YESPQA-----FDYRSLCLIPGQQCWKLYIDILVLECGGNLHDAVSLAAKAALFNTKLPR 167
Query: 121 V 121
V
Sbjct: 168 V 168
>gi|195488381|ref|XP_002092290.1| GE11745 [Drosophila yakuba]
gi|194178391|gb|EDW92002.1| GE11745 [Drosophila yakuba]
Length = 296
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P+ + PD GK+ FVDCS A P FEGRGG +L+ EL +LQ+
Sbjct: 53 LANTDILVGVKTEIDVPNPLTPDFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQN- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ D +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 112 ----AYESPLAFDYRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLP- 166
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V A ++ ISD + + VP++ T+ K+
Sbjct: 167 -RVTATLLDAGITDLIISDNPYDCTRIGIETVPLLVTVCKI 206
>gi|195121612|ref|XP_002005314.1| GI19145 [Drosophila mojavensis]
gi|193910382|gb|EDW09249.1| GI19145 [Drosophila mojavensis]
Length = 296
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 89/161 (55%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P+ + P+ GK+ FVDCS A P FEGRGG +L+ EL +LQ+
Sbjct: 53 LANTDILVGVKTEIDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQN- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ D +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 112 ----AYESPYAFDYRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALYNTKLP- 166
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V A ++ ISD + + VP++ T+ K+
Sbjct: 167 -RVTATLLDAGVTDLIISDNPYDCTRIGIDAVPLLVTVCKI 206
>gi|195383888|ref|XP_002050657.1| GJ22278 [Drosophila virilis]
gi|194145454|gb|EDW61850.1| GJ22278 [Drosophila virilis]
Length = 296
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 88/161 (54%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P+ + P GK+ FVDCS A P FEGRGG +L+ EL +LQ+
Sbjct: 53 LANTDILVGVKTEIDVPNPLTPQFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQNA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ D +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 113 Y-----ESPFAFDYRTLCLIPGQQCWKLYIDILILECGGNLYDAVSLAAKAALYNTKLP- 166
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V A ++ ISD + + VP++ T+ K+
Sbjct: 167 -RVTATLLDAGVTDLIISDNPYDCTRIGIDAVPLLVTVCKI 206
>gi|194882669|ref|XP_001975433.1| GG20559 [Drosophila erecta]
gi|190658620|gb|EDV55833.1| GG20559 [Drosophila erecta]
Length = 296
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P+ + P+ GK+ FVDCS A P FEGRGG +L+ EL +LQ+
Sbjct: 53 LANTDILVGVKTEIDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQN- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ D +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 112 ----AYESPLAFDYRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLP- 166
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V A ++ ISD + + VP++ T+ KV
Sbjct: 167 -RVTATMLDAGITDLIISDNPYDCTRISIETVPLLVTVCKV 206
>gi|195170324|ref|XP_002025963.1| GL10119 [Drosophila persimilis]
gi|194110827|gb|EDW32870.1| GL10119 [Drosophila persimilis]
Length = 296
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 91/163 (55%), Gaps = 13/163 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ +K E+ P + P+ GK+ FVDCS A P FEGRGG +L+ EL AL++
Sbjct: 53 LANTDILVGIKTEIDVPDPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELVLALEN- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ D +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 112 ----AYESPLAFDYRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALHNTKLPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF----LQFDTSGVPVITTLTKV 159
V + A ++ ISD + L DT VP++ T+ K+
Sbjct: 168 VTASLLDAG--VTDLIISDNPYDCTRLTIDT--VPLLVTVCKI 206
>gi|194381296|dbj|BAG58602.1| unnamed protein product [Homo sapiens]
Length = 164
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT
Sbjct: 112 IFNNKS----SVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNT 163
>gi|195029661|ref|XP_001987690.1| GH22060 [Drosophila grimshawi]
gi|193903690|gb|EDW02557.1| GH22060 [Drosophila grimshawi]
Length = 296
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 89/161 (55%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P+ + P+ GK+ FVDCS A P FEGRGG +L+ EL +LQ+
Sbjct: 53 LANTDILVGVKTEIDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQNA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ D +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 113 Y-----ESPFAFDYRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLP- 166
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V A ++ ISD + + VP++ T+ K+
Sbjct: 167 -RVTATLMDAGITDLIISDNPYDCTRIGIDAVPLLVTVCKI 206
>gi|125811424|ref|XP_001361870.1| GA21043 [Drosophila pseudoobscura pseudoobscura]
gi|54637046|gb|EAL26449.1| GA21043 [Drosophila pseudoobscura pseudoobscura]
Length = 296
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 91/163 (55%), Gaps = 13/163 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ +K E+ P + P+ GK+ FVDCS A P FEGRGG +L+ EL AL++
Sbjct: 53 LANTDILVGIKTEIDVPDPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELVLALEN- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ D +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 112 ----AYESPLAFDYRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALHNTKLPQ 167
Query: 121 VHVAAEAASDEQPEVDISDEEF----LQFDTSGVPVITTLTKV 159
V + A ++ ISD + L DT VP++ T+ K+
Sbjct: 168 VTASLLDAG--VTDLIISDNPYDCTRLTIDT--VPLLVTVCKI 206
>gi|397475927|ref|XP_003809367.1| PREDICTED: exosome complex component RRP42-like [Pan paniscus]
Length = 164
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT
Sbjct: 112 IFNNKS----SVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNT 163
>gi|344255178|gb|EGW11282.1| Exosome complex exonuclease RRP42 [Cricetulus griseus]
Length = 226
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 85/150 (56%), Gaps = 13/150 (8%)
Query: 14 LGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGID 73
+G P +P +G + FVDCS A P FEGRGG++L E+++ L + KS +D
Sbjct: 1 MGTPKLEKPSEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR-IFNNKSS----VD 55
Query: 74 LSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVA--AEAASDE 131
LSSL + + CW L +D L++ GNL DA+ A+KAAL NT IP V V E A D
Sbjct: 56 LSSLCISPREHCWVLCVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKD- 114
Query: 132 QPEVDISDEEF--LQFDTSGVPVITTLTKV 159
+++SD+ + ++ VP I TL K+
Sbjct: 115 ---IELSDDPYDCIRLSVENVPCIVTLCKI 141
>gi|28573444|ref|NP_725517.2| Rrp42 [Drosophila melanogaster]
gi|28380797|gb|AAF58076.3| Rrp42 [Drosophila melanogaster]
gi|85857716|gb|ABC86393.1| IP10364p [Drosophila melanogaster]
Length = 296
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 89/161 (55%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P+ + P+ GK+ FVDCS A P FEGRGG +L+ EL +LQ+
Sbjct: 53 LANTDILVGVKTEIDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQN- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 112 ----AYESPLAFNYRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLP- 166
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V A ++ ISD + + VP++ T+ K+
Sbjct: 167 -RVTATMLDAGITDLIISDNPYDCTRIGIETVPLLVTVCKI 206
>gi|156542409|ref|XP_001601196.1| PREDICTED: exosome complex component RRP42-like [Nasonia
vitripennis]
Length = 291
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 98/161 (60%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+TD++ VK E+ P P++GK+ FVDCS A P+FEG+GGE+L+ E+S+ L
Sbjct: 53 IGNTDILVGVKVEIDTPYPDSPNEGKIEFFVDCSANATPSFEGKGGEDLANEISNVLA-- 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L +S ++LS L ++ K CW LY+D L++ GNL DA+ A+KAAL +T IP
Sbjct: 111 -LAYQS--PHAMNLSQLSILPHKKCWKLYVDILILECGGNLFDAVAVAVKAALYSTEIPK 167
Query: 121 VHVAAEAASDEQPEVDISDE--EFLQFDTSGVPVITTLTKV 159
V A + ++ +SD+ E + DT+ PV+ TL K+
Sbjct: 168 VKGAMLDGG--EADIVLSDDIYESEKLDTTNCPVLVTLCKI 206
>gi|195583790|ref|XP_002081699.1| GD11151 [Drosophila simulans]
gi|194193708|gb|EDX07284.1| GD11151 [Drosophila simulans]
Length = 281
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 9/161 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P+ + P+ GK+ FVDCS A P FEGRGG +L+ EL +L++
Sbjct: 38 LANTDILVGVKTEIDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLKN- 96
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 97 ----AYESPLAFNYRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLP- 151
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V A ++ ISD + + VP++ T+ K+
Sbjct: 152 -RVTATMLDAGITDLIISDNPYDCTRIGIETVPLLVTVCKI 191
>gi|313236425|emb|CBY11742.1| unnamed protein product [Oikopleura dioica]
Length = 288
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 85/141 (60%), Gaps = 8/141 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEG-RGGEELSAELSSALQH 59
+GST+++ VKAEL + S + D G++ VDCSP A P FEG RGGE++ AE++S
Sbjct: 56 IGSTELLVGVKAELEKASLVDGDAGRIEFSVDCSPNATPMFEGRRGGEDIEAEIAS---- 111
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L A +D L VV CW LY+D L++ GNL+DA A+KAAL +T +P
Sbjct: 112 -LFSRFYKAEEFMDRKKLTVVPNAWCWVLYVDILILEVGGNLVDASSIAVKAALRDTRLP 170
Query: 120 SVHVAAEAASDEQPEVDISDE 140
+++ E +++ ++ +SD+
Sbjct: 171 LLNI--EKGDEDEYDIQVSDD 189
>gi|313221392|emb|CBY32145.1| unnamed protein product [Oikopleura dioica]
Length = 288
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 85/141 (60%), Gaps = 8/141 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEG-RGGEELSAELSSALQH 59
+GST+++ VKAEL + S + D G++ VDCSP A P FEG RGGE++ AE++S
Sbjct: 56 IGSTELLVGVKAELEKASLVDGDAGRIEFSVDCSPNATPMFEGRRGGEDIEAEIAS---- 111
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L A +D L VV CW LY+D L++ GNL+DA A+KAAL +T +P
Sbjct: 112 -LFSRFYKAEEFMDRKKLTVVPNAWCWVLYVDILILEVGGNLVDASSIAVKAALRDTRLP 170
Query: 120 SVHVAAEAASDEQPEVDISDE 140
+++ E +++ ++ +SD+
Sbjct: 171 LLNI--EKGDEDEFDIQVSDD 189
>gi|390344513|ref|XP_791327.3| PREDICTED: exosome complex component RRP42-like [Strongylocentrotus
purpuratus]
Length = 150
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 5/116 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G V+ VKAE+G P+ + P +G + FVD S A P F GRGG+EL+AE+S+
Sbjct: 7 VGYWTVLVGVKAEMGPPNPLNPSRGGIEFFVDFSANASPKFAGRGGDELAAEISN----- 61
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+LG +D SL V+ G+ W LY D +V+ GNLLDA+ A+KAAL NT
Sbjct: 62 MLGLVYKNKKMLDYKSLCVIAGQCVWTLYADIVVLECGGNLLDAIALAVKAALYNT 117
>gi|330795359|ref|XP_003285741.1| hypothetical protein DICPUDRAFT_29826 [Dictyostelium purpureum]
gi|325084289|gb|EGC37720.1| hypothetical protein DICPUDRAFT_29826 [Dictyostelium purpureum]
Length = 290
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 94/180 (52%), Gaps = 22/180 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQP----------DKGKVAIF-VDCSPTAEPTFEGRGGEEL 49
+ T+V+ VKAE+ + +QP D K +F V+C P+A P FEG+G E L
Sbjct: 51 LSDTEVLVGVKAEI---THIQPKELTNTLQTFDTSKRLVFSVNCCPSASPEFEGKGSEFL 107
Query: 50 SAELSSALQ--HCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGA 107
+ EL L+ + + KS G D + L +V GK W LYID +V+ SDGNL DAL
Sbjct: 108 NIELGKQLERLYKFIFNKSNY-HGND-NCLSIVSGKYYWTLYIDAIVLDSDGNLFDALSI 165
Query: 108 AIKAALSNTGIPSVHVAAEAASDEQPEVDISD--EEFLQFDTSGVPVITTLTKVPFPLIV 165
A +AAL NT +P V A E+ ++SD E+ L P+ TLTK+ ++
Sbjct: 166 ATRAALYNTRLP--RVKAIQGEYEEITFEVSDDPEDTLSLSIENAPICVTLTKIGTQFVI 223
>gi|320169517|gb|EFW46416.1| exosome component 7 [Capsaspora owczarzaki ATCC 30864]
Length = 294
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 87/161 (54%), Gaps = 13/161 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD--CSPTAEPTFEGRGGEELSAELSSALQ 58
+G TDV+ VKAE+G P +P +G+ + VD + + F+ E EL+SA+
Sbjct: 52 LGLTDVLVGVKAEIGEPDQAKPTQGRFEVTVDFSSTSASAAAFDDDNTE---TELASAIA 108
Query: 59 HCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGI 118
L G+DLS+L +V G+ CW +YID L++ + GN D L A++AAL+NT I
Sbjct: 109 RTL--------KGVDLSALCIVPGEQCWVIYIDALILVAAGNAYDVLSLAVRAALANTRI 160
Query: 119 PSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
P V V+ + + EV + D VPVI TL+K+
Sbjct: 161 PKVEVSDDGHGRVELEVSDDPHHVTELDIRAVPVIVTLSKI 201
>gi|47208122|emb|CAF91040.1| unnamed protein product [Tetraodon nigroviridis]
Length = 376
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 80/140 (57%), Gaps = 13/140 (9%)
Query: 30 FVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLY 89
F S A P FEGRGGEEL ++S++L S +D + L + G+ CW LY
Sbjct: 1 FFVSSANATPEFEGRGGEELGVDISNSLYRVFNNKHS-----VDANKLCISPGEHCWVLY 55
Query: 90 IDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQ--PEVDISDEEF--LQF 145
+D L++ DGNL DA+ AIKAAL NT IP V + +SD++ E+++SD+ + ++
Sbjct: 56 VDVLLLQCDGNLYDAISIAIKAALFNTKIPKVFI----SSDDEGGKEIELSDDPYDCMRI 111
Query: 146 DTSGVPVITTLTKVPFPLIV 165
+ VP I TL KV IV
Sbjct: 112 NVENVPCIVTLCKVGHRHIV 131
>gi|225718446|gb|ACO15069.1| Exosome complex exonuclease RRP42 [Caligus clemensi]
Length = 250
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 87/162 (53%), Gaps = 14/162 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TDV+ VKAEL G + +VDCS A P FEGRGGE+L+ E++S L
Sbjct: 53 LSNTDVLVGVKAEL----CEHKPGGGLEFYVDCSANASPVFEGRGGEDLALEIASTLSSS 108
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDG-NLLDALGAAIKAALSNTGIP 119
K + S L V + + W L++D L++ +G NL D +A+KAAL T IP
Sbjct: 109 YSDNKL-----FNRSILNVFQNRYAWILHVDVLILEVEGGNLFDVASSAVKAALFATQIP 163
Query: 120 SVHVAAEAASDEQPEVDISDE--EFLQFDTSGVPVITTLTKV 159
VH+ PE+++S++ E + D S PV+ TL ++
Sbjct: 164 KVHIVD--VDGGVPEIELSEDPDECFRLDVSNAPVLVTLNRI 203
>gi|225709084|gb|ACO10388.1| Exosome complex exonuclease RRP42 [Caligus rogercresseyi]
Length = 288
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 92/170 (54%), Gaps = 19/170 (11%)
Query: 1 MGSTDVIASVKAEL--GRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQ 58
+ +TDV+ VKAEL RP G + +VDCS A P FEGRGGE+L+ E+SS L
Sbjct: 53 LANTDVLVGVKAELCEDRP-------GGLEFYVDCSANASPEFEGRGGEDLALEISSTLA 105
Query: 59 HCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSD-GNLLDALGAAIKAALSNTG 117
+ D S L V + + W L++D L++ + GNL D A+K+AL T
Sbjct: 106 SSYSDPRV-----FDPSVLHVFKNRYAWVLHVDVLILEVEGGNLFDVSSLAVKSALFCTQ 160
Query: 118 IPSVHVAAEAASDEQPEVDISD--EEFLQFDTSGVPVITTLTKVPFPLIV 165
+P VH+ PE+++S+ EE + + SG PV+ +L +V +IV
Sbjct: 161 VPRVHIV--DVDGGVPEIELSEDPEECFRLNVSGAPVLVSLNRVGHFVIV 208
>gi|56758238|gb|AAW27259.1| SJCHGC04772 protein [Schistosoma japonicum]
Length = 277
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 10/165 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ VK E+G+PS + ++G++ I V+C PTA +G EL+ L + LQ
Sbjct: 53 IGETFIVCCVKMEVGKPSLTRLNEGRIEINVECYPTATYRCNEKGASELAERLKTTLQ-- 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ I+L+SL + G+ CW +YID L++ GNLLDA IKAAL N +
Sbjct: 111 ----STYQSEFINLNSLCIQRGRQCWVIYIDLLILEGAGNLLDASSLVIKAALLNATQSN 166
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
+++ +D + SD E + +P+ T+ K+ I+
Sbjct: 167 SFLSSVFRND----TNTSDTEIQNCNEDMLPLFVTVHKIGNAYII 207
>gi|402587188|gb|EJW81123.1| 3' exoribonuclease, partial [Wuchereria bancrofti]
Length = 280
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 8/168 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GSTD++ VKAEL ++ + ++ FVDCS A P F GRGG+E + ELS+AL
Sbjct: 25 IGSTDLLIGVKAELISVESIAIYRNRLNFFVDCSANATPLFAGRGGDEFADELSAALD-- 82
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
DL L++ W L++D +++ DGN++DA G +KAAL +T I
Sbjct: 83 --AAYDNNYVLPDLKKLILSPMHA-WKLFVDIVLLQCDGNVIDAAGLGVKAALKDTEISK 139
Query: 121 VHVAAEAASDEQPEVDISDEE-FLQFDTSGVPVITTLTKVPFPLIVHN 167
V V A + + +D+ D+ + DTS VP+ ++ ++ IV N
Sbjct: 140 VIV--RPADEGKYTIDLPDDNTVWKLDTSRVPLFVSVNRLGTAKIVDN 185
>gi|312071046|ref|XP_003138427.1| 3' exoribonuclease [Loa loa]
gi|307766409|gb|EFO25643.1| 3' exoribonuclease [Loa loa]
Length = 307
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 8/168 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GSTD++ VKAEL + + ++ FVDCS A P F GRGGEE + ELS+AL
Sbjct: 52 IGSTDLLIGVKAELISVENIALYRNRLNFFVDCSANATPLFAGRGGEEFADELSAALD-- 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
DL L++ V W L++D +++ DGN++DA G +KAAL +T I
Sbjct: 110 --AAYDNNYVLPDLKKLILSPMHV-WKLFVDIVLLQCDGNVIDAAGLGVKAALKDTEISK 166
Query: 121 VHVAAEAASDEQPEVDISDEEFL-QFDTSGVPVITTLTKVPFPLIVHN 167
V V A + + +D+ D+ + + +TS VP+ ++ ++ IV N
Sbjct: 167 VIV--RPADEGKYTIDLPDDNTVWKLNTSRVPLFVSVNRLGSAKIVDN 212
>gi|196004466|ref|XP_002112100.1| hypothetical protein TRIADDRAFT_55798 [Trichoplax adhaerens]
gi|190585999|gb|EDV26067.1| hypothetical protein TRIADDRAFT_55798 [Trichoplax adhaerens]
Length = 288
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 9/163 (5%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
TDV+ +KAE+G+P + + G + +VDCS +G G+ + +L+ +L+
Sbjct: 56 TDVLVGIKAEIGQPKQERSNTGHLEFYVDCSSYNTTEIDGHIGD-FTTQLTKSLERIY-- 112
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
+ +DL SL ++ G+ W LYID +V+ GNLLD + A+KAAL NT IP V V
Sbjct: 113 ---DSENVLDLKSLTIIAGEQVWVLYIDAVVLECCGNLLDCISIAVKAALYNTRIPGVSV 169
Query: 124 AAEAASDE-QPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
E E + D +DE+ L D VPVI + K+ +V
Sbjct: 170 NDEEGVLELEISDDPNDEKKLSIDK--VPVIVSCNKIGHRYVV 210
>gi|449441009|ref|XP_004138276.1| PREDICTED: exosome complex component RRP42-like [Cucumis sativus]
Length = 184
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/56 (80%), Positives = 47/56 (83%)
Query: 110 KAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
KAALSNTGIP VHVAAEA +EQPEVD+SDEEFLQFDTSGVP I TLTKV IV
Sbjct: 58 KAALSNTGIPKVHVAAEALDNEQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIV 113
>gi|225718102|gb|ACO14897.1| Exosome complex exonuclease RRP42 [Caligus clemensi]
Length = 289
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 87/162 (53%), Gaps = 14/162 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TDV+ VKAEL G + +VDCS A P FEGRGGE+L+ E++S
Sbjct: 53 LSNTDVLVGVKAEL----CEHKPGGGLEFYVDCSANASPVFEGRGGEDLALEIASTPSSS 108
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDG-NLLDALGAAIKAALSNTGIP 119
K + S L V++ + W L++D L++ +G NL D +A+KAAL T IP
Sbjct: 109 YSDNKL-----FNRSILNVLQNRYAWILHVDVLILEVEGGNLFDVASSAVKAALFATQIP 163
Query: 120 SVHVAAEAASDEQPEVDISDE--EFLQFDTSGVPVITTLTKV 159
VH+ PE+++S++ E + D S PV+ TL ++
Sbjct: 164 KVHIVD--VDGGVPEIELSEDPDECFRLDVSNAPVLVTLNRI 203
>gi|298711453|emb|CBJ32592.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 239
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 91/158 (57%), Gaps = 9/158 (5%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
TDV+A+VK E+G P P G+V + V CS + P F+ R +++A LS AL+ +
Sbjct: 63 TDVLAAVKVEVGEPGLEAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSM-- 120
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVH- 122
G G G+DL +L +V+GK CW +++D LV+ +DGNLLDA A AL+ IP V
Sbjct: 121 --QGVG-GLDLDALGIVDGKFCWVVFVDILVLQADGNLLDASSFAAYTALNTARIPKVTP 177
Query: 123 VAAEAASDEQPEV--DISDEEFLQFDTSGVPVITTLTK 158
+ E + E+ +I D ++ T+ VPV T+++
Sbjct: 178 LVGEGGIYDDFEISSEIDDAVAIKGATN-VPVCLTMSR 214
>gi|66814304|ref|XP_641331.1| hypothetical protein DDB_G0280251 [Dictyostelium discoideum AX4]
gi|74855928|sp|Q54VM4.1|EXOS7_DICDI RecName: Full=Putative exosome complex exonuclease RRP42; AltName:
Full=Exosome component 7; AltName: Full=Ribosomal
RNA-processing protein 42
gi|60469358|gb|EAL67352.1| hypothetical protein DDB_G0280251 [Dictyostelium discoideum AX4]
Length = 324
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 91/210 (43%), Gaps = 48/210 (22%)
Query: 1 MGSTDVIASVKAELGR------PSAMQPDKGKVAIF-VDCSPTAEPTFEGRGGEELSAEL 53
+ T+V+ VKAE+ + Q D K +F V+C P+A P FEG+G E L+ EL
Sbjct: 51 LSQTEVLVGVKAEITHIQSEITSNLQQSDTSKRLVFSVNCCPSASPEFEGKGSEFLNIEL 110
Query: 54 SSALQHCL------------------------------------LGGKSGAGAGIDLSSL 77
S L+ G +G D +
Sbjct: 111 SKQLERLYSHPNVIKNLKLTNPIISNNNNNNNKIKEAEEGKEKEKEGDIITNSGDD-NCF 169
Query: 78 VVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDI 137
+V GK W LY+D +V+ SDGNL DAL A ++AL NT IP V A E+ ++
Sbjct: 170 SIVSGKYYWTLYVDAIVLDSDGNLFDALSIACRSALQNTRIP--RVKAIQGEYEEITFEV 227
Query: 138 SD--EEFLQFDTSGVPVITTLTKVPFPLIV 165
SD E+ L VP+ TLTK+ ++
Sbjct: 228 SDDPEDTLSLSIDNVPICVTLTKIGNQFVI 257
>gi|170577726|ref|XP_001894115.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
gi|158599437|gb|EDP37044.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
Length = 306
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 11/169 (6%)
Query: 1 MGSTDVIASVKAEL-GRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQH 59
+GSTD++ VKAEL +A+ + ++ FVDCS A P F GRGGEE + ELS+AL
Sbjct: 52 IGSTDLLIGVKAELISVDTAVY--RNRLNFFVDCSANATPLFAGRGGEEFADELSAALD- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
DL L++ W L++D +++ DGN++DA G +KAAL +T I
Sbjct: 109 ---AAYDNNYVLPDLKKLILSPMH-AWKLFVDIVLLQCDGNVIDAAGLGVKAALKDTEIS 164
Query: 120 SVHVAAEAASDEQPEVDISDEE-FLQFDTSGVPVITTLTKVPFPLIVHN 167
V V A + + +D+ D+ + DTS VP+ ++ ++ IV N
Sbjct: 165 KVIV--RPADEGKYTIDLPDDNTVWKLDTSRVPLFVSVNRLGTAKIVDN 211
>gi|148677124|gb|EDL09071.1| mCG23310, isoform CRA_a [Mus musculus]
Length = 213
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 13/130 (10%)
Query: 34 SPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGL 93
S A P FEGRGG++L E+++ L + KS +DL SL + + CW LY+D L
Sbjct: 8 SANATPEFEGRGGDDLGTEIANTLYR-IFNNKSS----VDLRSLCISPREHCWVLYVDVL 62
Query: 94 VISSDGNLLDALGAAIKAALSNTGIPSVHVA--AEAASDEQPEVDISDEEF--LQFDTSG 149
++ GNL DA+ A+KAAL NT IP V V E A D +++SD+ + ++
Sbjct: 63 LLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKD----IELSDDPYDCIRLSVEN 118
Query: 150 VPVITTLTKV 159
VP I TL K+
Sbjct: 119 VPCIVTLCKI 128
>gi|324510452|gb|ADY44370.1| Exosome complex exonuclease RRP42 [Ascaris suum]
Length = 303
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 8/160 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ STD++ VKAEL + + ++ FVDCS A P F GRGGE+L+ E++SAL
Sbjct: 52 LASTDLLIGVKAELTVVEDFEHYRNRINFFVDCSANATPLFVGRGGEDLAVEVTSALD-- 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
DL L++ W LY+D +++ GN+LDA G +KAAL NT I +
Sbjct: 110 --VAYDNPYVLPDLKKLILSPMHA-WKLYVDIVILECGGNILDAAGIGVKAALRNTEICN 166
Query: 121 VHVAAEAASDEQPEVDI-SDEEFLQFDTSGVPVITTLTKV 159
V V A + + VD+ +D + D S P+ ++ K+
Sbjct: 167 VIV--RPADEGKCAVDLANDNTVWKMDVSRAPLFVSVHKL 204
>gi|256066133|ref|XP_002570477.1| exonuclease [Schistosoma mansoni]
gi|353231507|emb|CCD77925.1| putative exosome complex exonuclease rrp42 (ribosomal rna
processing protein 42) [Schistosoma mansoni]
Length = 254
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 12/160 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ VK E+G+PS +G++ I V+C PTA + EL L + LQ
Sbjct: 30 IGETFIVCCVKMEVGKPSLTNTSEGRIEINVECYPTATHRCNEKAASELEERLKTTLQ-- 87
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN-TGIP 119
+ IDLS L + G+ CW +YID L++ GNLLDA +KAAL N T +
Sbjct: 88 ----SAYQLKFIDLSPLCIQRGRQCWVIYIDLLILEGAGNLLDASSLVVKAALLNATQLN 143
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
S+ ++ + E E + QF +P+ T+ K+
Sbjct: 144 SLLLSVFQNNSESLEAGVQ-----QFHGDMLPLFITVHKI 178
>gi|351695721|gb|EHA98639.1| Exosome complex exonuclease RRP42 [Heterocephalus glaber]
Length = 373
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 39 PTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSD 98
P FEGRGG++L E++S L + + +DL SL + + CW LY+D L++
Sbjct: 173 PEFEGRGGDDLGTEIASTLYRIF-----SSRSSVDLQSLCISPREHCWVLYVDVLLLECG 227
Query: 99 GNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTL 156
GNL DA+ A+KAAL NT IP V V + + ++++SD+ + +Q VP I TL
Sbjct: 228 GNLFDAISLAVKAALFNTRIPKVRVLEDEEGSK--DIELSDDPYDCMQLSVENVPCIVTL 285
Query: 157 TKV 159
K+
Sbjct: 286 CKI 288
>gi|70606424|ref|YP_255294.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius DSM 639]
gi|449066636|ref|YP_007433718.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius N8]
gi|449068910|ref|YP_007435991.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius Ron12/I]
gi|68567072|gb|AAY80001.1| exosome complex exonuclease RRP43-like protein [Sulfolobus
acidocaldarius DSM 639]
gi|449035144|gb|AGE70570.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius N8]
gi|449037418|gb|AGE72843.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius Ron12/I]
Length = 276
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 80/157 (50%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A VK E P P++G + + V+ P A TFE +E S EL+ +
Sbjct: 58 LGNTLVLAGVKLEEDSPYPDTPNQGNLIVNVELLPLAYETFEPGPPDENSIELARIVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ IDLS LV+ GK W L++D V+ DGN+LDA A AA+ +T +P
Sbjct: 118 LRDSKA-----IDLSKLVIAPGKKVWTLWVDVYVLDYDGNILDACMLASIAAIYDTKLPK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT 157
V V E E+ I+ EE L PV+T T
Sbjct: 173 VEV-------EGDEIKINKEERLSIPLVNYPVVTVTT 202
>gi|358255969|dbj|GAA57561.1| exosome complex component RRP42, partial [Clonorchis sinensis]
Length = 200
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 65/113 (57%), Gaps = 6/113 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK E+G+P + +PD+G++ I V+C PTA +G E++ L LQ
Sbjct: 53 IGETHVLGCVKMEVGKPLSNRPDEGRIEINVECYPTATYASTDKGANEIAENLKITLQSA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
+S A +DL L + G+ CW +YID L++ GN LDA AIKAAL
Sbjct: 113 Y---RSDA---LDLRRLCIQSGRQCWVVYIDLLLLEGGGNFLDAASLAIKAAL 159
>gi|301097627|ref|XP_002897908.1| exosome complex exonuclease RRP42-like protein [Phytophthora
infestans T30-4]
gi|262106656|gb|EEY64708.1| exosome complex exonuclease RRP42-like protein [Phytophthora
infestans T30-4]
Length = 295
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 74/156 (47%), Gaps = 5/156 (3%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
TDV+ASVK E+ P P+ G V + V C P+ GR EEL+ ELS + L
Sbjct: 56 TDVLASVKLEVASPLPEDPNAGIVQVDVSCCPSVSAKLYGRAVEELNVELSQLMTRLLCS 115
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
S +L ++ G+ W + ID +V S GNL D + AI AAL++T PSV +
Sbjct: 116 CPSA-----ELEKYCIIPGESVWSISIDVMVFESSGNLPDVISMAIYAALNDTIFPSVRL 170
Query: 124 AAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
D+ EVD P+ TL+K+
Sbjct: 171 VGVEGEDKTIEVDTDPAAGKLMMAQQWPICVTLSKI 206
>gi|242399325|ref|YP_002994749.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM
739]
gi|242265718|gb|ACS90400.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM
739]
Length = 269
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 11/165 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +K ELG P PD G + V+ P A PTFE +E + EL+ +
Sbjct: 51 LGNTQVLVGIKVELGEPFPDLPDMGVITTNVEFVPLASPTFEPGPPDESAIELARIIDRG 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ IDL LV+V GK+ ++ID V+ DGNLLDA G AAL +T IP
Sbjct: 111 IRESQA-----IDLEKLVIVPGKLVRVIFIDVHVLDHDGNLLDASGIGAIAALLSTKIPK 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V +E+ E + EE+ + +P+ TL K+ L+V
Sbjct: 166 VD------YNEEIEEVVMLEEYEKLPVKRIPIPVTLAKIGGNLVV 204
>gi|408382268|ref|ZP_11179813.1| exosome complex RNA-binding protein Rrp42 [Methanobacterium
formicicum DSM 3637]
gi|407814924|gb|EKF85546.1| exosome complex RNA-binding protein Rrp42 [Methanobacterium
formicicum DSM 3637]
Length = 266
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 76/159 (47%), Gaps = 12/159 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T +I K ++G P P+ G + + P A P FE E S ELS C
Sbjct: 53 IGNTQIIVGAKPQIGEPFPDTPNVGVLITNSELVPMAAPNFEAGPPNETSVELSRVTDRC 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ GK +DL LV++ GK W +++D VI DGNL+DA AAL NT IPS
Sbjct: 113 VREGKV-----VDLEKLVIIPGKKVWMIFLDLHVIDYDGNLMDAAVLGSVAALMNTKIPS 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
+ E EV I E + + P++ TL K+
Sbjct: 168 TTI-------EDDEVVIDYETMVPIPIAEQPLMCTLAKI 199
>gi|348680463|gb|EGZ20279.1| hypothetical protein PHYSODRAFT_491455 [Phytophthora sojae]
Length = 295
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 73/156 (46%), Gaps = 5/156 (3%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
TDV+ASVK E+ P P G V + V C P+ GR EEL+ ELS + L
Sbjct: 56 TDVLASVKLEVAPPLPEAPSAGIVQVAVSCCPSVSAKLYGRAVEELNVELSQLMTRLLCS 115
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
S +L ++ G+ W + ID +V S GNL D + AI AAL++T PSV +
Sbjct: 116 CPSA-----ELGKYCIIPGESVWAISIDVMVFESSGNLPDVISMAIYAALNDTVFPSVRL 170
Query: 124 AAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
D+ EVD P+ TL+K+
Sbjct: 171 VGVEGEDKTIEVDTDPAAGRLMTAQHWPICVTLSKI 206
>gi|307594959|ref|YP_003901276.1| 3' exoribonuclease [Vulcanisaeta distributa DSM 14429]
gi|307550160|gb|ADN50225.1| 3' exoribonuclease [Vulcanisaeta distributa DSM 14429]
Length = 283
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 8/159 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A VK E+G+P PD+G + + ++ +PTA P E +E + E++ +
Sbjct: 58 LGNTKVMAGVKVEVGKPFEDTPDEGALIVNLEIAPTASPDIEPGPPDENAIEIARVVDRA 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ SG +D SL +V GK W L++D V++ DGNL+DA A AAL NT +P
Sbjct: 118 I--RHSGF---LDFKSLSIVTGKHAWFLWVDIYVLNHDGNLVDASTIAAVAALMNTALPK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
V + + ++D S L+ +T +P+ T K+
Sbjct: 173 VEL---DPAGNILKIDRSARSPLRLNTDKLPLTITYVKI 208
>gi|57641568|ref|YP_184046.1| exosome complex RNA-binding protein Rrp42 [Thermococcus
kodakarensis KOD1]
gi|73919277|sp|Q5JIR7.1|ECX2_PYRKO RecName: Full=Probable exosome complex exonuclease 2
gi|57159892|dbj|BAD85822.1| exosome subunit Rrp42p homolog, 3'-5' exoribonuclease [Thermococcus
kodakarensis KOD1]
Length = 272
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +KAELG P PD+G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGDTQVLVGIKAELGEPFPDLPDRGVITTNVELVPLASPTFEPGPPDENAIELARVVDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ +DL LV+V GK+ ++ID V+ GNLLDA G AAL +T +P
Sbjct: 114 IRESQA-----VDLEKLVIVPGKLVRVIFIDVHVLDHGGNLLDASGIGAIAALLSTKLPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V+ ++E EV+I D E+ + VP+ T K+ ++V
Sbjct: 169 VNY-----NEETGEVEILD-EYEPLPVNHVPIPVTFAKIGNSIVV 207
>gi|410930716|ref|XP_003978744.1| PREDICTED: exosome complex component RRP45-like [Takifugu rubripes]
Length = 386
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V EL P +P++G + ++ SP A P FE ELS +L+ L+ C
Sbjct: 50 LGETRVMAQVSCELVAPKESRPNEGILFFNIELSPMASPAFEAGRQSELSVKLNRQLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGNL+DA A ALS+ P
Sbjct: 110 LRNSKC-----IDTESLCVVSGEKVWQIRVDVHLLNHDGNLMDAASIAAITALSHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V E + PE
Sbjct: 165 VSSVGEEITVFSPE 178
>gi|390960832|ref|YP_006424666.1| exosome complex RNA-binding protein Rrp42 [Thermococcus sp. CL1]
gi|390519140|gb|AFL94872.1| exosome complex RNA-binding protein Rrp42 [Thermococcus sp. CL1]
Length = 269
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 90/169 (53%), Gaps = 12/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +K ++G P PD+G + V+ P A P+FE +E + EL+ +
Sbjct: 51 LGNTQVLVGIKVDMGEPFPDLPDRGVITTNVELVPLASPSFEPGPPDENAIELARVVDRG 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA ++L LV+V GK+ ++ID V+ DGNLLDA G AAL +T IP
Sbjct: 111 I--RESGA---VELEKLVIVPGKLVRVVFIDVHVLDHDGNLLDATGIGAIAALLSTKIPK 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV-PFPLIVHNL 168
V ++E EV++ D E+ VP+ T K+ P LI NL
Sbjct: 166 V-----VYNEETDEVEVLD-EYEPLPVRRVPIPVTFAKIGPSLLIDPNL 208
>gi|302348935|ref|YP_003816573.1| exosome complex exonuclease 2 [Acidilobus saccharovorans 345-15]
gi|302329347|gb|ADL19542.1| Probable exosome complex exonuclease 2 [Acidilobus saccharovorans
345-15]
Length = 280
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ VK E+G P P++G + + + +P A PTFE +E + ELS +
Sbjct: 58 LGNTQVLVGVKLEVGIPYRDTPNEGVLQVNSELTPVASPTFEPGPPDENAVELSRVIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L K+ IDLSSLV+ G+ W L+ID V+ DGN DA + AAL NT +P
Sbjct: 118 LRDPKA-----IDLSSLVIRPGEKAWVLWIDIYVLDYDGNYFDASMLGVMAALMNTKVP 171
>gi|410932317|ref|XP_003979540.1| PREDICTED: exosome complex component RRP45-like [Takifugu rubripes]
Length = 312
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V EL P +P++G + ++ SP A P FE ELS +L+ L+ C
Sbjct: 50 LGETRVMAQVSCELVAPKESRPNEGILFFNIELSPMASPAFEAGRQSELSVKLNRQLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGNL+DA A ALS+ P
Sbjct: 110 LRNSKC-----IDTESLCVVSGEKVWQIRVDVHLLNHDGNLMDAASIAAITALSHFRRPD 164
Query: 121 V 121
V
Sbjct: 165 V 165
>gi|47213776|emb|CAF92665.1| unnamed protein product [Tetraodon nigroviridis]
Length = 379
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V EL P +P++G + ++ SP A P FE ELS L+ L+ C
Sbjct: 50 LGETRVMAQVSCELVAPKESRPNEGILFFNIELSPLASPAFEAGRQSELSVNLNRQLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGNL+DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVSGEKVWQIRVDVHMLNHDGNLMDAASIAAITALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V + E PE
Sbjct: 165 VGIVGEEIKVFSPE 178
>gi|348521108|ref|XP_003448068.1| PREDICTED: exosome complex component RRP45-like [Oreochromis
niloticus]
Length = 410
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V EL P +P++G + ++ SP A P FE ELS +L+ L+ C
Sbjct: 50 LGQTRVMAQVSCELVAPKENRPNEGIMFFNIELSPMASPGFEQGRQSELSVKLNRQLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++DGNL+DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVSGEKVWQIRVDVHTLNNDGNLMDAASIAAITALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V + + PE
Sbjct: 165 VSTQGQEVTVYSPE 178
>gi|452825084|gb|EME32083.1| exosome complex component RRP42 [Galdieria sulphuraria]
Length = 275
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 5/131 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T+V+ VK E+G D ++ V+CS +A F GR E S+EL +AL+
Sbjct: 51 LGETEVLVGVKVEVGDVVESSNDNVQLLFTVECSGSASADFLGREAESWSSELQNALESA 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
A D L +V GK CW +D LV+ + GN++DA+ A + ALS T +P
Sbjct: 111 Y-----RAANVFDDERLSLVPGKFCWLFKVDILVLDTGGNMMDAISMATRTALSTTLVPR 165
Query: 121 VHVAAEAASDE 131
VH+ S E
Sbjct: 166 VHIVQSEGSFE 176
>gi|432843370|ref|XP_004065602.1| PREDICTED: exosome complex component RRP45-like [Oryzias latipes]
Length = 427
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V EL P +P++G + ++ SP A P FE ELS +L+ L+ C
Sbjct: 50 LGQTRVMAQVSCELVAPKESRPNEGIMFFNIELSPLASPAFEQGRQSELSVKLNRQLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D ++++DGNL+DA A AAL + P
Sbjct: 110 LRNSKC-----IDTESLCVVSGEKVWQIRVDVHMLNNDGNLMDASSIAAIAALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V E + PE
Sbjct: 165 VAVQGEEVTVYSPE 178
>gi|350402638|ref|XP_003486552.1| PREDICTED: exosome complex component RRP45-like [Bombus impatiens]
Length = 410
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA V ++ +P +P++G + I V+ +P A F+G E+S +S L+ C
Sbjct: 50 LGQTRVIAQVTCDIQQPKTSRPNEGMLHINVELNPMAAQHFDGGRQSEISVLISRQLEKC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K IDL SL ++ K W+L +D VI+ DGNL+D A AALS+ P
Sbjct: 110 YQDSKC-----IDLESLCIIADKQVWNLRVDVNVINHDGNLIDCASIATLAALSHFHRPD 164
Query: 121 V 121
V
Sbjct: 165 V 165
>gi|327287178|ref|XP_003228306.1| PREDICTED: exosome complex exonuclease RRP42-like [Anolis
carolinensis]
Length = 148
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGGEEL E+++ L
Sbjct: 53 LGHTDILVGVKAEMGVPKLDRPNEGFLEFFVDCSANATPEFEGRGGEELGTEIANTLYRI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGL 93
S +DL L + + CW LY+D L
Sbjct: 113 FDNESS-----VDLKLLCISPREHCWVLYVDVL 140
>gi|440292961|gb|ELP86133.1| exosome complex exonuclease RRP42, putative [Entamoeba invadens
IP1]
Length = 265
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 83/156 (53%), Gaps = 14/156 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T+V+ +K EL P A ++G+ + V + G + ++S ++
Sbjct: 51 LGRTEVVVGIKCELEEPQATSSNEGRYTVLVR-----------KSGADNVRDVS--IEQM 97
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ AG + L L V GK+CW +Y+D +V+ DGN++D + A++AAL +T IP
Sbjct: 98 ITVSLENAGKEM-LKKLCVSPGKLCWVVYVDAIVVEDDGNVMDCVSLAVRAALLSTLIPV 156
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V V + A + Q +++ + +F+ F+ S +PV +L
Sbjct: 157 VTVISGDAEEVQIDINKDNVQFIHFEPSALPVCVSL 192
>gi|67476142|ref|XP_653674.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56470674|gb|EAL48311.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|407034971|gb|EKE37468.1| 3' exoribonuclease family protein [Entamoeba nuttalli P19]
gi|449710101|gb|EMD49236.1| 3' exoribonuclease family protein [Entamoeba histolytica KU27]
Length = 265
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 14/164 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T+V+ VK ELG PS + P+ G+ + V T R E ++
Sbjct: 51 LGKTEVVVGVKCELGEPSVLTPESGRYNVLV----KQVGTMTSRDVE---------IEKM 97
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L AG + L L V++GK+CW +Y+D +V+ DGN++D G A++AAL NT IP
Sbjct: 98 ILVSLENAGKDM-LQELCVLKGKLCWIIYVDVVVVEDDGNVMDCTGLAVRAALLNTLIPI 156
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLI 164
V+V + + Q ++D + +F +F VP+ +L + I
Sbjct: 157 VNVISGDSDTVQVDIDKDNVQFKKFKPESVPLCVSLIQFEKEFI 200
>gi|340728541|ref|XP_003402580.1| PREDICTED: exosome complex component RRP45-like [Bombus terrestris]
Length = 410
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA V ++ +P +P++G + I V+ +P A F+G E+S +S L+ C
Sbjct: 50 LGQTRVIAQVTCDIQQPKTSRPNEGMLHINVELNPMAAQHFDGGRQSEISILISRQLEKC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K IDL SL ++ K W+L +D VI+ DGNL+D A AALS+ P
Sbjct: 110 YQDSKC-----IDLESLCIIADKQVWNLRVDVNVINHDGNLIDCASIATLAALSHFHRPD 164
Query: 121 V 121
V
Sbjct: 165 V 165
>gi|167392099|ref|XP_001740016.1| exosome complex exonuclease RRP42 [Entamoeba dispar SAW760]
gi|165896056|gb|EDR23596.1| exosome complex exonuclease RRP42, putative [Entamoeba dispar
SAW760]
Length = 265
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 14/164 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T+V+ VK ELG PS + P+ G+ + V T R E ++
Sbjct: 51 LGKTEVVVGVKCELGEPSILTPESGRYNVLV----KQVGTMTSRDVE---------IEKM 97
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L AG + L L V++GK+CW +Y+D +V+ DGN++D G A++AAL NT IP
Sbjct: 98 ILVSLENAGKDM-LQELCVLKGKLCWIIYVDVVVVEDDGNVMDCTGLAVRAALLNTLIPI 156
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLI 164
V+V + + Q ++D + +F +F VP+ +L + I
Sbjct: 157 VNVISGDSDTVQVDIDKDNVQFKKFKPESVPLCVSLVQFEKEFI 200
>gi|341582107|ref|YP_004762599.1| exosome complex RNA-binding protein Rrp42 [Thermococcus sp. 4557]
gi|340809765|gb|AEK72922.1| exosome complex RNA-binding protein Rrp42 [Thermococcus sp. 4557]
Length = 269
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 12/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ VK ++G P PD+G + V+ P A P+FE +E + EL+ +
Sbjct: 51 LGNTQVLVGVKVDMGEPFPDLPDRGVITTNVELVPLASPSFEPGPPDENAIELARVVDRG 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L LV+V GK+ ++ID V+ DGNLLDA G AAL +T +P
Sbjct: 111 IRESQA-----VELEKLVIVPGKLVRVVFIDVHVLDHDGNLLDASGIGAIAALLSTRMPK 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV-PFPLIVHNL 168
V ++E EV++ D E+ +P+ T+ K+ P L+ NL
Sbjct: 166 V-----VYNEETDEVEVLD-EYEPLPVRRIPIPVTMAKIGPNILVDPNL 208
>gi|375082087|ref|ZP_09729157.1| exosome complex RNA-binding protein Rrp42 [Thermococcus litoralis
DSM 5473]
gi|374743300|gb|EHR79668.1| exosome complex RNA-binding protein Rrp42 [Thermococcus litoralis
DSM 5473]
Length = 269
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +K + G P P+ G + V+ P A PTFE +E + EL+ +
Sbjct: 51 LGNTQVLVGIKVDFGEPFPDLPEMGVMTTNVEFVPLASPTFEPGPPDERAIELARVVDRG 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ +DLS LV+V GK+ ++ID ++ DGNLLDA G AAL +T IP
Sbjct: 111 IRESQA-----VDLSKLVIVPGKLVRVIFIDVHILDHDGNLLDASGIGAIAALLSTKIPK 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V E+ EV + D E+ + VP+ + K+ LIV
Sbjct: 166 VEYDEESG-----EVKLLD-EYEPLPVTKVPIPVSFAKIGNALIV 204
>gi|159040755|ref|YP_001540007.1| exosome complex RNA-binding protein Rrp42 [Caldivirga
maquilingensis IC-167]
gi|157919590|gb|ABW01017.1| 3' exoribonuclease [Caldivirga maquilingensis IC-167]
Length = 279
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 10/165 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T VIA +K ELG+P P++G + + ++ P A PTFE +E + E++ +
Sbjct: 56 LGNTKVIAGIKFELGKPFEDTPNEGNLIVNLETPPLAAPTFEPGPPDENAIEIARIIDRA 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L I L LV++ GK + +++D V++ DGNL+D+ A +A++N +P
Sbjct: 116 LRHSNY-----IPLRDLVIIPGKSVYSMWVDIYVLNHDGNLIDSSMLAAVSAIANAQVPR 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
+ E ++D S + L + +P+ T K+ LIV
Sbjct: 171 AIIDGENV-----KLDKSTKIPLNINPQNMPLTVTYYKIDKYLIV 210
>gi|20093818|ref|NP_613665.1| exosome complex RNA-binding protein Rrp42 [Methanopyrus kandleri
AV19]
gi|29336820|sp|Q8TYC2.1|ECX2_METKA RecName: Full=Probable exosome complex exonuclease 2
gi|19886741|gb|AAM01595.1| Predicted exosome subunit, predicted exoribonuclease related to
RNase PH [Methanopyrus kandleri AV19]
Length = 267
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T ++ VK E+GRP P++G +A+ + P A+P+FE +E + ELS +
Sbjct: 53 LGNTQLVVGVKLEVGRPYPDSPNEGALAVNAELVPLADPSFEPGPPDENAIELSRVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + IDL L + EG+ CW ++D V+ DGNL DA +ALS T +P
Sbjct: 113 IRESEM-----IDLEELCIEEGEHCWVTFVDIHVLDHDGNLFDASMIGSVSALSITEVPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
AE D EV++ +E+ + P+ T+ KV L+V
Sbjct: 168 ----AEVVDD---EVEVMEEDTEPLAINDFPISVTIAKVGEYLLV 205
>gi|195334771|ref|XP_002034050.1| GM21652 [Drosophila sechellia]
gi|194126020|gb|EDW48063.1| GM21652 [Drosophila sechellia]
Length = 467
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 6/104 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P+ + P+ GK+ FVDCS A P FEGRGG +L+ EL +L++
Sbjct: 53 LANTDILVGVKTEIDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLKNA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDA 104
+ + +L ++ G+ CW LYID ++ + LLDA
Sbjct: 113 Y-----ESPLAFNYRTLCLIPGQQCWKLYID-ILNQNSARLLDA 150
>gi|240104092|ref|YP_002960401.1| exosome complex RNA-binding protein Rrp42 [Thermococcus
gammatolerans EJ3]
gi|259645408|sp|C5A2B8.1|ECX2_THEGJ RecName: Full=Probable exosome complex exonuclease 2
gi|239911646|gb|ACS34537.1| 3'-5' exoribonuclease, exosome complex exonuclease 2, Rrp42p-like
protein (Rrp42p) [Thermococcus gammatolerans EJ3]
Length = 273
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +K ++G P PD+G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGGTRVLVGIKVDVGEPFPDLPDRGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L LV+V GK+ ++ID V+ DGNL DA G A AAL T IP
Sbjct: 114 IRESQA-----VELEKLVIVPGKLVRVVFIDVHVLDHDGNLFDATGLAAMAALMTTKIPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V ++E E+ I +E+ VP+ T K+ +IV
Sbjct: 169 VEY-----NEETGEI-IKLDEYEPLPVKHVPIPVTFAKIGSSIIV 207
>gi|410721457|ref|ZP_11360792.1| RNase PH-related exoribonuclease [Methanobacterium sp. Maddingley
MBC34]
gi|410598914|gb|EKQ53477.1| RNase PH-related exoribonuclease [Methanobacterium sp. Maddingley
MBC34]
Length = 266
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ K ++G P P+ G + + P A P FE E S ELS C
Sbjct: 53 IGKTQIVVGAKPQIGEPFPDTPNVGVLITNSELLPMAAPNFEAGPPNETSVELSRVTDRC 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ GK+ +DL LV++ GK W +++D ++ DGNL+DA AAL NT IPS
Sbjct: 113 IREGKT-----VDLEKLVIIPGKKVWMIFLDLHIVDYDGNLMDAAVLGSLAALMNTKIPS 167
Query: 121 VHV 123
+
Sbjct: 168 TTI 170
>gi|212223176|ref|YP_002306412.1| exosome complex RNA-binding protein Rrp42 [Thermococcus onnurineus
NA1]
gi|226740342|sp|B6YSE7.1|ECX2_THEON RecName: Full=Probable exosome complex exonuclease 2
gi|212008133|gb|ACJ15515.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
Length = 272
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +K ++G P P+KG + V+ P A P+FE +E + EL+ +
Sbjct: 54 LGNTQVLVGIKVDMGEPFPDLPEKGVITTNVELVPLASPSFEPGPPDERAIELARVVDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA ++L LV+V GK+ ++ID V+ DGNLLDA G AAL + +P
Sbjct: 114 I--RESGA---VELEKLVIVPGKLVRVVFIDVHVLDHDGNLLDASGIGAIAALMSAKMPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V +E EV I D E+ S +P+ T+ KV L+V
Sbjct: 169 V-----VYDEESGEVQILD-EYEPLPVSKMPIPVTIAKVGGNLLV 207
>gi|315229928|ref|YP_004070364.1| exosome complex exonuclease 2 [Thermococcus barophilus MP]
gi|315182956|gb|ADT83141.1| exosome complex exonuclease 2 [Thermococcus barophilus MP]
Length = 270
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 20/163 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +K +LG P PDKG + V+ P A PTFE +E + EL+ +
Sbjct: 51 LGNTQVLVGIKLDLGEPFPDLPDKGVMTTNVELVPLASPTFEPGPPDERAIELARVVDRG 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ IDL LV++ GK+ ++ID V+ DGNL+DA G AAL +T +P
Sbjct: 111 IRESQA-----IDLEKLVIIPGKLVRVVFIDVHVLDHDGNLVDATGIGAIAALLSTKMPK 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPL 163
+ ++E EV + DE +PV TK+P P+
Sbjct: 166 IE-----YNEETGEVMMLDE------YEPLPV----TKIPIPV 193
>gi|14591332|ref|NP_143410.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus horikoshii
OT3]
gi|29336585|sp|O59224.1|ECX2_PYRHO RecName: Full=Probable exosome complex exonuclease 2
gi|3257977|dbj|BAA30660.1| 274aa long hypothetical autoantigen like protein [Pyrococcus
horikoshii OT3]
Length = 274
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+ +K LG P P+ G + V+ P A PTFE +E + EL+
Sbjct: 54 LGSTQVLVGIKTTLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVTDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L +V+V GK+ ++ID V+ DGNL+DA+G A AAL N +P
Sbjct: 114 IRESRA-----LNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIASIAALLNAKVPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V ++E EV+I +E+ +P+ T K+ L+V
Sbjct: 169 VEY-----NEETGEVEILEEKE-PLPVERIPIPVTFAKIGNILVV 207
>gi|389860736|ref|YP_006362976.1| ribosomal RNA-processing protein RRP42 [Thermogladius
cellulolyticus 1633]
gi|388525640|gb|AFK50838.1| ribosomal RNA-processing protein RRP42 [Thermogladius
cellulolyticus 1633]
Length = 282
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA VKAELG P +P++G + + + P A P+FE E + E++ +
Sbjct: 58 LGGTQVIAGVKAELGTPFEDRPNEGVLQVHAEFVPLASPSFEPGPPNEEAIEVARVIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K +DLS LV+ G++ W +Y D VI DGN+LD A AL+ + +P
Sbjct: 118 LREPKV-----VDLSKLVIQPGRLAWVIYDDVYVIDHDGNILDTGMIASMIALATSKLPR 172
Query: 121 VHVAAE 126
+ AE
Sbjct: 173 LDTTAE 178
>gi|328790286|ref|XP_624243.3| PREDICTED: exosome complex exonuclease RRP45-like [Apis mellifera]
Length = 414
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA V ++ +P +P++G + I V+ +P A F+ E+S +S L+ C
Sbjct: 50 LGQTRVIAQVTCDIQQPKTSRPNEGMLHINVELNPMAAQHFDSGRQSEISILISRQLEKC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K IDL SL ++ K W+L +D VI+ DGNL+D A AALS+ P
Sbjct: 110 YQDSKC-----IDLESLCIIADKKVWNLRVDINVINHDGNLIDCASIATLAALSHFHRPD 164
Query: 121 V 121
V
Sbjct: 165 V 165
>gi|348541677|ref|XP_003458313.1| PREDICTED: exosome complex component RRP43-like [Oreochromis
niloticus]
Length = 277
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 71/146 (48%), Gaps = 10/146 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T +I +KAEL P+ P KG + VD P F G GEE A A Q
Sbjct: 53 LGNTTIICGIKAELANPTVEAPGKGYIVPNVDLPPLCSSRFRPGPPGEEAQA----ASQ- 107
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + I L + GK+CW LY D + + DGN+LDA A+ AAL NT +P
Sbjct: 108 -FIADVIESSEVIKTEDLSIDRGKLCWVLYCDLMCLDYDGNILDACVIALLAALKNTRLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQF 145
V + E ++ PEV++ LQ
Sbjct: 167 EVTINKETSA---PEVNLEKRWELQI 189
>gi|328767734|gb|EGF77783.1| hypothetical protein BATDEDRAFT_91450 [Batrachochytrium
dendrobatidis JAM81]
Length = 319
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 25 GKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKV 84
G++ V+CSP A + R E++ E + L L +G GIDL L ++ G
Sbjct: 106 GRIVCSVECSPAASIILDSRAIEDMCNEYTQVLNRTL----NGPHGGIDLQKLCIIPGST 161
Query: 85 CWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEF-L 143
CW + +D L++ GN+LD + A++ AL NT +P V +D E DI+D+E +
Sbjct: 162 CWVVSVDVLIMDYGGNVLDTVLMAVRGALHNTRLPKTKV---EETDGHFEFDIADDETEV 218
Query: 144 QFDTSGVPVITTLTKV 159
+PV TL+++
Sbjct: 219 LCGRENIPVALTLSRI 234
>gi|432896001|ref|XP_004076251.1| PREDICTED: exosome complex component RRP43-like [Oryzias latipes]
Length = 277
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+GST VI +KAEL P+ P KG + VD P F G GE+ A+ SS
Sbjct: 53 LGSTTVICGIKAELANPTVEAPGKGYIVPNVDLPPLCSSRFRPGPPGEQ--AQASSQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + I L + GK+CW LY D + + DGN+LDA A+ AAL NT +P
Sbjct: 109 --IADVIESSEIIKPEDLCIDRGKLCWVLYCDIMCLDYDGNILDACIIALLAALKNTRLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFL 143
V V +PE+D+ + L
Sbjct: 167 KVTVNKATC---KPEIDLKERHEL 187
>gi|15920654|ref|NP_376323.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus tokodaii str.
