Query 030980
Match_columns 168
No_of_seqs 111 out of 1056
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 11:36:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2po1_B Probable exosome comple 100.0 1E-35 3.6E-40 242.9 18.5 157 1-168 57-213 (277)
2 2nn6_E Exosome complex exonucl 100.0 1.5E-36 5.2E-41 251.0 12.3 163 1-168 67-229 (305)
3 3m7n_G Probable exosome comple 100.0 8.2E-35 2.8E-39 235.6 17.1 149 1-168 53-201 (259)
4 2wnr_A Probable exosome comple 100.0 1.4E-34 4.8E-39 235.3 17.8 156 1-168 55-210 (271)
5 2je6_A RRP42, exosome complex 100.0 2.6E-34 9E-39 234.4 18.5 157 1-168 60-216 (277)
6 2nn6_C Exosome complex exonucl 100.0 7.5E-35 2.6E-39 237.6 14.1 158 1-168 55-213 (278)
7 2wp8_A Exosome complex compone 100.0 1.2E-34 4.1E-39 239.5 14.9 158 1-168 51-224 (305)
8 2nn6_A Polymyositis/scleroderm 100.0 6E-34 2E-38 240.1 15.0 156 1-168 67-227 (358)
9 2wnr_B Probable exosome comple 99.9 4.4E-26 1.5E-30 182.4 18.2 128 1-168 47-176 (240)
10 2po1_A Probable exosome comple 99.9 1E-25 3.4E-30 181.3 17.0 128 1-168 47-176 (249)
11 2nn6_B Exosome complex exonucl 99.9 1.2E-25 4.1E-30 180.8 17.3 128 1-168 47-178 (249)
12 3dd6_A Ribonuclease PH; exorib 99.9 2.3E-26 7.8E-31 185.9 12.5 139 1-168 42-187 (255)
13 3b4t_A Ribonuclease PH; RNAse, 99.9 1.7E-25 5.9E-30 181.1 15.3 139 1-168 37-182 (262)
14 1r6l_A Ribonuclease PH; beta-a 99.9 4E-25 1.4E-29 176.6 16.3 139 1-168 33-177 (239)
15 1udn_A Ribonuclease PH, RNAse 99.9 3E-25 1E-29 179.1 15.3 139 1-168 32-176 (255)
16 1oys_A Ribonuclease PH; transf 99.9 1.4E-25 4.8E-30 180.0 10.6 139 1-168 32-177 (245)
17 2je6_B RRP41, exosome complex 99.9 1.6E-24 5.3E-29 174.4 16.5 128 1-168 51-180 (250)
18 2wp8_B Exosome complex compone 99.9 8.4E-25 2.9E-29 175.5 14.8 128 1-168 44-175 (246)
19 3m7n_D Probable exosome comple 99.9 3E-24 1E-28 173.8 16.3 128 1-168 47-176 (258)
20 2nn6_D Exosome complex exonucl 99.9 1.9E-22 6.5E-27 161.1 14.6 120 1-168 51-172 (237)
21 2nn6_F MTR3, exosome component 99.9 2E-22 6.7E-27 163.9 13.5 128 1-168 57-200 (272)
22 3hkm_A OS03G0854200 protein; R 99.9 9.3E-21 3.2E-25 152.3 13.6 120 1-168 35-156 (246)
23 3cdi_A Polynucleotide phosphor 99.7 8.7E-18 3E-22 152.1 11.7 128 1-168 351-488 (723)
24 1e3p_A Guanosine pentaphosphat 99.7 6E-17 2.1E-21 147.2 15.1 128 1-168 386-527 (757)
25 3u1k_A Polyribonucleotide nucl 99.7 8.3E-17 2.8E-21 143.8 14.1 126 1-168 349-495 (630)
26 3gme_A Polyribonucleotide nucl 99.7 6.7E-17 2.3E-21 142.2 13.2 128 1-168 345-482 (549)
27 3krn_A Protein C14A4.5, confir 99.7 3.5E-19 1.2E-23 141.0 -2.6 118 1-168 26-144 (222)
28 4aid_A Polyribonucleotide nucl 99.7 4.3E-16 1.5E-20 140.8 13.5 107 1-120 361-473 (726)
29 3cdi_A Polynucleotide phosphor 99.5 1E-13 3.6E-18 125.5 11.0 122 1-168 41-172 (723)
30 3u1k_A Polyribonucleotide nucl 99.5 4.7E-13 1.6E-17 119.7 13.3 123 1-168 36-166 (630)
31 4aid_A Polyribonucleotide nucl 99.2 1.3E-10 4.5E-15 105.2 13.9 121 1-168 49-180 (726)
32 3gme_A Polyribonucleotide nucl 99.2 2E-10 6.9E-15 101.1 13.7 121 1-168 35-166 (549)
33 1e3p_A Guanosine pentaphosphat 98.8 9.2E-08 3.1E-12 87.1 15.5 120 2-168 60-190 (757)
34 3em5_A Beta-1,3-glucanase; gly 25.6 38 0.0013 27.4 2.5 25 100-124 213-237 (316)
35 3g9k_L Capsule biosynthesis pr 20.8 30 0.001 28.1 1.0 18 94-111 37-54 (323)
No 1
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=100.00 E-value=1e-35 Score=242.88 Aligned_cols=157 Identities=32% Similarity=0.473 Sum_probs=143.2
Q ss_pred CCCcEEEEEEEeeecCCCCCCCCccEEEEEeeeCCCCCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCccccccceeee
Q 030980 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV 80 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~~~~p~~G~i~~~v~~s~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~~~LcI~ 80 (168)
+|+|+|+|+|++++..|..++|++|+|.++++++|++++.|+.+++++.+.+++++|+|.|+. +++||+++|||.
T Consensus 57 ~G~T~Vl~~V~~~~~~p~~~~~~~g~l~~~~~~~p~a~~~~~~g~~~~~~~~l~~li~r~l~~-----s~~idl~~L~i~ 131 (277)
T 2po1_B 57 LGSTQVLVGIKTSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRE-----SKALNLEKMVIV 131 (277)
T ss_dssp ETTEEEEEEEEEEEECCCTTCTTSCEEEEEEEECGGGCTTCCSSSCCHHHHHHHHHHHHHHHT-----TTSBCGGGGEEE
T ss_pred ECCeEEEEEEEecccCCCCCCCCceEEEEEEEeCCCccccccCCCCChHHHHHHHHHHHHHhh-----cccccHHHcccc
Confidence 599999999999999999889999999999999999999887777788999999999999983 468999999999
Q ss_pred cCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEEEEEEeC
Q 030980 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVP 160 (168)
Q Consensus 81 ~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~vT~~~~~ 160 (168)
||+++|.|+||++||++|||++||+++|+.+||+++++|++.+.++. + ..+++++..++++.++|+++||++++
T Consensus 132 pg~~~w~i~id~~VL~~dG~~~~a~i~aa~~AL~da~~p~~~~~~~~---~---~~~~~~~~~~ipl~~~~~avs~g~~~ 205 (277)
T 2po1_B 132 PGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEET---G---EVETLDETEPLPVEKIPVPVTFAKIG 205 (277)
T ss_dssp TTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEECTTT---C---CEEEEEEEEECCBCCCCEEEEEEEET
T ss_pred CCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCcEEEeCCC---c---eeecccccccccccCceEEEEEEEEC
Confidence 99999999999999999999999999999999999999999997542 1 23345667889999999999999999
Q ss_pred CeEEeeCC
Q 030980 161 FPLIVHNL 168 (168)
Q Consensus 161 ~~~vvDp~ 168 (168)
+.+++||+
T Consensus 206 ~~~l~Dp~ 213 (277)
T 2po1_B 206 NILVVDPS 213 (277)
T ss_dssp TEEEESCC
T ss_pred CEEEeCCC
Confidence 99999996
No 2
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.5e-36 Score=251.02 Aligned_cols=163 Identities=37% Similarity=0.694 Sum_probs=144.4
Q ss_pred CCCcEEEEEEEeeecCCCCCCCCccEEEEEeeeCCCCCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCccccccceeee
Q 030980 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV 80 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~~~~p~~G~i~~~v~~s~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~~~LcI~ 80 (168)
+|+|+|+|+|++|+..|..++|++|++.++|+++|++++.|++|++++.+.+++++|+|.|++ +++||+++||+.
