BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030980
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15024|EXOS7_HUMAN Exosome complex component RRP42 OS=Homo sapiens GN=EXOSC7 PE=1 SV=3
Length = 291
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 13/169 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVPFPLIV 165
V V DE+ ++++SD+ + ++ VP I TL K+ + +V
Sbjct: 168 VRV----LEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVV 212
>sp|Q9D0M0|EXOS7_MOUSE Exosome complex exonuclease RRP42 OS=Mus musculus GN=Exosc7 PE=2
SV=2
Length = 291
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 96/163 (58%), Gaps = 13/163 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKS----SVDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVA--AEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKV 159
V V E A D +++SD+ + ++ VP I TL K+
Sbjct: 168 VRVLEDEEGAKD----IELSDDPYDCIRLSVENVPCIVTLCKI 206
>sp|Q54VM4|EXOS7_DICDI Putative exosome complex exonuclease RRP42 OS=Dictyostelium
discoideum GN=exosc7 PE=3 SV=1
Length = 324
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 91/210 (43%), Gaps = 48/210 (22%)
Query: 1 MGSTDVIASVKAELGR------PSAMQPDKGKVAIF-VDCSPTAEPTFEGRGGEELSAEL 53
+ T+V+ VKAE+ + Q D K +F V+C P+A P FEG+G E L+ EL
Sbjct: 51 LSQTEVLVGVKAEITHIQSEITSNLQQSDTSKRLVFSVNCCPSASPEFEGKGSEFLNIEL 110
Query: 54 SSALQHCL------------------------------------LGGKSGAGAGIDLSSL 77
S L+ G +G D +
Sbjct: 111 SKQLERLYSHPNVIKNLKLTNPIISNNNNNNNKIKEAEEGKEKEKEGDIITNSGDD-NCF 169
Query: 78 VVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDI 137
+V GK W LY+D +V+ SDGNL DAL A ++AL NT IP V A E+ ++
Sbjct: 170 SIVSGKYYWTLYVDAIVLDSDGNLFDALSIACRSALQNTRIP--RVKAIQGEYEEITFEV 227
Query: 138 SD--EEFLQFDTSGVPVITTLTKVPFPLIV 165
SD E+ L VP+ TLTK+ ++
Sbjct: 228 SDDPEDTLSLSIDNVPICVTLTKIGNQFVI 257
>sp|Q5JIR7|ECX2_PYRKO Probable exosome complex exonuclease 2 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1633 PE=3
SV=1
Length = 272
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +KAELG P PD+G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGDTQVLVGIKAELGEPFPDLPDRGVITTNVELVPLASPTFEPGPPDENAIELARVVDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ +DL LV+V GK+ ++ID V+ GNLLDA G AAL +T +P
Sbjct: 114 IRESQA-----VDLEKLVIVPGKLVRVIFIDVHVLDHGGNLLDASGIGAIAALLSTKLPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V+ ++E EV+I D E+ + VP+ T K+ ++V
Sbjct: 169 VNY-----NEETGEVEILD-EYEPLPVNHVPIPVTFAKIGNSIVV 207
>sp|Q8TYC2|ECX2_METKA Probable exosome complex exonuclease 2 OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0380 PE=3 SV=1
Length = 267
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T ++ VK E+GRP P++G +A+ + P A+P+FE +E + ELS +
Sbjct: 53 LGNTQLVVGVKLEVGRPYPDSPNEGALAVNAELVPLADPSFEPGPPDENAIELSRVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + IDL L + EG+ CW ++D V+ DGNL DA +ALS T +P
Sbjct: 113 IRESEM-----IDLEELCIEEGEHCWVTFVDIHVLDHDGNLFDASMIGSVSALSITEVPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
AE D EV++ +E+ + P+ T+ KV L+V
Sbjct: 168 ----AEVVDD---EVEVMEEDTEPLAINDFPISVTIAKVGEYLLV 205
>sp|C5A2B8|ECX2_THEGJ Probable exosome complex exonuclease 2 OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_2035 PE=3 SV=1
Length = 273
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +K ++G P PD+G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGGTRVLVGIKVDVGEPFPDLPDRGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L LV+V GK+ ++ID V+ DGNL DA G A AAL T IP
Sbjct: 114 IRESQA-----VELEKLVIVPGKLVRVVFIDVHVLDHDGNLFDATGLAAMAALMTTKIPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V ++E E+ I +E+ VP+ T K+ +IV
Sbjct: 169 VEY-----NEETGEI-IKLDEYEPLPVKHVPIPVTFAKIGSSIIV 207
>sp|B6YSE7|ECX2_THEON Probable exosome complex exonuclease 2 OS=Thermococcus onnurineus
(strain NA1) GN=TON_0031 PE=3 SV=1
Length = 272
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +K ++G P P+KG + V+ P A P+FE +E + EL+ +
Sbjct: 54 LGNTQVLVGIKVDMGEPFPDLPEKGVITTNVELVPLASPSFEPGPPDERAIELARVVDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA ++L LV+V GK+ ++ID V+ DGNLLDA G AAL + +P