7]
gi|29336897|sp|Q975G9.1|ECX2_SULTO RecName: Full=Probable exosome complex exonuclease 2
gi|342306197|dbj|BAK54286.1| exosome core subunit Rrp42 [Sulfolobus tokodaii str. 7]
Length = 275
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK E P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGDTMVLAGVKLEEEEPFPDTPNQGNLVVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DLS LV++ GK W ++D V+ GN+LDA A AAL NT +P
Sbjct: 118 LRDSKA-----VDLSKLVIIPGKKVWTAWVDVYVLDYGGNVLDACTLAAVAALYNTKLPK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVPFPLIV 165
V + E V I EE PV+T T+ K+ L+V
Sbjct: 173 VEI-------EGDNVKIIKEEKTDVTPIAYPVVTVTVAKIGKYLVV 211
>gi|440896423|gb|ELR48345.1| Exosome complex exonuclease RRP43, partial [Bos grunniens mutus]
Length = 291
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE G P PDKG V VD SP F G GEE A+++S
Sbjct: 67 LGNTTVICGIKAEFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEE--AQVASQF-- 122
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + ++ DGN+LDA A+ AAL N +P
Sbjct: 123 --IADVIENSQIIQKEDLCISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLP 180
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 181 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSF 212
>gi|426236417|ref|XP_004012165.1| PREDICTED: exosome complex component RRP43 [Ovis aries]
Length = 276
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE G P PDKG V VD SP F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFGAPPTDAPDKGYVVPNVDLSPLCSWRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + ++ DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSF 198
>gi|209876656|ref|XP_002139770.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209555376|gb|EEA05421.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 272
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 17/154 (11%)
Query: 5 DVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGG 64
D++ ++K E+ P+ P G + I +DC + E+ + +LS+ +
Sbjct: 56 DILTTIKCEVSSPTK-NPTWGDIIINIDCP------INDKNDEDYTLDLSNTI------- 101
Query: 65 KSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVA 124
K DLS L ++ +CW+++ID ++IS+ GN+LD L +I AL N+ IP V
Sbjct: 102 KDLCFNNFDLSKLCILSNYLCWNIFIDIMIISNGGNILDWLVFSIHCALRNSRIPQVTAK 161
Query: 125 AEAASDEQP---EVDISDEEFLQFDTSGVPVITT 155
E E+ +V+ EE + F G+P++ T
Sbjct: 162 VEIEDGEEKSNLQVNPLIEEGIPFPIKGIPLVIT 195
>gi|291226456|ref|XP_002733208.1| PREDICTED: exosome component 8-like [Saccoglossus kowalevskii]
Length = 275
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T VI +KAEL P+ +P KG V VD P P F E + +S +
Sbjct: 53 LGNTTVICGIKAELCTPTNDEPKKGFVVPNVDLPPLCSPRFRPGPPSEQAQVVSQFIADV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ++ L + EGK+ W LY D + + DGN++DA ++ AAL N +PS
Sbjct: 113 LKDSKM-----VNHEDLCIAEGKIVWVLYCDMMCLDYDGNVIDACIISLLAALRNVALPS 167
Query: 121 VHVAAEAAS 129
+ V E A
Sbjct: 168 IEVDEETAK 176
>gi|325187967|emb|CCA22510.1| exosome complex exonuclease RRP42like protein putati [Albugo
laibachii Nc14]
Length = 298
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 9/159 (5%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPT-AEPTFEGRGGEELSAELSSALQHCLL 62
TDV+ASVK E+ PS P+ G + + V C P+ + GR +E++ ELS +Q
Sbjct: 55 TDVLASVKLEVLSPSLEAPNSGVLNVNVTCFPSISSKITNGRALDEINIELSQLMQRIFT 114
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVH 122
KS IDL+ +V + W +++D +V S G+L D + A+ AAL T P V
Sbjct: 115 SHKS-----IDLNKFCIVPSQFVWGIFVDVVVYESTGSLPDLISIAMYAALKKTLFPCVR 169
Query: 123 VAAEAASDE--QPEVDISDEEFLQFDTSGVPVITTLTKV 159
+ ++ Q E D + E+L T P+ TT+ K+
Sbjct: 170 MLGVEGDEKILQVERDPAAGEYLA-ATVCFPLCTTICKI 207
>gi|397652060|ref|YP_006492641.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus
COM1]
gi|393189651|gb|AFN04349.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus
COM1]
Length = 277
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KA LG P P+ G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGNTQVLVGIKATLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L +V+ GK+ ++ID V+ DGNL+DA+G AAL N +P
Sbjct: 114 IRESRA-----LNLEKMVIAPGKIVRVVFIDVHVLDHDGNLMDAIGIGAIAALLNARVPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V ++E EV+I EE +P+ T K+ L+V
Sbjct: 169 V-----LYNEETGEVEIL-EEKEPLPVEKIPIPVTFAKIGNYLVV 207
>gi|156363851|ref|XP_001626253.1| predicted protein [Nematostella vectensis]
gi|156213123|gb|EDO34153.1| predicted protein [Nematostella vectensis]
Length = 276
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ V AE P+A P+KG + VD P P+F E + LS+ + +
Sbjct: 53 LGNTTVVCGVTAEFAEPAADVPNKGFIVPNVDLPPLCSPSFRPGPPSEHAQVLSTFIDNL 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + IDL L +V+GK+ W LYID + + DGN+ DA A+ AAL NT + +
Sbjct: 113 ITNSQL-----IDLEDLCIVDGKLVWVLYIDLMCLDYDGNVADAAVIAMLAALQNTRLHT 167
Query: 121 VHV 123
V +
Sbjct: 168 VTI 170
>gi|357618708|gb|EHJ71589.1| hypothetical protein KGM_20827 [Danaus plexippus]
Length = 371
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 7/122 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++A V E+ +P ++P++G + I V+ SP A P FE +L+ L+ L+ C
Sbjct: 50 LGETKILAQVSCEVVQPKQIRPNEGILFINVEISPMAAPQFEANRQTDLTVYLNRLLEKC 109
Query: 61 LLGGKSGAGAGIDLSSL-VVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
K IDL SL +VVE KV W L +D V++ DGNL++ A A+L++ P
Sbjct: 110 YKDSKC-----IDLESLCIVVEEKV-WSLRVDIKVLNHDGNLIECASIATLASLAHFKRP 163
Query: 120 SV 121
V
Sbjct: 164 DV 165
>gi|18977939|ref|NP_579296.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus DSM
3638]
gi|29336823|sp|Q8U0M0.1|ECX2_PYRFU RecName: Full=Probable exosome complex exonuclease 2
gi|18893709|gb|AAL81691.1| hypothetical protein PF1567 [Pyrococcus furiosus DSM 3638]
Length = 277
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KA LG P P+ G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGNTQVLVGIKATLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L +V+ GK+ ++ID V+ DGNL+DA+G AAL N +P
Sbjct: 114 IRESRA-----LNLEKMVIAPGKIVRVVFIDVHVLDHDGNLMDAIGIGAIAALLNARVPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V ++E EV+I EE +P+ T K+ L+V
Sbjct: 169 V-----LYNEETGEVEIL-EEKEPLPVEKIPISVTFAKIGNYLVV 207
>gi|440803698|gb|ELR24581.1| exosome component 7, putative [Acanthamoeba castellanii str. Neff]
Length = 263
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 36/167 (21%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TDV+ V+ +L P +P++G E+L+ ++ L
Sbjct: 51 LDNTDVMVGVRVDLAEPKLDRPNEG--------------------AEDLAISITQVL--- 87
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+S A +D +SL V+ GK+ W +Y+D LV+ +GN DA+ A +AAL NT IP
Sbjct: 88 ---ARSYKNA-LDWTSLCVIPGKLVWAIYVDALVLDFEGNPYDAISIATRAALHNTMIPR 143
Query: 121 VHVAAEAASDEQPEVDISD--EEFLQFDTSGVPVITTLTKVPFPLIV 165
+ + E EV+++D ++ + D S VPV TLTK+ +V
Sbjct: 144 ITL-------EDGEVEVTDDPQDCTRLDVSNVPVTVTLTKIGTRFLV 183
>gi|449681001|ref|XP_002158932.2| PREDICTED: exosome complex component RRP43-like [Hydra
magnipapillata]
Length = 276
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 13/135 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T V+ +KAEL PS + ++G VD CS P + +S ++
Sbjct: 53 IGNTIVVCGIKAELAEPSVEKTNEGYFVPNVDLPALCSHEFRPGPPSDQAQAMSQLVAET 112
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+++C L I+L L + E K+CW +Y D + IS DGNL+DA+ A++ AL NT
Sbjct: 113 VENCKL---------INLKKLCIKEKKLCWVIYADIICISHDGNLIDAIIASLYIALLNT 163
Query: 117 GIPSVHVAAEAASDE 131
+P V + E S E
Sbjct: 164 KLPVVTINEETGSPE 178
>gi|223477853|ref|YP_002582207.1| exosome complex exonuclease RRP43 [Thermococcus sp. AM4]
gi|214033079|gb|EEB73907.1| exosome complex exonuclease RRP43 [Thermococcus sp. AM4]
Length = 273
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +K ++G P PD+G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGGTRVLVGIKVDVGEPFPDLPDRGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L LV+V GK+ ++ID V+ DGNL DA G A AAL T +P
Sbjct: 114 IRESQA-----VELEKLVIVPGKLVRVVFIDVHVLDHDGNLFDATGLAAMAALLTTRVPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V ++E E+ + +E+ +P+ T K+ +IV
Sbjct: 169 VEY-----NEETGEI-VKLDEYEPLPVRRIPLPVTFAKIGSSIIV 207
>gi|429216659|ref|YP_007174649.1| RNase PH-related exoribonuclease [Caldisphaera lagunensis DSM
15908]
gi|429133188|gb|AFZ70200.1| RNase PH-related exoribonuclease [Caldisphaera lagunensis DSM
15908]
Length = 284
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A +K E G P A PD+G + + + P A P FE +E + EL+ +
Sbjct: 58 LGNTQVLAGIKIEPGEPFADMPDEGVLQVHAELVPLASPQFEPGPPDENAIELARVIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L K+ +DL SLV+ G W L++D ++ DGNL DA A AALS +P
Sbjct: 118 LRDPKA-----VDLKSLVIRPGDKVWMLWLDLYILDYDGNLFDASMLASMAALSTARMP 171
>gi|15678709|ref|NP_275825.1| exosome complex RNA-binding protein Rrp42 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|29336572|sp|O26778.1|ECX2_METTH RecName: Full=Probable exosome complex exonuclease 2
gi|295321489|pdb|2WNR|A Chain A, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321491|pdb|2WNR|C Chain C, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321493|pdb|2WNR|E Chain E, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|2621767|gb|AAB85187.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 271
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 12/159 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T +I VK ++G P P+ G + + P A PTFE +E S ELS + C
Sbjct: 55 LGNTQIIVGVKPQIGEPFPDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRC 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + IDL L ++EG W L++D +I DGNL DA A AAL +T IP
Sbjct: 115 IRESRM-----IDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIP- 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
AA E EV I+ E+ + ++ T K+
Sbjct: 169 ------AAEVEDGEVVINREKMQPLPVNRKALMCTFAKI 201
>gi|305663899|ref|YP_003860187.1| 3' exoribonuclease [Ignisphaera aggregans DSM 17230]
gi|304378468|gb|ADM28307.1| 3' exoribonuclease [Ignisphaera aggregans DSM 17230]
Length = 286
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T ++A VK E+G+P P++G + + + P A PTFE +E + EL+ +
Sbjct: 57 LGNTQILAGVKLEVGQPFPDSPNEGILIVNAEYLPAASPTFEPGPPDENAIELARVIDRG 116
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K I L LV+V GK W +++D ++ DGNL+DA A AL+ T IP
Sbjct: 117 LREAKV-----IALDKLVIVPGKRVWIVWLDIYILDHDGNLIDASAMASMLALATTFIPY 171
Query: 121 VHV 123
V
Sbjct: 172 YEV 174
>gi|221221406|gb|ACM09364.1| Exosome complex exonuclease RRP45 [Salmo salar]
Length = 231
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++A V EL P +P++G + ++ SP A P FE EL +L+ L+ C
Sbjct: 50 LGKTRIMAQVSCELITPKENRPNEGIMFFNIELSPMASPAFEMGRQSELLVKLNRQLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGNL+DA A AAL + P
Sbjct: 110 LRNSKC-----IDTESLCVVSGEKVWQIRVDVRLLNHDGNLMDAASIAAIAALCHFRRPD 164
Query: 121 VHVAAEAAS 129
V + E +
Sbjct: 165 VGIQGEEVT 173
>gi|225708190|gb|ACO09941.1| Exosome complex exonuclease RRP45 [Osmerus mordax]
Length = 398
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P +P G + V+ SP A P FE EL +L+ L+ C
Sbjct: 50 LGKTRVMTQVSCELVVPKDNRPSDGIMFFNVELSPMASPGFEVGRQSELLVKLNRQLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K D SL VV G+ W + +D V++ DGNL+DA A ALS+ P
Sbjct: 110 LRNSKC-----FDTESLCVVSGEKVWQIRVDVHVLNHDGNLMDAASVAAITALSHFRRPD 164
Query: 121 VHVAAEAAS 129
V + E +
Sbjct: 165 VGIHGEEVT 173
>gi|118601810|ref|NP_001073074.1| exosome complex component RRP43 [Bos taurus]
gi|122135904|sp|Q2KHU3.1|EXOS8_BOVIN RecName: Full=Exosome complex component RRP43; AltName:
Full=Exosome component 8; AltName: Full=Ribosomal
RNA-processing protein 43
gi|86826533|gb|AAI12882.1| Exosome component 8 [Bos taurus]
gi|296481825|tpg|DAA23940.1| TPA: exosome complex exonuclease RRP43 [Bos taurus]
Length = 276
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 75/157 (47%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE G P PDKG V VD SP F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + ++ DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + L T PV T+
Sbjct: 167 EVTINEETA---LAEVNLKKKSCLNIRTH--PVATSF 198
>gi|307180205|gb|EFN68238.1| Exosome complex exonuclease RRP45 [Camponotus floridanus]
Length = 387
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T IA V ++ +P +P++G + I V+ +P A FE E + +S L+ C
Sbjct: 50 LGHTKAIAQVSCDIRQPKTFRPNEGTIYINVELAPLAAQHFESGRQSEAAILISRQLEKC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K +DL SL +V K W L ID +I+ DGNL+D A+ AAL + P
Sbjct: 110 FKDSKC-----VDLESLCIVADKKVWSLRIDINIINHDGNLIDCASIAVLAALMHFHRPD 164
Query: 121 V 121
V
Sbjct: 165 V 165
>gi|383856603|ref|XP_003703797.1| PREDICTED: exosome complex component RRP43-like [Megachile
rotundata]
Length = 278
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+ +KAEL P P+ G + V+ SP P F + + +S+ + +
Sbjct: 53 IGSTTVVCGIKAELTTPRTESPEYGYIVPNVELSPLCSPKFRPGPPSDQAQIISNLINNI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ A IDL L + +GK+ W LY D L I+ DG+++DA A+ AAL+ +P
Sbjct: 113 LINS-----AAIDLKDLCICKGKLAWVLYCDLLCINYDGSVIDACVGALTAALNTLTLPE 167
Query: 121 V 121
V
Sbjct: 168 V 168
>gi|170290982|ref|YP_001737798.1| exosome complex RNA-binding protein Rrp42 [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175062|gb|ACB08115.1| 3' exoribonuclease [Candidatus Korarchaeum cryptofilum OPF8]
Length = 268
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 12/159 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VKA+LG P PDKG + P A PTFE +E + EL+ +
Sbjct: 55 LGETQVLVGVKADLGEPFPDTPDKGVFVSNAELLPVASPTFEPGPPDEGAIELARVVDRA 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + IDL SLV++ GK+ + +++D V+ DGNL D+L A AL + IP
Sbjct: 115 I-----RSADAIDLGSLVILPGKLVYMIFLDMYVLDYDGNLEDSLTLASLIALGRSEIPE 169
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
V + E E+++ E + + +P+ + K+
Sbjct: 170 VELK------ENGEIEVK-ESKRKLELKDIPINFSFVKI 201
>gi|119628986|gb|EAX08581.1| exosome component 8, isoform CRA_c [Homo sapiens]
Length = 275
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE PS PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSF 198
>gi|348583439|ref|XP_003477480.1| PREDICTED: exosome complex component RRP43-like [Cavia porcellus]
Length = 276
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P A PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFAVPPADAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISSGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 167 EVRINEETA---LAEVNLKKKSYLNIRTH--PVATSF 198
>gi|332027278|gb|EGI67362.1| Exosome complex exonuclease RRP45 [Acromyrmex echinatior]
Length = 390
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T +A V ++ +P A +P++G + I V+ +P A FEG E + ++ L+ C
Sbjct: 50 LGHTKAVAQVSCDIQQPKASRPNEGMIRINVELAPLAAQHFEGGRQSEAAILINRQLEKC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K +DL SL +V K W+L ID +I+ DGNL+D A AAL + P
Sbjct: 110 FKDSKC-----VDLESLCIVADKKVWNLRIDINIINHDGNLVDCASIATLAALMHFHRPD 164
Query: 121 V 121
V
Sbjct: 165 V 165
>gi|380025250|ref|XP_003696390.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP45-like [Apis florea]
Length = 411
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA V ++ +P +P++G + I V+ +P A F+ E+S +S L+ C
Sbjct: 50 LGQTRVIAQVTCDIQQPKTSRPNEGMLHINVELNPMAAQHFDSGRQSEISILISRQLEKC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K IDL SL ++ K W+L +D VI+ D NL+D A AALS+ P
Sbjct: 110 YQDSKC-----IDLESLCIIADKKVWNLRVDINVINHDXNLIDCASIATLAALSHFHRPD 164
Query: 121 V 121
V
Sbjct: 165 V 165
>gi|409096212|ref|ZP_11216236.1| exosome complex RNA-binding protein Rrp42 [Thermococcus zilligii
AN1]
Length = 276
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK E G P P++G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGDTMVLVGVKVEFGEPFPDLPERGVMTTNVELVPLASPTFEPGPPDERAVELARIVDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A IDL LV+V GK+ + L+ID V+ DGNL+DA G A AAL T IP
Sbjct: 114 I--RESNA---IDLDKLVIVPGKLVYVLFIDVHVLDHDGNLIDAAGLAAMAALMTTKIPR 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V AE I E + VPV T K+ L+V
Sbjct: 169 VQYNAETGE------LIKLNELEPLPVNHVPVPVTFAKIGSSLVV 207
>gi|31415882|ref|NP_852480.1| exosome complex component RRP43 [Homo sapiens]
gi|21759409|sp|Q96B26.1|EXOS8_HUMAN RecName: Full=Exosome complex component RRP43; AltName:
Full=Exosome component 8; AltName: Full=Opa-interacting
protein 2; Short=OIP-2; AltName: Full=Ribosomal
RNA-processing protein 43; AltName: Full=p9
gi|18088472|gb|AAH20773.1| Exosome component 8 [Homo sapiens]
gi|123992916|gb|ABM84060.1| exosome component 8 [synthetic construct]
gi|123999809|gb|ABM87413.1| exosome component 8 [synthetic construct]
gi|208966244|dbj|BAG73136.1| exosome component 8 [synthetic construct]
Length = 276
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE PS PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSF 198
>gi|318083345|ref|NP_001187695.1| exosome complex exonuclease rrp43 [Ictalurus punctatus]
gi|308323723|gb|ADO28997.1| exosome complex exonuclease rrp43 [Ictalurus punctatus]
Length = 277
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 10/151 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+ VI +KAEL P+A PDKG + VD P F G GE+ A+++S
Sbjct: 53 IGNATVICGIKAELATPTADAPDKGYIVPNVDLPPLCSSRFRPGPPGEQ--AQVASQFIA 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
++ + I L + + K+CW LY D + + DGNL DA + AAL N +P
Sbjct: 111 DIIDDSNI----IKKEDLCIGKSKLCWVLYCDIMCLDYDGNLPDACIITLLAALKNAQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGV 150
V + E + PEVD+ + LQ + V
Sbjct: 167 KVTINKET---DLPEVDVQHKRHLQINKHPV 194
>gi|122920909|pdb|2NN6|C Chain C, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 278
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE PS PDKG V VD P F G GEE A+++S
Sbjct: 55 LGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 111 --IADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 168
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 169 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSF 200
>gi|374633081|ref|ZP_09705448.1| RNase PH-related exoribonuclease [Metallosphaera yellowstonensis
MK1]
gi|373524565|gb|EHP69442.1| RNase PH-related exoribonuclease [Metallosphaera yellowstonensis
MK1]
Length = 281
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK E P P +G + + + P A TFE +E + ELS +
Sbjct: 58 LGDTTVLAGVKIEEDEPYPDTPAQGNLVVNAELLPLAYETFEPGPPDENAIELSRVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L KS IDLSSLV+ EGK W +++D V+ GN+LDA A AAL +T +P
Sbjct: 118 LRDSKS-----IDLSSLVIEEGKRVWTVWVDISVLDYGGNVLDACTLAAVAALYDTKLPK 172
Query: 121 V 121
V
Sbjct: 173 V 173
>gi|322799219|gb|EFZ20634.1| hypothetical protein SINV_00940 [Solenopsis invicta]
Length = 384
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V ++ +P A +P++G + I V+ +P A FE E + +S L+ C
Sbjct: 50 LGHTRVVTQVSCDIQQPKASRPNEGTIRINVELAPLAAQHFESGRPSEAAILISRQLEKC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K +DL SL +V K W+L ID VI+ DGNL+D A AAL + P
Sbjct: 110 FKDSKC-----VDLESLCIVADKKVWNLRIDVNVINHDGNLIDCASVATLAALIHFHRPD 164
Query: 121 V 121
V
Sbjct: 165 V 165
>gi|91080613|ref|XP_974147.1| PREDICTED: similar to AGAP002348-PA [Tribolium castaneum]
gi|270005510|gb|EFA01958.1| hypothetical protein TcasGA2_TC007574 [Tribolium castaneum]
Length = 389
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 27/167 (16%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A E+ +P + +P +G + I ++ +P A P FE ELS +L+ L+ C
Sbjct: 53 LGNTKVLAQTSCEIQQPKSSRPSEGILNINIELNPLAAPHFEAGRQSELSVQLNRLLEKC 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K+ +DL SL + + W L +D V++ +GN+LD A+ A+L++
Sbjct: 113 VKDSKA-----VDLESLCIKTNEKVWALKVDINVLNHEGNILDCASIAMLASLTHF---- 163
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHN 167
+P+V EEF+ + + + P P ++H+
Sbjct: 164 ----------RRPDVTCDGEEFI--------IHSYQQRDPIPTVIHH 192
>gi|2815604|gb|AAC39558.1| Opa-interacting protein OIP2 [Homo sapiens]
Length = 265
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE PS PDKG V VD P F G GEE A+++S
Sbjct: 51 LGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 106
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 107 --IADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 165 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSF 196
>gi|149730159|ref|XP_001495596.1| PREDICTED: exosome complex component RRP43-like [Equus caballus]
Length = 276
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V ++ E A EV++ + FL T PV T+
Sbjct: 167 EVTISEETA---LAEVNLKKKSFLNIRTH--PVATSF 198
>gi|54400656|ref|NP_001006077.1| exosome complex exonuclease RRP45 [Danio rerio]
gi|53734430|gb|AAH83243.1| Exosome component 9 [Danio rerio]
gi|182889156|gb|AAI64713.1| Exosc9 protein [Danio rerio]
Length = 393
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V++ V EL P +P +G V ++ SP A P FE EL L+ L+ C
Sbjct: 50 LGKTRVLSQVSCELVPPKDSRPTEGIVFFNLELSPMASPAFEPNRQSELLVTLNRQLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D V++ DGNL+DA A +ALS+ P
Sbjct: 110 LRNSKC-----IDTESLCVVSGEKVWQIRVDVHVLNHDGNLMDAASIAAISALSHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V + + PE
Sbjct: 165 VAIQGRDVTVFGPE 178
>gi|325969193|ref|YP_004245385.1| 3' exoribonuclease [Vulcanisaeta moutnovskia 768-28]
gi|323708396|gb|ADY01883.1| 3' exoribonuclease [Vulcanisaeta moutnovskia 768-28]
Length = 283
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A VK E+G+P PD+G + + ++ +P A P E +E + E++ +
Sbjct: 58 LGNTKVMAGVKVEVGKPFEDTPDEGALIVNLEIAPAASPDIEPGPPDENAIEIARVVDRA 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ SG ++ SL +V G+ W L++D V++ DGNL+DA A AL NT +P
Sbjct: 118 I--RHSGF---LNFKSLSIVTGRHAWFLWVDIYVLNHDGNLVDASTIAAITALMNTALPK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V + + +D S++ L + +P+ T K+ L+V
Sbjct: 173 VEL---DPAGNILRIDRSNKSPLALNVDKLPLTITHAKLGNFLLV 214
>gi|288869793|ref|ZP_06409499.1| putative exosome complex exonuclease 2 [Methanobrevibacter smithii
DSM 2374]
gi|288860271|gb|EFC92569.1| putative exosome complex exonuclease 2 [Methanobrevibacter smithii
DSM 2374]
Length = 265
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 70/138 (50%), Gaps = 6/138 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI +K ++G P PD G + + P A+PTFE E S EL+ +
Sbjct: 55 IGDTQVIVGIKPQIGAPFPDTPDLGVLMTNCEMLPMADPTFEPGPPSEDSIELARVVDRG 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +DL L V EGK W L+ID +I + GNL DA A+ AAL +T +PS
Sbjct: 115 IRESEL-----VDLDKLCVEEGKHVWMLFIDLHIIDNCGNLFDACELAVMAALKSTKLPS 169
Query: 121 VHVA-AEAASDEQPEVDI 137
+A E D + +D+
Sbjct: 170 ASIADDEVVLDHENTIDL 187
>gi|312137049|ref|YP_004004386.1| ribosomal RNA-processing protein rrp42 [Methanothermus fervidus DSM
2088]
gi|311224768|gb|ADP77624.1| ribosomal RNA-processing protein RRP42 [Methanothermus fervidus DSM
2088]
Length = 270
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 74/161 (45%), Gaps = 16/161 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK +G P P+ G + + P A PTFE +E S EL+ + C
Sbjct: 56 LGDTQVLVGVKPTIGEPFPDNPNLGIIITNSELLPMASPTFEPGPPDERSIELARVVDRC 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDA--LGAAIKAALSNTGI 118
+ +DL L ++EG+ W L+ID ++ DGNL DA LGA AAL +T +
Sbjct: 116 I-----RESNMLDLEKLCIIEGEKVWILFIDLHILDYDGNLFDASVLGAV--AALMDTKL 168
Query: 119 PSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
P V + E EV I D D + T K+
Sbjct: 169 PKVSI-------EDDEVVIDDSSVELLDIKDKVAMCTFAKI 202
>gi|304314829|ref|YP_003849976.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302588288|gb|ADL58663.1| predicted exosome RNA binding protein [Methanothermobacter
marburgensis str. Marburg]
Length = 267
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T +I VK ++G P P+ G + + P A PTFE +E S ELS + C
Sbjct: 51 LGNTQIIVGVKPQIGEPFPDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + IDL L ++EG W L++D +I DGNL DA A AAL +T IP+
Sbjct: 111 VRESQM-----IDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPA 165
Query: 121 VHV 123
V
Sbjct: 166 AEV 168
>gi|291408704|ref|XP_002720651.1| PREDICTED: exosome component 8 [Oryctolagus cuniculus]
Length = 276
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P A PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFAAPPADAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSRIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSF 198
>gi|222444528|ref|ZP_03607043.1| hypothetical protein METSMIALI_00140 [Methanobrevibacter smithii
DSM 2375]
gi|222434093|gb|EEE41258.1| 3' exoribonuclease family, domain 1 [Methanobrevibacter smithii DSM
2375]
Length = 265
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 70/138 (50%), Gaps = 6/138 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI +K ++G P PD G + + P A+PTFE E S EL+ +
Sbjct: 55 IGDTQVIVGIKPQIGAPFPDTPDLGVLMTNCEMLPMADPTFEPGPPSEDSIELARVVDRG 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +DL L V EGK W L+ID +I + GNL DA A+ AAL +T +PS
Sbjct: 115 IRESEL-----VDLDKLCVEEGKHVWMLFIDLHIIDNCGNLFDACELAVMAALKSTKLPS 169
Query: 121 VHVA-AEAASDEQPEVDI 137
+A E D + +D+
Sbjct: 170 ASIADDEVVLDHENTIDL 187
>gi|332796516|ref|YP_004458016.1| 3' exoribonuclease [Acidianus hospitalis W1]
gi|332694251|gb|AEE93718.1| 3' exoribonuclease [Acidianus hospitalis W1]
Length = 276
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK E P P++G + + V+ P A TFE +E + ELS +
Sbjct: 58 LGDTTVLAGVKVEPEEPFEDTPNQGNLVVNVELLPLAYETFEPGPPDENAIELSRVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L KS IDLS LV+ GK W +++D V+ GN+LDA A +AL +T +P
Sbjct: 118 LRDSKS-----IDLSKLVIEPGKKIWTVWVDIYVLDYGGNILDACTLAAVSALYDTRLPK 172
Query: 121 V 121
V
Sbjct: 173 V 173
>gi|326498189|dbj|BAJ94957.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 26/169 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V A+L +P +P++G +AIF + SP A+P FE GR GE + EL +
Sbjct: 52 LGETRVMGYVTAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGE-AAIELGRVIDR 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL VV GK W + +D ++ ++GNL+DA A AALS P
Sbjct: 111 GLRESRA-----VDMESLCVVAGKHVWSVRVDLHILDNEGNLIDAANIAALAALSTFRRP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V D+ +V + D E + P PL +H+L
Sbjct: 166 ECTVGG----DDGQQVTVHDSE---------------VRDPLPLTIHHL 195
>gi|326493068|dbj|BAJ84995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 337
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 26/169 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V A+L +P +P++G +AIF + SP A+P FE GR GE + EL +
Sbjct: 52 LGETRVMGYVTAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGE-AAIELGRVIDR 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL VV GK W + +D ++ ++GNL+DA A AALS P
Sbjct: 111 GLRESRA-----VDMESLCVVAGKHVWSVRVDLHILDNEGNLIDAANIAALAALSTFRRP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V D+ +V + D E + P PL +H+L
Sbjct: 166 ECTVGG----DDGQQVTVHDSE---------------VRDPLPLTIHHL 195
>gi|148642301|ref|YP_001272814.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
smithii ATCC 35061]
gi|148551318|gb|ABQ86446.1| ribonuclease PH-related protein [Methanobrevibacter smithii ATCC
35061]
Length = 262
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 70/138 (50%), Gaps = 6/138 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI +K ++G P PD G + + P A+PTFE E S EL+ +
Sbjct: 52 IGDTQVIVGIKPQIGAPFPDTPDLGVLMTNCEMLPMADPTFEPGPPSEDSIELARVVDRG 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +DL L V EGK W L+ID +I + GNL DA A+ AAL +T +PS
Sbjct: 112 IRESEL-----VDLDKLCVEEGKHVWMLFIDLHIIDNCGNLFDACELAVMAALKSTKLPS 166
Query: 121 VHVA-AEAASDEQPEVDI 137
+A E D + +D+
Sbjct: 167 ASIADDEVVLDHENTIDL 184
>gi|115947457|ref|XP_794197.2| PREDICTED: exosome complex component RRP42-like, partial
[Strongylocentrotus purpuratus]
Length = 209
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 52/88 (59%)
Query: 72 IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDE 131
+D SL V+ G+ W LY D +V+ GNLLDA+ A+KAAL NT IP V V + E
Sbjct: 40 LDYKSLCVIAGQCVWTLYADIVVLECGGNLLDAIALAVKAALYNTRIPLVTVHKDMDGTE 99
Query: 132 QPEVDISDEEFLQFDTSGVPVITTLTKV 159
+V + +F+ DT +PV+ T+T V
Sbjct: 100 DIDVSSNPHDFVTLDTKNLPVLVTVTMV 127
>gi|119628984|gb|EAX08579.1| exosome component 8, isoform CRA_a [Homo sapiens]
Length = 316
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE PS PDKG V VD P F G GEE A+++S
Sbjct: 94 LGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 149
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 150 --IADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 207
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 208 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSF 239
>gi|392576624|gb|EIW69754.1| hypothetical protein TREMEDRAFT_23063, partial [Tremella
mesenterica DSM 1558]
Length = 236
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 63/123 (51%), Gaps = 14/123 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAI-FVD----CSPTAEPTFEGRGGEELSAELSS 55
+GST V+ +KAE+ P+ PDKG + + VD CSP +P + LS L
Sbjct: 58 LGSTTVVCGIKAEIAEPTTSSPDKGYLIVPNVDLPALCSPRYKPGPPSDEAQVLSVWLYD 117
Query: 56 ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
L + +DLSSL +V GK W LYID + I+ DGN DA A+ AAL N
Sbjct: 118 LLI---------SSHVVDLSSLCIVPGKAVWALYIDVVCINYDGNAFDATVLAVMAALRN 168
Query: 116 TGI 118
T +
Sbjct: 169 TKL 171
>gi|148703331|gb|EDL35278.1| exosome component 8, isoform CRA_f [Mus musculus]
Length = 283
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PD+G V VD P F G GEE A+++S
Sbjct: 60 LGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQF-- 115
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 116 --IADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 173
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T+ PV T+
Sbjct: 174 EVTINEETA---LAEVNLKKKSYLNVRTN--PVATSF 205
>gi|356539154|ref|XP_003538065.1| PREDICTED: exosome complex component rrp45-like [Glycine max]
Length = 438
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 24/168 (14%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V A+L RP +P++G ++IF + SP A+P+F+ + + EL +
Sbjct: 55 LGQTHVMTFVTAQLVRPYRDRPNEGSLSIFTEFSPMADPSFDPGRPSDAAVELGRVVDRG 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ ID SL V+ GK+ W + +D ++ + GNL+DA A A+L P
Sbjct: 115 LRESRA-----IDTESLCVLSGKLVWAIRVDIHILDNAGNLVDAANIAALASLLTFRRPE 169
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
+A E D V V + P PLI+H+L
Sbjct: 170 CSLAGEDGQD-------------------VVVHPPEERDPIPLIIHHL 198
>gi|355754637|gb|EHH58538.1| Exosome complex exonuclease RRP43, partial [Macaca fascicularis]
Length = 272
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PDKG V VD P F G GEE A+++S
Sbjct: 49 LGNTTVICGVKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 104
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 105 --IADVIENSQIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 162
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 163 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSF 194
>gi|45595709|gb|AAH67250.1| Exosc8 protein, partial [Mus musculus]
Length = 270
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PD+G V VD P F G GEE A+++S
Sbjct: 47 LGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQF-- 102
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 103 --IADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 160
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T+ PV T+
Sbjct: 161 EVTINEETA---LAEVNLKKKSYLNVRTN--PVATSF 192
>gi|357447261|ref|XP_003593906.1| Exosome complex exonuclease RRP45 [Medicago truncatula]
gi|355482954|gb|AES64157.1| Exosome complex exonuclease RRP45 [Medicago truncatula]
Length = 449
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 26/169 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V++ V A+L +P +P++G ++IF + SP A+P+FE GR GE + EL +
Sbjct: 55 LGETRVMSFVSAQLVQPYKDRPNEGTLSIFTEFSPMADPSFEPGRPGES-AVELGRIIDR 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ ID SL ++ K+ W + ID ++ + GNL+DA A A+L P
Sbjct: 114 GLRESRA-----IDTESLCILSAKLVWAIRIDIHILDNAGNLVDAANIAALASLKTFRRP 168
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
+ E D V V + P PLI+H+L
Sbjct: 169 ECSLGGE-------------------DGQQVVVHPPEVREPLPLIIHHL 198
>gi|356497351|ref|XP_003517524.1| PREDICTED: exosome complex component rrp45-like [Glycine max]
Length = 350
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 24/168 (14%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI V A+L RP +P++G ++IF + SP A+P+FE + + EL +
Sbjct: 55 LGQTHVITFVTAQLVRPYRDRPNEGSLSIFTEFSPMADPSFEPGRPTDAAVELGRVVDRG 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ ID SL V+ GK+ W + +D ++ + GNL+DA A +L
Sbjct: 115 LRESRA-----IDTESLCVLSGKLVWAIRVDIHILDNAGNLVDAANIAALVSL------- 162
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
+ +PE ++ E D V V + P PLI+H+L
Sbjct: 163 -------LTFRRPECSLTGE-----DGQDVVVHPPEERDPIPLIIHHL 198
>gi|355700935|gb|EHH28956.1| Exosome complex exonuclease RRP43, partial [Macaca mulatta]
Length = 272
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PDKG V VD P F G GEE A+++S
Sbjct: 49 LGNTTVICGVKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRAGPPGEE--AQVASQF-- 104
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 105 --IADVIENSQIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 162
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 163 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSF 194
>gi|296203741|ref|XP_002749024.1| PREDICTED: uncharacterized protein LOC100407072 [Callithrix
jacchus]
Length = 276
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 167 EVTINGETA---LAEVNLKKKSYLNIRTH--PVATSF 198
>gi|254692991|ref|NP_081424.3| exosome complex component RRP43 isoform 2 [Mus musculus]
gi|21759414|sp|Q9D753.1|EXOS8_MOUSE RecName: Full=Exosome complex component RRP43; AltName:
Full=Exosome component 8; AltName: Full=Ribosomal
RNA-processing protein 43
gi|22208743|emb|CAD43467.1| CBP-interacting protein 3 [Mus musculus]
gi|148703329|gb|EDL35276.1| exosome component 8, isoform CRA_d [Mus musculus]
Length = 276
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PD+G V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T+ PV T+
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNVRTN--PVATSF 198
>gi|60359866|dbj|BAD90152.1| mKIAA4013 protein [Mus musculus]
Length = 308
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PD+G V VD P F G GEE A+++S
Sbjct: 85 LGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQF-- 140
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 141 --IADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 198
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T+ PV T+
Sbjct: 199 EVTINEETA---LAEVNLKKKSYLNVRTN--PVATSF 230
>gi|386782149|ref|NP_001247467.1| exosome component 8 [Macaca mulatta]
gi|402901796|ref|XP_003913826.1| PREDICTED: exosome complex component RRP43 [Papio anubis]
gi|384945128|gb|AFI36169.1| exosome complex component RRP43 [Macaca mulatta]
Length = 276
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSF 198
>gi|328773489|gb|EGF83526.1| hypothetical protein BATDEDRAFT_9008 [Batrachochytrium
dendrobatidis JAM81]
Length = 285
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 5/128 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI ++KAEL P+ P +G + VD F EL+ +S+ L +
Sbjct: 69 VGDTSVICAIKAELAEPAPTLPYQGYLVPNVDLPALCASHFRPGPPCELAQSISTFLNNI 128
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +G +DL SL VV GKV W LY D + ++ GN+ DA A+ AAL N +P
Sbjct: 129 I-----SSGNVLDLESLCVVPGKVVWVLYADIVCLNYAGNIFDASVDALIAALCNVKLPE 183
Query: 121 VHVAAEAA 128
V ++ E+A
Sbjct: 184 VTISDESA 191
>gi|74146647|dbj|BAE41329.1| unnamed protein product [Mus musculus]
Length = 257
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PD+G V VD P F G GEE A+++S
Sbjct: 34 LGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQF-- 89
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 90 --IADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 147
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T+ PV T+
Sbjct: 148 EVTINEETA---LAEVNLKKKSYLNVRTN--PVATSF 179
>gi|50546251|ref|XP_500645.1| YALI0B08514p [Yarrowia lipolytica]
gi|49646511|emb|CAG82887.1| YALI0B08514p [Yarrowia lipolytica CLIB122]
Length = 299
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+ + AE+ +P+ +P +G + D A P FE E +S ++
Sbjct: 46 MGKTKVVVRISAEITKPNERRPFEGIFVVHTDIGSMASPIFENNHQSEQEIMISQVVEKA 105
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +DL SL +V GK CW++ D + DG L+DA AA+ A L + P
Sbjct: 106 V--RRSGA---LDLESLCIVAGKKCWEIRADVHYLDFDGGLVDATCAAVMAGLYHFKKPD 160
Query: 121 VHV 123
V V
Sbjct: 161 VDV 163
>gi|298674552|ref|YP_003726302.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303]
gi|298287540|gb|ADI73506.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303]
Length = 260
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G T +I VK ++G P PDKG + ++ +P A P FE +E + E++ + +
Sbjct: 54 GDTQLIVGVKLQVGEPFPDTPDKGIIITSLELNPIASPDFEAGPPKEDAIEIARVVDRGI 113
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+SGA IDL+ L + EG+ W ++ID V++ DGN++DA AAL T IP+
Sbjct: 114 R--ESGA---IDLNKLCITEGEEVWTVFIDVNVLNDDGNIMDAASIGAIAALMTTNIPA 167
>gi|347524282|ref|YP_004781852.1| 3' exoribonuclease [Pyrolobus fumarii 1A]
gi|343461164|gb|AEM39600.1| 3' exoribonuclease [Pyrolobus fumarii 1A]
Length = 327
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 5/132 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A VK ++ +P PD+ + + + P A P FE +E + EL+ +
Sbjct: 58 LGNTMVLAGVKMDITQPFPDTPDEAVLVVHAEFVPLASPVFEPGPPDENAIELARVVDRA 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ A L LV+ GK W +Y+D V++ DGNLLDA A AAL T +P+
Sbjct: 118 LREIRAVA-----LDRLVLEPGKAVWRIYVDIYVLNHDGNLLDASMLASMAALMATRVPA 172
Query: 121 VHVAAEAASDEQ 132
V E + E+
Sbjct: 173 VRRTGEGFAIER 184
>gi|114649397|ref|XP_522661.2| PREDICTED: exosome complex component RRP43 isoform 4 [Pan
troglodytes]
gi|397513274|ref|XP_003826944.1| PREDICTED: exosome complex component RRP43 [Pan paniscus]
Length = 276
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSF 198
>gi|403286361|ref|XP_003934463.1| PREDICTED: exosome complex component RRP43 [Saimiri boliviensis
boliviensis]
Length = 276
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAVPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSF 198
>gi|443692453|gb|ELT94047.1| hypothetical protein CAPTEDRAFT_173435 [Capitella teleta]
Length = 277
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T ++ +KAE+ + P++G V V P + P F R +L+ + ++
Sbjct: 53 LGNTCILCGIKAEMVASNPETPEQGIVDSSVSLLPMSTPQFRDRPPVDLAPSCTHFIEQL 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L +DL L + +GK W+L+ D + + DGN+LDA A+ AAL NT +P
Sbjct: 113 L-----TCSGCLDLKDLCIEKGKHAWNLHCDLMCLDYDGNVLDACCLALIAALKNTVLPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E+ + V + +E + VPV TTL
Sbjct: 168 VTIDEESGT-----VKLDAKEKHPLSVNAVPVSTTL 198
>gi|357149443|ref|XP_003575114.1| PREDICTED: exosome complex component RRP45-like isoform 1
[Brachypodium distachyon]
Length = 336
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 81/169 (47%), Gaps = 26/169 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V A+L +P +P +G +AIF + SP A+P FE GR GE + EL +
Sbjct: 52 LGETRVMGYVTAQLVQPYKDRPSEGTLAIFTEFSPMADPAFEPGRPGE-AAIELGRVIDR 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL VV GK W L +D ++ + GNL+DA A AALS P
Sbjct: 111 GLRESRA-----VDMESLCVVAGKHVWSLRVDLHILDNGGNLIDAANIAALAALSTFRRP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V E +V + D E + P PL +H+L
Sbjct: 166 ECTVGGEDGQ----QVTVHDPE---------------VRDPLPLTIHHL 195
>gi|413937198|gb|AFW71749.1| hypothetical protein ZEAMMB73_342555 [Zea mays]
Length = 337
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 26/169 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V +L +P +P++G +AIF + SP A+P+FE GR G EL+ EL +
Sbjct: 52 LGETHVMGYVTVQLVQPYRDRPNEGTLAIFTEFSPMADPSFEPGRPG-ELAIELGRVIDR 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL VV GK W + +D ++ + GNL+DA A AALS P
Sbjct: 111 GLRESRA-----VDMESLCVVAGKHVWSVRVDLHILDNGGNLIDAANIAALAALSTFRRP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V D+ +V + D E + P PL +H++
Sbjct: 166 ECTVGG----DDGQQVTVHDPE---------------VRDPLPLTIHHM 195
>gi|289740851|gb|ADD19173.1| exosomal 3'-5' exoribonuclease complex subunit Rrp45 [Glossina
morsitans morsitans]
Length = 404
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 27/167 (16%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V +ELG P A +P++G + I V+ P A FE EL+ +++ L+
Sbjct: 50 LGETKVLGQVSSELGEPKATRPNEGILHINVELGPMAAAHFEAGRNCELTVQINRTLERT 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
++ IDL SL V+ + W L +D V++ +GNL+D A AL++ P
Sbjct: 110 FKDSRA-----IDLESLCVISEERVWMLRVDLNVLNHEGNLIDCCSVATLCALAHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHN 167
V V I DE + + T+ K P +++H+
Sbjct: 165 VSV-------------IEDE---------IRIHTSAEKEPLKMVMHH 189
>gi|37589850|gb|AAH59089.1| Exosome component 8 [Mus musculus]
Length = 276
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 71/151 (47%), Gaps = 10/151 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PD+G V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGV 150
V + E A EV++ + +L T+ V
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNVRTNPV 194
>gi|413937194|gb|AFW71745.1| hypothetical protein ZEAMMB73_342555 [Zea mays]
Length = 363
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 26/169 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V +L +P +P++G +AIF + SP A+P+FE GR G EL+ EL +
Sbjct: 52 LGETHVMGYVTVQLVQPYRDRPNEGTLAIFTEFSPMADPSFEPGRPG-ELAIELGRVIDR 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL VV GK W + +D ++ + GNL+DA A AALS P
Sbjct: 111 GLRESRA-----VDMESLCVVAGKHVWSVRVDLHILDNGGNLIDAANIAALAALSTFRRP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V D+ +V + D E + P PL +H++
Sbjct: 166 ECTVGG----DDGQQVTVHDPE---------------VRDPLPLTIHHM 195
>gi|307214871|gb|EFN89739.1| Exosome complex exonuclease RRP45 [Harpegnathos saltator]
Length = 390
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T IA V ++ +P +P++G + I V+ S A FE E + +S L+ C
Sbjct: 50 LGHTKAIAQVSCDIQQPKISRPNEGMIHINVELSQLAAQNFESGRQSEAAVMISRQLEKC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K +DL SL +V K W++ +D +I+ DGNL+D A AALS+ P
Sbjct: 110 FKDSKC-----VDLESLCIVADKKVWNIRVDINIINHDGNLIDCASIATLAALSHFHRPD 164
Query: 121 V 121
V
Sbjct: 165 V 165
>gi|332242319|ref|XP_003270334.1| PREDICTED: exosome complex component RRP43 [Nomascus leucogenys]
Length = 276
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PDKG + VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPTDAPDKGYIVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSF 198
>gi|354499904|ref|XP_003512044.1| PREDICTED: exosome complex component RRP43-like, partial
[Cricetulus griseus]
Length = 284
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 75/157 (47%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P PD+G V VD P F G GEE A+++S
Sbjct: 61 LGNTTVICGIKAEFAAPPLDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQFIA 118
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+L I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 119 DVLENSQI----IKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 174
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T+ PV T+
Sbjct: 175 EVTINEETA---LAEVNLKKKSYLNVRTN--PVATSF 206
>gi|444726907|gb|ELW67422.1| Exosome complex component RRP43 [Tupaia chinensis]
Length = 248
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PDKG + VD P F G GEE A+++
Sbjct: 53 LGNTTVICGVKAEFAAPPTDTPDKGYIIPNVDLPPLCSSRFRSGPPGEE--AQVAGQFTA 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
++ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 111 YVIKNSQI----IQKEDLFISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSF 198
>gi|340959729|gb|EGS20910.1| hypothetical protein CTHT_0027490 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 293
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G T V+A AE+ P A +P G I + SP PTFE E LS L+
Sbjct: 51 FGKTRVLAKASAEVTVPYADRPLDGIFTIATELSPMTSPTFEVNRPTETEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ CW + +D V+S DGNL+DA A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCLVAGQKCWSIRVDVHVMSHDGNLVDAACIAVVAALRHFRKPD 165
Query: 121 VHV 123
+
Sbjct: 166 TSI 168
>gi|357149446|ref|XP_003575115.1| PREDICTED: exosome complex component RRP45-like isoform 2
[Brachypodium distachyon]
Length = 394
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 81/169 (47%), Gaps = 26/169 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V A+L +P +P +G +AIF + SP A+P FE GR GE + EL +
Sbjct: 52 LGETRVMGYVTAQLVQPYKDRPSEGTLAIFTEFSPMADPAFEPGRPGE-AAIELGRVIDR 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL VV GK W L +D ++ + GNL+DA A AALS P
Sbjct: 111 GLRESRA-----VDMESLCVVAGKHVWSLRVDLHILDNGGNLIDAANIAALAALSTFRRP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V E +V + D E + P PL +H+L
Sbjct: 166 ECTVGGEDGQ----QVTVHDPEV---------------RDPLPLTIHHL 195
>gi|426375219|ref|XP_004054442.1| PREDICTED: exosome complex component RRP43 [Gorilla gorilla
gorilla]
Length = 276
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 167 EVIINEETA---LAEVNLKKKSYLNIRTH--PVATSF 198
>gi|413937195|gb|AFW71746.1| hypothetical protein ZEAMMB73_342555 [Zea mays]
gi|413937196|gb|AFW71747.1| hypothetical protein ZEAMMB73_342555 [Zea mays]
Length = 446
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 26/169 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V +L +P +P++G +AIF + SP A+P+FE GR G EL+ EL +
Sbjct: 52 LGETHVMGYVTVQLVQPYRDRPNEGTLAIFTEFSPMADPSFEPGRPG-ELAIELGRVIDR 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL VV GK W + +D ++ + GNL+DA A AALS P
Sbjct: 111 GLRESRA-----VDMESLCVVAGKHVWSVRVDLHILDNGGNLIDAANIAALAALSTFRRP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V D+ +V + D E + P PL +H++
Sbjct: 166 ECTVGG----DDGQQVTVHDPEV---------------RDPLPLTIHHM 195
>gi|293335353|ref|NP_001170333.1| uncharacterized protein LOC100384304 [Zea mays]
gi|224030955|gb|ACN34553.1| unknown [Zea mays]
gi|224035157|gb|ACN36654.1| unknown [Zea mays]
gi|413937197|gb|AFW71748.1| hypothetical protein ZEAMMB73_342555 [Zea mays]
Length = 393
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 26/169 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V +L +P +P++G +AIF + SP A+P+FE GR G EL+ EL +
Sbjct: 52 LGETHVMGYVTVQLVQPYRDRPNEGTLAIFTEFSPMADPSFEPGRPG-ELAIELGRVIDR 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL VV GK W + +D ++ + GNL+DA A AALS P
Sbjct: 111 GLRESRA-----VDMESLCVVAGKHVWSVRVDLHILDNGGNLIDAANIAALAALSTFRRP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V D+ +V + D E + P PL +H++
Sbjct: 166 ECTVGG----DDGQQVTVHDPE---------------VRDPLPLTIHHM 195
>gi|432328766|ref|YP_007246910.1| RNase PH-related exoribonuclease [Aciduliprofundum sp. MAR08-339]
gi|432135475|gb|AGB04744.1| RNase PH-related exoribonuclease [Aciduliprofundum sp. MAR08-339]
Length = 270
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ VK E G P P +G + + SP A PTFE G GEE + EL+ +
Sbjct: 58 LGRTKVLVGVKIEPGTPFPDTPAQGILTTNAELSPMASPTFEPGPPGEE-AIELARVVDR 116
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ G + IDL LV+ EG+ W ++ID V+ DGNL DA G AAL+ +P
Sbjct: 117 GIREGHA-----IDLEKLVIEEGEQVWVVFIDIHVLDYDGNLFDASGYGALAALTEATVP 171
Query: 120 S 120
+
Sbjct: 172 A 172
>gi|395861770|ref|XP_003803149.1| PREDICTED: exosome complex component RRP43 [Otolemur garnettii]
Length = 280
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PDKG V VD P F G GEE A+++S
Sbjct: 57 LGNTTVICGVKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 112
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 113 --IADVIENSQIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 170
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 171 EVIINEETA---LAEVNLKKKSYLNIRT--YPVATSF 202
>gi|145592135|ref|YP_001154137.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum arsenaticum
DSM 13514]
gi|145283903|gb|ABP51485.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum arsenaticum DSM
13514]
Length = 276
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 18/163 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSA---- 56
+G T VIA VK LG+P PD+G + + + P A P E +E + EL+
Sbjct: 59 LGKTHVIAGVKVGLGQPFPDAPDEGVLVVSAEVLPHASPYTEVGPPDESAIELARVVDRG 118
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++HC +D L V EG + L++D VI+ DGNL+DA A AAL NT
Sbjct: 119 IRHC---------GYVDFKKLAV-EGGKAYVLWVDLYVINDDGNLVDAANLASVAALKNT 168
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
+P+V V E+ + ++D +++ L +TS VPV ++ K+
Sbjct: 169 QLPAV-VKDESGA---VKLDRNNKSPLPLETSKVPVAVSVGKI 207
>gi|432111599|gb|ELK34704.1| Exosome complex component RRP43 [Myotis davidii]
Length = 307
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P PDKG V VD P F G GEE A+++S
Sbjct: 85 LGNTAVICGIKAEFAAPPPDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 140
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 141 --IADVIENSQIIPKEDLCISPGKLSWVLYCDLICLDYDGNILDACTCALLAALKNVQLP 198
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 199 EVTINEETA---LAEVNLKKKRYLNIRTH--PVATSF 230
>gi|325959905|ref|YP_004291371.1| 3' exoribonuclease [Methanobacterium sp. AL-21]
gi|325331337|gb|ADZ10399.1| 3' exoribonuclease [Methanobacterium sp. AL-21]
Length = 263
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 18/147 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T +I K ++G P P+ G + + P A P FE +E S ELS C
Sbjct: 52 IGNTQIIIGAKPQIGTPFGDTPNVGVLMTNTELLPMAAPNFESGPPDENSVELSRVTDRC 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ G+ +DL L +V G+ W +++D V+ DGNL+DA AAL NT +P
Sbjct: 112 IREGEV-----VDLEKLCIVPGEKVWMIFLDLHVVDYDGNLMDAAVLGSVAALMNTRLPE 166
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDT 147
+ I DE L +D
Sbjct: 167 AKI-------------IDDEVVLDYDN 180
>gi|48477465|ref|YP_023171.1| exosome complex RNA-binding protein Rrp42 [Picrophilus torridus DSM
9790]
gi|48430113|gb|AAT42978.1| ribonuclease PH [Picrophilus torridus DSM 9790]
Length = 260
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 68/127 (53%), Gaps = 7/127 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A VK E G P PD+G +A+ ++ P A PTFE G GEE + E S +
Sbjct: 56 LGRTKVVAGVKIEEGEPFPDTPDQGVMALNIEMLPMAFPTFEAGPPGEE-AIEYSRVVDR 114
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ K ID++ LV+ G W ++ID +I+ GN++DA A AAL N +P
Sbjct: 115 GIRESKM-----IDVTRLVIEPGTKVWMVFIDIDIINYAGNIIDASTIAAVAALRNAIVP 169
Query: 120 SVHVAAE 126
+ + E
Sbjct: 170 ASRIGGE 176
>gi|327274166|ref|XP_003221849.1| PREDICTED: exosome complex exonuclease RRP45-like [Anolis
carolinensis]
Length = 439
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ V EL P + +G + ++ SP A P FE EL +L+ L+ C
Sbjct: 50 LGKTRILGQVSCELVTPKPNRATEGILFFNLELSPMASPAFEPGRQPELLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D V++ +GNL+DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHVLNHNGNLIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V E + PE
Sbjct: 165 VSVQGEEVTLYTPE 178
>gi|313230944|emb|CBY18942.1| unnamed protein product [Oikopleura dioica]
Length = 441
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T +A V L RPS ++P +GK+ V+ P A P+FE + +L+ L+
Sbjct: 50 IGNTRALAHVSCSLDRPSEVRPSEGKIVFKVELPPLASPSFELNKKSAFAIDLNRLLEKA 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
++ + ID+ L V G+ CW L ++ ++ +GNL DAL A AL + P
Sbjct: 110 IVQSRC-----IDIEELCVRAGEQCWTLRVEVTALNHEGNLSDALCLAAMGALMHFKRPE 164
Query: 121 VHV 123
V V
Sbjct: 165 VTV 167
>gi|443726519|gb|ELU13639.1| hypothetical protein CAPTEDRAFT_176766 [Capitella teleta]
Length = 340
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 6/130 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G++ V+ V E+ P +P +G + + V+ SP A PTFE G + EL+ L+
Sbjct: 50 LGNSIVMTQVSCEVTPPKQTRPSEGILFVNVELSPMASPTFEPGGRMSDFGVELNRLLER 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
CL + +D SL ++ G W + +D V++ DGNL+D A+ AAL++ P
Sbjct: 110 CLKESRC-----VDTESLCIMAGLKVWTIRVDCHVLNYDGNLVDCCSASAIAALAHFRRP 164
Query: 120 SVHVAAEAAS 129
V V+ E +
Sbjct: 165 DVSVSGEEVT 174
>gi|379003147|ref|YP_005258819.1| RNase PH-related exoribonuclease [Pyrobaculum oguniense TE7]
gi|375158600|gb|AFA38212.1| RNase PH-related exoribonuclease [Pyrobaculum oguniense TE7]
Length = 276
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 18/163 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSA---- 56
+G T VIA VK LG+P PD+G + + + P A P E +E + EL+
Sbjct: 59 LGKTHVIAGVKVGLGQPFPDAPDEGVLVVSAEVLPHASPYTEVGPPDESAIELARVVDRG 118
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++HC +D L V EG + L++D +I+ DGNL+DA A AAL NT
Sbjct: 119 IRHC---------GYVDFKKLAV-EGGKAYVLWVDLYIINDDGNLVDAANLASVAALKNT 168
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
+P+V V E+ + ++D +++ L +TS VPV ++ K+
Sbjct: 169 QLPAV-VKDESGA---VKLDRNNKSPLPLETSKVPVAVSVGKI 207
>gi|15897635|ref|NP_342240.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus solfataricus
P2]
gi|284174961|ref|ZP_06388930.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus solfataricus
98/2]
gi|384434250|ref|YP_005643608.1| 3' exoribonuclease [Sulfolobus solfataricus 98/2]
gi|29337006|sp|Q9UXC0.1|ECX2_SULSO RecName: Full=Probable exosome complex exonuclease 2
gi|71042716|pdb|2BR2|A Chain A, Rnase Ph Core Of The Archaeal Exosome
gi|71042718|pdb|2BR2|C Chain C, Rnase Ph Core Of The Archaeal Exosome
gi|71042720|pdb|2BR2|E Chain E, Rnase Ph Core Of The Archaeal Exosome
gi|71042722|pdb|2BR2|G Chain G, Rnase Ph Core Of The Archaeal Exosome
gi|71042724|pdb|2BR2|I Chain I, Rnase Ph Core Of The Archaeal Exosome
gi|71042726|pdb|2BR2|K Chain K, Rnase Ph Core Of The Archaeal Exosome
gi|71042728|pdb|2BR2|M Chain M, Rnase Ph Core Of The Archaeal Exosome
gi|71042730|pdb|2BR2|O Chain O, Rnase Ph Core Of The Archaeal Exosome
gi|71042732|pdb|2BR2|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome
gi|71042734|pdb|2BR2|S Chain S, Rnase Ph Core Of The Archaeal Exosome
gi|71042736|pdb|2BR2|U Chain U, Rnase Ph Core Of The Archaeal Exosome
gi|71042738|pdb|2BR2|W Chain W, Rnase Ph Core Of The Archaeal Exosome
gi|83754538|pdb|2C37|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754540|pdb|2C37|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754542|pdb|2C37|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754544|pdb|2C37|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754546|pdb|2C37|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754548|pdb|2C37|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754550|pdb|2C37|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754552|pdb|2C37|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754554|pdb|2C37|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754556|pdb|2C37|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754558|pdb|2C37|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754560|pdb|2C37|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754562|pdb|2C38|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754566|pdb|2C38|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754568|pdb|2C38|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754570|pdb|2C38|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754572|pdb|2C38|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754574|pdb|2C38|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754576|pdb|2C38|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754578|pdb|2C38|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754580|pdb|2C38|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754582|pdb|2C38|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754586|pdb|2C39|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754588|pdb|2C39|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754590|pdb|2C39|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754592|pdb|2C39|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754594|pdb|2C39|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754596|pdb|2C39|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754598|pdb|2C39|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754600|pdb|2C39|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754602|pdb|2C39|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754604|pdb|2C39|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754606|pdb|2C39|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754608|pdb|2C39|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|313507220|pdb|2C38|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|313507221|pdb|2C38|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|6015744|emb|CAB57571.1| conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|13813902|gb|AAK41030.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261602404|gb|ACX92007.1| 3' exoribonuclease [Sulfolobus solfataricus 98/2]
Length = 275
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 172
Query: 121 VHVAAEAASDEQPEV 135
V + S + EV
Sbjct: 173 VEQHSNGISVNKNEV 187
>gi|126031137|pdb|2JE6|A Chain A, Structure Of A 9-Subunit Archaeal Exosome
gi|145579800|pdb|2JEA|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
gi|145579804|pdb|2JEB|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
gi|407943801|pdb|4BA1|A Chain A, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
gi|407943804|pdb|4BA2|A Chain A, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
Length = 277
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 60 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 119
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 120 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 174
Query: 121 VHVAAEAASDEQPEV 135
V + S + EV
Sbjct: 175 VEQHSNGISVNKNEV 189
>gi|148225933|ref|NP_001079391.1| exosome component 8 [Xenopus laevis]
gi|27371055|gb|AAH41271.1| MGC52847 protein [Xenopus laevis]
gi|76779666|gb|AAI06634.1| MGC52847 protein [Xenopus laevis]
Length = 276
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+ V+ VKAEL P A PDKG V VD +P F G GEE A+++S
Sbjct: 53 LGNCTVLCGVKAELAAPPADSPDKGYVVPNVDLTPLCSSQFRPGPPGEE--AQVASQFMA 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
++ + L + GK+ W LY D + + DGNLLD A+ AAL N +P
Sbjct: 111 DVIDNSQM----LLKEDLCIAHGKLAWVLYCDLICLDYDGNLLDTCMCALVAALQNVRLP 166
Query: 120 SVHVAAE 126
SV + E
Sbjct: 167 SVKINEE 173
>gi|335296834|ref|XP_001927006.3| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP43-like [Sus scrofa]
Length = 246
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE G P PDKG + VD SP F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFGAPPTDAPDKGYIVPNVDLSPLCSWRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + ++ DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIXNSQIIQKEDLCISPGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHV 123
V++
Sbjct: 167 EVNI 170
>gi|320163129|gb|EFW40028.1| polymyositis/scleroderma autoantigen 1 [Capsaspora owczarzaki ATCC
30864]
Length = 313
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 12/162 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V EL +P +P +G V V+ SP A P FE GR E+ + ELS ++
Sbjct: 50 LGRTRVMVQVSCELTKPFPDRPAEGAVQFNVELSPMASPAFEPGRPSEQ-AIELSRMVER 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + ID +SL V+ G+ W++ +D + DGNL DAL A A L + P
Sbjct: 109 VVKDSNA-----IDTTSLCVISGEAVWNIRVDLHALDHDGNLSDALCMAALAGLIHFRKP 163
Query: 120 SVHVAAEAASDEQPE-----VDISDEEFLQFDTSGVPVITTL 156
V + + ++ DE D+ + E L +P+ T
Sbjct: 164 EVSMPSLSSGDESVAGNLIIHDVREREPLPLSVHHMPLCVTF 205
>gi|390333942|ref|XP_788833.3| PREDICTED: exosome complex component RRP45-like [Strongylocentrotus
purpuratus]
Length = 479
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 9/156 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T ++A V E+ P +P++G++ + ++ SP A TFE + EL+ L+
Sbjct: 48 MGDTRILAQVSCEVVEPKENRPNEGQLFVNLELSPMASTTFEAGRLSDYGIELNRLLERT 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ +D+ SL +V G+ W + +D V++ DGN+LD+ A AALS+ P
Sbjct: 108 VKDSRA-----VDVESLCIVAGEKVWKIRLDVHVLNHDGNILDSACLAALAALSHFRRPD 162
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V V E+ + P+ D + + + +PV T
Sbjct: 163 VTVIGESVTIHSPQ----DRDPVPLNVHHIPVCVTF 194
>gi|389612638|dbj|BAM19744.1| unknown protein, partial [Papilio xuthus]
Length = 204
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 10/160 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G+T VI K EL P A PD G + V+ P P F + + +S+ +
Sbjct: 17 YGNTTVICGTKLELAAPKAEDPDSGFLVTNVELVPLCSPKFRPGPPSDHAQVISNVVSEI 76
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K I+L L +V K+ W LY D + + +DGN++DA A+ A+L +P+
Sbjct: 77 INNSKF-----INLKDLCIVSDKLAWVLYCDIVCLDNDGNVVDACITALTASLKTLSLPT 131
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVP 160
V E E+ +VD ++ + +G+PV T+ P
Sbjct: 132 VTYDPET---EEIKVDTNNR--ISLKVNGLPVATSFAIFP 166
>gi|296243059|ref|YP_003650546.1| ribosomal RNA-processing protein RRP42 [Thermosphaera aggregans DSM
11486]
gi|296095643|gb|ADG91594.1| ribosomal RNA-processing protein RRP42 [Thermosphaera aggregans DSM
11486]
Length = 289
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 15/159 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T VI VK ELG P A +PD+G + + + P A TFE +E S E++ +
Sbjct: 58 LGTTQVITGVKIELGEPFADRPDEGVLQVHAEFVPLASQTFEPGPPDENSIEVARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ ID LVV GK W ++ D +I GN++DA + AL+ IP
Sbjct: 118 LREPKA-----IDFKQLVVAPGKKVWVVFNDIYLIDHGGNIMDASMLSSMLALATAKIPY 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
+++P V + D + TS +PV T + V
Sbjct: 173 Y-------EEKEPGVYVVDN---KRHTSPLPVNTLVATV 201
>gi|149064770|gb|EDM14921.1| exosome component 8 (predicted), isoform CRA_a [Rattus norvegicus]
Length = 276
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PD+G V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L + PV T+
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNVRAN--PVATSF 198
>gi|383858184|ref|XP_003704582.1| PREDICTED: exosome complex component RRP45-like [Megachile
rotundata]
Length = 410
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T +A V ++ +P +P++G + I V+ + F+ E+S +S L+ C
Sbjct: 50 LGQTRAVAQVTCDIQQPKTSRPNEGMLHINVELNAMVTQNFDAGKQAEVSVLISRQLEKC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K IDL SL ++ K W+L +D +I+ DGNL+D A AALS+ P
Sbjct: 110 FKDSKC-----IDLESLCIIADKKVWNLRVDINIINHDGNLIDCASIATLAALSHFHRPD 164
Query: 121 V 121
V
Sbjct: 165 V 165
>gi|330835837|ref|YP_004410565.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina
Ar-4]
gi|329567976|gb|AEB96081.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina
Ar-4]
Length = 283
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK E P + P++G + + + P A TFE +E + ELS +
Sbjct: 58 LGDTTVLAGVKIEEDEPYSDTPNQGNLVVNAELLPLAYETFEPGPPDENAIELSRVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DLS+LV+ GK W +++D V+ GN+LDA + AAL +T +P
Sbjct: 118 LRDSKA-----VDLSALVIEPGKRVWTVWVDISVLDYGGNILDACTLSAVAALYDTKLPR 172
Query: 121 V 121
+
Sbjct: 173 I 173
>gi|73993245|ref|XP_534492.2| PREDICTED: exosome complex component RRP43 isoform 1 [Canis lupus
familiaris]
Length = 276
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 72/157 (45%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLSWVLYCDIICLDYDGNILDACTFALLAALKNAQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E EV++ + +L T PV T+
Sbjct: 167 EVTINEETG---LAEVNLKKKSYLNIRTH--PVATSF 198
>gi|14601411|ref|NP_147948.1| exosome complex RNA-binding protein Rrp42 [Aeropyrum pernix K1]
gi|29337018|sp|Q9YC05.1|ECX2_AERPE RecName: Full=Probable exosome complex exonuclease 2
gi|5105129|dbj|BAA80443.1| exosome complex exonuclease Rrp42 homologue [Aeropyrum pernix K1]
Length = 276
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA VKA +G P P++G + + + P A P FE +E + EL+ +
Sbjct: 58 LGKTQVIAGVKAGVGAPFKDTPNQGVLTVHAEFVPLASPVFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L GA +DL SLV+ G+ W L++D +I DGNL DA A A L +P
Sbjct: 118 L----REVGA-VDLESLVIRPGEKVWVLWVDLYIIDHDGNLFDASMLATMAVLLTARLPR 172
>gi|297693867|ref|XP_002824217.1| PREDICTED: exosome complex component RRP43 [Pongo abelii]
Length = 276
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 72/157 (45%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PD G V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPTDAPDTGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNVRTH--PVATSF 198
>gi|227827678|ref|YP_002829458.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
M.14.25]
gi|229584882|ref|YP_002843384.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
M.16.27]
gi|259645402|sp|C3N5R4.1|ECX2_SULIA RecName: Full=Probable exosome complex exonuclease 2
gi|259645405|sp|C3MVG5.1|ECX2_SULIM RecName: Full=Probable exosome complex exonuclease 2
gi|227459474|gb|ACP38160.1| 3' exoribonuclease [Sulfolobus islandicus M.14.25]
gi|228019932|gb|ACP55339.1| 3' exoribonuclease [Sulfolobus islandicus M.16.27]
Length = 275
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALHNTKVYK 172
Query: 121 VH 122
V
Sbjct: 173 VE 174
>gi|227830375|ref|YP_002832155.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
L.S.2.15]
gi|229579193|ref|YP_002837591.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
Y.G.57.14]
gi|238619849|ref|YP_002914675.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
M.16.4]
gi|284997881|ref|YP_003419648.1| 3'exoribonuclease [Sulfolobus islandicus L.D.8.5]
gi|259645403|sp|C4KHE3.1|ECX2_SULIK RecName: Full=Probable exosome complex exonuclease 2
gi|259645404|sp|C3MQ47.1|ECX2_SULIL RecName: Full=Probable exosome complex exonuclease 2
gi|259645407|sp|C3NED0.1|ECX2_SULIY RecName: Full=Probable exosome complex exonuclease 2
gi|227456823|gb|ACP35510.1| 3' exoribonuclease [Sulfolobus islandicus L.S.2.15]
gi|228009907|gb|ACP45669.1| 3' exoribonuclease [Sulfolobus islandicus Y.G.57.14]
gi|238380919|gb|ACR42007.1| 3' exoribonuclease [Sulfolobus islandicus M.16.4]
gi|284445776|gb|ADB87278.1| 3'exoribonuclease [Sulfolobus islandicus L.D.8.5]
Length = 275
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 172
Query: 121 VH 122
V
Sbjct: 173 VE 174
>gi|427795691|gb|JAA63297.1| Putative exosome component 9, partial [Rhipicephalus pulchellus]
Length = 514
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 7/124 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A V AE+ P +P +G++ + ++ SP A P FE GR G+ E++ L+
Sbjct: 96 LGDTKVMAQVSAEIIVPKPGRPTEGELFVNLELSPMAAPHFEAGRLGD-YGVEVARLLER 154
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
C+ + IDL SL VV G+ W L +D V++ GN+++ G A AL + P
Sbjct: 155 CIRDSQC-----IDLESLCVVSGEKVWALRVDAQVLNHQGNIVECAGIATIGALMHFRRP 209
Query: 120 SVHV 123
V V
Sbjct: 210 DVTV 213
>gi|355686810|gb|AER98194.1| exosome component 8 [Mustela putorius furo]
Length = 246
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQFIA 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
++ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 111 DVIENSQI----IQKEDLCISPGKLSWVLYCDIICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E EV++ + +L T PV T+
Sbjct: 167 EVTINEETG---LAEVNLKKKSYLNIRTH--PVATSF 198
>gi|427795753|gb|JAA63328.1| Putative exosome component 9, partial [Rhipicephalus pulchellus]
Length = 477
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A V AE+ P +P +G++ + ++ SP A P FE GR G+ E++ L+
Sbjct: 96 LGDTKVMAQVSAEIIVPKPGRPTEGELFVNLELSPMAAPHFEAGRLGD-YGVEVARLLER 154
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
C+ + IDL SL VV G+ W L +D V++ GN+++ G A AL + P
Sbjct: 155 CIRDSQC-----IDLESLCVVSGEKVWALRVDAQVLNHQGNIVECAGIATIGALMHFRRP 209
Query: 120 SVHVAAEAASDEQPE 134
V V + P
Sbjct: 210 DVTVIGTEVTVHNPR 224
>gi|301109940|ref|XP_002904050.1| exosome complex exonuclease RRP43, putative [Phytophthora infestans
T30-4]
gi|262096176|gb|EEY54228.1| exosome complex exonuclease RRP43, putative [Phytophthora infestans
T30-4]
Length = 283
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ ++K +G P+ PD+G++AI V SP F GR EE + + S L
Sbjct: 66 LGKTSVLTAIKLAVGTPAVATPDQGELAIQVHLSPLCSNRFTVGRPSEE-AQSIGSQLTR 124
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ G + +++ SL +V+G+ W L +D + DGN+LDA +I AAL +P
Sbjct: 125 VIAGSRV-----VEMESLSIVKGQSAWKLMVDVYGVDHDGNVLDAALTSIIAALKTLKLP 179
Query: 120 SVHV 123
+ V
Sbjct: 180 ATSV 183
>gi|254675240|ref|NP_001157042.1| exosome complex component RRP43 isoform 1 [Mus musculus]
Length = 280
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 74/161 (45%), Gaps = 16/161 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIF----VDCSPTAEPTFE-GRGGEELSAELSS 55
+G+T VI VKAE P PD+G V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPVDAPDRGYVVFLSVPNVDLPPLCSSRFRTGPPGEE--AQVTS 110
Query: 56 ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N
Sbjct: 111 QF----IADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKN 166
Query: 116 TGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
+P V + E A EV++ + +L T+ PV T+
Sbjct: 167 VQLPEVTINEETA---LAEVNLKKKSYLNVRTN--PVATSF 202
>gi|229582055|ref|YP_002840454.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
Y.N.15.51]
gi|259645406|sp|C3NHC2.1|ECX2_SULIN RecName: Full=Probable exosome complex exonuclease 2
gi|228012771|gb|ACP48532.1| 3' exoribonuclease [Sulfolobus islandicus Y.N.15.51]
Length = 275
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 172
Query: 121 VH 122
V
Sbjct: 173 VE 174
>gi|299689088|pdb|3L7Z|A Chain A, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689091|pdb|3L7Z|D Chain D, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689094|pdb|3L7Z|G Chain G, Crystal Structure Of The S. Solfataricus Archaeal Exosome
Length = 271
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYTTFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 172
Query: 121 VH 122
V
Sbjct: 173 VE 174
>gi|118792101|ref|XP_320154.3| AGAP012402-PA [Anopheles gambiae str. PEST]
gi|116116739|gb|EAA00202.3| AGAP012402-PA [Anopheles gambiae str. PEST]
Length = 274
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 10/164 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KAEL P+A+ P G + VD SP + P++ + + S ++
Sbjct: 54 VGNTTVVCGIKAELATPNALAPRHGFLVPNVDLSPVSSPSYRPGPPCDEAQVYSQSVADA 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + IDL L + GK+ W LY D + + DG +LDA A+ AA +P+
Sbjct: 114 ISNARC-----IDLQQLCISPGKLVWCLYCDLVCLDHDGCVLDAAIIALVAAFHTVKLPT 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLI 164
+ ++ E+ E D S L VPV T+ V LI
Sbjct: 169 IQYNSDT---EETEADTS--RLLPLTVDCVPVTTSFVMVAGRLI 207
>gi|385773350|ref|YP_005645916.1| 3' exoribonuclease [Sulfolobus islandicus HVE10/4]
gi|385775988|ref|YP_005648556.1| 3' exoribonuclease [Sulfolobus islandicus REY15A]
gi|323474736|gb|ADX85342.1| 3' exoribonuclease [Sulfolobus islandicus REY15A]
gi|323477464|gb|ADX82702.1| 3' exoribonuclease [Sulfolobus islandicus HVE10/4]
Length = 275
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 172
Query: 121 VH 122
V
Sbjct: 173 VE 174
>gi|156383487|ref|XP_001632865.1| predicted protein [Nematostella vectensis]
gi|156219927|gb|EDO40802.1| predicted protein [Nematostella vectensis]
Length = 268
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V E+ +P + G + I V+ SP A P FE EL EL+ ++
Sbjct: 28 LGKTRVLAQVSCEITKPKTNRQTDGHIYINVELSPMASPAFEAGRMSELGVELNRFVERF 87
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ID SL +V G+ W + +D V+ GN+LD + ALS+ P
Sbjct: 88 YIESRA-----IDTESLCIVAGEKVWSVRVDIQVLDHSGNILDCACISAITALSHFRRPD 142
Query: 121 VHVAAEAAS 129
V V+ E +
Sbjct: 143 VSVSGEEVT 151
>gi|344281856|ref|XP_003412693.1| PREDICTED: exosome complex component RRP43-like [Loxodonta
africana]
Length = 282
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P PDKG + VD P F G GEE A+++S
Sbjct: 59 LGNTTVICGIKAEFAAPPTDAPDKGYIVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 114
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + +GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 115 --IADVIENSQIIQKEDLCISQGKLAWVLYCDLICLDYDGNILDASTFALLAALKNVQLP 172
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V++ E A EV++ + L + PV T+
Sbjct: 173 EVNINEETA---LAEVNLKKKTHL--NIRNYPVATSF 204
>gi|291229746|ref|XP_002734834.1| PREDICTED: exosome component 9-like [Saccoglossus kowalevskii]
Length = 421
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 10/138 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V E+ P +P +G + V+ SP A P FE E E+ L+
Sbjct: 80 LGDTRVLCQVSCEIIEPRQNRPTEGGLYFNVELSPMASPLFEPGRQSEFGIEIIRFLEKT 139
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ID SL +V G+ W++ ID V++ DGN++D + A ALS+ P
Sbjct: 140 VRDSRA-----IDTESLCIVAGEKVWEIRIDIHVLNHDGNIMDCVTMAAVTALSHFRRPD 194
Query: 121 VHVAAE-----AASDEQP 133
V V E +A+D P
Sbjct: 195 VSVVGEDVQVHSAADRDP 212
>gi|10640638|emb|CAC12416.1| rRNA processing protein (yeast RRP45) related protein [Thermoplasma
acidophilum]
Length = 240
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A VK E G P PD+G + V+ P A P+FE +L+ E+S +
Sbjct: 36 LGNTRVVAGVKIEAGEPFPDTPDQGVLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRG 95
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K I LV+ +GK W +++D V+ DGNL+DA A AAL N +P+
Sbjct: 96 IRESKM-----ISPEKLVIEQGKKVWIVFLDINVLDYDGNLIDASTIAAVAALRNAVVPA 150
>gi|16082607|ref|NP_394748.1| exosome complex RNA-binding protein Rrp42 [Thermoplasma acidophilum
DSM 1728]
gi|29336948|sp|Q9HIP1.2|ECX2_THEAC RecName: Full=Probable exosome complex exonuclease 2
Length = 260
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A VK E G P PD+G + V+ P A P+FE +L+ E+S +
Sbjct: 56 LGNTRVVAGVKIEAGEPFPDTPDQGVLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRG 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K I LV+ +GK W +++D V+ DGNL+DA A AAL N +P+
Sbjct: 116 IRESKM-----ISPEKLVIEQGKKVWIVFLDINVLDYDGNLIDASTIAAVAALRNAVVPA 170
>gi|367050304|ref|XP_003655531.1| hypothetical protein THITE_2170949 [Thielavia terrestris NRRL 8126]
gi|347002795|gb|AEO69195.1| hypothetical protein THITE_2170949 [Thielavia terrestris NRRL 8126]
Length = 293
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A AE+ P A +P G I + SP P FE E LS L+
Sbjct: 51 LGRTRVLAKATAEVTVPYADRPLDGIFTIATELSPMTSPAFEVNRPTETEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ CW + +D V+S DGNL+DA A+ AAL + P
Sbjct: 111 V--RRSGA---LDTESLCLVAGQKCWSVRVDVHVLSHDGNLIDASCLAVVAALRHFRKPD 165
Query: 121 VHVAA 125
+ A
Sbjct: 166 TSMDA 170
>gi|431903093|gb|ELK09269.1| Exosome complex exonuclease RRP43 [Pteropus alecto]
Length = 281
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 72/157 (45%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P PDKG V VD P F G GEE A+++S
Sbjct: 59 LGNTTVICGIKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 114
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 115 --IADVIENSQIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 172
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + L T PV T+
Sbjct: 173 EVTINEETA---LAEVNLKKKSCLNIRTH--PVATSF 204
>gi|402086889|gb|EJT81787.1| exosome complex exonuclease RRP45 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 302
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++A AE+ P A +P G I + SP A P FE E LS L+
Sbjct: 51 LGKTRILAKTSAEVTVPYADRPFDGIFNIVTELSPMASPAFEVNRPTEAEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL ++ G CW + +D V+S DGNL+DA A+ AL + P
Sbjct: 111 V--RRSGA---LDTESLCLIAGLKCWSVRVDLHVLSHDGNLVDASCLAVVTALRHFRKPD 165
Query: 121 VHVAAEAASDEQP 133
+ EA + P
Sbjct: 166 TSIEGEALTVYTP 178
>gi|115446633|ref|NP_001047096.1| Os02g0550700 [Oryza sativa Japonica Group]
gi|50725756|dbj|BAD33267.1| putative polymyositis/scleroderma autoantigen 1 [Oryza sativa
Japonica Group]
gi|113536627|dbj|BAF09010.1| Os02g0550700 [Oryza sativa Japonica Group]
Length = 395
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 26/169 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ A+L +P +P++G +AIF + SP A+P FE GR GE + EL +
Sbjct: 53 LGDTRVMGYATAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGES-AIELGRVVDR 111
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL VV GK W + +D ++ + GNL+DA A AALS P
Sbjct: 112 GLRESRA-----VDMESLCVVAGKHVWSVRVDLHILDNGGNLIDAANIAALAALSTFRRP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V E +V + D E + P PL +H+L
Sbjct: 167 ECTVGGEDGQ----QVTVHDPE---------------VRDPLPLTIHHL 196
>gi|171685834|ref|XP_001907858.1| hypothetical protein [Podospora anserina S mat+]
gi|170942878|emb|CAP68531.1| unnamed protein product [Podospora anserina S mat+]
Length = 297
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A AEL P A +P G I + SP P FE E +S L+
Sbjct: 51 LGKTRVLAKASAELTVPYADRPLDGIFNIATELSPMTSPAFEVNRPTETEVLISRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D SL +V G+ CW + +D V+S DGNL+DA A+ AAL + P
Sbjct: 111 V--RRSGA---LDTESLCLVAGQKCWSIRVDVHVLSHDGNLIDAACFAVVAALRHFRKP 164
>gi|52549527|gb|AAU83376.1| 3'-5' exoribonuclease [uncultured archaeon GZfos27G5]
Length = 257
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T+V+ VK ELG P PDKG + + P A P FE E S +L+ +
Sbjct: 53 IGDTEVLVGVKVELGTPFPDTPDKGVIITNAELVPLASPKFESGPPNENSIQLARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ G ++ IDL L + EG+ W ++ID V+ +GNL+DA +L N IP+
Sbjct: 113 IRGSET-----IDLDKLCIEEGEKVWMVFIDIHVLDDNGNLVDAAALGAITSLLNLRIPN 167
>gi|389740648|gb|EIM81838.1| hypothetical protein STEHIDRAFT_171488 [Stereum hirsutum FP-91666
SS1]
Length = 287
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ VKAE+ P +PD+G + +D P P F+ + + LS L
Sbjct: 69 LGDTTIVCGVKAEIAEPDLDRPDEGWIVPNIDLPPICSPKFKPGPPSDEAQALSDRLFDS 128
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L + LSSL + GK W LY+D I+ DGN+ DA A+ +AL NT +P
Sbjct: 129 LTSSNV-----LPLSSLCIEPGKSAWVLYVDATCINYDGNVFDAALVAMVSALKNTLLP 182
>gi|52548824|gb|AAU82673.1| 3'-5' exoribonuclease [uncultured archaeon GZfos19A5]
Length = 257
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T+V+ VK ELG P PDKG + + P A P FE E S +L+ +
Sbjct: 53 IGDTEVLVGVKVELGTPFPDTPDKGVIITNAELVPLASPKFESGPPNENSIQLARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ G ++ IDL L + EG+ W ++ID V+ +GNL+DA +L N IP+
Sbjct: 113 IRGSET-----IDLDKLCIEEGEKVWMVFIDIHVLDDNGNLVDAAALGAITSLLNLRIPN 167
>gi|260806963|ref|XP_002598353.1| hypothetical protein BRAFLDRAFT_261208 [Branchiostoma floridae]
gi|229283625|gb|EEN54365.1| hypothetical protein BRAFLDRAFT_261208 [Branchiostoma floridae]
Length = 444
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V ++ P +P +G + I ++ SP A P FE E E++ L+
Sbjct: 50 LGDTKVLAQVSGKIEEPKKNRPTEGSIIINLELSPMASPAFEPGRPTESGIEMNRILERN 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ +D SL +V G+ W + D V++ +GN++DA A ALS+ P
Sbjct: 110 IRDSRA-----VDTESLCIVAGEKVWSIRADVHVLNDEGNIMDAASIAAITALSHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V V E + PE D + + +PV T
Sbjct: 165 VSVMGEEVTVHSPE----DRDPVPLSVHHMPVCVTF 196
>gi|301791884|ref|XP_002930910.1| PREDICTED: exosome complex exonuclease RRP43-like [Ailuropoda
melanoleuca]
Length = 276
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 71/157 (45%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFAAPPTDTPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLSWVLYCDIICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E EV + + +L T PV T+
Sbjct: 167 EVTINEETG---LAEVHLKKKSYLNIRTH--PVATSF 198
>gi|288560608|ref|YP_003424094.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
ruminantium M1]
gi|288543318|gb|ADC47202.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
ruminantium M1]
Length = 263
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI VK +G P A P+ G + + P A P FE S EL+ +
Sbjct: 51 LGDTQVIVGVKPTIGEPFADTPNLGVLMTNCELLPMAAPGFEPGPPSPESIELARVVDRG 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +DL L + EGK W L+ID VI DGNL D A+ +AL NT +P
Sbjct: 111 IRESEL-----VDLEKLCIEEGKKVWMLFIDLHVIDYDGNLFDCANLAVMSALLNTKLP- 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
AE D EV +S++E + ++T K+
Sbjct: 165 ---VAEYIDD---EVVLSEDETMDLPVRDKLALSTFVKI 197
>gi|383319304|ref|YP_005380145.1| RNase PH-related exoribonuclease [Methanocella conradii HZ254]
gi|379320674|gb|AFC99626.1| RNase PH-related exoribonuclease [Methanocella conradii HZ254]
Length = 259
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G + V+ +K + G P PD G + ++ P A PTFE E + EL+ +
Sbjct: 53 IGESQVVVGIKVQPGEPFPDAPDSGVIITNLELVPLASPTFEAGPPREDAIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA IDLS L + G+ W ++ID V+ DGNL+DA AAL NT IP+
Sbjct: 113 VR--ESGA---IDLSKLCIESGQKVWMVFIDVHVLDHDGNLMDASSLGAIAALMNTVIPN 167
>gi|333986696|ref|YP_004519303.1| 3' exoribonuclease [Methanobacterium sp. SWAN-1]
gi|333824840|gb|AEG17502.1| 3' exoribonuclease [Methanobacterium sp. SWAN-1]
Length = 263
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T ++ VK ++ P + P G + + P A P FE +E S ELS C
Sbjct: 52 IGNTQIMVGVKTQIAAPFSDTPQMGVLMTNSELLPMAAPNFEPGPPDENSVELSRVTDRC 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K +DL L ++EGK W +++D ++ +GNL+D AAL N IP+
Sbjct: 112 VREAKV-----VDLEKLCIIEGKKVWMIFVDLHILDYEGNLMDTAVLGTVAALMNAKIPT 166
Query: 121 VHV 123
V
Sbjct: 167 ATV 169
>gi|288930698|ref|YP_003434758.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642]
gi|288892946|gb|ADC64483.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642]
Length = 259
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ VK + G P P+KG + + P A PTFE +E + EL+ +
Sbjct: 53 LGNTQVLVGVKMQPGEPFPDAPNKGIIITNAELVPLASPTFEPGPPDENAIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ +DL L + EG+ W ++ID + DGNLLDA AAL NT +P+
Sbjct: 113 IRESEA-----VDLEKLCIEEGEKVWLIFIDIWALDDDGNLLDASALGAIAALLNTTVPA 167
>gi|336469878|gb|EGO58040.1| hypothetical protein NEUTE1DRAFT_82175 [Neurospora tetrasperma FGSC
2508]
gi|350290437|gb|EGZ71651.1| ribosomal protein S5 domain 2-like protein [Neurospora tetrasperma
FGSC 2509]
Length = 297
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++A AE+ P A +P G I + SP A P FE E LS L+
Sbjct: 52 LGKTKILAKASAEVTVPFADRPLDGIFTIATELSPMAAPHFEVNRPTETEVLLSRLLEKT 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D SL +V G+ CW + +D V+S DGNL DA A+ AAL + P
Sbjct: 112 V--RRSGA---LDTESLCLVAGQKCWSVRVDVHVLSHDGNLTDAACFAVVAALRHFRKP 165
>gi|85087002|ref|XP_957805.1| hypothetical protein NCU00334 [Neurospora crassa OR74A]
gi|28918900|gb|EAA28569.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 297
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++A AE+ P A +P G I + SP A P FE E LS L+
Sbjct: 52 LGKTKILAKASAEVTVPFADRPLDGIFTIATELSPMAAPHFEVNRPTETEVLLSRLLEKT 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D SL +V G+ CW + +D V+S DGNL DA A+ AAL + P
Sbjct: 112 V--RRSGA---LDTESLCLVAGQKCWSVRVDVHVLSHDGNLTDAACFAVVAALRHFRKP 165
>gi|374325947|ref|YP_005084147.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum sp. 1860]
gi|356641216|gb|AET31895.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum sp. 1860]
Length = 273
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 22/165 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSA---- 56
+G T V+A VK LG+P PD+G + + + P A P E +E + EL+
Sbjct: 59 LGKTHVVAGVKVGLGQPFPDAPDEGVLVVNAEVLPHASPYTEVGPPDESAIELARVVDRG 118
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++HC +D LVV EG + L+ID VI+ DGNL+DA A AAL NT
Sbjct: 119 IRHC---------GYVDFKKLVV-EGGKAYILWIDLYVINDDGNLVDAANLASVAALKNT 168
Query: 117 GIPSVHVAAEAASDEQPEV--DISDEEFLQFDTSGVPVITTLTKV 159
+P+ A DE V D +++ L D + PV ++ K+
Sbjct: 169 QLPT------AVKDEAGAVKLDRNNKLPLPVDVAKAPVAASVGKI 207
>gi|148230376|ref|NP_001088781.1| uncharacterized protein LOC496046 [Xenopus laevis]
gi|56269196|gb|AAH87445.1| LOC496046 protein [Xenopus laevis]
Length = 276
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+ V+ VKAE P A P+KG V VD SP F G GEE A+++S
Sbjct: 53 LGNCTVLCGVKAEFAAPPADAPNKGYVVPNVDLSPLCSSQFRPGPPGEE--AQVASQFMA 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
++ + L + GK+ W LY D + + DGNLLD A+ AAL N +P
Sbjct: 111 DVIDNSQM----LLKEDLCIRHGKLAWVLYCDLICLDYDGNLLDTCTCALVAALQNVRLP 166
Query: 120 SVHVAAE 126
SV + E
Sbjct: 167 SVKINEE 173
>gi|367027518|ref|XP_003663043.1| hypothetical protein MYCTH_2304429 [Myceliophthora thermophila ATCC
42464]
gi|347010312|gb|AEO57798.1| hypothetical protein MYCTH_2304429 [Myceliophthora thermophila ATCC
42464]
Length = 293
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A AE+ P A +P G I + SP P FE E LS L+
Sbjct: 51 LGKTRVLAKATAEVTVPYADRPLDGIFTIATELSPMTSPAFEVNRPTETEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D SL +V G+ CW + +D V+S DGNL DA A+ AAL + P
Sbjct: 111 V--RRSGA---LDTESLCLVAGQKCWSVRVDVHVLSHDGNLTDAACFAVVAALRHFRKP 164
>gi|307207928|gb|EFN85487.1| Exosome complex exonuclease RRP43 [Harpegnathos saltator]
Length = 279
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+ +KAEL P P+ G + V+ SP P F G A++ S L
Sbjct: 53 LGSTTVVCGIKAELAIPKTDTPECGYIIPNVELSPLCSPKFRP-GPPSEQAQVISKLIDI 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L IDL L + + K+ W LY D L ++ +G+++DA A+ AAL +P
Sbjct: 112 ILKN----STAIDLKDLCICKRKLVWVLYCDMLCLNYNGSVIDACTGALTAALKTLTLPE 167
Query: 121 VHVAAEA 127
V+ E
Sbjct: 168 VNYNLET 174
>gi|257076445|ref|ZP_05570806.1| exosome complex RNA-binding protein Rrp42 [Ferroplasma acidarmanus
fer1]
Length = 260
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A +K E G P PD G +A+ ++ P A PTFE E + E S +
Sbjct: 56 IGKTKVVAGIKVEEGDPFEDSPDSGVMALNIELLPMAFPTFESGPPSEQAIEYSRVVDRG 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K +D S LV+ GK W +++D V++ DGN++DA A AL NT +P+
Sbjct: 116 IRESKM-----VDTSKLVIESGKRVWMIFVDIDVLNYDGNIIDAATLAAVTALKNTVVPA 170
Query: 121 VHVAAEAAS 129
+ + S
Sbjct: 171 SKIGQKDYS 179
>gi|336258954|ref|XP_003344283.1| hypothetical protein SMAC_06484 [Sordaria macrospora k-hell]
gi|380091844|emb|CCC10573.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 297
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++A AE+ P A +P G I + SP A P FE E LS L+
Sbjct: 52 LGKTKILAKASAEVTVPFADRPLDGIFTIATELSPMAAPHFEVNRPTETEVLLSRLLEKT 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D SL +V G+ CW + +D V+S DGNL DA A+ AAL + P
Sbjct: 112 V--RRSGA---LDTESLCLVAGQKCWSVRVDVHVLSHDGNLTDAACFAVVAALRHFRKP 165
>gi|13541139|ref|NP_110827.1| exosome complex RNA-binding protein Rrp42 [Thermoplasma volcanium
GSS1]
gi|29336898|sp|Q97BZ4.1|ECX2_THEVO RecName: Full=Probable exosome complex exonuclease 2
gi|14324526|dbj|BAB59453.1| nucleotidyltransferase [Thermoplasma volcanium GSS1]
Length = 260
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK E G P PD+G + V+ P A P+FE +L+ E+S +
Sbjct: 56 LGKTRVVAGVKIEAGEPFPDTPDQGVLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRG 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K I LV+ +GK W +++D V+ DGNL+DA A +AL N +P+
Sbjct: 116 IRESKM-----ISPDKLVIEQGKKVWIVFLDINVLDYDGNLIDACTIAAVSALRNAIVPA 170
Query: 121 VHVAAE 126
E
Sbjct: 171 SREGGE 176
>gi|284161629|ref|YP_003400252.1| 3' exoribonuclease [Archaeoglobus profundus DSM 5631]
gi|284011626|gb|ADB57579.1| 3' exoribonuclease [Archaeoglobus profundus DSM 5631]
Length = 259
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A VK ++G P PD+G + + P A PTFE +E + EL+ +
Sbjct: 53 LGNTQVVAGVKMQIGEPFPDTPDQGIIITNAELVPLASPTFEPGPPDENAIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ +DL L + EG+ W ++ID + DGNL+DA A AAL NT +P+
Sbjct: 113 IRHSEA-----VDLKKLCIEEGEKVWIIFIDIWALDDDGNLMDASALAAIAALLNTTVPA 167
>gi|442763221|gb|JAA73769.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp43,
partial [Ixodes ricinus]
Length = 257
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 13/128 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
MG T V+ +KAEL PS +P G + VD CSP +P G + LS +
Sbjct: 55 MGCTTVVCGIKAELAEPSVSEPKCGFIVPNVDLPPLCSPMFKPGPPGPQAQVLSTMMLDV 114
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L + +DL L + E K+CW L +D + DGNL +A A AALS+
Sbjct: 115 LSN---------SNCVDLEKLCIEEAKLCWCLQLDLTCLDYDGNLAEACVLAATAALSSL 165
Query: 117 GIPSVHVA 124
+P V A
Sbjct: 166 TLPKVSTA 173
>gi|389852856|ref|YP_006355090.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. ST04]
gi|388250162|gb|AFK23015.1| putative exosome complex RNA-binding protein Rrp42 [Pyrococcus sp.