T Consensus 67 ~G~T~Vl~~V~~e~~~p~~~~~~~g~l~~~v~~~p~a~~~~~~r~~~~~~~~isrli~r~lr~-----s~~idl~~L~i~ 141 (305)
T 2nn6_E 67 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNN-----KSSVDLKTLCIS 141 (305)
T ss_dssp ETTEEEEEECCCCCSCCCSSSCSSCCEEEECCCCTTTCSSCCTTSTHHHHHHHHHHHHHHHHH-----SCCSCSSSSCSS
T ss_pred ECCeEEEEEEEEEeeCCCcCCCCceEEEEEEEeCCCcCccccCCCCchHHHHHHHHHHHHHhh-----cCcccHHHheec
Confidence 599999999999999998889999999999999999999998888878999999999999984 479999999999
Q ss_pred cCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEEEEEEeC
Q 030980 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVP 160 (168)
Q Consensus 81 ~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~vT~~~~~ 160 (168)
||+++|.|+||++||++|||++||+++|+.+||+++++|.+.+..++++..+..+..++++..+|+++++|+++||++++
T Consensus 142 p~~~~w~i~idv~VL~~DG~~~daai~aa~~AL~~a~iP~~~~~~~~~~~~~i~~~~d~~~~~~l~l~~~p~avt~g~i~ 221 (305)
T 2nn6_E 142 PREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIG 221 (305)
T ss_dssp TTTCCCCEEEEEEECCCCSSHHHHHHHHHHHTTTTCCCCEEEEECC------EEEEESSCCCSCCCCTTCCCCEEEEESS
T ss_pred cCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEEecCCCCceeeeccCcccccccccccCceEEEEEEEEC
Confidence 99999999999999999999999999999999999999999887532222222233345677999999999999999999
Q ss_pred CeEEeeCC
Q 030980 161 FPLIVHNL 168 (168)
Q Consensus 161 ~~~vvDp~ 168 (168)
+.+|+||+
T Consensus 222 ~~~l~Dpt 229 (305)
T 2nn6_E 222 YRHVVDAT 229 (305)
T ss_dssp SSEESSCC
T ss_pred CEEEECCC
Confidence 99999996
No 3
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=100.00 E-value=8.2e-35 Score=235.61 Aligned_cols=149 Identities=33% Similarity=0.467 Sum_probs=137.9
Q ss_pred CCCcEEEEEEEeeecCCCCCCCCccEEEEEeeeCCCCCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCccccccceeee
Q 030980 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV 80 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~~~~p~~G~i~~~v~~s~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~~~LcI~ 80 (168)
+|+|+|+|+|++++..|..++|++|++.++++++|++++.|..+++++.+.+++++|+|.|++ ++++|+++|||.
T Consensus 53 ~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~~~~~srli~r~lr~-----s~~i~l~~L~i~ 127 (259)
T 3m7n_G 53 LGDTQVVVGVKMQPGEPYPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRGIRE-----SEAVDLSKLVIE 127 (259)
T ss_dssp ETTEEEEEEEEEEEECCCSSCTTSCEEEEEEECCTTSCTTCCSSSSCHHHHHHHHHHHHHHHH-----TTCBCGGGGEEE
T ss_pred ECCcEEEEEEEecccCCCCCCCCceEEEEEEEeCCcccccccCCCCChHHHHHHHHHHHHHhh-----cCCccHHHhccc
Confidence 599999999999999998889999999999999999999887667788999999999999984 468999999999
Q ss_pred cCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEEEEEEeC
Q 030980 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVP 160 (168)
Q Consensus 81 ~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~vT~~~~~ 160 (168)
||+++|.|+||++||++|||++||+++|+.+||+++++|++.+.++ +..+|+++++|.++|+++++
T Consensus 128 pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~~~~~~~--------------~~~~lp~~~~~~avtvg~~~ 193 (259)
T 3m7n_G 128 EGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLG--------------EDYLLPVRDLPVSVTSLIVG 193 (259)
T ss_dssp TTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHTCEECTGGGTSS--------------SCEECCBCCCCEEEEEEEET
T ss_pred CCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEecCC--------------ceecccccCceeEEEEEEEC
Confidence 9999999999999999999999999999999999999998877532 34678899999999999999
Q ss_pred CeEEeeCC
Q 030980 161 FPLIVHNL 168 (168)
Q Consensus 161 ~~~vvDp~ 168 (168)
+.+++||+
T Consensus 194 ~~~l~Dpt 201 (259)
T 3m7n_G 194 NKYLVDPS 201 (259)
T ss_dssp TEEEESCC
T ss_pred CEEEECCC
Confidence 99999996
No 4
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.4e-34 Score=235.33 Aligned_cols=156 Identities=33% Similarity=0.512 Sum_probs=142.5
Q ss_pred CCCcEEEEEEEeeecCCCCCCCCccEEEEEeeeCCCCCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCccccccceeee
Q 030980 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV 80 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~~~~p~~G~i~~~v~~s~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~~~LcI~ 80 (168)
+|+|+|+|+|+++...|..+.|++|+|.++++++|++++.|..+++++.+.+++++|+|.|++ ++++|+++|||.
T Consensus 55 ~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~~~~~s~li~r~lr~-----s~~i~l~~l~i~ 129 (271)
T 2wnr_A 55 LGNTQIIVGVKPQIGEPFPDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRCIRE-----SRMIDLEKLCII 129 (271)
T ss_dssp ETTEEEEEEEEEEEECCCTTCTTCCEEEEEEEECGGGCTTCCCSSCCHHHHHHHHHHHHHHHH-----TTCBCGGGGEEE
T ss_pred ECCeEEEEEEEeeeecCCCCCCCceEEEEEEEeCCcccccccCCCCchHHHHHHHHHHHHHhc-----cCCccHHHcccc
Confidence 599999999999999998888999999999999999999887777788899999999999984 458999999999
Q ss_pred cCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEEEEEEeC
Q 030980 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVP 160 (168)
Q Consensus 81 ~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~vT~~~~~ 160 (168)
||+++|.|+||++||++|||++||+++|+.+||+++++|++.+.++ ...+++++..+++++++|.++||++++
T Consensus 130 pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~~~~~-------~~~~~~~~~~~ip~~~~~~avt~g~~~ 202 (271)
T 2wnr_A 130 EGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDG-------EVVINREKMQPLPVNRKALMCTFAKIG 202 (271)
T ss_dssp TTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEEETT-------EEEEEEEEEEECCBCCCEEEEEEEEET
T ss_pred CCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEecCC-------ceeeccCcccccCccCCeEEEEEEEEC
Confidence 9999999999999999999999999999999999999999999642 133455677889999999999999999
Q ss_pred CeEEeeCC
Q 030980 161 FPLIVHNL 168 (168)
Q Consensus 161 ~~~vvDp~ 168 (168)
+.+++||+
T Consensus 203 ~~~l~Dpt 210 (271)
T 2wnr_A 203 NEIVLDPS 210 (271)
T ss_dssp TEEEESCC
T ss_pred CEEEeCCC
Confidence 99999996
No 5
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=100.00 E-value=2.6e-34 Score=234.40 Aligned_cols=157 Identities=29% Similarity=0.376 Sum_probs=140.8
Q ss_pred CCCcEEEEEEEeeecCCCCCCCCccEEEEEeeeCCCCCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCccccccceeee
Q 030980 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV 80 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~~~~p~~G~i~~~v~~s~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~~~LcI~ 80 (168)
+|+|+|+|+|+++...|..++|++|.|.++++++|++++.|..+++++.+.+++++|+|.|++ ++++|+++|||.
T Consensus 60 ~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~~~~is~li~r~lr~-----~~~i~~~~l~i~ 134 (277)
T 2je6_A 60 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRD-----SKALDLTKLVIE 134 (277)
T ss_dssp ETTEEEEEEEEEEEECCCTTCTTCCEEEEEEEECTTSCTTCCCSSCCHHHHHHHHHHHHHHHH-----TTCSCGGGGEEE
T ss_pred ECCeEEEEEEEeeeeCCCCCCCCccEEEEEEEeCCccCcccccCCCChHHHHHHHHHHHHHhc-----cCCcCHHHceee
Confidence 599999999999999998888999999999999999999887666778899999999999984 458999999999
Q ss_pred cCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEEEEEEeC
Q 030980 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVP 160 (168)
Q Consensus 81 ~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~vT~~~~~ 160 (168)
|||++|.|+||++||++|||++||+++|+.+||+++++|++++.++ +. ...++++..+++++++|.++||++++
T Consensus 135 ~g~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~p~v~~~~~----~~--~~~~~~~~~~ip~~~~~~avsvg~~~ 208 (277)
T 2je6_A 135 PGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSN----GI--SVNKNEVVGKLPLNYPVVTISVAKVD 208 (277)
T ss_dssp TTTEEEEEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEECC-------C--EEEEEEEEEECCCSCCCEEEEEEEET
T ss_pred cCceEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEecCC----cc--eEeccCccccccccCCeEEEEEEEEC
Confidence 9999999999999999999999999999999999999999999752 11 22334567889999999999999999
Q ss_pred CeEEeeCC
Q 030980 161 FPLIVHNL 168 (168)
Q Consensus 161 ~~~vvDp~ 168 (168)
+.+++||+
T Consensus 209 ~~~l~Dpt 216 (277)
T 2je6_A 209 KYLVVDPD 216 (277)
T ss_dssp TEEEESCC
T ss_pred CEEecCCC
Confidence 99999996
No 6
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=7.5e-35 Score=237.63 Aligned_cols=158 Identities=32% Similarity=0.418 Sum_probs=143.3
Q ss_pred CCCcEEEEEEEeeecCCCCCCCCccEEEEEeeeCCCCCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCccccccceeee
Q 030980 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV 80 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~~~~p~~G~i~~~v~~s~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~~~LcI~ 80 (168)
+|+|+|+|+|++++..|...+|++|+|.++++++|++++.|..+++++.+.+++++|+|.|++ +++||+++|||.