Sbjct: 114 I--RESGA---VELEKLVIVPGKLVRVVFIDVHVLDHDGNLLDASGIGAIAALMSAKMPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V +E EV I D E+ S +P+ T+ KV L+V
Sbjct: 169 V-----VYDEESGEVQILD-EYEPLPVSKMPIPVTIAKVGGNLLV 207
>sp|O59224|ECX2_PYRHO Probable exosome complex exonuclease 2 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1548 PE=3 SV=1
Length = 274
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+ +K LG P P+ G + V+ P A PTFE +E + EL+
Sbjct: 54 LGSTQVLVGIKTTLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVTDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L +V+V GK+ ++ID V+ DGNL+DA+G A AAL N +P
Sbjct: 114 IRESRA-----LNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIASIAALLNAKVPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V ++E EV+I +E+ +P+ T K+ L+V
Sbjct: 169 VEY-----NEETGEVEILEEKE-PLPVERIPIPVTFAKIGNILVV 207
>sp|Q975G9|ECX2_SULTO Probable exosome complex exonuclease 2 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_04420 PE=3 SV=1
Length = 275
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK E P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGDTMVLAGVKLEEEEPFPDTPNQGNLVVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DLS LV++ GK W ++D V+ GN+LDA A AAL NT +P
Sbjct: 118 LRDSKA-----VDLSKLVIIPGKKVWTAWVDVYVLDYGGNVLDACTLAAVAALYNTKLPK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVPFPLIV 165
V + E V I EE PV+T T+ K+ L+V
Sbjct: 173 VEI-------EGDNVKIIKEEKTDVTPIAYPVVTVTVAKIGKYLVV 211
>sp|Q8U0M0|ECX2_PYRFU Probable exosome complex exonuclease 2 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1567 PE=3 SV=1
Length = 277
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KA LG P P+ G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGNTQVLVGIKATLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L +V+ GK+ ++ID V+ DGNL+DA+G AAL N +P
Sbjct: 114 IRESRA-----LNLEKMVIAPGKIVRVVFIDVHVLDHDGNLMDAIGIGAIAALLNARVPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPLIV 165
V ++E EV+I EE +P+ T K+ L+V
Sbjct: 169 V-----LYNEETGEVEIL-EEKEPLPVEKIPISVTFAKIGNYLVV 207
>sp|O26778|ECX2_METTH Probable exosome complex exonuclease 2 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_682 PE=1 SV=1
Length = 271
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 12/159 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T +I VK ++G P P+ G + + P A PTFE +E S ELS + C
Sbjct: 55 LGNTQIIVGVKPQIGEPFPDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRC 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + IDL L ++EG W L++D +I DGNL DA A AAL +T IP
Sbjct: 115 IRESRM-----IDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIP- 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
AA E EV I+ E+ + ++ T K+
Sbjct: 169 ------AAEVEDGEVVINREKMQPLPVNRKALMCTFAKI 201
>sp|Q2KHU3|EXOS8_BOVIN Exosome complex component RRP43 OS=Bos taurus GN=EXOSC8 PE=2 SV=1
Length = 276
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 75/157 (47%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE G P PDKG V VD SP F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + ++ DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + L T PV T+
Sbjct: 167 EVTINEETA---LAEVNLKKKSCLNIRTH--PVATSF 198
>sp|Q96B26|EXOS8_HUMAN Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1
Length = 276
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE PS PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T PV T+
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSF 198
>sp|Q9D753|EXOS8_MOUSE Exosome complex component RRP43 OS=Mus musculus GN=Exosc8 PE=2 SV=1
Length = 276
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PD+G V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
V + E A EV++ + +L T+ PV T+
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNVRTN--PVATSF 198
>sp|Q9UXC0|ECX2_SULSO Probable exosome complex exonuclease 2 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=SSO0732 PE=1 SV=1
Length = 275
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 172