ST04]
Length = 266
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 5/122 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+ +K LG P P+ G + V+ P A PTFE +E + EL+ +
Sbjct: 44 LGSTQVLVGIKTTLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 103
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L +V+V GK+ ++ID V+ DGNL+DA+G A AAL N +P
Sbjct: 104 IRESRA-----LNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALMNARVPK 158
Query: 121 VH 122
V
Sbjct: 159 VR 160
>gi|196005309|ref|XP_002112521.1| hypothetical protein TRIADDRAFT_25085 [Trichoplax adhaerens]
gi|190584562|gb|EDV24631.1| hypothetical protein TRIADDRAFT_25085, partial [Trichoplax
adhaerens]
Length = 266
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 18/160 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T ++ +K E P PD G + VD CS P G + S L+
Sbjct: 49 IGNTTMLCGIKTEFAVPKLDSPDHGYIVPNVDLPPLCSYRFRPGPPGEQAQVCSQYLADI 108
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ C L I+L L +V+ K+ W +YID L + DGN+LDA A+ AAL +
Sbjct: 109 IKSCNL---------INLKDLCIVKEKLAWVIYIDLLCLDCDGNVLDASVIAMLAALRSA 159
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
P V + E ++P V S +E + + P+ +T
Sbjct: 160 KFPKVEIDEEV---DKPIV--SKDESFSLNVNDCPISSTF 194
>gi|410915784|ref|XP_003971367.1| PREDICTED: exosome complex component RRP43-like [Takifugu rubripes]
Length = 276
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 16/148 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T +I +KAEL P+ P KG + VD CS P G + S ++
Sbjct: 53 VGNTTIICGIKAELATPTVEAPGKGYIVPNVDLPPLCSSRFRPGPPGEPAQACSQFIADL 112
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ + I L V GK+CW LY D + + DGNL DA A+ AAL NT
Sbjct: 113 IE---------SSEIIQTDDLCVERGKLCWVLYCDLMCLDYDGNLRDACVIALLAALKNT 163
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQ 144
+P ++ E P VD+ L+
Sbjct: 164 QLPEAVISTET---HLPVVDLEKRHGLK 188
>gi|18313177|ref|NP_559844.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum aerophilum
str. IM2]
gi|29336869|sp|Q8ZVN0.1|ECX2_PYRAE RecName: Full=Probable exosome complex exonuclease 2
gi|18160691|gb|AAL64026.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
Length = 274
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 18/163 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSA---- 56
+G T V+A VK LG+P PD+G + + + P A P E +E + EL+
Sbjct: 59 LGKTHVVAGVKVGLGQPFPDAPDEGVLVVNAEVLPHASPYTEVGPPDEFAIELARVVDRG 118
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++HC +D L V EG + L+ID VI+ DGNL+D A AAL NT
Sbjct: 119 IRHC---------GYVDFKKLAV-EGGKAYVLWIDLYVINDDGNLIDVANLASVAALKNT 168
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
+P V V EA ++D +++ L D S P+ ++ K+
Sbjct: 169 QLPVV-VKDEAGV---VKLDRNNKAPLPVDISKAPIAVSVGKI 207
>gi|353236941|emb|CCA68925.1| hypothetical protein PIIN_02785 [Piriformospora indica DSM 11827]
Length = 333
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T+V+A+V+ E+ ++ D+G++ V CSP A P +++ +L+S LQ
Sbjct: 56 VGGTEVVAAVRLEV-EDIDLELDEGRMRCNVTCSPAAYPHLSANQQDDIQKDLTSLLQST 114
Query: 61 LLGGKSGAGAGIDLSS-----LVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
KS G +S L ++ G+ W +Y+D +V+S GN+ D L A +AA+ +
Sbjct: 115 FSPTKSHDSNGDSFTSVMSKSLTILPGRKAWTMYLDAVVLSDAGNVHDVLFLACRAAICD 174
Query: 116 TGIPSVH 122
T +P
Sbjct: 175 TRVPRTR 181
>gi|337283875|ref|YP_004623349.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus yayanosii
CH1]
gi|334899809|gb|AEH24077.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus yayanosii
CH1]
Length = 268
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 11/165 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +K +LG P P+ G + V+ P A PTFE +E + EL+ +
Sbjct: 51 LGNTQVLVGIKLDLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVVDRG 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K+ +DL LV+V GK+ ++ID V+ DGNL+DA+G A AAL N +P
Sbjct: 111 IRESKA-----LDLEKLVIVPGKLVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNAKMPK 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V +E+ EV I D E+ +P+ T K+ L+V
Sbjct: 166 VE-----YDEEKGEVTILD-EWEPLPVQKIPIPVTFAKIGGTLVV 204
>gi|345569202|gb|EGX52070.1| hypothetical protein AOL_s00043g460 [Arthrobotrys oligospora ATCC
24927]
Length = 298
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A + AE+ RP +P +G I + P A P+FE +L LS L+
Sbjct: 51 LGKTRVLARISAEIIRPRPDRPFEGTFTISTEMGPMASPSFEVGRPTDLDNTLSRLLEKS 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL SL +V + W L D +S DGNL+D A AL++ +P
Sbjct: 111 I-----RRSTALDLESLCIVTAQRVWSLRADLHFLSHDGNLIDTACIATITALAHFRLPV 165
Query: 121 VHVAAE 126
V V+ E
Sbjct: 166 VTVSGE 171
>gi|384499441|gb|EIE89932.1| hypothetical protein RO3G_14643 [Rhizopus delemar RA 99-880]
Length = 204
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V A+V AE+ RP A +P +G + + SP A PTFE E +S ++
Sbjct: 51 LGKTKVAANVTAEVVRPYADRPTEGILIFNTEISPMAAPTFESGSRSEEEVLISRVVEKA 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ ID L +V G+ W + +D + + DGNL+D A AL + P
Sbjct: 111 LRRSRA-----IDTEGLCIVSGEKVWQIRVDLMFLDHDGNLVDCACIAAITALLHFRRPD 165
Query: 121 VHVAAE 126
V V+ E
Sbjct: 166 VTVSGE 171
>gi|302757249|ref|XP_002962048.1| hypothetical protein SELMODRAFT_77552 [Selaginella moellendorffii]
gi|302775248|ref|XP_002971041.1| hypothetical protein SELMODRAFT_94605 [Selaginella moellendorffii]
gi|300161023|gb|EFJ27639.1| hypothetical protein SELMODRAFT_94605 [Selaginella moellendorffii]
gi|300170707|gb|EFJ37308.1| hypothetical protein SELMODRAFT_77552 [Selaginella moellendorffii]
Length = 377
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
G T V+A V A+LG P +P++G + I + SP A+P+FE GR G EL+ EL +
Sbjct: 51 QGETRVLAVVSAQLGTPYPDRPNEGSLVINTEFSPMADPSFEPGRPG-ELAVELGRVIDR 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
L ++ +D SL V+ GK W L ID ++ + GNL+D
Sbjct: 110 GLRESRA-----VDTESLCVLAGKAVWFLRIDIHILDNGGNLID 148
>gi|91772268|ref|YP_564960.1| exosome complex RNA-binding protein Rrp42 [Methanococcoides
burtonii DSM 6242]
gi|91711283|gb|ABE51210.1| Archaeal exosome complex exoribonuclease [Methanococcoides burtonii
DSM 6242]
Length = 259
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK ++G P A DKG + ++ +P A P FE E + E++ +
Sbjct: 52 LGDTQVLVGVKLQVGSPFADSADKGVIITSMELNPIASPNFEAGPPREKAIEMARVVDRG 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA IDL+ L + EG+ W ++ID V++ GNLLDA AAL IP
Sbjct: 112 IR--ESGA---IDLNKLCITEGEEVWIVFIDVHVLNDSGNLLDAASLGAIAALMTATIP 165
>gi|403171122|ref|XP_003330351.2| hypothetical protein PGTG_11688 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169041|gb|EFP85932.2| hypothetical protein PGTG_11688 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 281
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ ++K E +P + +P++G + V+ P P ++ + + L++ L+
Sbjct: 58 IGNTSVLCAIKFETAQPESAKPNQGFLVPNVELGPMCCPKYKPGPPPDQAQILATKLKDI 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ + + L SLV+ GK+ W +YID + +S+DGNL DA +A +AL + IP
Sbjct: 118 LI-----SSGFVPLDSLVIAPGKLVWVVYIDIVCLSNDGNLFDASLSATTSALKSARIPV 172
Query: 121 VHVAAEAAS 129
V E S
Sbjct: 173 VSFDHETQS 181
>gi|182889712|gb|AAI65543.1| Exosc8 protein [Danio rerio]
Length = 277
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 10/151 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAEL P + +KG + VD P F G GE+ A A Q
Sbjct: 53 IGNTTVICGIKAELAVPPSEAQNKGYLVPNVDLPPLCSSRFRAGPPGEQAQA----ASQ- 107
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + I+L L + + K+CW LY D + + DGNLLDA + AAL +P
Sbjct: 108 -FIADVIESSDLINLEELCIEKAKLCWVLYCDIMCLDYDGNLLDACITVLLAALKTAQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGV 150
V + E + EVDI + L+ + V
Sbjct: 167 EVTINKET---DLAEVDIEKKRRLKINRHPV 194
>gi|66267273|gb|AAH95236.1| Exosome component 8 [Danio rerio]
Length = 277
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 10/151 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAEL P + +KG + VD P F G GE+ A A Q
Sbjct: 53 IGNTTVICGIKAELAVPPSEAQNKGYLVPNVDLPPLCSSRFRAGPPGEQAQA----ASQ- 107
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + I+L L + + K+CW LY D + + DGNLLDA + AAL +P
Sbjct: 108 -FIADVIESSDLINLEELCIEKAKLCWVLYCDIMCLDYDGNLLDACITVLLAALKTAQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGV 150
V + E + EVDI + L+ + V
Sbjct: 167 EVTINKET---DLAEVDIEKKRRLKINRHPV 194
>gi|50838810|ref|NP_001002865.1| exosome complex exonuclease RRP43 [Danio rerio]
gi|49618917|gb|AAT68043.1| Opa-interacting protein 2 [Danio rerio]
Length = 277
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 10/151 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAEL P + +KG + VD P F G GE+ A A Q
Sbjct: 53 IGNTTVICGIKAELAVPPSEAQNKGYLVPNVDLPPLCSSRFRAGPPGEQAQA----ASQ- 107
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + I+L L + + K+CW LY D + + DGNLLDA + AAL +P
Sbjct: 108 -FIADVIESSDLINLEELCIEKAKLCWVLYCDIMCLDYDGNLLDACITVLLAALKTAQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGV 150
V + E + EVDI + L+ + V
Sbjct: 167 EVTINKET---DLAEVDIEKKRRLKINRHPV 194
>gi|147779414|emb|CAN74356.1| hypothetical protein VITISV_000912 [Vitis vinifera]
Length = 476
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V +L +P +P++G ++I+ + SP A+P+FE GR GE + EL +
Sbjct: 64 LGQTHVMGFVTGQLIQPYRDRPNEGTLSIYTEFSPMADPSFEAGRPGE-AAVELGRVIDR 122
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL V+ GK+ W + ID +I + GNL+DA A AAL P
Sbjct: 123 GLRESRA-----VDMESLCVLAGKLVWSIRIDLHIIDNGGNLIDAANIAALAALLTFRRP 177
Query: 120 SVHVAAEAASD---EQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
E + PEV + P PLIVH+L
Sbjct: 178 ECSFGGEDGQELIVHPPEV----------------------REPLPLIVHHL 207
>gi|198401795|gb|ACH87550.1| exosome component 9 [Platynereis dumerilii]
Length = 530
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A E+ P +P +G V + V+ SP A P FE + EL+ L+ C
Sbjct: 145 LGKTIVMAQTSCEVTTPKQTRPSEGNVFVNVELSPMAAPHFEAGRQSDAGVELTRILERC 204
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +D SL ++ G W + +D V++ +GNL+DA A ++L + P
Sbjct: 205 IKESRC-----VDTESLCIMSGVKVWTIRVDVHVLNHNGNLIDAASIAAISSLVHFRRPD 259
Query: 121 VHVAAE 126
V V+ E
Sbjct: 260 VSVSGE 265
>gi|146302863|ref|YP_001190179.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera sedula
DSM 5348]
gi|145701113|gb|ABP94255.1| ribosomal RNA-processing protein RRP42 [Metallosphaera sedula DSM
5348]
Length = 280
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK E P P++G + + + P A TFE +E + ELS +
Sbjct: 58 LGDTTVLAGVKVEEDEPYPDTPNQGNLVVNAELLPLAYETFEPGPPDENAIELSRVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DLS LV+ GK W +++D V+ GN+LDA A AAL + +P
Sbjct: 118 LRDSKA-----VDLSGLVIEPGKKVWTVWVDISVLDYGGNVLDACTIAAVAALYDAKLPK 172
Query: 121 V 121
V
Sbjct: 173 V 173
>gi|225460698|ref|XP_002270464.1| PREDICTED: exosome complex component rrp45-like [Vitis vinifera]
Length = 467
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V +L +P +P++G ++I+ + SP A+P+FE GR GE + EL +
Sbjct: 55 LGQTHVMGFVTGQLIQPYRDRPNEGTLSIYTEFSPMADPSFEAGRPGE-AAVELGRVIDR 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL V+ GK+ W + ID +I + GNL+DA A AAL P
Sbjct: 114 GLRESRA-----VDMESLCVLAGKLVWSIRIDLHIIDNGGNLIDAANIAALAALLTFRRP 168
Query: 120 SVHVAAEAASD---EQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
E + PEV + P PLIVH+L
Sbjct: 169 ECSFGGEDGQELIVHPPEV----------------------REPLPLIVHHL 198
>gi|332023404|gb|EGI63647.1| Exosome complex exonuclease RRP43 [Acromyrmex echinatior]
Length = 278
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T + +KAEL P A PD G + V+ SP F E + LS +
Sbjct: 49 LGDTTAVCGIKAELAAPKADTPDHGYIVPNVELSPLCSSKFRPGPPSEQAQVLSKFIDII 108
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L A +DL L + + K+ W LY D L ++ +G+++DA A+ AAL +P
Sbjct: 109 L-----SNSAALDLKDLCICKSKLVWVLYCDILCLNYNGSVIDACTGALMAALKTLTLPE 163
Query: 121 VHVAAEAA 128
V+ E A
Sbjct: 164 VNYTKETA 171
>gi|395324492|gb|EJF56931.1| ribosomal protein S5 domain 2-like protein [Dichomitus squalens
LYAD-421 SS1]
Length = 339
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 7/122 (5%)
Query: 2 GSTDVIASVKAELGR-PSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G TDV+A+VK E+ S D G+VA V CSP+A +EL +L+ LQ
Sbjct: 64 GGTDVLAAVKLEVEDVESGDGVDGGRVACSVTCSPSAYSHLSSNALDELQHDLTVILQQT 123
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ A + S+L ++ G+ W L ID +V++ GN++DAL A +AAL +T +P
Sbjct: 124 I------AHRSLHPSNLTIIPGRKAWLLNIDAVVLADSGNVVDALFMAARAALWDTKVPR 177
Query: 121 VH 122
Sbjct: 178 TR 179
>gi|320101498|ref|YP_004177090.1| ribosomal RNA-processing protein RRP42 [Desulfurococcus mucosus DSM
2162]
gi|319753850|gb|ADV65608.1| ribosomal RNA-processing protein RRP42 [Desulfurococcus mucosus DSM
2162]
Length = 286
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA VK ELG P +P++G + + + P A P+FE +E S E++ +
Sbjct: 58 LGGTQVIAGVKLELGEPFPDRPNEGVLQVHAEFVPLASPSFEPGPPDENSIEIARIIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L K+ + L +LVV GKV W ++ D ++ GN+ DA A AL+ IP
Sbjct: 118 LREPKA-----VKLDTLVVEPGKVVWVVFDDIYLVDHQGNITDASMMASMLALATARIP 171
>gi|147919674|ref|YP_686582.1| exosome complex RNA-binding protein Rrp42 [Methanocella arvoryzae
MRE50]
gi|121687882|sp|Q0W2Y7.1|ECX2_UNCMA RecName: Full=Probable exosome complex exonuclease 2
gi|110621978|emb|CAJ37256.1| putative exosome complex exonuclease 2 [Methanocella arvoryzae
MRE50]
Length = 260
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G + V+ VK + G P PD G + ++ P A PTFE E + EL+ +
Sbjct: 53 IGDSQVVVGVKIQPGEPFPDTPDSGVIITNLELVPLASPTFESGPPREDAIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA IDLS L + G+ W ++ID V+ DGNL+DA AAL T IP+
Sbjct: 113 VR--ESGA---IDLSKLCIESGQKVWMVFIDVHVLDHDGNLMDAASLGAIAALKATKIPN 167
>gi|400601572|gb|EJP69215.1| 3' exoribonuclease family protein [Beauveria bassiana ARSEF 2860]
Length = 297
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V AE+ P + +P G I + SP A P+FE E LS L+
Sbjct: 51 LGKTKVLAKVSAEVTVPFSDRPFDGVFTIASELSPMAAPSFEVNRPTETEVILSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D SL ++ G+ CW + +D V++ +GNLLD A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCLIAGQKCWSVRVDLHVLAHEGNLLDTSCLAVVAALRHFRKP 164
>gi|58259313|ref|XP_567069.1| Opa-interacting protein OIP2 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134107613|ref|XP_777691.1| hypothetical protein CNBA8110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260385|gb|EAL23044.1| hypothetical protein CNBA8110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223206|gb|AAW41250.1| Opa-interacting protein OIP2, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 297
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 7/120 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T ++ VKAE+G P A P +G V +D + P F+ G G+E + S+ L
Sbjct: 94 MGDTTMVCGVKAEVGEPDAEAPGEGFVVPNIDLPALSSPKFKPGPPGDE-AQTYSNWLYE 152
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L+ K+ I LSSL++ GK W LYID + I+ DGN DA A+ AAL NT +P
Sbjct: 153 LLVSSKT-----IPLSSLLIAPGKAAWVLYIDVVCINYDGNAFDAAVLAVMAALRNTRLP 207
>gi|327264085|ref|XP_003216847.1| PREDICTED: exosome complex exonuclease RRP43-like [Anolis
carolinensis]
Length = 277
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 22/160 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAE---LSSA 56
+G+T V+ +KAE P A +KG + VD P F G GEE A ++
Sbjct: 55 LGNTTVVCGIKAEFAAPLADSSNKGYIVPNVDLPPLCSSRFRPGPPGEEAQAASQFVADV 114
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+++ + K L +V+GK+ W LY D + + DGNLLDA A AAL N
Sbjct: 115 IENSQVVMKE---------DLCIVDGKIAWVLYCDIICLDYDGNLLDACMCAFLAALRNV 165
Query: 117 GIPSVHVA-----AEAASDEQPEVDISDE----EFLQFDT 147
+P+V + AE E+ + I E F+ FDT
Sbjct: 166 QLPAVTINEETGLAEVNLKEKIPLTIRKEPVATSFILFDT 205
>gi|83283987|gb|ABC01901.1| 3'-5'-exoribonuclease/RNA binding-like protein [Solanum tuberosum]
Length = 303
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST ++A++K E+ P+ PD+G +AI P P E+++ +S L
Sbjct: 67 IGSTTMLAAIKMEIMTPTVECPDEGSIAIEFHMPPICSPLVRPGRPAEVASVISKQLSDT 126
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L + IDL L +V GK W Y+D + +DG+L DA + AA S+ IP
Sbjct: 127 IL-----SSGMIDLKELCLVGGKAAWMAYLDIYCLDADGSLFDAALLSTVAAFSHLNIPV 181
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV-----PFPL 163
V + +E + + E+ +Q PV T K+ PF L
Sbjct: 182 VSL------NEDGRIVLVSEDNIQLKLEKQPVNTEKRKLKLNSPPFSL 223
>gi|52550027|gb|AAU83876.1| 3'-5' exoribonuclease [uncultured archaeon GZfos34H10]
Length = 260
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK E G P + P+KG + + P A P FE E S EL+ +
Sbjct: 53 IGDTVVLVGVKVEPGEPFSDTPNKGILMTNAELVPLASPEFESGPPNENSIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ G ++ IDL L + EG+ W L+ID + +DGNL+DA +L N IP
Sbjct: 113 IRGSET-----IDLEKLCIEEGEKVWMLFIDIHTLDNDGNLVDAAALGAITSLLNVAIP 166
>gi|307187131|gb|EFN72375.1| Exosome complex exonuclease RRP43 [Camponotus floridanus]
Length = 284
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T + +KAEL P A PD G + V+ SP P F E + LS +
Sbjct: 53 LGDTSAVCGIKAELATPKADIPDHGYIVPNVELSPLCSPKFRPGPPSEQAQVLSKLIDIV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + +DL L + + K+ W LY D L ++ +G+++DA A+ AAL +P
Sbjct: 113 LSNSR-----ALDLKDLCICKNKLVWVLYCDILCLNYNGSVIDACIGAMIAALKTLTLPE 167
Query: 121 VHVAAEA 127
++ +E
Sbjct: 168 INYNSET 174
>gi|15232342|ref|NP_191609.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|42572741|ref|NP_974466.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|334186154|ref|NP_001190143.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|7287998|emb|CAB81836.1| nucleolar autoantigen-like protein [Arabidopsis thaliana]
gi|28393589|gb|AAO42214.1| putative nucleolar autoantigen protein [Arabidopsis thaliana]
gi|28973593|gb|AAO64121.1| putative nucleolar autoantigen protein [Arabidopsis thaliana]
gi|113196170|gb|ABI31441.1| CER7 [Arabidopsis thaliana]
gi|332646547|gb|AEE80068.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|332646548|gb|AEE80069.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|332646549|gb|AEE80070.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
Length = 438
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 26/169 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V A+L +P +P++G ++IF + SP A+P+FE GR GE + EL +
Sbjct: 55 LGQTHVMGFVTAQLVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGES-AVELGRIIDR 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D SL V+ GK+ W + ID ++ + GNL+DA A AAL P
Sbjct: 114 GLRESRA-----VDTESLCVLAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRP 168
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V E + V + + P PLI+H+L
Sbjct: 169 DCTVGGENGQE-------------------VIIHPLEEREPLPLIIHHL 198
>gi|449442545|ref|XP_004139042.1| PREDICTED: exosome complex component RRP45-like [Cucumis sativus]
Length = 452
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 26/169 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V A+L +P +P++G ++I+ + SP A+P+FE GR GE + EL +
Sbjct: 55 LGQTHVMGFVTAQLVQPYRDRPNEGTLSIYTEFSPMADPSFEPGRPGES-AVELGRVIDR 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D SL VV GK W + +D ++ + GNL+DA A AALS
Sbjct: 114 GLRESRA-----VDTESLCVVSGKSVWAIRVDLHILDNGGNLVDAANVAALAALSTF--- 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
+PE +S + D V V + P PLI+H+L
Sbjct: 166 -----------RRPECSLSGD-----DGQEVIVHPPEVREPLPLIIHHL 198
>gi|449526860|ref|XP_004170431.1| PREDICTED: exosome complex component RRP45-like [Cucumis sativus]
Length = 454
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 26/169 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V A+L +P +P++G ++I+ + SP A+P+FE GR GE + EL +
Sbjct: 55 LGQTHVMGFVTAQLVQPYRDRPNEGTLSIYTEFSPMADPSFEPGRPGES-AVELGRVIDR 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D SL VV GK W + +D ++ + GNL+DA A AALS
Sbjct: 114 GLRESRA-----VDTESLCVVSGKSVWAIRVDLHILDNGGNLVDAANVAALAALSTF--- 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
+PE +S + D V V + P PLI+H+L
Sbjct: 166 -----------RRPECSLSGD-----DGQEVIVHPPEVREPLPLIIHHL 198
>gi|440473323|gb|ELQ42126.1| exosome complex exonuclease RRP45 [Magnaporthe oryzae Y34]
gi|440486517|gb|ELQ66377.1| exosome complex exonuclease RRP45 [Magnaporthe oryzae P131]
Length = 251
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G T ++A AE+ P +P G I + SP A P FE E LS L+
Sbjct: 51 FGKTRIVAKASAEVTIPYTDRPFDGIFNIVTELSPMASPAFEVNRPTETEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL +V G+ CW + +D S DGNL+DA A+ AAL + P
Sbjct: 111 I--RRSNA---LDTESLCLVAGQKCWSIRVDVHAESHDGNLIDASCLAVVAALRHFRKPD 165
Query: 121 VHVAAEAASDEQP 133
+ E + P
Sbjct: 166 TSIEGEVVTVYTP 178
>gi|269115421|gb|ACZ26287.1| putative exosome complex exonuclease [Mayetiola destructor]
Length = 273
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T VI +KAEL P+ +P G + +D +P P + + + L+ L
Sbjct: 53 LGNTTVICGIKAELTAPNVEEPQNGYLIPNIDLTPLCSPKYRSAASTDDAQVLTCHLNDI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K IDL L + + K+ W LY D I DG++LDA A+ AAL + +P
Sbjct: 113 IRDSK-----WIDLKQLCIAKEKLVWILYCDITCIDYDGSILDASVVALCAALRSLMLPK 167
Query: 121 VHVAAE 126
V E
Sbjct: 168 VQYDIE 173
>gi|297527571|ref|YP_003669595.1| 3' exoribonuclease [Staphylothermus hellenicus DSM 12710]
gi|297256487|gb|ADI32696.1| 3' exoribonuclease [Staphylothermus hellenicus DSM 12710]
Length = 285
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T VI VK E+G P + +P++G + + + P A PTFE +E + E + +
Sbjct: 58 LGNTFVITGVKLEIGTPYSDRPNEGVLQVHAEFVPLASPTFEPGPPDENAIETARVIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ I L LVV+ GK W ++ D +I GN++D + AL+ T IP
Sbjct: 118 LREPKA-----IRLEDLVVIPGKKVWLIFNDLYLIDHYGNIIDTGMLSTMLALNMTKIPR 172
Query: 121 V 121
+
Sbjct: 173 I 173
>gi|408404984|ref|YP_006862967.1| exosome complex exonuclease [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|408365580|gb|AFU59310.1| putative exosome complex exonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 274
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 5/130 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G ++VIA +K E G P +KG + + + PTA P E +E EL+ +
Sbjct: 58 LGDSEVIAGIKVETGEPFEGLEEKGALIVTAEVLPTASPYIEPGPPDEEVVELARVVDRG 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + IDL LV+V GK+ + +++D VI++DGNL DA A+ A+L +P
Sbjct: 118 VRESEM-----IDLDQLVLVPGKIVYTIFVDCSVINADGNLFDATSYAVVASLLTAKLPI 172
Query: 121 VHVAAEAASD 130
+ + + D
Sbjct: 173 LEMKDDKVVD 182
>gi|119719493|ref|YP_919988.1| exosome complex RNA-binding protein Rrp42 [Thermofilum pendens Hrk
5]
gi|119524613|gb|ABL77985.1| ribosomal RNA-processing protein RRP42 [Thermofilum pendens Hrk 5]
Length = 272
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+GST VIA VK +G P P++G + + SP A P FE G GEE EL+ +
Sbjct: 55 LGSTQVIAGVKLAIGTPFPDAPNEGVQIVNAELSPVASPFFEPGPPGEE-DIELARVVDR 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
K +DL+ L ++ CW LYID + DGNL+DA G A AL +T +P
Sbjct: 114 GFRSAKV-----VDLAKLSIIPSAKCWTLYIDIYPLDHDGNLVDAAGLAALLALLDTKLP 168
Query: 120 SVHV 123
V
Sbjct: 169 RTSV 172
>gi|449499646|ref|XP_002187964.2| PREDICTED: exosome complex component RRP45 [Taeniopygia guttata]
Length = 395
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 71/168 (42%), Gaps = 27/168 (16%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V EL P +P +G + ++ SP A P E EL L+ L+ C
Sbjct: 4 LGRTRVLAQVSCELVPPKPSRPTEGVLFFNLELSPMAAPGLEPGRQSELVVSLNRLLERC 63
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K I+ SL VV G+ W + +D +++ DGN+ DA A AL + P
Sbjct: 64 LRDSKC-----IETESLCVVAGEKVWQIRLDMHLLNHDGNITDAASIAGIVALCHFRRPD 118
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V V E V V T + P PL +H++
Sbjct: 119 VSVQGEE----------------------VTVYTAEERDPVPLSIHHM 144
>gi|297837509|ref|XP_002886636.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297332477|gb|EFH62895.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 302
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 25/179 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST ++A+++ E+ PS PD+G +A+ CSPT P +S LS
Sbjct: 67 IGSTTMLAAIRMEVMTPSTDSPDEGCIALEFHMPPICSPTVRPGRPADAAPVISKRLSDT 126
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + IDL L +V GK W Y+D + +DG L DA + AA SN
Sbjct: 127 IL---------SSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLSAVAAFSNL 177
Query: 117 GIPSV------HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPL--IVHN 167
IP V + A +Q I+++E + + + TL +PF L I+H
Sbjct: 178 QIPVVALNDNGRIVAITGGKDQDNASITEKEAVNKEKRKL----TLKNIPFSLTCILHK 232
>gi|157107418|ref|XP_001649768.1| exosome complex exonuclease rrp43 (ribosomal RNA processing protein
43 [Aedes aegypti]
gi|108884054|gb|EAT48279.1| AAEL000659-PA [Aedes aegypti]
Length = 274
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KAEL P ++PD G + ++ SP + P + E + S +L
Sbjct: 54 IGNTTVVCGIKAELAPPKPVEPDTGYLVPNIEISPLSSPKYRPGPPSEEAQVYSCSLADA 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L SG ++L L + + ++ W LY D + + DG + DA A+ AAL +P
Sbjct: 114 ILN--SGC---VNLKDLCITKEQLVWALYCDLVCLDHDGCIFDASVIALVAALHTLRLPP 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + +DE+ EVD D E + + +PV T+
Sbjct: 169 VKHNPD--TDER-EVD-EDAERIPLKLNSIPVTTSF 200
>gi|255582593|ref|XP_002532079.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
gi|223528261|gb|EEF30313.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
Length = 303
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 18/144 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST ++A++K E+ PS+ PD+G +AI CSP P +S +LS
Sbjct: 67 IGSTTMMAAIKMEVMTPSSESPDEGCIAIDFHMPPICSPLVRPGRPAEAAPVVSKQLSDT 126
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + A IDL L +V GK W Y+D + +DG+L DA + AA +N
Sbjct: 127 IM---------SSAMIDLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALFSAVAAFTNL 177
Query: 117 GIPSVHVAAEAASDEQPEVDISDE 140
IP V + +D+ V +SDE
Sbjct: 178 QIPIVSL-----NDDGKVVVVSDE 196
>gi|339244851|ref|XP_003378351.1| 3' exoribonuclease family, domain 1 [Trichinella spiralis]
gi|316972750|gb|EFV56404.1| 3' exoribonuclease family, domain 1 [Trichinella spiralis]
Length = 309
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 13/160 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKG----KVAIFVDCSPTAEPTFEGRGGEELSAELSSA 56
+G V ASV + G P PD+G K F+ E + + + E +S A
Sbjct: 53 IGEMSVTASVWLDFGTPLETAPDQGMIEFKSRFFISEESDEETSNDVKEAENISRIFKQA 112
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + D L +V G++CW+L +D L++ GNL D A+K AL NT
Sbjct: 113 YY---------SQSAFDRKQLCLVTGRLCWNLKVDLLIMGKGGNLFDVASIAVKMALHNT 163
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
IP V + ++ + + S VP++ T+
Sbjct: 164 IIPQVEASCPKNDTRTINIENDINKGFSLNISNVPMLVTI 203
>gi|297817356|ref|XP_002876561.1| hypothetical protein ARALYDRAFT_486522 [Arabidopsis lyrata subsp.
lyrata]
gi|297322399|gb|EFH52820.1| hypothetical protein ARALYDRAFT_486522 [Arabidopsis lyrata subsp.
lyrata]
Length = 438
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 26/169 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V A++ +P +P++G ++IF + SP A+P+FE GR GE + EL +
Sbjct: 55 LGQTHVMGFVTAQMVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGES-AVELGRIIDR 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D SL ++ GK+ W + ID ++ + GNL+DA A AAL P
Sbjct: 114 GLRESRA-----VDTESLCILAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRP 168
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V E EV I E + P PLI+H+L
Sbjct: 169 DCTVGGENGQ----EVIIHPPE---------------EREPLPLIIHHL 198
>gi|320591825|gb|EFX04264.1| exosome subunit rrp45 [Grosmannia clavigera kw1407]
Length = 294
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A AE+ P + +P G I + SP A P+FE E LS L+
Sbjct: 51 IGNTRVVAKATAEVTTPFSDRPFDGIFNIVTELSPMASPSFEAGRPSEAEVLLSRILEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN----- 115
+ +SGA +D SL + G CW + +D V+S +GNL+DA A+ AAL +
Sbjct: 111 I--RRSGA---LDTESLCLAAGNKCWSVRVDVHVMSHEGNLVDASCLAVVAALRHFRKAE 165
Query: 116 ----TGIPSVHVAAE 126
G+ +V+ AE
Sbjct: 166 TSIENGVLTVYTPAE 180
>gi|21536581|gb|AAM60913.1| nucleolar autoantigen-like protein [Arabidopsis thaliana]
Length = 307
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 26/169 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A V A+L +P +P +G +IF + SP A+P+FE G GE + EL +
Sbjct: 55 LGQTHVMAFVTAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGES-AVELGRIIDR 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D SL V+ GK+ W + ID ++ + GNL+DA A AAL P
Sbjct: 114 ALRESRA-----VDTESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRP 168
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V + + D V I E + P PLI+H+L
Sbjct: 169 DCTVGGDNSQD----VIIHPPE---------------EREPLPLIIHHL 198
>gi|336372937|gb|EGO01276.1| hypothetical protein SERLA73DRAFT_179422 [Serpula lacrymans var.
lacrymans S7.3]
gi|336385769|gb|EGO26916.1| hypothetical protein SERLADRAFT_464533 [Serpula lacrymans var.
lacrymans S7.9]
Length = 288
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+ VKAE+ P PD+G + +D F+ E + LS L
Sbjct: 71 MGDTTVVCGVKAEIAEPELDHPDEGYLVPNLDLPAMCSSKFKPGPPTEEAQVLSDRLNQA 130
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ SG I LSSL + G+ W LY+D I+ GN DA A+ AAL NT IP
Sbjct: 131 LV--MSGV---ISLSSLCIHSGRSVWTLYVDATCINYAGNAFDATLLAMVAALKNTRIPQ 185
Query: 121 VHVAAEA 127
E+
Sbjct: 186 ASFDEES 192
>gi|18399822|ref|NP_566441.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|79313209|ref|NP_001030684.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|334185300|ref|NP_001189874.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|15795131|dbj|BAB02509.1| nucleolar autoantigen-like protein [Arabidopsis thaliana]
gi|27765042|gb|AAO23642.1| At3g12990 [Arabidopsis thaliana]
gi|110742714|dbj|BAE99268.1| hypothetical protein [Arabidopsis thaliana]
gi|332641750|gb|AEE75271.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|332641751|gb|AEE75272.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|332641752|gb|AEE75273.1| ribonuclease PH45A [Arabidopsis thaliana]
Length = 307
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 26/169 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A V A+L +P +P +G +IF + SP A+P+FE G GE + EL +
Sbjct: 55 LGQTHVMAFVTAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGES-AVELGRIIDR 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D SL V+ GK+ W + ID ++ + GNL+DA A AAL P
Sbjct: 114 ALRESRA-----VDTESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRP 168
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V + + D V I E + P PLI+H+L
Sbjct: 169 DCTVGGDNSQD----VIIHPPE---------------EREPLPLIIHHL 198
>gi|255580609|ref|XP_002531128.1| exosome complex exonuclease rrp45, putative [Ricinus communis]
gi|223529292|gb|EEF31262.1| exosome complex exonuclease rrp45, putative [Ricinus communis]
Length = 463
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 26/169 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V ++L +P +P++G ++IF + SP A+P+FE GR GE + EL +
Sbjct: 55 LGQTHVMGFVTSQLVQPYRDRPNEGSLSIFSEFSPMADPSFEPGRPGES-AVELGRIIDR 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D SL V+ GK+ W + ID ++ + GNL+DA A AAL P
Sbjct: 114 GLRESRA-----VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALAALLTFRRP 168
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
+ E D V V K P PLIVH+L
Sbjct: 169 ECTLGGE-------------------DGQQVIVHPPEVKEPLPLIVHHL 198
>gi|321250323|ref|XP_003191768.1| ribosomal RNA-processing protein 43 [Cryptococcus gattii WM276]
gi|317458235|gb|ADV19981.1| Ribosomal RNA-processing protein 43, putative [Cryptococcus gattii
WM276]
Length = 303
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 65/120 (54%), Gaps = 7/120 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T ++ VKAE+G P P +G V +D + P F+ G G+E + S+ L
Sbjct: 93 MGDTTMVCGVKAEIGEPDTETPGEGFVVPNIDLPALSSPRFKPGPPGDE-AQTYSNWLNE 151
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L+ K+ I LSSL++ GK W LYID + I+ DGN DA A+ AAL NT +P
Sbjct: 152 LLVSSKT-----IPLSSLLIAPGKAAWVLYIDVVCINYDGNAFDAAVLAVMAALRNTRLP 206
>gi|170292235|pdb|2PNZ|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Udp And Gmp
gi|170292237|pdb|2PO0|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Adp In Double Conformation
gi|170292240|pdb|2PO1|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With A Single Stranded 10-Mer Poly(A) Rna
gi|170292242|pdb|2PO2|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Cdp
Length = 277
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 20/163 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+ +K LG P P+ G + V+ P A PTFE +E + EL+ +
Sbjct: 57 LGSTQVLVGIKTSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 116
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K+ ++L +V+V GK+ ++ID V+ DGNL+DA+G A AAL N +P
Sbjct: 117 IRESKA-----LNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPK 171
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPL 163
V E EV+ DE T +PV K+P P+
Sbjct: 172 VRYNEETG-----EVETLDE------TEPLPV----EKIPVPV 199
>gi|14520827|ref|NP_126302.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus abyssi GE5]
gi|29337009|sp|Q9V118.1|ECX2_PYRAB RecName: Full=Probable exosome complex exonuclease 2
gi|5458043|emb|CAB49533.1| RNAse PH-related exoribonuclease [Pyrococcus abyssi GE5]
gi|380741369|tpe|CCE70003.1| TPA: exosome complex RNA-binding protein Rrp42 [Pyrococcus abyssi
GE5]
Length = 274
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 20/163 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+ +K LG P P+ G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGSTQVLVGIKTSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K+ ++L +V+V GK+ ++ID V+ DGNL+DA+G A AAL N +P
Sbjct: 114 IRESKA-----LNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPL 163
V E EV+ DE T +PV K+P P+
Sbjct: 169 VRYNEETG-----EVETLDE------TEPLPV----EKIPVPV 196
>gi|254168333|ref|ZP_04875178.1| 3' exoribonuclease family, domain 1 protein [Aciduliprofundum
boonei T469]
gi|197622614|gb|EDY35184.1| 3' exoribonuclease family, domain 1 protein [Aciduliprofundum
boonei T469]
Length = 226
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 7/121 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T V+ VK E G P P+ G + + +P A PTFE G GEE + EL+ +
Sbjct: 58 LGNTRVLVGVKIEPGTPFPDTPNMGILTTNAELAPLASPTFEPGPPGEE-AIELARVVDR 116
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ G + IDL LV+ EG+ W ++ID V+ DGNL DA G AAL+N +P
Sbjct: 117 GIREGHA-----IDLEKLVIEEGEKVWIVFIDIHVLDYDGNLFDAAGYGALAALTNATVP 171
Query: 120 S 120
+
Sbjct: 172 A 172
>gi|149635838|ref|XP_001511768.1| PREDICTED: exosome complex component RRP43-like [Ornithorhynchus
anatinus]
Length = 276
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P P+KG V VD P F G GEE A+++S +
Sbjct: 53 LGNTTVICGVKAEFTAPPGDAPNKGYVVPNVDLPPLCSSRFRPGPPGEE--AQVASQFIN 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
++ I L + +GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 111 DVIENSQL----IAKEDLCISKGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAE 126
+V + E
Sbjct: 167 AVVINEE 173
>gi|56118510|ref|NP_001007919.1| exosome component 8 [Xenopus (Silurana) tropicalis]
gi|51513372|gb|AAH80360.1| exosc8 protein [Xenopus (Silurana) tropicalis]
gi|89269528|emb|CAJ82996.1| exosome component 8 [Xenopus (Silurana) tropicalis]
Length = 276
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+ V+ VKAE P A P+KG V VD +P F G GEE A+++S
Sbjct: 53 LGNCTVLCGVKAEFTAPPADAPNKGYVVPNVDLTPLCSSQFRPGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + L + GK+ W LY D + + DGNLLD A+ AAL N +P
Sbjct: 109 --IADVIDNSQMLLKEDLCIAHGKLAWVLYCDLICLDYDGNLLDTCMCALVAALQNVRLP 166
Query: 120 SVHVAAE 126
SV + E
Sbjct: 167 SVKINEE 173
>gi|389632461|ref|XP_003713883.1| exosome complex exonuclease RRP45 [Magnaporthe oryzae 70-15]
gi|351646216|gb|EHA54076.1| exosome complex exonuclease RRP45 [Magnaporthe oryzae 70-15]
Length = 293
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G T ++A AE+ P +P G I + SP A P FE E LS L+
Sbjct: 51 FGKTRIVAKASAEVTIPYTDRPFDGIFNIVTELSPMASPAFEVNRPTETEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL +V G+ CW + +D S DGNL+DA A+ AAL + P
Sbjct: 111 I--RRSNA---LDTESLCLVAGQKCWSIRVDVHAESHDGNLIDASCLAVVAALRHFRKPD 165
Query: 121 VHVAAEAASDEQP 133
+ E + P
Sbjct: 166 TSIEGEVVTVYTP 178
>gi|348667912|gb|EGZ07737.1| hypothetical protein PHYSODRAFT_529521 [Phytophthora sojae]
Length = 283
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ ++K +G P+ PD+G++A+ V SP F E S +SS L
Sbjct: 66 LGKTSVLTAIKLAVGTPAVATPDQGEIAVQVHLSPLCSNRFSVGRPSEESQSISSQLTRI 125
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
++G + +++ SL +V+G+ W L +D + DGN+LDA +I AAL +P+
Sbjct: 126 IVGSRV-----VEMESLSIVKGQSAWKLMVDVYCVDHDGNVLDAALTSIMAALKTLKLPA 180
Query: 121 VHV 123
V
Sbjct: 181 TSV 183
>gi|358396358|gb|EHK45739.1| hypothetical protein TRIATDRAFT_140053 [Trichoderma atroviride IMI
206040]
Length = 293
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V AE+ P + +P G I + P P+FE E L+ L+
Sbjct: 51 LGKTRVLAKVSAEVTVPFSDRPFDGIFQITSELGPMVAPSFEVNRPTETEVLLARLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL ++ G+ CW + +D ++S+DGNL+D+ A+ AAL + P
Sbjct: 111 V--RRSGA---LDTESLCLIAGQKCWSVRVDLHILSADGNLIDSSCLAVVAALRHFRRPD 165
Query: 121 VHVAAE 126
+ E
Sbjct: 166 TSIEGE 171
>gi|296423319|ref|XP_002841202.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637437|emb|CAZ85393.1| unnamed protein product [Tuber melanosporum]
Length = 293
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEE---LSAELSSA 56
+G T V+A V AE+ +P +P G I + P A P FE GR E+ LS + A
Sbjct: 51 LGKTRVLARVSAEVVKPFTDRPFDGIFTITTELGPMASPAFEPGRQTEQEVLLSRLIEKA 110
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ +S A +D SL +V G+ CW + D +S DG L+DA A+ AAL +
Sbjct: 111 IR------RSNA---LDTESLCIVAGQKCWQIRADVHFLSHDGALVDASCIAVVAALQHF 161
Query: 117 GIPSVHVAAEAAS 129
P V V E +
Sbjct: 162 RRPDVSVEGEKVT 174
>gi|346473845|gb|AEO36767.1| hypothetical protein [Amblyomma maculatum]
Length = 223
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V+ VKAEL P+ P +G + VD P P F+ G GE+ A++ S L
Sbjct: 1 MGCTTVVCGVKAELAEPAVAMPKQGYIVPNVDLLPLCSPMFKPGPPGEQ--AQVLSKLML 58
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+L +DL L + EGK+ W L +D + DGN+ +A A AAL + +P
Sbjct: 59 DILTSSDS----LDLEKLCIEEGKLVWSLNVDLTCLDYDGNVAEACILAATAALCSLTLP 114
Query: 120 SV 121
V
Sbjct: 115 KV 116
>gi|282165296|ref|YP_003357681.1| probable exosome complex exonuclease 2 [Methanocella paludicola
SANAE]
gi|282157610|dbj|BAI62698.1| probable exosome complex exonuclease 2 [Methanocella paludicola
SANAE]
Length = 259
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G + V+ VK + G P PDKG + ++ P A PTFE E + EL+ +
Sbjct: 53 IGDSRVVVGVKIQPGEPFMDTPDKGVIITNLELVPLASPTFETGPPREDAIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ IDLS L + G+ W ++ID V+ DGNL+DA AAL + IP+
Sbjct: 113 VRESEA-----IDLSKLCIESGQKVWMVFIDVHVLDHDGNLMDAASMGAIAALMSAKIPN 167
>gi|302830011|ref|XP_002946572.1| hypothetical protein VOLCADRAFT_86657 [Volvox carteri f.
nagariensis]
gi|300268318|gb|EFJ52499.1| hypothetical protein VOLCADRAFT_86657 [Volvox carteri f.
nagariensis]
Length = 311
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 6/127 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V+ E+ RP P +G++A+ V+ +P + + GR + +SA ++ L
Sbjct: 66 IGRTTVLGGVRLEIIRPDETAPSQGQLALNVELAPFSSQDYRPGRQPDHVSA-VTEKLTS 124
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
LL G G + LSSL + EGK W +D V+ +DG +LD A AAL NT IP
Sbjct: 125 ALLTG----GDAVQLSSLCIAEGKAAWRASLDLYVLDADGCVLDTALLAATAALRNTRIP 180
Query: 120 SVHVAAE 126
+V E
Sbjct: 181 AVRSTRE 187
>gi|126465759|ref|YP_001040868.1| exosome complex RNA-binding protein Rrp42 [Staphylothermus marinus
F1]
gi|126014582|gb|ABN69960.1| ribosomal RNA-processing protein RRP42 [Staphylothermus marinus F1]
Length = 285
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T VI VK E+G P + +P++G + + + P A PTFE +E + E + +
Sbjct: 58 LGNTFVITGVKLEIGTPYSDRPNEGVLQVHAEFVPLASPTFEPGPPDENAIETARVIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ I L LVV+ GK W ++ D +I GN++D + AL+ T IP
Sbjct: 118 LREPRA-----IRLEDLVVIPGKKVWLIFNDLYLIDHYGNIVDTGMLSTMLALNMTKIPR 172
Query: 121 V 121
+
Sbjct: 173 I 173
>gi|351703822|gb|EHB06741.1| Exosome complex exonuclease RRP45 [Heterocephalus glaber]
Length = 462
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVAPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDIHLLNHDGNIIDAASIAAVVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V E + PE
Sbjct: 165 VSVQGEEVTLYTPE 178
>gi|289595859|ref|YP_003482555.1| 3' exoribonuclease [Aciduliprofundum boonei T469]
gi|289533646|gb|ADD07993.1| 3' exoribonuclease [Aciduliprofundum boonei T469]
Length = 270
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 7/121 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T V+ VK E G P P+ G + + +P A PTFE G GEE + EL+ +
Sbjct: 58 LGNTRVLVGVKIEPGTPFPDTPNMGILTTNAELAPLASPTFEPGPPGEE-AIELARVVDR 116
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ G + IDL LV+ EG+ W ++ID V+ DGNL DA G AAL+N +P
Sbjct: 117 GIREGHA-----IDLEKLVIEEGEKVWIVFIDIHVLDYDGNLFDAAGYGALAALTNATVP 171
Query: 120 S 120
+
Sbjct: 172 A 172
>gi|449549379|gb|EMD40344.1| hypothetical protein CERSUDRAFT_148276 [Ceriporiopsis subvermispora
B]
Length = 291
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ VKAE+ P P+ G + +D P F+ E + +S L
Sbjct: 73 LGDTTIVCGVKAEIAEPELDSPEAGFIVPNLDLPAICSPKFKPGPPTEEAQVISDRLNEV 132
Query: 61 LLGGKSGAGAGI-DLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L+ AGI SSL + GK W LYID I+ DGN DA A+ AAL NT +P
Sbjct: 133 LVT------AGIVSPSSLCIQPGKAAWVLYIDATCINYDGNAFDATLLAMVAALKNTRLP 186
Query: 120 SVHVAAEA 127
EA
Sbjct: 187 KARFDEEA 194
>gi|156551918|ref|XP_001607202.1| PREDICTED: exosome complex component RRP45-like [Nasonia
vitripennis]
Length = 412
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T A V ++ +P A +P++G + + V+ +P A FE E +A ++ L+
Sbjct: 50 LGQTRAAAQVSCDIQQPKASRPNEGMLHVNVELNPLAAQHFESGRQSEAAALINRQLEKS 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + +DL SL +V K W++ +D +I+ DGNL+D A AAL + P
Sbjct: 110 LKESRC-----VDLESLCIVADKKVWNIRVDVSIINHDGNLIDCASIAALAALMHFHRPD 164
Query: 121 V 121
V
Sbjct: 165 V 165
>gi|347442048|emb|CCD34969.1| similar to exosome complex endonuclease 2/ribosomal RNA processing
protein [Botryotinia fuckeliana]
Length = 294
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ ++ AE+ P + G I + SP A P FE E LS L+
Sbjct: 51 LGKTRVLVNITAEVTSPFPDRLFDGIFTITTELSPMASPAFETNRPTEQEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L A +D SL ++ G+ CW + D ++S DGNL+DA AI AAL + P
Sbjct: 111 L-----RRSAALDTESLCLIAGQKCWSVRADVHILSHDGNLIDASCIAIIAALQHFRKPD 165
Query: 121 VHVAAEAAS 129
E +
Sbjct: 166 TSTEGETVT 174
>gi|358381167|gb|EHK18843.1| hypothetical protein TRIVIDRAFT_193923 [Trichoderma virens Gv29-8]
Length = 293
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V AE+ P +P G I + P P+FE E L+ L+
Sbjct: 51 LGKTRVLAKVSAEVTVPFPDRPFDGIFQITSELGPMVAPSFEVNRPTETEVLLARLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ CW + +D V+S+DGNL+D+ A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCLVAGQKCWSVRVDLHVLSADGNLIDSSCFAVVAALRHFRKPD 165
Query: 121 VHVAAE 126
+ E
Sbjct: 166 TSMEGE 171
>gi|403418833|emb|CCM05533.1| predicted protein [Fibroporia radiculosa]
Length = 286
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ VKAE+ P P G + +D P F+ E + LS L
Sbjct: 69 LGDTTIVCGVKAEIAEPELDSPGDGFLVPNLDLPAICSPKFKPGPPTEEAQVLSDRLNEA 128
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ A + SSL + GK W LY+D I+ DGN DA A+ AAL NT +P
Sbjct: 129 LI-----ASGILPTSSLCIARGKAVWVLYVDATCINYDGNAFDATLLAMVAALKNTQLP- 182
Query: 121 VHVAAEAASDEQ 132
EA DE+
Sbjct: 183 -----EATYDEE 189
>gi|149411987|ref|XP_001513016.1| PREDICTED: exosome complex component RRP45-like [Ornithorhynchus
anatinus]
Length = 439
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVAPKLNRATEGILFFNLELSQMASPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K +D SL V+ G+ W + +D V++ DGN+LDA A AL + P
Sbjct: 110 LRNSKC-----VDTESLCVIAGEKVWQIRVDLHVLNHDGNILDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEITLYTPE 178
>gi|346319692|gb|EGX89293.1| 3' exoribonuclease [Cordyceps militaris CM01]
Length = 297
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V AE+ P + +P G I + SP P+FE E LS L+
Sbjct: 51 VGKTKVLAKVSAEVTVPFSDRPFDGVFTIASELSPMVAPSFEVNRPTETEVVLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D SL +V + CW + D V++ DGNLLDA A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCLVAAQKCWSIRADLHVLAHDGNLLDASCLAVIAALRHFRKP 164
>gi|435852007|ref|YP_007313593.1| RNase PH-related exoribonuclease [Methanomethylovorans hollandica
DSM 15978]
gi|433662637|gb|AGB50063.1| RNase PH-related exoribonuclease [Methanomethylovorans hollandica
DSM 15978]
Length = 260
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK ++G P PD+G + ++ +P A P FE E + E++
Sbjct: 53 IGDTQVLVGVKLQVGAPFPDSPDEGVIITNLEMNPLASPDFEAGPPREGAIEMARVTDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA IDL L + EG+ W ++ID V++ DGNL DA AAL + IPS
Sbjct: 113 IR--ESGA---IDLKELCITEGEEVWIVFIDVHVLNDDGNLQDASCLGAIAALMTSKIPS 167
>gi|449020127|dbj|BAM83529.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 324
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 24/178 (13%)
Query: 3 STDVIASVKAELGR---PSAMQPD--KGKVAIFVDCSPTAEPTFEGRGGEELSAELSSAL 57
+ DV+ + EL + P+ + D +G +A V+ A P F+GR E L AEL S L
Sbjct: 56 TNDVLVGINLELRQYNLPAHAEDDAKRGSIAFSVEFCGVASPEFQGRSTEVLEAELVSFL 115
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKV----------CWDLYIDGLVI-SSDGNLLDALG 106
+ A + L+ L E ++ CWD+Y+D LV+ +S GN+LDA+
Sbjct: 116 D------TAYAASPEFLADLFCREQRLASDPGTLRVCCWDVYVDVLVLGASGGNILDAVT 169
Query: 107 AAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLI 164
A++AAL+ T +PSV+ ++ S E+D E + S P+ + +P PL+
Sbjct: 170 YAVRAALATTVVPSVY-WQDSESGGSWELDDRAEYCALLNASNAPLSASGAFIP-PLV 225
>gi|268573886|ref|XP_002641920.1| C. briggsae CBR-EXOS-9 protein [Caenorhabditis briggsae]
Length = 434
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T VIA+V A++ PS+M+P KG + I VD SP A + E EL L+
Sbjct: 50 IGNTKVIAAVSAQIAEPSSMRPHKGVIIIDVDLSPMANVSNEHDRLGSKGMELIRLLELI 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + ID+ SL + GK W + +D ++ DG+LLD A AL + P+
Sbjct: 110 IRDSRC-----IDVESLCIRAGKEIWKVRVDVRILDEDGSLLDCACLAAITALQHFKRPN 164
Query: 121 V 121
V
Sbjct: 165 V 165
>gi|224002617|ref|XP_002290980.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972756|gb|EED91087.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 222
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS--------------PTAEPTFEGRGGE 47
+TDV+ SVKA+L PS+ +P++G V + VD S ++ R
Sbjct: 70 STTDVLCSVKADLVHPSSSKPNEGVVELNVDLSLCGGSVSGFMGGGSHSSSAGKRKRLQR 129
Query: 48 ELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGA 107
E +++SS LQ +L ++ LVV GK W L ID V+ DG +LDA
Sbjct: 130 EEESQISSLLQRLVLPH------AVNYEKLVVWPGKYVWRLSIDVCVLRCDGCVLDAASM 183
Query: 108 AIKAALSNTGIPSVH 122
++ AL NT +P V
Sbjct: 184 GVREALQNTMLPVVQ 198
>gi|387915884|gb|AFK11551.1| exosome complex component RRP43 [Callorhinchus milii]
Length = 291
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T V+ +K E P+ P+KG V VD CS P G + S ++
Sbjct: 53 LGNTTVVCGIKMEFAVPTVDAPNKGYVVPNVDLPPLCSSRFRPGPPGEQAQAASQFIADV 112
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+++ K L + +GK+ W +Y D + + DGNLLDA A+ AAL N
Sbjct: 113 IENSQFLQKE---------DLCIEKGKLVWVVYCDMMCLDYDGNLLDACIIALLAALKNV 163
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
+P V ++ E EVD++ + Q + PV T+
Sbjct: 164 QLPPVSISVETG---LAEVDMNQKN--QLNIRKHPVATSF 198
>gi|378733642|gb|EHY60101.1| exoribonuclease like to ribonuclease PH [Exophiala dermatitidis
NIH/UT8656]
Length = 291
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 36/172 (20%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEE---LSAELSSA 56
+G T V + AE+ +P + +G I + SP A P +E GR E+ LS L A
Sbjct: 51 LGKTRVHVQISAEVTKPLEERKFEGIFTIVTELSPIASPAYEVGRQTEQEVILSRILEKA 110
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ +S A +D SL ++ G CW + D V+ SDG L+DA AI AAL +
Sbjct: 111 IR------RSNA---LDTESLCIIAGAKCWSVRADVHVLDSDGGLIDASCIAIVAALRHF 161
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPL-IVHN 167
P V V D V + T +VP PL ++HN
Sbjct: 162 RRPDVSV----------------------DGENVTIYTMAERVPVPLSLMHN 191
>gi|449271151|gb|EMC81699.1| Exosome complex exonuclease RRP45, partial [Columba livia]
Length = 389
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGK 65
V+A V EL P +P +G + + SP A P FE EL +++ ++ CL K
Sbjct: 2 VLAQVSCELVPPKPNRPAEGILFFNFELSPMAAPGFEPGRQPELLVKVNRLIERCLRNSK 61
Query: 66 SGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAA 125
+D SL VV G+ W + +D +++ DGN++DA A AL + P V V
Sbjct: 62 C-----VDTESLCVVAGEKVWQIRLDLHLLNHDGNIIDAASIAGIVALCHFRRPDVSVQG 116
Query: 126 EAASDEQPE 134
E + PE
Sbjct: 117 EEVTVYTPE 125
>gi|296195656|ref|XP_002745482.1| PREDICTED: exosome complex component RRP45 [Callithrix jacchus]
Length = 440
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVAPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASVAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|443926780|gb|ELU45348.1| Opa-interacting protein OIP2 [Rhizoctonia solani AG-1 IA]
Length = 294
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G + ++ VKAE+ P +P +G + +D CSP +P + LS +++
Sbjct: 67 IGDSTIVCGVKAEIAEPDLERPSEGFIVPNLDLPAICSPKFKPGPPAEEAQMLSEKIT-- 124
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+L + + ID +L + GK W +Y+D + I+ DGN+LDA A+ AAL N
Sbjct: 125 ----ILTKLTYSSNAIDPKTLCIHPGKAAWVIYVDAVCINYDGNILDATMLAVVAALQNG 180
Query: 117 GIPS 120
+P+
Sbjct: 181 ILPA 184
>gi|223945461|gb|ACN26814.1| unknown [Zea mays]
gi|413921676|gb|AFW61608.1| exosome complex exonuclease RRP43 [Zea mays]
Length = 306
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ASVK E+ PSA PD+G V++ P P E++ +S AL+
Sbjct: 70 VGDTAMLASVKLEVMSPSAEYPDEGSVSVEFHMPPICSPLVRPGRSAEVAPVISKALEDV 129
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ + ++L L ++ GK W Y+D +++DG+L DA + AA ++ IP
Sbjct: 130 LMSSRM-----LNLKDLCLITGKASWLAYLDIYCLNADGSLFDAALISAVAAFTHLEIPL 184
Query: 121 VHV 123
V V
Sbjct: 185 VSV 187
>gi|254168306|ref|ZP_04875152.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
gi|197622815|gb|EDY35384.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
Length = 270
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 7/121 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T V+ VK E G P P+ G + + +P A PTFE G GEE + EL+ +
Sbjct: 58 LGNTRVLVGVKIEPGTPFPDTPNMGILTTNAELAPLASPTFEPGPPGEE-AIELARVVDR 116
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ G + IDL LV+ EG+ W ++ID V+ DGNL DA G AAL+N +P
Sbjct: 117 GIREGHA-----IDLEKLVIEEGEKVWIVFIDIHVLDYDGNLFDAAGYGALAALTNAIVP 171
Query: 120 S 120
+
Sbjct: 172 A 172
>gi|326918964|ref|XP_003205754.1| PREDICTED: exosome complex exonuclease RRP45-like, partial
[Meleagris gallopavo]
Length = 403
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ SP A P FE EL +++ ++ C
Sbjct: 13 LGKTRVLGQVSCELVPPKPNRATEGILFCNLELSPMAAPGFEPGRQSELLVKVNRLIERC 72
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 73 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAGIVALCHFRRPD 127
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 128 VSVQGKEVTVYSPE 141
>gi|405968426|gb|EKC33499.1| Exosome complex exonuclease RRP43 [Crassostrea gigas]
Length = 300
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KAE +P +P G + V+ SP P F R G + E + L
Sbjct: 79 IGNTTVMCGIKAECAKPKTEEPAHGFIVPNVELSPMCSPQF--RPG--MPGEQARVLSQF 134
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L + ID+ L + G++ W LY D + + GN+ DA ++ AAL+NT +P+
Sbjct: 135 MLEVMKNSNC-IDVKKLCIEPGRLVWTLYCDIVCLDYGGNVTDACVLSLLAALNNTVLPN 193
Query: 121 V 121
V
Sbjct: 194 V 194
>gi|322709290|gb|EFZ00866.1| 3' exoribonuclease [Metarhizium anisopliae ARSEF 23]
Length = 288
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGK 65
++A V AE+ P +P G I + SP A P+FE E LS L+ + +
Sbjct: 51 IVARVSAEVTVPFTDRPFDGIFTISSELSPMAAPSFEVNRPTEQEVLLSRILEKTI--RR 108
Query: 66 SGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAA 125
SGA +D SL +V G+ CW + D V+S DGNLLD A+ AAL + P +
Sbjct: 109 SGA---LDTESLCLVAGQKCWSVRADVHVLSHDGNLLDVACFAVVAALRHFRKPETTMDG 165
Query: 126 EAASDEQP 133
E + P
Sbjct: 166 ETLTVYTP 173
>gi|409079432|gb|EKM79793.1| hypothetical protein AGABI1DRAFT_38968 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 352
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG + ++ VKAE+ P PD+G + VD P F+ + + LS L
Sbjct: 79 MGGSTIVCGVKAEIAEPDLENPDEGFLVPNVDLPAMCHPKFKPGPPSDEAQVLSERLFET 138
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L + SLVV GK W LY+D I+ DGN+ DA A+ +AL NT +P
Sbjct: 139 LTSSNF-----MSPKSLVVHPGKFVWTLYVDATCINYDGNVFDATLIAMVSALLNTRLP 192
>gi|47227071|emb|CAG00433.1| unnamed protein product [Tetraodon nigroviridis]
Length = 275
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 10/146 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T +I +KAEL P+ P KG + VD P F G GE+ A+ S
Sbjct: 53 VGNTTIICGIKAELANPTVEAPGKGYIVPNVDLPPLCSSRFRPGPPGEQ--AQACSQFIA 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L+ + I L + GK+CW LY D + + DGNL DA A+ AAL T +P
Sbjct: 111 DLIE----SSEIIQPEDLCIERGKLCWVLYCDLMCLDYDGNLRDACVIALLAALKITQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQF 145
++ E P VD+ + L
Sbjct: 167 EAIISTETC---LPVVDLEKKRGLNI 189
>gi|77797833|ref|NP_001030000.1| exosome complex exonuclease RRP45 [Gallus gallus]
gi|50593178|gb|AAT79383.1| polymyositis/scleroderma autoantigen 1 [Gallus gallus]
Length = 440
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ SP A P FE EL +++ ++ C
Sbjct: 50 LGKTRVLGQVSCELVPPKPNRATEGILFCNLELSPMAAPGFEPGRQSELLVKVNRLIERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIVDAASIAGIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGKEVTVYSPE 178
>gi|310789357|gb|EFQ24890.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001]
Length = 298
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V AE+ P +P +G I + SP A P FE E LS L+
Sbjct: 51 LGKTRVLAKVSAEVTVPYTDRPFEGIFQITSELSPMASPAFEVNRPTEAEVLLSRILEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D SL ++ G+ W + D V+S DGNL DA A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCLIAGQKVWSVRADVHVLSHDGNLTDAACLAVIAALRHFRKP 164
>gi|326508906|dbj|BAJ86846.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 20/169 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++AS+K E+ P A PD+G VA+ P P E + +S AL+
Sbjct: 70 LGDTAMLASIKLEVMSPPAETPDQGSVAVEFHMPPICSPLVRPGRPAEAAPVISKALEDV 129
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ SG ++L L ++ GK W Y+D +++DG+L DA ++ AA ++ IP
Sbjct: 130 LMS--SGM---LNLKELCLISGKASWVAYLDVYCLNADGSLFDAALISVVAAFTHLEIPL 184
Query: 121 VHVAAE------AASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPL 163
V V + ++ + + ++ + E + TL +PFPL
Sbjct: 185 VSVGDDGRVFTVGGNEGKTKYELVNREKRKL---------TLGDIPFPL 224
>gi|46122263|ref|XP_385685.1| hypothetical protein FG05509.1 [Gibberella zeae PH-1]
Length = 293
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 5/133 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G T V+A V AE+ P +P G I + SP P++E LS L+
Sbjct: 51 YGKTRVLAKVSAEVTVPYTDRPFDGVFTITSELSPMVAPSYEVNRPSLEEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL ++ GK CW + +D V++ DGNL DA A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCLIAGKKCWSIRVDLHVLAHDGNLTDAACVAVIAALRHFRKPD 165
Query: 121 VHVAAEAASDEQP 133
+ E + P
Sbjct: 166 SSIEGETLTIYTP 178
>gi|429850259|gb|ELA25551.1| 3 exoribonuclease [Colletotrichum gloeosporioides Nara gc5]
Length = 298
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ V AE+ P A +P +G I + SP A P FE E LS L+
Sbjct: 51 LGKTTILVKVSAEVTVPYADRPFEGIFQIVTELSPMASPAFEVNRPTEAEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ W + D V+S DGNL DA + AAL + P
Sbjct: 111 I--RRSGA---LDTESLCLVAGQKVWSVRADVHVLSHDGNLTDAACLGVIAALRHFRKPD 165
Query: 121 VHVAAEA 127
EA
Sbjct: 166 TSNEGEA 172
>gi|401881827|gb|EJT46109.1| hypothetical protein A1Q1_05320 [Trichosporon asahii var. asahii
CBS 2479]
gi|406701090|gb|EKD04244.1| hypothetical protein A1Q2_01463 [Trichosporon asahii var. asahii
CBS 8904]
Length = 312
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T ++ +KAE+ PS PD+G V +D + P F+ + + +S+ L
Sbjct: 70 MGDTTIVCGIKAEIAEPSGAAPDEGFVVPNIDLPALSSPKFKPGPPVDEAQTMSNWLNDM 129
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ ++ + SL++ GK W +YID + I+ DGN DA A+ AAL NT +PS
Sbjct: 130 LVSSRT-----LPPKSLIIAPGKAAWVIYIDVVCINYDGNAYDAAVLAVMAALRNTRLPS 184
>gi|332157778|ref|YP_004423057.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2]
gi|331033241|gb|AEC51053.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2]
Length = 274
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +K LG P P+ G + V+ P A PTFE +E + EL+ +
Sbjct: 54 IGNTQVLVGIKTTLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L +V+V GK+ ++ID V+ DGNL+DA+G A AAL N +P
Sbjct: 114 IRESRA-----LNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V ++E EV++ EE +PV T K+ L+V
Sbjct: 169 VR-----YNEETGEVEVL-EEKEPLPVEKIPVPVTFAKIGNILVV 207
>gi|25144570|ref|NP_741217.1| Protein EXOS-9, isoform a [Caenorhabditis elegans]
gi|351062706|emb|CCD70741.1| Protein EXOS-9, isoform a [Caenorhabditis elegans]
Length = 434
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A+V AE+ PS+M+P KG + I VD SP A E EL L+
Sbjct: 50 IGNTKVMAAVSAEIAEPSSMRPHKGVINIDVDLSPMANYANEHDRLGSKGMELIRLLELI 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + ID+ +L + GK W + +D ++ DG+LLD A AL + P+
Sbjct: 110 IRDSRC-----IDVEALCIRAGKEIWKIRVDVRILDEDGSLLDCACLAAITALQHFRRPN 164
Query: 121 V 121
V
Sbjct: 165 V 165
>gi|327303316|ref|XP_003236350.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
gi|326461692|gb|EGD87145.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
Length = 292
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 20/162 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AEL P + G + V+ + A P +E EL LS L
Sbjct: 51 LGKTAVLVRISAELTTPRPERDCDGIFTVVVELNDMALPGYETGRPSELEVSLSRTLDKI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + +G++CW++ D ++ DG L+DA AI A L + +
Sbjct: 111 V--RRSNA---LDTESLCIAKGRICWNIRADIHILDCDGGLIDASCLAIMAGLLHFRL-- 163
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDT-SGVPVITTLTKVPF 161
PE + D E F T VPV LTK+P
Sbjct: 164 ------------PESTVRDGEVTVFTTEEKVPVQLNLTKIPL 193
>gi|426192626|gb|EKV42562.1| hypothetical protein AGABI2DRAFT_195867 [Agaricus bisporus var.