T Consensus 55 ~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~~~~~s~li~r~l~~-----s~~i~l~~L~i~ 129 (278)
T 2nn6_C 55 LGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIEN-----SQIIQKEDLCIS 129 (278)
T ss_dssp ETTEEEEEEEEEEECCCCSSSTTCCCCEEEEECCSSSCTTSCSSSCCHHHHHHHHHHHHHHHH-----HCCSCHHHHCSS
T ss_pred eCCeEEEEEEEEEeecCCCCCCCccEEEEEEEeCCccCccccCCCCcHHHHHHHHHHHHHHhc-----cCCCCHHHCEEe
Confidence 599999999999999998888999999999999999999887666778999999999999983 368999999999
Q ss_pred cCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEEEEEEeC
Q 030980 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVP 160 (168)
Q Consensus 81 ~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~vT~~~~~ 160 (168)
||+++|.|+||++||++|||++||+++|+.+||+++++|++++..+.+ ....++++..+++++++|.++||++++
T Consensus 130 pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~v~~~~~~~-----~~~~~~~~~~~lp~~~~~~avs~g~~~ 204 (278)
T 2nn6_C 130 PGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETA-----LAEVNLKKKSYLNIRTHPVATSFAVFD 204 (278)
T ss_dssp BTTBCEEEEEEEEESSCCSCTTHHHHHHHHHHHHTCCCCCCCBCSSSB-----CCCTTSCCCSCSCCSCCCEEEEEEECT
T ss_pred CCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhCCCCeEEEeCCCc-----ceecCcccccccccCCceEEEEEEEEC
Confidence 999999999999999999999999999999999999999999875421 233456677999999999999999999
Q ss_pred C-eEEeeCC
Q 030980 161 F-PLIVHNL 168 (168)
Q Consensus 161 ~-~~vvDp~ 168 (168)
+ .+|+||+
T Consensus 205 ~~~~l~Dpt 213 (278)
T 2nn6_C 205 DTLLIVDPT 213 (278)
T ss_dssp TTCCEESCC
T ss_pred CceEEECCC
Confidence 8 9999996
No 7
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-34 Score=239.46 Aligned_cols=158 Identities=24% Similarity=0.372 Sum_probs=121.6
Q ss_pred CCCcEEEEEEEeeecCCCCCCCCccEEEEEeeeCCCCCCCCCCCCcc-hhHHHHHHHHHHHHhcCCCCCCccccccceee
Q 030980 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGE-ELSAELSSALQHCLLGGKSGAGAGIDLSSLVV 79 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~~~~p~~G~i~~~v~~s~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~id~~~LcI 79 (168)
+|+|+|+|+|+++++.|..++|++|.+.++++++|++++.|+.++++ +.+++++++|+|.|++ +++||+++|||
T Consensus 51 ~G~T~Vl~~V~~~~~~p~~~~~~~g~~~~~ve~~~~~~~~~~~g~~~~~~~~~is~li~r~l~~-----s~~idl~~L~i 125 (305)
T 2wp8_A 51 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRR-----SGALDVEGLCI 125 (305)
T ss_dssp ETTEEEEEEEEEEEC-CCSSCTTCCEEEEEECCC----------------------CHHHHHHH-----TTSBCGGGGEE
T ss_pred ECCeEEEEEEeccccCCcccCCCCcEEEEEEEECCCCCccccCCCCChhHHHHHHHHHHHHHhh-----ccCcCHHHccc
Confidence 59999999999999999888999999999999999999988644445 7889999999999984 47999999999
Q ss_pred ecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCcee-cCCcccccCCCCCCcEEEEEEE
Q 030980 80 VEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVD-ISDEEFLQFDTSGVPVITTLTK 158 (168)
Q Consensus 80 ~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~Pi~vT~~~ 158 (168)
.||+++|.|+||++||++|||++||+++|+.+||+++++|.+.+.++ ...+. .++++..+|+++++|+++||++
T Consensus 126 ~pg~~~w~I~id~~VL~~DG~~~dAai~aa~~AL~~a~iP~~~~~~~-----~~~i~~~~~~~~~~l~~~~~pvavs~g~ 200 (305)
T 2wp8_A 126 VAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGE-----QIIVHPVNEREPVPLGILHIPICVTFSF 200 (305)
T ss_dssp ETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEECCCBCTTS-----SCCBCCSSSSCCEECCBSCCCEEEEEEE
T ss_pred cCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHhCCCeEEecCC-----ceEecccccccccccccccCeEEEEEEE
Confidence 99999999999999999999999999999999999999999988743 11221 2455668899999999999999
Q ss_pred eC--------------CeEEeeCC
Q 030980 159 VP--------------FPLIVHNL 168 (168)
Q Consensus 159 ~~--------------~~~vvDp~ 168 (168)
++ +.+|+||+
T Consensus 201 i~~~~~~~~~~~~~~~~~~l~Dpt 224 (305)
T 2wp8_A 201 FNPQDTEENIKGETNSEISIIDAT 224 (305)
T ss_dssp CC---------------CEEESCC
T ss_pred EccccccccccccccCCeEEeCCC
Confidence 97 89999996
No 8
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=6e-34 Score=240.11 Aligned_cols=156 Identities=27% Similarity=0.438 Sum_probs=140.9
Q ss_pred CCCcEEEEEEEeeecCCCCCCCCccEEEEEeeeCCCCCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCccccccceeee
Q 030980 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV 80 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~~~~p~~G~i~~~v~~s~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~~~LcI~ 80 (168)
+|+|+|+|+|+++++.|..++|++|++.++++++|++++.|..+++++.+.+++++|+|.|++ +.++|+++|||.