Query: 121 VHVAAEAASDEQPEV 135
V + S + EV
Sbjct: 173 VEQHSNGISVNKNEV 187
>sp|C3NED0|ECX2_SULIY Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=YG5714_1402 PE=3
SV=1
Length = 275
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 172
Query: 121 VH 122
V
Sbjct: 173 VE 174
>sp|C3MVG5|ECX2_SULIM Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=M1425_1407 PE=3 SV=1
Length = 275
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALHNTKVYK 172
Query: 121 VH 122
V
Sbjct: 173 VE 174
>sp|C3MQ47|ECX2_SULIL Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=LS215_1502 PE=3 SV=1
Length = 275
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 172
Query: 121 VH 122
V
Sbjct: 173 VE 174
>sp|C4KHE3|ECX2_SULIK Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=M164_1401 PE=3 SV=1
Length = 275
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 172
Query: 121 VH 122
V
Sbjct: 173 VE 174
>sp|C3N5R4|ECX2_SULIA Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain M.16.27) GN=M1627_1457 PE=3 SV=1
Length = 275
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALHNTKVYK 172
Query: 121 VH 122
V
Sbjct: 173 VE 174
>sp|Q9YC05|ECX2_AERPE Probable exosome complex exonuclease 2 OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_1445 PE=3 SV=1
Length = 276
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA VKA +G P P++G + + + P A P FE +E + EL+ +
Sbjct: 58 LGKTQVIAGVKAGVGAPFKDTPNQGVLTVHAEFVPLASPVFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L GA +DL SLV+ G+ W L++D +I DGNL DA A A L +P
Sbjct: 118 L----REVGA-VDLESLVIRPGEKVWVLWVDLYIIDHDGNLFDASMLATMAVLLTARLPR 172
>sp|C3NHC2|ECX2_SULIN Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=YN1551_1441 PE=3
SV=1
Length = 275
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 172
Query: 121 VH 122
V
Sbjct: 173 VE 174
>sp|Q9HIP1|ECX2_THEAC Probable exosome complex exonuclease 2 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1294 PE=3 SV=2
Length = 260
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A VK E G P PD+G + V+ P A P+FE +L+ E+S +
Sbjct: 56 LGNTRVVAGVKIEAGEPFPDTPDQGVLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRG 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K I LV+ +GK W +++D V+ DGNL+DA A AAL N +P+
Sbjct: 116 IRESKM-----ISPEKLVIEQGKKVWIVFLDINVLDYDGNLIDASTIAAVAALRNAVVPA 170
>sp|Q97BZ4|ECX2_THEVO Probable exosome complex exonuclease 2 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=TV0311 PE=3 SV=1
Length = 260
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK E G P PD+G + V+ P A P+FE +L+ E+S +
Sbjct: 56 LGKTRVVAGVKIEAGEPFPDTPDQGVLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRG 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K I LV+ +GK W +++D V+ DGNL+DA A +AL N +P+
Sbjct: 116 IRESKM-----ISPDKLVIEQGKKVWIVFLDINVLDYDGNLIDACTIAAVSALRNAIVPA 170
Query: 121 VHVAAE 126
E
Sbjct: 171 SREGGE 176
>sp|Q8ZVN0|ECX2_PYRAE Probable exosome complex exonuclease 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=PAE2206 PE=3 SV=1
Length = 274
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 18/163 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSA---- 56
+G T V+A VK LG+P PD+G + + + P A P E +E + EL+
Sbjct: 59 LGKTHVVAGVKVGLGQPFPDAPDEGVLVVNAEVLPHASPYTEVGPPDEFAIELARVVDRG 118
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++HC +D L V EG + L+ID VI+ DGNL+D A AAL NT
Sbjct: 119 IRHC---------GYVDFKKLAV-EGGKAYVLWIDLYVINDDGNLIDVANLASVAALKNT 168
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159
+P V V EA ++D +++ L D S P+ ++ K+
Sbjct: 169 QLPVV-VKDEAGV---VKLDRNNKAPLPVDISKAPIAVSVGKI 207
>sp|Q0W2Y7|ECX2_UNCMA Probable exosome complex exonuclease 2 OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_09920 PE=3 SV=1
Length = 260
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G + V+ VK + G P PD G + ++ P A PTFE E + EL+ +
Sbjct: 53 IGDSQVVVGVKIQPGEPFPDTPDSGVIITNLELVPLASPTFESGPPREDAIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA IDLS L + G+ W ++ID V+ DGNL+DA AAL T IP+
Sbjct: 113 VR--ESGA---IDLSKLCIESGQKVWMVFIDVHVLDHDGNLMDAASLGAIAALKATKIPN 167