bisporus H97]
Length = 318
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG + ++ VKAE+ P PD+G + VD P F+ + + LS L
Sbjct: 79 MGGSTIVCGVKAEIAEPDLENPDEGFLVPNVDLPAMCHPKFKPGPPSDEAQVLSERLFET 138
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L + SLVV GK W LY+D I+ DGN+ DA A+ +AL NT +P
Sbjct: 139 LTSSNF-----MSPKSLVVHPGKFVWTLYVDATCINYDGNVFDATLIAMVSALLNTRLP 192
>gi|336477102|ref|YP_004616243.1| 3' exoribonuclease [Methanosalsum zhilinae DSM 4017]
gi|335930483|gb|AEH61024.1| 3' exoribonuclease [Methanosalsum zhilinae DSM 4017]
Length = 255
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G T +IA +K + G P PD+G + ++ +P A P FE E + E+S +
Sbjct: 48 FGETQLIAGIKLQTGTPFPDSPDEGVIITSMELNPIASPFFEPGPPNENAVEMSRVVDRG 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SG IDL L + EG+ W ++ID V++ GN+LDA AAL IP
Sbjct: 108 IR--ESGT---IDLKKLCITEGEEVWMVFIDIHVLNDGGNILDAASLGAIAALMTAKIPR 162
>gi|315427142|dbj|BAJ48757.1| exosome complex component RRP42 [Candidatus Caldiarchaeum
subterraneum]
gi|315427161|dbj|BAJ48775.1| exosome complex component RRP42 [Candidatus Caldiarchaeum
subterraneum]
gi|343485776|dbj|BAJ51430.1| exosome complex component RRP42 [Candidatus Caldiarchaeum
subterraneum]
Length = 271
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ +K E+G P +P++G + + P A TFE +E + ELS +
Sbjct: 54 LGKTKILTGIKVEVGTPYPDRPNEGVFTVNAELLPLASKTFEPGPPDERAIELSRIVDRV 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K+ I++ L +VEG+ + ++ID V+ DGN DA + AAL +P
Sbjct: 114 IRESKA-----IEVEKLCIVEGQKVYMIFIDCYVLDYDGNYFDASVLSAVAALRTMTLPV 168
Query: 121 VHV 123
V
Sbjct: 169 YRV 171
>gi|341897277|gb|EGT53212.1| CBN-EXOS-9 protein [Caenorhabditis brenneri]
Length = 432
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A+V A++ PS+M+P KG + I VD SP A E EL L+
Sbjct: 50 IGNTKVLAAVSAQIAEPSSMRPHKGVINIDVDLSPMANYANEHDRLGSRGMELIRLLELI 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + ID+ SL + GK W + +D ++ DG+LLD A AL + P+
Sbjct: 110 IRDSRC-----IDVESLCIRAGKEIWKVRVDVRILDDDGSLLDCACLAAITALQHFKRPN 164
Query: 121 V 121
V
Sbjct: 165 V 165
>gi|40217447|emb|CAE46380.1| 3'-5' exoribonuclease [uncultured archaeon]
gi|268323830|emb|CBH37418.1| 3'-5' exoribonuclase [uncultured archaeon]
Length = 260
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK E G P P+KG + + P A P FE E S EL+ +
Sbjct: 53 IGDTVVLVGVKVEPGEPFPDTPNKGILMTNAELVPLASPEFESGPPGENSIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ G ++ IDL L + EG+ W ++ID + +DGNL+DA +L N IP
Sbjct: 113 IRGSET-----IDLEKLCIEEGEKVWMIFIDIHTLDNDGNLVDAAALGAIMSLLNVAIP 166
>gi|408397088|gb|EKJ76238.1| hypothetical protein FPSE_03493 [Fusarium pseudograminearum CS3096]
Length = 293
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G T V+A V AE+ P +P G I + SP P++E LS L+
Sbjct: 51 YGKTRVLAKVSAEVTVPYTDRPFDGVFTITSELSPMVAPSYEVNRPSLEEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL ++ GK CW + +D V++ DGNL DA A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCLIAGKKCWSIRVDLHVLAHDGNLTDAACVAVIAALRHFRKPD 165
Query: 121 VHVAAE 126
+ E
Sbjct: 166 SSIEGE 171
>gi|322699612|gb|EFY91372.1| 3' exoribonuclease [Metarhizium acridum CQMa 102]
Length = 288
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGK 65
++A V AE+ P +P G +I + SP P+FE E LS L+ + +
Sbjct: 51 IVAKVSAEVTVPFTDRPFDGIFSISSELSPMVAPSFEVNRPTEQEVLLSRILEKTI--RR 108
Query: 66 SGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAA 125
SGA +D SL +V G+ CW + D V+S DGNLLD A+ AAL + P +
Sbjct: 109 SGA---LDTESLCLVAGQKCWSVRADVHVLSHDGNLLDVACFAVVAALRHFRKPETTMEG 165
Query: 126 EAASDEQP 133
E + P
Sbjct: 166 ETLTIYTP 173
>gi|294495472|ref|YP_003541965.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM
5219]
gi|292666471|gb|ADE36320.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM
5219]
Length = 261
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G T V+ VK ++G P P +G + ++ +P A P FE E + E+ + +
Sbjct: 55 GDTQVMVGVKMQVGTPFPDSPAEGVIITSMELNPIASPDFEAGPPREKAIEMGRIVDRGI 114
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+SGA ID++ L + EG+ W ++ID V+++ GN+LDA AAL T +PS
Sbjct: 115 R--ESGA---IDINKLCITEGEEVWMVFIDVHVLNNSGNILDAASLGAIAALMTTTVPS 168
>gi|242082071|ref|XP_002445804.1| hypothetical protein SORBIDRAFT_07g026060 [Sorghum bicolor]
gi|241942154|gb|EES15299.1| hypothetical protein SORBIDRAFT_07g026060 [Sorghum bicolor]
Length = 306
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ASVK E+ P A PD+G VA+ P P E++ +S AL+
Sbjct: 70 LGDTAMLASVKLEVMSPPAEHPDEGSVAVEFHMPPICSPLVRPGRSAEVAPVISKALEDV 129
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ + ++L L ++ GK W Y+D +++DG+L DA + AA ++ IP
Sbjct: 130 LM-----SSGMLNLKDLCLITGKASWLAYLDIYCLNADGSLFDAALISAVAAFTHLEIPL 184
Query: 121 VHV 123
V V
Sbjct: 185 VSV 187
>gi|384250786|gb|EIE24265.1| exoribonuclease PH component of the exosome [Coccomyxa
subellipsoidea C-169]
Length = 293
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 22/169 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V+ + L P +P++G V V+ SP A P+F+ GR GE + E++ L+
Sbjct: 17 MGQTKVMTVITPTLTAPYEDRPNEGAVRFNVEYSPMASPSFQAGRPGEA-AIEVTRLLER 75
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
++ ID +L V+ G W L ID V+ + GNL DA AAL P
Sbjct: 76 AFRDSRA-----IDQEALCVLAGHRVWSLSIDVHVLDNGGNLADACMLCTLAALMAFRRP 130
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
VAA A + V V++ + P PL +H+L
Sbjct: 131 DTEVAAGGAESGRARVT---------------VLSPSAREPVPLSLHHL 164
>gi|357152306|ref|XP_003576076.1| PREDICTED: exosome complex component RRP43-like [Brachypodium
distachyon]
Length = 307
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++AS+K E+ P PD+G VA+ P P E++ LS AL+
Sbjct: 71 LGDTAMLASIKLEVMSPPTETPDEGSVAVEFHMPPICSPLVRPGRPAEMAPVLSKALEDV 130
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ SG I+L L ++ GK W Y+D +++DG+L DA + AA ++ IP
Sbjct: 131 LMS--SGM---INLKELCLISGKASWLAYLDVYCLNADGSLFDAALISAVAAFTHLEIPL 185
Query: 121 VHV 123
V V
Sbjct: 186 VSV 188
>gi|156230391|gb|AAI52249.1| MGC174638 protein [Danio rerio]
Length = 277
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 10/151 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTF-EGRGGEELSAELSSALQH 59
+G+T VI +KAEL P + +KG + VD P F G GE+ A A Q
Sbjct: 53 IGNTTVICGIKAELAVPPSEAQNKGYLVPNVDLPPLCSSRFGAGPPGEQAQA----ASQ- 107
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + I+ L + + K+CW LY D + + DGNLLDA + AAL +P
Sbjct: 108 -FIADVIESSDLINSEELCIEKAKLCWVLYCDIMCLDYDGNLLDACITVLLAALKTAQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGV 150
V + E + EVDI + L+ + V
Sbjct: 167 EVTINKET---DLAEVDIEKKRRLKINRHPV 194
>gi|302686574|ref|XP_003032967.1| hypothetical protein SCHCODRAFT_76318 [Schizophyllum commune H4-8]
gi|300106661|gb|EFI98064.1| hypothetical protein SCHCODRAFT_76318 [Schizophyllum commune H4-8]
Length = 291
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ VKAE+ +P P+ G + VD P F+ E + LS L
Sbjct: 77 LGDTTIVCGVKAEIAQPDLDSPEDGFIVPNVDLPAICSPKFKPGPPTEEAQVLSDRLNEV 136
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L A + SSL++ GK W LYID I+ DGN DA A+ AAL +T +P
Sbjct: 137 LT-----AHDVLPTSSLIIHPGKAAWVLYIDATCINYDGNAFDATLIAMIAALKSTRLP 190
>gi|302654106|ref|XP_003018865.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Trichophyton verrucosum HKI 0517]
gi|291182546|gb|EFE38220.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Trichophyton verrucosum HKI 0517]
Length = 292
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 20/162 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AEL P + G + V+ + A P +E EL LS L
Sbjct: 51 LGKTAVLVRISAELTTPRPERDCDGIFTVVVELNDMALPGYETGRPSELEVSLSRTLDKI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + +G++CW++ D ++ DG L+DA AI A L + +
Sbjct: 111 V--RRSNA---LDTESLCIAKGRICWNVRADIHILDCDGGLIDASCLAIMAGLLHFRL-- 163
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDT-SGVPVITTLTKVPF 161
PE + D E F T VPV LTK+P
Sbjct: 164 ------------PESTVRDGEVTVFTTEEKVPVQLNLTKIPL 193
>gi|66529825|ref|XP_624000.1| PREDICTED: exosome complex exonuclease RRP43-like [Apis mellifera]
Length = 281
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 10/156 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T ++ +K+EL P A P+ G + ++ P P F G A++ + L
Sbjct: 53 IGNTTIVCGIKSELAVPKAESPECGYIVPNIELPPLCSPKFRP-GPPSDQAQVITKLVEN 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L A IDL L V +GK+ W LY D + I+ DG+++DA A+ A L+ +P
Sbjct: 112 ILRN----SAAIDLKELCVYKGKLVWVLYCDLVCINYDGSIIDACIGALTATLNTLTLPE 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
+ E V I+ + ++F +PV T
Sbjct: 168 IFYNVETG-----HVSINSTKRIRFPIKALPVSITF 198
>gi|295322022|pdb|3M85|G Chain G, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322023|pdb|3M85|H Chain H, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322024|pdb|3M85|I Chain I, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
Length = 259
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK + G P+ PD+G + + + P A PTFE +E S EL+ +
Sbjct: 53 LGDTQVVVGVKMQPGEPAPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ +DLS LV+ EG+ W +++D + DGNLLDA A AAL NT +P+
Sbjct: 113 IRESEA-----VDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPA 167
>gi|326469540|gb|EGD93549.1| 3' exoribonuclease [Trichophyton tonsurans CBS 112818]
gi|326478933|gb|EGE02943.1| exosome complex exonuclease RRP45 [Trichophyton equinum CBS 127.97]
Length = 292
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 20/162 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AEL P + G + V+ + A P +E EL LS L
Sbjct: 51 LGKTAVLVRISAELTTPRPERDCDGIFTVVVELNDMALPGYETGRPSELEVSLSRTLDKI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + +G++CW++ D ++ DG L+DA AI A L + +
Sbjct: 111 V--RRSNA---LDTESLCIAKGRICWNVRADIHILDCDGGLIDASCLAIMAGLLHFRL-- 163
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDT-SGVPVITTLTKVPF 161
PE + D E F T VPV LTK+P
Sbjct: 164 ------------PESTVRDGEVTVFTTEEKVPVQLNLTKIPL 193
>gi|125539848|gb|EAY86243.1| hypothetical protein OsI_07612 [Oryza sativa Indica Group]
Length = 408
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ A+L +P +P++G +AIF + SP A+P FE GR GE + EL +
Sbjct: 53 LGDTRVMGYATAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGES-AIELGRVVDR 111
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDG--NLLDALGAAIKAALSNTG 117
L ++ +D+ SL VV GK W + +D ++ + G N+ DA+ +++ +
Sbjct: 112 GLRESRA-----VDMESLCVVAGKHVWSVRVDLHILDNGGELNVPDAMVLSLRNLIDAA- 165
Query: 118 IPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
++ A ++ +PE + E D V V + P PL +H+L
Sbjct: 166 --NIAALAALSTFRRPECTVGGE-----DGQQVTVHDPEVRDPLPLTIHHL 209
>gi|221128137|ref|XP_002160444.1| PREDICTED: exosome complex component RRP45-like [Hydra
magnipapillata]
Length = 437
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A EL +P +P +G++ + VD SP A P+FE E++ ++ C
Sbjct: 52 LGETRVLAQTSCELVKPIGTRPTEGQLHLNVDLSPMASPSFETGRMTSQGLEINRLIERC 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
+ + ID+ SL ++ G+ W + +D +V++ GN+LD A A+L++
Sbjct: 112 IKESRC-----IDVESLCLIAGEKVWSIRVDIVVLNDCGNILDCSCIAGIASLAH 161
>gi|226494746|ref|NP_001148711.1| exosome complex exonuclease RRP43 [Zea mays]
gi|195621578|gb|ACG32619.1| exosome complex exonuclease RRP43 [Zea mays]
Length = 306
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ASVK E+ PSA PD+G V++ P P E++ +S AL+
Sbjct: 70 VGDTAMLASVKLEVMSPSAEYPDEGSVSVEFHMPPICSPLVRPGRSAEVAPVISKALEDV 129
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ + ++L L ++ GK W Y+D +++DG+L DA + +A ++ IP
Sbjct: 130 LMSSRM-----LNLKDLCLITGKASWLAYLDIYCLNADGSLFDAALISAVSAFTHLEIPL 184
Query: 121 VHV 123
V V
Sbjct: 185 VSV 187
>gi|12835620|dbj|BAB23303.1| unnamed protein product [Mus musculus]
Length = 160
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 8/79 (10%)
Query: 85 CWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVA--AEAASDEQPEVDISDEEF 142
CW LY+D L++ GNL DA+ A+KAAL NT IP V V E A D +++SD+ +
Sbjct: 1 CWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKD----IELSDDPY 56
Query: 143 --LQFDTSGVPVITTLTKV 159
++ VP I TL K+
Sbjct: 57 DCIRLSVENVPCIVTLCKI 75
>gi|52549122|gb|AAU82971.1| tRNA nucleotidyltransferase [uncultured archaeon GZfos24D9]
Length = 260
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK E G P P+KG + + P A P FE E S EL+ +
Sbjct: 53 IGDTVVLVGVKVEPGAPFPDTPNKGILMTNAELVPLASPEFESGPPNEDSIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ G ++ IDL L + EG+ W ++ID + +DGNL+DA +L N IP
Sbjct: 113 IRGSET-----IDLEKLCIEEGEKVWMVFIDIHTLDNDGNLVDAAALGAITSLLNVTIP 166
>gi|147898885|ref|NP_001085439.1| exosome component 9 [Xenopus laevis]
gi|49114791|gb|AAH72749.1| SCL75 protein [Xenopus laevis]
Length = 431
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V E+ P +P +G + ++ SP A P FE ELS +L+ L+ C
Sbjct: 50 LGKTRVLCQVSCEIVTPKMSRPTEGILFFNLEISPMAFPGFEMGRQSELSVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL V G+ W + +D +++ +GN++DA A A L + P
Sbjct: 110 LRNSKC-----IDTESLCVAAGEKVWQIRVDLHLLNHEGNIIDAASIAAIAGLCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V E + PE
Sbjct: 165 VSVQGEEVTVYTPE 178
>gi|328792578|ref|XP_395303.3| PREDICTED: exosome complex exonuclease RRP42-like, partial [Apis
mellifera]
Length = 156
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 88 LYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEF--LQF 145
+Y+D L++ GNL DA+G A+KAAL++T IP + A +P++++SD+ + +Q
Sbjct: 1 IYVDVLILQCGGNLFDAVGIAVKAALNSTEIPKITTATLDGG--EPDIELSDDPYDCIQL 58
Query: 146 DTSGVPVITTLTKV 159
DTS P+I TL K+
Sbjct: 59 DTSNYPIIVTLCKI 72
>gi|71724847|gb|AAZ38885.1| 3' exoribonuclease [Xenopus laevis]
Length = 431
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V E+ P +P +G + ++ SP A P FE ELS +L+ L+ C
Sbjct: 50 LGKTRVLCQVSCEIVTPKMSRPTEGILFFNLEISPMAFPGFEMGRQSELSVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL V G+ W + +D +++ +GN++DA A A L + P
Sbjct: 110 LRNSKC-----IDTESLCVAAGEKVWQIRVDLHLLNHEGNIIDAASIAAIAGLCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V E + PE
Sbjct: 165 VSVQGEEVTVYTPE 178
>gi|390939120|ref|YP_006402858.1| 3' exoribonuclease [Desulfurococcus fermentans DSM 16532]
gi|390192227|gb|AFL67283.1| 3' exoribonuclease [Desulfurococcus fermentans DSM 16532]
Length = 286
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA VK EL P +P +G + + + P A P+FE +E + E++ +
Sbjct: 58 LGGTQVIAGVKLELEEPFPDRPGEGVLQVHAEFVPLASPSFEPGPPDENAIEVARVIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ + L +L + GK+ W +Y D ++ GN++D A AL+ + IP
Sbjct: 118 LRESKA-----VKLDALAIEPGKIAWSVYTDIYLVDHQGNIIDTSMLASMLALATSRIPE 172
Query: 121 V 121
+
Sbjct: 173 L 173
>gi|312080640|ref|XP_003142686.1| hypothetical protein LOAG_07104 [Loa loa]
gi|307762153|gb|EFO21387.1| hypothetical protein LOAG_07104 [Loa loa]
Length = 521
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A V L PS ++ + G V + VD SP A P +E GR G + EL L+
Sbjct: 178 LGETKVLAQVSCSLVEPSTVRGNMGTVEVHVDMSPMASPDYEDGRLGSK-GLELMRILE- 235
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
LL SG IDL SL + K W + ID V++SDG+L+D A AL++ P
Sbjct: 236 -LLYRNSGV---IDLESLCLRTFKQVWQIRIDVHVLASDGSLVDCACIASLTALAHFRRP 291
Query: 120 SVHVAAEA 127
V V ++
Sbjct: 292 DVSVLPDS 299
>gi|380026683|ref|XP_003697074.1| PREDICTED: exosome complex component RRP43-like [Apis florea]
Length = 281
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 10/156 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T ++ +K+EL P A P+ G + ++ P P F + + ++ +++
Sbjct: 53 IGNTTIVCGIKSELAVPKAESPECGYIVPNIELPPLCSPKFRPGPPSDQAQVITKLIENI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L A IDL L V +GK+ W LY D + I+ DG+++DA A+ A L+ +P
Sbjct: 113 LRNS-----AAIDLKELCVYKGKLVWVLYCDLVCINYDGSIIDACIGALTATLNTLTLPE 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
+ E V I+ + ++F +PV T
Sbjct: 168 IFYNIETG-----HVSINSTKRIKFPIKALPVSITF 198
>gi|156553642|ref|XP_001600402.1| PREDICTED: exosome complex component RRP43-like [Nasonia
vitripennis]
Length = 277
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T V+ +KAEL P A PD G + VD SP + F G GEE + ++
Sbjct: 53 IGNTSVVCGIKAELASPKAETPDCGFIIPNVDLSPLSSSKFRPGPPGEETQCA-TKLVER 111
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L+ + +DL L + + K+ W LY D + I DG+++DA A+ AA +P
Sbjct: 112 ILVNSE-----AVDLKDLCIHKDKLVWVLYCDLICIDYDGSVIDACIGALVAAFKILTLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V E + + + D+ + +P TT
Sbjct: 167 VVEYTIETGATK-----VDDKNRISVPLRQLPASTTF 198
>gi|52550471|gb|AAU84320.1| 3'-5' exoribonuclease [uncultured archaeon GZfos9D1]
Length = 257
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T+V+ VK ELG P PDKG + + P A P FE E S +L+ +
Sbjct: 53 IGDTEVLVGVKVELGTPFPDTPDKGVIITNAELVPLASPKFESGPPNENSIQLARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ G ++ IDL L + +G+ W ++ID V+ +GNL DA A+L N IP+
Sbjct: 113 IRGSET-----IDLDKLCIEKGEKVWMVFIDIHVLDDNGNLADAAALGAIASLLNLRIPN 167
>gi|387018402|gb|AFJ51319.1| Exosome complex exonuclease RRP43-like [Crotalus adamanteus]
Length = 276
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 19/133 (14%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTF-------EGRGGEELSAEL 53
+G+T VI +KAE P+ +KG + VD P F E + + A++
Sbjct: 57 LGNTTVICGIKAEFATPTVDSSNKGYIIPNVDLPPLCSSRFRPGPPCEEAQAASQFIADI 116
Query: 54 SSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
Q I L +++GK+ W LY D + + DGNLLDA A AAL
Sbjct: 117 IENSQM------------IMKEDLCILDGKIVWVLYCDIICLDYDGNLLDACICAFLAAL 164
Query: 114 SNTGIPSVHVAAE 126
N +P V + AE
Sbjct: 165 KNVLLPVVAINAE 177
>gi|119872347|ref|YP_930354.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum islandicum
DSM 4184]
gi|119673755|gb|ABL88011.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum islandicum DSM
4184]
Length = 274
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 21/164 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSAL--- 57
+G T V+A VK LG+P PD+G + + + P A P E +E + EL+ +
Sbjct: 59 LGKTHVVAGVKVSLGQPFPDAPDEGVLVVNAEVLPHASPYTEVGPPDEFAIELARVIDRG 118
Query: 58 -QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+HC +D LVV EG + L++D VI+ DGNL+DA A AAL +T
Sbjct: 119 IRHC---------GYVDFKKLVV-EGGKAYVLWVDLYVINDDGNLIDAANLAAVAALKDT 168
Query: 117 GIPSVHVAAEAASDEQ-PEVDISDEEFLQFDTSGVPVITTLTKV 159
+P V DEQ ++D +++ L + S P+ ++ K+
Sbjct: 169 QLPVV------VKDEQGVKLDRNNKTPLPIEVSKAPIAVSVGKI 206
>gi|395520931|ref|XP_003764575.1| PREDICTED: exosome complex component RRP43 [Sarcophilus harrisii]
Length = 276
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P +KG + VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPVDSLNKGYIVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISHGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
+V + E EV+ + L T P+ T+
Sbjct: 167 AVTINEETG---LAEVNFKKKSHLNIRTH--PIATSF 198
>gi|11498105|ref|NP_069330.1| exosome complex RNA-binding protein Rrp42 [Archaeoglobus fulgidus
DSM 4304]
gi|29336575|sp|O29756.1|ECX2_ARCFU RecName: Full=Probable exosome complex exonuclease 2
gi|83754328|pdb|2BA0|I Chain I, Archaeal Exosome Core
gi|83754329|pdb|2BA0|H Chain H, Archaeal Exosome Core
gi|83754330|pdb|2BA0|G Chain G, Archaeal Exosome Core
gi|83754337|pdb|2BA1|G Chain G, Archaeal Exosome Core
gi|83754338|pdb|2BA1|H Chain H, Archaeal Exosome Core
gi|83754339|pdb|2BA1|I Chain I, Archaeal Exosome Core
gi|295322010|pdb|3M7N|G Chain G, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322011|pdb|3M7N|H Chain H, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322012|pdb|3M7N|I Chain I, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|2650132|gb|AAB90743.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 259
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK + G P PD+G + + + P A PTFE +E S EL+ +
Sbjct: 53 LGDTQVVVGVKMQPGEPYPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DLS LV+ EG+ W +++D + DGNLLDA A AAL NT +P+
Sbjct: 113 I-----RESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPA 167
>gi|308502001|ref|XP_003113185.1| CRE-EXOS-9 protein [Caenorhabditis remanei]
gi|308265486|gb|EFP09439.1| CRE-EXOS-9 protein [Caenorhabditis remanei]
Length = 432
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A+V A++ PS+M+P+KG + I VD SP A E EL L+
Sbjct: 50 IGNTKVMAAVSAQIAEPSSMRPNKGVINIDVDLSPMANVANEHDRLGSKGMELIRLLELI 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + ID+ SL + G W + +D ++ DG+LLD A AL + P+
Sbjct: 110 IRDSRC-----IDVESLCIRAGSEIWKVRVDVRILDEDGSLLDCACLAAITALQHFKRPN 164
Query: 121 VHVAA 125
V + A
Sbjct: 165 VSLEA 169
>gi|219129727|ref|XP_002185033.1| ribosomal RNA processing protein [Phaeodactylum tricornutum CCAP
1055/1]
gi|217403528|gb|EEC43480.1| ribosomal RNA processing protein [Phaeodactylum tricornutum CCAP
1055/1]
Length = 354
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 3 STDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGE-ELSAELSSALQHCL 61
S ++ SVKAE+ PSA+ P +G + + V+ ++ P + R + EL A LS L L
Sbjct: 79 SLHMLCSVKAEVVHPSALHPAQGAMELHVESLTSSGPNSQRRKTQDELEATLSKLLMRDL 138
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVI---SSDGNLLDALGAAIKAALSNTGI 118
+DL +L +V W L++D V+ SS G+L DA I+AAL T +
Sbjct: 139 ----------VDLEALCIVPYHYVWRLHVDLFVLTAGSSHGSLCDAASHVIRAALQCTRL 188
Query: 119 PSV 121
P++
Sbjct: 189 PAI 191
>gi|198419225|ref|XP_002123693.1| PREDICTED: similar to Exosome component 9 [Ciona intestinalis]
Length = 385
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 74/161 (45%), Gaps = 18/161 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+A V AEL RP + +G + + V+ S A P + + AEL L+
Sbjct: 52 MGGTKVMAQVAAELCRPRESRQSEGSLGVQVEMSMMAAPHLDPAKPGDSGAELQQMLERS 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
++ ++ +DL L V G+ W++ I V+S DGNLLD A +L + P
Sbjct: 112 IVMSQA-----VDLEELCVRVGEKSWNIQIFVHVLSHDGNLLDCATIASMTSLKHFKRPD 166
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPF 161
V V + EV I E D +P+ TL VPF
Sbjct: 167 VSVVGQ-------EVTIHKFE----DKHPIPL--TLHHVPF 194
>gi|52548653|gb|AAU82502.1| tRNA nucleotidyltransferase [uncultured archaeon GZfos18B6]
Length = 238
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK E G P P+KG + + P A P FE E S EL+ +
Sbjct: 31 IGDTVVLVGVKVEPGAPFPDTPNKGVLMTNAELVPLASPEFESGPPGENSIELARVVDRG 90
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ G ++ IDL L + EG+ W ++ID + +DGNL+DA +L N IP
Sbjct: 91 IRGSET-----IDLEKLCIEEGEKVWMIFIDIHTLDNDGNLVDAAALGAIMSLLNVTIP 144
>gi|328862357|gb|EGG11458.1| hypothetical protein MELLADRAFT_70820 [Melampsora larici-populina
98AG31]
Length = 292
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 14/161 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ ++ E+ P+ M P++G + ++ F+ E S + + L+
Sbjct: 79 IGNTSVLCGIRFEVSEPNFMNPNQGYIIPNIEIGSLCSSKFKPNQINEQSQTILTQLKMI 138
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + I+ SSLV+ K+ W +YID + +S+DGN+LDA +I AL P
Sbjct: 139 L-----KSSEIIEPSSLVIQPEKLVWVIYIDVICLSNDGNVLDASIISITQALQTAKRPQ 193
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPF 161
V E EV + D F + +P+ T PF
Sbjct: 194 VEFDIETN-----EVILLDPNFFE----PIPIPLNHTIHPF 225
>gi|352682029|ref|YP_004892553.1| exosome complex exonuclease 2 [Thermoproteus tenax Kra 1]
gi|350274828|emb|CCC81474.1| exosome complex exonuclease 2, aRrp42 (RNase PH domain)
[Thermoproteus tenax Kra 1]
Length = 274
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 10/165 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK LG P PD+G + + + P A P E +E + EL+ +
Sbjct: 59 LGRTRVVAGVKIGLGNPFPDAPDEGVLVVNAEVLPHASPYSEVGPPDETAIELARVVDRG 118
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L SG ID L + + KV + +++D V++ DGNL+DA A AAL +T +P+
Sbjct: 119 L--RHSGF---IDFKRLAIDQSKV-YVVWLDLYVLNDDGNLVDASNLAAVAALRSTMLPT 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V V EA + ++D ++ + D S P+ +L K+ +IV
Sbjct: 173 V-VKDEAGA---YKLDKNNRTAMPSDLSKAPISVSLGKIDTRIIV 213
>gi|308809605|ref|XP_003082112.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 (ISS)
[Ostreococcus tauri]
gi|116060579|emb|CAL55915.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 (ISS)
[Ostreococcus tauri]
Length = 314
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 69 GAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAA 128
G GIDL SL V G+ W L +D + G++LDAL A++ AL++T IP V + +
Sbjct: 130 GGGIDLRSLCVRPGRARWTLAVDAVCACDRGSMLDALSVAVRGALADTKIPKVSLVGVGS 189
Query: 129 SDEQPEVDISD--EEFLQFDTSGVPVITTLTKV 159
E E++I D + + D S V+ T TK+
Sbjct: 190 DGEGGELEIDDDPDACTRVDVSRCGVVATTTKI 222
>gi|170056939|ref|XP_001864258.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
gi|167876545|gb|EDS39928.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
Length = 274
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 9/156 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KAEL P ++P+ G + ++ SP P + E + S +L
Sbjct: 54 IGNTTVVCGIKAELAPPKPVEPETGFLVPNIEISPLCSPKYRPGPPSEEAQVYSCSLADA 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L SG ++L L + + K+ W LY D + + DG + DA A+ AAL +P
Sbjct: 114 ILN--SGC---VNLKDLCITKEKLVWALYCDLVCLDHDGCVFDASVIALVAALHTLTLPR 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
+ A+ +DE+ ++ E L S +PV T+
Sbjct: 169 MRHNAD--TDEREVLEEEPREALTL--SSIPVTTSF 200
>gi|218884634|ref|YP_002429016.1| exosome complex RNA-binding protein Rrp42 [Desulfurococcus
kamchatkensis 1221n]
gi|218766250|gb|ACL11649.1| Probable exosome complex exonuclease 2 [Desulfurococcus
kamchatkensis 1221n]
Length = 286
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA VK EL P +P +G + + + P A P+FE +E + E++ +
Sbjct: 58 LGGTQVIAGVKLELEEPFPDRPGEGVLQVHAEFVPLASPSFEPGPPDENAIEVARVIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ + L +L + GK+ W +Y D ++ GN++D A AL+ + IP
Sbjct: 118 LRESKA-----VKLDALAIEPGKIVWSVYTDIYLVDHQGNIIDTGMLASMLALATSRIPE 172
Query: 121 V 121
+
Sbjct: 173 L 173
>gi|342321513|gb|EGU13446.1| Hypothetical Protein RTG_00162 [Rhodotorula glutinis ATCC 204091]
Length = 298
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 66/145 (45%), Gaps = 12/145 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V E+ P +P++G + VD SP P F + + LSS L+
Sbjct: 70 LGKTSVVCGVTLEIAPPDLARPNEGFIVPNVDLSPLCSPLFRPGPPPDEAQVLSSRLRDV 129
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LL + LSSLV+ GK W +YID + ++ DG +LDA A AL N P
Sbjct: 130 LLSSNI-----LPLSSLVIEPGKAVWVVYIDVVCLNYDGGVLDAAVLAAVGALRNLRFPE 184
Query: 121 V-------HVAAEAASDEQPEVDIS 138
V E ++E P IS
Sbjct: 185 TTFDVDTSEVTCERVAEEHPGSRIS 209
>gi|356526509|ref|XP_003531860.1| PREDICTED: exosome complex component RRP43-like [Glycine max]
Length = 302
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 23/176 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST ++ ++K E+ PS PD+G +AI CSP P +S +LS
Sbjct: 67 IGSTTILTAIKMEVMTPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDT 126
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + IDL L +V GK W Y+D + +DG L DA + A+LS+
Sbjct: 127 I---------SSSKMIDLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAVASLSHL 177
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGV---PVITTLTKVPFPL--IVHN 167
IP V A +D+ V +S+E+ + + V TL +PF L I+H
Sbjct: 178 QIPVV-----AMNDDGKIVLVSEEDGQKREQEPVNKEKRKLTLRSIPFSLTCILHK 228
>gi|326914227|ref|XP_003203428.1| PREDICTED: exosome complex exonuclease RRP43-like [Meleagris
gallopavo]
Length = 291
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAE---LSSA 56
+G+T VI VKAEL P+ +KG + V+ F G GEE A ++
Sbjct: 68 LGNTTVICGVKAELAAPAVDSANKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADV 127
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+++ + K L + EGK+ W LY D + + DGN+LDA A+ AAL N
Sbjct: 128 IENSQIIAKE---------DLCIAEGKLAWVLYCDIICLDYDGNILDASTFALLAALKNV 178
Query: 117 GIPSVHVAAEAASDE 131
+PSV + E E
Sbjct: 179 QLPSVTINEETGLSE 193
>gi|325088441|gb|EGC41751.1| exosome complex exonuclease RRP45 [Ajellomyces capsulatus H88]
Length = 293
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 18/161 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AE+ +P + + + G + V+ + A P +E EL ++L L
Sbjct: 51 LGKTSVVVRISAEVTKPRSERENDGIFTVSVELNDMASPAYETGRQSELESQLVRTLDRI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + GK CW + D V+ SDG L+D+ AI L + +P
Sbjct: 111 I--RRSNA---LDTESLCIAAGKNCWHVRADVHVVDSDGGLVDSCCLAIMTGLLHFRLPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPF 161
V + +PE VP LTK+P
Sbjct: 166 AVVREGRVTVYRPE-------------ERVPSPLNLTKLPL 193
>gi|353239012|emb|CCA70939.1| related to Exosome complex exonuclease RRP43 [Piriformospora indica
DSM 11827]
Length = 279
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ VKAE+ P P +G + V+ S F+ E + +S L
Sbjct: 55 LGETTIVCGVKAEIAEPDLDAPTRGFIVPNVEISAICAARFKPGPPSEEAQIISEQLNQI 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K + L SL + K W +YID + I+ DGN LDA A+ ALSNT +P
Sbjct: 115 IAKSKC-----LPLDSLCIEPRKAVWTIYIDAVCINYDGNALDATLLAMTTALSNTQLPQ 169
Query: 121 VH 122
Sbjct: 170 AR 171
>gi|226293456|gb|EEH48876.1| exosome complex exonuclease RRP45 [Paracoccidioides brasiliensis
Pb18]
Length = 300
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 18/161 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AE+ +P + + G + V+ + A P F+ E+ +L+ L
Sbjct: 51 LGKTSVVVRISAEVTKPHPERENDGIFTVVVELNDMASPAFKTGWQSEMETQLARILDRI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + GK CW + D VI SDG L+D+ AI AL + +P
Sbjct: 111 I--RRSNA---LDTESLCIAAGKNCWHIRADVHVIDSDGGLVDSCCLAIMTALLHFRLPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPF 161
V + PE VP LTK+P
Sbjct: 166 AIVREGRVTVFSPE-------------ERVPSPLNLTKLPL 193
>gi|225684062|gb|EEH22346.1| exosome component 9 [Paracoccidioides brasiliensis Pb03]
Length = 295
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 18/161 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AE+ +P + + G + V+ + A P F+ E+ +L+ L
Sbjct: 51 LGKTSVVVRISAEVTKPHPERENDGIFTVVVELNDMASPAFKTGWQSEMETQLARILDRI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + GK CW + D VI SDG L+D+ AI AL + +P
Sbjct: 111 I--RRSNA---LDTESLCIAAGKNCWHIRADVHVIDSDGGLVDSCCLAIMTALLHFRLPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPF 161
V + PE VP LTK+P
Sbjct: 166 AIVREGRVTVFSPE-------------ERVPSPLNLTKLPL 193
>gi|170039450|ref|XP_001847547.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
gi|167863024|gb|EDS26407.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
Length = 274
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 9/156 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KAEL P ++P+ G + ++ SP P + E + S +L
Sbjct: 54 IGNTTVVCGIKAELTPPKPVEPETGFLVPNIEISPLCSPKYRPGPPSEEAQVYSCSLADA 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L SG ++L L + + K+ W LY D + + DG + DA A+ AAL +P
Sbjct: 114 ILN--SGC---VNLKDLCITKEKLVWALYCDLVCLDHDGCVFDASVIALVAALHTLTLPR 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
+ A+ +DE+ ++ E L S +PV T+
Sbjct: 169 MRHNAD--TDEREVLEEEPREALTL--SSIPVTTSF 200
>gi|226372912|gb|ACO52081.1| Exosome complex exonuclease RRP43 [Rana catesbeiana]
Length = 272
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+ VI +KAE P P+KG + V+ +P P F G GEE A+++S
Sbjct: 53 IGNCTVICGIKAEFATPPIDAPNKGYIVPNVELTPLCSPRFRPGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + GNLLD A+ A+L N +P
Sbjct: 109 --IADVIENSQMILKEDLCIENGKLAWVLYCDLICLDYGGNLLDTCMCALVASLRNARLP 166
Query: 120 SVHVAAE 126
SV + E
Sbjct: 167 SVKINEE 173
>gi|156937004|ref|YP_001434800.1| exosome complex RNA-binding protein Rrp42 [Ignicoccus hospitalis
KIN4/I]
gi|156565988|gb|ABU81393.1| ribosomal RNA-processing protein RRP42 [Ignicoccus hospitalis
KIN4/I]
Length = 276
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 6/136 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A VK E+G+P PD G + + + P A FE +E + EL+ +
Sbjct: 58 IGNTKVLAGVKVEVGKPFKDVPDAGVLNVNAELLPLASSEFEPGPPDENAIELARVIDRA 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + G IDL LV++ G+ +++D V+ DGNL DA A AAL +T P
Sbjct: 118 L--REPGV---IDLKELVLIPGEKVLVVWLDVYVLDHDGNLFDASMLASMAALLDTRYPE 172
Query: 121 VHVAAEAASDEQPEVD 136
+V E S E E +
Sbjct: 173 -YVVREDGSVEVDEAN 187
>gi|193664372|ref|XP_001942983.1| PREDICTED: exosome complex exonuclease RRP43-like [Acyrthosiphon
pisum]
Length = 267
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 19/160 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T V+ +KAELG P A PD G + + ++ CS P ++++ L+
Sbjct: 52 IGNTAVVCGIKAELGVPKAEAPDIGYLLVNIELPSLCSKKIRPGIPCDEAMQMTSFLNEV 111
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+C + +DL L + K+ W L D ++ DG++LDA A+ +AL
Sbjct: 112 CNNCKI---------LDLQQLCISVDKLVWILSCDIYCLNYDGSVLDACLIALLSALQTV 162
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
IP E D++ E E ++ + +PV +T
Sbjct: 163 KIP------EVKYDKETEETTVIENYIPLKVNSLPVSSTF 196
>gi|340709348|ref|XP_003393272.1| PREDICTED: exosome complex component RRP43-like [Bombus terrestris]
Length = 278
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 10/156 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KAEL P A P+ G + ++ P P F + + ++ +++
Sbjct: 53 IGNTTVVCGIKAELAAPKAESPECGYIVPNIELPPLCSPKFRPGPPSDQAQVITKLIENI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L A IDL L V +GK+ W LY D + I+ DG+++DA A+ A LS +P
Sbjct: 113 LRNS-----AAIDLKDLCVYKGKLVWVLYCDLVCINYDGSIIDACIGALTATLSTLTLPE 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
E V ++ + ++F +PV T
Sbjct: 168 TLYNVETG-----RVSVNSTKRIRFLVKALPVSITF 198
>gi|84490040|ref|YP_448272.1| exosome complex RNA-binding protein Rrp42 [Methanosphaera
stadtmanae DSM 3091]
gi|84373359|gb|ABC57629.1| putative exosome complex, exonuclease 2 subunit [Methanosphaera
stadtmanae DSM 3091]
Length = 265
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 12/165 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI VKA++ P P+ G + + A FE + + E+S +
Sbjct: 52 IGCTTVIVGVKAQMTTPFNNAPNSGIIITNTELLAIASRNFEYGPPNKFAVEISRVVDRA 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL L V+EG W L+ID ++ DGN++DA AL T IP+
Sbjct: 112 I-----RESPVVDLDKLCVIEGSKSWKLHIDMYIVDFDGNIMDAACLGAICALLTTKIPT 166
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
A+ E+ I +E ++ T+ K+ LIV
Sbjct: 167 -------ATSVNGEIVIDEENLTPLPIKNRSILCTVVKINNQLIV 204
>gi|187607878|ref|NP_001120226.1| exosome component 9 [Xenopus (Silurana) tropicalis]
gi|169642591|gb|AAI60389.1| LOC100145275 protein [Xenopus (Silurana) tropicalis]
Length = 406
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V +E+ P +P +G + + SP A P FE ELS +L+ L+ C
Sbjct: 50 LGKTRVLCQVSSEIVTPKMNRPTEGILFFDLAISPMAFPGFEMGRNSELSVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL V G+ W + +D +++ +GN++DA A A L + P
Sbjct: 110 LRNSKC-----IDTESLCVAAGEKVWQIRVDLHLLNHEGNIIDAASIAAIAGLCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V E + PE
Sbjct: 165 VSVQGEEVTVYTPE 178
>gi|350425266|ref|XP_003494065.1| PREDICTED: exosome complex component RRP43-like [Bombus impatiens]
Length = 278
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 10/156 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KAEL P A P+ G + ++ P P F G A++ + L
Sbjct: 53 IGNTTVVCGIKAELAAPKAESPECGYIVPNIELPPLCSPKFRP-GPPSDQAQVITKLVEN 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L A IDL L V +GK+ W LY D + I+ DG+++DA A+ A LS +P
Sbjct: 112 ILRN----SAAIDLKDLCVYKGKLVWVLYCDLVCINYDGSIIDACIGALTATLSTLTLPE 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
E V ++ + ++F +PV T
Sbjct: 168 TLYNVETG-----RVSVNSTKRIRFLVKALPVSITF 198
>gi|386002837|ref|YP_005921136.1| Exosome complex exonuclease 2 [Methanosaeta harundinacea 6Ac]
gi|357210893|gb|AET65513.1| Exosome complex exonuclease 2 [Methanosaeta harundinacea 6Ac]
Length = 259
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK + G P A P+KG + + P A P FE E+ EL+ +
Sbjct: 53 LGKTRVLVGVKIQPGEPFADTPNKGVIITNAELVPLASPNFEPGPPNEVGIELARVVDR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
G +GA IDL SL + G+ W ++ID V+ GNL+DA AAL +P+
Sbjct: 112 ---GVRESGA-IDLPSLCIAPGEKVWIVFIDVHVLDDCGNLMDASSLGAIAALMTATVPA 167
Query: 121 VH 122
Sbjct: 168 AQ 169
>gi|405118209|gb|AFR92984.1| opa-interacting protein OIP2 [Cryptococcus neoformans var. grubii
H99]
Length = 272
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T ++ VKAE+G P P +G + +D + P F+ G G+E + S+ L
Sbjct: 94 MGDTTMVCGVKAEIGEPDTETPGEGFIVPNIDLPALSSPKFKPGPPGDE-AQTYSNWLNE 152
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
L+ K+ I LSSL++ GK W LYID + I+ DGN D
Sbjct: 153 LLVSSKT-----IPLSSLLIAPGKAAWVLYIDVVCINYDGNAFD 191
>gi|225559371|gb|EEH07654.1| exosome complex exonuclease RRP45 [Ajellomyces capsulatus G186AR]
Length = 293
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 18/161 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AE+ +P + + + G + V+ + A P +E EL ++L L
Sbjct: 51 LGKTSVVVRISAEVTKPRSERENDGIFTVSVELNDMASPAYETGRQSELESQLVRTLDRI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + GK CW + D ++ SDG L+D+ AI L + +P
Sbjct: 111 I--RRSNA---LDTESLCIAAGKNCWHVRADVHIVDSDGGLVDSCCLAIMTGLLHFRLPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPF 161
V + +PE VP LTK+P
Sbjct: 166 AVVREGRVTVYRPE-------------ERVPSPLNLTKLPL 193
>gi|356552650|ref|XP_003544676.1| PREDICTED: exosome complex component RRP43-like [Glycine max]
Length = 299
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST ++ ++K E+ PS PD+G +AI CSP P +S +LS
Sbjct: 67 IGSTTMLTAIKMEVMTPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDT 126
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + IDL L +V GK W Y+D + +DG L DA + AALS+
Sbjct: 127 ISSSRM---------IDLKELSLVGGKAAWMAYLDIYCLDADGALFDAALISAVAALSHL 177
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPL--IVHN 167
IP+V A +D+ V +S E+ Q + TL +PF L I+H
Sbjct: 178 QIPAV-----AMNDDGKIVLVSGEDG-QKPVNKEKRKLTLRSIPFSLTCILHK 224
>gi|224043308|ref|XP_002196618.1| PREDICTED: exosome complex component RRP43 [Taeniopygia guttata]
Length = 276
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 13/135 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDC-SPTAEPTFEGRGGEELSAE---LSSA 56
+G+T VI VKAEL P+A +KG + V+ S AE G GEE A ++
Sbjct: 53 LGNTTVICGVKAELAAPAADSANKGYIVPNVELPSLCAERFRSGPPGEEAQAASQFIADV 112
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+++ + K L + GK+ W LY D + + DGNLLDA A+ AAL N
Sbjct: 113 IENSQMIVKE---------DLCIANGKLAWVLYCDIICLDYDGNLLDASVFALLAALKNV 163
Query: 117 GIPSVHVAAEAASDE 131
+PSV + E E
Sbjct: 164 QLPSVTINEETGLSE 178
>gi|390601634|gb|EIN11028.1| hypothetical protein PUNSTDRAFT_142893 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 284
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G T ++ VKAE+ P P G + +D CSP +P + LS + +
Sbjct: 71 LGDTTIVCGVKAEIAEPDLNSPSAGFLVPNIDLPAICSPKFKPGPPSEEAQVLSEKFNDI 130
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L L G + L SL + GK CW LY+D I+ DGN DA A+ +AL +T
Sbjct: 131 LT---LSGL------LPLESLCIHPGKSCWVLYVDATCINYDGNAFDAALIAMVSALKDT 181
Query: 117 GIP 119
+P
Sbjct: 182 SLP 184
>gi|239790360|dbj|BAH71746.1| ACYPI003501 [Acyrthosiphon pisum]
Length = 267
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 19/160 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T V+ +KAELG P A PD G + + ++ CS P ++++ L+
Sbjct: 52 IGNTAVVCGIKAELGVPKAEAPDIGYLLVNIELPSLCSKKIRPGIPCDEAMQMTSFLNEV 111
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+C + +DL L + K+ W L D ++ DG++LDA A+ +AL
Sbjct: 112 CNNCKI---------LDLQQLCISVDKLVWVLSCDIYCLNYDGSVLDACLIALLSALQTV 162
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
IP E D++ E E ++ + +PV +T
Sbjct: 163 KIP------EVKYDKETEETTVIENYIPLKVNSLPVSSTF 196
>gi|168031159|ref|XP_001768089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680727|gb|EDQ67161.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 276
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK E+ +P + ++G +AIF + SP +P FE E++ EL +
Sbjct: 52 LGQTRVLAVVKGEITQPYPDRGNEGSLAIFTEFSPMGDPAFEPGRPSEMAVELGRIIDRG 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
L ++ +D SL ++ G+ W + +D ++ + GNL+D
Sbjct: 112 LRESRA-----VDTESLCILSGRSVWSIRVDIHILDNYGNLVD 149
>gi|296081159|emb|CBI18185.3| unnamed protein product [Vitis vinifera]
Length = 407
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 32/163 (19%)
Query: 10 VKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGA 68
V +L +P +P++G ++I+ + SP A+P+FE GR GE + EL + L ++
Sbjct: 4 VTGQLIQPYRDRPNEGTLSIYTEFSPMADPSFEAGRPGE-AAVELGRVIDRGLRESRA-- 60
Query: 69 GAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAA 128
+D+ SL V+ GK+ W + ID +I + GNL+DA A AAL P E
Sbjct: 61 ---VDMESLCVLAGKLVWSIRIDLHIIDNGGNLIDAANIAALAALLTFRRPECSFGGEDG 117
Query: 129 SD---EQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
+ PEV + P PLIVH+L
Sbjct: 118 QELIVHPPEV----------------------REPLPLIVHHL 138
>gi|296812847|ref|XP_002846761.1| exosome complex exonuclease RRP45 [Arthroderma otae CBS 113480]
gi|238842017|gb|EEQ31679.1| exosome complex exonuclease RRP45 [Arthroderma otae CBS 113480]
Length = 292
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AEL P + G + V+ + A P +E EL LS L
Sbjct: 51 LGKTAVLVRISAELTTPRPERDCDGIFTVVVELNDMALPGYETGRPSELEVSLSRTLDKI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + +G++CW++ D ++ DG L+DA AI A L + +
Sbjct: 111 V--RRSNA---LDTESLCIAKGRICWNIRADIHILDCDGGLIDASCLAIMAGLLHFRL-- 163
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDT-SGVPVITTLTKVPF 161
PE + D E F VPV LTK+P
Sbjct: 164 ------------PESTVRDGEVTVFSMEEKVPVSLNLTKIPL 193
>gi|340515703|gb|EGR45955.1| predicted protein [Trichoderma reesei QM6a]
Length = 296
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 5/128 (3%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGK 65
++A V AE+ P A +P G I + P P++E E L+ L+ + +
Sbjct: 59 LLAKVSAEVTVPFADRPFDGIFQITSELGPMVAPSYEVNRPTETEVLLARLLEKTI--RR 116
Query: 66 SGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAA 125
SGA +D SL +V G+ CW + +D V+S+DGNL+D+ A+ AAL + P +
Sbjct: 117 SGA---LDTESLCLVAGQKCWSVRVDLHVLSADGNLIDSACFAVVAALRHFRKPDTSIEG 173
Query: 126 EAASDEQP 133
E + P
Sbjct: 174 ETLTVYTP 181
>gi|242003305|ref|XP_002422688.1| Exosome complex exonuclease RRP45, putative [Pediculus humanus
corporis]
gi|212505510|gb|EEB09950.1| Exosome complex exonuclease RRP45, putative [Pediculus humanus
corporis]
Length = 349
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 27/167 (16%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G + V++ VK E+ P A++P++G + V+ S A P E LS + L C
Sbjct: 50 LGESKVVSQVKCEIQEPQAVRPNEGLFFMNVELSLMASPYIEPGRASNLSTHIQRLLDKC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ IDL SL +V W + ID V++ DG+L+D + AAL++
Sbjct: 110 LYDSKA-----IDLESLCIVAEDKVWAIKIDVHVLNHDGSLVDCASISALAALAHF---- 160
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHN 167
++P+V EE + V +T + P PL +H+
Sbjct: 161 ----------KRPDVTTDGEE--------IKVHSTAERDPIPLTLHH 189
>gi|327400939|ref|YP_004341778.1| exosome complex exonuclease 2 [Archaeoglobus veneficus SNP6]
gi|327316447|gb|AEA47063.1| exosome complex exonuclease 2 [Archaeoglobus veneficus SNP6]
Length = 259
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ VK + G P PDKG + + P A PTFE +E S EL+ +
Sbjct: 53 LGNTQVVVGVKMQPGEPFPDAPDKGIIITNAELVPLASPTFEPGPPDENSIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
+ ++ +DL+ L + EG+ W ++ID + DGNL+D
Sbjct: 113 IRESEA-----VDLTKLCIEEGEKVWLIFIDIHALDDDGNLMD 150
>gi|124027457|ref|YP_001012777.1| exosome complex RNA-binding protein Rrp42 [Hyperthermus butylicus
DSM 5456]
gi|123978151|gb|ABM80432.1| RNase PH-related exoribonuclease [Hyperthermus butylicus DSM 5456]
Length = 328
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK ++ P P++ + + + P A PTFE +E + EL+ +
Sbjct: 58 LGQTVVLAGVKTDIVAPFPDTPNEAVLVVHAEFVPLASPTFEPGPPDENAIELARVIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ A L LV+ GK W LY+D +++ DGNL DA A AAL T +P+
Sbjct: 118 LREIKAVA-----LDKLVLEPGKHVWRLYVDLYILNHDGNLFDASMLAAMAALMTTRLPA 172
>gi|392568344|gb|EIW61518.1| hypothetical protein TRAVEDRAFT_35012 [Trametes versicolor
FP-101664 SS1]
Length = 287
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+ VKAE+ P +P+ G + +D P F+ + + LS L
Sbjct: 69 LGSTTVVCGVKAEIAEPELDRPEHGFLVPNLDLPAICSPKFKPGPPTDEAQVLSDRLNEV 128
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ SG + SL + GK W LY+D I+ DGN DA A+ AAL +T +P
Sbjct: 129 LVS--SGV---VSTKSLCIEPGKAVWVLYVDATCINYDGNAFDATLLAMVAALKSTTLPK 183
>gi|170086802|ref|XP_001874624.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649824|gb|EDR14065.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 345
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G T+V+A+ K E+ D G+V V CSP A P E+L ++++ + L
Sbjct: 64 GGTEVLAAAKVEVESVEEGGVDAGRVVCTVSCSPAAYPQLATAALEDLQYDMTTIVHQTL 123
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
+ + +L ++ GK W L +D +V++ GN+ DAL A +AAL +T IP
Sbjct: 124 ------SHPSLHPKNLRILPGKKSWLLNLDLIVLADSGNIYDALFMAARAALWDTKIPRT 177
Query: 122 H 122
Sbjct: 178 R 178
>gi|313870783|gb|ADR82276.1| exosome complex exonuclease [Blumeria graminis f. sp. tritici]
Length = 303
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T + A V AE+ +P +P +G I + SP E L +S L+
Sbjct: 51 LGGTRIHAHVSAEVTQPYPDRPYEGLFTIVTELSPMTHAHLEPGRNSPLEMLVSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL ++ G+ CW + +D V+S +GNL+DA A+ AAL++ P
Sbjct: 111 I--RRSGA---LDPESLCLLAGQTCWSIRVDVHVLSVEGNLIDAASIAVIAALAHFKRPE 165
Query: 121 VH 122
+
Sbjct: 166 TN 167
>gi|240282302|gb|EER45805.1| exosome complex exonuclease RRP45 [Ajellomyces capsulatus H143]
Length = 293
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 18/161 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AE+ +P + + + G + ++ + A P +E EL ++L L
Sbjct: 51 LGKTSVVVRISAEVTKPRSERENDGIFTVSMELNDMASPAYETGRQSELESQLVRTLDRI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + GK CW + D V+ SDG L+D+ AI L + +P
Sbjct: 111 I--RRSNA---LDTESLCIAAGKNCWHVRADVHVVDSDGGLVDSCCLAIMTGLLHFRLPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPF 161
V + +PE VP LTK+P
Sbjct: 166 AVVREGRVTVYRPE-------------ERVPSPLNLTKLPL 193
>gi|254169471|ref|ZP_04876288.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
gi|197621577|gb|EDY34175.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
Length = 210
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 7/118 (5%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLL 62
T V+ VK E G P P+ G + + +P A PTFE G GEE + EL+ + +
Sbjct: 1 TRVLVGVKIEPGTPFPDTPNMGILTTNAELAPLASPTFEPGPPGEE-AIELARVVDRGIR 59
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
G + IDL LV+ EG+ W ++ID V+ DGNL DA G AAL+N +P+
Sbjct: 60 EGHA-----IDLEKLVIEEGEKVWIVFIDIHVLDYDGNLFDAAGYGALAALTNAIVPA 112
>gi|336381696|gb|EGO22847.1| hypothetical protein SERLADRAFT_471294 [Serpula lacrymans var.
lacrymans S7.9]
Length = 334
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 13/160 (8%)
Query: 2 GSTDVIASVKAELGRPSAMQ-PDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G T+++A+VK E+ + + D G+V V CSP A P ++L +L+S L
Sbjct: 62 GGTEILAAVKLEVETVADGEGVDGGRVVGTVSCSPAAYPHLPSGALDDLQHDLTSVLHDT 121
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP- 119
+ + + +L ++ GK W L +D +V+S DGN+ DAL A +AAL +T +P
Sbjct: 122 V------SHPSLRPKNLGIIPGKKSWLLNLDVIVLSDDGNVCDALFMAARAALWDTKVPR 175
Query: 120 --SVHVAAEAASDE---QPEVDISDEEFLQFDTSGVPVIT 154
SV A+ A + ++++ +E FDT +T
Sbjct: 176 TRSVEYQAKKAGNNAEGNRDIEMDEEGKSGFDTRITKKVT 215
>gi|198471344|ref|XP_001355587.2| GA21908 [Drosophila pseudoobscura pseudoobscura]
gi|198145876|gb|EAL32646.2| GA21908 [Drosophila pseudoobscura pseudoobscura]
Length = 398
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V ++G P+ +P++GK+ ++V + + + ++ S L+S L+
Sbjct: 56 LGDTKVMAQVTCDMGTPTTSRPNEGKLQLYVTLAGVSYLDSVQKTHDKRSLTLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL SL V W + +D V++ DGNL DA A+ AAL + P
Sbjct: 116 FRTSRC-----VDLESLCVASELHVWCIRVDVNVLNHDGNLYDASTVAVLAALMHFRRPD 170
Query: 121 VHVA-AEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPF 161
V E + + E D+ FL + S I T PF
Sbjct: 171 VTFTDGELRTYTEKERDMIPLLFLHYPVSVTYCIYTSNFQPF 212
>gi|224054532|ref|XP_002298307.1| predicted protein [Populus trichocarpa]
gi|222845565|gb|EEE83112.1| predicted protein [Populus trichocarpa]
Length = 382
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 26/169 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V +L +P + ++G + IF + SP A+P+FE GR GE + EL +
Sbjct: 57 LGQTHVMGFVTGQLVQPYQDRRNEGMLLIFTEFSPMADPSFEPGRPGES-AVELGRIVDR 115
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D SL V+ GK+ W + ID ++ + GNL+DA A AAL P
Sbjct: 116 GLRESRA-----VDTESLCVLSGKLVWAIRIDLHILDNGGNLVDAANIAALAALLTFRRP 170
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
+ D+ EV + E + P PLIVH+L
Sbjct: 171 ECTLGG----DDGQEVTVHPPE---------------EREPLPLIVHHL 200
>gi|222623035|gb|EEE57167.1| hypothetical protein OsJ_07096 [Oryza sativa Japonica Group]
Length = 417
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 17/168 (10%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLL 62
T V+ A+L +P +P++G +AIF + SP A+P FE GR GE + EL + L
Sbjct: 65 TRVMGYATAQLVQPYKDRPNQGTLAIFTEFSPIADPAFEPGRPGES-AIELGRVVDRGLR 123
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDG--NLLDALGAAIKAALSNTGIPS 120
++ +D+ SL VV GK W + +D ++ + G N+ DA+ +++ + +
Sbjct: 124 ESRA-----VDMESLCVVAGKHVWSVRVDLHILDNGGELNVPDAMVLSLRNLIDAA---N 175
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
+ A ++ +PE + E D V V + P PL +H+L
Sbjct: 176 IAALAALSTFRRPECTVGGE-----DGQQVTVHDPEVRDPLPLTIHHL 218
>gi|195168570|ref|XP_002025104.1| GL26867 [Drosophila persimilis]
gi|194108549|gb|EDW30592.1| GL26867 [Drosophila persimilis]
Length = 398
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V ++G P+ +P++GK+ ++V + + + ++ S L+S L+
Sbjct: 56 LGDTKVMAQVTCDMGTPTTSRPNEGKLQLYVTLAGVSYLDSVQKTHDKRSLTLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL SL V W + +D V++ DGNL DA A+ AAL + P
Sbjct: 116 FRTSRC-----VDLESLCVASELHVWCIRVDVNVLNHDGNLYDASTVAVLAALMHFRRPD 170
Query: 121 VHVA-AEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPF 161
V E + + E D+ FL + S I T PF
Sbjct: 171 VTFTDGELRTYTEKERDMIPLLFLHYPVSVTYCIYTSNFQPF 212
>gi|126327460|ref|XP_001368047.1| PREDICTED: exosome complex component RRP43-like [Monodelphis
domestica]
Length = 276
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VK E P +KG + VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKGEFAAPPVDSLNKGYIVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISHGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
+V + E EV++ + L T P+ T+
Sbjct: 167 AVIINEETG---LAEVNLKKKSHLNIRTH--PIATSF 198
>gi|83283957|gb|ABC01886.1| 3'-5'-exoribonuclease/RNA binding protein-like protein [Solanum
tuberosum]
Length = 314
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST ++A++K E+ P+ PD+G +AI CSP P +S +LS
Sbjct: 67 IGSTTMLAAIKMEVMTPTVECPDEGSIAIEFHMPPICSPLVRPGRPAEAASVISKQLSDT 126
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + IDL L +V GK W Y+D + +DG L D + AA S+
Sbjct: 127 IL---------SSGMIDLKELCLVGGKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHL 177
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-----TLTKVPFPL--IVHN 167
IP V + ++ + + E+ ++ PV T L +PF L I+H
Sbjct: 178 NIPVVSL------NDDGRIVLVSEDTVRLKLEKEPVNTEKRKLKLNSLPFSLTCILHK 229
>gi|315050464|ref|XP_003174606.1| exosome complex exonuclease RRP45 [Arthroderma gypseum CBS 118893]
gi|311339921|gb|EFQ99123.1| exosome complex exonuclease RRP45 [Arthroderma gypseum CBS 118893]
Length = 292
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AEL P + G + V+ + A P +E EL LS L
Sbjct: 51 LGKTTVLVRISAELTTPRPERDCDGIFTVVVELNDMALPGYETGRPSELEVSLSRTLDKI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + +G +CW++ D ++ DG L+DA AI A L + +
Sbjct: 111 V--RRSNA---LDTESLCISKGMICWNVRADIHILDCDGGLVDASCLAIMAGLLHFRL-- 163
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDT-SGVPVITTLTKVPF 161
PE + D E F T VPV LTK+P
Sbjct: 164 ------------PESTVRDGEVTVFTTEEKVPVQLNLTKIPL 193
>gi|126654493|ref|XP_001388417.1| exoribonuclease PH [Cryptosporidium parvum Iowa II]
gi|126117122|gb|EAZ51222.1| exoribonuclease PH, putative [Cryptosporidium parvum Iowa II]
Length = 295
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 65 KSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVA 124
K DLS L ++E K+ W++YID ++S GN++D + AI AL T IP +HV+
Sbjct: 123 KDMCFKNFDLSKLTILENKLYWNIYIDATILSFGGNMVDWVTIAIHTALRTTRIPKIHVS 182
Query: 125 AEAASDEQPE 134
++ E +
Sbjct: 183 PSISTKENNK 192
>gi|261190048|ref|XP_002621434.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
gi|239591262|gb|EEQ73843.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
gi|239606325|gb|EEQ83312.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Ajellomyces dermatitidis ER-3]
gi|327353102|gb|EGE81959.1| exosome complex exonuclease RRP45 [Ajellomyces dermatitidis ATCC
18188]
Length = 293
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 18/161 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AE+ +P + + G + V+ + A P +E EL +L L
Sbjct: 51 LGKTSVVVRISAEVTKPRPERENDGIFTVSVELNDMASPAYETGRQSELETQLVRTLDRI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + GK CW + D V+ SDG L+D+ AI L + +P
Sbjct: 111 I--RRSNA---LDTESLCIAAGKNCWHVRADVHVVDSDGGLVDSCCLAIMTGLLHFRLPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPF 161
V + +PE VP LTK+P
Sbjct: 166 AVVRDGRVTVYRPE-------------ERVPSPLNLTKLPL 193
>gi|347967668|ref|XP_312616.5| AGAP002348-PA [Anopheles gambiae str. PEST]
gi|333468355|gb|EAA07626.5| AGAP002348-PA [Anopheles gambiae str. PEST]
Length = 439
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T +A + E+ P A +P++G + + V+ P A P F+G + +L+ L+
Sbjct: 50 LGETRALARITCEVVEPKATRPNEGMLFLNVELGPMAAPHFDGGRQSDECVQLNRILERA 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L +DL SL +V + W L +D V++ +GN +D A AL++ P
Sbjct: 110 LKDSNC-----VDLESLCLVSEEKVWKLRVDVTVLNHEGNAIDCCSIAALTALAHFKRPD 164
Query: 121 VHVAAE 126
+ V E
Sbjct: 165 ITVDGE 170
>gi|241608403|ref|XP_002405972.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp43, putative
[Ixodes scapularis]
gi|215500728|gb|EEC10222.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp43, putative
[Ixodes scapularis]
Length = 425
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 7/120 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A V +E+ P +P++G++ + ++ SP A P FE GR G + E++ L+
Sbjct: 51 LGETKVLAQVSSEVIVPKPNRPNEGELFVNLELSPMAAPHFEAGRLG-DFGVEIARLLER 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
C+ +DL SL +V + W L +D V++ GN+ + A AAL + P
Sbjct: 110 CVRDSHC-----VDLESLCIVAREKVWSLRVDVQVLNHRGNIAECASVATVAALLHFRRP 164
>gi|410947312|ref|XP_003980394.1| PREDICTED: exosome complex component RRP43 [Felis catus]
Length = 257
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLSWVLYCDIICLDYDGNILDACTFALLAALKN 162
>gi|409050427|gb|EKM59904.1| hypothetical protein PHACADRAFT_181840 [Phanerochaete carnosa
HHB-10118-sp]
Length = 287
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VKAE+ P P+ G + +D P F + + LS L
Sbjct: 72 LGDTTVVCGVKAEIAEPELDSPEDGFLVPNLDLPAICSPKFRPGPPSDEAQVLSDRLNET 131
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L+ + I SL + K W LY+D I+ DGN LDA A+ AAL NT +P
Sbjct: 132 LV-----STGVISTRSLCIESRKAVWVLYVDATCINYDGNALDATLVAMIAALQNTRLP 185
>gi|171185833|ref|YP_001794752.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum neutrophilum
V24Sta]
gi|170935045|gb|ACB40306.1| 3' exoribonuclease [Pyrobaculum neutrophilum V24Sta]
Length = 273
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 19/163 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSA---- 56
+G T V+A VK LG+P PD+G + + + P A P E +E + EL+
Sbjct: 59 LGRTHVVAGVKVGLGQPFPDAPDEGVLVVSAEVLPHASPYTEVGPPDESAIELARVVDRG 118
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++HC +D L V EG + L++D VI+ DGNL+DA A AAL NT
Sbjct: 119 IRHC---------GYVDFKKLAV-EGGKAYILWVDLYVINDDGNLVDAANLAAVAALKNT 168
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
+P+V ++ ++D +++ L D + P+ ++ K+
Sbjct: 169 QLPAV-----VKEEQGVKLDRNNKTPLPVDLNKAPIAVSIGKI 206
>gi|291000993|ref|XP_002683063.1| exosome complex exonuclease RRP43 [Naegleria gruberi]
gi|284096692|gb|EFC50319.1| exosome complex exonuclease RRP43 [Naegleria gruberi]
Length = 279
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 73/167 (43%), Gaps = 17/167 (10%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G+T V+ +KAE+ P+ P GKV I D G EE++ E S +Q L
Sbjct: 59 GNTSVVCGIKAEVMIPTEDAPKNGKVVISFDFPSICAADVTG-NWEEIN-EKKSVIQQRL 116
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
G +DLS L + EGK W LY D + +DGN+ DA A+ AL N +P+
Sbjct: 117 AGIFYNCNV-MDLSQLCIEEGKAVWVLYADLYCLENDGNVFDAALIALLTALKNVSLPTC 175
Query: 122 HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
+ + DE + + S + + L P PL NL
Sbjct: 176 QITKD------------DEAIVTNENSNIKL--QLDHYPIPLSFGNL 208
>gi|452211131|ref|YP_007491245.1| Exosome complex exonuclease 2 [Methanosarcina mazei Tuc01]
gi|452101033|gb|AGF97973.1| Exosome complex exonuclease 2 [Methanosarcina mazei Tuc01]
Length = 263
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ VK + G P D+G + ++ +P A P FE E + E++ +
Sbjct: 52 LGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREDAIEMARVVDRG 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA ID+ L + G+ W ++ID ++++DGN++DA A AAL T +P+
Sbjct: 112 I--RESGA---IDIKKLCITVGESVWIVFIDVHILNNDGNIIDASCLAAIAALMTTMVPN 166
>gi|320033639|gb|EFW15586.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Coccidioides posadasii str. Silveira]
Length = 265
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 19/168 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI + AE+ P + G + ++ + A P FE +L +LS L
Sbjct: 51 LGRTSVIVRISAEVTAPRPERDSDGIFTVSIELNDMALPGFETGRQSDLETQLSRTLDKI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + +G CW++ D ++ +DG L+D AI A L + IP
Sbjct: 111 V--RRSNA---LDTESLCIAKGLSCWNVRADVHIVDADGGLVDICCLAIMAGLLHFRIPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V+ + PE VPV LTKVP I NL
Sbjct: 166 STVSDGKVTVYSPE-------------EKVPVPLNLTKVPLS-ITFNL 199
>gi|21228726|ref|NP_634648.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina mazei
Go1]
gi|29336794|sp|Q8PTT7.1|ECX2_METMA RecName: Full=Probable exosome complex exonuclease 2
gi|20907235|gb|AAM32320.1| Ribonuclease [Methanosarcina mazei Go1]
Length = 266
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ VK + G P D+G + ++ +P A P FE E + E++ +
Sbjct: 55 LGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREDAIEMARVVDRG 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA ID+ L + G+ W ++ID ++++DGN++DA A AAL T +P+
Sbjct: 115 I--RESGA---IDIKKLCITVGESVWIVFIDVHILNNDGNIIDASCLAAIAALMTTMVPN 169
>gi|452843608|gb|EME45543.1| hypothetical protein DOTSEDRAFT_71300 [Dothistroma septosporum
NZE10]
Length = 299
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ ++ AEL P + G I + SP A P FE ++ LS L+
Sbjct: 51 LGKTRVMVTISAELVTPYPDRKFDGVFTISTELSPIASPAFEVGRQDQTEVLLSRILEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL ++ G CW + D ++ DGN++DA A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCIIAGAKCWHIRADIHILDHDGNIVDASCIALVAALMHFRRPD 165
Query: 121 VHVAAEAAS 129
+ E +
Sbjct: 166 HEIHGEEVT 174
>gi|395329798|gb|EJF62183.1| ribosomal protein S5 domain 2-like protein [Dichomitus squalens
LYAD-421 SS1]
Length = 291
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+ VKAE+ P +P G + +D P F+ + + +S L
Sbjct: 73 LGSTTVVCGVKAEIAEPELDKPKDGFLVPNLDLPAICSPKFKPGPPTDEAQVISDRLNDV 132
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ SG + SSL + K W LY+D I+ DGN DA A+ AAL NT +P
Sbjct: 133 LIS--SGV---VSTSSLCIEPSKSAWVLYVDATCINYDGNAFDATLLAMVAALKNTRLPK 187
Query: 121 VH 122
Sbjct: 188 AR 189
>gi|20090627|ref|NP_616702.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina
acetivorans C2A]
gi|29336812|sp|Q8TGX5.1|ECX2_METAC RecName: Full=Probable exosome complex exonuclease 2
gi|19915669|gb|AAM05182.1| tRNA nucleotidyltransferase [Methanosarcina acetivorans C2A]
Length = 266
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ VK + G P D+G + ++ +P A P FE E + E++ +
Sbjct: 55 LGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRG 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA ID+ L + G+ W ++ID V++ DGN++DA A AAL T +P+
Sbjct: 115 I--RESGA---IDIKKLCITVGESVWIVFIDVHVLNDDGNIIDASCLAAIAALMTTMVPN 169
>gi|154301511|ref|XP_001551168.1| hypothetical protein BC1G_10425 [Botryotinia fuckeliana B05.10]
Length = 244
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 6 VIASVKAELGRPSAMQPDK---GKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLL 62
V+ ++ AE+ P PD+ G I + SP A P FE E LS L+ L
Sbjct: 6 VLVNITAEVTSPF---PDRLFDGIFTITTELSPMASPAFETNRPTEQEVLLSRLLEKTL- 61
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVH 122
A +D SL ++ G+ CW + D ++S DGNL+DA AI AAL + P
Sbjct: 62 ----RRSAALDTESLCLIAGQKCWSVRADVHILSHDGNLIDASCIAIIAALQHFRKPDTS 117
Query: 123 VAAEAAS 129
E +
Sbjct: 118 TEGETVT 124
>gi|328767537|gb|EGF77586.1| hypothetical protein BATDEDRAFT_91577 [Batrachochytrium
dendrobatidis JAM81]
Length = 276
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++++V E+ RPS+ P G + + SP A P FE E +S L+
Sbjct: 52 LGKTRIMSTVSCEIVRPSSGNPSDGVIHFNTEFSPMASPAFEVDSTSENEILISRMLEKA 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + +D L +V G+ W + +D V++ +GN+LD A +L + P
Sbjct: 112 LRRARV-----VDTEGLCIVAGEKVWAIRVDIRVLNHEGNILDCACIAAMCSLLHFKRPD 166
Query: 121 VHVAAE 126
V V E
Sbjct: 167 VTVIGE 172
>gi|115485229|ref|NP_001067758.1| Os11g0311300 [Oryza sativa Japonica Group]
gi|113644980|dbj|BAF28121.1| Os11g0311300, partial [Oryza sativa Japonica Group]
Length = 300
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++AS+K E+ PS PD+G +A+ P P E++ +S L+
Sbjct: 64 LGDTAMLASIKLEVMSPSGEAPDEGSIAVEFHMPPICSPLVRPGRPAEVAPVISKNLEDI 123
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ + ++L L ++ GK W Y+D +++DG+L DA + AA ++ IP
Sbjct: 124 LM-----SSGMLNLKELCLISGKASWLAYLDVYCLNADGSLFDAALISAVAAFTHLEIPL 178
Query: 121 VHV 123
V V
Sbjct: 179 VSV 181
>gi|349805879|gb|AEQ18412.1| hypothetical protein [Hymenochirus curtipes]
Length = 111
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAEL 53
+G TDV+ VKAE+G P +P +G + FVDCS A P FEGR GEEL E+
Sbjct: 53 IGHTDVLVGVKAEMGTPKLERPGEGYLEFFVDCSANATPEFEGR-GEELGTEI 104
>gi|453085196|gb|EMF13239.1| exoribonuclease [Mycosphaerella populorum SO2202]
Length = 299
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ ++ AE+ P + G I + SP A P FE ++ LS L+
Sbjct: 51 IGKTRVLVNISAEVVVPYVDRKFDGVFTISTELSPIASPAFEVGRQDQTEIILSRILEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ C+ + D V+ DGNL+DA A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCIVAGQKCFHIRADIHVLDHDGNLVDASCLALVAALMHFRRPD 165
Query: 121 VHVAAEAAS 129
V V E +
Sbjct: 166 VEVHGEEVT 174
>gi|148703326|gb|EDL35273.1| exosome component 8, isoform CRA_b [Mus musculus]
Length = 212
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 65/145 (44%), Gaps = 12/145 (8%)
Query: 13 ELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGAGAG 71
E P PD+G V VD P F G GEE A+++S +
Sbjct: 1 EFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQF----IADVVDNSQV 54
Query: 72 IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDE 131
I L + GK+ W LY D + + DGN+LDA A+ AAL N +P V + E A
Sbjct: 55 IKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETA--- 111
Query: 132 QPEVDISDEEFLQFDTSGVPVITTL 156
EV++ + +L T+ PV T+
Sbjct: 112 LAEVNLKKKSYLNVRTN--PVATSF 134
>gi|145352406|ref|XP_001420540.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580774|gb|ABO98833.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 191
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 71 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVA--AEAA 128
GIDL SL V G+ W L +D G++LDAL ++AAL++T IP V VA E
Sbjct: 8 GIDLKSLCVKPGRARWTLTVDCACACDRGSMLDALSVGVRAALADTKIPKVTVAGVGEDG 67
Query: 129 SDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
+ + E+D E + D S V+ T TK+
Sbjct: 68 AGGELEIDDDPEACSRVDVSRCGVVVTTTKI 98
>gi|397565050|gb|EJK44452.1| hypothetical protein THAOC_37004 [Thalassiosira oceanica]
Length = 344
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 20/138 (14%)
Query: 3 STDVIASVKAELGRPSAMQPDKGKVAIFVDCS--------------PTAEPTFEGRGGEE 48
+T+V+ SVKA+L PS +P +G + + VD S A + R E
Sbjct: 63 TTEVVCSVKADLVHPSPSKPSEGMIGLNVDLSLCGGGGSVIGVSSSVGAAGQSQRRQQRE 122
Query: 49 LSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAA 108
++++S LQ +L ++ L V GK W L +D +++ DG +LD A
Sbjct: 123 EESQIASLLQRLVLP------HALNYEQLAVWPGKYVWRLAVDLVILRCDGCVLDTSSIA 176
Query: 109 IKAALSNTGIPSVHVAAE 126
++ AL NT +P V E
Sbjct: 177 LREALRNTKLPKVQAVME 194
>gi|303312521|ref|XP_003066272.1| 3' exoribonuclease family, domain 1 containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240105934|gb|EER24127.1| 3' exoribonuclease family, domain 1 containing protein
[Coccidioides posadasii C735 delta SOWgp]
Length = 292
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 19/168 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI + AE+ P + G + ++ + A P FE +L +LS L
Sbjct: 51 LGRTSVIVRISAEVTAPRPERDSDGIFTVSIELNDMALPGFETGRQSDLETQLSRTLDKI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + +G CW++ D ++ +DG L+D AI A L + IP
Sbjct: 111 V--RRSNA---LDTESLCIAKGLSCWNVRADVHIVDADGGLVDICCLAIMAGLLHFRIPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V+ + PE VPV LTKVP I NL
Sbjct: 166 STVSDGKVTVYSPE-------------EKVPVPLNLTKVPLS-ITFNL 199
>gi|426192955|gb|EKV42890.1| hypothetical protein AGABI2DRAFT_228615 [Agaricus bisporus var.