T Consensus 67 ~G~T~VL~tV~~e~~~p~~~~~~~g~l~~~v~~~p~a~~~~~~g~~s~~e~eisrli~r~Lr~-----s~~idl~~LcI~ 141 (358)
T 2nn6_A 67 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRN-----SKCIDTESLCVV 141 (358)
T ss_dssp SSSCEEEEEECCEEECCCSTTTTSCCEEEEEEECTTTCSSCCSSSTHHHHTHHHHHHHHHHHH-----HTCBCSSSSCSB
T ss_pred ECCcEEEEEEEecccCCcccCCCCcEEEEEEEecCCccccccCCCCCHHHHHHHHHHHHHhhh-----ccccchHhhccc
Confidence 699999999999999999889999999999999999999887666778899999999999984 468999999999
Q ss_pred cCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceec---CCcccccCCCCCCcEEEEEE
Q 030980 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDI---SDEEFLQFDTSGVPVITTLT 157 (168)
Q Consensus 81 ~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~Pi~vT~~ 157 (168)
||+++|.|+||++||++|||++||+++|+.+||+++++|.+.+.++ ++.+ ++++..+|++.++|+++||+
T Consensus 142 pg~~~w~I~Vdv~VL~~DGn~~dAai~Aa~aAL~da~iP~v~~~~~-------~v~i~~~~~~~~~~l~i~~~p~avsvg 214 (358)
T 2nn6_A 142 AGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD-------EVTLYTPEERDPVPLSIHHMPICVSFA 214 (358)
T ss_dssp TTTBEEEEEEEEEECSCCSCCHHHHHHHHHHHHHHCCCCCCBCCTT-------CCBCCHHHHTSCCCCCBCCCEEEEEEE
T ss_pred CCCccEEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhCcCcEEeeCC-------eeEecccccccccccCccCCEEEEEEE
Confidence 9999999999999999999999999999999999999999988743 2222 34566889999999999999
Q ss_pred Ee--CCeEEeeCC
Q 030980 158 KV--PFPLIVHNL 168 (168)
Q Consensus 158 ~~--~~~~vvDp~ 168 (168)
++ ++.+|+||+
T Consensus 215 l~~~~~~illDPt 227 (358)
T 2nn6_A 215 FFQQGTYLLVDPN 227 (358)
T ss_dssp ECTTTSSEEESCC
T ss_pred EEeeCCEEEECCC
Confidence 88 889999996
No 9
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.94 E-value=4.4e-26 Score=182.42 Aligned_cols=128 Identities=19% Similarity=0.192 Sum_probs=115.0
Q ss_pred CCCcEEEEEEEe--eecCCCCCCCCccEEEEEeeeCCCCCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCcccccccee
Q 030980 1 MGSTDVIASVKA--ELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLV 78 (168)
Q Consensus 1 lG~T~Vi~~Vk~--ev~~p~~~~p~~G~i~~~v~~s~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~~~Lc 78 (168)
+|+|+|+|+|++ |...|..+.|++|++.++++++|++++.|..+.++..+.+++++|+|.|+ .++|++.|
T Consensus 47 ~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~p~a~~~~~~~~~~~~~~~l~~ll~r~l~-------~~i~l~~~- 118 (240)
T 2wnr_B 47 FGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVEERKRPGPDRRSVEISKITAEALR-------PALILEKF- 118 (240)
T ss_dssp ETTEEEEEEEEEEEECCSSSSCCSSSCEEEEEEEECTTSSSSCCCSSCCHHHHHHHHHHHHHHG-------GGBCGGGS-
T ss_pred ECCeEEEEEEEcCCCCCcccccCCCcEEEEEEEEeCCCCcCCccCCCCChhHHHHHHHHHHHHH-------HhcCHHHC-
Confidence 599999999998 44455667899999999999999999988766778899999999999997 47898877
Q ss_pred eecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEEEEEE
Q 030980 79 VVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTK 158 (168)
Q Consensus 79 I~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~vT~~~ 158 (168)
|+ |+|+||++||++|||++||++.|+.+||+++++| +.++|.++|+++
T Consensus 119 --p~---~~I~i~~~VL~~dG~~~~a~i~aa~~AL~da~iP---------------------------~~~~v~avs~g~ 166 (240)
T 2wnr_B 119 --PR---SVIDVFIEVLEAEGGTRCAGITAASVALADAGIP---------------------------MRDMVVACAAGK 166 (240)
T ss_dssp --TT---EEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCC---------------------------BSSCCEEEEEEE
T ss_pred --CC---cEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCc---------------------------cccceeeEEEEE
Confidence 32 9999999999999999999999999999999998 457899999999
Q ss_pred eCCeEEeeCC
Q 030980 159 VPFPLIVHNL 168 (168)
Q Consensus 159 ~~~~~vvDp~ 168 (168)
+++.+++||+
T Consensus 167 ~~~~~l~Dp~ 176 (240)
T 2wnr_B 167 VGDQVVLDLS 176 (240)
T ss_dssp SSSSEEESCC
T ss_pred ECCEEEeCCC
Confidence 9999999996
No 10
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=99.94 E-value=1e-25 Score=181.30 Aligned_cols=128 Identities=20% Similarity=0.206 Sum_probs=115.7
Q ss_pred CCCcEEEEEEEe--eecCCCCCCCCccEEEEEeeeCCCCCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCcccccccee
Q 030980 1 MGSTDVIASVKA--ELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLV 78 (168)
Q Consensus 1 lG~T~Vi~~Vk~--ev~~p~~~~p~~G~i~~~v~~s~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~~~Lc 78 (168)
+|+|+|+|+|++ |...|..+.|++|+|.++++++|++++.+..+.+++.+.+++++|+|.|+ .++|++.|
T Consensus 47 ~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~~~~~~~~~~~s~li~r~l~-------~~i~l~~~- 118 (249)
T 2po1_A 47 WGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALE-------PALILEMF- 118 (249)
T ss_dssp ETTEEEEEEEEEEEECSSGGGCCSSSCEEEEEEEECGGGSSSCCCSSCCHHHHHHHHHHHHHHG-------GGBCGGGS-
T ss_pred ECCcEEEEEEEcCcccCcccccCCCceEEEEEEEeCCcccccccCCCCCHHHHHHHHHHHHHHH-------hhccHHHC-
Confidence 599999999998 66666678899999999999999999887766677899999999999997 58998876
Q ss_pred eecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEEEEEE
Q 030980 79 VVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTK 158 (168)
Q Consensus 79 I~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~vT~~~ 158 (168)
|+ |.|+||++||++|||++||++.|+.+||+++++| +.++|.++|+++
T Consensus 119 --p~---~~i~I~~~VL~~dG~~~~aai~aa~~AL~da~iP---------------------------~~~~v~avs~g~ 166 (249)
T 2po1_A 119 --PR---TAIDVFIEVLQADAGTRVAGITAASLALADAGIP---------------------------MRDLVAACAAGK 166 (249)
T ss_dssp --TT---EEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCC---------------------------BSSCCEEEEEEE
T ss_pred --CC---CEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCC---------------------------ccCceEEEEEEE
Confidence 43 9999999999999999999999999999999998 347899999999
Q ss_pred eCCeEEeeCC
Q 030980 159 VPFPLIVHNL 168 (168)
Q Consensus 159 ~~~~~vvDp~ 168 (168)
+++.+++||+
T Consensus 167 ~~~~~l~Dp~ 176 (249)
T 2po1_A 167 IEGEIVLDLN 176 (249)
T ss_dssp ETTEEEESCC
T ss_pred ECCEEEecCc
Confidence 9999999995
No 11
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=99.94 E-value=1.2e-25 Score=180.84 Aligned_cols=128 Identities=19% Similarity=0.124 Sum_probs=115.6
Q ss_pred CCCcEEEEEEEeeecCCCC---CCCCccEEEEEeeeCCCCCCCCC-CCCcchhHHHHHHHHHHHHhcCCCCCCccccccc
Q 030980 1 MGSTDVIASVKAELGRPSA---MQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGAGAGIDLSS 76 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~~---~~p~~G~i~~~v~~s~~~~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~~~ 76 (168)
+|+|+|+|+|+++...|.. +.|++|+|.++++++|++++.+. .++++..+.+++++|+|.|+ .++|++.
T Consensus 47 ~G~T~Vl~~V~g~~~~~~~~~~~~~~~g~l~~~~~~~p~a~~~~~~~~~~~~~~~~~~~ll~r~l~-------~~i~~~~ 119 (249)
T 2nn6_B 47 QGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFE-------AAILTQL 119 (249)
T ss_dssp ESSCEEEEEEEEEEECCSSSCCCCCSSCCEEEEEEECTTTSSSCCCTTTSTHHHHHHHHHHHHHHH-------HTTCGGG
T ss_pred ECCeEEEEEEEccCCccccccccCCCcEEEEEEEEcCCCcccccccCCCCCHhHHHHHHHHHHHHH-------HhcCHHH
Confidence 5999999999999887664 68999999999999999998775 34577889999999999998 5899998
Q ss_pred eeeecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEEEE
Q 030980 77 LVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156 (168)
Q Consensus 77 LcI~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~vT~ 156 (168)
|+ .|+|+||++||++|||++||++.|+.+||+++++| +.++|.++|+