>sp|Q9V118|ECX2_PYRAB Probable exosome complex exonuclease 2 OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=PYRAB06110 PE=1 SV=1
Length = 274
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 20/163 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+ +K LG P P+ G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGSTQVLVGIKTSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K+ ++L +V+V GK+ ++ID V+ DGNL+DA+G A AAL N +P
Sbjct: 114 IRESKA-----LNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVPFPL 163
V E EV+ DE T +PV K+P P+
Sbjct: 169 VRYNEETG-----EVETLDE------TEPLPV----EKIPVPV 196
>sp|O29756|ECX2_ARCFU Probable exosome complex exonuclease 2 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=AF_0494 PE=1 SV=1
Length = 259
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK + G P PD+G + + + P A PTFE +E S EL+ +
Sbjct: 53 LGDTQVVVGVKMQPGEPYPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DLS LV+ EG+ W +++D + DGNLLDA A AAL NT +P+
Sbjct: 113 I-----RESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPA 167
>sp|Q8PTT7|ECX2_METMA Probable exosome complex exonuclease 2 OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2624 PE=3 SV=1
Length = 266
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ VK + G P D+G + ++ +P A P FE E + E++ +
Sbjct: 55 LGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREDAIEMARVVDRG 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA ID+ L + G+ W ++ID ++++DGN++DA A AAL T +P+
Sbjct: 115 I--RESGA---IDIKKLCITVGESVWIVFIDVHILNNDGNIIDASCLAAIAALMTTMVPN 169
>sp|Q8TGX5|ECX2_METAC Probable exosome complex exonuclease 2 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_1776 PE=3 SV=1
Length = 266
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ VK + G P D+G + ++ +P A P FE E + E++ +
Sbjct: 55 LGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRG 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA ID+ L + G+ W ++ID V++ DGN++DA A AAL T +P+
Sbjct: 115 I--RESGA---IDIKKLCITVGESVWIVFIDVHVLNDDGNIIDASCLAAIAALMTTMVPN 169
>sp|O74918|RRP45_SCHPO Exosome complex component rrp45 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp45 PE=3 SV=1
Length = 291
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 13/133 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEE---LSAELSSA 56
G T V+A + E+ +P +P G +I + +P A FE GR ++ +S + A
Sbjct: 51 FGHTRVMARITTEITKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKA 110
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ +S A +D SL ++ G+ CW + I+ DGNL+DA A+ AAL +
Sbjct: 111 VR------RSNA---LDTESLCIISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHF 161
Query: 117 GIPSVHVAAEAAS 129
P + V E +
Sbjct: 162 RRPELTVVGEEVT 174
>sp|Q9JHI7|EXOS9_MOUSE Exosome complex component RRP45 OS=Mus musculus GN=Exosc9 PE=2 SV=1
Length = 438
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V E + PE
Sbjct: 165 VSVQGEEVTLYTPE 178
>sp|Q4QR75|EXOS9_RAT Exosome complex component RRP45 OS=Rattus norvegicus GN=Exosc9 PE=2
SV=1
Length = 437
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V E + PE
Sbjct: 165 VSVQGEEVTLYTPE 178
>sp|Q10205|RRP43_SCHPO Exosome complex component rrp43 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp43 PE=3 SV=1
Length = 270
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G + +KAE+ P P++G + ++ SP F+ +L+ +S L L
Sbjct: 66 GENVFVCGIKAEIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTL 125
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
I+L SL + E K W LY D + ++ DG+ D AA+ AAL +P+
Sbjct: 126 -----QQSNLINLQSLCIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPT 179
>sp|Q06265|EXOS9_HUMAN Exosome complex component RRP45 OS=Homo sapiens GN=EXOSC9 PE=1 SV=3
Length = 439
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ ++ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPE 134
V V + + PE
Sbjct: 165 VSVQGDEVTLYTPE 178
>sp|Q3SWZ4|EXOS9_BOVIN Exosome complex component RRP45 OS=Bos taurus GN=EXOSC9 PE=2 SV=1
Length = 440