bisporus H97]
Length = 283
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 70/162 (43%), Gaps = 19/162 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T VIA V A++ +P+ +P +G ++I + SP A +E GR E ++ L
Sbjct: 50 LGKTMVIAQVDAKMVKPTPERPFEGSISIHSEISPMASSEYEAGRAASEEEVMINRMLDK 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +S A ID SL ++ G W L I +S GN+LD A AL + P
Sbjct: 110 VL--RRSDA---IDKESLCILAGHRVWHLRITFHFLSDAGNMLDCACLAGIVALRHFRRP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPF 161
V V I DE + T PV + PF
Sbjct: 165 EVEV-------------IGDEVIVHPPTERAPVPLAIHHTPF 193
>gi|212721556|ref|NP_001131768.1| exosome complex exonuclease RRP43 [Zea mays]
gi|194692484|gb|ACF80326.1| unknown [Zea mays]
gi|195623954|gb|ACG33807.1| exosome complex exonuclease RRP43 [Zea mays]
gi|414869688|tpg|DAA48245.1| TPA: exosome complex exonuclease RRP43 [Zea mays]
Length = 306
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ASVK E+ P A PD+G VA+ P P +++ +S AL+
Sbjct: 70 LGDTAMLASVKLEVMSPPAEHPDEGSVAVEFHMPPICSPLVRPGRPTDVAPVISKALEDV 129
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + ++L L ++ GK W Y+D +++DG+L DA + AA ++ IP
Sbjct: 130 L-----TSSGMLNLKDLCLITGKASWLAYLDIYCLNADGSLFDAALISAVAAFTHLEIPL 184
Query: 121 VHV 123
V V
Sbjct: 185 VSV 187
>gi|221484017|gb|EEE22321.1| exosome complex exonuclease, putative [Toxoplasma gondii GT1]
gi|221505289|gb|EEE30943.1| exosome complex exonuclease, putative [Toxoplasma gondii VEG]
Length = 291
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 25/131 (19%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPTAE----------PTF---EGRGGEELSAE 52
V+ V +L RP+A PD+G+V + VDCS +F EG L A
Sbjct: 92 VLCGVSMQLARPTA-APDEGEVFLTVDCSAALGVGGVGGGVALESFGLGEGSSNSSLQAL 150
Query: 53 LSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAA 112
LS + + +D L +V GK+ W +++D +V+ + G LLDA+ A+ AA
Sbjct: 151 LSDMVL-----------SAVDKKKLCLVPGKLIWRVFVDCMVLKAGGCLLDAVSLAVHAA 199
Query: 113 LSNTGIPSVHV 123
L T +P V V
Sbjct: 200 LRTTVLPCVFV 210
>gi|237836521|ref|XP_002367558.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
gi|211965222|gb|EEB00418.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
Length = 297
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 25/131 (19%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPTAE----------PTF---EGRGGEELSAE 52
V+ V +L RP+A PD+G+V + VDCS +F EG L A
Sbjct: 98 VLCGVSMQLARPTA-APDEGEVFLTVDCSAALGVGGVGGGVALESFGLGEGSSNSSLQAL 156
Query: 53 LSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAA 112
LS + + +D L +V GK+ W +++D +V+ + G LLDA+ A+ AA
Sbjct: 157 LSDMVL-----------SAVDKKKLCLVPGKLIWRVFVDCMVLKAGGCLLDAVSLAVHAA 205
Query: 113 LSNTGIPSVHV 123
L T +P V V
Sbjct: 206 LRTTVLPCVFV 216
>gi|409075918|gb|EKM76293.1| hypothetical protein AGABI1DRAFT_122693 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 283
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 70/162 (43%), Gaps = 19/162 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T VIA V A++ +P+ +P +G ++I + SP A +E GR E ++ L
Sbjct: 50 LGKTMVIAQVDAKMVKPTPERPFEGSISIHSEISPMASSEYEAGRAASEEEVMINRMLDK 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +S A ID SL ++ G W L I +S GN+LD A AL + P
Sbjct: 110 VL--RRSDA---IDKESLCILAGHRVWHLRITFHFLSDAGNMLDCACLAGIVALRHFRRP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPF 161
V V I DE + T PV + PF
Sbjct: 165 EVEV-------------IGDEVIVHPPTERAPVPLAIHHTPF 193
>gi|119192860|ref|XP_001247036.1| hypothetical protein CIMG_00807 [Coccidioides immitis RS]
gi|392863730|gb|EAS35502.2| exosome complex endonuclease 2/ribosomal RNA processing protein
[Coccidioides immitis RS]
Length = 292
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 19/168 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI + AE+ P + G + ++ + A P FE +L +LS L
Sbjct: 51 LGRTTVIVRISAEVTAPRPERDSDGIFTVSIELNDMALPGFETGRQSDLETQLSRTLDKI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + +G CW++ D ++ +DG L+D AI A L + IP
Sbjct: 111 V--RRSNA---LDTESLCIAKGLSCWNVRADVHIVDADGGLVDICCLAIMAGLLHFRIPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V+ + PE VPV LTKVP I NL
Sbjct: 166 STVSDGKVTVYSPE-------------EKVPVPLNLTKVPLS-ITFNL 199
>gi|387015828|gb|AFJ50033.1| Exosome complex exonuclease RRP45-like [Crotalus adamanteus]
Length = 434
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ SP A P FE EL +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKPNRATEGILFFNLELSPMASPAFEPGRQSELLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K +D SL VV G+ W + +D +++ +GN++DA A AL + P
Sbjct: 110 LRNSKC-----VDTESLCVVAGEKVWQIRVDLHLLNHNGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V E + PE
Sbjct: 165 VSVQGEEVTLYTPE 178
>gi|108864299|gb|ABG22460.1| 3' exoribonuclease family domain 1-containing protein, putative,
expressed [Oryza sativa Japonica Group]
gi|215706902|dbj|BAG93362.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215736842|dbj|BAG95771.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218185641|gb|EEC68068.1| hypothetical protein OsI_35924 [Oryza sativa Indica Group]
gi|222615895|gb|EEE52027.1| hypothetical protein OsJ_33746 [Oryza sativa Japonica Group]
Length = 306
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++AS+K E+ PS PD+G +A+ P P E++ +S L+
Sbjct: 70 LGDTAMLASIKLEVMSPSGEAPDEGSIAVEFHMPPICSPLVRPGRPAEVAPVISKNLEDI 129
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ + ++L L ++ GK W Y+D +++DG+L DA + AA ++ IP
Sbjct: 130 LM-----SSGMLNLKELCLISGKASWLAYLDVYCLNADGSLFDAALISAVAAFTHLEIPL 184
Query: 121 VHV 123
V V
Sbjct: 185 VSV 187
>gi|402592869|gb|EJW86796.1| hypothetical protein WUBG_02293 [Wuchereria bancrofti]
Length = 393
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V L PS + + G + + VD SP A P +E EL L+
Sbjct: 50 LGETKVLAQVSCSLVEPSTTRGNMGTIEVQVDMSPMASPDYEDGRLNSKGLELMRILE-- 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LL G +DL SL + K W + ID V++SDG+L+D A AL++ P
Sbjct: 108 LLYRDCGV---VDLESLCLRTFKQVWQIRIDVHVLASDGSLVDCACIASSTALAHFRRPD 164
Query: 121 VHV 123
V V
Sbjct: 165 VSV 167
>gi|363729290|ref|XP_003640625.1| PREDICTED: exosome complex component RRP43-like [Gallus gallus]
Length = 276
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAE---LSSA 56
+G+T VI VKAEL P+ +KG + V+ F G GEE A ++
Sbjct: 53 LGNTTVICGVKAELAAPALDSANKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADV 112
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+++ + K L + +GK+ W LY D + + DGN+LDA A+ AAL N
Sbjct: 113 IENSQVIAKE---------DLCIADGKLAWVLYCDIICLDYDGNILDASTFALLAALKNV 163
Query: 117 GIPSVHVAAEAASDE 131
+PSV + E E
Sbjct: 164 QLPSVTINEETGLSE 178
>gi|170091308|ref|XP_001876876.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648369|gb|EDR12612.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 276
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T V+ VKAE+ P + +G + +D CSP +P + LS L+ A
Sbjct: 58 LGNTTVVCGVKAEIAEPELDEGVRGFLVPNLDLPAMCSPRFKPGPPSEEAQVLSDRLNDA 117
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L A + L+SL + K W LY+D + I+ DGN+ DA A+ AL NT
Sbjct: 118 LV---------ASNILPLTSLSIHPNKAAWVLYVDAICINYDGNVFDAALIAMVEALRNT 168
Query: 117 GIP 119
+P
Sbjct: 169 QLP 171
>gi|303279202|ref|XP_003058894.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460054|gb|EEH57349.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 292
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 7/102 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A A+L P + ++G V I V+ SP A P FE GR GEE S EL+ L+
Sbjct: 55 LGKTRVLAVTSAKLEPPGGGRSNEGSVTINVEFSPMASPNFEPGRPGEEAS-ELAVVLER 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNL 101
+ ++GA +D+ SL V+ G+ W++ +D V+ + GN+
Sbjct: 114 AI--RETGA---VDVESLCVLAGRRVWNIRVDVHVLDACGNI 150
>gi|389739495|gb|EIM80688.1| ribosomal protein S5 domain 2-like protein [Stereum hirsutum
FP-91666 SS1]
Length = 286
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 20/162 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
G T V+A V A++ RP+ +P +G++ I + SP A +E GR +E A LS L
Sbjct: 50 FGKTRVLAQVDAKMIRPTPERPYEGQILIHSEISPMASSEYEPGRPSDEEVA-LSRMLDK 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +S A +D L ++ G+ W L I ++ GNLLD A AAL + P
Sbjct: 109 VL--RRSDA---VDKEGLCILAGQRVWQLRITIHCLADAGNLLDCACLAGIAALKHFRRP 163
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPF 161
V V + DE + +S PV +L PF
Sbjct: 164 EVEV-------------VGDEVTVHPPSSRAPVPLSLHHTPF 192
>gi|374724588|gb|EHR76668.1| exosome complex component RRP42 [uncultured marine group II
euryarchaeote]
Length = 261
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 19/159 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V A VK EL P +P +G + + P A +E S EL +
Sbjct: 52 MGGTIVYAGVKFELRTPWPDRPAQGSLMCGAELRPVAHRKYEPGPPSPQSIELGRVVDRG 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SG ID+ SL +V G+ W + ID V+S GN+ DA G A AAL +P+
Sbjct: 112 IR--ESGC---IDMESLCIVPGEKVWGVMIDIHVLSDGGNIFDACGLAAIAALRTAVVPA 166
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
D+ ++ L+ G P++ + T+V
Sbjct: 167 ------------QRFDVGEDYTLK--VKGTPIMASFTRV 191
>gi|325184014|emb|CCA18471.1| exosome complex exonuclease RRP45like protein putati [Albugo
laibachii Nc14]
Length = 473
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A+V E+ P +P +G VD SP A FE LS EL+ +
Sbjct: 58 LGNTRVLANVHGEIVTPFPDRPTEGFFNTSVDLSPMASQNFETGRPSSLSIELAKMIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + D +L ++ G+ W +Y + VI DGNL DA+ A AAL + P
Sbjct: 118 IRDCR-----AFDTEALAILAGEKVWAIYCEVHVIDHDGNLTDAVQIASIAALMHFRRPD 172
Query: 121 V 121
+
Sbjct: 173 L 173
>gi|321458150|gb|EFX69223.1| hypothetical protein DAPPUDRAFT_301019 [Daphnia pulex]
Length = 276
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 20/161 (12%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKG----KVAIFVDCSPTAEPTFEGRGGEELSAELSSAL 57
G+T VI +KAEL P +P KG V + CS + G + + ++ +
Sbjct: 54 GNTTVICGIKAELAAPEREEPSKGFIIPNVTLPSLCSSQIKSGPPGETAQAATQFIAELV 113
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
+ ++ +DL +L + K W L+ D L I+ DG+LLDA A+ AAL N
Sbjct: 114 NNNII---------MDLETLCIKVSKWAWVLHCDLLCINLDGSLLDACVMALVAALKNLK 164
Query: 118 IPSVHVAAEAASDEQPEVDISD-EEFLQFDTSGVPVITTLT 157
+P V + DE+ + IS+ +E + FDT PV +T +
Sbjct: 165 LPIV------SYDEEMDKLISNPDEKMGFDTIKQPVTSTFS 199
>gi|392590636|gb|EIW79965.1| hypothetical protein CONPUDRAFT_166613 [Coniophora puteana
RWD-64-598 SS2]
Length = 289
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
MG T ++ VKAE+ P +P +G + +D CSP +P + LS L+ A
Sbjct: 72 MGDTRIVCGVKAEIAEPELDKPHEGFLVPNLDLPALCSPKFKPGPPAEEAQILSERLNEA 131
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L A + L SL + GK W +YID + ++ DGN DA A+ AAL NT
Sbjct: 132 LV---------ASGILPLESLAIHPGKAVWTIYIDAICLNFDGNAFDAALLAMVAALYNT 182
Query: 117 GIP 119
+P
Sbjct: 183 RLP 185
>gi|428164753|gb|EKX33768.1| hypothetical protein GUITHDRAFT_155941 [Guillardia theta CCMP2712]
Length = 267
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 11/160 (6%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G T IASV+AEL A + V + V CS P+ GR E++SA L++
Sbjct: 31 GGTKAIASVQAELSDTGA-EGSGASVEVSVTCSNM--PSSAGRQAEDMSAALTADANRIF 87
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
A L ++V + W L++D +++ DG LLD + A+ AALS+T +P++
Sbjct: 88 ------ARPIPTLIKSLMVSDRHAWKLFVDVMLVEYDGCLLDVVSIAVWAALSDTKLPTL 141
Query: 122 HVAAEAASDEQPEVDISDEEFLQ--FDTSGVPVITTLTKV 159
A E+ + EE + D S VP ++T+V
Sbjct: 142 STFTNADGSVGVELSLEMEEKNKKPLDLSSVPTYVSITQV 181
>gi|425766655|gb|EKV05258.1| Exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Penicillium digitatum Pd1]
gi|425775306|gb|EKV13584.1| Exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Penicillium digitatum PHI26]
Length = 324
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 20/169 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T++I + AE+ +P +P G I ++ S P +E ++ A ++AL
Sbjct: 78 LGKTNLIVRISAEVTKPREDRPFDGLFNINLELSAMGSPAWENGRTNDIEAYATNALDRI 137
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +D SL +++G CW + D +I DGN+ DA AI A L +
Sbjct: 138 IRHSNA-----LDTESLCILKGVSCWSIRADIHIIDYDGNITDAACIAIMAGLQHF---- 188
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDT-SGVPVITTLTKVPFPLIVHNL 168
+P+ + D + + VPV +T P + H
Sbjct: 189 ----------RRPDAVVRDGRVIVYGVEQRVPVALNITHKPLSVTFHTF 227
>gi|385301287|gb|EIF45489.1| rrp45p [Dekkera bruxellensis AWRI1499]
Length = 261
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 19/165 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE---GRGGEELSAELSSAL 57
+G T+V + A + +P +P +G I + SP P FE G G S + S +
Sbjct: 18 LGKTEVACKISASIEQPYKDRPFEGLFQINTEISPMCSPFFEVSQGAAGGTSSRQTSEEI 77
Query: 58 QHCLLGGKS-GAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ KS +DL +L +V G CW + D ++ DGN +DA A+ AL
Sbjct: 78 LISRMIEKSVRRSNALDLENLCLVAGSKCWSVRADLHFLNYDGNFIDASCIAVMTAL--- 134
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGV-PVITTLTKVP 160
+H ++P+V++S ++ + FDT PV ++ +P
Sbjct: 135 ----LHF-------KKPDVEVSGDDIVVFDTKQRDPVPLSILHIP 168
>gi|297739657|emb|CBI29839.3| unnamed protein product [Vitis vinifera]
Length = 311
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEE---LSAEL 53
+G T ++A+VK E+ P PD+G +AI CSP P GR EE +S +L
Sbjct: 67 IGCTTMLAAVKMEVMTPPKESPDEGSIAIEFYMPPICSPLVRP---GRPAEEAPVVSKQL 123
Query: 54 SSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
S + + S +G I+L L +V GK W Y+D + +DG+L DA A AA
Sbjct: 124 SDTILRHVNVVTSFSGM-INLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAF 182
Query: 114 SNTGIPSVHVAAE 126
S+ IP V + E
Sbjct: 183 SHLRIPVVSLNEE 195
>gi|15218985|ref|NP_176216.1| 3' exoribonuclease domain 1-containing protein [Arabidopsis
thaliana]
gi|4249388|gb|AAD14485.1| Similar to gb|AF025438 Opa-interacting protein (OIP2) from Homo
sapiens [Arabidopsis thaliana]
gi|28416659|gb|AAO42860.1| At1g60080 [Arabidopsis thaliana]
gi|110735926|dbj|BAE99938.1| hypothetical protein [Arabidopsis thaliana]
gi|332195536|gb|AEE33657.1| 3' exoribonuclease domain 1-containing protein [Arabidopsis
thaliana]
Length = 302
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST ++A+++ E+ PS PD+G +AI P PT E + +S L
Sbjct: 67 IGSTTMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVISKRLSDT 126
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L + IDL L +V GK W Y+D + +DG L DA A AA SN IP
Sbjct: 127 IL-----SSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQIPI 181
Query: 121 V------HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPL--IVHN 167
V + A +Q I+++E + + + TL +PF L I+H
Sbjct: 182 VALNDNGRIVAVTGEKDQDNALITEKEAVNKEKRKL----TLKNIPFSLTCILHK 232
>gi|392588434|gb|EIW77766.1| ribosomal protein S5 domain 2-like protein [Coniophora puteana
RWD-64-598 SS2]
Length = 342
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 2 GSTDVIASVKAELGRPSAMQPD-------KGKVAIFVDCSPTAEPTFEGRGGEELSAELS 54
G T+V+A++K E+ S D +G++ V CSP A P ++L +L+
Sbjct: 61 GGTEVVAAIKLEVEDASDRDEDGVDEAEVEGRIIGAVSCSPAAYPHLSSNAVDDLQHDLT 120
Query: 55 SALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALS 114
+ L L A + +L +V GK W +++D +V S GN+ DA+ A +AAL
Sbjct: 121 AVLHSVL------AHPTLRPKNLTIVPGKKAWAVHLDVVVYSDAGNVCDAIFMAARAALW 174
Query: 115 NTGIPSVH 122
+T +P
Sbjct: 175 DTKVPKTR 182
>gi|195351560|ref|XP_002042302.1| GM13365 [Drosophila sechellia]
gi|194124145|gb|EDW46188.1| GM13365 [Drosophila sechellia]
Length = 405
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 63/129 (48%), Gaps = 21/129 (16%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAI--------FVDCSPTAEPTFEGRGGEELSAE 52
MG T V+A V E+G P+ +P++GK+ + F+D A T + R S +
Sbjct: 56 MGDTKVMAQVTCEMGPPALSRPNEGKLHLNVLLGGVAFLD---EAYSTHDQR-----SLK 107
Query: 53 LSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAA 112
L+S L+ KS IDL SL V K W + ++ VI+ DGNL DA A AA
Sbjct: 108 LNSLLERTFRSSKS-----IDLESLCVAAEKHVWCIRVNVNVINHDGNLYDASSIATLAA 162
Query: 113 LSNTGIPSV 121
L + P V
Sbjct: 163 LMHFRRPDV 171
>gi|295664845|ref|XP_002792974.1| exosome complex exonuclease RRP45 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278495|gb|EEH34061.1| exosome complex exonuclease RRP45 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 295
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 18/161 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AE+ +P + + G + V+ + P F+ E+ +L+ L
Sbjct: 51 LGKTSVVVRISAEVTKPHPERENDGIFTVVVELNDMTSPAFKTGWQSEMETQLARILDRI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + GK CW + D VI SDG L+D+ AI AL + +
Sbjct: 111 I--RRSNA---LDTESLCIAAGKNCWHIRADVHVIDSDGGLVDSCCLAIMTALLHFRL-- 163
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPF 161
+EA E + S EE VP LTK+P
Sbjct: 164 ----SEAIVREGRVIVFSPEE-------RVPSPLNLTKLPL 193
>gi|390594716|gb|EIN04125.1| ribosomal protein S5 domain 2-like protein [Punctularia
strigosozonata HHB-11173 SS5]
Length = 343
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 2 GSTDVIASVKAEL---GRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQ 58
G T+V+A+VK E+ G+ + D G++ V C P+A P +ELSA+LS+ L
Sbjct: 59 GGTEVLAAVKLEVEDVGKDDGV--DGGRLNCSVTCLPSAYPHLAPTALDELSADLSALLH 116
Query: 59 HCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGI 118
L A + S+L ++ K W ++D ++ S GN LDAL A +AAL +T +
Sbjct: 117 TTL------AHPSLLPSNLTIIPNKKSWVAHLDCVLRSDGGNALDALFVAARAALWDTKV 170
Query: 119 PSVH 122
P
Sbjct: 171 PRTR 174
>gi|294877908|ref|XP_002768187.1| Exosome complex exonuclease RRP43, putative [Perkinsus marinus ATCC
50983]
gi|239870384|gb|EER00905.1| Exosome complex exonuclease RRP43, putative [Perkinsus marinus ATCC
50983]
Length = 291
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 7/125 (5%)
Query: 14 LGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGID 73
LG P + P +G++ + VD P A+ + R +++S+ +++ + L G D
Sbjct: 64 LGEPLSSMPRQGRLTVSVDLPPAADQSR--RQAQQVSSWVATKVGSILQMGPEV----FD 117
Query: 74 LSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQP 133
S L VVEG+V W L++ V+S DG+L+D A AL + +P++ A EA SD
Sbjct: 118 PSQLCVVEGQVVWQLHLVITVLSVDGSLMDVCMRAAVEALQSVQLPALF-AGEALSDRAA 176
Query: 134 EVDIS 138
+V+I+
Sbjct: 177 DVNIA 181
>gi|325180002|emb|CCA14404.1| exosome complex exonuclease RRP43 putative [Albugo laibachii Nc14]
Length = 293
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 11/142 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+ +T VI ++ +G P+ + +G + I + +P F GR EE +A +SS +
Sbjct: 67 LKNTSVITGIQLAVGTPAIDKQTEGDIVIQIHLTPLCSTRFNVGRACEEANA-VSSHISK 125
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + IDL+ L + +GK W++ ID I DGN+ + +I AL +P
Sbjct: 126 IIRRAR-----MIDLTQLSIEKGKSAWNVMIDVYCIDYDGNIFEVSLMSIMTALQKLRLP 180
Query: 120 SVHVAAEAASDEQPEVDISDEE 141
+ V + D + E+D SDEE
Sbjct: 181 ATRV---SEVDHKVEID-SDEE 198
>gi|353237792|emb|CCA69757.1| probable RRP45-Exosome complex exonuclease [Piriformospora indica
DSM 11827]
Length = 313
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 29/168 (17%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V+ASV+A++ +P+ +P +G + I + SP A +E GR +E ++ L
Sbjct: 51 MGKTRVLASVEAKMVKPTPDRPYEGTINIHSEFSPMASSEYEQGRTSDE-EVTITRMLDK 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +S A +D SL VV G+ W L + +S GN+LD A AL +
Sbjct: 110 VL--RRSDA---LDKESLCVVAGQRVWSLKLTVQFLSDAGNMLDCACLAGIVALRHF--- 161
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHN 167
+PEV+I EE + V + ++ P PL +H+
Sbjct: 162 -----------RKPEVEIDGEEVI--------VHSPDSRAPLPLAIHH 190
>gi|407917787|gb|EKG11090.1| Exoribonuclease phosphorolytic domain 1 [Macrophomina phaseolina
MS6]
Length = 292
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + +++ P A + G I + SP A P FE E LS L+
Sbjct: 51 LGKTRVLVRISSDVTAPFADRKFDGIFNISTEFSPMASPAFEVGRQTEAEVILSRILEKA 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G C+ + D ++ DGNL+DA AI AAL + P
Sbjct: 111 I--RRSGA---LDTESLCIVAGSKCFSVRADVNILDHDGNLIDASCIAIIAALQHFRRPD 165
Query: 121 VHVAAEAASDEQPE 134
+ V E + P
Sbjct: 166 IAVEGEKVTVFSPR 179
>gi|116207378|ref|XP_001229498.1| hypothetical protein CHGG_02982 [Chaetomium globosum CBS 148.51]
gi|88183579|gb|EAQ91047.1| hypothetical protein CHGG_02982 [Chaetomium globosum CBS 148.51]
Length = 268
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A AE+ P +P G I + SP P FE E LS L+
Sbjct: 51 LGKTRVLAKATAEVTVPYVDRPLDGIFTIATELSPMTSPAFEVNRPTETEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ CW + +D V+S DG L DA A+ AAL + P
Sbjct: 111 V--RRSGA---LDTESLCLVAGQKCWSVRVDVHVVSHDGGLTDAACVAVVAALRHFRKPD 165
Query: 121 VHVAA 125
+ A
Sbjct: 166 TSMEA 170
>gi|195567204|ref|XP_002107160.1| GD15722 [Drosophila simulans]
gi|194204561|gb|EDX18137.1| GD15722 [Drosophila simulans]
Length = 407
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 73/167 (43%), Gaps = 27/167 (16%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+A V E+G PS +P++GK+ + V A ++ S +L+S L+
Sbjct: 56 MGDTKVMAQVICEMGLPSLSRPNEGKLQLNVLLGGVAFLDEAYSTHDQRSLKLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K IDL SL V K W + ++ VI+ DGNL DA A AAL
Sbjct: 116 FRSSKC-----IDLESLCVAAEKHVWCIRVNVNVINHDGNLYDASSIATLAAL------- 163
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHN 167
+H +P+V D E F +G+ PL+ H+
Sbjct: 164 MHF-------RRPDVSYKDGELRIFKQNGLEFT--------PLLFHH 195
>gi|156083393|ref|XP_001609180.1| 3' exoribonuclease family, domain 1 containing protein [Babesia
bovis T2Bo]
gi|154796431|gb|EDO05612.1| 3' exoribonuclease family, domain 1 containing protein [Babesia
bovis]
Length = 196
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V +V +E+ P+ P +G V V+ SP +E ++ E+S A++
Sbjct: 61 LGDTIVFVAVSSEIVPPNVEHPTEGIVTFSVELSPMCSLNYEPGKASDVEQEISYAIEK- 119
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ SG ID+ SL +V K W L ++ ++ +DGNLLDA A+ AL + P
Sbjct: 120 -IYKDSGI---IDVESLCIVSRKHVWCLRVNIHILQNDGNLLDATNIAVFKALMSYRKP 174
>gi|322790229|gb|EFZ15228.1| hypothetical protein SINV_06363 [Solenopsis invicta]
Length = 139
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T + +KAEL P A PD G + V+ SP F G A++ S L
Sbjct: 30 LGDTTAVCGIKAELATPKADTPDHGYIVPNVELSPLCSSKFRP-GPPSEQAQVLSKLIDI 88
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
+L +DL L + K+ W LY D L ++ +G+++DA A+ AAL
Sbjct: 89 ILSN----SVALDLKDLCICRNKLVWVLYCDILCLNYNGSVIDACTGAMFAAL 137
>gi|328861810|gb|EGG10912.1| hypothetical protein MELLADRAFT_33545 [Melampsora larici-populina
98AG31]
Length = 286
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 29/169 (17%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V A V A + RP +P +G + + + +P A +E GR E+ LS L
Sbjct: 51 LGRTRVSAHVSATITRPRPDRPFEGLLQVSAEINPLASFVYEIGRASED-EVHLSRLLDK 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L+ +SG ID +L ++ G+ W + +D ++ +GN+LD A AAL N P
Sbjct: 110 TLV--RSGV---IDREALCILAGQKVWCIRVDLHFLNDEGNMLDCASVAAIAALQNFRRP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
+ + E E+ + FD ++P PL +H+L
Sbjct: 165 DITLVGE-------EITVHS-----FD----------ERLPIPLTLHHL 191
>gi|19075183|ref|NP_587683.1| exosome subunit Rrp45 (predicted) [Schizosaccharomyces pombe 972h-]
gi|21759396|sp|O74918.1|RRP45_SCHPO RecName: Full=Exosome complex component rrp45; AltName:
Full=Ribosomal RNA-processing protein 45
gi|3702641|emb|CAA21233.1| exosome subunit Rrp45 (predicted) [Schizosaccharomyces pombe]
Length = 291
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 13/133 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEE---LSAELSSA 56
G T V+A + E+ +P +P G +I + +P A FE GR ++ +S + A
Sbjct: 51 FGHTRVMARITTEITKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKA 110
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ +S A +D SL ++ G+ CW + I+ DGNL+DA A+ AAL +
Sbjct: 111 VR------RSNA---LDTESLCIISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHF 161
Query: 117 GIPSVHVAAEAAS 129
P + V E +
Sbjct: 162 RRPELTVVGEEVT 174
>gi|212532847|ref|XP_002146580.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
gi|210071944|gb|EEA26033.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
Length = 294
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ + AE+ +P + G I ++ + P +E E +S L
Sbjct: 51 LGQTSLVVRISAEVSKPRDDRQSDGTFLIAMELTAMGSPAWENLRQSEFETYVSRVLDRV 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +D SL +++GK CW++ D V + DGNL+D+ I A L + P
Sbjct: 111 IRHSNA-----LDTESLCILKGKSCWNIRADVHVTNFDGNLIDSACIGIMAGLQHFRRPD 165
Query: 121 VHV 123
+ V
Sbjct: 166 IEV 168
>gi|356568754|ref|XP_003552575.1| PREDICTED: exosome complex component RRP43-like [Glycine max]
Length = 301
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 23/176 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST ++ ++K E+ PS PD+G +AI CSP P +S +LS+
Sbjct: 67 IGSTTMLTAIKMEIMTPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPMVSKQLSNT 126
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + DL L +V GK W Y+D + +DG L DA + AALS+
Sbjct: 127 I---------SSSRMTDLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAIAALSHL 177
Query: 117 GIPSVHVAAEAASDEQPEVDISDEE---FLQFDTSGVPVITTLTKVPFPL--IVHN 167
IPS+ A +D+ V +SDE+ Q + TL +PF L I+H
Sbjct: 178 QIPSI-----AMNDDGKIVLVSDEDGQKRAQEPVNKEKRKLTLRSIPFSLTCILHK 228
>gi|24642649|ref|NP_573163.1| Rrp45 [Drosophila melanogaster]
gi|19527801|gb|AAL90015.1| AT07738p [Drosophila melanogaster]
gi|22832411|gb|AAF48665.2| Rrp45 [Drosophila melanogaster]
gi|220949552|gb|ACL87319.1| Rrp45-PA [synthetic construct]
gi|220958432|gb|ACL91759.1| Rrp45-PA [synthetic construct]
Length = 412
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+A V E+G P+ +P++GK+ + V A ++ S +L+S L+
Sbjct: 56 MGDTKVLAQVTCEMGPPALSRPNEGKIHLNVYLGGVAFLDEAHTTHDQRSLKLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+S IDL SL V K W + ++ V++ DGNL DA A AAL + P
Sbjct: 116 FRSSRS-----IDLESLCVAVEKHVWCIRVNVNVLNHDGNLYDASTIATLAALMHFRRPD 170
Query: 121 V 121
V
Sbjct: 171 V 171
>gi|12847890|dbj|BAB27749.1| unnamed protein product [Mus musculus]
Length = 395
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V E + PE
Sbjct: 165 VSVQGEEVTLYTPE 178
>gi|72041533|ref|XP_796992.1| PREDICTED: exosome complex component RRP43-like [Strongylocentrotus
purpuratus]
Length = 275
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +K E P+ +P KG + VD P F+ G + A+++S L
Sbjct: 53 LGNTTVVCGIKGEFASPTVEEPKKGYLVPNVDLPPLCSAQFKP-GPPSIQAQVTSQL--- 108
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + ++ L + EG + W LY D + + DGN++DA A+ AAL N +P
Sbjct: 109 -VADTLLSSNLLNYEDLCIKEGSMVWVLYCDMICLDYDGNIIDACLIALLAALRNVRLPV 167
Query: 121 VHVA-----AEAASDEQPEVDISDE----EFLQFDTS 148
V +A AE +S E ++I ++ F FD S
Sbjct: 168 VTIAEDTGLAELSSTEDRSLNIVNQFAATTFSVFDDS 204
>gi|344245223|gb|EGW01327.1| Exosome complex exonuclease RRP45 [Cricetulus griseus]
Length = 386
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V E + PE
Sbjct: 165 VSVQGEEVTLYTPE 178
>gi|330508838|ref|YP_004385266.1| exosome complex exonuclease 2 [Methanosaeta concilii GP6]
gi|328929646|gb|AEB69448.1| exosome complex exonuclease 2 [Methanosaeta concilii GP6]
Length = 258
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GS+ V+ VK + G P P++G + + P A P+FE E+ EL+ +
Sbjct: 52 LGSSQVLVGVKMQPGEPFQDSPNRGVIITNAELVPLASPSFEPGPPNEVGIELARLVDRG 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K+ +DL +L + GK W ++ID ++ GN+LDA +AL T +P+
Sbjct: 112 VRESKA-----VDLEALCIEPGKKVWIVFIDVHILDDCGNILDAASLGAISALLCTKVPA 166
>gi|255935559|ref|XP_002558806.1| Pc13g03690 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583426|emb|CAP91438.1| Pc13g03690 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 297
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 20/169 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T++I + AE+ +P +P G I ++ + P +E ++ A ++ L
Sbjct: 51 LGKTNIIVRISAEVTKPREDRPFDGLFNINLELTAMGSPAWESGRTNDIEAYATNTLDRI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +D SL +++G CW + D VI DGN+ DA AI A L +
Sbjct: 111 IRHSNA-----LDTESLCILKGVSCWSIRADVHVIDYDGNITDAACIAIMAGLQHF---- 161
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDT-SGVPVITTLTKVPFPLIVHNL 168
+P+ + D + + VPV +T P + H
Sbjct: 162 ----------RRPDAVVRDGRVIVYGVEQRVPVALNITHKPLSVTFHTF 200
>gi|118371223|ref|XP_001018811.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila]
gi|89300578|gb|EAR98566.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila SB210]
Length = 776
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 20/164 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTA-EPTFEGRGGEELSAELSSALQH 59
+G T +I AE+ +P +P++G + VD S E ++ S E+ L+
Sbjct: 493 IGDTHIITKTTAEIIQPKQEKPNEGSLKFNVDLSSMQDEQQPNNVNIKKYSNEIQKLLEK 552
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ G K+ ID+ SL +V K W + +D V+S+ GNL+DA+ ++ +L
Sbjct: 553 IIKGSKA-----IDMESLCIVTNKRVWSINVDSSVVSNGGNLIDAIYLSVIISL------ 601
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPL 163
+H +P V + + ++ T P ++ +P P
Sbjct: 602 -LHF-------RKPYVSVEQQSNIKIHTEKNPQPLSIHHIPIPF 637
>gi|332374620|gb|AEE62451.1| unknown [Dendroctonus ponderosae]
Length = 174
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T VI VKAEL RP P+KG + ++ SP F+ G GEE + L
Sbjct: 53 VGKTTVICGVKAELCRPRPECPNKGFLVPNLELSPLCSSKFKSGPPGEE-----AQVLTQ 107
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALS 114
L+ I+L L +++ K+ W LY D + + DG+LLDA A+ A L
Sbjct: 108 -LIADVIENSRCINLEELCLLKDKLAWCLYADLVCLDYDGSLLDACIVALMACLR 161
>gi|187957240|gb|AAI58076.1| Exosc9 protein [Mus musculus]
Length = 438
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V E + PE
Sbjct: 165 VSVQGEEVTLYTPE 178
>gi|148703131|gb|EDL35078.1| exosome component 9, isoform CRA_a [Mus musculus]
gi|148703133|gb|EDL35080.1| exosome component 9, isoform CRA_a [Mus musculus]
Length = 437
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V E + PE
Sbjct: 165 VSVQGEEVTLYTPE 178
>gi|9506981|ref|NP_062266.1| exosome complex component RRP45 [Mus musculus]
gi|14285679|sp|Q9JHI7.1|EXOS9_MOUSE RecName: Full=Exosome complex component RRP45; AltName:
Full=Autoantigen PM/Scl 1; AltName: Full=Exosome
component 9; AltName: Full=P75 polymyositis-scleroderma
overlap syndrome-associated autoantigen; AltName:
Full=Polymyositis/scleroderma autoantigen 1; AltName:
Full=Polymyositis/scleroderma autoantigen 75 kDa;
Short=PM/Scl-75
gi|8132103|gb|AAF73218.1|AF152841_1 polymyositis scleroderma overlap syndrome (PM-SCL) antigen 1 a [Mus
musculus]
gi|8132105|gb|AAF73219.1|AF152842_1 polymyositis scleroderma overlap syndrome (PM-SCL) antigen 1 b [Mus
musculus]
gi|13542847|gb|AAH05622.1| Exosome component 9 [Mus musculus]
gi|30354433|gb|AAH52156.1| Exosome component 9 [Mus musculus]
Length = 438
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V E + PE
Sbjct: 165 VSVQGEEVTLYTPE 178
>gi|324513828|gb|ADY45664.1| Exosome complex exonuclease RRP45 [Ascaris suum]
Length = 419
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHC 60
GST V A V + P + + + G V + VD SP PT E GR G + EL+ L+
Sbjct: 51 GSTKVSAQVTCNIVEPKSARGNMGAVEVHVDMSPMGSPTHEDGRLGPK-GIELTRVLE-- 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LL GA +DL +L + K W + +D ++ +DG L+D A AL++ P
Sbjct: 108 LLCRDCGA---VDLEALCLTAYKKVWQIRVDVHILQADGALIDCASVAAITALAHFRRPD 164
Query: 121 VHV 123
V V
Sbjct: 165 VTV 167
>gi|452985011|gb|EME84768.1| hypothetical protein MYCFIDRAFT_163550 [Pseudocercospora fijiensis
CIRAD86]
Length = 304
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A + A + +P + G I + SP A P FE ++ LS L+
Sbjct: 51 IGKTRVLAKISATVVQPYEDRKFDGVFTISTELSPIASPAFEVGRQDQTEVLLSRILEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ CW + D ++ DGNL+DA AA+ AA+ + P
Sbjct: 111 I--RRSGA---LDTESLCIVAGQKCWHVRADIHILDHDGNLVDAACAALVAAIMHFRRPD 165
Query: 121 VHVAAE 126
V V E
Sbjct: 166 VEVHGE 171
>gi|224138050|ref|XP_002322717.1| predicted protein [Populus trichocarpa]
gi|222867347|gb|EEF04478.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 21/139 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST ++A++K E+ PS PD+G +AI CSP P +S +LS
Sbjct: 67 IGSTTMLAAIKMEVMTPSTESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDT 126
Query: 57 L-------------QHCLLGGK-SGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLL 102
+ Q +L + SG I+L L +V GK W Y+D + +DG L
Sbjct: 127 ISRQVKFSASIDSPQRLILHAEISGM---INLKELSLVSGKAAWMAYLDIYCLDADGALF 183
Query: 103 DALGAAIKAALSNTGIPSV 121
DA + AA S+ IP V
Sbjct: 184 DAALLSAVAAFSHLQIPIV 202
>gi|255075435|ref|XP_002501392.1| predicted protein [Micromonas sp. RCC299]
gi|226516656|gb|ACO62650.1| predicted protein [Micromonas sp. RCC299]
Length = 291
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 7/102 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A V A+L PS + ++G + I V+ SP A P FE GR GE+ + EL+ L+
Sbjct: 53 LGDTRVLAVVSAKLEPPSGARGNEGTITINVEFSPMASPNFEPGRPGEQ-AQELALVLER 111
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNL 101
+ ++GA +D+ SL V+ G+ W + D V+ + GN+
Sbjct: 112 AI--RETGA---VDVESLCVLAGRRVWHVRCDVHVLDACGNI 148
>gi|354496605|ref|XP_003510416.1| PREDICTED: exosome complex component RRP45-like [Cricetulus
griseus]
Length = 437
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V E + PE
Sbjct: 165 VSVQGEEVTLYTPE 178
>gi|409041826|gb|EKM51311.1| hypothetical protein PHACADRAFT_129196 [Phanerochaete carnosa
HHB-10118-sp]
Length = 347
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 7/151 (4%)
Query: 2 GSTDVIASVKAELGR-PSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G T+VIA+VK E+ + D G++ V CSP A P +EL + ++ L
Sbjct: 65 GGTEVIAAVKLEVENVENGDGVDGGRIVCTVLCSPAAYPQLSSNALDELQYDYTAVLHQT 124
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + + S+L ++ K W L +D ++S GN D + A +AAL +T +P
Sbjct: 125 L------SHPTLRPSNLGILPRKKSWLLNLDITIVSDAGNTYDVMFMAARAALWDTKVPR 178
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVP 151
AA + + E + D GVP
Sbjct: 179 TRSVQYAARKGSAPMIQAGEASMDVDEDGVP 209
>gi|324510352|gb|ADY44328.1| Exosome complex exonuclease RRP45 [Ascaris suum]
Length = 431
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHC 60
GST V A V + P + + + G V + VD SP PT E GR G + EL+ L+
Sbjct: 51 GSTKVSAQVTCNIVEPKSARGNMGAVEVHVDMSPMGSPTHEDGRLGPK-GIELTRVLE-- 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LL GA +DL +L + K W + +D ++ +DG L+D A AL++ P
Sbjct: 108 LLCRDCGA---VDLEALCLTAYKKVWQIRVDVHILQADGALIDCASVAAITALAHFRRPD 164
Query: 121 VHV 123
V V
Sbjct: 165 VTV 167
>gi|70794772|ref|NP_001020577.1| exosome complex component RRP45 [Rattus norvegicus]
gi|81918190|sp|Q4QR75.1|EXOS9_RAT RecName: Full=Exosome complex component RRP45; AltName:
Full=Exosome component 9
gi|67678411|gb|AAH97413.1| Exosome component 9 [Rattus norvegicus]
gi|149048739|gb|EDM01280.1| exosome component 9, isoform CRA_b [Rattus norvegicus]
gi|149048740|gb|EDM01281.1| exosome component 9, isoform CRA_b [Rattus norvegicus]
Length = 437
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V E + PE
Sbjct: 165 VSVQGEEVTLYTPE 178
>gi|380479303|emb|CCF43100.1| 3' exoribonuclease [Colletotrichum higginsianum]
Length = 298
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ V AE+ P A +P +G I + SP A P FE E LS L+
Sbjct: 51 LGKTRILVKVSAEVTVPYADRPFEGIFQITSELSPMASPAFEINRPTEAEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
+ +SGA +D SL +V G+ W + D V+S DGNL D
Sbjct: 111 I--RRSGA---LDTESLCLVAGQKVWSVRADVHVLSHDGNLTD 148
>gi|302791854|ref|XP_002977693.1| hypothetical protein SELMODRAFT_176463 [Selaginella moellendorffii]
gi|300154396|gb|EFJ21031.1| hypothetical protein SELMODRAFT_176463 [Selaginella moellendorffii]
Length = 291
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 16/169 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAI-FVD---CSPTAEPTFEGRGGEELSAELSSA 56
+G+T ++A K E P+A PD+G +++ FV CSP P GR EE + ++
Sbjct: 58 IGNTTMLAGAKLETMEPAADTPDQGCLSVDFVMPPICSPRVRP---GRPAEE-AYVITEQ 113
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
LQ+ LL SG +DL L +V GK W +Y+D + +DG+LLDA A AAL++
Sbjct: 114 LQNALLS--SGV---VDLRELSIVSGKAAWMIYLDVYCLDADGSLLDAALLASVAALAHL 168
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
+P++ V +E + P + + ++F P L + PF L V
Sbjct: 169 QVPAICVRSEGKITKAPPDAQASSDGIEFTQ---PRRLNLGEFPFALTV 214
>gi|302795634|ref|XP_002979580.1| hypothetical protein SELMODRAFT_233365 [Selaginella moellendorffii]
gi|300152828|gb|EFJ19469.1| hypothetical protein SELMODRAFT_233365 [Selaginella moellendorffii]
Length = 291
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAI-FVD---CSPTAEPTFEGRGGEELSAELSSA 56
+G+T ++A K E P+A PD+G +++ FV CSP P GR EE ++
Sbjct: 58 IGNTTMLAGAKLETMEPAADTPDQGCLSVDFVMPPICSPRVRP---GRPAEEAYV-ITEQ 113
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
LQ+ LL SG +DL L +V GK W +Y+D + +DG+LLDA A AAL++
Sbjct: 114 LQNALLS--SGV---VDLRELSIVSGKAAWMIYLDVYCLDADGSLLDAALLASVAALAHL 168
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
+P++ V +E + P + + ++F P L + PF L V
Sbjct: 169 QVPAICVRSEGKITKAPPDAQASSDGIEFTQ---PRRLNLGEFPFALTV 214
>gi|225441838|ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-like [Vitis vinifera]
Length = 303
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G T ++A+VK E+ P PD+G +AI CSP P GR EE + +S
Sbjct: 67 IGCTTMLAAVKMEVMTPPKESPDEGSIAIEFYMPPICSPLVRP---GRPAEE-APVVSKQ 122
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L +L + I+L L +V GK W Y+D + +DG+L DA A AA S+
Sbjct: 123 LSDTIL-----SSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSHL 177
Query: 117 GIPSVHVAAE 126
IP V + E
Sbjct: 178 RIPVVSLNEE 187
>gi|224090167|ref|XP_002308947.1| predicted protein [Populus trichocarpa]
gi|222854923|gb|EEE92470.1| predicted protein [Populus trichocarpa]
Length = 318
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST ++A++K E+ PS P++G +AI CSP P +S +LS
Sbjct: 67 IGSTTMLAAIKMEVMTPSTESPEEGSIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDT 126
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDA 104
+ + G I+L L +V GK W Y+D + +DG L DA
Sbjct: 127 ISRQVNSGM------INLKELSLVSGKAAWMAYLDIYCLDADGALFDA 168
>gi|392559604|gb|EIW52788.1| ribosomal protein S5 domain 2-like protein [Trametes versicolor
FP-101664 SS1]
Length = 342
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 2 GSTDVIASVKAELGRPSAMQP----DKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSAL 57
G T+V+A+ K E+ M+ D G+V V CSP+A +EL +L+ L
Sbjct: 64 GGTEVLAATKLEV---EDMETGDGVDGGRVVCSVSCSPSAYSHLSSNALDELQHDLTVIL 120
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
Q + + + +L ++ K W L +D ++++ GN +DAL A +AAL +T
Sbjct: 121 QQTI------SHPSLHPQNLTIIPRKKSWLLNLDAVILADAGNAVDALFMAARAALWDTK 174
Query: 118 IPSVHV-------AAEAASDEQPEVDISDEEFLQ----FDTS 148
+P A++ A D +D+ + E + FDT
Sbjct: 175 VPRTRAVEYNAPEASQVARDSAGAMDVDNREAIPAVSGFDTR 216
>gi|443926207|gb|ELU44925.1| 3' exoribonuclease family domain-containing protein [Rhizoctonia
solani AG-1 IA]
Length = 325
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 11/127 (8%)
Query: 1 MGSTDVIASVKAELGRPSAM-----QPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSS 55
+G T+V +K E+ A D G+V V C+P + P G+ +++S E S+
Sbjct: 57 VGGTEVWTGIKLEVETNEAKLAGASGQDGGRVEFVVACTPGSHPHLSGQAIDDISLEYSN 116
Query: 56 ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
L A I +V G W +++D LVIS GNL+D L AI+ AL +
Sbjct: 117 QCAAAL------ASFLIPNPQFTIVPGYKSWLIHVDSLVISDAGNLVDVLWMAIRGALWD 170
Query: 116 TGIPSVH 122
IP +
Sbjct: 171 LRIPRTN 177
>gi|430813254|emb|CCJ29382.1| unnamed protein product [Pneumocystis jirovecii]
Length = 280
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T ++AE+ +PS +P +G + + SP ++ ++ + LQ
Sbjct: 62 MGDTIFTCGIQAEITKPSIERPLEGWIVPHITFSPICSQKYKSNHHNHIAQAM---LQRI 118
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L + LSSL++ E K W LY+D + ++ DGN +D A+ +AL T +P
Sbjct: 119 L--SLMHTSNILPLSSLLISEYKAAWVLYVDLICLNYDGNAMDVAWIALISALETTKLP 175
>gi|355686813|gb|AER98195.1| exosome component 9 [Mustela putorius furo]
Length = 394
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|320582164|gb|EFW96382.1| Exosome non-catalytic core component [Ogataea parapolymorpha DL-1]
Length = 311
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEG---RGGEELSAELSSAL 57
+G T V V AE+ +P +P G I D SP P FE G ++ + E+ L
Sbjct: 52 LGKTKVACRVTAEITKPYEDRPFDGIFQISTDISPICSPFFESGLTTGSKQSNDEI---L 108
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
L+ +DL SL ++ G CW + D ++ DGN +D A+ AL +
Sbjct: 109 ISRLIEKAVRRSGALDLESLCIIAGSKCWAVRADLQFLNYDGNFIDISSIAVMVALLHFR 168
Query: 118 IPSVHV 123
P + +
Sbjct: 169 KPDMEI 174
>gi|332244454|ref|XP_003271389.1| PREDICTED: exosome complex component RRP45 isoform 3 [Nomascus
leucogenys]
Length = 392
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A +L + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVSLCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|341877085|gb|EGT33020.1| CBN-EXOS-7 protein [Caenorhabditis brenneri]
Length = 310
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 17/170 (10%)
Query: 3 STDVIASVKAEL-GRPSAMQPD-KGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+TD++ +K EL SA + + K + VD S A F G+GG++ E+S+A Q
Sbjct: 55 TTDILTGIKLELESYDSATEKEAKQPMQFHVDFSANASSQFAGKGGDQYGEEISAAFQ-- 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +LS + EG W + +D V+ G++ DA+ A+ ALS+ IP
Sbjct: 113 -VAYSRSLDIMSNLSKTHLAEGYR-WKINVDVSVLQWAGSIPDAISLAVIGALSDLEIPE 170
Query: 121 VHVAAEAASD-----EQPEV--DISDEE----FLQFDTSGVPVITTLTKV 159
V VA + ++P + ++ DEE + D P++ T++K+
Sbjct: 171 VEVAPDDGGKVSIVLKRPRIGGNVRDEEVPVQMWRLDVQSCPLLLTISKI 220
>gi|194891452|ref|XP_001977495.1| GG18224 [Drosophila erecta]
gi|190649144|gb|EDV46422.1| GG18224 [Drosophila erecta]
Length = 415
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+ V ++G P+ +P++GK + V+ + A ++ S L+S L+
Sbjct: 56 MGDTKVLTRVTCDMGTPATSRPNEGKFQLNVNLAGVAFLDELQTTHDQRSLTLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+S +DL SL V W + +D V++ DGNL DA A AAL + P
Sbjct: 116 FRSSRS-----VDLESLCVAAEHHVWCIRVDVNVLNHDGNLYDASTIATLAALMHFRRPD 170
Query: 121 VHVA 124
V A
Sbjct: 171 VTFA 174
>gi|189206730|ref|XP_001939699.1| 3' exoribonuclease [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187975792|gb|EDU42418.1| 3' exoribonuclease [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 291
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA + ++ P + G I + SP A P FE + LS L+
Sbjct: 51 LGKTRVIARISVDVTTPLPERKFDGIFQIVTEFSPMASPAFEVGRPTDAEVILSRILEKA 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL ++ G C+ L D +I DG L+DA A+ AAL + P
Sbjct: 111 I--RRSNA---LDTESLCIIAGSKCFALRADVHIIDHDGGLIDASCIAVMAALQHFRRPD 165
Query: 121 VHVAAEAAS 129
V V E A+
Sbjct: 166 VVVEGEKAT 174
>gi|167043480|gb|ABZ08177.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
microorganism HF4000_APKG2H5]
Length = 264
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 18/159 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V A VK ++ P +P++G + + P A P +E S EL +
Sbjct: 53 MGDTIVYAGVKLQIMVPYPDRPNQGGLMCSAEVRPVAGPNWEPGPPSPESIELGRVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SG ID+ L ++ G+ W + +D IS DGNL DA A AA+ IP
Sbjct: 113 IR--ESGC---IDVDGLCLIPGEKAWQVILDLFAISDDGNLFDAFALAGIAAMRTAMIPE 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
E + +++P + S P++ + KV
Sbjct: 168 ERF--EISGEDRP-----------LNISKTPIMCSYHKV 193
>gi|242007204|ref|XP_002424432.1| Exosome complex exonuclease RRP43, putative [Pediculus humanus
corporis]
gi|212507832|gb|EEB11694.1| Exosome complex exonuclease RRP43, putative [Pediculus humanus
corporis]
Length = 276
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 10/156 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ VK EL +P A PD+G + VD P ++ + + E + +
Sbjct: 53 IGNTAVVCGVKLELAKPKAETPDQGYLIPNVDLPPLCSGQYQPGPPCDYAQEATKFVNEI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LL + IDL +L +V ++ W +Y+D + ++ DGNLLDA AA AAL T +P
Sbjct: 113 LLESQC-----IDLKALCIVPDRLAWVIYLDIICLNQDGNLLDAALAAGIAALKVTTLPE 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V E+ E ++ + Q + +P+ TT+
Sbjct: 168 VIYNVESG-----EKVVNPLKRQQLNVKKLPLSTTI 198
>gi|298705981|emb|CBJ29102.1| similar to exosome component 6 [Ectocarpus siliculosus]
Length = 274
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 21/163 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+A + ++G PS P G + + V +P + F E + LS+ +++
Sbjct: 56 LGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAHVLSTFVKNS 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
++ +SGA + L+ L + +G W L +D + +S DGNL DA A AL +P
Sbjct: 116 IV--ESGA---LVLTDLAIDDGAFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPG 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPL 163
I DE F+ DT P + +VP PL
Sbjct: 171 TR-------------RIDDEIFVTEDT---PTQLVVREVPVPL 197
>gi|332244452|ref|XP_003271388.1| PREDICTED: exosome complex component RRP45 isoform 2 [Nomascus
leucogenys]
Length = 456
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A +L + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVSLCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|242776727|ref|XP_002478890.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Talaromyces stipitatus ATCC 10500]
gi|218722509|gb|EED21927.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Talaromyces stipitatus ATCC 10500]
Length = 252
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
+ ++ + AE+ RP + G I ++ + P +E EL +S L +
Sbjct: 12 SSLVVRISAEVSRPRDDRQSDGTFLIAMELTAMGSPAWENLRQNELETYVSRVLDRVIRH 71
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
+ +D SL +++GK CW++ D V DGNL+D+ I A L + P + V
Sbjct: 72 SNA-----LDTESLCILKGKSCWNIRADVHVTDYDGNLIDSACIGIMAGLQHFRRPDIEV 126
>gi|449303023|gb|EMC99031.1| hypothetical protein BAUCODRAFT_146018 [Baudoinia compniacensis
UAMH 10762]
Length = 295
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +V E+ P + G I + P A P FE ++ +S L+
Sbjct: 54 IGKTRVLCNVSCEVVTPYPDRKFDGVFTISCELGPMASPAFEVGRPDQTEMLISRILEKT 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ C+ + D V+ DGNLLDA A+ AAL + P
Sbjct: 114 I--RRSGA---LDTESLCIVAGQKCFHVRADIHVLDHDGNLLDAACIALMAALLHFRRPD 168
Query: 121 VHVAAE 126
V E
Sbjct: 169 FEVHGE 174
>gi|332244450|ref|XP_003271387.1| PREDICTED: exosome complex component RRP45 isoform 1 [Nomascus
leucogenys]
Length = 439
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A +L + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVSLCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|308486185|ref|XP_003105290.1| CRE-EXOS-7 protein [Caenorhabditis remanei]
gi|308256798|gb|EFP00751.1| CRE-EXOS-7 protein [Caenorhabditis remanei]
Length = 314
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 17/170 (10%)
Query: 3 STDVIASVKAELG--RPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+TDV+A +K EL P A + K ++ VD S A F G+GG++ ELS+A Q
Sbjct: 55 TTDVLAGIKLELEAYDPIAEKQPKQPMSFHVDFSANASSQFAGKGGDQYGEELSAAFQ-- 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +LS + G W +++D V+ G++ DA AI ALS+ IP
Sbjct: 113 -VAYSRSLDIIPNLSKTQLAAGYR-WKIHVDISVLQWAGSVPDACSLAIIGALSDLEIPE 170
Query: 121 VHVAAEAASD-----EQPEV--DISDEE----FLQFDTSGVPVITTLTKV 159
V V + ++P + D+ DEE + + P++ T++K+
Sbjct: 171 VDVTPDDGGKVSIVLKRPRIGGDVRDEEVPVAMWKLIVTSCPMLLTVSKI 220
>gi|327310388|ref|YP_004337285.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus uzoniensis
768-20]
gi|326946867|gb|AEA11973.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus uzoniensis
768-20]
Length = 273
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 13/166 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK LG+P PD+G + + + P A P E +E + EL+ +
Sbjct: 59 LGKTRVVAGVKVGLGQPFPDAPDEGVLIVNAEILPHASPYSEIGPPDETAIELARVVDR- 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
G +G +D L + + KV + L++D V++ DGNL+DA A AAL +T +PS
Sbjct: 118 ---GIRHSGF-VDFKKLAIDQNKV-YVLWVDLYVLNDDGNLVDAANLAALAALRSTMLPS 172
Query: 121 VHVAAEAASDEQ-PEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
A DE ++D +++ L D S P+ ++ K+ LIV
Sbjct: 173 ------AVKDETGVKLDRNNKTALPSDLSKAPIAVSIGKIDNRLIV 212
>gi|297293310|ref|XP_001101063.2| PREDICTED: exosome complex exonuclease RRP45 [Macaca mulatta]
Length = 432
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|348582824|ref|XP_003477176.1| PREDICTED: exosome complex component RRP45-like [Cavia porcellus]
Length = 439
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVAPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V E + PE
Sbjct: 165 VCVQGEEVTLYTPE 178
>gi|91081401|ref|XP_972667.1| PREDICTED: similar to exosome component 8 [Tribolium castaneum]
gi|270006123|gb|EFA02571.1| hypothetical protein TcasGA2_TC008282 [Tribolium castaneum]
Length = 271
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +KAEL +P A ++G + V+ P F G A++++ L
Sbjct: 53 VGRTTVVCGIKAELCQPKAEAANEGFLIPNVELPPLCSSKFRP-GPPTEQAQVATQLVAD 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L +DL +L + K+ W LY D + + DG L+DA A+ AAL + +P+
Sbjct: 112 ILKNSDC----LDLKTLCIFPDKLAWCLYADLICLDLDGALIDACVVALMAALKSVTLPA 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + A D + +V++ + + L + P+ TT
Sbjct: 168 VQY--DPALDNK-QVNVQERKALS--VTNTPIATTF 198
>gi|403411789|emb|CCL98489.1| predicted protein [Fibroporia radiculosa]
Length = 824
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 2 GSTDVIASVKAELGRPSAMQP----DKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSAL 57
G T+V+A+ K E+ +Q D G++A V CSP A P +EL ++++ L
Sbjct: 547 GGTEVLAAAKLEV---EDVQQGDGVDGGRIACSVTCSPAAYPYLTSNALDELQYDMTAVL 603
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
L + + +L ++ GK W L +D +V++ GN+ DA+ A +AAL +T
Sbjct: 604 HQTL------SHPSLHPKNLGILPGKKSWLLSLDVVVLADAGNVYDAVFMASRAALWDTK 657
Query: 118 IPSVH 122
+P
Sbjct: 658 VPRTR 662
>gi|73983962|ref|XP_533302.2| PREDICTED: exosome complex component RRP45 isoform 1 [Canis lupus
familiaris]
Length = 440
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|424811893|ref|ZP_18237133.1| RNase PH-related exoribonuclease [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756115|gb|EGQ39698.1| RNase PH-related exoribonuclease [Candidatus Nanosalinarum sp.