T Consensus 120 ~p------~~~I~i~~~VL~~dG~~~~A~i~aa~~AL~da~iP---------------------------l~~~v~avs~ 166 (249)
T 2nn6_B 120 HP------RSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIP---------------------------MRDFVCACSA 166 (249)
T ss_dssp CT------TEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTCCC---------------------------CSSCCEEEEE
T ss_pred CC------CcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCc---------------------------ccCCeeeEEE
Confidence 84 39999999999999999999999999999999987 5689999999
Q ss_pred EEeCCeEEeeCC
Q 030980 157 TKVPFPLIVHNL 168 (168)
Q Consensus 157 ~~~~~~~vvDp~ 168 (168)
+++++.+++||+
T Consensus 167 g~~~~~~l~Dp~ 178 (249)
T 2nn6_B 167 GFVDGTALADLS 178 (249)
T ss_dssp EEETTEEEESCC
T ss_pred EEECCeEEECCC
Confidence 999999999996
No 12
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=99.94 E-value=2.3e-26 Score=185.90 Aligned_cols=139 Identities=22% Similarity=0.139 Sum_probs=120.7
Q ss_pred CCCcEEEEEEEeeecCC-CCCCCCccEEEEEeeeCCCCCCCCCC-----CCcchhHHHHHHHHHHHHhcCCCCCCccccc
Q 030980 1 MGSTDVIASVKAELGRP-SAMQPDKGKVAIFVDCSPTAEPTFEG-----RGGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p-~~~~p~~G~i~~~v~~s~~~~~~~~~-----~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~ 74 (168)
+|+|+|+|+|+++...| ...+|++|+|.++++++|++++.|.. +++++.+.+++++|+|.|+ .+||+
T Consensus 42 ~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~P~a~~~~~~Re~~~g~~~~~~~eisrli~r~lr-------~~i~~ 114 (255)
T 3dd6_A 42 VGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALR-------AVVDL 114 (255)
T ss_dssp ETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECTTSSSSCCCCCCC-CCCCHHHHHHHHHHHHHHH-------HHBCH
T ss_pred ECCeEEEEEEEecCCCCCCCCCCCceEEEEEEEECCCcccccccccccCCCCCHHHHHHHHHHHHHHH-------HhcCh
Confidence 59999999999998875 56679999999999999999988753 3467889999999999998 58999
Q ss_pred cceeeecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEE
Q 030980 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154 (168)
Q Consensus 75 ~~LcI~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~v 154 (168)
+.| |+ |+|+||++||++|||++||+++|+.+||.++++|.+ . + .+..++++.++|.++
T Consensus 115 ~~l----~~--~~I~V~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~--~-~-------------g~~~~iPl~~~v~av 172 (255)
T 3dd6_A 115 EAL----GE--RTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKLL--Q-A-------------EKVSKIPVKDYLAAT 172 (255)
T ss_dssp HHH----CS--CEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHH--H-T-------------TSSSSCCBSSCEEEE
T ss_pred hhc----CC--eEEEEEEEEEECCCCHHHHHHHHHHHHHHHhhhhhh--h-c-------------CcccCCCccCceeEE
Confidence 988 45 999999999999999999999999999999999953 1 1 112356688999999
Q ss_pred EEEEeCCeEE-eeCC
Q 030980 155 TLTKVPFPLI-VHNL 168 (168)
Q Consensus 155 T~~~~~~~~v-vDp~ 168 (168)
|++++++.+| +||+
T Consensus 173 svg~i~g~~vllDpt 187 (255)
T 3dd6_A 173 SVGIVEEQGVVLDLN 187 (255)
T ss_dssp EEEEETTTEEEESCC
T ss_pred EEEEECCEEEEeCCC
Confidence 9999998888 9996
No 13
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.93 E-value=1.7e-25 Score=181.11 Aligned_cols=139 Identities=22% Similarity=0.164 Sum_probs=117.4
Q ss_pred CCCcEEEEEEEeeecCCCCCC-CCccEEEEEeeeCCCCCCCCCCC-----CcchhHHHHHHHHHHHHhcCCCCCCccccc
Q 030980 1 MGSTDVIASVKAELGRPSAMQ-PDKGKVAIFVDCSPTAEPTFEGR-----GGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~~~~-p~~G~i~~~v~~s~~~~~~~~~~-----~~~~~~~~l~~~l~~~l~~~~~~~~~~id~ 74 (168)
+|+|+|+|+|+++...|...+ |++|+|.++++++|++++.|..| .+++.+.+++++|+|.|+ .+||+
T Consensus 37 ~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~p~a~~~~~~Re~~~G~~~~~~~~isrli~r~lr-------~~i~~ 109 (262)
T 3b4t_A 37 FGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLR-------ACIDL 109 (262)
T ss_dssp ETTEEEEEEEEEEESCC----CCSCCEEEEEEEECGGGSSSCCCCHHHHTSCCHHHHHHHHHHHHHHH-------TTBCH
T ss_pred ECCCEEEEEEEecCcCCCccCCCCceEEEEEEEeCCCccccccccccCCCCCCHHHHHHHHHHHHHHH-------HhcCH
Confidence 599999999999999886555 89999999999999999888643 467889999999999998 58999
Q ss_pred cceeeecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccc-cCCCCCCcEE
Q 030980 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFL-QFDTSGVPVI 153 (168)
Q Consensus 75 ~~LcI~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~-~l~i~~~Pi~ 153 (168)
++| |+ |+|+||++||++|||++||+++|+.+||++++.|. ..+ + + .. +++++++|.+
T Consensus 110 ~~l----~~--~~I~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~---~~~----~--~-------~~~~ip~~~~v~a 167 (262)
T 3b4t_A 110 AAL----GE--NTIAIDCDVLQADGGTRTAAITGAYVALADAVTYL---SAA----G--K-------LSDPRPLSCAIAA 167 (262)
T ss_dssp HHH----CS--EEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHH---HHT----T--C-------CSSSCCBCSCEEE
T ss_pred hHC----CC--eEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhhhhh---ccC----C--c-------cccCCcccCceeE
Confidence 988 44 99999999999999999999999999999998542 111 1 1 11 5778999999
Q ss_pred EEEEEeCCeEEeeCC
Q 030980 154 TTLTKVPFPLIVHNL 168 (168)
Q Consensus 154 vT~~~~~~~~vvDp~ 168 (168)
+|++++++.+|+||+
T Consensus 168 vsvg~~~g~~l~Dpt 182 (262)
T 3b4t_A 168 VSVGVVDGRIRVDLP 182 (262)
T ss_dssp EEEEEETTEEEESCC
T ss_pred EEEEEECCEEEECCC
Confidence 999999999999996
No 14
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=99.93 E-value=4e-25 Score=176.58 Aligned_cols=139 Identities=22% Similarity=0.196 Sum_probs=116.9
Q ss_pred CCCcEEEEEEEeeecCCCCCC-CCccEEEEEeeeCCCCCCCCCCC-----CcchhHHHHHHHHHHHHhcCCCCCCccccc
Q 030980 1 MGSTDVIASVKAELGRPSAMQ-PDKGKVAIFVDCSPTAEPTFEGR-----GGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~~~~-p~~G~i~~~v~~s~~~~~~~~~~-----~~~~~~~~l~~~l~~~l~~~~~~~~~~id~ 74 (168)
+|+|+|+|+|+++...|...+ |++|+|.++++++|++++.+..| .+++.+.+++++|+|.|+ .+||+
T Consensus 33 ~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~p~~~~~r~~Re~~~G~~~~~~~~isrli~r~l~-------~~i~~ 105 (239)
T 1r6l_A 33 FGDTKVICTVSAESGVPRFLKGQGQGWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLR-------AALDL 105 (239)
T ss_dssp ETTEEEEEEEEEEESCSSCCC---CCEEEEEEEECTTSSSSCCCCHHHHTSCCHHHHHHHHHHHHHHH-------HTBCG
T ss_pred ECCEEEEEEEEccCccCCccCCCCcEEEEEEEEeCCCccccccccccCCCCCcHHHHHHHHHHHHHHH-------HhcCH
Confidence 599999999999999886544 89999999999999998877433 467889999999999998 58999
Q ss_pred cceeeecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEE
Q 030980 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154 (168)
Q Consensus 75 ~~LcI~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~v 154 (168)
++| |+ |+|+||++||++|||++||++.|+.+||++++.|.. .+ ++..+++++++|.++
T Consensus 106 ~~l----~~--~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~---~~-------------~~~~~ip~~~~~~av 163 (239)
T 1r6l_A 106 SKL----GE--NTLYIDCDVIQADGGTRTASITGATVALIDALAVLK---KR-------------GALKGNPLKQMVAAV 163 (239)
T ss_dssp GGT----CS--EEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHH---HT-------------TCCSSCCBCCCEEEE
T ss_pred HHc----CC--eEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhcchhc---cc-------------CcccccCccCceeEE
Confidence 999 45 888899999999999999999999999999985421 11 112346789999999
Q ss_pred EEEEeCCeEEeeCC
Q 030980 155 TLTKVPFPLIVHNL 168 (168)
Q Consensus 155 T~~~~~~~~vvDp~ 168 (168)
|++++++.+|+||+
T Consensus 164 s~g~~~~~~l~Dpt 177 (239)