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAAS 129
V V + +
Sbjct: 165 VSVQGDEVT 173
>sp|Q05636|RRP45_YEAST Exosome complex component RRP45 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRP45 PE=1 SV=1
Length = 305
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V + ++ +P +P +G I + SP A FE G E S ++
Sbjct: 51 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ A L + P
Sbjct: 111 SV--RRSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKP 165
Query: 120 SVHVAAE 126
+ V E
Sbjct: 166 DITVHGE 172
>sp|Q12277|RRP42_YEAST Exosome complex component RRP42 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRP42 PE=1 SV=1
Length = 265
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
LL +G+G+D S L + + K + +++D LVISS + + + AI +AL++T +P
Sbjct: 97 SLLNKVLKSGSGVDSSKLQLTK-KYSFKIFVDVLVISSHSHPVSLISFAIYSALNSTYLP 155
Query: 120 SV 121
+
Sbjct: 156 KL 157
>sp|Q2NTH8|PURT_SODGM Phosphoribosylglycinamide formyltransferase 2 OS=Sodalis
glossinidius (strain morsitans) GN=purT PE=3 SV=1
Length = 392
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 50 SAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISS 97
+A+L +A Q+ LGG++G G V+VEG V +D I L I++
Sbjct: 171 AAQLDAAWQYAQLGGRAGGGK-------VIVEGLVAFDFEITLLTINA 211
>sp|B6D5P1|DAAF1_PERPL Dynein assembly factor 1, axonemal OS=Peromyscus polionotus
GN=Dnaaf1 PE=2 SV=1
Length = 622
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 69 GAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAA 128
G GI+ + + +E K L+ID L D +D + +++ TGIP + V + +
Sbjct: 430 GTGIEDTEAIALENK--ERLFIDDLPDLED---VDGMDISMEDQTKETGIPKIQVISSLS 484
Query: 129 SDEQPEVDISDEEFLQFDTSG 149
D PE++ S L+ +G
Sbjct: 485 DDSDPELNDSPLPMLEHTPTG 505
>sp|Q0A577|HEM3_ALHEH Porphobilinogen deaminase OS=Alkalilimnicola ehrlichei (strain
MLHE-1) GN=hemC PE=3 SV=1
Length = 308
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 17 PSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSS 76
P P G+ A+ ++C E R +EL A L H LL + A + S
Sbjct: 189 PEESLPAVGQGALGIEC------LAEDRRVQELVAPLDHGPTHTLLKAERAMNARLQGSC 242
Query: 77 LVVVEGKVCW---DLYIDGLVISSDGN 100
V + G C+ ++++ GLV S DG
Sbjct: 243 QVPIAGYACYQGEEIWLRGLVGSPDGQ 269
>sp|P98159|NUDEL_DROME Serine protease nudel OS=Drosophila melanogaster GN=ndl PE=1 SV=2
Length = 2616
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
Query: 13 ELGRPSAMQPDKGK------VAIFVDCSPTAEPT 40
ELG PSA +P+K + V I+V+C+P + T
Sbjct: 1925 ELGHPSASRPEKDRLLPRKCVGIYVECNPYSNKT 1958
>sp|A7MEA0|PURT_CROS8 Phosphoribosylglycinamide formyltransferase 2 OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=purT PE=3 SV=2
Length = 392
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 43 GRGGEELSAE--LSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISS 97
G+G + +E L SA Q+ GG++GAG V+VEG V +D I L IS+
Sbjct: 162 GKGQSFIRSEEMLESAWQYAQQGGRAGAGK-------VIVEGVVKFDFEITLLTISA 211
>sp|Q9KSM8|PURT_VIBCH Phosphoribosylglycinamide formyltransferase 2 OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=purT PE=3 SV=2
Length = 391
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 33 CSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDG 92
C P + +G+ ++ +A Q+ GG+SGAG V+VEG V +D I
Sbjct: 152 CKPVMSSSGKGQSVIRTPEQIEAAWQYAQQGGRSGAGR-------VIVEGFVDFDYEITL 204
Query: 93 LVISS 97
L + +
Sbjct: 205 LTVRA 209
>sp|C3LLS4|PURT_VIBCM Phosphoribosylglycinamide formyltransferase 2 OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=purT PE=3 SV=1
Length = 393
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 33 CSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDG 92
C P + +G+ ++ +A Q+ GG+SGAG V+VEG V +D I
Sbjct: 154 CKPVMSSSGKGQSVIRTPEQIEAAWQYAQQGGRSGAGR-------VIVEGFVDFDYEITL 206
Query: 93 LVISS 97
L + +
Sbjct: 207 LTVRA 211
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,162,911
Number of Sequences: 539616
Number of extensions: 2725976
Number of successful extensions: 6449
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 6375
Number of HSP's gapped (non-prelim): 65
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)