J07AB56]
Length = 260
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ +K ++ P +PD G + + +P A +E +E EL+ +
Sbjct: 48 IGDTQLVVGLKVDVEEPYDDRPDAGTLVTNAELAPMAAREYESGPPQEPGVELARVVDRG 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +D L + EG+ + L+ID V++ DGNLLDA A+L + +P
Sbjct: 108 IR-----EAPAVDFEELCIEEGEKVYTLFIDVHVLNDDGNLLDAAALGAMASLKDGFLPD 162
Query: 121 VHVAAEAASDEQPE 134
+ E EQPE
Sbjct: 163 YN-EEEGLLREQPE 175
>gi|330935982|ref|XP_003305202.1| hypothetical protein PTT_17982 [Pyrenophora teres f. teres 0-1]
gi|311317878|gb|EFQ86700.1| hypothetical protein PTT_17982 [Pyrenophora teres f. teres 0-1]
Length = 291
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA + ++ P + G I + SP A P FE + LS L+
Sbjct: 51 LGKTRVIARISVDVTTPLPERKFDGIFQIVTEFSPMASPAFEVGRPTDSEVILSRILEKA 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL ++ G C+ L D +I DG L+DA A+ AAL + P
Sbjct: 111 I--RRSNA---LDTESLCIIAGSKCFALRADVHIIDHDGGLIDASCIAVMAALQHFRRPD 165
Query: 121 VHVAAEAAS 129
V V E A+
Sbjct: 166 VVVEGEKAT 174
>gi|301776905|ref|XP_002923870.1| PREDICTED: exosome complex exonuclease RRP45-like [Ailuropoda
melanoleuca]
Length = 440
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|417400960|gb|JAA47389.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp45
[Desmodus rotundus]
Length = 440
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMASPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL V+ G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVIAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|410956922|ref|XP_003985085.1| PREDICTED: exosome complex component RRP45 [Felis catus]
Length = 445
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|119625656|gb|EAX05251.1| exosome component 9, isoform CRA_e [Homo sapiens]
Length = 242
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ ++ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|426345383|ref|XP_004040394.1| PREDICTED: exosome complex component RRP45 isoform 3 [Gorilla
gorilla gorilla]
Length = 392
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRHSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|281343292|gb|EFB18876.1| hypothetical protein PANDA_013099 [Ailuropoda melanoleuca]
Length = 456
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|393215116|gb|EJD00608.1| hypothetical protein FOMMEDRAFT_112158 [Fomitiporia mediterranea
MF3/22]
Length = 282
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 20/164 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A V A++ +P +P +G + I + SP A FE GR EE ++ L+
Sbjct: 50 LGKTRVLAHVDAKMVKPPEERPLEGIITIHSEISPMASSDFEPGRPSEE-EVLITRMLEK 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +S A +D SL V+ G+ W L + ++ GN+LD A AL + P
Sbjct: 109 VL--RRSDA---VDKESLCVLAGQRVWHLRLTIHFLADAGNMLDCACLAGMVALKHFRRP 163
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPL 163
V V I DE L PV +L PF L
Sbjct: 164 EVEV-------------IGDEVTLHSPEERAPVPLSLHHTPFCL 194
>gi|297674272|ref|XP_002815156.1| PREDICTED: exosome complex component RRP45 isoform 5 [Pongo abelii]
Length = 392
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|346971187|gb|EGY14639.1| exosome complex exonuclease RRP45 [Verticillium dahliae VdLs.17]
Length = 305
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI + AE+ P A +P G + + SP A P FE + LS L+
Sbjct: 51 LGKTRVIVRISAEVTVPHADRPFDGIFQLATELSPMASPHFEPGKPTDTEMLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D+ SL +V G W + D V+S DGN++DA A AAL + P
Sbjct: 111 I--RRSGA---LDMESLCLVAGAKVWSVRADVHVVSHDGNIVDAACLAAVAALRHFRKPD 165
Query: 121 VHVAAE 126
V E
Sbjct: 166 AQVDGE 171
>gi|122920907|pdb|2NN6|A Chain A, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 358
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ ++ C
Sbjct: 67 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERC 126
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 127 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 181
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 182 VSVQGDEVTLYTPE 195
>gi|402870363|ref|XP_003899196.1| PREDICTED: exosome complex component RRP45 isoform 3 [Papio anubis]
Length = 392
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|332820219|ref|XP_001154217.2| PREDICTED: exosome complex component RRP45 isoform 7 [Pan
troglodytes]
Length = 392
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|431899671|gb|ELK07625.1| Exosome complex exonuclease RRP45 [Pteropus alecto]
Length = 440
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|444721920|gb|ELW62627.1| Exosome complex component RRP45 [Tupaia chinensis]
Length = 438
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|149698257|ref|XP_001503169.1| PREDICTED: exosome complex component RRP45-like [Equus caballus]
Length = 440
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|402870361|ref|XP_003899195.1| PREDICTED: exosome complex component RRP45 isoform 2 [Papio anubis]
Length = 456
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|344277527|ref|XP_003410552.1| PREDICTED: exosome complex component RRP45 [Loxodonta africana]
Length = 439
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|355687576|gb|EHH26160.1| hypothetical protein EGK_16059 [Macaca mulatta]
gi|355749543|gb|EHH53942.1| hypothetical protein EGM_14660 [Macaca fascicularis]
Length = 456
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|114595906|ref|XP_001154031.1| PREDICTED: exosome complex component RRP45 isoform 4 [Pan
troglodytes]
Length = 456
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|452000347|gb|EMD92808.1| hypothetical protein COCHEDRAFT_1020759 [Cochliobolus
heterostrophus C5]
Length = 291
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA + ++ P + G I + SP A P FE + LS L+
Sbjct: 51 LGKTRVIARISVDVTTPPPERKFDGIFQIVTEFSPMASPAFEVGRPTDAEVILSRILEKA 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL ++ G C+ L D ++ DG L+DA A+ AAL + P
Sbjct: 111 I--RRSNA---LDTESLCIIAGLKCFALRADVHIVDHDGGLIDASCIAVMAALQHFRRPD 165
Query: 121 VHVAAEAAS 129
V V E A+
Sbjct: 166 VVVEGEKAT 174
>gi|426345381|ref|XP_004040393.1| PREDICTED: exosome complex component RRP45 isoform 2 [Gorilla
gorilla gorilla]
Length = 456
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRHSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|169783852|ref|XP_001826388.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Aspergillus oryzae RIB40]
gi|238493679|ref|XP_002378076.1| exosome complex endonuclease 2, putative [Aspergillus flavus
NRRL3357]
gi|83775132|dbj|BAE65255.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220696570|gb|EED52912.1| exosome complex endonuclease 2, putative [Aspergillus flavus
NRRL3357]
gi|391869452|gb|EIT78650.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp45 [Aspergillus
oryzae 3.042]
Length = 292
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T +I + +E+ +P +P G I ++ + P +E GR G+ L +S+ L
Sbjct: 51 LGKTSLIVRISSEVTKPHDDRPFDGIFTIALELTAMGSPAWENGRQGD-LETYVSNVLDR 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + +D SL V++G CW++ D + + DGNL+DA + A L + P
Sbjct: 110 VIRHSNA-----LDTESLCVLKGVSCWNVRADVHITNYDGNLIDAACIGVMAGLQHFRRP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V D Q V DE VPV +T P + H
Sbjct: 165 DAVV-----KDGQVIVYGVDER--------VPVALNITHKPLSVTFHTF 200
>gi|335293904|ref|XP_003129265.2| PREDICTED: exosome complex component RRP45-like [Sus scrofa]
Length = 440
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|297674268|ref|XP_002815154.1| PREDICTED: exosome complex component RRP45 isoform 3 [Pongo abelii]
gi|297674270|ref|XP_002815155.1| PREDICTED: exosome complex component RRP45 isoform 4 [Pongo abelii]
Length = 456
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|432097876|gb|ELK27905.1| Exosome complex component RRP45 [Myotis davidii]
Length = 423
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 33 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 92
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 93 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 147
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 148 VSVQGDEVTLYTPE 161
>gi|297829840|ref|XP_002882802.1| hypothetical protein ARALYDRAFT_341414 [Arabidopsis lyrata subsp.
lyrata]
gi|297328642|gb|EFH59061.1| hypothetical protein ARALYDRAFT_341414 [Arabidopsis lyrata subsp.
lyrata]
Length = 294
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V A+L +P +P++G +IF + SP A+P+FE E + EL +
Sbjct: 55 LGQTHVMAFVTAQLVQPYKDRPNEGSFSIFTEFSPMADPSFEPVHPGESAVELGRIIDRA 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDL 88
L + +D SL V GK+ W+L
Sbjct: 115 LRESRV-----VDTESLCVFAGKLVWNL 137
>gi|395845692|ref|XP_003795559.1| PREDICTED: exosome complex component RRP45 [Otolemur garnettii]
Length = 439
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A ALS+ P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALSHFRRPD 164
Query: 121 VHVAAEAAS 129
V V + +
Sbjct: 165 VSVQGDEVT 173
>gi|403290342|ref|XP_003936279.1| PREDICTED: exosome complex component RRP45 [Saimiri boliviensis
boliviensis]
Length = 440
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVAPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|451850324|gb|EMD63626.1| hypothetical protein COCSADRAFT_26966 [Cochliobolus sativus ND90Pr]
Length = 291
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA + ++ P + G I + SP A P FE + LS L+
Sbjct: 51 LGKTRVIARISVDVTTPPPERKFDGIFQIVTEFSPMASPAFEVGRPTDAEVILSRILEKA 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL ++ G C+ L D ++ DG L+DA A+ AAL + P
Sbjct: 111 I--RRSNA---LDTESLCIIAGLKCFALRADVHIVDHDGGLIDASCIAVMAALQHFRRPD 165
Query: 121 VHVAAEAAS 129
V V E A+
Sbjct: 166 VVVEGEKAT 174
>gi|114595908|ref|XP_001154164.1| PREDICTED: exosome complex component RRP45 isoform 6 [Pan
troglodytes]
gi|410265114|gb|JAA20523.1| exosome component 9 [Pan troglodytes]
gi|410292732|gb|JAA24966.1| exosome component 9 [Pan troglodytes]
Length = 439
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|393247723|gb|EJD55230.1| ribosomal protein S5 domain 2-like protein [Auricularia delicata
TFB-10046 SS5]
Length = 285
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 14/140 (10%)
Query: 1 MGSTD-VIASVKAELGRPSAMQPDK---GKVAIFVDCSPTAEPTFEGRGGE--ELSAELS 54
+G T+ VIAS++A++ RP QPD+ G + I + SP A +EG G E E++
Sbjct: 51 LGKTNRVIASIEAKMVRP---QPDRLFEGIITIHSELSPMASSEYEGGYGRPSEQEVEIT 107
Query: 55 SALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALS 114
L L +S A ID SL V+ G+ W L + ++ GN+LD A AL
Sbjct: 108 RMLDKVL--RRSDA---IDKESLCVLAGQRVWHLRLTFHFLADAGNMLDCACLAGITALK 162
Query: 115 NTGIPSVHVAAEAASDEQPE 134
+ P V V + + PE
Sbjct: 163 HFRRPEVEVVGDEVTIHAPE 182
>gi|297674264|ref|XP_002815152.1| PREDICTED: exosome complex component RRP45 isoform 1 [Pongo abelii]
gi|297674266|ref|XP_002815153.1| PREDICTED: exosome complex component RRP45 isoform 2 [Pongo abelii]
Length = 439
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|402870359|ref|XP_003899194.1| PREDICTED: exosome complex component RRP45 isoform 1 [Papio anubis]
gi|380813850|gb|AFE78799.1| exosome complex component RRP45 isoform 2 [Macaca mulatta]
Length = 439
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|116754658|ref|YP_843776.1| exosome complex RNA-binding protein Rrp42 [Methanosaeta thermophila
PT]
gi|116666109|gb|ABK15136.1| ribosomal RNA-processing protein RRP42 [Methanosaeta thermophila
PT]
Length = 257
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +K + G P P++G + + P A P FE E EL+ +
Sbjct: 52 LGKTQVMVGIKIQPGEPFPDAPNRGVIVTNAELVPLASPIFEPGPPNEYGIELARVVDR- 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
G +G+ +DL +L +V G+ W ++ID ++ GN++DA AAL +P+
Sbjct: 111 ---GVRESGS-VDLDALCIVPGEKVWIIFIDIHILDDCGNIMDASSLGAIAALLGATVPA 166
>gi|403170373|ref|XP_003329715.2| exosome complex component RRP45 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168691|gb|EFP85296.2| exosome complex component RRP45 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 288
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 27/167 (16%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V A V A + +P A +P +G I + +P A ++ E ++S L
Sbjct: 51 LGNTRVAAHVSASITKPWADRPFEGLFQISSEINPMANFIYDTGRSSENEIQISRMLDKS 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L +SG ID +L ++ G++ W + +D ++ +GNLLD A AAL
Sbjct: 111 L--SRSGV---IDKEALCILAGQMVWSIRLDLHFLNDEGNLLDCASIAAIAALQ------ 159
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHN 167
+ ++P+V + EE + + + +VP PL +H+
Sbjct: 160 --------TFQRPDVTLVGEE--------ITIHSIQERVPVPLTLHH 190
>gi|195480861|ref|XP_002101422.1| GE15642 [Drosophila yakuba]
gi|194188946|gb|EDX02530.1| GE15642 [Drosophila yakuba]
Length = 415
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+ V ++G P+ +P++GK+ + V+ A ++ S L+S L+
Sbjct: 56 MGDTKVLTHVTCDMGAPATSRPNEGKLQLNVNLGGVAFLDEVQTTHDQRSLTLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+S +DL SL V + W + +D V++ DGNL DA A AAL + P
Sbjct: 116 FRSSRS-----VDLESLCVAAEQHVWCIRVDVNVLNHDGNLYDASTIATLAALMHFRRPD 170
Query: 121 V 121
V
Sbjct: 171 V 171
>gi|426345379|ref|XP_004040392.1| PREDICTED: exosome complex component RRP45 isoform 1 [Gorilla
gorilla gorilla]
Length = 439
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRHSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|397490989|ref|XP_003816463.1| PREDICTED: exosome complex component RRP45 isoform 3 [Pan paniscus]
Length = 392
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D + + DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLFNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|403335752|gb|EJY67058.1| hypothetical protein OXYTRI_12647 [Oxytricha trifallax]
Length = 297
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 9/158 (5%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGK 65
+I ++KA+L +P +P KG++ ++ S T F EE S + + L + L
Sbjct: 59 IICAIKADLQKPLPSEPKKGQIKFHLESSQTGSSLF---TREEQSEIIKNRLLNILY--- 112
Query: 66 SGAGAGIDLSSLVVVEGKVCWDLYIDGLVISS-DGNLLDALGAAIKAALSNTGIPSVHVA 124
+ G ID L V EG+ W L +D LV+ LD +G AI++A + +P+V+
Sbjct: 113 TLYGNIIDREELNVFEGQFSWLLNVDILVMEELSFQQLDYIGLAIRSAFLDFQLPAVNAT 172
Query: 125 AEAASDEQPEVDISDEEFL-QFDTSGVPVITTLTKVPF 161
+ + EV + +E + Q +T + + + K PF
Sbjct: 173 LNNNTG-KIEVGLVEEIYEDQDNTDKLERLRSAAKAPF 209
>gi|397490987|ref|XP_003816462.1| PREDICTED: exosome complex component RRP45 isoform 2 [Pan paniscus]
Length = 456
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D + + DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLFNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|326430620|gb|EGD76190.1| hypothetical protein PTSG_00897 [Salpingoeca sp. ATCC 50818]
Length = 304
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 11/143 (7%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPT---FEGRGGEELSAELSSALQHC 60
TDV+ VK E+ P+ +PD+G + + S +A T + R ++++ L +
Sbjct: 71 TDVLVGVKVEVATPTDDRPDEGMLEFSIS-SSSANATVAALDARTADKMTRSLEFLAEQ- 128
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISS-DGNLLDALGAAIKAALSNTGIP 119
L S A +DL L ++ GK W + +D LV+ S GN+++ + AIKAAL +T IP
Sbjct: 129 -LQKTSHA---LDLKKLCILPGKAVWCVRVDVLVLQSLGGNVVECVFLAIKAALHDTTIP 184
Query: 120 SVHVAAEAASDEQPEVDISDEEF 142
+ + + ++ E + DIS +
Sbjct: 185 NCTLIKD-SNGEAVDFDISSNAY 206
>gi|159490978|ref|XP_001703450.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
gi|158280374|gb|EDP06132.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
Length = 296
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 33/173 (19%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
GST V+A V A L P +P +G + V+ SP A P FE G+ GE+ + +++ ++
Sbjct: 54 QGSTRVMAVVSAALEAPYPDRPSEGPLRFNVEFSPMASPAFEPGKPGED-AIQVARLIER 112
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKV-CWDLYIDGLVISSDGNLLDALGAAIKAALSNTGI 118
L +SGA +D +L V G+V W L +D V+ GNLLD A AAL
Sbjct: 113 GLR--QSGA---VDQEALWVGAGRVRVWALRVDCHVLDHGGNLLDCCFLAALAALMAFRK 167
Query: 119 PSVHVAAEAASD---EQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
P V V E+ S+ PEV + P PL +H+L
Sbjct: 168 PEVEVGGESGSEIIVHPPEV----------------------REPVPLTIHHL 198
>gi|268562221|ref|XP_002638538.1| C. briggsae CBR-EXOS-7 protein [Caenorhabditis briggsae]
Length = 300
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 3 STDVIASVKAELGR--PSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+TDV+A +K EL P+A + K ++ VD S A F G+GG++ E+S+A Q
Sbjct: 55 TTDVLAGIKLELESFDPAAEKEAKQPMSFHVDFSANASSQFAGKGGDQYGEEISAAFQ-- 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +LS ++ EG W + +D V+ G++ DA AI ALS+ +P
Sbjct: 113 -VAFSRSLDILPNLSKTLLAEGYR-WKINVDLSVLQWAGSVPDACSLAIIGALSDLEVPE 170
Query: 121 VHVA 124
V VA
Sbjct: 171 VEVA 174
>gi|213408869|ref|XP_002175205.1| exosome complex exonuclease RRP43 [Schizosaccharomyces japonicus
yFS275]
gi|212003252|gb|EEB08912.1| exosome complex exonuclease RRP43 [Schizosaccharomyces japonicus
yFS275]
Length = 274
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G + + +KAE+ P P +G + V+ P F+ EL+ +S + L
Sbjct: 63 GESVFVCGIKAEIAEPELEAPSRGWIVPNVEMGPLCNGKFKPGPPRELAQVVSEQMNQVL 122
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
+ L SL + E K W LY D + ++ DGN D A+ AL T +P+V
Sbjct: 123 -----EQTCLVPLESLCIREKKAAWCLYADIVCLNYDGNAFDCAWKALMHALETTRLPAV 177
Query: 122 HVAAEAASDEQPEVDISDEE 141
V E DE+ V + DE
Sbjct: 178 -VWDE---DEERVVCVHDER 193
>gi|194378034|dbj|BAG63380.1| unnamed protein product [Homo sapiens]
Length = 392
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ ++ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|397490985|ref|XP_003816461.1| PREDICTED: exosome complex component RRP45 isoform 1 [Pan paniscus]
Length = 439
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D + + DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLFNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|77812672|ref|NP_001029366.1| exosome complex component RRP45 isoform 1 [Homo sapiens]
gi|28172868|emb|CAD56889.1| polymyositis/scleroderma autoantigen 1 [Homo sapiens]
gi|119625652|gb|EAX05247.1| exosome component 9, isoform CRA_a [Homo sapiens]
Length = 456
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ ++ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|19113177|ref|NP_596385.1| exosome subunit Rrp43 (predicted) [Schizosaccharomyces pombe 972h-]
gi|1723274|sp|Q10205.1|RRP43_SCHPO RecName: Full=Exosome complex component rrp43; AltName:
Full=Ribosomal RNA-processing protein 43
gi|3451295|emb|CAA20427.1| exosome subunit Rrp43 (predicted) [Schizosaccharomyces pombe]
Length = 270
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G + +KAE+ P P++G + ++ SP F+ +L+ +S L L
Sbjct: 66 GENVFVCGIKAEIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTL 125
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
I+L SL + E K W LY D + ++ DG+ D AA+ AAL +P+
Sbjct: 126 -----QQSNLINLQSLCIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPT 179
>gi|50305471|ref|XP_452695.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641828|emb|CAH01546.1| KLLA0C11099p [Kluyveromyces lactis]
Length = 305
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEG--RGGEE---LSAELSS 55
MG+T V + E+ +P +P +G I + +P A FE GEE +S +
Sbjct: 51 MGNTKVHCRISCEIAQPYEDRPFEGLFHISTETTPMAGAQFENGNNTGEEEVLISRMIEK 110
Query: 56 ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
A++ +SGA +D+ L ++ G CW L D + DG L+DA A+ A L +
Sbjct: 111 AVR------RSGA---LDVEGLCIIAGSKCWSLRADVHFLDCDGGLIDASCIAVMAGLLH 161
Query: 116 TGIPSVHVAAEAAS 129
P V V E +
Sbjct: 162 FKKPDVTVLGERVT 175
>gi|396479694|ref|XP_003840816.1| similar to exosome complex endonuclease 2/ribosomal RNA processing
protein [Leptosphaeria maculans JN3]
gi|312217389|emb|CBX97337.1| similar to exosome complex endonuclease 2/ribosomal RNA processing
protein [Leptosphaeria maculans JN3]
Length = 291
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA + ++ P + G I + SP A P FE + LS L+
Sbjct: 51 LGKTRVIARISVDVTTPLPERKFDGIFQIVSEFSPMASPAFEIGRPTDAEVILSRILEKA 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL ++ G C+ L D VI DG L+DA A+ AAL + P
Sbjct: 111 I--RRSNA---LDTESLCIIAGLKCFALRADVHVIDHDGGLIDASCIAVMAALQHFRRPD 165
Query: 121 VHVAAEAAS 129
V V E A+
Sbjct: 166 VVVEGEKAT 174
>gi|169621181|ref|XP_001804001.1| hypothetical protein SNOG_13798 [Phaeosphaeria nodorum SN15]
gi|160704198|gb|EAT78822.2| hypothetical protein SNOG_13798 [Phaeosphaeria nodorum SN15]
Length = 292
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A + ++ P + G I + SP A P FE + LS L+
Sbjct: 51 LGKTRVVARISIDVTTPLPERKFDGVFQIVTEFSPMASPAFEIGRPTDAEVILSRILEKA 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL ++ G C+ L D VI DG L+DA A+ AAL + P
Sbjct: 111 I--RRSNA---LDTESLCIIAGLKCFALRADVHVIDHDGGLIDASCIAVMAALQHFRRPD 165
Query: 121 VHVAAEAAS 129
V V E A+
Sbjct: 166 VLVEGEKAT 174
>gi|119625657|gb|EAX05252.1| exosome component 9, isoform CRA_f [Homo sapiens]
Length = 423
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ ++ C
Sbjct: 34 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERC 93
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 94 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 148
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 149 VSVQGDEVTLYTPE 162
>gi|410671928|ref|YP_006924299.1| 3' exoribonuclease [Methanolobus psychrophilus R15]
gi|409171056|gb|AFV24931.1| 3' exoribonuclease [Methanolobus psychrophilus R15]
Length = 255
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G T+V+ VK + G P +G + ++ +P A P FE +E + E++ +
Sbjct: 49 GETEVLVGVKVQAGAPFPDSAGEGVIITSLELNPLASPEFEAGPPKEGAIEMARVTDRGI 108
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+SGA IDLS L + +G+ W ++ID V++ GN+ DA AAL T IP+
Sbjct: 109 R--ESGA---IDLSKLCITKGEEVWIIFIDIHVLNDAGNIQDASSLGAIAALMTTTIPA 162
>gi|225711778|gb|ACO11735.1| Exosome complex exonuclease RRP43 [Caligus rogercresseyi]
Length = 279
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 8/153 (5%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGG--EELSAELSSALQH 59
G T VI + ++ P KG + VD P G E + L+ +
Sbjct: 58 GHTTVICGITLQIASLDEETPTKGYIVPHVDLPSMCHPRIYKSKGPTAEEAMILTKFIMD 117
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+L + +D L +V G++ W L ID ++ DGNL DAL A+ AL + P
Sbjct: 118 VILNSEV-----VDPKDLCIVPGEIVWVLKIDLTCLNQDGNLRDALVTALILALKSLRFP 172
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPV 152
V V+ +A +++ ++++ ++E +PV
Sbjct: 173 KV-VSYKAEDEDKTQINVFEKEHSSLRLKNIPV 204
>gi|340505571|gb|EGR31888.1| hypothetical protein IMG5_100370 [Ichthyophthirius multifiliis]
Length = 355
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 65/143 (45%), Gaps = 10/143 (6%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEG-RGGEELSAELSSALQHC 60
G T + + + P +P++G + VD S T + + + +E S E+ L+
Sbjct: 49 GDTHIATKTHSSITDPKKEKPNEGFLFFKVDLSSTQDEQQQNLQNFKEYSNEIQKLLEKI 108
Query: 61 LLGGKSG---------AGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKA 111
+ G K ID++SL ++ GK W++ ++ VIS+ GNL+D + +
Sbjct: 109 IKGSKQFFQFKTKQKIYKRAIDVASLCIITGKKVWNITVETSVISNGGNLIDNIYLCVMI 168
Query: 112 ALSNTGIPSVHVAAEAASDEQPE 134
+L + P + + ++ P+
Sbjct: 169 SLLHFRKPYISIEQQSKIKIHPD 191
>gi|167045226|gb|ABZ09886.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8O8]
Length = 273
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS----PTAEPTFEGRGGEELSAELSSA 56
+G T+V+A VK + RP PD G+ IF+ C+ P A P+ E + E++
Sbjct: 54 LGDTEVVAGVKIQPDRPF---PDMGEKGIFI-CTAEILPLAHPSVETGPPQPYVIEIARV 109
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + +SG IDLS +V+V+ K L+ D +V DGNL DA A AA+ +
Sbjct: 110 VDRGI--RESGM---IDLSQMVLVKDKSVIGLFADNVVTDHDGNLFDACSYASTAAVLTS 164
Query: 117 GIPS 120
+P
Sbjct: 165 KMPK 168
>gi|393248126|gb|EJD55633.1| ribosomal protein S5 domain 2-like protein [Auricularia delicata
TFB-10046 SS5]
Length = 310
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T+V+AS K E+ D+G +A V C +A PT ++L+A+ + L H
Sbjct: 50 IGGTEVLASAKLEV-----TDADRGAIACNVVCPVSAYPTLAPGALDDLAADHTHVL-HS 103
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+LG S + +L ++ K W L +D LV++ GN+ DAL A + AL +T +P
Sbjct: 104 VLGDPS-----LVPDTLTIIPKKKAWLLTLDLLVMADAGNIYDALFLAARIALIDTRVPR 158
>gi|392587997|gb|EIW77330.1| ribosomal protein S5 domain 2-like protein [Coniophora puteana
RWD-64-598 SS2]
Length = 303
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 18/161 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V A++ +P +P +G + I + SP A P ++ E +S L
Sbjct: 56 LGKTRVLAQVDAKMVKPLPERPYEGLITIHSEISPMAGPEYDTARPSEEEIGISRMLDKI 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL V+ G+ W L + IS GN+LD A AL + P
Sbjct: 116 V--KRSDA---LDKESLCVLAGQRVWHLRLTVHFISDAGNMLDCAVLASMVALRHFRRPE 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPF 161
V V I DE + + PV L +P
Sbjct: 171 VEV-------------IGDEVIIHSPSERAPVPLALHHIPL 198
>gi|77812670|ref|NP_005024.2| exosome complex component RRP45 isoform 2 [Homo sapiens]
gi|147744559|sp|Q06265.3|EXOS9_HUMAN RecName: Full=Exosome complex component RRP45; AltName:
Full=Autoantigen PM/Scl 1; AltName: Full=Exosome
component 9; AltName: Full=P75 polymyositis-scleroderma
overlap syndrome-associated autoantigen; AltName:
Full=Polymyositis/scleroderma autoantigen 1; AltName:
Full=Polymyositis/scleroderma autoantigen 75 kDa;
Short=PM/Scl-75
gi|28172864|emb|CAD44530.1| polymyositis/scleroderma autoantigen 1 [Homo sapiens]
gi|119625653|gb|EAX05248.1| exosome component 9, isoform CRA_b [Homo sapiens]
Length = 439
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ ++ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|340386062|ref|XP_003391527.1| PREDICTED: putative exosome complex exonuclease RRP42-like, partial
[Amphimedon queenslandica]
Length = 155
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 80 VEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISD 139
+ G+ CW +Y+D LV+ G +LD L A+K AL+NT IP + V E E SD
Sbjct: 1 IPGQDCWIIYVDALVLEYSGGVLDCLSIAVKGALANTKIPKLTVIGEGEEQEIEI---SD 57
Query: 140 EEF--LQFDTSGVPVITTLTKVPFPLIV 165
F DT+ VPV +L+ + IV
Sbjct: 58 NPFDSTSIDTNNVPVFVSLSLIGNQFIV 85
>gi|146218577|gb|AAI40040.1| Exosome component 9 [synthetic construct]
gi|146218579|gb|AAI40039.1| Exosome component 9 [synthetic construct]
gi|148745755|gb|AAI42979.1| Exosome component 9 [Homo sapiens]
Length = 439
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ ++ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|302903929|ref|XP_003048964.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729898|gb|EEU43251.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 293
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G T V+A V AE+ P + +P G I + SP P++E LS L+
Sbjct: 51 YGKTRVLAKVTAEVTVPYSDRPFDGVFTITSELSPMVAPSYEVNRPSLEEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
+ +SGA +D SL ++ G+ CW + +D V++ DGNL D
Sbjct: 111 V--RRSGA---LDTESLCLIAGQKCWSIRVDLHVLTHDGNLTD 148
>gi|340371255|ref|XP_003384161.1| PREDICTED: exosome complex component RRP45-like [Amphimedon
queenslandica]
Length = 410
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V A V E+ P +P G + V SP A P ++ G L+ + L C
Sbjct: 54 IGETRVQACVGCEVVVPRPQRPTDGLLYFNVLPSPMAAPNYDI-GKSSLTMRVERLLDRC 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+S +D SL ++ G+ W + +D +++ GN+ D A AL + P
Sbjct: 113 FKESRS-----LDTESLCIIAGQKVWSIRVDIHILNDSGNITDCCVMASFCALKHCRRPY 167
Query: 121 VHVAAEAAS 129
V V+ E A+
Sbjct: 168 VTVSGEHAT 176
>gi|385806381|ref|YP_005842779.1| exosome complex RNA-binding protein Rrp42 [Fervidicoccus fontis
Kam940]
gi|383796244|gb|AFH43327.1| exosome complex RNA-binding protein Rrp42 [Fervidicoccus fontis
Kam940]
Length = 274
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK E G P P++G + + + P A P FE +E + EL+ +
Sbjct: 58 LGDTLVLVGVKVEPGAPYPDNPNEGVLMVNAEFVPLASPAFEPGPPDENAYELARIIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
K+ I L L +V G+ ++ D V++ GNL+DA A AL NT IP
Sbjct: 118 YRESKA-----IGLGELALVPGQKVLVVWNDIYVLNHSGNLIDASAIASLVALMNTRIP 171
>gi|118486664|gb|ABK95169.1| unknown [Populus trichocarpa]
Length = 403
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 26/160 (16%)
Query: 10 VKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGA 68
V +L +P + ++G + IF + SP A+P+FE GR GE + EL + L ++
Sbjct: 4 VTGQLVQPYQDRRNEGMLLIFTEFSPMADPSFEPGRPGES-AVELGRIVDRGLRESRA-- 60
Query: 69 GAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAA 128
+D SL V+ GK+ W + ID ++ + GNL+DA A AAL P +
Sbjct: 61 ---VDTESLCVLSGKLVWAIRIDLHILDNGGNLVDAANIAALAALLTFRRPECTLGG--- 114
Query: 129 SDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
D+ EV + E + P PLIVH+L
Sbjct: 115 -DDGQEVTVHPPE---------------EREPLPLIVHHL 138
>gi|156841697|ref|XP_001644220.1| hypothetical protein Kpol_1051p10 [Vanderwaltozyma polyspora DSM
70294]
gi|156114858|gb|EDO16362.1| hypothetical protein Kpol_1051p10 [Vanderwaltozyma polyspora DSM
70294]
Length = 305
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V V + +P +P +G I + SP A P FE G E + ++
Sbjct: 51 MGNTKVQCRVSCSIAQPYEDRPFEGLFFISTESSPMAGPQFENGNNTGEDEVLCARIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D ++ DG +DA A+ AAL + P
Sbjct: 111 AV--RRSGA---LDIEGLCIVAGSKCWAIRADVHFLNCDGGFIDASCIAVMAALMHFRKP 165
Query: 120 SVHVAAEAAS 129
+ V E +
Sbjct: 166 DISVFGEQVT 175
>gi|196007548|ref|XP_002113640.1| hypothetical protein TRIADDRAFT_14906 [Trichoplax adhaerens]
gi|190584044|gb|EDV24114.1| hypothetical protein TRIADDRAFT_14906, partial [Trichoplax
adhaerens]
Length = 267
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 10/156 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G++ V+A EL RP +P++G++ V+ SP A P + L L+ C
Sbjct: 47 LGASRVLAVTTCELIRPIT-RPEEGRLLFNVELSPMASPLNHSNDVIDRRIALERRLEQC 105
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ A IDL SL V+ G+ W + + V+ GN+LD A A+L++ P
Sbjct: 106 FV-----ESAAIDLESLCVIAGEKVWFIRVAIHVLDDVGNILDCASIAAIASLAHFRRPQ 160
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V V E + + ++++++ + +P+ T
Sbjct: 161 VTVVGEDVTIH----NRNEKDYIPLNIHHMPLCITF 192
>gi|403346784|gb|EJY72799.1| Polymyositis/scleroderma autoantigen 1 [Oxytricha trifallax]
Length = 463
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 15/159 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSP---TAEPTFEGRGGEELSAELSSAL 57
+G T ++ +L P +P++G + S +AE T E+ +++ +
Sbjct: 49 IGKTHILTQASLKLVSPQPGKPNEGFFRFNTEFSSLLHSAEYTSSINTLSEMRVDITRFI 108
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
L + D SL +V+G++ W L +D +++ DGN++DA A L NT
Sbjct: 109 DKVL-----KSSRATDRESLCIVQGRLVWSLSVDLFLLNEDGNVMDACFIASVLCLMNTR 163
Query: 118 IPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
+P V ++ + +V I+ E+ + +P+ TT
Sbjct: 164 LPEVTISKD-------QVKINYEKVKYLNVHHIPICTTF 195
>gi|349603366|gb|AEP99224.1| Exosome complex exonuclease RRP43-like protein, partial [Equus
caballus]
Length = 197
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 72 IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDE 131
I L + GK+ W LY D + + DGN+LDA A+ AAL N +P V ++ E A
Sbjct: 40 IQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTISEETA--- 96
Query: 132 QPEVDISDEEFLQFDTSGVPVITTL 156
EV++ + FL T PV T+
Sbjct: 97 LAEVNLKKKSFLNIRTH--PVATSF 119
>gi|452823313|gb|EME30324.1| exosome complex component RRP45 [Galdieria sulphuraria]
Length = 389
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTA------EPTFEGRGGEEL--SAE 52
+G T V +S AE+ P+ +P +G V VD SP A E + GR L +AE
Sbjct: 50 LGKTKVFSSAIAEVVEPTIDRPAEGFVTFSVDLSPMASENLMLEYLYSGRTSSTLEEAAE 109
Query: 53 LSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAA 112
+ LQ + ++ ID +L +V G W + +D V+ GN+LDA A A+
Sbjct: 110 IVRFLQQIIRENQA-----IDTETLCIVAGVQVWAIRVDIHVLDHCGNVLDACCMAAVAS 164
Query: 113 LSNTGIPSVHV 123
L + P V V
Sbjct: 165 LLHMRKPVVTV 175
>gi|402217991|gb|EJT98069.1| ribosomal protein S5 domain 2-like protein [Dacryopinax sp. DJM-731
SS1]
Length = 299
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 14/147 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEE---------LS 50
+G T V+A + A + RP +P +G + I + SP A +E GR EE +
Sbjct: 51 IGETRVVAQISATVTRPYFDRPFEGIIVIHTEFSPMASSAYETGRPSEEEITMARILEKT 110
Query: 51 AELSSALQH---CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGA 107
S AL C+L G+ + + ++ +V G+ W L + ++ +GNLLD
Sbjct: 111 IRRSEALDREALCILAGQKVSVPHRETNT-KIVRGQQVWTLRLTIQFLADEGNLLDCACM 169
Query: 108 AIKAALSNTGIPSVHVAAEAASDEQPE 134
A AAL + P V V + A+ PE
Sbjct: 170 AAMAALRHFRKPEVEVVGDEATMFSPE 196
>gi|440908962|gb|ELR58930.1| Exosome complex exonuclease RRP45 [Bos grunniens mutus]
Length = 446
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAAS 129
V V + +
Sbjct: 165 VSVQGDEVT 173
>gi|32566065|ref|NP_508024.2| Protein EXOS-7 [Caenorhabditis elegans]
gi|24817316|emb|CAB07377.2| Protein EXOS-7 [Caenorhabditis elegans]
Length = 312
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 17/170 (10%)
Query: 3 STDVIASVKAELGRPSAMQPDKGK--VAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+TDV+A +K EL A + K + VD S A F G+GG+E + ELS+A Q
Sbjct: 55 TTDVLAGIKLELESYDAETEKEPKQPINFNVDFSANASSQFAGKGGDEYAEELSAAFQAA 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L+ + +G W + +D V+ DG++ DA+ AI ALS+ P
Sbjct: 115 Y---SKALDIMPNLAKTQLADGYR-WKINVDISVLQWDGSVSDAISIAIIGALSDLEFPE 170
Query: 121 VHVAAEAASD-----EQPEV--DISDEE----FLQFDTSGVPVITTLTKV 159
VA + ++P+V ++ DE + D P++ T++K+
Sbjct: 171 GDVAPDDGGKVRIVLKRPKVAGNVRDENVQVAMWKLDVMRCPLLLTISKI 220
>gi|190345706|gb|EDK37633.2| hypothetical protein PGUG_01731 [Meyerozyma guilliermondii ATCC
6260]
Length = 312
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G+T + V AE+ +P +P +G I + SP A P FE + +S ++ +
Sbjct: 60 GNTKLAVRVSAEIAKPYDDRPFEGIFTINTEISPMASPQFENGKNSDDEVLVSRIVEKAI 119
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
+S A +DL SL +V G W + D + DG L+DA + AL + P V
Sbjct: 120 --RRSNA---LDLESLCIVAGSKVWAVRADVNFLDFDGGLIDACALGVMVALQHFRKPDV 174
Query: 122 HVAAEA 127
+ E+
Sbjct: 175 SIDGES 180
>gi|78045505|ref|NP_001030225.1| exosome complex component RRP45 [Bos taurus]
gi|122140086|sp|Q3SWZ4.1|EXOS9_BOVIN RecName: Full=Exosome complex component RRP45; AltName:
Full=Exosome component 9
gi|74356309|gb|AAI04588.1| Exosome component 9 [Bos taurus]
Length = 440
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAAS 129
V V + +
Sbjct: 165 VSVQGDEVT 173
>gi|395545183|ref|XP_003774484.1| PREDICTED: exosome complex component RRP45 isoform 1 [Sarcophilus
harrisii]
Length = 439
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAE 126
V V +
Sbjct: 165 VSVQGD 170
>gi|393216212|gb|EJD01703.1| hypothetical protein FOMMEDRAFT_88508 [Fomitiporia mediterranea
MF3/22]
Length = 294
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ VKAE+ P P+ G + +D P F+ + + LS L
Sbjct: 77 LGDTTIVCGVKAEIAEPELDSPELGFIVPNLDLPAICSPKFKPGPPADEAQVLSERLYDA 136
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L+ ++ + L SL + K W LY+D I+ DGN+ DA A+ AAL NT +P
Sbjct: 137 LISSET-----VSLPSLCIHPRKAVWVLYVDATCINFDGNVFDAALLAMIAALKNTRLP 190
>gi|426231206|ref|XP_004009631.1| PREDICTED: exosome complex component RRP45 [Ovis aries]
Length = 440
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAAS 129
V V + +
Sbjct: 165 VSVQGDEVT 173
>gi|395545185|ref|XP_003774485.1| PREDICTED: exosome complex component RRP45 isoform 2 [Sarcophilus
harrisii]
Length = 453
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAE 126
V V +
Sbjct: 165 VSVQGD 170
>gi|296486842|tpg|DAA28955.1| TPA: exosome complex exonuclease RRP45 [Bos taurus]
Length = 440
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAAS 129
V V + +
Sbjct: 165 VSVQGDEVT 173
>gi|291401826|ref|XP_002717277.1| PREDICTED: exosome component 9 [Oryctolagus cuniculus]
Length = 440
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVAPKLNRATEGILFCNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K +D SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----MDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>gi|424814254|ref|ZP_18239432.1| RNase PH-related exoribonuclease [Candidatus Nanosalina sp.
J07AB43]
gi|339757870|gb|EGQ43127.1| RNase PH-related exoribonuclease [Candidatus Nanosalina sp.
J07AB43]
Length = 262
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + ++ P + +P+ G + + +P A+ FE E EL+ +
Sbjct: 48 IGDTKVLVGISIDVEEPYSDRPESGTIVTNAELAPMADRDFESGPPREPGVELARVVDRG 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ IDL L + G+ + ++ID V+++DGNL+D A AAL + +P+
Sbjct: 108 IRESEA-----IDLEELCIEPGEKVYTVFIDIHVLNNDGNLIDCSSLAAMAALKSGHLPA 162
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
+ + +Q DI + + PV T+ K+
Sbjct: 163 YSTEERSLNRDQKWKDI--------ELTTEPVTATVCKI 193
>gi|195457250|ref|XP_002075492.1| GK14785 [Drosophila willistoni]
gi|194171577|gb|EDW86478.1| GK14785 [Drosophila willistoni]
Length = 415
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V ++G PS+ +P++G + + V A ++ L+S L+
Sbjct: 56 IGDTKVLAQVSCDIGTPSSARPNEGTLHLNVSLGGVAYLNESQTTHDQRFLTLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+S +DL SL V + W + +D V++ DGNL DA A AAL + P
Sbjct: 116 FRNSRS-----LDLESLCVAAEQHVWCVRVDITVLNHDGNLYDASTVAALAALMHFRRPD 170
Query: 121 V 121
V
Sbjct: 171 V 171
>gi|126330624|ref|XP_001362799.1| PREDICTED: exosome complex component RRP45-like isoform 1
[Monodelphis domestica]
Length = 438
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAE 126
V V +
Sbjct: 165 VSVQGD 170
>gi|118576718|ref|YP_876461.1| RNase PH-related exoribonuclease [Cenarchaeum symbiosum A]
gi|118195239|gb|ABK78157.1| RNase PH-related exoribonuclease [Cenarchaeum symbiosum A]
Length = 270
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 74/163 (45%), Gaps = 21/163 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS----PTAEPTFEGRGGEELSAELSSA 56
+G TDV+ VK + RP PD G IF+ C+ P A P E EL+
Sbjct: 54 LGRTDVVTGVKVQPDRPF---PDVGDRGIFI-CTAEILPLAHPDVETGPPSPAVIELARV 109
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + +SG +DLS LV+++ K ++ D VI DGNL DA A AA+
Sbjct: 110 VDRGIR--ESGM---VDLSKLVLLKDKSVIGIFADSSVIDVDGNLFDACSYAATAAILTA 164
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
+P + DE P V I E + T +PV T+ K+
Sbjct: 165 KLPKWEI-----QDEAP-VRIEGETPVPVTT--IPVSVTMAKI 199
>gi|126459545|ref|YP_001055823.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum calidifontis
JCM 11548]
gi|126249266|gb|ABO08357.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum calidifontis
JCM 11548]
Length = 274
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 14/107 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSA---- 56
+G T V+A VK LG+P PD+G + + + P A P E +E + EL+
Sbjct: 59 LGKTHVVAGVKIGLGQPFPDAPDEGVLVVNAEVLPHASPYTEVGPPDEFAIELARVVDRG 118
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
L+HC +D L V EG + L++D VI+ DGNL+D
Sbjct: 119 LRHC---------GYVDFKKLSV-EGGKAYVLWVDLYVINDDGNLVD 155
>gi|302685534|ref|XP_003032447.1| hypothetical protein SCHCODRAFT_15142 [Schizophyllum commune H4-8]
gi|300106141|gb|EFI97544.1| hypothetical protein SCHCODRAFT_15142 [Schizophyllum commune H4-8]
Length = 281
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
G T V+A V A++ RP +P G + I + SP A +E GR EE ++ L
Sbjct: 50 FGQTRVVAQVDAKMVRPPPERPFDGIITIHSELSPMASTEYEIGRASEE-EVVITRVLDK 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ ++ +D SL V+ G+ W + + ++ GN+LD A AAL + P
Sbjct: 109 LIKRSEA-----VDRESLCVLAGERVWHVRLTIHCLADAGNMLDCACFAAMAALKHFRRP 163
Query: 120 SVHVAAEAASDEQP 133
V V + + P
Sbjct: 164 DVEVVGDEVTIHPP 177
>gi|50290581|ref|XP_447723.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527034|emb|CAG60670.1| unnamed protein product [Candida glabrata]
Length = 303
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V + ++ P +P +G I + SP A P FE G E + ++
Sbjct: 51 MGKTLVQCRISCQITEPYEDRPFEGLFVISTEISPMAGPQFENGNSTGEDEVLCARIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D ++ DG +DA A+ AALS+ P
Sbjct: 111 AV--RRSGA---LDVEGLCIVAGSKCWAVRADVHYLNCDGGFIDASCIAVMAALSHFRKP 165
Query: 120 SVHVAAE 126
+ V E
Sbjct: 166 DISVHGE 172
>gi|330804424|ref|XP_003290195.1| hypothetical protein DICPUDRAFT_154682 [Dictyostelium purpureum]
gi|325079706|gb|EGC33294.1| hypothetical protein DICPUDRAFT_154682 [Dictyostelium purpureum]
Length = 303
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V S+ ++ P +P++G D SP + + + G L EL ++
Sbjct: 49 LGKTRVYTSITCDIVEPKPERPNEGFYVFNTDISPMSSVSVDPNRGNPLENELGRIIEKG 108
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ ID SL ++ G W + I ++ GNLLD ++ AAL + P
Sbjct: 109 LKESRA-----IDTESLCIISGSKVWSIKISIHILDDCGNLLDCASISVIAALLHFRKPD 163
Query: 121 VHVAAEAAS----DEQPEVDIS 138
V V A+ DE+ V +S
Sbjct: 164 VTVIGNEATIHPIDEREPVPLS 185
>gi|390595104|gb|EIN04511.1| ribosomal protein S5 domain 2-like protein [Punctularia
strigosozonata HHB-11173 SS5]
Length = 290
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 7/135 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A +++ L RP +P +G ++I + SP A +E GR EE ++ L
Sbjct: 50 LGKTKVMAHIESRLVRPPPERPYEGIISIHSEVSPMASSEYEAGRPSEE-EVTITRMLDK 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + +D SL ++ G+V W L + ++ GN+LD A AL + P
Sbjct: 109 VIRRSDT-----VDKESLCILAGQVVWHLRLTLHFLADAGNVLDCACLASIVALRHFRRP 163
Query: 120 SVHVAAEAASDEQPE 134
V V E QP+
Sbjct: 164 EVEVVGEDVVLHQPD 178
>gi|428672169|gb|EKX73083.1| 3' exoribonuclease family, domain 1 containing protein [Babesia
equi]
Length = 305
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G+T V +SV AE+ P++ +P++G + + P +E EL +S C
Sbjct: 61 FGNTTVFSSVCAEVVEPNSERPNEGFLFFNAELMPLTSGLYEPGKASELEQNIS-----C 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++L SL + GK W + + V+ DGNL D + A+L + I
Sbjct: 116 FIESVFKESGSLNLESLCITSGKHVWAIRVYIHVLQDDGNLFDVCSFSALASLLHYRIQE 175
Query: 121 VHVA 124
V V
Sbjct: 176 VKVV 179
>gi|390366534|ref|XP_783510.2| PREDICTED: exosome complex component RRP43-like [Strongylocentrotus
purpuratus]
Length = 279
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 18/161 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIF----VDCSPTAEPTFEGRGGEELSAELSSA 56
+G+T V+ +K E P+ +P KG + VD P F+ G + A+++S
Sbjct: 53 LGNTTVVCGIKGEFASPTVEEPKKGYLVYLTFPNVDLPPLCSAQFKP-GPPSIQAQVTSQ 111
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L + + ++ L + EG + W LY D + + DGN++DA A+ AAL N
Sbjct: 112 L----VADTLLSSNLLNYEDLCIKEGNMVWVLYCDMMCLDYDGNIIDACLIALLAALRNV 167
Query: 117 GIPSVHV-----AAEAASDEQPEVDISDE----EFLQFDTS 148
+P V + AE +S E ++I ++ F FD S
Sbjct: 168 RLPVVTIDEDTGLAELSSTEDRSLNIVNQFAATTFSVFDDS 208
>gi|146420206|ref|XP_001486060.1| hypothetical protein PGUG_01731 [Meyerozyma guilliermondii ATCC
6260]
Length = 312
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 9/141 (6%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G+T + V AE+ +P +P +G I + SP A P FE + +S ++ +
Sbjct: 60 GNTKLAVRVLAEIAKPYDDRPFEGIFTINTEISPMASPQFENGKNSDDEVLVSRIVEKAI 119
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
+S A +DL SL +V G W + D + DG L+DA + AL + P V
Sbjct: 120 --RRSNA---LDLESLCIVAGSKVWAVRADVNFLDFDGGLIDACALGVMVALQHFRKPDV 174
Query: 122 HVAAEA----ASDEQPEVDIS 138
+ E+ + DE+ V +S
Sbjct: 175 SIDGESIVVHSMDERQPVALS 195
>gi|365984549|ref|XP_003669107.1| hypothetical protein NDAI_0C02040 [Naumovozyma dairenensis CBS 421]
gi|343767875|emb|CCD23864.1| hypothetical protein NDAI_0C02040 [Naumovozyma dairenensis CBS 421]
Length = 306
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V + ++ +P +P +G I + SP A P FE G E ++ ++
Sbjct: 51 MGKTKVHCRISCQITQPYEDRPFEGLFLISTENSPMAGPQFENGNNTNEDEVLIARIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D ++ DG +DA A+ A L + P
Sbjct: 111 AV--RRSGA---LDIEGLCIVAGSKCWAVRADVHFLNCDGGFIDASCIAVMAGLLHFRKP 165
Query: 120 SVHVAAE 126
+ V E
Sbjct: 166 DITVHGE 172
>gi|395328492|gb|EJF60884.1| ribosomal protein S5 domain 2-like protein [Dichomitus squalens
LYAD-421 SS1]
Length = 281
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V+A V ++ +P +P +G ++I + SP A +E GR EE A L+ L
Sbjct: 51 MGKTRVLAQVDGKMVKPPPERPLEGIISIHSELSPMASNEYEPGRPTEEEVA-LTRMLDK 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +S A +D SL V+ G+ W + + V+S GN++D A AL + P
Sbjct: 110 VL--RRSDA---VDKESLCVLAGQRVWHIRLTIHVLSDAGNMVDCACLAGIVALKHFRRP 164
Query: 120 SVHVAAEAASDEQP 133
V V + + P
Sbjct: 165 EVEVEGDEITVHHP 178
>gi|389743838|gb|EIM85022.1| ribosomal protein S5 domain 2-like protein [Stereum hirsutum
FP-91666 SS1]
Length = 327
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 16/161 (9%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G T+V+ +VK E+ S G++ V CSP+A P ++L + ++ L L
Sbjct: 60 GGTEVLGAVKLEVENVSGKT--DGRIVCSVSCSPSAYPHLSTGALDDLQYDYTTLLHQTL 117
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP-- 119
+ + S+L +++GK W L +D +V+S GN+ DAL A +AAL +T +P
Sbjct: 118 ------SHPSLHPSTLGIIKGKKAWLLSLDLVVLSDSGNVYDALFMAARAALWDTKVPRT 171
Query: 120 -SVHVAAEAASDEQ-----PEVDISDEEFLQFDTSGVPVIT 154
S+ A A Q ++D+ ++ FDT V T
Sbjct: 172 RSIEYRANAKGGAQFGGGRADMDVDEDNKSGFDTRQVAAAT 212
>gi|260950159|ref|XP_002619376.1| hypothetical protein CLUG_00535 [Clavispora lusitaniae ATCC 42720]
gi|238846948|gb|EEQ36412.1| hypothetical protein CLUG_00535 [Clavispora lusitaniae ATCC 42720]
Length = 305
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T + V E+G+P +P +G I + S A P FE + +S ++
Sbjct: 52 LGDTKLAVRVSCEIGKPFEDRPFEGTFTINTEISSMASPMFENGKNSDEEVLISRLIEKA 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +DL SL V+ G+ W + D ++ DG L+DA + AL + P
Sbjct: 112 V--RRSNA---LDLESLCVIAGEKVWHIRADINFLNYDGGLIDASCIGVMTALQHFKKPD 166
Query: 121 VHV 123
V +
Sbjct: 167 VSI 169
>gi|145476653|ref|XP_001424349.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391413|emb|CAK56951.1| unnamed protein product [Paramecium tetraurelia]
Length = 299
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 6/131 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V A+ A + P+ ++P +G + +D + + +L E+ ++
Sbjct: 43 LGETRVFATTSASITTPNPIRPSEGFLKFHLDLQVLRDTGY-MHNPIKLGMEIEKYIEKV 101
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ G K+ +D SL ++ GK W + ++ +I++DGNLLDA+ +L + P
Sbjct: 102 IKGSKA-----LDTESLCILSGKNVWSIDVNVALINNDGNLLDAMYLCCIFSLQHFRRPQ 156
Query: 121 VHVAAEAASDE 131
V V+ + E
Sbjct: 157 VSVSLQGVKVE 167
>gi|339239765|ref|XP_003375808.1| exosome complex exonuclease RRP45 [Trichinella spiralis]
gi|316975514|gb|EFV58947.1| exosome complex exonuclease RRP45 [Trichinella spiralis]
Length = 448
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 10/156 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G+T V + PS +P G + I ++ P A +E G E E L+
Sbjct: 66 FGNTKVFVKTSCSVVTPSLTRPSSGILKINLEFGPQAVAHYEV-GRLEKCIEYQRLLERN 124
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + + L +L ++ G+ W + D V+++DG+L+D AI +AL + IPS
Sbjct: 125 IKDARC-----VCLDTLCIISGEKVWQIRCDVYVLNNDGSLVDCACVAILSALRHFRIPS 179
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V +D D+E L+ D P + TL
Sbjct: 180 V---TRHGTDYTIH-SFDDKEPLRLDIFHYPCMITL 211
>gi|336368904|gb|EGN97246.1| hypothetical protein SERLA73DRAFT_123997 [Serpula lacrymans var.
lacrymans S7.3]
Length = 323
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 24/160 (15%)
Query: 2 GSTDVIASVKAELGRPSAMQ-PDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G T+++A+VK E+ + + D G+V V CSP A P ++L +L+S L
Sbjct: 62 GGTEILAAVKLEVETVADGEGVDGGRVVGTVSCSPAAYPHLPSGALDDLQHDLTSVLHDT 121
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP- 119
V K W L +D +V+S DGN+ DAL A +AAL +T +P
Sbjct: 122 -----------------VSYLEKKSWLLNLDVIVLSDDGNVCDALFMAARAALWDTKVPR 164
Query: 120 --SVHVAAEAASDE---QPEVDISDEEFLQFDTSGVPVIT 154
SV A+ A + ++++ +E FDT +T
Sbjct: 165 TRSVEYQAKKAGNNAEGNRDIEMDEEGKSGFDTRITKKVT 204
>gi|73669985|ref|YP_306000.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina barkeri
str. Fusaro]
gi|72397147|gb|AAZ71420.1| ribosomal RNA-processing protein RRP42 [Methanosarcina barkeri str.
Fusaro]
Length = 260
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK + G P D+G + ++ +P A P FE E + E++ +
Sbjct: 52 LGDTQVLVGVKLQPGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRG 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA ID+ L + G+ W YID V++ DGN++DA A AAL T +P+
Sbjct: 112 IR--ESGA---IDIKKLCISVGESVWIAYIDVHVLNDDGNIIDASSLAAIAALMTTIVPN 166
>gi|242088449|ref|XP_002440057.1| hypothetical protein SORBIDRAFT_09g025235 [Sorghum bicolor]
gi|241945342|gb|EES18487.1| hypothetical protein SORBIDRAFT_09g025235 [Sorghum bicolor]
Length = 183
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/26 (88%), Positives = 24/26 (92%)
Query: 69 GAGIDLSSLVVVEGKVCWDLYIDGLV 94
GA IDLSSL+VVEGKVCWDLYID LV
Sbjct: 158 GAAIDLSSLIVVEGKVCWDLYIDRLV 183
>gi|307111676|gb|EFN59910.1| hypothetical protein CHLNCDRAFT_132943 [Chlorella variabilis]
Length = 301
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 13/107 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST +A +K E+ SA P++G++A+ V+ CS P L+ +LSS
Sbjct: 46 VGSTAALAGIKCEVMPASADTPEEGRLALQVELAPLCSADTRPGRPSEAAAVLTEQLSSL 105
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
L+ GAG +D L + GK W +Y+D V+ +DG+L D
Sbjct: 106 LE--------GAGV-VDRRQLCIDPGKAAWAVYVDVYVLDADGSLHD 143
>gi|312372348|gb|EFR20329.1| hypothetical protein AND_20269 [Anopheles darlingi]
Length = 243
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KAEL P A++P++G + V+ SP + P++ E + S +L
Sbjct: 86 IGNTTVVCGIKAELAAPKAVEPNQGYLIPNVEISPVSSPSYRPGPPSEEAQVYSQSLADV 145
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYID 91
+ IDL+ L V GK+ W LY D
Sbjct: 146 FSKARC-----IDLAQLCVEPGKLVWVLYCD 171
>gi|366996108|ref|XP_003677817.1| hypothetical protein NCAS_0H01580 [Naumovozyma castellii CBS 4309]
gi|342303687|emb|CCC71468.1| hypothetical protein NCAS_0H01580 [Naumovozyma castellii CBS 4309]
Length = 303
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V + ++ +P +P +G I + SP A P FE G +E + ++
Sbjct: 51 MGDTRVHCRISCQISQPYEDRPFEGLFLISTENSPMAGPQFENGNNTDEDEILCARIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D ++ DG +DA A+ A L + P
Sbjct: 111 AV--RRSGA---LDIEGLCIVAGSKCWAVRADVHFLNCDGGFIDASCIAVMAGLIHFKKP 165
Query: 120 SVHVAAE 126
+ V E
Sbjct: 166 DITVHGE 172
>gi|59006476|emb|CAI46226.1| hypothetical protein [Homo sapiens]
Length = 248
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 72 IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDE 131
I L + GK+ W LY D + + DGN+LDA A+ AAL N +P V + E A
Sbjct: 91 IQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETA--- 147
Query: 132 QPEVDISDEEFLQFDTSGVPVITTL 156
EV++ + +L T PV T+
Sbjct: 148 LAEVNLKKKSYLNIRTH--PVATSF 170
>gi|121698408|ref|XP_001267812.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
gi|119395954|gb|EAW06386.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
Length = 292
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 20/169 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T +I + +E+ +P +P G AI ++ + P ++ GR G+ L A ++ L
Sbjct: 51 LGKTSLIVRISSEVTKPRDDRPFDGLFAIALELTAMGSPAWDNGRQGD-LEAYVAHVLDR 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + +D SL +++G CW + D + DGNL+DA + A L + P
Sbjct: 110 VVRHSNA-----LDTESLCILKGVSCWSIRADIHITDYDGNLIDAACIGVMAGLQHFRRP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V D Q V DE VPV +T P + H
Sbjct: 165 DAVV-----KDGQVIVYGLDER--------VPVPLNITHKPLSVTFHTF 200
>gi|357627282|gb|EHJ77019.1| hypothetical protein KGM_00061 [Danaus plexippus]
Length = 839
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G+T V+ +K EL +P A +PD G + V+ P F + + +S+ + +
Sbjct: 80 GNTTVVCGIKLELAKPKAEEPDVGFLITNVELLPLCSSKFRPGPPSDHAQVVSNVVSDIV 139
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
K ID+ L +V K+ W LY D + + DG+++DA + ++L +
Sbjct: 140 TNSKC-----IDMKDLCIVPDKLSWVLYCDMVCLDYDGSVVDACLITLMSSLKS 188
>gi|351710102|gb|EHB13021.1| Exosome complex exonuclease RRP45 [Heterocephalus glaber]
Length = 364
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVAPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K D SL V G+ W + +D +++ DGN+ DA A + P
Sbjct: 110 LRNLKC-----TDTESLCAVAGEKVWQIRVDIHLLNHDGNITDAASIDAIVASCHFRRPD 164
Query: 121 VHVAAE 126
V V E
Sbjct: 165 VSVQGE 170
>gi|401406019|ref|XP_003882459.1| putative exosome complex exonuclease [Neospora caninum Liverpool]
gi|325116874|emb|CBZ52427.1| putative exosome complex exonuclease [Neospora caninum Liverpool]
Length = 294
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 12/117 (10%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPT------AEPTFEGRGGEELSAELSSALQH 59
V+ V +L RP+ PD+G+V + VDCS F+ G E S+ S++LQ
Sbjct: 71 VLCGVSMQLARPTN-APDEGEVFVTVDCSAALGVDGARGAAFDSVGIGEGSS--STSLQA 127
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L+G + +D L +V GK+ W +++D +V+ + G LLDA+ ++ AAL T
Sbjct: 128 -LVGDM--VLSSVDKKKLCLVPGKLMWKVFVDCMVLKAGGCLLDAVSLSVHAALRTT 181
>gi|281207355|gb|EFA81538.1| Putative exosome complex exonuclease [Polysphondylium pallidum
PN500]
Length = 470
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V +V E+ P +P++G D SP + + + G + AEL ++
Sbjct: 49 LGRTRVYTTVTCEVTEPKPERPNEGFFIFNTDVSPMSSVSVDSSRGNPVEAELGRLIERG 108
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + ID +L +V G W + + V+ GNLLD ++ AL + P
Sbjct: 109 LKESR-----AIDTEALCIVAGSKVWKVKTNVHVLDDCGNLLDCASISVITALLHFRKPD 163
Query: 121 VHVAAEAAS----DEQPEVDIS 138
V V A+ DE+ V +S
Sbjct: 164 VTVVGNDATIHPIDEREPVPLS 185
>gi|219129572|ref|XP_002184959.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403454|gb|EEC43406.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 269
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 25/166 (15%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
T V + AEL P+ +P++G VA+ VD SP+A F + +L+ LL
Sbjct: 35 TRVSCTCTAELLPPNPDRPNEGMVALSVDLSPSASTAFRQAAPVTTGGSILRSLERVLL- 93
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
G +D +L V W L + V+ GNL+DA A AAL + P V +
Sbjct: 94 ----TGGALDTEALCVTPQYWVWKLSLAVTVLDDGGNLMDASVLAALAALRHYRKPHVEL 149
Query: 124 AAEAASDEQPEVDISDEEFLQFDTSGVP--VITTLTKVPFPLIVHN 167
AAE ++ SGVP I + K P PL +H+
Sbjct: 150 AAEGSN------------------SGVPPRWIQSDLKEPVPLPLHH 177
>gi|290990431|ref|XP_002677840.1| 3' exoribonuclease domain-containing protein [Naegleria gruberi]
gi|284091449|gb|EFC45096.1| 3' exoribonuclease domain-containing protein [Naegleria gruberi]
Length = 367
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 13/141 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPT-AEP--TFEGRGGEELSAELSSAL 57
+G+T + V + P +P++G + +D S + P T + EL E+ +
Sbjct: 93 LGNTIALGIVSCSIMEPYMDRPNEGFLTFQIDFSTVGSRPIGTKQTSQQRELCIEIGRVI 152
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
L G +S ID +L ++ G+ W L +D ++ DGN+ D A AAL +
Sbjct: 153 DRSLRGSRS-----IDTEALCIIAGRKVWSLRVDVHILQDDGNVFDCCHLAAVAALLHFK 207
Query: 118 IPSV-----HVAAEAASDEQP 133
P V V D QP
Sbjct: 208 RPEVTIEGDRVVVHTVQDRQP 228
>gi|406868202|gb|EKD21239.1| exosome complex exonuclease [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 305
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 4/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T + + A + P P G I + SP P+ E ++ L S L
Sbjct: 51 LGKTRIHTHISATITPPLPTHPTDGLFTITTELSPMLSPSIESSSRPSVNETLLSRL--- 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + +D SL ++ G W + D V+S DGNL+DA + AAL + P
Sbjct: 108 -LEKTIRRSSALDTESLCLIAGSKVWHIRADVHVLSHDGNLVDAACLGVIAALQHFRKPD 166
Query: 121 VHVAAE 126
V E
Sbjct: 167 VETKGE 172
>gi|392572304|gb|EIW65456.1| hypothetical protein TREMEDRAFT_70580 [Tremella mesenterica DSM
1558]
Length = 281
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 13/138 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEE---LSAELSSA 56
+G T V+A V A + +P +P +G + I + SP A +E GR E+ ++ L +
Sbjct: 51 LGKTAVLAQVTATIVKPRDDRPYEGSLLINSEISPMASTAYENGRSSEDELIITRMLEKS 110
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ +D +L ++ G W L + +S GNLLD A AAL +
Sbjct: 111 IRR---------TEAVDREALCIIAGDKVWQLRLTLHFLSDSGNLLDCASLASMAALRHF 161
Query: 117 GIPSVHVAAEAASDEQPE 134
P + V + PE
Sbjct: 162 RKPEIEVIGDEVIIHSPE 179
>gi|407461958|ref|YP_006773275.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045580|gb|AFS80333.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosopumilus koreensis AR1]
Length = 272
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T+V+ VK + RP DKG + P + PT E G G E+ EL+ +
Sbjct: 54 LGDTEVVCGVKIQPDRPFPDTGDKGLFICTAELLPLSHPTVETGPPGPEV-IELARVVDR 112
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +D+S LV+ + K ++ D +V+ DGNL DA A AAL ++ P
Sbjct: 113 GIRESHM-----VDVSQLVIEKDKSVIGVFADNVVVDYDGNLFDACSYATTAALLSSKSP 167
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
+ +A + + + E Q + +PV T+ K+ +IV
Sbjct: 168 KWNWVNDAPA-------LVEGEDTQVPITTIPVSVTMAKIGKHIIV 206
>gi|449463354|ref|XP_004149399.1| PREDICTED: exosome complex component RRP43-like [Cucumis sativus]
gi|449503802|ref|XP_004162184.1| PREDICTED: exosome complex component RRP43-like [Cucumis sativus]
Length = 304
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST ++A++K E+ PS PD+G +A+ CSP P +S +LS
Sbjct: 68 IGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDT 127
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGN 100
+ S +G IDL L +V+GK W Y+D + +DG+
Sbjct: 128 I--------SSSGM-IDLRELSLVKGKAAWMAYLDIYCLDADGS 162
>gi|409041875|gb|EKM51360.1| hypothetical protein PHACADRAFT_129278 [Phanerochaete carnosa
HHB-10118-sp]
Length = 283
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V+A V ++ +P+ +P +G + I + SP A +E GR +E ++ L
Sbjct: 51 MGKTRVLAQVDGKMVKPTPERPLEGIITINSEISPMASSEYEPGRPSDE-EVTMTRMLDK 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +S A +D SL V G+ W L + ++ GNLLD A AL + P
Sbjct: 110 VL--RRSDA---VDKESLCVQAGQRVWHLRLTIHCLADAGNLLDCACLAGIVALKHYRRP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPF 161
V V + DE + + PV +L P+
Sbjct: 165 EVEV-------------VGDEVTIHHPSERAPVSLSLHHTPY 193
>gi|168006598|ref|XP_001755996.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692926|gb|EDQ79281.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 319
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 13/127 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T ++A VK E+ PS P++G+VA+ CSP P +S +LS+A
Sbjct: 70 IGNTTMLAGVKLEVITPSTASPNQGQVAVDFQMPSICSPLVRPGRPAEAAWVVSEQLSNA 129
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L + ++L L +V GK W Y+D + +DG+LLDA A AAL++
Sbjct: 130 LV---------SSNFVNLQQLCIVPGKAAWIAYVDVYCLDADGSLLDAALLAAVAALTHL 180
Query: 117 GIPSVHV 123
+P+V V
Sbjct: 181 QLPAVKV 187
>gi|393245799|gb|EJD53309.1| hypothetical protein AURDEDRAFT_110988 [Auricularia delicata
TFB-10046 SS5]
Length = 287
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEE---LSAELSSA 56
+G T V+ VKAE+ P +PD+G + +D + P F+ G EE LS L
Sbjct: 66 LGDTTVVCGVKAEIAEPELDKPDEGFLVPNLDLPAISSPKFKPGAPSEEAQVLSNRLYDL 125
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGN 100
L C + + LSSL + GK W +++D + I+ DGN
Sbjct: 126 LTSCDV---------LPLSSLCIEPGKAVWTIFLDIICINYDGN 160
>gi|444315341|ref|XP_004178328.1| hypothetical protein TBLA_0A10310 [Tetrapisispora blattae CBS 6284]
gi|387511367|emb|CCH58809.1| hypothetical protein TBLA_0A10310 [Tetrapisispora blattae CBS 6284]
Length = 305
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 10/140 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
M T V + L +P +P +G I + SP A FE G + S L+
Sbjct: 51 MDKTKVHCRISCSLTQPYEDRPFEGLFVISTEISPIAGAQFENGNNTGDYEVLCSRILEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ AAL + P
Sbjct: 111 SI--RRSGA---LDVEGLCIVAGSKCWTIRADVHFLDCDGGFIDASCIAVMAALLHFKKP 165
Query: 120 SVHVAAEAA----SDEQPEV 135
+ V E DE+P V
Sbjct: 166 DISVHGEQVIILPVDERPPV 185
>gi|156363855|ref|XP_001626255.1| predicted protein [Nematostella vectensis]
gi|156213125|gb|EDO34155.1| predicted protein [Nematostella vectensis]
Length = 225
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 11 KAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGA 70
K E P+A P+KG + VD P P+F E + LS+ + + L+ +S
Sbjct: 16 KKEFAEPAADVPNKGFIVPNVDLPPLCSPSFRPGPPSEHAQVLSTFIDN-LITKRS---- 70
Query: 71 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
L+ + W LYID + + DGN+ DA A+ AAL NT + +V +
Sbjct: 71 ----MELLQHAKYLVWVLYIDLMCLDYDGNVADAAVIAMLAALQNTRLHTVTI 119
>gi|336369000|gb|EGN97342.1| hypothetical protein SERLA73DRAFT_169702 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381784|gb|EGO22935.1| hypothetical protein SERLADRAFT_450637 [Serpula lacrymans var.