T 1r6l_A 164 SVGIYQGVPVLDLD 177 (239)
T ss_dssp EEEEETTEEEESCC
T ss_pred EEEEECCEEEECCC
Confidence 99999999999996
No 15
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=99.93 E-value=3e-25 Score=179.15 Aligned_cols=139 Identities=14% Similarity=0.129 Sum_probs=119.7
Q ss_pred CCCcEEEEEEEeeecCCCC-CCCCccEEEEEeeeCCCCCCCCCC-----CCcchhHHHHHHHHHHHHhcCCCCCCccccc
Q 030980 1 MGSTDVIASVKAELGRPSA-MQPDKGKVAIFVDCSPTAEPTFEG-----RGGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~~-~~p~~G~i~~~v~~s~~~~~~~~~-----~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~ 74 (168)
+|+|+|+|+|+++...|.. ..|++|+|.++++++|++++.+.. +.+++.+.+++++|+|.|+ .+||+
T Consensus 32 ~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~~P~a~~~r~~Re~~~G~~~~~~~eisrli~r~lr-------~~i~~ 104 (255)
T 1udn_A 32 FGKTKVICTASVIENVPNWLKGKGQGWITAEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMR-------TAVEL 104 (255)
T ss_dssp ETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECSCCTTSCCCCSSTTCSCCHHHHHHHHHHHHHHH-------HHBCG
T ss_pred ECCEEEEEEEEcCCcCCCCCCCCCceEEEEEEEcCCCccccccccccCCCCCCHHHHHHHHHHHHHHH-------HhcCH
Confidence 5999999999999998854 458999999999999999887732 3467889999999999998 58999
Q ss_pred cceeeecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEE
Q 030980 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154 (168)
Q Consensus 75 ~~LcI~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~v 154 (168)
++| |+ |+|+||++||++|||++||++.|+.+||++++.|.+ . +.+..+++++++|.++
T Consensus 105 ~~l----~~--~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~---~-------------~~~~~~ipl~~~v~av 162 (255)
T 1udn_A 105 TKI----GE--RTIWVDCDVIQADGGTRTAAITGAFVAVADAIIKLH---K-------------EGIIEETPIKDFVAAV 162 (255)
T ss_dssp GGG----CS--CEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHH---H-------------TTSSSSCCBCCCEEEE
T ss_pred HHc----CC--eEEEEEEEEEeCCCCHHHHHHHHHHHHHHhhcchhc---c-------------cCcccCCCccCceeEE
Confidence 999 55 999999999999999999999999999999996521 1 1123457789999999
Q ss_pred EEEEeCCeEEeeCC
Q 030980 155 TLTKVPFPLIVHNL 168 (168)
Q Consensus 155 T~~~~~~~~vvDp~ 168 (168)
|++++++.+|+||+
T Consensus 163 svg~~~g~~llDpt 176 (255)
T 1udn_A 163 SVGIVNDRILLDLN 176 (255)
T ss_dssp EEEEETTEEEESCC
T ss_pred EEEEECCEEEECCC
Confidence 99999999999996
No 16
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=99.92 E-value=1.4e-25 Score=179.99 Aligned_cols=139 Identities=19% Similarity=0.098 Sum_probs=108.6
Q ss_pred CCCcEEEEEEEeeecCCC-CCCCCccEEEEEeeeCCCCCCCCCCC-----CcchhHHHHHHHHHHHHhcCCCCCCccccc
Q 030980 1 MGSTDVIASVKAELGRPS-AMQPDKGKVAIFVDCSPTAEPTFEGR-----GGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~-~~~p~~G~i~~~v~~s~~~~~~~~~~-----~~~~~~~~l~~~l~~~l~~~~~~~~~~id~ 74 (168)
+|+|+|+|+|+++...|. ...|++|++.++++++|++++.+..| .+++..++++++|+|.|+ .+||+
T Consensus 32 ~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~~p~a~~~~~~Re~~~G~~~~~~~eis~li~r~l~-------~~i~~ 104 (245)
T 1oys_A 32 AGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPQATNQQTIQESSKGKISGRTMEIQRLIGRALR-------AVVDL 104 (245)
T ss_dssp ETTEEEEEEEEEESCCCGGGTTSCCCEEEEEEEC-------------------CHHHHHHHHHHHHHH-------HTBCH
T ss_pred ECCeEEEEEEEeccccCCccCCCCceEEEEEEEeCCCcCcccccccccCCCCchHHHHHHHHHHHHHH-------HhcCH
Confidence 599999999999999885 35689999999999999998877433 367889999999999998 58999
Q ss_pred cceeeecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEE
Q 030980 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154 (168)
Q Consensus 75 ~~LcI~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~v 154 (168)
++| |+ |.|+||+.||++|||++||++.|+.+||++++.|.+ .+ .+..+++++++|.++
T Consensus 105 ~~l----~~--~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~---~~-------------~~~~~ipl~~~v~av 162 (245)
T 1oys_A 105 EKL----GE--RTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLI---KA-------------GTIKTNPITDFLAAI 162 (245)
T ss_dssp HHH----CS--CEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHH---HT-------------TSSSSCCBCSCEEEE
T ss_pred hHC----CC--EEEEEEEEEEeCCCCHHHHHHHHHHHHHHhccchhc---cc-------------CcccccCCCCceeEE
Confidence 998 55 577888889999999999999999999999997743 11 123467889999999
Q ss_pred EEEEeCCeEE-eeCC
Q 030980 155 TLTKVPFPLI-VHNL 168 (168)
Q Consensus 155 T~~~~~~~~v-vDp~ 168 (168)
|++++++.++ +||+
T Consensus 163 s~g~~~g~~vl~Dp~ 177 (245)
T 1oys_A 163 SVGIDKEQGILLDLN 177 (245)
T ss_dssp EEEEETTTEEEESCC
T ss_pred EEEEECCEEEEecCC
Confidence 9999987777 9996
No 17
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=99.92 E-value=1.6e-24 Score=174.36 Aligned_cols=128 Identities=17% Similarity=0.148 Sum_probs=113.2
Q ss_pred CCCcEEEEEEEeee--cCCCCCCCCccEEEEEeeeCCCCCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCcccccccee
Q 030980 1 MGSTDVIASVKAEL--GRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLV 78 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev--~~p~~~~p~~G~i~~~v~~s~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~~~Lc 78 (168)
+|+|+|+|+|++.. ..|..+.|++|.|.++++++|++++.|..+.+++.+.+++++|+|.|+ ..++++.+
T Consensus 51 ~G~T~Vl~~V~g~~e~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~e~~~s~li~r~l~-------~~i~~~~~- 122 (250)
T 2je6_B 51 MGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALE-------SAVLVELF- 122 (250)
T ss_dssp ETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEECTTSSSSCCCSSCCHHHHHHHHHHHHHHH-------TTBCGGGS-
T ss_pred ECCcEEEEEEEcccccccccccCCCcEEEEEEEEeCCCccCCccCCCCChhHHHHHHHHHHHHH-------hhcCHhhC-
Confidence 59999999999844 344567899999999999999999888655677889999999999998 46887765
Q ss_pred eecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEEEEEE
Q 030980 79 VVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTK 158 (168)
Q Consensus 79 I~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~vT~~~ 158 (168)
| .|.|+||++||++|||++||+++|+.+||+++++| +.++|.++|+++
T Consensus 123 --p---~~~i~I~~~VL~~DG~~~~aai~aa~~AL~~a~iP---------------------------~~~~v~avsvg~ 170 (250)
T 2je6_B 123 --P---RTAIDVFTEILQADAGSRLVSLMAASLALADAGIP---------------------------MRDLIAGVAVGK 170 (250)
T ss_dssp --T---TEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCC---------------------------BSSCCEEEEEEE
T ss_pred --C---CcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCC---------------------------ccCceEEEEEEE
Confidence 3 39999999999999999999999999999999998 346899999999
Q ss_pred eCCeEEeeCC
Q 030980 159 VPFPLIVHNL 168 (168)
Q Consensus 159 ~~~~~vvDp~ 168 (168)
+++.+|+||+
T Consensus 171 ~~~~~l~Dpt 180 (250)
T 2je6_B 171 ADGVIILDLN 180 (250)
T ss_dssp ETTEEEESCC
T ss_pred ECCEEEeCCC
Confidence 9999999996
No 18
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8.4e-25 Score=175.54 Aligned_cols=128 Identities=17% Similarity=0.146 Sum_probs=103.7
Q ss_pred CCCcEEEEEEEeeec--CCCCCCCCccEEEEEeeeCCCCCCCCCCC--CcchhHHHHHHHHHHHHhcCCCCCCccccccc
Q 030980 1 MGSTDVIASVKAELG--RPSAMQPDKGKVAIFVDCSPTAEPTFEGR--GGEELSAELSSALQHCLLGGKSGAGAGIDLSS 76 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~--~p~~~~p~~G~i~~~v~~s~~~~~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~~~~id~~~ 76 (168)
+|+|+|+|+|+++.. .|..+.|++|+|.++++++|++++.|..+ ++++.+.+++++|+|.|+ ..++++.