lacrymans S7.9]
Length = 282
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 65/162 (40%), Gaps = 20/162 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T VIA V ++ +P +P +G + I + SP A +E GR EE +
Sbjct: 50 MGDTRVIAQVDGKMVKPLPERPFEGMITIHSEISPMASSEYEPGRPSEE------EVIIT 103
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+L +D SL V+ G+ W L + ++ GN+LD A AL + P
Sbjct: 104 RMLDKVIRRSDAVDKESLCVLAGQRVWHLRLTIHCLADAGNMLDCACLAGIVALKHFRRP 163
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPF 161
V V I DE + T P+ + P+
Sbjct: 164 EVEV-------------IGDEVTIHAPTERAPIPLAIHHTPY 192
>gi|119480721|ref|XP_001260389.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
gi|119408543|gb|EAW18492.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
Length = 292
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 20/169 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T +I + +E+ +P +P G I ++ + P ++ GR G+ L A ++ L
Sbjct: 51 LGKTSLIVRISSEVTKPRDDRPFDGIFTIALELTAMGSPAWDNGRQGD-LEAYVAHVLDR 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + +D SL +++G CW + D V DGNL+DA + A L + P
Sbjct: 110 LVRHSNA-----LDTESLCILKGVSCWSIRADVHVTDYDGNLIDAACIGVMAGLQHFRRP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V D Q V DE VPV +T P + H
Sbjct: 165 DAVV-----KDGQVVVYGLDER--------VPVPLNITHKPLSVTFHTF 200
>gi|358056344|dbj|GAA97711.1| hypothetical protein E5Q_04390 [Mixia osmundae IAM 14324]
Length = 287
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+A V AE+ RP +P +G + I + +P A +E E ++ L+
Sbjct: 50 MGKTRVMAQVSAEVVRPPPERPYEGFLVISTEVTPLASAAYEMNRQTEEEILVARTLEKA 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNL 101
+ ++ +D SL +V G W + +D ++ DGNL
Sbjct: 110 IRRTEA-----VDRESLCIVAGDKVWSIRVDVHFLNDDGNL 145
>gi|402219272|gb|EJT99346.1| ribosomal protein S5 domain 2-like protein [Dacryopinax sp. DJM-731
SS1]
Length = 329
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 1 MGSTDVIASVKAELGR-------PSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAEL 53
+G TDV+ +VK + R Q K + V+CSP+A P +LS++L
Sbjct: 52 VGDTDVLVAVKLDAVRLDDVVDGDDERQEGKAQFVCSVECSPSALPHLPTDTLPDLSSDL 111
Query: 54 SSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
++ L + + + L L++V + W L +D L++S GN+ D L AA++AAL
Sbjct: 112 TTLLSY-----YLSLPSLLPLRQLLIVPRRRAWQLSVDALLLSYGGNVTDVLFAAVRAAL 166
Query: 114 SNTGIPSVH 122
+ +P
Sbjct: 167 WDLRVPKTR 175
>gi|255513310|gb|EET89576.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 258
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A VK PD+G + + + P A +E + EL +
Sbjct: 51 LGATKVLAGVKLVQEDVYEDTPDQGNLVVSAELLPLAAAEYETGPPSPEAIELGRVVDRA 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ AG IDL SL++ EGK W +Y+D V++ DGNL DA A +A+ + +P
Sbjct: 111 IR-----AGNCIDLKSLLLEEGK-AWTVYVDVYVLNFDGNLFDASVIAAMSAILDARVP 163
>gi|406604497|emb|CCH44059.1| hypothetical protein BN7_3618 [Wickerhamomyces ciferrii]
Length = 304
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEE---LSAELSSA 56
+G T V+A + AE+ P + +G + + SP A FE GR ++ ++ + A
Sbjct: 51 LGKTRVVARISAEIVTPYEDRAFEGLFQVSTEISPMASAMFENGRQSDDELLITRTVEKA 110
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ +SGA +DL SL ++ G CW + D + DG +DA A+ A L +
Sbjct: 111 VR------RSGA---LDLESLCIIAGSKCWSIRADVHFLDCDGGFIDASCIAVMAGLQHF 161
Query: 117 GIPSVHVAAE 126
+ V+ E
Sbjct: 162 RKNDITVSGE 171
>gi|164661509|ref|XP_001731877.1| hypothetical protein MGL_1145 [Malassezia globosa CBS 7966]
gi|159105778|gb|EDP44663.1| hypothetical protein MGL_1145 [Malassezia globosa CBS 7966]
Length = 291
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 23/172 (13%)
Query: 1 MGSTDVIASVKAELGRPSA----------------MQPDKGKVAIFVDCSPTAEPTFEGR 44
+GST+V+ VK E+ A P K + + VD +P+
Sbjct: 13 LGSTEVMCGVKLEMDSQEAPTVTVSQGERKIDFTPWLPSKPCIQVQVDYTPSLLREHNAS 72
Query: 45 GGEELSAELSSALQHCLLGGKSGAGAG-IDLSSLVVVEGKVCWDLYIDGLVIS-SDGNLL 102
L++ + LQ C SG G + VVV W L++D V+S S GN+L
Sbjct: 73 ELSMLTSTMQDMLQACY--AFSGDSYGPLPARQFVVVPYAKYWVLHVDVYVMSWSGGNVL 130
Query: 103 DALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154
D + AA+ AL NT IP V A ++ Q E D +E+ D +G+ IT
Sbjct: 131 DTVFAAVFCALWNTRIPETRVMAMDRTN-QGEQDAMNED--HDDPAGIKFIT 179
>gi|195128659|ref|XP_002008779.1| GI11625 [Drosophila mojavensis]
gi|193920388|gb|EDW19255.1| GI11625 [Drosophila mojavensis]
Length = 417
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+A V ++G PS+ + ++G + + VD A ++ L+S L+
Sbjct: 56 MGDTKVLAQVSCDIGTPSSARANEGTLYLNVDIKGVAFLDEIQSTHDQRFLTLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL SL + + W + +D V++ DGNL DA A AAL + P
Sbjct: 116 FRSSRC-----LDLESLCIAVEQHVWCVRVDINVLNHDGNLYDASTIAALAALMHFRRPE 170
Query: 121 VHVAAE 126
V A E
Sbjct: 171 VSYAEE 176
>gi|387192361|gb|AFJ68652.1| exosome complex component RRP45 [Nannochloropsis gaditana CCMP526]
gi|422294192|gb|EKU21492.1| exosome complex component RRP45 [Nannochloropsis gaditana CCMP526]
Length = 620
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 6/141 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V +EL P +P +G + + V+ SP A + E+ ++ C
Sbjct: 57 LGKTRVLTVVTSELTPPYPDRPAEGFLNLNVEYSPMATLGIDNARTNPTLVEVDRVIERC 116
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ +D +L V+ G W L D ++ GN++DA A AAL + +P
Sbjct: 117 LRQSRA-----LDTEALCVIAGSKVWSLRCDVRILDDAGNVVDAACLATVAALMHFRLPE 171
Query: 121 VHVAAEAASDEQPEVDISDEE 141
V V SDE+ +D E
Sbjct: 172 VTVLT-GGSDERSNSSANDGE 191
>gi|391334104|ref|XP_003741448.1| PREDICTED: exosome complex component RRP45-like [Metaseiulus
occidentalis]
Length = 294
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A A + P +P++G++AI D SP A + R + E +
Sbjct: 52 LGDTKVLAQCSAHICEPKPTRPNEGRLAIQFDVSPVAASLQDSR-----TMEYRVGIGR- 105
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LL +DL +L +V G+ W++ +D ++++ GN+ + A AAL++ P
Sbjct: 106 LLDRVIRDSECVDLENLCLVAGERAWEVRVDVVLMNLGGNVAECASIASVAALAHFKRPE 165
Query: 121 VHV 123
V +
Sbjct: 166 VTI 168
>gi|326428882|gb|EGD74452.1| hypothetical protein PTSG_05816 [Salpingoeca sp. ATCC 50818]
Length = 280
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAE--LSSALQ 58
+G+T I V + RP +P KG V V SP A P ++ GG +A L+ L+
Sbjct: 57 IGNTQAICRVSCSIVRPHEDRPTKGFVRYGVTLSPMASPDYDA-GGRPSAASIYLTRLLE 115
Query: 59 HCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGI 118
H ++ +D SL +V G+ W + ++ V + DGN+ DA A A L +
Sbjct: 116 HIFREARA-----LDDESLCIVAGEKVWAVSVNVTVTNDDGNMEDACALAALAGLMHFRR 170
Query: 119 PSVHVAAE 126
P V +A +
Sbjct: 171 PYVSIAGQ 178
>gi|67539882|ref|XP_663715.1| hypothetical protein AN6111.2 [Aspergillus nidulans FGSC A4]
gi|40738896|gb|EAA58086.1| hypothetical protein AN6111.2 [Aspergillus nidulans FGSC A4]
gi|259479699|tpe|CBF70162.1| TPA: exosome complex endonuclease 2/ribosomal RNA processing
protein, putative (AFU_orthologue; AFUA_2G08860)
[Aspergillus nidulans FGSC A4]
Length = 295
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T ++ + AE+ +P +P G I ++ + P +E GR G+ L +++ L
Sbjct: 51 LGKTSLVVRISAEVAKPHDDRPFDGIFNIAMELTAMGSPAWENGRQGD-LETYVTNVLDR 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + +D SL +++G CW + D + DGNL+DA + A L + P
Sbjct: 110 VIRHSNA-----LDTESLCILKGVSCWTIRADVHITDYDGNLIDASCIGVMAGLQHFRRP 164
>gi|327291753|ref|XP_003230585.1| PREDICTED: exosome complex exonuclease RRP42-like, partial [Anolis
carolinensis]
Length = 150
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 99 GNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTL 156
GNL DA+ A+KAAL NT IP V V + E+++SD+ + ++ + VP I TL
Sbjct: 6 GNLFDAISIAVKAALFNTRIPKVRVLDDEGG---REIELSDDPYDCIRLNVDNVPCIVTL 62
Query: 157 TKVPFPLIV 165
+K+ + +V
Sbjct: 63 SKIGYRHVV 71
>gi|170084377|ref|XP_001873412.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650964|gb|EDR15204.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 284
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 33/171 (19%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGG---EELSAELSSA 56
+G T V+A V+A++ +P+ +P +G + I + SP A +E GRG EE++ ++
Sbjct: 50 LGKTRVLAQVEAKMVKPAPERPFEGTITIHSEISPMASSEYEPGRGRPSDEEVA--ITRM 107
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L L +S A +D SL ++ G+ W + + ++ GN+LD A AL +
Sbjct: 108 LDKVL--KRSDA---VDKESLCILAGQRVWHIRLTLHFLADAGNMLDCACLAGITALRHF 162
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHN 167
P V V + DE V V + L + P PL +H+
Sbjct: 163 RRPDVEV-------------VGDE---------VIVHSPLDRAPVPLAIHH 191
>gi|367002015|ref|XP_003685742.1| hypothetical protein TPHA_0E02160 [Tetrapisispora phaffii CBS 4417]
gi|357524041|emb|CCE63308.1| hypothetical protein TPHA_0E02160 [Tetrapisispora phaffii CBS 4417]
Length = 303
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEG---RGGEEL--SAELSS 55
+G T V V + +P +P +G I + SP A P FE G +E+ S +
Sbjct: 51 LGKTKVQCRVSCSITQPYEDRPFEGLFIISTEMSPMAGPQFENGSNTGDDEVLCSRIIEK 110
Query: 56 ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
A++ +SGA +D+ L +V G CW + D V+ DG ++DA A+ AL +
Sbjct: 111 AIR------RSGA---LDVEGLCIVAGSKCWAIRADVHVLDCDGGIIDASCLAVICALLH 161
Query: 116 TGIPSVHVAAEAAS 129
P V + E +
Sbjct: 162 FRKPDVSILGEQVT 175
>gi|255718091|ref|XP_002555326.1| KLTH0G06644p [Lachancea thermotolerans]
gi|238936710|emb|CAR24889.1| KLTH0G06644p [Lachancea thermotolerans CBS 6340]
Length = 305
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V + + +P +P +G I + SP A P FE G E S ++
Sbjct: 51 MGKTKVHCRISCTITQPYEDRPFEGLFFISTETSPMAGPQFENGNNTGEDEVLCSRIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D ++ DG +DA A+ L + P
Sbjct: 111 AV--RRSGA---LDVEGLCIVAGSKCWAVRADVHFLNCDGGFIDASCIAVMVGLLHFKKP 165
Query: 120 SVHVAAEAAS 129
V V+ E +
Sbjct: 166 DVSVSGEQVT 175
>gi|225712550|gb|ACO12121.1| Exosome complex exonuclease RRP45 [Lepeophtheirus salmonis]
Length = 210
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 18/166 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+AS +G P + +P++G + I EP + E EL+ ++
Sbjct: 47 LGETRVLASTSCSVGEPQSSRPNEGVLKI------RMEPLAKRSMTTEALVELNRVIERV 100
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K +D+ SL + G+ W + ++ +++ GN D A AAL + P
Sbjct: 101 LKQSKC-----LDMESLCISSGEKVWIISLEMTILNDAGNAADCASVAGLAALCHFKRPD 155
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVH 166
V + A V I T+G+ + T + F L++H
Sbjct: 156 VTLKANTTPKVIKSVYI-------LSTNGIRFLLRFTIIQFYLLLH 194
>gi|258574161|ref|XP_002541262.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901528|gb|EEP75929.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 282
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 19/163 (11%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGK 65
VI + AE+ P + G + ++ + A P FE + +LS L + +
Sbjct: 46 VIVRISAEVTAPRPERESDGIFTVSIELNDMAIPGFETGRQSDSETQLSRTLDKIV--RR 103
Query: 66 SGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAA 125
S A +D SL + +G CW++ D ++ +DG L+D AI AAL + +P V
Sbjct: 104 SNA---LDTESLCIAKGLSCWNVRADVHIVDADGGLVDICCLAIMAALLHFRLPESTV-- 158
Query: 126 EAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
D + V ++E+ VPV LTKVP + NL
Sbjct: 159 ---RDGKVTVYSAEEK--------VPVPLNLTKVPLS-VTFNL 189
>gi|161527941|ref|YP_001581767.1| exosome complex RNA-binding protein Rrp42 [Nitrosopumilus maritimus
SCM1]
gi|160339242|gb|ABX12329.1| 3' exoribonuclease [Nitrosopumilus maritimus SCM1]
Length = 272
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T+V+ VK + RP DKG + P + PT E G G E+ EL+ +
Sbjct: 54 LGDTEVVCGVKIQPDRPFPDTGDKGLFICTAELLPLSHPTVETGPPGPEV-IELARVVDR 112
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ ID+S LV+ + K ++ D +V+ DGNL DA A AAL ++ P
Sbjct: 113 GIRESHM-----IDVSQLVIEKDKSVIGVFADNVVVDYDGNLFDACSYAATAALLSSKSP 167
Query: 120 SVHVAAEA-ASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
+ +A A E EVD+ + +PV T+ K+ +IV
Sbjct: 168 KWNWVDDAPALVEGEEVDVP--------ITTIPVSVTMGKIGNHIIV 206
>gi|367014585|ref|XP_003681792.1| hypothetical protein TDEL_0E03380 [Torulaspora delbrueckii]
gi|359749453|emb|CCE92581.1| hypothetical protein TDEL_0E03380 [Torulaspora delbrueckii]
Length = 305
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V + ++ +P +P +G I + SP A P FE G E + ++
Sbjct: 51 MGNTKVQCRISCQIAQPYEDRPFEGLFLISTESSPMAGPQFENGNNTGEDEVLCARIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ AL + P
Sbjct: 111 AV--RRSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCVAVMTALLHFKKP 165
Query: 120 SVHV 123
+ V
Sbjct: 166 DISV 169
>gi|407464320|ref|YP_006775202.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosopumilus sp. AR2]
gi|407047508|gb|AFS82260.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosopumilus sp. AR2]
Length = 272
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 12/165 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T+VI VK + RP DKG + P + PT E + EL+ +
Sbjct: 54 LGDTEVICGVKIQPDRPFPDTGDKGLFICTAELLPLSHPTVETGPPQPPVIELARVVDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +D+S LV+ + K ++ D +V+ DGNL DA A AAL T P
Sbjct: 114 IRESHM-----VDVSQLVIEKDKSVIGVFADNVVVDYDGNLFDACSYAATAALLTTKTPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
+ +D+ P + ++ L T +PV T+ K+ ++V
Sbjct: 169 WN-----WTDDSPVLAEGEDRPLPITT--IPVSVTMGKIGNYIVV 206
>gi|254586253|ref|XP_002498694.1| ZYRO0G16412p [Zygosaccharomyces rouxii]
gi|238941588|emb|CAR29761.1| ZYRO0G16412p [Zygosaccharomyces rouxii]
Length = 306
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T + + ++ +P +P +G I + SP A P FE G E ++
Sbjct: 51 MGKTKIHCRISCQIAQPYEDRPFEGLFLISTETSPMAGPQFENGNSTGEDEVLCVRIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG LLDA A+ AL + P
Sbjct: 111 AV--RRSGA---LDVEGLCIVAGSKCWAIRADVHFLDCDGGLLDASCIAVMTALLHFKKP 165
Query: 120 SVHV 123
+ V
Sbjct: 166 DITV 169
>gi|294873385|ref|XP_002766601.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
gi|239867633|gb|EEQ99318.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
Length = 418
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRG------GEELSAE-- 52
+G T + A V +L P + +P +G+++I V+ P A P G G + E
Sbjct: 31 IGKTRIRAVVTGQLTSPPSNRPREGRLSINVEAGPMAAPAVLPSGNSSGLVGSAQTPEGI 90
Query: 53 -LSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKA 111
L + L+ L G + +D+ +L + G + W+L +D V+S +GN+ DA A
Sbjct: 91 SLCNQLERMLKGSNA-----VDVEALCIQSGSLVWELRLDVHVLSDNGNVGDAAAIASTV 145
Query: 112 ALSN 115
AL +
Sbjct: 146 ALRH 149
>gi|363752717|ref|XP_003646575.1| hypothetical protein Ecym_4741 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890210|gb|AET39758.1| hypothetical protein Ecym_4741 [Eremothecium cymbalariae
DBVPG#7215]
Length = 305
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V AE+ +P +P +G I + SP A FE G E +S ++
Sbjct: 51 LGETKVHCRTTAEISQPYDNRPFEGLFLISTEMSPMAGTQFEHGNNTGEDEVLISRIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +DL L + G CW + D + DG +DA A+ A+L + P
Sbjct: 111 SV--RRSGA---LDLEGLCISAGSKCWSIRADVHFLDCDGGFIDASCIAVMASLLHFRKP 165
Query: 120 SVHVAAEAAS 129
V V E +
Sbjct: 166 DVTVFGERVT 175
>gi|145246552|ref|XP_001395525.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Aspergillus niger CBS 513.88]
gi|134080243|emb|CAK97146.1| unnamed protein product [Aspergillus niger]
Length = 292
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 24/171 (14%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T +I + AE+ +P +P G I ++ + P ++ GR G+ +++ L
Sbjct: 51 LGKTSLIVRISAEVTKPHDDRPFDGLFTIAMELTAMGSPAWDNGRQGD-FETYVTNVLDR 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + +D SL +++G CW + D V DGNL+DA I A L
Sbjct: 110 VVRHSNA-----LDTESLCILKGVSCWSIRADVHVTDYDGNLIDAACIGIMAGLQ----- 159
Query: 120 SVHVAAEAA--SDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
H + A D Q V DE VPV +T P + H
Sbjct: 160 --HFRRQDAVVKDGQVIVYRLDER--------VPVALNITHKPLSVTFHTF 200
>gi|448085760|ref|XP_004195940.1| Piso0_005372 [Millerozyma farinosa CBS 7064]
gi|359377362|emb|CCE85745.1| Piso0_005372 [Millerozyma farinosa CBS 7064]
Length = 305
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHC 60
G T + V AE+ +P +P +G I + SP A P FE GR ++ L
Sbjct: 53 GKTKLTVRVSAEVVKPFEDRPFEGIFTINTEISPMASPQFEQGRVSDD------EILMSR 106
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ +DL +L +V G W + D V+ DG ++DA + AL + P
Sbjct: 107 LIEKAIRRSNALDLEALCMVAGAKVWYIRADVNVLEFDGGIIDAASFGVMVALQHFRKPD 166
Query: 121 VHV 123
V +
Sbjct: 167 VSI 169
>gi|71001078|ref|XP_755220.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Aspergillus fumigatus Af293]
gi|66852858|gb|EAL93182.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Aspergillus fumigatus Af293]
gi|159129307|gb|EDP54421.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Aspergillus fumigatus A1163]
Length = 292
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 20/169 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T +I + +E+ +P +P G I ++ + P ++ GR G+ L A ++ L
Sbjct: 51 LGKTGLIVRISSEVTKPRDDRPFDGIFTIALELTAMGSPAWDNGRQGD-LEAYVAHVLDR 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + +D SL +++G CW + D V DGNL+DA + A L + P
Sbjct: 110 LVRHSNA-----LDTESLCILKGVSCWSIRADVHVTDYDGNLVDAACIGVMAGLQHFRRP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
V D Q V DE VPV +T P + H
Sbjct: 165 DAVV-----KDGQVIVYGLDER--------VPVPLNITHKPLSVTFHTF 200
>gi|156032965|ref|XP_001585319.1| hypothetical protein SS1G_13558 [Sclerotinia sclerotiorum 1980]
gi|154698961|gb|EDN98699.1| hypothetical protein SS1G_13558 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 209
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 37 AEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVIS 96
A P FE E LS L+ L A +D SL ++ G+ CW + D ++S
Sbjct: 2 ASPAFETNRPTEQEVLLSRLLEKTL-----RRSAALDTESLCLIAGQKCWSVRADVHILS 56
Query: 97 SDGNLLDALGAAIKAALSNTGIPSVHVAAEAAS 129
DGNL+DA AI AAL + P E +
Sbjct: 57 HDGNLIDASCIAIIAALQHFKKPDTSTEGETVT 89
>gi|357436289|ref|XP_003588420.1| Exosome complex exonuclease RRP43 [Medicago truncatula]
gi|355477468|gb|AES58671.1| Exosome complex exonuclease RRP43 [Medicago truncatula]
Length = 180
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST ++ ++K E+ PS PD+G +AI CSP P +S +LS
Sbjct: 69 IGSTTMLTAIKMEVMIPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEAEPVVSKQLSDT 128
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
+ + IDL L +V GK W Y+D + +DG+L D
Sbjct: 129 IT---------SSGMIDLRELSLVGGKAAWMAYLDIYCLDADGSLFD 166
>gi|407411255|gb|EKF33402.1| exosome-associated protein 2, putative,3' exoribonuclease, putative
[Trypanosoma cruzi marinkellei]
Length = 278
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 20/147 (13%)
Query: 10 VKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAG 69
V G P + P++G++ + V P F G ++ L + +S
Sbjct: 73 VTGMFGPPPSQHPEEGRLTVDV-----TAPFFPGYSAFQIEGTLHELARFV----RSTII 123
Query: 70 AGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAAS 129
+ +DL+ L V+ G+ CW L ++ +V+++DG L A A AAL N +P +
Sbjct: 124 SCLDLTKLCVISGEACWVLRVELIVMNADGGLRAATLHATVAALHNLTLPKARL------ 177
Query: 130 DEQPEVDISDEEFLQFDTSGVPVITTL 156
P D+ + L F +PV T+
Sbjct: 178 ---PSGDVVESRCLCFHR--IPVAATI 199
>gi|403413602|emb|CCM00302.1| predicted protein [Fibroporia radiculosa]
Length = 283
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V+A V A + +P +P +G + I + SP A +E GR +E ++ L
Sbjct: 51 MGKTRVMAQVDARMVKPPPERPLEGIITIHSELSPMASNEYEVGRPSDE-EVTITRMLDK 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +D SL V+ G+ W + + ++ GN+LD A AL + P
Sbjct: 110 VLRRSDV-----VDKESLCVLAGQRVWHIRLTIHCLADAGNMLDCACLAGIVALKHFRRP 164
Query: 120 SVHVAAEAASDEQP 133
V V + + P
Sbjct: 165 EVEVVGDEVTVHHP 178
>gi|346467463|gb|AEO33576.1| hypothetical protein [Amblyomma maculatum]
Length = 215
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+ VKAEL P+ P +G G GE+ A++ S L
Sbjct: 43 MGCTTVVCGVKAELAEPAVAMPKQGYXX--------------GPPGEQ--AQVLSKLMLD 86
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L +DL L + EGK+ W L +D + DGN+ +A A AAL + +P
Sbjct: 87 ILTSSDS----LDLEKLCIEEGKLVWSLNVDLTCLDYDGNVAEACILAATAALCSLTLPK 142
Query: 121 V 121
V
Sbjct: 143 V 143
>gi|71031797|ref|XP_765540.1| exosome complex exonuclease Rrp45 [Theileria parva strain Muguga]
gi|68352497|gb|EAN33257.1| exosome complex exonuclease rrp45, putative [Theileria parva]
Length = 276
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G+T V + E+ P++ +P++G + V+ SP ++E + L L++
Sbjct: 60 FGNTVVFTCISQEIVEPNSERPNEGFLFFNVETSPFTSESYEPGKTTDQEHNLIYFLENM 119
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL +L + GK W L + V+ DGNLL A + A+L + P
Sbjct: 120 F-----KESSCLDLETLCITSGKQVWALRVYVHVLQDDGNLLSACSLSALASLLHYRKPL 174
Query: 121 VHVAAE 126
+ ++ E
Sbjct: 175 MELSDE 180
>gi|398404486|ref|XP_003853709.1| hypothetical protein MYCGRDRAFT_108491 [Zymoseptoria tritici
IPO323]
gi|339473592|gb|EGP88685.1| hypothetical protein MYCGRDRAFT_108491 [Zymoseptoria tritici
IPO323]
Length = 292
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ ++ AE+ P + G I + SP A P FE ++ LS L+
Sbjct: 51 LGKTRVMVAISAEVIAPYTDRKFDGVFTISTELSPIASPAFEVGRQDQTEILLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL ++ G C+ + D V+ DGN++DA A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCIIAGSKCFHIRADIHVLDHDGNIIDAACVALVAALMHFRRPD 165
Query: 121 VHVAAEAAS 129
+ + E +
Sbjct: 166 IEIHGEEVT 174
>gi|58264608|ref|XP_569460.1| exosome complex exonuclease rrp45 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134109839|ref|XP_776469.1| hypothetical protein CNBC5230 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259145|gb|EAL21822.1| hypothetical protein CNBC5230 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57225692|gb|AAW42153.1| exosome complex exonuclease rrp45, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 281
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 7/135 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T ++A V A + +P +P +G + I + P A +E GR G++ +
Sbjct: 51 LGKTAILAQVSATIVKPRDDRPYEGFLLINSEIGPMASSVYENGRPGDD------EVMIG 104
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
LL ID +L ++ G+ W L + +S GNLLD A AAL + P
Sbjct: 105 RLLEKSIRRTEAIDREALCILAGEKVWQLRLTLHFLSDSGNLLDCAALAGMAALKHFRKP 164
Query: 120 SVHVAAEAASDEQPE 134
V V + PE
Sbjct: 165 DVEVIGDEVIIHSPE 179
>gi|84998310|ref|XP_953876.1| exosome ribonuclease PH (Rrp42 ) [Theileria annulata]
gi|65304873|emb|CAI73198.1| exosome ribonuclease PH (Rrp42 homologue), putative [Theileria
annulata]
Length = 268
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 14/165 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G V +V + P PD+G +D + T FE ELS L +
Sbjct: 43 FGDNIVQTTVNFSIVSPEDSTPDEG----IIDLTITGTNIFEN---SELSQRNYEILCN- 94
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L A +DL SL ++ G++CW++ I V+ G ++DAL + ++L + +P
Sbjct: 95 ILYDLEFQHAFLDLKSLCILPGQLCWNIRIHSTVVKRGGCVIDALSIGVLSSLMCSDVPD 154
Query: 121 VHVA------AEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
V V + S+ Q ++ + + + P+IT++ KV
Sbjct: 155 VEVMFRDELESYQRSNLQLKLSLDKNKIISQLVERFPLITSVGKV 199
>gi|389584933|dbj|GAB67664.1| exosome complex exonuclease, partial [Plasmodium cynomolgi strain
B]
Length = 280
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 21/163 (12%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
+VI +K L PS PD+G + + +DC + + ++ + + L CL
Sbjct: 49 NNVICGIKLSLLTPSLDAPDEGVINLQIDCPASVAANRIKKDHLQIMSSIIYDL--CL-- 104
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
ID L ++ K W + I +V+++ G LLD + AI AL +T +P V
Sbjct: 105 -----KNNIDRKKLCILPSKFVWGVDISVMVLNAGGGLLDIISMAIYVALKDTIVPV--V 157
Query: 124 AAEAASDEQP----------EVDISDEEFLQFDTSGVPVITTL 156
A+ DE EV+I + + F VP+ ++
Sbjct: 158 KAKRKIDESNTFHHTKCADYEVEIIENQKTNFPYENVPICVSI 200
>gi|321478855|gb|EFX89812.1| hypothetical protein DAPPUDRAFT_40604 [Daphnia pulex]
Length = 279
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T V+A V + P + + ++G + I V+ S A FE GR G++ E++ ++
Sbjct: 50 LGNTRVMAQVSCSVQVPKSSRANEGMLFINVEMSTMAAEHFEAGRLGQQ-GIEVNRLVER 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
C+ + IDL SL ++ + W++ +D +++ +GNL+D
Sbjct: 109 CIKDSRC-----IDLESLCILVEEQAWEVRVDIHILNHEGNLID 147
>gi|330797129|ref|XP_003286615.1| hypothetical protein DICPUDRAFT_31155 [Dictyostelium purpureum]
gi|325083440|gb|EGC36893.1| hypothetical protein DICPUDRAFT_31155 [Dictyostelium purpureum]
Length = 276
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 23/158 (14%)
Query: 1 MGSTDVIASVKAELG-RPSAMQPDKGKVA---------IFVDCS--PTAEPTFEGRGGEE 48
+G+T V+ V+AE+G +PS DK K+ IF++ P TF +
Sbjct: 52 IGNTSVVCGVRAEVGEKPST---DKSKLQSINNHENSNIFINIELGPICSNTFSSTKPSD 108
Query: 49 LSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAA 108
++ L S L + D EGK W LY+D + DGN+ DA +
Sbjct: 109 MAMTLCSRLNSLI-----NRLEIPDTDFYFDEEGKALWYLYVDIYCLDYDGNIYDAAVLS 163
Query: 109 IKAALSNTGIPS--VHVAAEAASD-EQPEVDISDEEFL 143
I +AL N +P + E D EQP +++ + +L
Sbjct: 164 ILSALKNVKLPKGIIENNDEYYKDLEQPLRELNIKHYL 201
>gi|440790324|gb|ELR11607.1| exosc8 protein [Acanthamoeba castellanii str. Neff]
Length = 278
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 35/174 (20%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V A VKAE G + P + V+ +P P F+ ELS +++ L
Sbjct: 54 IGNTSVSAGVKAECG----LAPPTTPGNVNVELTPLCSPNFKPGKPSELSQYIATILNRL 109
Query: 61 LLGGKSGAGAGIDL--SSLVVVEGK---------VCWDLYIDGLVISSDGNLLDALGAAI 109
+ DL S++ +E K + W LY+D + DGN+ DA A+
Sbjct: 110 V--------RTTDLVDESVLRIEDKEEQSKERKAMVWYLYVDMYCLDYDGNVFDACLIAL 161
Query: 110 KAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPL 163
+AL+N +P+ V ++ D+ F T + L P PL
Sbjct: 162 LSALANVRLPAARVVSK------------DDNFTVVTTGEANIGLRLRHFPIPL 203
>gi|405123132|gb|AFR97897.1| exosome complex exonuclease rrp45 [Cryptococcus neoformans var.
grubii H99]
Length = 282
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 28/168 (16%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T ++A V A + +P +P +G + I + P A +E GR G++ +
Sbjct: 51 LGKTAILAQVSAAIVKPRDDRPYEGFLLINSEIGPMASSVYENGRPGDD------EVMIG 104
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
LL ID +L ++ G+ W L + +S GNLLD A AAL + P
Sbjct: 105 RLLEKSIRRTEAIDREALCILAGEKVWQLRLTLHFLSDSGNLLDCAALAGMAALKHFRKP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHN 167
V V I DE +Q + P PL +H+
Sbjct: 165 DVEV-------------IGDEVIIQHSPD--------ERAPVPLAIHH 191
>gi|302682326|ref|XP_003030844.1| hypothetical protein SCHCODRAFT_16010 [Schizophyllum commune H4-8]
gi|300104536|gb|EFI95941.1| hypothetical protein SCHCODRAFT_16010 [Schizophyllum commune H4-8]
Length = 341
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G T+V A+ K E+ ++ V V CSP A P ++L A+L+S L L
Sbjct: 62 GGTEVWAATKLEV--VDVADGERQGVVCSVTCSPQAYPHLTAPALDDLQADLTSLLDTTL 119
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
A + +SL ++ K W L +D +V+++ G++ DAL A +AAL +T +P
Sbjct: 120 ------AHPSLLPASLTIIPAKKAWLLALDCVVLAAAGSVPDALFMAARAALWDTRVPRT 173
Query: 122 H 122
Sbjct: 174 R 174
>gi|294868324|ref|XP_002765481.1| exosome complex exonuclease rrp45, putative [Perkinsus marinus ATCC
50983]
gi|239865524|gb|EEQ98198.1| exosome complex exonuclease rrp45, putative [Perkinsus marinus ATCC
50983]
Length = 349
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTF------EGRGGEELSAE-- 52
+G T + A V +L P + +P +G+++I V+ P A P G G + E
Sbjct: 16 IGKTRIRAVVTGQLTSPPSNRPREGRLSINVEAGPMAAPAVLPSGNSSGLVGSAQTPEGI 75
Query: 53 -LSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKA 111
L + L+ L G + +D+ +L + G + W+L +D V+S +GN+ DA A
Sbjct: 76 SLCNQLERMLKGSNA-----VDVEALCIQSGSLVWELRLDVHVLSDNGNVGDAAAIASIV 130
Query: 112 ALSN 115
AL +
Sbjct: 131 ALRH 134
>gi|195020434|ref|XP_001985193.1| GH14641 [Drosophila grimshawi]
gi|193898675|gb|EDV97541.1| GH14641 [Drosophila grimshawi]
Length = 415
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+A V ++G PS+ + ++G + + VD A ++ L+S L+
Sbjct: 56 MGDTKVLAQVSCDIGTPSSARGNEGTLHLNVDIKGVAFLDEVQATHDQRQLTLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL SL + + W + +D V++ DGNL DA A AAL + P
Sbjct: 116 FRSSRC-----LDLESLCIATEQHVWCVRVDINVLNHDGNLYDASTIAALAALMHFRRPD 170
Query: 121 V 121
V
Sbjct: 171 V 171
>gi|350636872|gb|EHA25230.1| hypothetical protein ASPNIDRAFT_49678 [Aspergillus niger ATCC 1015]
Length = 292
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 24/171 (14%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T +I + AE+ +P +P G I ++ + P ++ GR G+ +++ L
Sbjct: 51 LGKTSLIVRISAEVTKPHDDRPFDGLFTIAMELTAMGSPAWDNGRQGD-FETYVTNVLDR 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + +D SL +++G CW + D V DGNL+DA I A L
Sbjct: 110 VVRHSNA-----LDTESLCILKGVSCWSIRADVHVTDYDGNLIDAACIGIMAGLQ----- 159
Query: 120 SVHVAAEAA--SDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
H + A D Q V DE VPV +T P + H
Sbjct: 160 --HFRRQDAVVKDGQVIVYGLDER--------VPVALNITHKPLSVTFHTF 200
>gi|296423271|ref|XP_002841178.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637413|emb|CAZ85369.1| unnamed protein product [Tuber melanosporum]
Length = 330
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 48 ELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGA 107
+ + +++ L LL K + + + E K W LYID +VIS DGN+LDA A
Sbjct: 144 DFAQAVTARLHRLLLSNKLISSQSLRILDPNTEEVKAYWVLYIDAVVISLDGNVLDAAWA 203
Query: 108 AIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDT 147
+I AAL +T +P +A D+ EV + E ++ +
Sbjct: 204 SILAALRSTRLP------QAYWDQDTEVVVCYPEVSRYKS 237
>gi|45184700|ref|NP_982418.1| AAL124Wp [Ashbya gossypii ATCC 10895]
gi|44980046|gb|AAS50242.1| AAL124Wp [Ashbya gossypii ATCC 10895]
gi|374105616|gb|AEY94527.1| FAAL124Wp [Ashbya gossypii FDAG1]
Length = 305
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 6/127 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T + + A++ +P +P +G I + SP A FE G E +S ++
Sbjct: 51 MGKTKIHCRISAQIAQPYEDRPFEGLFVISTEMSPMAGAQFENGNNTGEDEVLISRMIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + +DL L ++ G CW + D + DG +DA A+ L + P
Sbjct: 111 AV-----RRSSAMDLEGLCIIAGSKCWAIRADVHFLDCDGGFIDASCIAVMTGLLHFRKP 165
Query: 120 SVHVAAE 126
V V E
Sbjct: 166 DVSVQGE 172
>gi|358369855|dbj|GAA86468.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Aspergillus kawachii IFO 4308]
Length = 292
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 24/171 (14%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T +I + AE+ +P +P G I ++ + P ++ GR G+ +++ L
Sbjct: 51 LGKTSLIVRISAEVTKPHDDRPFDGLFTIAMELTAMGSPAWDNGRQGD-FETYVTNVLDR 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + +D SL +++G CW + D V DGNL+DA I A L
Sbjct: 110 VVRHSNA-----LDTESLCILKGVSCWSIRADVHVTDYDGNLIDAACIGIMAGLQ----- 159
Query: 120 SVHVAAEAA--SDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
H + A D Q V DE VPV +T P + H
Sbjct: 160 --HFRRQDAVVKDGQVIVYGLDER--------VPVALNITHKPLSVTFHTF 200
>gi|194766922|ref|XP_001965573.1| GF22565 [Drosophila ananassae]
gi|190619564|gb|EDV35088.1| GF22565 [Drosophila ananassae]
Length = 412
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V +++G P+ + ++GK+ + V+ A ++ L+S L+
Sbjct: 56 LGETKVLAQVSSDIGVPTTARANEGKLQLNVNIGGVAFLDEAQSTHDQRFLTLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL SL V + W + +D V++ DGNL DA A AAL + P
Sbjct: 116 FRSSRC-----LDLESLCVAAEQHVWCVRVDINVLNHDGNLYDASTIATLAALMHYRRPD 170
Query: 121 VHVA 124
V A
Sbjct: 171 VTFA 174
>gi|313236011|emb|CBY11338.1| unnamed protein product [Oikopleura dioica]
Length = 271
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 20/159 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T VI + AE +P+A P G ++ + CSP A+ + +S L
Sbjct: 59 LGNTKVICGITAETIKPAAATPKDGSFSVNFEFSSVCSPNAKAGPPNEVAQTMSIFLDGI 118
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L+ + + L + + W L+ID + DGN+ DA ++ ++L +
Sbjct: 119 LKQVF-----------ETNQLCIEPDLLAWTLFIDVYCLEDDGNVTDAAMMSVISSLRDL 167
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITT 155
+P + + E A +P V++ + D PV TT
Sbjct: 168 KLPEITIDEETA---KPVVNLEKQS--PVDLKMFPVSTT 201
>gi|207346511|gb|EDZ72988.1| YDR280Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 212
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V + ++ +P +P +G I + SP A FE G E S ++
Sbjct: 51 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ A L + P
Sbjct: 111 SVR--RSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKP 165
Query: 120 SVHVAAE 126
+ V E
Sbjct: 166 DITVHGE 172
>gi|328871066|gb|EGG19437.1| hypothetical protein DFA_00014 [Dictyostelium fasciculatum]
Length = 294
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 31/152 (20%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKG-------------KVAIFVDCSPTAEPTFEGRGGE 47
+G+T VIA VKAE+ A+ P + K+ + V+ P F
Sbjct: 52 IGNTSVIAGVKAEV----ALTPTQSDNSISSNNNNNNNKMFVNVEMGPICSNIFSSSKPS 107
Query: 48 E----LSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
E L ++L+S + + K +GK W LYID + +GNL+D
Sbjct: 108 EKAMSLCSQLNSLVNRLEINDKELYFDD---------QGKYSWYLYIDLYCLDYNGNLMD 158
Query: 104 ALGAAIKAALSNTGIPSVHVAAEAASDEQPEV 135
A AI +AL N +P + E+++ E P++
Sbjct: 159 ACVLAIMSALKNVKLPK-GIVVESSASEAPQL 189
>gi|281348318|gb|EFB23902.1| hypothetical protein PANDA_021543 [Ailuropoda melanoleuca]
Length = 196
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 72 IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDE 131
I L + GK+ W LY D + + DGN+LDA A+ AAL N +P V + E
Sbjct: 40 IQKEDLCISPGKLSWVLYCDIICLDYDGNILDACTFALLAALKNVQLPEVTINEETG--- 96
Query: 132 QPEVDISDEEFLQFDTSGVPVITTL 156
EV + + +L T PV T+
Sbjct: 97 LAEVHLKKKSYLNIRTH--PVATSF 119
>gi|403220409|dbj|BAM38542.1| exosome complex exonuclease [Theileria orientalis strain Shintoku]
Length = 296
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G+T V + E+ P+ +P++G + V+ SP ++ + L L++
Sbjct: 60 FGNTVVFCCISQEIVEPNFERPNEGFLYFNVELSPFTSENYDPGKTSDSENNLIYFLENI 119
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL +L V GK W L + V+ DGNLL A A A+LS P+
Sbjct: 120 F-----KESSFLDLETLCVKSGKEVWALRVYVHVLQDDGNLLGACSFAALASLSQYRKPN 174
Query: 121 VHVAAE 126
+ + E
Sbjct: 175 LQESEE 180
>gi|449269974|gb|EMC80708.1| Exosome complex exonuclease RRP43, partial [Columba livia]
Length = 277
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAE---LSSA 56
+G+T VI VKAEL P+A +KG + V+ F G GEE A ++
Sbjct: 54 LGNTTVICGVKAELAAPAADSANKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADV 113
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+++ + K L + GK+ W LY D + + DGN+LDA A+ AAL N
Sbjct: 114 IENSQMIAKE---------DLCIASGKLAWVLYCDIICLDYDGNILDASAFALLAALKNV 164
Query: 117 GIPSVHVAAEAASDE 131
+PSV + E E
Sbjct: 165 QLPSVTINEETGLSE 179
>gi|410083339|ref|XP_003959247.1| hypothetical protein KAFR_0J00440 [Kazachstania africana CBS 2517]
gi|372465838|emb|CCF60112.1| hypothetical protein KAFR_0J00440 [Kazachstania africana CBS 2517]
Length = 306
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEG---RGGEE--LSAELSS 55
MG T V + ++ +P +P +G I + +P A P FE G+E +S +
Sbjct: 51 MGETKVHVRISCQVTQPYEDRPFEGLFLISTESTPMAGPQFENGTNTSGDEVLISRIIEK 110
Query: 56 ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
A++ +SGA +D+ L +V G CW + + ++ DG +DA A+ A L +
Sbjct: 111 AIR------RSGA---LDVEGLCIVAGSKCWAVRANVHFLNCDGGFIDASCIAVIAGLMH 161
Query: 116 TGIPSVHVAAE 126
P + V E
Sbjct: 162 FKKPDITVHGE 172
>gi|321253395|ref|XP_003192721.1| exosome complex exonuclease rrp45 [Cryptococcus gattii WM276]
gi|317459190|gb|ADV20934.1| Exosome complex exonuclease rrp45, putative [Cryptococcus gattii
WM276]
Length = 281
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T ++A V A + +P +P +G + I + P A +E GR G++ +
Sbjct: 51 LGKTSILAQVSATIVKPRDDRPYEGFLLINSEIGPMASSVYENGRPGDD------EVMIG 104
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
LL ID +L ++ G+ W L + +S GNLLD A AAL + P
Sbjct: 105 RLLEKSIRRTEAIDREALCILAGEKVWQLRLTLHFLSDSGNLLDCAALAGMAALKHFRKP 164
Query: 120 SVHV 123
V V
Sbjct: 165 DVEV 168
>gi|386876626|ref|ZP_10118725.1| 3' exoribonuclease family, domain 1 [Candidatus Nitrosopumilus
salaria BD31]
gi|386805588|gb|EIJ65108.1| 3' exoribonuclease family, domain 1 [Candidatus Nitrosopumilus
salaria BD31]
Length = 272
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 22/170 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS----PTAEPTFE-GRGGEELSAELSS 55
+G T+VI VK + RP PD G IF+ C+ P + PT E G G ++ EL+
Sbjct: 54 LGETEVICGVKIQPDRPF---PDMGDKGIFI-CTAELLPLSHPTVETGPPGPDV-IELAR 108
Query: 56 ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
+ + ID+S LV+ K ++ D +V+ DGNL DA A AAL +
Sbjct: 109 VVDRGIRESHM-----IDVSQLVIEPNKSVVGVFADNVVVDYDGNLFDACSYAATAALLS 163
Query: 116 TGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
+ P + +A + + + E + + +PV T+ K+ +IV
Sbjct: 164 SKSPKWNWVDDAPT-------LVEGEDMPVPIATIPVSVTMGKIGSHIIV 206
>gi|323355606|gb|EGA87426.1| Rrp45p [Saccharomyces cerevisiae VL3]
Length = 212
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V + ++ +P +P +G I + SP A FE G E S ++
Sbjct: 51 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ A L + P
Sbjct: 111 SVR--RSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKP 165
Query: 120 SVHVAAE 126
+ V E
Sbjct: 166 DITVHGE 172
>gi|281206474|gb|EFA80660.1| hypothetical protein PPL_06243 [Polysphondylium pallidum PN500]
Length = 278
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 11/124 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPD----KGKVAIFVDCSPTAEPTFEGRGGEELSAELSSA 56
+G+T VI V+AE+ Q K ++ + ++ P F E + L +
Sbjct: 52 IGNTSVICGVRAEIAEKQQDQTTSNTCKSQIIVNIEMGPICSNIFSSTKPSEKAMSLCTQ 111
Query: 57 LQHCLLGGKSGAGAGIDLSSLVV-VEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
L + ID L V+GK W LY+D + +GN+LDA A+ +AL N
Sbjct: 112 LNQLV------QLLDIDPKQLYFDVDGKYLWYLYVDLYCLDYNGNILDAAIIAMLSALKN 165
Query: 116 TGIP 119
+P
Sbjct: 166 VKLP 169
>gi|213410258|ref|XP_002175899.1| exosome subunit Rrp45 [Schizosaccharomyces japonicus yFS275]
gi|212003946|gb|EEB09606.1| exosome subunit Rrp45 [Schizosaccharomyces japonicus yFS275]
Length = 291
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ + A++ +P +P G I + +P A P+ E GR ++ L
Sbjct: 51 LGETRVLCHITAQIAKPYPDKPFDGIFTIHTELTPMAHPSLEAGRLSDQ------EVLIS 104
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
L+ +D SL ++ G+ CW + ++ DGN++D
Sbjct: 105 RLIETSVRRSRALDTESLCILSGQKCWSVRATVHFVNHDGNMVD 148
>gi|170109350|ref|XP_001885882.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164639153|gb|EDR03426.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 282
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A V+A++ +P+ +P +G + I + P A +E GR +E ++ L
Sbjct: 50 LGKTRVLAQVEAKMVKPAPERPFQGTITIHSEILPMASSEYEPGRPSDE-EVTITRMLDK 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +S A +D SL ++ G+ W + + ++ GN+LD A AL + P
Sbjct: 109 VL--KRSDA---VDKESLCILAGQRVWHIRLTLHFLADAGNMLDCACLAGITALQHFRRP 163
Query: 120 SVHVAAE 126
V V +
Sbjct: 164 DVEVVGD 170
>gi|74026302|ref|XP_829717.1| exosome-associated protein 2 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|22797842|emb|CAD23610.1| exosome-associated protein 2 [Trypanosoma brucei]
gi|70835103|gb|EAN80605.1| exosome-associated protein 2 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 294
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 20/148 (13%)
Query: 9 SVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGA 68
+V G P + QPD+G++ + V A P F+ ++++A L + +S
Sbjct: 69 TVSGVFGPPPSDQPDEGRLTVDV-----AAPFFQSHSTDQVAAALREVARFV----RSTI 119
Query: 69 GAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAA 128
+ +DL+ L ++ G+ CW L ++ +++++DG L A A+ AA+ N +P +
Sbjct: 120 ISCMDLTELNIINGEACWVLQVELVILNADGGLRAAALHAVVAAIHNMLLPRSRL----- 174
Query: 129 SDEQPEVDISDEEFLQFDTSGVPVITTL 156
P D + L+F T +PV T+
Sbjct: 175 ----PNGDEVESRRLRFHT--IPVAVTI 196
>gi|342877488|gb|EGU78940.1| hypothetical protein FOXB_10540 [Fusarium oxysporum Fo5176]
Length = 247
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 3 STDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLL 62
S + A V AE+ P + +P G I + SP P++E LS L+ +
Sbjct: 7 SMEKQAKVSAEVTVPYSDRPFDGVFTITSELSPMVAPSYEVNRPSLEEVLLSRLLEKTI- 65
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
+SGA +D SL ++ G+ CW + +D V++ DGNL D
Sbjct: 66 -RRSGA---LDTESLCLIAGQKCWSIRVDLHVLTHDGNLTD 102
>gi|313236007|emb|CBY11334.1| unnamed protein product [Oikopleura dioica]
Length = 271
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 20/159 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T VI + AE +P+A P G ++ + CSP A+ + +S L
Sbjct: 59 LGNTKVICGITAETIKPAAATPKDGSFSVNFEFSSVCSPNAKAGPPNEVAQTMSIFLDGI 118
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L+ + L + + W L+ID + DGN+ DA ++ ++L +
Sbjct: 119 LKQVFQTNQ-----------LCIEPDLLAWTLFIDVYCLEDDGNVTDAAMMSVISSLRDL 167
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITT 155
+P + + E A +P V++ + D PV TT
Sbjct: 168 KLPEITIDEETA---KPLVNLEKQS--PVDLKMFPVSTT 201
>gi|342319215|gb|EGU11165.1| Hypothetical Protein RTG_02968 [Rhodotorula glutinis ATCC 204091]
Length = 331
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 10/121 (8%)
Query: 3 STDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLL 62
ST+V A V+ E+ + + + GKV + ++C+PTA P+ + L++ L+S L
Sbjct: 79 STEVWAGVRGEV--ENMDEEEGGKVVVSLECAPTALPSLKPDLPIHLASILTSLFSASTL 136
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSD-GNLLDALGAAIKAALSNTGIPSV 121
LS LVV+ W LY+D L++SS GN++D A ++AL+ IP
Sbjct: 137 PPSL-------LSQLVVLPKSRSWTLYLDILILSSSGGNIIDLAILAARSALATARIPQT 189
Query: 122 H 122
Sbjct: 190 R 190
>gi|358058357|dbj|GAA95876.1| hypothetical protein E5Q_02533 [Mixia osmundae IAM 14324]
Length = 280
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ +V+ E P M+PD+G + I + P A F + + L+S L+
Sbjct: 62 VGQTTMMCTVRVETAEPDLMRPDEGFLIINAELMPIASSQFLSGPPSDDAQVLASRLRQV 121
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + + L L + K +Y+D +S DGN LD A+ AL + IP
Sbjct: 122 I-----SSSNMLPLRKLGIRRAKAVLVVYVDVACLSFDGNALDVAVMAVTQALYSARIPV 176
Query: 121 VHVAAE 126
+ E
Sbjct: 177 ITFEEE 182
>gi|347829018|emb|CCD44715.1| similar to 3' exoribonuclease family protein [Botryotinia
fuckeliana]
Length = 344
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEF 142
K W LYID L IS DGN LDA AA+ +AL N +P H A+ E+ + D+E
Sbjct: 191 KAFWTLYIDILFISLDGNPLDAAWAAVVSALRNVRLPKAHWDADR------EMILCDDEV 244
Query: 143 ---LQFDTSGVPVITTL 156
+ G+P+ T
Sbjct: 245 SLSKKLTLRGLPIAATF 261
>gi|388582213|gb|EIM22518.1| ribosomal protein S5 domain 2-like protein [Wallemia sebi CBS
633.66]
Length = 422
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T +IA VK + P + + G V +D +P + ++ E + LSS +
Sbjct: 205 LGNTTMIAGVKLKTALPDPNR-EAGYVVPNIDLNPISNSKYKPGPPSEEAQVLSSRINDV 263
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
LL SG ++ L + +GK W +YID + I+ DGN DA AI AAL NT +P
Sbjct: 264 LLS--SGV---LNQKDLTIEQGKAVWVVYIDVVCINFDGNAFDAALIAIVAALRNTRLP 317
>gi|365766354|gb|EHN07852.1| Rrp45p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 305
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V + ++ +P +P +G I + SP A FE G E S ++
Sbjct: 51 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ A L + P
Sbjct: 111 SV--RRSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKP 165
Query: 120 SVHVAAE 126
+ V E
Sbjct: 166 DITVXGE 172
>gi|124513540|ref|XP_001350126.1| exoribonuclease PH, putative [Plasmodium falciparum 3D7]
gi|23615543|emb|CAD52535.1| exoribonuclease PH, putative [Plasmodium falciparum 3D7]
Length = 278
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 71/161 (44%), Gaps = 17/161 (10%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
+VI +K L P D+G V + +DC + R ++ +++ + + +
Sbjct: 49 NNVICGIKLSLITPDVDTYDEGNVNLQIDCPASVAA---NRIKKDHLQTMTTIIYNLCIK 105
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
I+ L ++ GK W + I+ +V+++ G LLD + AI AL +T P V
Sbjct: 106 N------NINKKILCILPGKFAWSVDINVMVLNAGGGLLDIISIAIYVALKDTFFPIVKP 159
Query: 124 AAE--------AASDEQPEVDISDEEFLQFDTSGVPVITTL 156
E S++ +++I + E + F +P+ ++
Sbjct: 160 KKEIEEENTFHEISNKDYQLEIVENEHVNFPYENIPICISI 200
>gi|261335755|emb|CBH18749.1| exosome-associated protein 2, putative [Trypanosoma brucei
gambiense DAL972]
Length = 294
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 20/148 (13%)
Query: 9 SVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGA 68
+V G P + QPD+G++ + V A P F+ ++++A L + +S
Sbjct: 69 TVSGVFGPPPSDQPDEGRLTVDV-----AAPFFQSHSTDQVAAALREVARFV----RSTI 119
Query: 69 GAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAA 128
+ +DL+ L ++ G+ CW L ++ +++++DG L A A+ AA+ N +P +
Sbjct: 120 ISCMDLTELNIINGEACWVLQVELVILNADGGLRAAALHAVVAAIHNMLLPRSRL----- 174
Query: 129 SDEQPEVDISDEEFLQFDTSGVPVITTL 156
P D + L+F T +PV T+
Sbjct: 175 ----PSGDEVESRRLRFHT--IPVAVTI 196
>gi|294461855|gb|ADE76485.1| unknown [Picea sitchensis]
Length = 302
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 76/180 (42%), Gaps = 38/180 (21%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G T ++A VK E+ P+A D+G++A+ CSP P +S +LS+
Sbjct: 64 IGHTTMLAGVKLEVMTPAAEALDEGRIAVDFQMPPICSPDVRPGRPVDAAAVISEQLSNV 123
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L SG I+L L + +G+ W Y+D + +DG L DA A A ++
Sbjct: 124 L------ASSGV---INLKELSISKGQAAWMAYLDIYCLDADGALFDAALLAAIGAFAHL 174
Query: 117 GIPSVHVAAEAA-------------SDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPL 163
P+V + E + EQP+V ++ TL KVPF L
Sbjct: 175 RFPAVSMTEEGKVIPLSGDTVLEDGNKEQPKVQEQRQQL------------TLGKVPFSL 222
>gi|159464609|ref|XP_001690534.1| hypothetical protein CHLREDRAFT_114378 [Chlamydomonas reinhardtii]
gi|158280034|gb|EDP05793.1| predicted protein [Chlamydomonas reinhardtii]
Length = 302
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 17/130 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSA---ELSSA 56
+G T V+A V+ E+ RP P G + + V+ +P + + GR + +SA +LSSA
Sbjct: 70 VGRTTVLAGVRLEIMRPDETAPAAGALVLSVEMAPFSSADYRPGRAPDHVSAVVEKLSSA 129
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L G+GA +L + EGK W +D V+ +DG +LDA A AAL +T
Sbjct: 130 LL--------GSGA-----ALCIAEGKAAWRALLDVYVLDADGCVLDAALLAAVAALRDT 176
Query: 117 GIPSVHVAAE 126
IP+V E
Sbjct: 177 RIPAVRNTRE 186
>gi|448262633|pdb|4IFD|A Chain A, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 304
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V + ++ +P +P +G I + SP A FE G E S ++
Sbjct: 50 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEK 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ A L + P
Sbjct: 110 SV--RRSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKP 164
Query: 120 SVHVAAE 126
+ V E
Sbjct: 165 DITVHGE 171
>gi|66801297|ref|XP_629574.1| hypothetical protein DDB_G0292692 [Dictyostelium discoideum AX4]
gi|60462952|gb|EAL61149.1| hypothetical protein DDB_G0292692 [Dictyostelium discoideum AX4]
Length = 293
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 17/155 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDK---------GKVAIFVDCSPTAEPTFEGRGGEELSA 51
+GST V+ V+AE+G ++ K + I ++ P TF +++
Sbjct: 52 IGSTSVVCGVRAEVGEKPSIDKSKFSTLNVHENKNIFINIELGPICSNTFSSSKPSDIAM 111
Query: 52 ELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKA 111
L S L + L+ EGK W LY+D + DGN+ DA +I +
Sbjct: 112 SLCSRL-NSLINRLEIPETDYYFDE----EGKALWYLYVDVYCLDYDGNIYDAAVLSIIS 166
Query: 112 ALSNTGIPS--VHVAAEAASD-EQPEVDISDEEFL 143
AL N +P + E D E P+ ++ + +L
Sbjct: 167 ALKNVKLPKGIIENNDEFYKDLESPQRKLNIQHYL 201
>gi|6320486|ref|NP_010566.1| Rrp45p [Saccharomyces cerevisiae S288c]
gi|14285753|sp|Q05636.1|RRP45_YEAST RecName: Full=Exosome complex component RRP45; AltName:
Full=Ribosomal RNA-processing protein 45
gi|266618484|pdb|2WP8|A Chain A, Yeast Rrp44 Nuclease
gi|1230649|gb|AAB64446.1| Ydr280wp [Saccharomyces cerevisiae]
gi|45269387|gb|AAS56074.1| YDR280W [Saccharomyces cerevisiae]
gi|151942253|gb|EDN60609.1| 3'-5'-exoribonuclease [Saccharomyces cerevisiae YJM789]
gi|190404776|gb|EDV08043.1| 3'->5' exoribonuclease [Saccharomyces cerevisiae RM11-1a]
gi|256270394|gb|EEU05592.1| Rrp45p [Saccharomyces cerevisiae JAY291]
gi|259145518|emb|CAY78782.1| Rrp45p [Saccharomyces cerevisiae EC1118]
gi|285811296|tpg|DAA12120.1| TPA: Rrp45p [Saccharomyces cerevisiae S288c]
gi|323309622|gb|EGA62830.1| Rrp45p [Saccharomyces cerevisiae FostersO]
gi|323349166|gb|EGA83396.1| Rrp45p [Saccharomyces cerevisiae Lalvin QA23]
gi|349577332|dbj|GAA22501.1| K7_Rrp45p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300393|gb|EIW11484.1| Rrp45p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 305
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V + ++ +P +P +G I + SP A FE G E S ++
Sbjct: 51 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ A L + P
Sbjct: 111 SV--RRSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKP 165
Query: 120 SVHVAAE 126
+ V E
Sbjct: 166 DITVHGE 172
>gi|323338208|gb|EGA79441.1| Rrp45p [Saccharomyces cerevisiae Vin13]
Length = 305
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V + ++ +P +P +G I + SP A FE G E S ++
Sbjct: 51 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ A L + P
Sbjct: 111 SV--RRSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKP 165
Query: 120 SVHVAAE 126
+ V E
Sbjct: 166 DITVHGE 172
>gi|323334135|gb|EGA75519.1| Rrp45p [Saccharomyces cerevisiae AWRI796]
Length = 255
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V + ++ +P +P +G I + SP A FE G E S ++
Sbjct: 1 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEK 60
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ A L + P
Sbjct: 61 SV--RRSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKP 115
Query: 120 SVHVAAE 126
+ V E
Sbjct: 116 DITVHGE 122
>gi|68076189|ref|XP_680014.1| exoribonuclease PH [Plasmodium berghei strain ANKA]
gi|56500878|emb|CAH99972.1| exoribonuclease PH, putative [Plasmodium berghei]
Length = 281
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 17/164 (10%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
+VI +K L P D+G V + +DC + + E L S C+
Sbjct: 49 NNVICGIKLSLLPPEQHSIDEGFVNLQIDCPASVASNRIKK--EHLQIMTSIIYDLCI-- 104
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
ID L V+ K W + I+ +V++ G LLD + AI AL++ IP V
Sbjct: 105 -----KNNIDKKKLCVLPSKFVWGIDINVMVLNGGGGLLDIISIAIYVALNDMNIPVVKA 159
Query: 124 AAE--------AASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
+ ++ E++I + E L F +P+ ++ ++
Sbjct: 160 PKKIDELNMFHNTKSKEYELEIVENEKLPFPCENIPICISIGEI 203
>gi|388579995|gb|EIM20313.1| exosome complex exonuclease rrp45 [Wallemia sebi CBS 633.66]
Length = 286
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 16/111 (14%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS----PTAEPTFEGRGGEE---LSAEL 53
+G V++SV + +P+ +P +G++ I + S P EP G EE L+ +L
Sbjct: 51 LGECSVMSSVSCTVTQPTPERPYEGQLNISSELSAMTTPFYEPGMRGNTAEEEATLNRQL 110
Query: 54 SSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDA 104
A++ +SG +D +L ++ G+ W L + IS DGNL+DA
Sbjct: 111 DKAIR------RSGM---VDREALCIIGGEKVWSLNLTLHYISDDGNLIDA 152
>gi|156056118|ref|XP_001593983.1| hypothetical protein SS1G_05411 [Sclerotinia sclerotiorum 1980]
gi|154703195|gb|EDO02934.1| hypothetical protein SS1G_05411 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 344
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEF 142
K W LYID L IS DGN DA AA+ +AL N +P H D E+ + D+E
Sbjct: 191 KAFWTLYIDILFISLDGNPFDAAWAAVVSALRNVRLPKAHW------DVDREMILCDDEI 244
Query: 143 ---LQFDTSGVPVITT 155
+ + G+PV T
Sbjct: 245 SLSKRLNLRGLPVAVT 260
>gi|448081285|ref|XP_004194851.1| Piso0_005372 [Millerozyma farinosa CBS 7064]
gi|359376273|emb|CCE86855.1| Piso0_005372 [Millerozyma farinosa CBS 7064]
Length = 305
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHC 60
G++ + V AE+ +P +P +G I + SP A P FE GR ++ L
Sbjct: 53 GNSKLTVRVSAEVVKPFEDRPFEGIFTINTEISPMASPQFEQGRVSDD------EILISR 106
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ +DL +L +V G W + D V+ DG ++DA + AL + P
Sbjct: 107 LIEKAIRRSNALDLEALCMVAGAKVWYIRADVNVLEFDGGIIDAASFGVMVALQHFRKPD 166
Query: 121 VHV 123
V +
Sbjct: 167 VSI 169
>gi|342320414|gb|EGU12354.1| Hypothetical Protein RTG_01376 [Rhodotorula glutinis ATCC 204091]
Length = 1080
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 18/137 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEG---RGG---------EE 48
+G T V+A V AE+ +P +P +G V + + SP A +E RGG E
Sbjct: 51 LGGTRVVAQVSAEIVKPLPDRPYEGFVNLVTEISPMASAAYEAGRLRGGACACDGVSKRE 110
Query: 49 LSAELSSA------LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLL 102
L++ + L LL +D +L +V G+ W + +D + +GNLL
Sbjct: 111 LTSTTARRASEDEVLMTRLLEKALRRSNTVDREALCIVAGQKVWSIRVDVHFLDDEGNLL 170
Query: 103 DALGAAIKAALSNTGIP 119
D A AL + P
Sbjct: 171 DCASIAAMTALRHFRKP 187
>gi|154302252|ref|XP_001551536.1| hypothetical protein BC1G_09909 [Botryotinia fuckeliana B05.10]
Length = 189
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 27/44 (61%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAE 126
K W LYID L IS DGN LDA AA+ +AL N +P H A+
Sbjct: 36 KAFWTLYIDILFISLDGNPLDAAWAAVVSALRNVRLPKAHWDAD 79
>gi|164660754|ref|XP_001731500.1| hypothetical protein MGL_1683 [Malassezia globosa CBS 7966]
gi|159105400|gb|EDP44286.1| hypothetical protein MGL_1683 [Malassezia globosa CBS 7966]
Length = 330
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE--GRGGEELSAELSSALQ 58
+G T +ASV+A L P +P +G V I D SP A ++ G G S E +AL
Sbjct: 54 LGDTIAVASVEAALSEPRRDRPYEGLVQIHADISPMAGVEYDSGGMFGASESRE-RAALF 112
Query: 59 HCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGI 118
LL +D +L V+ GKV W + + +++ G +DA A AL
Sbjct: 113 ERLLERAVRNTEAVDREALCVIAGKVVWCVSLTVHLLADQGASVDAAVLASMLALRQYRR 172
Query: 119 PSVHV 123
P V V
Sbjct: 173 PEVTV 177
>gi|83314648|ref|XP_730452.1| 3' exoribonuclease domain 1 [Plasmodium yoelii yoelii 17XNL]
gi|23490177|gb|EAA22017.1| 3' exoribonuclease family, domain 1, putative [Plasmodium yoelii
yoelii]
Length = 281
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 17/164 (10%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
+VI +K L P D+G V + +DC + + E L S C+
Sbjct: 49 NNVICGIKLSLLPPEPHSIDEGFVNLQIDCPASVASNRIKK--EHLQIMTSIIYDLCI-- 104
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
ID L V+ K W + I+ +V++ G LLD + AI AL++ IP V
Sbjct: 105 -----KNNIDKKKLCVLPSKFVWGIDINVMVLNGGGGLLDIISIAIYVALNDMNIPVVKA 159
Query: 124 AAE--------AASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
+ ++ E++I + E L F +P+ ++ ++
Sbjct: 160 PKKIDELNMFHNTKSKEYELEIVENEKLPFPCENIPICISIGEI 203
>gi|145344856|ref|XP_001416940.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577166|gb|ABO95233.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 285
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTA-EPTFEGR--GGEELSAELSSALQ 58
G+T A V A + P A +P++G + I VD +P A E +GR G E +A ++
Sbjct: 55 GATTACAGVTATIATPDATRPEEGFLEIAVDHAPQASEDARDGRTRGRREAAAAACASAV 114
Query: 59 HCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGI 118
+ A G DL L V G W + +D +V+ DG D A+ AAL + +
Sbjct: 115 ------ANAAVLGKDLKQLCVERGTFAWRVRVDVIVLCDDGGAADCAVTAVMAALRDCVL 168
Query: 119 PSVHV 123
P V V
Sbjct: 169 PEVAV 173
>gi|344234677|gb|EGV66545.1| ribosomal protein S5 domain 2-like protein [Candida tenuis ATCC
10573]
Length = 301
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 12/142 (8%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G T V+ +E+ +P +P++G + I + SP A F+ R +E+ ++ ++ +
Sbjct: 50 GQTKVVIKTSSEIVKPFEDRPNEGLLVINNELSPMASIKFDERSVDEVM--INRIIEKSI 107
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD-----ALGAAIKAALSNT 116
KS A +DL L + G+ W + +D +I+ DGNL+D ++ + I L N
Sbjct: 108 --RKSNA---LDLEGLCIKTGEKVWLIRVDLSIINFDGNLIDSCCFGSIISLIHFKLPNY 162
Query: 117 GIPSVHVAAEAASDEQPEVDIS 138
+ + DE+P + +S
Sbjct: 163 SLDTNGNIKVYNLDEKPPISLS 184
>gi|167392472|ref|XP_001740171.1| exosome complex exonuclease RRP45 [Entamoeba dispar SAW760]
gi|165895849|gb|EDR23438.1| exosome complex exonuclease RRP45, putative [Entamoeba dispar
SAW760]
Length = 244
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 31/170 (18%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTF-EGRGGEELSAELSSALQH 59
+G++ + E P +PD+G I V+ A P F + RG +L E+ ++
Sbjct: 39 IGNSKALGECVVEPVSPGRSRPDQGIFNIRVNFLEMANPNFYDSRGPRDL-IEIGKVVER 97
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALG-AAIKAALSNTGI 118
LL ++ ID+ LV++ GK+ W + + +I+ GNL+D + AI A L+
Sbjct: 98 GLLSTRA-----IDVDGLVIIRGKLVWKITVCVHIINDCGNLMDLVSITAISALLT---- 148
Query: 119 PSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
A E +Q + V ++T + P PL +H++
Sbjct: 149 --------AVRRE-----------VQICGTDVKILTPEERKPVPLAIHHI 179
>gi|85113698|ref|XP_964565.1| hypothetical protein NCU03159 [Neurospora crassa OR74A]
gi|28926352|gb|EAA35329.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 357
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDI---SD 139
K W LYID L +S DGN DA A+ AAL +T +P +A D E + S+
Sbjct: 199 KAYWVLYIDLLFVSFDGNPFDAAWTAVMAALRDTKLP------QARWDPDREAVVCSRSE 252
Query: 140 EEFLQFDTSGVPVITTLT 157
E + D G+PV T T
Sbjct: 253 EAKMALDVRGLPVACTAT 270
>gi|309266685|ref|XP_001481151.2| PREDICTED: exosome complex component rrp43-like [Mus musculus]
Length = 418
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDI---SD 139
K W LYID L +S DGN DA A+ AAL +T +P +A D E + S+
Sbjct: 260 KAYWVLYIDLLFVSFDGNPFDAAWTAVMAALRDTKLP------QARWDPDREAVVCSRSE 313
Query: 140 EEFLQFDTSGVPVITTLT 157
E + D G+PV T T
Sbjct: 314 EAKMALDVRGLPVACTAT 331
>gi|82752803|ref|XP_727434.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23483275|gb|EAA18999.1| similar to S. cerevisiae RRP45, putative [Plasmodium yoelii yoelii]
Length = 391
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 13/163 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ + +E+ +P +P++G + I +D + + E+ + ++
Sbjct: 47 IGNTKVVCKITSEIVKPYDKKPNEGIIKINLDVESFNTYNNDISKITDECLEIKNLIERI 106
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
A ++ SL ++ K W L I+ VI +DGNL D+ + +AL + +
Sbjct: 107 F-----KASNILNFESLCIIPYKKVWCLLINITVIENDGNLYDSCYLSAYSALLHFRNNN 161
Query: 121 VHVAAEAASDEQPEVDISDEE--FLQFDTSGVPVITTLTKVPF 161
V++ D V I +EE + P++TT F
Sbjct: 162 VNI------DNTGNVIIDEEEVNYTSLSVHNSPILTTFAYFNF 198
>gi|70944649|ref|XP_742234.1| exoribonuclease PH [Plasmodium chabaudi chabaudi]
gi|56521094|emb|CAH75418.1| exoribonuclease PH, putative [Plasmodium chabaudi chabaudi]
Length = 281
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 17/164 (10%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
+VI +K L P D+G V + +DC + + E L S C+
Sbjct: 49 NNVICGIKLSLLPPDQNSIDEGFVNLQIDCPASVASNRIKK--EHLEIMTSIIYDLCI-- 104
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
ID L V+ K W + I+ +V++ G LLD + AI AL++ IP V
Sbjct: 105 -----KNNIDKKKLCVLPSKFVWGIDINVMVLNGGGGLLDIISIAIYVALNDMNIPVVKA 159
Query: 124 AAE--------AASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
+ ++ E++I + E L F +P+ ++ ++
Sbjct: 160 PKKIDELNMFHNTKSKEYELEIVENEKLPFPCDNIPICISIGEI 203
>gi|167537668|ref|XP_001750502.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771042|gb|EDQ84716.1| predicted protein [Monosiga brevicollis MX1]
Length = 1499
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 21/148 (14%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD------CSPTAEPTFEGRGGEELSAELS 54
MG T V+AS+KAE P + P+ + + CS T P LS LS
Sbjct: 1258 MGKTSVMASLKAEFANPP-LNPNAASGWLVANVTMPPMCSSTITPGPPSTQARALSTFLS 1316
Query: 55 SAL-QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
L +H + + LV+ K+ W L++D +V++ DGNL DA+ A AAL
Sbjct: 1317 DILLRHNV----------VRPEQLVIKANKLVWCLFLDVVVLNDDGNLPDAILLAAAAAL 1366
Query: 114 SNTGIPSVHVAAE---AASDEQPEVDIS 138
+P+V A E A D P VD S
Sbjct: 1367 QTATLPTVESADENEDAGEDTIPTVDPS 1394
>gi|67611512|ref|XP_667161.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54658268|gb|EAL36931.1| hypothetical protein Chro.80046 [Cryptosporidium hominis]
Length = 77
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 65 KSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
K D S L ++E K+ W++YID ++S GN++D + AI AL T
Sbjct: 25 KDMCFKNFDFSKLTILENKLYWNIYIDATILSFGGNMVDWVTIAIHTALRTT 76
>gi|345571178|gb|EGX53993.1| hypothetical protein AOL_s00004g652 [Arthrobotrys oligospora ATCC
24927]
Length = 353
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 86 WDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQF 145
W LY+D L IS DGN+LDA AI AA+ ++ +P AS Q E I E L
Sbjct: 194 WSLYVDVLCISLDGNILDAAWYAIVAAIKSSRLP-------LASWNQAEERIFCHESLSH 246
Query: 146 DTS---GVPVITTLTKVPFP 162
S +P TT +P P
Sbjct: 247 PISLRQSLPFTTTFALIPLP 266
>gi|209879934|ref|XP_002141407.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209557013|gb|EEA07058.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 414
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTA-EPTFEGRGGEE--LSAELSSAL 57
+G T V+ +KAEL P+ +P +G+V VD P + P + E LS EL++ +
Sbjct: 41 IGKTHVLCIIKAELMIPNIDRPSEGQVTFSVDYGPLSLNPNGQVYRHERNALSIELANYI 100
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
+ L ++GA D L ++ G W + D + DGNL D A +A
Sbjct: 101 ERTL--KETGA---FDTEVLCIISGLCAWSIRCDIRALCDDGNLFDTCILATLSAF 151
>gi|254572173|ref|XP_002493196.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|238032994|emb|CAY71017.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|328352789|emb|CCA39187.1| exosome complex component RRP45 [Komagataella pastoris CBS 7435]
Length = 298
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTF-EGRGGEELSAELSSALQH 59
+G V+ + +E+ P +P +G + + P+F E +E LS ++
Sbjct: 45 LGDAKVVVRISSEIVTPYEDRPFEGIFQVSSELDGMGHPSFNEASHRQEEEVMLSRLIEK 104
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +S A +DL SL ++ G+ CW + D +I DGN+ D + + A L + P
Sbjct: 105 AI--RRSNA---LDLESLCIIAGQKCWSVRADVHIIDYDGNMTDIVCIGVIAGLLHFKKP 159
Query: 120 SVHV 123
+ +
Sbjct: 160 DISI 163
>gi|195379528|ref|XP_002048530.1| GJ11305 [Drosophila virilis]
gi|194155688|gb|EDW70872.1| GJ11305 [Drosophila virilis]
Length = 423
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V ++G PS+ + ++G + + VD A ++ L+S L+
Sbjct: 56 IGETKVLAQVSCDIGTPSSARANEGTLFLNVDIKGVAFLDEAQATHDQRFLTLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL SL + + W + +D V++ DGNL DA A AAL + P
Sbjct: 116 FKSSRC-----LDLESLCIAVEQSVWCVRVDINVLNHDGNLYDASTIAALAALMHFRRPE 170
Query: 121 VHVAAE 126
V E
Sbjct: 171 VSYVEE 176
>gi|326435509|gb|EGD81079.1| hypothetical protein PTSG_11024 [Salpingoeca sp. ATCC 50818]
Length = 255
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 6/139 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +K E P + G + V P F + LS +
Sbjct: 58 LGKTSVVCGIKLEFADPPLDNDNVGWIVPTVTLPPLCSDRFTPGPPPAEAQRLSEFITDI 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +D L ++ GK+ W LY+D ++ DGN++DA A AAL + +P
Sbjct: 118 FC-----SDTMLDKHDLCIIPGKLSWALYLDIQCVNYDGNVVDACVLAAMAALQSVTLPK 172
Query: 121 VHVAAEAASDE-QPEVDIS 138
V + ++ + E P +D S
Sbjct: 173 VELPSDLSDLEGLPSIDRS 191
>gi|312374015|gb|EFR21670.1| hypothetical protein AND_16645 [Anopheles darlingi]
Length = 371
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 29 IFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDL 88
+ V+ P A P F+G + S L+ L+ L SG +DL SL +V + W+L
Sbjct: 4 VNVELGPMAAPHFDGGRQSDESVHLNRILERAL--KDSGC---VDLESLCLVAEEKVWNL 58
Query: 89 YIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAE 126
ID V++ +GN++D A AL++ P + V E
Sbjct: 59 RIDVTVLNHEGNVIDCCSIAALTALAHFKRPDITVDGE 96
>gi|198426220|ref|XP_002120565.1| PREDICTED: similar to Exosome complex exonuclease RRP43 (Ribosomal
RNA-processing protein 43) (Exosome component 8) (p9)
(Opa-interacting protein 2) [Ciona intestinalis]
Length = 279
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 13/131 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T V+ VKAEL +P+A +P KG + +D CS +P G A++ +
Sbjct: 53 IGNTMVMCGVKAELTQPTAEEPKKGIIVPNLDLPALCSSKFKP-----GPPNTQAQVGTK 107
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L ++ L +V K+ W LY D ++ DG ++DA A+ AAL +
Sbjct: 108 F----LDNLIKIANLVNSEDLCIVPDKLVWVLYCDVTCLNYDGCVIDAAVVALVAALRSV 163
Query: 117 GIPSVHVAAEA 127
+PSV + E
Sbjct: 164 SLPSVTLNEET 174
>gi|148703330|gb|EDL35277.1| exosome component 8, isoform CRA_e [Mus musculus]
Length = 146
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 86 WDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQF 145
W LY D + + DGN+LDA A+ AAL N +P V + E A EV++ + +L
Sbjct: 3 WVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETA---LAEVNLKKKSYLNV 59
Query: 146 DTSGVPVITTL 156
T+ PV T+
Sbjct: 60 RTN--PVATSF 68
>gi|448522633|ref|XP_003868739.1| hypothetical protein CORT_0C04610 [Candida orthopsilosis Co 90-125]
gi|380353079|emb|CCG25835.1| hypothetical protein CORT_0C04610 [Candida orthopsilosis]
Length = 329
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 17/162 (10%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G T + V A++ +P +P +G I + SP A F+ ++ L S +
Sbjct: 56 GKTKLSVRVTAQIVKPYPDRPFEGIFTINSEISPQASLKFDTTRAQQQDETLVSRI---- 111
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
L +DL SL ++ G W+L +D + DGNL+D A +L + P +
Sbjct: 112 LEKAIRRSNAVDLESLCIIAGDKVWELVVDLNFWNYDGNLIDVGCFATMLSLLHFRKPDI 171
Query: 122 HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPL 163
+ + E+ + DE Q PV ++ VP L
Sbjct: 172 SINGD-------EIVVHDENERQ------PVSLSILHVPICL 200
>gi|118388111|ref|XP_001027156.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila]
gi|89308926|gb|EAS06914.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila SB210]
Length = 270
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
S ++ +K E+G D+GK+ + ++ +A+ T + R E + L +
Sbjct: 55 NSVNIYTGIKVEIGETD---NDEGKIILKIE---SAQRTEQNRDQENHINSDKNTLIYLE 108
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISS-DGNLLDALGAAIKAALSNTGIPS 120
I SL +VE K CW L ID ++ S + L+ + A I AAL + +P
Sbjct: 109 ALLNKYLIQNICKKSLCIVEKKKCWILNIDVFILESVEIAYLNLMAAGINAALEDLVLPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTS 148
+ + ++E E+ + +E+F F S
Sbjct: 169 ISITHNNLTNE-DEITLIEEQFQSFSIS 195
>gi|167044982|gb|ABZ09647.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8G2]
Length = 272
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS----PTAEPTFEGRGGEELSAELSSA 56
+G T+V++ +K + +P PD G IF+ C+ P A P+ E + E++
Sbjct: 54 LGDTEVVSGIKIQPDKPF---PDMGDKGIFI-CTAEILPLAHPSAETGPPQPNVIEIARV 109