T Consensus 44 ~G~T~Vl~~V~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~r~g~~~~~~~~~s~li~r~l~-------~~i~~~~ 116 (246)
T 2wp8_B 44 QGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNINKFSKFERSKSSHKNERRVLEIQTSLVRMFE-------KNVMLNI 116 (246)
T ss_dssp ETTEEEEEEEEEEEC------CCSSSEEEEEEEEEC--------------CHHHHHHHHHHHHHHH-------HHBCTTT
T ss_pred ECCeEEEEEEEecCCcccccccCCCcEEEEEEEEeCCcccccccccCCCCChhHHHHHHHHHHHHH-------HhhhHHH
Confidence 599999999999987 33456799999999999999999887643 456889999999999998 5788887
Q ss_pred eeeecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEEEE
Q 030980 77 LVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156 (168)
Q Consensus 77 LcI~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~vT~ 156 (168)
| | +|.|+||++||++|||++||++.|+.+||+++++| +.++|.++|+
T Consensus 117 ~---p---~~~I~i~~~VL~~dG~~~~aai~aa~~AL~~a~iP---------------------------~~~~v~avs~ 163 (246)
T 2wp8_B 117 Y---P---RTVIDIEIHVLEQDGGIMGSLINGITLALIDAGIS---------------------------MFDYISGISV 163 (246)
T ss_dssp S---C---SEEEEEEEEEEECCSCHHHHHHHHHHHHHHHHTCC---------------------------BSSCEEEEEE
T ss_pred C---C---CeEEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCc---------------------------ccCceeEEEE
Confidence 7 2 69999999999999999999999999999999988 4579999999
Q ss_pred EEeCCeEEeeCC
Q 030980 157 TKVPFPLIVHNL 168 (168)
Q Consensus 157 ~~~~~~~vvDp~ 168 (168)
+++++.+++||+
T Consensus 164 g~~~~~~l~Dp~ 175 (246)
T 2wp8_B 164 GLYDTTPLLDTN 175 (246)
T ss_dssp EEETTEEESSCC
T ss_pred EEECCEEEECCC
Confidence 999999999996
No 19
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=99.92 E-value=3e-24 Score=173.79 Aligned_cols=128 Identities=22% Similarity=0.211 Sum_probs=114.0
Q ss_pred CCCcEEEEEEEe--eecCCCCCCCCccEEEEEeeeCCCCCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCcccccccee
Q 030980 1 MGSTDVIASVKA--ELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLV 78 (168)
Q Consensus 1 lG~T~Vi~~Vk~--ev~~p~~~~p~~G~i~~~v~~s~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~~~Lc 78 (168)
+|+|+|+|+|++ |...+....|++|+|.++++++|++++.+..+.+++.+.+++++|+|.|+ .+||++.|
T Consensus 47 ~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~P~s~~~r~~~~~~~re~ei~~li~r~l~-------~~i~~~~~- 118 (258)
T 3m7n_D 47 MGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEERKRPGPDRRSIEISKVSKEAFE-------AVIMKELF- 118 (258)
T ss_dssp ETTEEEEEEEEEEEECSSSTTCCSSSCEEEEEEEECGGGSSSCCCSSCCHHHHHHHHHHHHHHH-------TTBCGGGS-
T ss_pred ECCeEEEEEEEcccCCCCccccCCCceEEEEEEEeCCcccccccCCCCCHHHHHHHHHHHHHHH-------hhcCHHhC-
Confidence 599999999995 33444457899999999999999999888767778899999999999998 48899887
Q ss_pred eecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEEEEEE
Q 030980 79 VVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTK 158 (168)
Q Consensus 79 I~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~vT~~~ 158 (168)
| +|.|+||++||++|||+++|++.|+.+||.++++| +.++|.++|+++
T Consensus 119 --p---~~~I~V~~~VL~~DG~~~~Aai~aa~lAL~dagiP---------------------------~~~~v~avsvg~ 166 (258)
T 3m7n_D 119 --P---RSAIDIFVEVLQADAGSRTACLNAASVALVDAGVP---------------------------MKGMITSVAVGK 166 (258)
T ss_dssp --T---TEEEEEEEEEEECCTTHHHHHHHHHHHHHHHTTCC---------------------------BSSEEEEEEEEE
T ss_pred --C---ceEEEEEEEEEEcCCCHHHHHHHHHHHHHHhcCCC---------------------------CCCceEEEEEEE
Confidence 3 59999999999999999999999999999999887 447899999999
Q ss_pred eCCeEEeeCC
Q 030980 159 VPFPLIVHNL 168 (168)
Q Consensus 159 ~~~~~vvDp~ 168 (168)
+++.+|+||+
T Consensus 167 i~~~~llDpt 176 (258)
T 3m7n_D 167 ADGQLVLDPM 176 (258)
T ss_dssp ETTEEEESCC
T ss_pred ECCEEEECCC
Confidence 9999999996
No 20
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=99.89 E-value=1.9e-22 Score=161.08 Aligned_cols=120 Identities=18% Similarity=0.133 Sum_probs=97.3
Q ss_pred CCCcEEEEEEEeeec-CCCCCCCCccEEEEEeeeCCCCCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCccccccceee
Q 030980 1 MGSTDVIASVKAELG-RPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVV 79 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~-~p~~~~p~~G~i~~~v~~s~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~~~LcI 79 (168)
+|+|+|+|+|+++.. .|..+.|++|++.+++ +|+. + .++..+.+++++|+|.|+ .+|+
T Consensus 51 ~G~T~Vl~~V~g~~~~~~~~~~~~~g~l~~~~--~p~~-----g-~~~~~e~~~~~li~r~l~-------------~~i~ 109 (237)
T 2nn6_D 51 QGDTSVLAGVYGPAEVKVSKEIFNKATLEVIL--RPKI-----G-LPGVAEKSRERLIRNTCE-------------AVVL 109 (237)
T ss_dssp ETTEEEEEEEEEEEECC------CCEEEEEEE--ECSS-----S-CCCHHHHHHHHHHHHHHH-------------HHCG
T ss_pred ECCcEEEEEEeCCCcccccccCCCcEEEEEEe--cCCC-----C-CCCccHHHHHHHHHHHHH-------------HHhc
Confidence 599999999999998 5666788999877654 5642 2 344678999999999885 2355
Q ss_pred ecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEEEEEEe
Q 030980 80 VEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159 (168)
Q Consensus 80 ~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~vT~~~~ 159 (168)
.+++.+|.|+||++||++|||++||++.|+.+||+++++| +.++|.++|++++
T Consensus 110 ~~~~p~~~I~I~~~VL~~dG~~~~aai~aa~~AL~da~iP---------------------------~~~~v~avs~g~~ 162 (237)
T 2nn6_D 110 GTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP---------------------------MRALFCGVACALD 162 (237)
T ss_dssp GGCSSSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCC---------------------------CSSCEEEEEEEEC
T ss_pred hhcCCceEEEEEEEEEECCCcHHHHHHHHHHHHHHHcCCC---------------------------cccCeeeEEEEEe
Confidence 5677789999999999999999999999999999999998 4579999999999
Q ss_pred -CCeEEeeCC
Q 030980 160 -PFPLIVHNL 168 (168)
Q Consensus 160 -~~~~vvDp~ 168 (168)
++.+|+||+
T Consensus 163 ~~~~~llDp~ 172 (237)
T 2nn6_D 163 SDGTLVLDPT 172 (237)
T ss_dssp TTCCEEESCC
T ss_pred cCCcEEeCCC
Confidence 789999995
No 21
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=99.88 E-value=2e-22 Score=163.94 Aligned_cols=128 Identities=20% Similarity=0.195 Sum_probs=104.7
Q ss_pred CCCcEEEEEEEeeecCCCC-C------------CCCccEEEEEeeeCCCCCCCCCCCCcchhHHHHHHHHHHHHhcCCCC
Q 030980 1 MGSTDVIASVKAELGRPSA-M------------QPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSG 67 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~~-~------------~p~~G~i~~~v~~s~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 67 (168)
+|+|+|+|+|+++...|.. + .+++|++.++++++|++...+..+.+++.+.+++++|+|.|+
T Consensus 57 ~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~~~~~~~e~~~s~li~r~l~----- 131 (272)
T 2nn6_F 57 AGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALE----- 131 (272)
T ss_dssp SSSCEEEEEEEEEECC-------------------CBCEEEEEEEECTTSSSSCCCSCCHHHHHHHHHHHHHHHT-----
T ss_pred eCCeEEEEEEECCCcccccccccccccccccccCCCceEEEEEEEecCCCcCCccCCCCCHHHHHHHHHHHHHHH-----
Confidence 5999999999999887654 2 578899999999999999888777788999999999999997
Q ss_pred CCccccccceeeecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCC
Q 030980 68 AGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDT 147 (168)
Q Consensus 68 ~~~~id~~~LcI~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i 147 (168)
..++++.+ | .|.|+||++||++|||++||++.|+.+||+++++|.