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + +SG IDLS LV+ + K ++ D +V DGNL DA A AA+ +
Sbjct: 110 VDRGI--RESGM---IDLSQLVLQKDKSVIGVFADNVVTDHDGNLFDACSYAAVAAIITS 164
Query: 117 GIPS 120
IP
Sbjct: 165 KIPK 168
>gi|67474914|ref|XP_653189.1| exosome complex exonuclease [Entamoeba histolytica HM-1:IMSS]
gi|56470120|gb|EAL47803.1| exosome complex exonuclease, putative [Entamoeba histolytica
HM-1:IMSS]
gi|407042424|gb|EKE41318.1| exosome complex exonuclease, putative [Entamoeba nuttalli P19]
gi|449703501|gb|EMD43942.1| exosome complex exonuclease, putative [Entamoeba histolytica KU27]
Length = 265
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 31/154 (20%)
Query: 17 PSAMQPDKGKVAIFVDCSPTAEPTF-EGRGGEELSAELSSALQHCLLGGKSGAGAGIDLS 75
P +PD+G I V+ A P F + RG +L E+ ++ LL ++ ID+
Sbjct: 55 PGRSRPDQGIFNIRVNFLEMANPNFYDSRGPRDL-IEIGKVVERGLLSTRA-----IDVD 108
Query: 76 SLVVVEGKVCWDLYIDGLVISSDGNLLDALG-AAIKAALSNTGIPSVHVAAEAASDEQPE 134
LV++ GK+ W + + +I+ GNL+D + AI A L+ A E
Sbjct: 109 GLVIIRGKLVWKITVCVHIINDCGNLMDLVSITAISALLT------------AVRRE--- 153
Query: 135 VDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
+Q + V ++T + P PL +H++
Sbjct: 154 --------VQICGTDVKILTPEERKPVPLAIHHI 179
>gi|221058609|ref|XP_002259950.1| exoribonuclease PH [Plasmodium knowlesi strain H]
gi|193810023|emb|CAQ41217.1| exoribonuclease PH, putative [Plasmodium knowlesi strain H]
Length = 281
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
+VI +K L PS PD+G + + +DC + + ++ + + L CL
Sbjct: 49 NNVICGIKLSLLTPSLDAPDEGVINLQIDCPASVAANRIKKDHLQIMSSIIYDL--CL-- 104
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
ID L ++ K W + I +V+++ G LLD + AI AL +T +P V
Sbjct: 105 -----KNNIDRKKLCILPSKFVWGVDISVMVLNAGGGLLDIISMAIYVALKDTVVPVV 157
>gi|343426343|emb|CBQ69873.1| related to Exosome complex exonuclease RRP43 [Sporisorium reilianum
SRZ2]
Length = 323
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T IA++KAE+ P + +G + V+ CS +P G + L++ L +
Sbjct: 81 IGNTSCIAAIKAEVAAPQLSRSREGYLIPNVELPAVCSSKFKPGVPGDESQVLTSRLLAL 140
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L + +D L + E K W LY+D I DGN +DA A AALSNT
Sbjct: 141 L---------NSSNVLDREQLCIHEAKAVWCLYLDISFICFDGNAMDAAVLAAVAALSNT 191
Query: 117 GI 118
+
Sbjct: 192 KL 193
>gi|167044511|gb|ABZ09186.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG6J21]
Length = 272
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS----PTAEPTFEGRGGEELSAELSSA 56
+G T+V++ +K + +P PD G IF+ C+ P A P+ E + E++
Sbjct: 54 LGDTEVVSGIKVQPDKPF---PDMGDKGIFI-CTAEILPLAHPSAETGPPQPNVIEIARV 109
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + +SG IDLS +V+ + K ++ D +V DGNL DA A AA+ +
Sbjct: 110 VDRGI--RESGM---IDLSQMVLQKDKSVIGVFADNVVTDHDGNLFDACSYAAVAAIITS 164
Query: 117 GIPS 120
IP
Sbjct: 165 KIPK 168
>gi|115443084|ref|XP_001218349.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188218|gb|EAU29918.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 294
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Query: 1 MGSTDV--IASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSAL 57
+G T V I + +E+ +P +P G I ++ + P ++ GR G+ L +++ L
Sbjct: 51 LGKTRVSLIVRISSEVTKPRDDRPFDGIFTIALELTAMGSPAWDNGRQGD-LETYVTNVL 109
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
+ + +D SL +++G CW + D + DGNL+DA + A L +
Sbjct: 110 DRVVRHSNA-----LDTESLCILKGVSCWSVRADVHITDYDGNLIDAACIGVMAGLQHFR 164
Query: 118 IPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
P V D Q V DE VPV +T P + H
Sbjct: 165 RPDAVV-----KDGQVIVYGVDER--------VPVALNITHKPLSVTFHTF 202
>gi|354547981|emb|CCE44716.1| hypothetical protein CPAR2_405200 [Candida parapsilosis]
Length = 330
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 11/139 (7%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G+T + V A++ +P +P +G I + SP A F+ ++ L S +
Sbjct: 56 GATKLSVRVTAQIVKPYPDRPFEGIFTINSEVSPQASLKFDTTRQQQQDEVLVSRI---- 111
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP-- 119
L +DL SL +V G W+L +D + DGNL+D A AL + P
Sbjct: 112 LEKAIRRSNAVDLESLCIVAGDKVWELCVDLNFWNYDGNLIDVGCFATMLALLHFRKPDI 171
Query: 120 SVH-----VAAEAASDEQP 133
S+H V ++ QP
Sbjct: 172 SIHGDGGAVTVHDVNERQP 190
>gi|392559741|gb|EIW52925.1| ribosomal protein S5 domain 2-like protein [Trametes versicolor
FP-101664 SS1]
Length = 283
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 5/133 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V ++ +P +P +G + I + S A FE + ++ L
Sbjct: 51 LGKTRVLAQVDGKMVKPLPERPLEGIITIHSELSSMASNEFEPGRPSDQEVTITRMLDKV 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L +S A +D SL V+ G+ W + + V+S GN+LD A AL + P
Sbjct: 111 L--RRSDA---VDKESLCVLAGQRVWHIRLTIHVLSDAGNMLDCACLAGIVALKHFRRPE 165
Query: 121 VHVAAEAASDEQP 133
V V + + P
Sbjct: 166 VEVQGDEVTIHHP 178
>gi|443919691|gb|ELU39792.1| exosome complex exonuclease rrp45 [Rhizoctonia solani AG-1 IA]
Length = 372
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 3/124 (2%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T +A+V A + RP +P +G V I + SP A ++ E L+ L C
Sbjct: 132 MGKTSALANVSATMTRPRPDRPYEGTVTIHTELSPMAAAIYDAGRLFEGVRPLTEKL--C 189
Query: 61 LLGGKSGAGAGIDLSSLVVV-EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ S L +L G+ W L + V+S +GN+LD A AL + P
Sbjct: 190 VFSPDSRYAIDSPLLTLNPFGLGQKVWALRLTIHVLSDEGNMLDCACLAAVTALRHFRRP 249
Query: 120 SVHV 123
V V
Sbjct: 250 DVEV 253
>gi|163311569|gb|ABY26743.1| Rrp45p, partial [Pichia kudriavzevii]
Length = 353
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%)
Query: 71 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASD 130
+DL SL ++ G+ CW + D ++SDGNL+DA A+ AL + P V +
Sbjct: 124 ALDLESLCIIAGQKCWAVRADVRFLNSDGNLVDAASIAVITALLHFRKPDVELVGSGEGT 183
Query: 131 EQPEVDISDEEFLQFDTSGVPVITTL 156
E D E + +P+ T
Sbjct: 184 ELIIYDEKQREMVPLSILHIPICVTF 209
>gi|167521539|ref|XP_001745108.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776722|gb|EDQ90341.1| predicted protein [Monosiga brevicollis MX1]
Length = 313
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 36/181 (19%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIF-------------------VDCSPTAEPTFEGR 44
TDV+ VKAE G D+G++ + V + +A GR
Sbjct: 58 TDVLVGVKAERGVALGQNEDEGQIEVLSRMFKKTQHALGNVVEQFAVQFASSATAMLSGR 117
Query: 45 GGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGN-LLD 103
E+ ++ ALQ + GA ID +L ++ G+ + L +D ++++++G + D
Sbjct: 118 EREDYGRAIALALQE--MADVRGA---IDRQALCIIAGREAFTLKVDVMILAANGGAIYD 172
Query: 104 ALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFL-----QFDTSGVPVITTLTK 158
A+ AAL++ IPSV + +A + D+ D EF Q D S +P++TT+
Sbjct: 173 TAAVAVYAALASCDIPSVTLVKDA------DGDVVDWEFADTPDHQLDVSRLPLLTTIAS 226
Query: 159 V 159
+
Sbjct: 227 I 227
>gi|241952166|ref|XP_002418805.1| exosome complex exonuclease, putative; ribosomal RNA-processing
protein, putative [Candida dubliniensis CD36]
gi|223642144|emb|CAX44110.1| exosome complex exonuclease, putative [Candida dubliniensis CD36]
Length = 331
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 17/167 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGE---ELSAELSSAL 57
+G T V+ ++ + + P +P +G + I +C + + E ++ AL
Sbjct: 60 LGKTKVMVNITSRITEPYQDRPFEGIMTI--NCEIPNHIKIQSNDNDNEDEFINLINRAL 117
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
+ +S A +DL +L ++ G+ W+L ID V++ DGNL+D+ AI AL +
Sbjct: 118 DRAI--RRSNA---VDLENLCIIAGEKVWELIIDLQVLNYDGNLIDSGCLAIITALLDFK 172
Query: 118 IPSVHVAAEAASDEQP---EVDISDEE----FLQFDTSGVPVITTLT 157
P V + S + I D+E F++ +P+ T +
Sbjct: 173 KPDVTINNNNTSSNSSTSGNIIIHDDEMKRPFIELSILHIPICLTFS 219
>gi|365761400|gb|EHN03058.1| Rrp45p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401838753|gb|EJT42221.1| RRP45-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 305
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V + ++ +P +P +G I + SP A FE G E S ++
Sbjct: 51 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ L + P
Sbjct: 111 SV--RRSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVITGLMHFKKP 165
Query: 120 SVHVAAE 126
+ V E
Sbjct: 166 DITVHGE 172
>gi|225678125|gb|EEH16409.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 352
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
E K W LYID L+IS GNL DA A+ AAL N +P
Sbjct: 253 ETKAFWTLYIDVLIISHAGNLFDAAWGAVVAALHNMRLP 291
>gi|399218325|emb|CCF75212.1| unnamed protein product [Babesia microti strain RI]
Length = 278
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
GST V+ +V E+ P +P +G V+ FE E + S ++H
Sbjct: 46 FGSTIVLCTVNGEVIPPVDSRPTEGFYHFHVEIGSLTTVGFEPGKPTEQEMFICSTIEHL 105
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDA 104
L SG I+ SL +V GK W + +D LV+ GN LDA
Sbjct: 106 L--RDSGT---IETESLCIVSGKYVWSIRVDMLVLEDAGNALDA 144
>gi|453088579|gb|EMF16619.1| ribosomal protein S5 domain 2-like protein [Mycosphaerella
populorum SO2202]
Length = 331
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEF 142
K W LY+D L ++ DGN LDA A+ AAL +T +P H A+ S + + DE+
Sbjct: 175 KAYWTLYVDILCLALDGNALDAAWLAVYAALRDTRLPGAHWDADRESVVCSPLAL-DEKR 233
Query: 143 LQFDTSGVPVITTL 156
LQ +P+++T
Sbjct: 234 LQI--RDLPIVSTF 245
>gi|342186653|emb|CCC96140.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 280
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 20/151 (13%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGK 65
V SV G P QP++G++ + V + P F+ + ++ +AL+ +
Sbjct: 66 VSCSVSGLFGPPPPDQPEEGRLTVNV-----SAPFFQ----SHIMDQVGTALREVAWFVQ 116
Query: 66 SGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAA 125
S + +DL+ L ++ G+ CW L + +V+++DG L A A AA+ N +P +
Sbjct: 117 STITSCMDLTELSIISGEACWVLQTELVVLNADGGLRAAALHAAVAAMQNMLLPRSRL-- 174
Query: 126 EAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
P D+ + ++F T VPV T+
Sbjct: 175 -------PNGDMVESRRIRFHT--VPVAVTI 196
>gi|225558044|gb|EEH06329.1| 3' exoribonuclease [Ajellomyces capsulatus G186AR]
Length = 437
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 25/39 (64%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
E K W LYID L+IS GNL DA AI AAL +T +P
Sbjct: 249 EIKAFWTLYIDVLIISHAGNLFDAAWGAIVAALRDTRLP 287
>gi|295662695|ref|XP_002791901.1| 3' exoribonuclease family protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226279553|gb|EEH35119.1| 3' exoribonuclease family protein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 436
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 25/40 (62%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
E K W LYID L+IS GNL DA A+ AAL +T +P
Sbjct: 250 ETKAFWTLYIDVLIISHAGNLFDAAWGAVVAALHDTRLPK 289
>gi|66824935|ref|XP_645822.1| hypothetical protein DDB_G0271100 [Dictyostelium discoideum AX4]
gi|60473944|gb|EAL71882.1| hypothetical protein DDB_G0271100 [Dictyostelium discoideum AX4]
Length = 526
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 9/142 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V ++ ++ P +P++G D SP + + + +EL ++
Sbjct: 49 LGKTRVFTAITCDIVEPKPERPNEGFYIFNTDISPMSSVSVNVNQPNPMESELGRIIEKG 108
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ ID +L ++ G W + I V+ GNLLD ++ AL + P
Sbjct: 109 LKDSRA-----IDTEALCIISGSKVWSIKIAIHVLDDCGNLLDCASISVMTALIHFRKPD 163
Query: 121 VHVAAEAAS----DEQPEVDIS 138
V V A+ DE+ V +S
Sbjct: 164 VTVIGNDATIHSLDEREPVPLS 185
>gi|343426851|emb|CBQ70379.1| probable RRP45-Exosome complex exonuclease [Sporisorium reilianum
SRZ2]
Length = 316
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 22/165 (13%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGG-EELSAELSSALQHCLL 62
T V SVKA L P + +P +G + I D SP A ++ GG SA L L+
Sbjct: 56 TRVSTSVKATLIPPRSDRPYEGFLQITTDISPMAGIEYDTTGGGANSSARAREVLFERLI 115
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVH 122
+D +L VV G+ W++++ +LL GAA+ AA+ + + H
Sbjct: 116 EKAVRRTEAVDREALCVVAGEQVWNVHL-------SVHLLSDTGAALDAAVLCSMLSLRH 168
Query: 123 VAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHN 167
+P+ I + + V + +T +VP PL +H+
Sbjct: 169 F-------RRPDYAID-------NGTHVHLFSTDERVPVPLAIHH 199
>gi|226287622|gb|EEH43135.1| 3' exoribonuclease family protein [Paracoccidioides brasiliensis
Pb18]
Length = 439
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
E K W LYID L+IS GNL DA A+ AAL N +P
Sbjct: 253 ETKAFWTLYIDVLIISHAGNLFDAAWGAVVAALHNMRLP 291
>gi|149048738|gb|EDM01279.1| exosome component 9, isoform CRA_a [Rattus norvegicus]
Length = 353
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 37 AEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVIS 96
A P FE +L +L+ L+ CL K ID SL VV G+ W + +D +++
Sbjct: 2 AAPAFEPGRQSDLLVKLNRLLERCLRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLN 56
Query: 97 SDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPE 134
DGN++DA A AL + P V V E + PE
Sbjct: 57 HDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE 94
>gi|148703132|gb|EDL35079.1| exosome component 9, isoform CRA_b [Mus musculus]
Length = 353
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 37 AEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVIS 96
A P FE +L +L+ L+ CL K ID SL VV G+ W + +D +++
Sbjct: 2 AAPAFEPGRQSDLLVKLNRLLERCLRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLN 56
Query: 97 SDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPE 134
DGN++DA A AL + P V V E + PE
Sbjct: 57 HDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE 94
>gi|428170337|gb|EKX39263.1| hypothetical protein GUITHDRAFT_76548 [Guillardia theta CCMP2712]
Length = 277
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 24/167 (14%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-------GRGGEELSAEL 53
+G T V A + + PSA + +G V + V+ P F+ + LSA L
Sbjct: 38 VGRTVVAAGINLSVVCPSASRGAEGIVRVTVEFGPACSSRFQHFRYRKANLKAQALSAHL 97
Query: 54 SSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
+ + + +DLS+LV+ E W + + ++ GNL DA A+ +AL
Sbjct: 98 TRVINEARV---------VDLSALVMKEDAAVWVVDVHVTCLNHGGNLEDASMLAVLSAL 148
Query: 114 SNTGIPSVH-----VAAEAASDEQPEVDIS---DEEFLQFDTSGVPV 152
+T +P+V V AE D P V S F FD VPV
Sbjct: 149 VDTKLPAVEMKENDVMAEVEGDSVPLVIQSFPISHTFALFDFGDVPV 195
>gi|320166868|gb|EFW43767.1| opa-interacting protein 2 [Capsaspora owczarzaki ATCC 30864]
Length = 269
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 66 SGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAA 125
+GA +DL+ L + G++CW LY+D + + GN DA AI AL +P+V +
Sbjct: 99 AGARGIVDLNELCITRGELCWCLYVDAVCLDDAGNSTDAALLAIVGALHALVLPAVTL-- 156
Query: 126 EAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPF 161
+AAS + F+ SG TL PF
Sbjct: 157 DAASGKP-----------GFNPSGNSTQLTLPATPF 181
>gi|240273287|gb|EER36808.1| 3' exoribonuclease [Ajellomyces capsulatus H143]
Length = 367
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 24/37 (64%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
K W LYID L+IS GNL DA AI AAL +T +P
Sbjct: 237 KAFWTLYIDVLIISHAGNLFDAAWGAIVAALRDTRLP 273
>gi|430811931|emb|CCJ30637.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 250
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 72 IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDE 131
+D SL ++ GK CW + D + DGNL+DA A+ AAL + P V V E
Sbjct: 84 LDKESLCIIYGKQCWSIRADVHYLDHDGNLIDATSIAVVAALYHFKKPVVTVEGEKVIVH 143
Query: 132 QPEVDISDEEFLQFDTSGVPVITTLTKVPFPL 163
E VPV LT +P +
Sbjct: 144 SIE-------------ERVPVPLILTHIPISI 162
>gi|325095771|gb|EGC49081.1| 3' exoribonuclease [Ajellomyces capsulatus H88]
Length = 421
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 24/37 (64%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
K W LYID L+IS GNL DA AI AAL +T +P
Sbjct: 237 KAFWTLYIDVLIISHAGNLFDAAWGAIVAALRDTRLP 273
>gi|154280581|ref|XP_001541103.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150411282|gb|EDN06670.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 440
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 24/37 (64%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
K W LYID L+IS GNL DA AI AAL +T +P
Sbjct: 252 KAFWTLYIDVLIISHAGNLFDAAWGAIVAALRDTRLP 288
>gi|149240693|ref|XP_001526201.1| hypothetical protein LELG_02759 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450324|gb|EDK44580.1| hypothetical protein LELG_02759 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 341
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
GST + + A + +P +P +G I + SP A F+ ++ L S +
Sbjct: 52 FGSTKLSVRISASITKPYEDRPFEGIFVINSEISPMASLKFDTTRSQQQDEVLISRI--- 108
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL +L ++ G+ CW++ D + DG ++D A ALS+ P
Sbjct: 109 -IEKSIRRSNALDLENLCIIAGEQCWEITADLNFWNYDGGMIDIGCFATMLALSHFKKPD 167
Query: 121 VHVA 124
V +
Sbjct: 168 VSIT 171
>gi|412987809|emb|CCO19205.1| unknown protein [Bathycoccus prasinos]
Length = 417
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 86 WDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDE 131
W L +D LV+S DGN LDAL A K AL + +P V V +E
Sbjct: 219 WKLRMDFLVLSDDGNALDALAIAGKCALFDARLPRVRVKRRGEDEE 264
>gi|163311555|gb|ABY26732.1| Rrp45p [Pichia kudriavzevii]
gi|163311560|gb|ABY26736.1| Rrp45p [Pichia kudriavzevii]
gi|163311565|gb|ABY26740.1| Rrp45p [Pichia kudriavzevii]
Length = 410
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 71 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASD 130
+DL SL ++ G+ CW + D ++ DGNL+DA A+ AL + P V +
Sbjct: 181 ALDLESLCIIAGQKCWAVRADVRFLNYDGNLVDAASIAVITALLHFRKPDVELVGSGEGT 240
Query: 131 EQPEVDISDEEFLQFDTSGVPVITTL 156
E D E + +P+ T
Sbjct: 241 ELIIYDEKQREMVPLSILHIPICVTF 266
>gi|388851534|emb|CCF54724.1| probable RRP45-Exosome complex exonuclease [Ustilago hordei]
Length = 322
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 22/165 (13%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGG-EELSAELSSALQHCLL 62
T V SV+A L P + +P +G + I D SP A ++ GG SA L L+
Sbjct: 56 TRVSTSVRANLFPPRSDRPYEGFLQITTDISPMAGVEYDSTGGGANSSARAKEVLFDRLI 115
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVH 122
+D +L VV G+ W++++ +LL GAA+ AA+ + + H
Sbjct: 116 EKAIRRTEAVDREALCVVAGEQVWNVHL-------TVHLLSDTGAALDAAVLCSMLSLRH 168
Query: 123 VAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHN 167
+P+ I + ++ +S +VP PL +H+
Sbjct: 169 F-------RRPDYSIENGNQVRLYSSD-------ERVPIPLAIHH 199
>gi|403214419|emb|CCK68920.1| hypothetical protein KNAG_0B04860 [Kazachstania naganishii CBS
8797]
Length = 307
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V + E+ P +P +G I + +P A FE G E ++ ++
Sbjct: 51 LGGTKVHCRISCEVTLPYEDRPFEGLFLISTEFTPMAGGQFENGNSTGEDEVLIARIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ AAL + P
Sbjct: 111 AV--RRSGA---LDVEGLCIVAGSKCWAIRADVHFLDCDGGFIDASCIAVMAALMHFKKP 165
Query: 120 SVHV 123
+ V
Sbjct: 166 DITV 169
>gi|298713749|emb|CBJ33722.1| 3'-5'-exoribonuclease/ RNA binding [Ectocarpus siliculosus]
Length = 174
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V E+ P +P +G + V+ P A + GE+ ++ LS +
Sbjct: 55 LGRTRVLGVVTGEVVPPFPDRPTEGFLHFNVELGPMAAASV----GEQRNSPLSVEIARV 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ G + A +D +L ++ G+ W L D ++ GNL+DA A AAL + P
Sbjct: 111 IEIGVRDSQA-LDTEALCIIGGEKVWQLRCDVHILDHGGNLIDACTLATMAALRHFRRP 168
>gi|440792691|gb|ELR13899.1| 3' exoribonuclease family, domain 1 domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 524
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 12/158 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE--GRGGEELSAELSSALQ 58
+G T V V+ E+ P A +P +G + SP A +FE R EE + E+ ++
Sbjct: 57 LGQTRVYVVVRCEVVEPYADRPTEGFFIFNTEFSPMASASFEVGARVSEE-AVEVGRLIE 115
Query: 59 HCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGI 118
L ++ ID +L + G+ W + ID V+ GNL+DA A +AL +
Sbjct: 116 RSLRDSRA-----IDTEALCIRAGEKVWAVQIDVHVLDDGGNLIDAASIATVSALLHFRR 170
Query: 119 PSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
P V + +A + ++D E + +P+ T
Sbjct: 171 PDVSITGDAITVH----SVADREPVPLSIHHLPLCVTF 204
>gi|336464418|gb|EGO52658.1| hypothetical protein NEUTE1DRAFT_72508 [Neurospora tetrasperma FGSC
2508]
Length = 357
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDI---SD 139
K W LYID L +S DGN DA A+ AAL +T +P +A D E + S+
Sbjct: 199 KAYWVLYIDLLFVSFDGNPFDAAWTAVMAALRDTKLP------QARWDPDREAVVCSRSE 252
Query: 140 EEFLQFDTSGVPVITTLT 157
E + G+PV T T
Sbjct: 253 EAKMALGVRGLPVACTAT 270
>gi|218664806|gb|ACK99565.1| Rrp45p [Pichia kudriavzevii]
gi|218664811|gb|ACK99569.1| Rrp45p [Pichia kudriavzevii]
gi|218664815|gb|ACK99572.1| Rrp45p [Pichia kudriavzevii]
gi|218664819|gb|ACK99575.1| Rrp45p [Pichia kudriavzevii]
gi|218664823|gb|ACK99578.1| Rrp45p [Pichia kudriavzevii]
gi|218664827|gb|ACK99581.1| Rrp45p [Pichia kudriavzevii]
gi|218664831|gb|ACK99584.1| Rrp45p [Pichia kudriavzevii]
gi|218664835|gb|ACK99587.1| Rrp45p [Pichia kudriavzevii]
gi|218664839|gb|ACK99590.1| Rrp45p [Pichia kudriavzevii]
gi|218664843|gb|ACK99593.1| Rrp45p [Pichia kudriavzevii]
Length = 353
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 71 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASD 130
+DL SL ++ G+ CW + D ++ DGNL+DA A+ AL + P V +
Sbjct: 124 ALDLESLCIIAGQKCWAVRADVRFLNYDGNLVDAASIAVITALLHFRKPDVELVGSGEGT 183
Query: 131 EQPEVDISDEEFLQFDTSGVPVITTL 156
E D E + +P+ T
Sbjct: 184 ELIIYDEKQREMVPLSILHIPICVTF 209
>gi|163311573|gb|ABY26746.1| Rrp45p, partial [Pichia kudriavzevii]
Length = 353
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 71 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASD 130
+DL SL ++ G+ CW + D ++ DGNL+DA A+ AL + P V +
Sbjct: 124 ALDLESLCIIAGQKCWAVRADVRFLNYDGNLVDAASIAVITALLHFRKPDVELVGSGEGT 183
Query: 131 EQPEVDISDEEFLQFDTSGVPVITTL 156
E D E + +P+ T
Sbjct: 184 ELIIYDEKQREMVPLSILHIPICVTF 209
>gi|289740849|gb|ADD19172.1| exosomal 3'-5' exoribonuclease complex subunit Rrp45 [Glossina
morsitans morsitans]
Length = 320
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 27/127 (21%)
Query: 41 FEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGN 100
FE EL+ +++ L+ ++ IDL SL V+ + W L +D V++ +GN
Sbjct: 6 FEAGRNCELTVQINRTLERTFKDSRA-----IDLESLCVISDERVWMLRVDLNVLNHEGN 60
Query: 101 LLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVP 160
L+D A AL++ P V V I DE + + T+ K P
Sbjct: 61 LIDCCSVATLCALAHFRRPDVSV-------------IEDE---------IRIHTSAEKEP 98
Query: 161 FPLIVHN 167
+++H+
Sbjct: 99 LKMVMHH 105
>gi|443895452|dbj|GAC72798.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp45 [Pseudozyma
antarctica T-34]
Length = 321
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 22/165 (13%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGG-EELSAELSSALQHCLL 62
T V SV+A L P + +P +G + I D SP A ++ GG SA L L+
Sbjct: 56 TRVSTSVRATLMPPRSDRPYEGFLQITTDISPMAGVEYDSTGGGANSSARAREVLFDRLI 115
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVH 122
+D +L VV G+ W++++ +LL GAA+ AA+ ++ + H
Sbjct: 116 EKAVRRTEAVDREALCVVAGEQVWNVHL-------TVHLLSDTGAALDAAVLSSMLSLRH 168
Query: 123 VAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHN 167
+P+ I + ++ ++ +VP PL +H+
Sbjct: 169 F-------RRPDYSIENGNQVRLYSAD-------ERVPVPLAIHH 199
>gi|71413321|ref|XP_808804.1| exosome-associated protein 2 [Trypanosoma cruzi strain CL Brener]
gi|70873085|gb|EAN86953.1| exosome-associated protein 2, putative [Trypanosoma cruzi]
Length = 278
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 20/147 (13%)
Query: 10 VKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAG 69
V G P P++G++ + V P F G ++ L + +S
Sbjct: 73 VTGVFGPPPPQHPEEGRLTVEV-----TAPFFPGYSAFQIEGTLHELARFV----RSTII 123
Query: 70 AGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAAS 129
+ +DL+ L V+ G+ CW L ++ +V+++DG L A A AAL N +P +
Sbjct: 124 SCLDLTELCVISGEACWVLRVELIVMNADGGLRAATLHAAVAALHNLTLPKARL------ 177
Query: 130 DEQPEVDISDEEFLQFDTSGVPVITTL 156
P D+ + L F +PV T+
Sbjct: 178 ---PSGDVVESRCLCFHR--IPVAATI 199
>gi|341880027|gb|EGT35962.1| hypothetical protein CAEBREN_20075 [Caenorhabditis brenneri]
Length = 283
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 86 WDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV---HVAAEAASDEQPEVDI 137
W L+I V+ +GNLLDA+ AI+AAL++T +PS+ H + ++ E+ ++ +
Sbjct: 152 WQLFITVNVLCLEGNLLDAVVCAIRAALADTKLPSIVLNHSEGDESAIEKSQIQV 206
>gi|239610182|gb|EEQ87169.1| 3' exoribonuclease [Ajellomyces dermatitidis ER-3]
Length = 435
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
E K W LYID L+IS GN+ DA A+ AAL +T +P
Sbjct: 247 ETKAFWTLYIDILIISHAGNVFDAAWGAMIAALRDTRLPK 286
>gi|217070614|gb|ACJ83667.1| unknown [Medicago truncatula]
Length = 36
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 102 LDALGAAIKAALSNTGIPSVHVAAEAASDEQ 132
++ LGAAIK ALSNTGIP V +AA A+SD+
Sbjct: 4 VNTLGAAIKVALSNTGIPKVQIAAGASSDDN 34
>gi|407848156|gb|EKG03619.1| exosome-associated protein 2, putative,3' exoribonuclease, putative
[Trypanosoma cruzi]
Length = 278
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 20/147 (13%)
Query: 10 VKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAG 69
V G P P++G++ + V P F G ++ L + +S
Sbjct: 73 VTGVFGPPPPKHPEEGRLTVEV-----TAPFFPGYSAFQIEGTLHELARFV----RSTII 123
Query: 70 AGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAAS 129
+ +DL+ L V+ G+ CW L ++ +V+++DG L A A AAL N +P +
Sbjct: 124 SCLDLTELCVISGEACWVLRVELIVMNADGGLRAATLHAAVAALHNLTLPKARL------ 177
Query: 130 DEQPEVDISDEEFLQFDTSGVPVITTL 156
P D+ + + L F +PV T+
Sbjct: 178 ---PSGDVVESKCLCFHR--IPVAATI 199
>gi|358057917|dbj|GAA96162.1| hypothetical protein E5Q_02823 [Mixia osmundae IAM 14324]
Length = 292
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Query: 29 IFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGG--KSGAGAGIDLSSLVVVEGKVCW 86
I VDCSP A + L + +++AL+ G K L+++ GK W
Sbjct: 33 IDVDCSPMALQALDHDPTGGLVSFIATALKSHFFGASPKKSTTRRRVRDQLIILPGKRRW 92
Query: 87 DLYIDGLVI-SSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVD 136
L ID +V+ +S GNL D A++AAL + IP A +P D
Sbjct: 93 SLAIDVIVLGASGGNLYDVAFMAVRAALWDLRIPRTRSTALLNQRRKPGED 143
>gi|299750147|ref|XP_001836568.2| cytidylyltransferase [Coprinopsis cinerea okayama7#130]
gi|298408765|gb|EAU85276.2| cytidylyltransferase [Coprinopsis cinerea okayama7#130]
Length = 646
Score = 41.6 bits (96), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 69 GAGID--LSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
G G+D +L +V G+ W +++D +V++ GN+LD L A +AA+ +T +P V
Sbjct: 413 GEGVDGGRVNLTIVPGRKAWCMHLDLVVLADQGNVLDVLFLAARAAVWDTRVPRTKV 469
>gi|327355316|gb|EGE84173.1| 3' exoribonuclease [Ajellomyces dermatitidis ATCC 18188]
Length = 436
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
E K W LYID L+IS GN+ DA A+ AAL +T +P
Sbjct: 247 ETKAFWTLYIDILIISHAGNVFDAAWGAMIAALRDTRLPK 286
>gi|443898173|dbj|GAC75510.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp43 [Pseudozyma
antarctica T-34]
Length = 318
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T IA+VKAE+ P + +G + V+ F+ G G E A++ ++
Sbjct: 75 IGNTSCIAAVKAEIASPQLSRSRQGYLIPNVELPAVCSSKFKAGAPGPE--AQVLTSRLL 132
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
LL + +D L + EG+ W LY+D I DGN LDA A AALSNT +P
Sbjct: 133 ALLNSSNV----LDRDQLCIQEGQAVWCLYLDISFICFDGNALDAAALATVAALSNTTLP 188
Query: 120 S 120
+
Sbjct: 189 N 189
>gi|321453468|gb|EFX64701.1| hypothetical protein DAPPUDRAFT_333937 [Daphnia pulex]
gi|321470622|gb|EFX81597.1| hypothetical protein DAPPUDRAFT_317213 [Daphnia pulex]
Length = 104
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGG 46
+ ++D++ VK EL P +P +G++ FVD S A P F+G GG
Sbjct: 59 LANSDILVGVKIELASPLHDKPQEGRLEFFVDGSANATPAFQGIGG 104
>gi|67609743|ref|XP_667059.1| polymyositis/scleroderma autoantigen 1 [Cryptosporidium hominis
TU502]
gi|54658150|gb|EAL36827.1| polymyositis/scleroderma autoantigen 1 [Cryptosporidium hominis]
Length = 408
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSP-TAEPTFEG--RGGEELSAELSSAL 57
+G T V++ VK+EL PS + +G ++ VD P + PT L E+++ +
Sbjct: 41 IGRTHVLSVVKSELVAPSQERSSEGFISFTVDIGPLSINPTSHAFRHNRTTLGTEIANYI 100
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
+ L ++GA ID L ++ G W + + V+ DGNL DA A + L +
Sbjct: 101 ERTL--KETGA---IDTEILCILSGVCVWSVKCEIHVLFDDGNLFDACLMATLSGLKHYR 155
Query: 118 IPSVHV 123
+ V
Sbjct: 156 YNEIDV 161
>gi|303286137|ref|XP_003062358.1| 3' exoribonuclease [Micromonas pusilla CCMP1545]
gi|226455875|gb|EEH53177.1| 3' exoribonuclease [Micromonas pusilla CCMP1545]
Length = 301
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G T +A+ K E P PD G V + V+ C+ +A P GR EE S +
Sbjct: 54 IGRTTALAAAKLEPAPPEPTAPDVGVVEVTVELPPMCAASARP---GRPTEE-SQRCARR 109
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ L +DL L + G W + +D V+ DG +LDA A+ AL +
Sbjct: 110 IEDVLRDANV-----VDLRKLCIKRGVYAWRVCVDVYVLDHDGGILDAALCAVVGALKDA 164
Query: 117 GIPSVHV 123
+P V V
Sbjct: 165 KVPRVDV 171
>gi|66362890|ref|XP_628411.1| RRP45-like archaeo-eukaryotic exosomal rnase, PH domain
[Cryptosporidium parvum Iowa II]
gi|46229803|gb|EAK90621.1| RRP45-like archaeo-eukaryotic exosomal rnase, PH domain
[Cryptosporidium parvum Iowa II]
Length = 432
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSP-TAEPTFEG--RGGEELSAELSSAL 57
+G T V++ VK+EL PS + +G ++ VD P + PT L E+++ +
Sbjct: 65 IGRTHVLSVVKSELVAPSQERSSEGFISFTVDIGPLSINPTSHAFRHNRTTLGTEIANYI 124
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
+ L ++GA ID L ++ G W + + V+ DGNL DA A + L +
Sbjct: 125 ERIL--KETGA---IDTEILCILSGVCVWSVKCEIHVLFDDGNLFDACLMATLSGLKHYR 179
Query: 118 IPSVHV 123
+ V
Sbjct: 180 YNEIDV 185
>gi|323509319|dbj|BAJ77552.1| cgd7_2380 [Cryptosporidium parvum]
Length = 408
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSP-TAEPTFEG--RGGEELSAELSSAL 57
+G T V++ VK+EL PS + +G ++ VD P + PT L E+++ +
Sbjct: 41 IGRTHVLSVVKSELVAPSQERSSEGFISFTVDIGPLSINPTSHAFRHNRTTLGTEIANYI 100
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
+ L ++GA ID L ++ G W + + V+ DGNL DA A + L +
Sbjct: 101 ERIL--KETGA---IDTEILCILSGVCVWSVKCEIHVLFDDGNLFDACLMATLSGLKHYR 155
Query: 118 IPSVHV 123
+ V
Sbjct: 156 YNEIDV 161
>gi|350296507|gb|EGZ77484.1| ribosomal protein S5 domain 2-like protein [Neurospora tetrasperma
FGSC 2509]
Length = 357
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVH 122
E K W LYID L +S DGN DA A+ AAL +T +P
Sbjct: 197 ELKAYWVLYIDLLFVSFDGNPFDAAWTAVMAALRDTKLPQAR 238
>gi|71663570|ref|XP_818776.1| exosome-associated protein 2 [Trypanosoma cruzi strain CL Brener]
gi|70884046|gb|EAN96925.1| exosome-associated protein 2, putative [Trypanosoma cruzi]
Length = 278
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 20/147 (13%)
Query: 10 VKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAG 69
V G P P++G++ + V P F G ++ L + +S
Sbjct: 73 VTGVFGPPPPQHPEEGRLTVEV-----TAPFFPGYSAFQIEGTLHELARFV----RSTII 123
Query: 70 AGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAAS 129
+ +DL+ L V+ G+ CW L ++ +++++DG L A A AAL N +P +
Sbjct: 124 SCLDLTELCVISGEACWVLRVELILMNADGGLRAATLHAAVAALHNLTLPKARL------ 177
Query: 130 DEQPEVDISDEEFLQFDTSGVPVITTL 156
P D+ + L F +PV T+
Sbjct: 178 ---PSGDVVESRCLCFHR--IPVAATI 199
>gi|444317268|ref|XP_004179291.1| hypothetical protein TBLA_0B09550 [Tetrapisispora blattae CBS 6284]
gi|387512331|emb|CCH59772.1| hypothetical protein TBLA_0B09550 [Tetrapisispora blattae CBS 6284]
Length = 267
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 18/146 (12%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
++ I S+K+++ + +QPD V + +D S R + +SS L+
Sbjct: 56 SECIVSIKSKVIDHTVLQPDDSLVEVTLDIS-------GQRDDSPMVESISSLLREVY-- 106
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS-VH 122
ID SL + K + LYID LVIS+ N + + AI +AL++T +P V
Sbjct: 107 -----SKTIDKKSLTLT-TKYSFKLYIDVLVISTYSNPISLISMAIFSALNSTYLPKLVS 160
Query: 123 VAAEAASDEQPEVDISDEEFLQFDTS 148
+ +E P D + ++FD +
Sbjct: 161 SFDDIEVEELPT--FHDYDMIKFDVN 184
>gi|296823694|ref|XP_002850484.1| 3' exoribonuclease family protein [Arthroderma otae CBS 113480]
gi|238838038|gb|EEQ27700.1| 3' exoribonuclease family protein [Arthroderma otae CBS 113480]
Length = 415
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEA----ASDEQPEVD 136
E K W LYID L++S GN D AAI AAL NT +P E SD
Sbjct: 232 EVKAFWTLYIDILMVSLAGNPFDVAWAAIVAALRNTKLPKAWWDTETERVLCSDR----- 286
Query: 137 ISDEEFLQFDTSGVPVITTL 156
+SD LQ G+P+ ++
Sbjct: 287 VSDASSLQL--RGMPISSSF 304
>gi|449544735|gb|EMD35707.1| hypothetical protein CERSUDRAFT_115670 [Ceriporiopsis subvermispora
B]
Length = 283
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A V A++ +P +P +G + I + SP A +E GR +E ++ L
Sbjct: 51 LGKTRVLAQVDAKMVKPLPERPLEGIITIHSEISPMASSDYEPGRPSDE-EVTITRMLDK 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
L +D SL ++ G+ W L + ++ GN+LD
Sbjct: 110 VLRRSDV-----VDKESLCILAGQRVWHLRLTIHCLADAGNMLD 148
>gi|326482450|gb|EGE06460.1| 3' exoribonuclease [Trichophyton equinum CBS 127.97]
Length = 415
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
E K W LYID L++S GN D AAI AAL NT +P
Sbjct: 232 EVKAFWTLYIDVLMVSLAGNPFDVAWAAIVAALKNTKLP 270
>gi|326474396|gb|EGD98405.1| 3' exoribonuclease [Trichophyton tonsurans CBS 112818]
Length = 415
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
E K W LYID L++S GN D AAI AAL NT +P
Sbjct: 232 EVKAFWTLYIDVLMVSLAGNPFDVAWAAIVAALKNTKLP 270
>gi|179287|gb|AAA58384.1| autoantigen [Homo sapiens]
gi|63992811|gb|AAY40968.1| unknown [Homo sapiens]
Length = 355
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 37 AEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVIS 96
A P FE +L +L+ ++ CL K ID SL VV G+ W + +D +++
Sbjct: 2 AAPAFEPGRQSDLLVKLNRLMERCLRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLN 56
Query: 97 SDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPE 134
DGN++DA A AL + P V V + + PE
Sbjct: 57 HDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE 94
>gi|497643|gb|AAA18832.1| PM-Scl-75 autoantigen [Homo sapiens]
Length = 372
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 37 AEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVIS 96
A P FE +L +L+ ++ CL K ID SL VV G+ W + +D +++
Sbjct: 2 AAPAFEPGRQSDLLVKLNRLMERCLRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLN 56
Query: 97 SDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPE 134
DGN++DA A AL + P V V + + PE
Sbjct: 57 HDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE 94
>gi|344302579|gb|EGW32853.1| hypothetical protein SPAPADRAFT_136976 [Spathaspora passalidarum
NRRL Y-27907]
Length = 304
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHC 60
G T + V A + P +P +G I + S A F+ R EE+ L
Sbjct: 53 GKTKLACRVTATVTTPYEDRPFEGIFTINSEISTMASMRFDTSRSNEEI-------LIAR 105
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
++ +DL SL ++ G+ W++ +D ++ DGN +D A+ AL + P
Sbjct: 106 IIEKAVRRSNSLDLESLCIIAGEKVWEITVDLNYLNYDGNFIDVGCFAVMLALHHFKKPD 165
Query: 121 VHV 123
+ +
Sbjct: 166 ISI 168
>gi|348678132|gb|EGZ17949.1| hypothetical protein PHYSODRAFT_502345 [Phytophthora sojae]
Length = 517
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEEL-------SAEL 53
+G T VI +V E+ P +P +G + V+ SP A P+FE +AEL
Sbjct: 58 LGRTRVIGNVHGEIVPPFPDRPTEGFLHFAVELSPMASPSFEAAASAGRGAASSVAAAEL 117
Query: 54 SSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
+ ++ + ++ +D +L VV G+ W + V+ GNL+DA A AAL
Sbjct: 118 ARLVERGVRESRA-----LDTEALAVVAGEKVWAITCHVHVVDHGGNLVDAASLAAIAAL 172
Query: 114 SNTGIPSVHV 123
+ P V V
Sbjct: 173 MHYRRPEVAV 182
>gi|261192783|ref|XP_002622798.1| 3' exoribonuclease [Ajellomyces dermatitidis SLH14081]
gi|239589280|gb|EEQ71923.1| 3' exoribonuclease [Ajellomyces dermatitidis SLH14081]
Length = 436
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
E K W LYID L+IS GN+ DA ++ AAL +T +P
Sbjct: 247 ETKAFWTLYIDILIISHAGNVFDAAWGSMIAALRDTRLPK 286
>gi|428181405|gb|EKX50269.1| hypothetical protein GUITHDRAFT_104084 [Guillardia theta CCMP2712]
Length = 498
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 84 VCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDE-QPEVDISDEEF 142
+ W L++ ++ +DGNLLDA A++AAL +T P + + D E+D +
Sbjct: 104 MSWLLHVKVHLLEADGNLLDASVMAVRAALRSTWFPRMIFKQDGPEDRISVEMDDDRSTY 163
Query: 143 LQFDTSGVPVITTLTKV 159
+ D+ P+ +L ++
Sbjct: 164 WRLDSINCPLTVSLYRL 180
>gi|398398730|ref|XP_003852822.1| hypothetical protein MYCGRDRAFT_57534 [Zymoseptoria tritici IPO323]
gi|339472704|gb|EGP87798.1| hypothetical protein MYCGRDRAFT_57534 [Zymoseptoria tritici IPO323]
Length = 331
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
K W LYID LV++ DGN DA A+ AAL +T +P
Sbjct: 176 KAYWALYIDILVLALDGNAFDAAWIAVMAALQDTTLP 212
>gi|357613811|gb|EHJ68730.1| putative exosome component 8 [Danaus plexippus]
Length = 139
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 13 ELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGI 72
EL +P A +PD G + V+ P F + + +S+ + + K I
Sbjct: 17 ELAKPKAEEPDVGFLITNVELLPLCSSKFRPGPPSDHAQVVSNVVSDIVTNSKC-----I 71
Query: 73 DLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
D+ L +V K+ W LY D + + DG+++DA + ++L
Sbjct: 72 DMKDLCIVPDKLSWVLYCDMVCLDYDGSVVDACLITLMSSL 112
>gi|62733253|gb|AAX95370.1| 3' exoribonuclease family, domain 1, putative [Oryza sativa
Japonica Group]
Length = 185
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++AS+K E+ PS PD+G +A+ P P E++ +S L+
Sbjct: 70 LGDTAMLASIKLEVMSPSGEAPDEGSIAVEFHMPPICSPLVRPGRPAEVAPVISKNLEDI 129
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYI 90
L+ SG ++L L ++ GK W Y+
Sbjct: 130 LMS--SGM---LNLKELCLISGKASWLAYL 154
>gi|328850724|gb|EGF99885.1| hypothetical protein MELLADRAFT_68277 [Melampsora larici-populina
98AG31]
Length = 252
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 25 GKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKV 84
KV VDC P T + L+S G+ + +SS
Sbjct: 72 AKVECTVDCPPATLNTLASDPSPMYTIYLNSIFSPL------GSSKQLKISSTQT----- 120
Query: 85 CWDLYIDGLVIS-SDGNLLDALGAAIKAALSNTGIPSV-HVAAEAASDEQP-----EVDI 137
W LYID +V+S S GNL+D + A++AALS+ IP + + +P EVDI
Sbjct: 121 -WALYIDVIVLSASAGNLMDVMCLAVRAALSDLKIPKTKELGYQIQKPARPTIDGMEVDI 179
Query: 138 SDEEFLQFDTSGV 150
S ++ D G+
Sbjct: 180 SADKSEGMDDVGI 192
>gi|406862206|gb|EKD15257.1| 3' exoribonuclease family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 344
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAE 126
E K W LYID L IS DGN DA AA+ +AL + +P + A+
Sbjct: 189 EVKAFWVLYIDILFISLDGNPFDAAWAAVVSALKDVRLPKAYWDAD 234
>gi|424819697|ref|ZP_18244764.1| Putative exosome complex RNA-binding protein [Candidatus
Parvarchaeum acidophilus ARMAN-5_'5-way FS']
gi|326422493|gb|EGD71890.1| Putative exosome complex RNA-binding protein [Candidatus
Parvarchaeum acidophilus ARMAN-5_'5-way FS']
Length = 253
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T VIA VK G P +P G + + + S + G ++S+++
Sbjct: 48 LGNTKVIAGVKVLNGTPFPDRPADGALIVNFELSELT-SNYPG-------DRINSSIE-- 97
Query: 61 LLGGKSGAGAG----IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+G + G IDLS L V EGK +Y+D + I+++GNL DA A A+ NT
Sbjct: 98 -VGRVTDRGIRESNLIDLSKLCVEEGKTVLFVYVDIVCINNEGNLFDAGNIAALRAILNT 156
>gi|71004918|ref|XP_757125.1| hypothetical protein UM00978.1 [Ustilago maydis 521]
gi|46096381|gb|EAK81614.1| hypothetical protein UM00978.1 [Ustilago maydis 521]
Length = 327
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGG-EELSAELSSALQHCLL 62
T V V+A L P + +P +G + I D SP A ++ GG SA L L+
Sbjct: 56 TRVSTCVRATLMPPRSDRPYEGFLQITTDISPMAGIEYDSTGGGANSSARAREVLFDRLI 115
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDA 104
+D +L VV G+ W++++ ++S G LDA
Sbjct: 116 DKAVRRTEAVDREALCVVAGEQVWNVHLTVHLLSDTGAALDA 157
>gi|358335737|dbj|GAA29354.2| exosome complex component RRP45 [Clonorchis sinensis]
Length = 474
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A V AE+ P +P +G + + D + P R E LSS LQ
Sbjct: 81 IGATSVVARVSAEVLEPKPSRPSQGMLFVNFDVT-LIHPNAASRHKIEEGRRLSSVLQTL 139
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
L +DL SL +V + + + ++ +S DGNL D
Sbjct: 140 LRDS-------VDLDSLCIVAWERVFAIRVELRALSYDGNLGD 175
>gi|302499567|ref|XP_003011779.1| hypothetical protein ARB_02008 [Arthroderma benhamiae CBS 112371]
gi|291175332|gb|EFE31139.1| hypothetical protein ARB_02008 [Arthroderma benhamiae CBS 112371]
Length = 333
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
E K W LYID L++S GN D AAI AAL NT +P
Sbjct: 150 EVKAFWTLYIDVLMVSLAGNPFDVAWAAIVAALKNTKLP 188
>gi|164657360|ref|XP_001729806.1| hypothetical protein MGL_2792 [Malassezia globosa CBS 7966]
gi|159103700|gb|EDP42592.1| hypothetical protein MGL_2792 [Malassezia globosa CBS 7966]
Length = 313
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
T V ASV A + P+ +P++G + VD S P + EE L+ LQ L
Sbjct: 77 TLVTASVTARIAHPTLERPNEGFLIPSVDLSSLCSPLYNAGPPEEEGQVLTHNLQMFL-- 134
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNL 101
SG + S+L + +G W +Y+D + +S++G++
Sbjct: 135 NNSGI---LPRSALCIEKGLAVWAIYVDVVCVSAEGSV 169
>gi|68074995|ref|XP_679414.1| exosome complex exonuclease [Plasmodium berghei strain ANKA]
gi|56500153|emb|CAI00593.1| exosome complex exonuclease, putative [Plasmodium berghei]
Length = 511
Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats.
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 14/166 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ + +E+ +P +P++G + I +D + +E E+ + ++
Sbjct: 47 IGNTKVVCKITSEIVKPYDKKPNEGIIKINLDVESFNTYNDISKISDE-CLEIKNLIERI 105
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
A ++ SL ++ K W L I+ VI +DGNL D+ + +AL + S
Sbjct: 106 F-----KASNILNFESLCIIPYKKVWCLLINITVIENDGNLYDSCYLSAYSALLHFRNSS 160
Query: 121 VHVAAEAASDEQPEVDISDEE--FLQFDTSGVPVITTLTKVPFPLI 164
V + D V I +EE + P++TT F I
Sbjct: 161 VDI------DNTGNVIIDEEEVNYTSLSVHNSPILTTFAYFNFEEI 200
>gi|84999936|ref|XP_954689.1| exosome complex exonuclease [Theileria annulata]
gi|65305684|emb|CAI74009.1| exosome complex exonuclease, putative [Theileria annulata]
Length = 322
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 12/129 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G+T + V E+ P++ +P++G + V+ S T+E G+ ++ +H
Sbjct: 60 FGNTVIFTCVSQEIVEPNSERPNEGFLFFNVETSFTSECYEPGKTTDQ---------EHN 110
Query: 61 L---LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
L L + +DL +L + GK L + V+ DGNLL A + A+L +
Sbjct: 111 LIYFLENMFKESSCLDLETLCITSGKQVLALRVYVHVLQDDGNLLSACSFSALASLLHYR 170
Query: 118 IPSVHVAAE 126
P + ++ E
Sbjct: 171 KPLMELSDE 179
>gi|449298658|gb|EMC94673.1| hypothetical protein BAUCODRAFT_555446 [Baudoinia compniacensis
UAMH 10762]
Length = 333
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
K W LYID L I+ DGN DA A+ AAL +T +P
Sbjct: 176 KAYWTLYIDILCIAMDGNPFDAAWTAVIAALRDTSLP 212
>gi|430812463|emb|CCJ30112.1| unnamed protein product [Pneumocystis jirovecii]
Length = 307
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 22/160 (13%)
Query: 3 STDVIASVKAELGRPSAMQPDK-----GKVAIFVDCSPTAEPTF-EGRGGEELSAELSSA 56
+T VI S+KAE+ + + GK+++ V+ P TF E E +SA L+ +
Sbjct: 54 NTSVIVSIKAEIINSVDLDILRKCKKGGKISVNVEIFPN---TFHENNDDEAMSAFLTQS 110
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ L +GI L L+V K W ++ID +VIS + + L AL A++ AL T
Sbjct: 111 ILQSL--------SGISLEHLLVTPTK-AWSIFIDAVVISPNNHALPALALAVRLALQTT 161
Query: 117 GIPSV--HVAAEAASDEQPEVDISDEEF-LQFD-TSGVPV 152
+P + H+A + ++ DI +F + +D +GVP+
Sbjct: 162 KLPHIIAHIAPGSIDTDKIAQDIGSGDFEVDYDLKNGVPI 201
>gi|452847222|gb|EME49154.1| hypothetical protein DOTSEDRAFT_142863 [Dothistroma septosporum
NZE10]
Length = 338
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 76 SLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
S VV+ K W LYID L ++ DGN DA AI AAL +T +P
Sbjct: 172 SRVVI--KAFWTLYIDVLCLALDGNAFDAAWLAITAALRDTTLP 213
>gi|413943885|gb|AFW76534.1| hypothetical protein ZEAMMB73_585681 [Zea mays]
Length = 280
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 14/124 (11%)
Query: 37 AEPTFE-GRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVI 95
A+ +FE GR GE + EL + L ++ +D+ L VV GK W + +D ++
Sbjct: 2 ADLSFEPGRPGES-TIELGRVIDRGLRESRA-----VDMEFLCVVAGKHVWSVRVDLHIL 55
Query: 96 SSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEE---FLQFDTSGVPV 152
+ GNL+DA AALS P V D+ +V + D E L +P+
Sbjct: 56 DNGGNLIDAANIVALAALSTFWRPECTVGG----DDGQQVTVHDPEVRDLLPLTIHHMPI 111
Query: 153 ITTL 156
+ T
Sbjct: 112 VVTF 115
>gi|302656627|ref|XP_003020065.1| hypothetical protein TRV_05838 [Trichophyton verrucosum HKI 0517]
gi|291183846|gb|EFE39441.1| hypothetical protein TRV_05838 [Trichophyton verrucosum HKI 0517]
Length = 333
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEA 127
E K W LYID L++S GN D AAI AAL NT +P E+
Sbjct: 150 EVKAFWTLYIDVLMVSLAGNPFDVAWAAIVAALKNTKLPKAWWDLES 196
>gi|68483592|ref|XP_714249.1| potential exosome component Rrp45p [Candida albicans SC5314]
gi|68483865|ref|XP_714111.1| potential exosome component Rrp45p [Candida albicans SC5314]
gi|46435645|gb|EAK95022.1| potential exosome component Rrp45p [Candida albicans SC5314]
gi|46435802|gb|EAK95176.1| potential exosome component Rrp45p [Candida albicans SC5314]
gi|238883782|gb|EEQ47420.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 337
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ ++ + + P +P +G + I +C + + + +
Sbjct: 57 LGKTKVMVNITSRITEPYQDRPFEGIMTI--NCEIPNHIKLQSNDTTNNNNDNEDEFINL 114
Query: 61 L---LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
+ L +DL +L ++ G+ W+L ID V++ DGNL+D+ AI AL +
Sbjct: 115 INRALDRAIRRSNAVDLENLCIIAGEKVWELIIDLQVLNYDGNLIDSGCLAIITALLDFK 174
Query: 118 IPSVHV 123
P V +
Sbjct: 175 KPDVTI 180
>gi|389646935|ref|XP_003721099.1| exosome complex exonuclease RRP43 [Magnaporthe oryzae 70-15]
gi|86196361|gb|EAQ70999.1| hypothetical protein MGCH7_ch7g406 [Magnaporthe oryzae 70-15]
gi|351638491|gb|EHA46356.1| exosome complex exonuclease RRP43 [Magnaporthe oryzae 70-15]
gi|440467025|gb|ELQ36266.1| exosome complex exonuclease RRP43 [Magnaporthe oryzae Y34]
gi|440488969|gb|ELQ68653.1| exosome complex exonuclease RRP43 [Magnaporthe oryzae P131]
Length = 357
Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
E K W L+ID L IS DGN D A+ AAL +T +P+
Sbjct: 202 ETKAFWTLFIDVLFISFDGNPFDVAWTAVLAALRDTKLPA 241
>gi|169865116|ref|XP_001839162.1| hypothetical protein CC1G_12434 [Coprinopsis cinerea okayama7#130]
gi|116499771|gb|EAU82666.1| hypothetical protein CC1G_12434 [Coprinopsis cinerea okayama7#130]
Length = 237
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 56 ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
ALQ+ L + + + L SL + K W +Y+D + I+ DGN DA A+ AL N
Sbjct: 118 ALQNTL--KHNNSANTLPLESLCIQPNKSVWTIYLDAICINYDGNAFDAALMAMVLALKN 175
>gi|67903390|ref|XP_681951.1| hypothetical protein AN8682.2 [Aspergillus nidulans FGSC A4]
gi|40740914|gb|EAA60104.1| hypothetical protein AN8682.2 [Aspergillus nidulans FGSC A4]
Length = 413
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 73 DLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAE 126
D ++L E K W LYID ++IS GN DA A+ AAL +T +P A+
Sbjct: 228 DETTLETREIKAFWVLYIDIMIISLAGNPFDAAWTAVLAALRDTKLPRAWWDAD 281
>gi|401427429|ref|XP_003878198.1| putative exosome-associated protein 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494445|emb|CBZ29747.1| putative exosome-associated protein 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 312
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEG------RGGEELSAELSSAL 57
T + +V+ LG P QP G++ + V+ +P E G R + + A ++ L
Sbjct: 92 TCIQCTVQGLLGPPRPEQPAAGRLNVHVE-APFVEHLSGGAASTNYRSFQYMIASGNADL 150
Query: 58 QHCLLGGKSGA--GAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
L G G DLS L + EG+ CW L + L++S DG L A+ AAL
Sbjct: 151 PLRQLEGHIGTVLDGCFDLSQLSIYEGEACWVLKVSVLLLSFDGGLRAGSLHAVLAALHK 210
Query: 116 TGIPSVHV 123
+P +
Sbjct: 211 LHLPRTRL 218
>gi|150865099|ref|XP_001384176.2| hypothetical protein PICST_59559 [Scheffersomyces stipitis CBS
6054]
gi|149386355|gb|ABN66147.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 307
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 9/125 (7%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G T + V A++G+P +P +G I + S A F+ ++ ++ +
Sbjct: 53 GLTKLAVRVSAQIGKPYEDRPFEGLFQINCEISSMAWAHFDNSKNSNEEILIARIIEKAI 112
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDA--LGAAIKAALSNTGIP 119
S +DL +L ++ G+ W++ +D ++ DGN +D GA + AL + P
Sbjct: 113 RRSNS-----LDLEALCIIAGEKVWNITVDLNFLNFDGNFVDVGCFGAML--ALHHFKKP 165
Query: 120 SVHVA 124
+ +
Sbjct: 166 DISIV 170
>gi|428673125|gb|EKX74038.1| exosome complex exonuclease rrp42, putative [Babesia equi]
Length = 282
Score = 39.7 bits (91), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 72 IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDE 131
ID L ++ K W+L I ++ G+LLDA+ I AL + +PSV V + DE
Sbjct: 106 IDKKILCIMPNKFVWNLKIHTTILQRGGSLLDAISIGIVTALRCSRLPSVAVMLK---DE 162
Query: 132 QPEVDISDEEFLQFDTS-GVPVITTLTK 158
D D++ LQ S G+ IT TK
Sbjct: 163 IESSD--DDKNLQVKLSAGLEYITLYTK 188
>gi|123508639|ref|XP_001329682.1| nucleolar autoantigen-like protein [Trichomonas vaginalis G3]
gi|121912729|gb|EAY17547.1| nucleolar autoantigen-like protein, putative [Trichomonas vaginalis
G3]
Length = 315
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 71 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVH 122
+DL SLV+ GK+ W+L + +++ +DG L +A+ A+ L T +PS
Sbjct: 108 ALDLESLVIQIGKLVWELKCEIVILENDGGLFEAMTLAVGCGLLATKLPSTR 159
>gi|240849627|ref|NP_001155833.1| 3 exoribonuclease-like [Acyrthosiphon pisum]
gi|239791374|dbj|BAH72161.1| ACYPI010191 [Acyrthosiphon pisum]
Length = 400
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V A V E+ +P+ +P++G + I +AE G+ +L+ Q
Sbjct: 50 LGCTRVFAQVSCEIYQPNNSRPNEGVLQI------SAE-----LAGDNKINDLTKINQ-- 96
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L IDL +L ++ + W + +D V++ DGN L A AAL + P
Sbjct: 97 VLERFYKDSKCIDLEALCIIAEEKVWKIKVDLSVLNMDGNTLGCCSIATLAALMHFRYPD 156
Query: 121 V 121
V
Sbjct: 157 V 157
>gi|424819347|ref|ZP_18244456.1| Putative exosome complex RNA-binding protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4_'5-way FS']
gi|326422439|gb|EGD71838.1| Putative exosome complex RNA-binding protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4_'5-way FS']
Length = 156
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 72 IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
IDL+ LV+ EGK +Y+D + ++++GNL DA A A+ NT
Sbjct: 15 IDLTKLVIEEGKTVSFVYVDIVCLNNEGNLFDAANIAALRAILNT 59
>gi|340344305|ref|ZP_08667437.1| 3' exoribonuclease [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519446|gb|EGP93169.1| 3' exoribonuclease [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 272
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS----PTAEPTFE----GRGGEELSAE 52
+G ++VI VK + RP PD G IF+ C+ P + PT E G EL+
Sbjct: 54 LGDSEVICGVKIQPDRPF---PDMGDKGIFI-CTAELLPLSHPTVETGPPGPDVIELARV 109
Query: 53 LSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAA 112
+ ++ + IDL+ LV+ + K ++ D +V+ DGNL DA A AA
Sbjct: 110 VDRGIRESHM---------IDLTQLVIEKNKSVVGVFADNVVVDYDGNLFDACAYAATAA 160
Query: 113 LSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
+ ++ P + + + + + E S +PV T+ K+ +IV
Sbjct: 161 ILSSKTPKWEMKNDVPT-------LVEGEESDVPISTIPVSVTMGKIGNHIIV 206
>gi|402074963|gb|EJT70434.1| exosome complex exonuclease RRP43 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 372
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAE 126
K W LYID L IS DGN D A+ AAL +T +P AE
Sbjct: 207 KAYWVLYIDVLFISFDGNPFDVAWTAVVAALRDTRLPRAVWDAE 250
>gi|440637012|gb|ELR06931.1| hypothetical protein GMDG_02301 [Geomyces destructans 20631-21]
Length = 252
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+A++ L PS +P G + + SP A PT + L+ L
Sbjct: 51 MGKTRVLATISCSLSPPSPPRPFDGIFTLTTEFSPMATPTVDPSRPSPPETLLARLLDKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L A +D SL ++ GK W + D ++S G LLDA A A L + P
Sbjct: 111 L-----RRSAALDTESLCLLAGKSVWAICCDLHILSHGGGLLDACCVAALAGLLHFRRPE 165
Query: 121 VHVAAEAAS 129
V V E +
Sbjct: 166 VSVEGEKVT 174
>gi|310797863|gb|EFQ32756.1| exosome complex exonuclease RRP43 [Glomerella graminicola M1.001]
Length = 339
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 21/34 (61%)
Query: 86 WDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
W LYID +S DGN D AAI AAL +T IP
Sbjct: 191 WVLYIDIFFVSFDGNPFDVAWAAILAALRDTTIP 224
>gi|429852255|gb|ELA27400.1| 3 exoribonuclease family protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 315
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 86 WDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
W LYID IS DGN DA A++ AAL +T IP
Sbjct: 167 WVLYIDIFFISLDGNPFDAAWASVLAALRDTTIP 200
>gi|156096300|ref|XP_001614184.1| exosome complex exonuclease [Plasmodium vivax Sal-1]
gi|148803058|gb|EDL44457.1| exosome complex exonuclease, putative [Plasmodium vivax]
Length = 281
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
+VI +K L PS PD+G + + +DC + R ++ +SS + L
Sbjct: 49 NNVICGIKLSLLTPSLDAPDEGVINLQIDCPASV---VANRIKKDHLQIMSSIIYDLCLK 105
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
ID + ++ W + I+ +V+++ G LLD + AI AL +T
Sbjct: 106 N------NIDRKKMCILPSTFVWGVDINVMVLNAGGGLLDIISMAIYVALKDT 152
>gi|255725482|ref|XP_002547670.1| hypothetical protein CTRG_01977 [Candida tropicalis MYA-3404]
gi|240135561|gb|EER35115.1| hypothetical protein CTRG_01977 [Candida tropicalis MYA-3404]
Length = 299
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIF-VDCSPTAEPTFEGRGGEELSAELSSALQHC 60
GST +I ++ A + P +P +G IF ++C E E L LS L+
Sbjct: 51 GSTKLIVNISARIIEPYKDRPFEG---IFTINCELPNNLKSEEIIDENL---LSRTLEKS 104
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
+ S +DL +L ++ G+ W++ ID ++ DGNL+D+ AI L
Sbjct: 105 IRRSNS-----LDLENLCIIAGEKVWEIIIDLNYLNYDGNLIDSGCLAIMIGL 152
>gi|315055833|ref|XP_003177291.1| 3' exoribonuclease [Arthroderma gypseum CBS 118893]
gi|311339137|gb|EFQ98339.1| 3' exoribonuclease [Arthroderma gypseum CBS 118893]
Length = 415
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
E K W LYID L++S GN D A+ AAL NT +P
Sbjct: 232 EVKAFWTLYIDVLMVSLAGNPFDVAWTAVVAALRNTKLP 270
>gi|326489127|dbj|BAK01547.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 235
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 19/98 (19%)
Query: 71 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASD 130
+D+ SL VV GK W L +D ++ + GNL+DA A AALS P V D
Sbjct: 20 AVDMESLCVVAGKHVWSLRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGG----D 75
Query: 131 EQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIVHNL 168
+ +V + D E + P PL +H+L
Sbjct: 76 DGQQVTVHDPEVMD---------------PLPLTIHHL 98
>gi|388856078|emb|CCF50258.1| related to Exosome complex exonuclease RRP43 [Ustilago hordei]
Length = 339
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G T IA++KAE+ P +P+ G + V+ CS +P G + L++ L +
Sbjct: 94 IGKTSCIAAIKAEVAPPQLSRPNDGYLIPNVELPAVCSSKFKPGAPGEEAQVLTSRLLAL 153
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ +D L + K W LY+D I DGN +DA A AALS+T
Sbjct: 154 ---------LNSSNLLDREQLRIESAKAVWCLYLDISFICFDGNAMDAAVLAAVAALSDT 204
Query: 117 GI 118
+
Sbjct: 205 KL 206
>gi|194694796|gb|ACF81482.1| unknown [Zea mays]
gi|414869689|tpg|DAA48246.1| TPA: hypothetical protein ZEAMMB73_220271 [Zea mays]
Length = 218
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 33 CSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDG 92
CSP P GR + ++ +S AL+ L + ++L L ++ GK W Y+D
Sbjct: 18 CSPLVRP---GRPTD-VAPVISKALEDVL-----TSSGMLNLKDLCLITGKASWLAYLDI 68
Query: 93 LVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
+++DG+L DA + AA ++ IP V V
Sbjct: 69 YCLNADGSLFDAALISAVAAFTHLEIPLVSV 99
>gi|156101467|ref|XP_001616427.1| exosome complex exonuclease [Plasmodium vivax Sal-1]
gi|148805301|gb|EDL46700.1| exosome complex exonuclease, putative [Plasmodium vivax]
Length = 518
Score = 38.5 bits (88), Expect = 0.95, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI + +E+ +P +P++G + + +D + +E E+ + ++
Sbjct: 47 IGHTKVICKITSEIVKPFDKRPNEGIIKVNLDIDSFTNVNDNSQISDE-CLEIKNLIERI 105
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDA 104
L ++L SL ++ K W L ++ +VI +DGNL D+
Sbjct: 106 LKSSNL-----LNLESLCIIPHKKVWCLLVNIIVIENDGNLYDS 144
>gi|225713980|gb|ACO12836.1| Exosome complex exonuclease RRP45 [Lepeophtheirus salmonis]
Length = 363
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+AS +G P + +P++G + I + EP + E EL+ ++
Sbjct: 47 LGETRVLASTSCSVGEPQSSRPNEGVLKIRM------EPLAKRSMTTEALVELNRVIERV 100
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K +D+ SL + + W + ++ +++ GN D A AAL + P
Sbjct: 101 LKQSKC-----LDMESLCISSEEKVWIISLEMTILNDAGNAADCASVAGLAALCHFKRPD 155
Query: 121 V 121
V
Sbjct: 156 V 156
>gi|225718348|gb|ACO15020.1| Exosome complex exonuclease RRP45 [Caligus clemensi]
Length = 366
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+AS +G P +++P++G + + EP + E EL+ ++
Sbjct: 47 LGDTRVLASTSCSVGEPRSVRPNEGILKTHI------EPLSKRSMTTEALVELNRVIERV 100
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K +D+ SL + + W + ++ ++S GN D A AAL + P
Sbjct: 101 LKESKC-----VDMESLCISSEEKVWIISLEMTLLSDAGNAADCASIAGLAALCHFKRPD 155
Query: 121 V 121
V
Sbjct: 156 V 156
>gi|115386760|ref|XP_001209921.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114190919|gb|EAU32619.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 412
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
E K W LYID ++IS GN DA A++ AAL +T +P
Sbjct: 233 EIKAFWVLYIDVMIISLAGNPFDAAWASVLAALKDTKLP 271
>gi|268530568|ref|XP_002630410.1| C. briggsae CBR-EXOS-8 protein [Caenorhabditis briggsae]
Length = 361
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 86 WDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
W L+I V+S +G+LLDA+ AI AAL++T +PS+
Sbjct: 212 WQLHITIKVLSLEGSLLDAVVCAIGAALADTKLPSI 247
>gi|154343557|ref|XP_001567724.1| putative exosome-associated protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065056|emb|CAM43169.1| putative exosome-associated protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 312
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEG------RGGEELSAELSSAL 57
T + +V+ LG P QP G++ + V+ +P AE G R + + S+ L
Sbjct: 92 TCIQCTVQGLLGPPFPDQPAAGRLNVRVE-APFAEHLSGGAASSNYRSFQYMVTSGSTDL 150
Query: 58 -QHCLLGGKSGAGAG-IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
Q L G S G DLS L + EG+ CW L ++ L++S DG L A AAL
Sbjct: 151 PQRQLEGYISTVLDGCFDLSQLSIYEGEACWVLNVNVLLLSFDGGLRAGSLHAALAALHK 210
Query: 116 TGIPSVHV 123
+P +
Sbjct: 211 LHLPRTRL 218
>gi|255950938|ref|XP_002566236.1| Pc22g23450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593253|emb|CAP99633.1| Pc22g23450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 387
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 67 GAGAGIDL----SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVH 122
AG G+D+ S E K W LYID ++IS GN DA A++ AAL +T +P
Sbjct: 198 NAGEGMDVDTEQSEGSEREIKAFWVLYIDVMIISLAGNPFDAAWASVLAALRDTKLPKAW 257
Query: 123 VAAE 126
A+
Sbjct: 258 WDAD 261
>gi|157869515|ref|XP_001683309.1| putative exosome complex exonuclease RRP45 [Leishmania major strain
Friedlin]
gi|68224193|emb|CAJ04881.1| putative exosome complex exonuclease RRP45 [Leishmania major strain
Friedlin]
Length = 363
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFV-DCSPTAEPTFEGRGGEELSAELSSALQHC 60
G+T A++ +L PS +P G + +P + + + +S L+ L
Sbjct: 60 GNTVATATISCDLVEPSPYRPKHGFFEVHARQLLNERDPLDQSKEIKRISMYLTRLL--- 116
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+G+ ++ SL V+ G+ W + + +++++DGN D A+ AL + P
Sbjct: 117 -------SGSVLETESLCVIPGRRVWSIDAEVIIVNNDGNAQDVAQWAVMTALQHVRRPE 169
Query: 121 VHVAAE 126
+ + E
Sbjct: 170 LTIRGE 175
>gi|440298206|gb|ELP90846.1| exosome complex exonuclease RRP45, putative [Entamoeba invadens
IP1]
Length = 263
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 27/146 (18%)
Query: 23 DKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEG 82
D G + V+ A P F G E+ ++ LL ++ ID+ LV+V G
Sbjct: 60 DSGIFHVNVNFLQMANPDFLDAKGPRDLIEIGRVVERALLSTRA-----IDIDGLVLVRG 114
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEF 142
K+ W + + +I+ GNL+D + T I S+ A + EV+I
Sbjct: 115 KLVWSITVCVNIINDSGNLMDLVAM--------TAISSLLTAL------KREVEICG--- 157
Query: 143 LQFDTSGVPVITTLTKVPFPLIVHNL 168
+ V ++T + P PL +H++
Sbjct: 158 -----TDVKILTVEERKPKPLSIHHI 178
>gi|425771553|gb|EKV09992.1| 3' exoribonuclease family protein [Penicillium digitatum Pd1]
gi|425777048|gb|EKV15242.1| 3' exoribonuclease family protein [Penicillium digitatum PHI26]
Length = 387
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAE 126
E K W LYID ++IS GN DA A++ AAL +T +P A+
Sbjct: 216 EVKAFWVLYIDVMIISLAGNPFDAAWASVLAALRDTKLPKAWWDAD 261
>gi|358371114|dbj|GAA87723.1| 3' exoribonuclease family protein [Aspergillus kawachii IFO 4308]
Length = 403
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
E K W LYID ++IS GN DA A++ AAL +T +P
Sbjct: 224 EIKAFWVLYIDIMIISLAGNPFDAAWASVLAALRDTKLP 262
>gi|317033489|ref|XP_001395918.2| 3' exoribonuclease family protein [Aspergillus niger CBS 513.88]
Length = 403
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
E K W LYID ++IS GN DA A++ AAL +T +P
Sbjct: 224 EIKAFWVLYIDIMIISLAGNPFDAAWASVLAALRDTKLP 262
>gi|380480855|emb|CCF42188.1| exosome complex exonuclease RRP43 [Colletotrichum higginsianum]
Length = 342
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 20/34 (58%)
Query: 86 WDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
W LYID IS DGN D AI AAL +T IP
Sbjct: 194 WVLYIDIFFISFDGNPFDVAWTAILAALRDTTIP 227
>gi|350637180|gb|EHA25538.1| hypothetical protein ASPNIDRAFT_211401 [Aspergillus niger ATCC
1015]
Length = 403
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
E K W LYID ++IS GN DA A++ AAL +T +P
Sbjct: 224 EIKAFWVLYIDIMIISLAGNPFDAAWASVLAALRDTKLP 262
>gi|320586467|gb|EFW99137.1| 3 exoribonuclease family protein [Grosmannia clavigera kw1407]
Length = 389
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP---------SVHVAAEAASDE 131
E K W LYID L +S DGN DA AA+ AAL +T +P V + + ++
Sbjct: 220 ELKAYWTLYIDLLFLSFDGNPFDAAWAAVVAALRDTQLPLARWDADRGEVVCSPQTETES 279
Query: 132 QPEVDISDEEFLQFDTSGVPVITT 155
+PE +++ L G+PV TT
Sbjct: 280 EPETNVASSAPLTL--RGLPVATT 301
>gi|401422248|ref|XP_003875612.1| exosome complex exonuclease RRP45 homolog,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322491850|emb|CBZ27123.1| exosome complex exonuclease RRP45 homolog,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 363
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFV-DCSPTAEPTFEGRGGEELSAELSSALQHC 60
G+T A+V +L PS +P G + +P + + + +S L+ L
Sbjct: 60 GNTVATATVSCDLVEPSPYRPKHGFFEVHARQLLHERDPLDQLKEIKRISMYLTRLL--- 116
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+G+ ++ L V+ G+ W + + +++++DGN+ D A+ AAL + P
Sbjct: 117 -------SGSVLETEGLCVIPGRRVWSIDAEVIIVNNDGNVQDVAQWAVMAALQHVRRPE 169
Query: 121 VHVAAE 126
+ + E
Sbjct: 170 LTIRGE 175
>gi|134080652|emb|CAK41317.1| unnamed protein product [Aspergillus niger]
Length = 285
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
E K W LYID ++IS GN DA A++ AAL +T +P
Sbjct: 145 EIKAFWVLYIDIMIISLAGNPFDAAWASVLAALRDTKLP 183
>gi|145521242|ref|XP_001446476.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413954|emb|CAK79079.1| unnamed protein product [Paramecium tetraurelia]
Length = 984
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 17 PSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSS 76
P+ ++P +G + +D + + +L E+ ++ + G K+ +D S
Sbjct: 823 PNPIRPSEGFLKFHLDLQVLRDTGYM-HNPIKLDMEIEKYIEKVIKGSKA-----LDTES 876
Query: 77 LVVVEGKVCWDLYIDGLVISSDGNLLDAL 105
L ++ GK W + ++ +I++DGNLLDA+
Sbjct: 877 LCILSGKNVWSIDVNVALINNDGNLLDAM 905
>gi|329766295|ref|ZP_08257842.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137197|gb|EGG41486.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 271
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 21/111 (18%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS----PTAEPTFE----GRGGEELSAE 52
+G ++V+ VK + RP PD G IF+ C+ P + P+ E G EL+
Sbjct: 54 LGDSEVVCGVKIQPDRPF---PDMGDKGIFI-CTAELLPLSHPSVETGPPGPDVIELARV 109
Query: 53 LSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
+ ++ + IDLS LV+ + K ++ D +V+ DGNL D
Sbjct: 110 VDRGIRESHM---------IDLSQLVIEKNKSVVGVFADNVVVDYDGNLFD 151
>gi|393796027|ref|ZP_10379391.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 271
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 21/111 (18%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS----PTAEPTFE----GRGGEELSAE 52
+G ++V+ VK + RP PD G IF+ C+ P + P+ E G EL+
Sbjct: 54 LGDSEVVCGVKIQPDRPF---PDMGDKGIFI-CTAELLPLSHPSVETGPPGPDVIELARV 109
Query: 53 LSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
+ ++ + IDLS LV+ + K ++ D +V+ DGNL D
Sbjct: 110 VDRGIRESHM---------IDLSQLVIEKNKSVVGVFADNVVVDYDGNLFD 151
>gi|407425705|gb|EKF39504.1| ribosomal RNA processing protein 45, putative [Trypanosoma cruzi
marinkellei]
Length = 333
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGR--GGEELSAELSSALQH 59
G T V A++ EL P +P G + V P E + G ++L+A L ++
Sbjct: 61 GGTIVTAAIACELVEPYPYRPKHGMLDFSVR-QPCTERDSSAKTAGLKKLTAFLERLIK- 118
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
G +D SL V+ G+ W + +D V++ +GN+ D A A L + P
Sbjct: 119 --------GGGVVDTESLCVLPGRRVWSISVDVTVLNDEGNVTDVAVWATVAVLLHYRRP 170
Query: 120 SVHV 123
+ +
Sbjct: 171 ELTI 174
>gi|121704102|ref|XP_001270315.1| 3' exoribonuclease family protein [Aspergillus clavatus NRRL 1]
gi|119398459|gb|EAW08889.1| 3' exoribonuclease family protein [Aspergillus clavatus NRRL 1]
Length = 416
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
E K W LYID ++IS GN DA A+ AAL +T +P
Sbjct: 237 EIKAFWVLYIDVMIISLAGNPFDAAWTAVLAALRDTKLP 275
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,686,832,898
Number of Sequences: 23463169
Number of extensions: 114078520
Number of successful extensions: 259941
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 206
Number of HSP's that attempted gapping in prelim test: 258205
Number of HSP's gapped (non-prelim): 1150
length of query: 168
length of database: 8,064,228,071
effective HSP length: 128
effective length of query: 40
effective length of database: 9,355,909,735
effective search space: 374236389400
effective search space used: 374236389400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 71 (32.0 bits)