T Consensus 132 --~~i~~~~~---p---~~~I~I~~~VL~~DG~~~~aai~aa~~AL~da~iP~--------------------------- 176 (272)
T 2nn6_F 132 --PAVRLGRY---P---RAQLEVSALLLEDGGSALAAALTAAALALADAGVEM--------------------------- 176 (272)
T ss_dssp --TTBCSTTS---B---TCEEEEEEEEEECCSSHHHHHHHHHHHHHHHHCCCB---------------------------
T ss_pred --HhccHHHC---C---ceEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCcc---------------------------
Confidence 46777754 3 399999999999999999999999999999999984
Q ss_pred CCCcEEEEEEE---eCCeEEeeCC
Q 030980 148 SGVPVITTLTK---VPFPLIVHNL 168 (168)
Q Consensus 148 ~~~Pi~vT~~~---~~~~~vvDp~ 168 (168)
.+++.++|+++ +++.+|+||+
T Consensus 177 ~~~v~avsvg~~~~~~~~~llDpt 200 (272)
T 2nn6_F 177 YDLVVGCGLSLAPGPAPTWLLDPT 200 (272)
T ss_dssp SSCCEEEECCCCSCSSCCCCSSCC
T ss_pred cCcEEEEEEEEeeccCCeEEeCCC
Confidence 24556666666 5666666664
No 22
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=99.85 E-value=9.3e-21 Score=152.30 Aligned_cols=120 Identities=23% Similarity=0.245 Sum_probs=99.1
Q ss_pred CCCcEEEEEEEeee-cCCCCCCCCccEEEEEeeeCCCCCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCccccccceee
Q 030980 1 MGSTDVIASVKAEL-GRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVV 79 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev-~~p~~~~p~~G~i~~~v~~s~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~~~LcI 79 (168)
+|+|+|+|+|+++. ..|..+.|++|.+.++ ++|. .++ ++..+.+++++|+|.|+ .||+
T Consensus 35 ~G~T~Vl~~V~g~~~~~~~~~~~~~~~~~~~--~~P~-----~g~-~~~~~~e~~~li~r~l~-------------~l~~ 93 (246)
T 3hkm_A 35 QGDTIVLAAVYGPKPGTRKGENPEKASIEVV--WKPM-----TGQ-IGKQEKEYEMTLKRTLQ-------------SICL 93 (246)
T ss_dssp ETTEEEEEEECCCEECCCTTSCSSSCEEEEE--EECS-----SSC-CCTTHHHHHHHHHHHHH-------------HHBC
T ss_pred ECCeEEEEEEecCcCCCcccCCCccEEEEEE--eCCC-----CCC-CChhHHHHHHHHHHHHH-------------HhcC
Confidence 59999999999865 4566778888877654 5663 222 33456889999999885 2356
Q ss_pred ecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEEEEEEe
Q 030980 80 VEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159 (168)
Q Consensus 80 ~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~vT~~~~ 159 (168)
.+++.+|.|+||++||++|||++||++.|+.+||.++++| +.++|.++|++++
T Consensus 94 ~~~~~~~~I~v~~~VL~~dG~~~~aai~aa~~AL~dagiP---------------------------~~~~v~avs~g~~ 146 (246)
T 3hkm_A 94 LTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIP---------------------------LKHLAVAIGCGVL 146 (246)
T ss_dssp TTSSCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCC---------------------------BSSCEEEEEEEEC
T ss_pred ccCCCcEEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCC---------------------------CCCceEEEEEEEE
Confidence 6677789999999999999999999999999999999988 4578999999999
Q ss_pred -CCeEEeeCC
Q 030980 160 -PFPLIVHNL 168 (168)
Q Consensus 160 -~~~~vvDp~ 168 (168)
++.+|+||+
T Consensus 147 ~~g~~llDpt 156 (246)
T 3hkm_A 147 EDGEVILDTN 156 (246)
T ss_dssp TTSCEEESCC
T ss_pred ECCEEEECCC
Confidence 789999996
No 23
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.74 E-value=8.7e-18 Score=152.09 Aligned_cols=128 Identities=12% Similarity=0.051 Sum_probs=98.6
Q ss_pred CCCcEEEEEEEeeecC--CCCC---CCCccEEEEEeeeCCCCCCCCC-CCCcchhHHHHHHHHHHHHhcCCCCCCccccc
Q 030980 1 MGSTDVIASVKAELGR--PSAM---QPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~--p~~~---~p~~G~i~~~v~~s~~~~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~ 74 (168)
+|+|+|+|+|+.+..+ |.++ .+++|++.++++++|++++.+. .+.+..++..+.++++|+|+ .++++
T Consensus 351 ~G~TqVL~~Vt~gp~e~~~~~d~l~~~~~g~~~~~y~~~P~st~e~~r~g~p~~REi~~~~li~raL~-------~vI~~ 423 (723)
T 3cdi_A 351 RGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVL-------AVMPD 423 (723)
T ss_dssp ETTEEEEEEEEECC-------------CTTSEEEEEECCGGGGTCCCCC-----CTTHHHHHHHHHHH-------TTSCC
T ss_pred ECCcEEEEEEEecCcccccCCcccCCCCceEEEEEEecCCCCccccccCCCCCHHHHHHHHHHHHHHH-------HhcCc
Confidence 4999999999988764 2222 4688999999999999987662 23345566778899999997 47876
Q ss_pred cceeeecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEE
Q 030980 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154 (168)
Q Consensus 75 ~~LcI~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~v 154 (168)
+.+ +.|+|+||+.||++|||++||++.|+.+||+++++|. ..++.++
T Consensus 424 ~~~------~p~tI~Vd~~VLesdGs~~~Asi~aa~lAL~dAgVPl---------------------------~~~vaav 470 (723)
T 3cdi_A 424 MDK------FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPI---------------------------KAAVAGI 470 (723)
T ss_dssp SSS------SCSCEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCC---------------------------SSCCEEE
T ss_pred ccC------CCEEEEEEEEEEeCCCCHHHHHHHHHHHHHhcCCCCc---------------------------ccceeeE
Confidence 543 5699999999999999999999999999999999883 3478889
Q ss_pred EEEEeC--C--eEEeeCC
Q 030980 155 TLTKVP--F--PLIVHNL 168 (168)
Q Consensus 155 T~~~~~--~--~~vvDp~ 168 (168)
|+++++ + .+++||+
T Consensus 471 s~gli~~g~~~~iL~Dp~ 488 (723)
T 3cdi_A 471 AMGLVKEGDNYVVLSDIL 488 (723)
T ss_dssp EEEEEEETTEEEEESSCC
T ss_pred EEEEEcCCCceEEEECCC
Confidence 999995 3 5889985
No 24
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.72 E-value=6e-17 Score=147.16 Aligned_cols=128 Identities=9% Similarity=0.049 Sum_probs=105.3
Q ss_pred CCCcEEEEEEEeeecCCCC-----CCCCccEEEEEeeeCCCCCCCCC-CCCcchhHHHHHHHHHHHHhcCCCCCCccccc
Q 030980 1 MGSTDVIASVKAELGRPSA-----MQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~~-----~~p~~G~i~~~v~~s~~~~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~ 74 (168)
+|+|+|+|+|+.+...|.+ ..+++|++.++++++|+++..+. .+.++..+.+++++++|.|+ .+++.
T Consensus 386 ~G~TqVL~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~f~P~st~e~~~~g~~~~reie~~~li~raL~-------~vI~~ 458 (757)
T 1e3p_A 386 RGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAERAIV-------PVLPT 458 (757)
T ss_dssp ETTEEEEEEEEEEEGGGSEECCSSSSCCEESEEEEEECCGGGGTCCCCCSSCCHHHHHHHHHHHHHHG-------GGCCC
T ss_pred ECCcEEEEEEEecCCCccccccccCCCCceEEEEEEEeCCcccccccCCCCCchhHHHHHHHHHHHHH-------Hhccc
Confidence 4999999999976655432 25788999999999999987764 34577889999999999997 35542
Q ss_pred cceeeecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEE
Q 030980 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154 (168)
Q Consensus 75 ~~LcI~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~v 154 (168)
.+++.|+|+||+.||++|||.++|++.|+.+||+++++| +.....++
T Consensus 459 ------~~~~P~tI~V~~~VLesDGs~~~Asi~aa~lAL~dAgIP---------------------------~k~~Vaav 505 (757)
T 1e3p_A 459 ------REEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVP---------------------------LKAPVAGI 505 (757)
T ss_dssp ------TTTSCEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCC---------------------------CSSCCEEE
T ss_pred ------cccCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCC---------------------------cccceEEE
Confidence 245679999999999999999999999999999999988 33566889
Q ss_pred EEEEe----CC----eEEeeCC
Q 030980 155 TLTKV----PF----PLIVHNL 168 (168)
Q Consensus 155 T~~~~----~~----~~vvDp~ 168 (168)
|++++ ++ .+++||+
T Consensus 506 s~gli~eg~dg~~~~~iLlDp~ 527 (757)
T 1e3p_A 506 AMGLISQEINGETHYVALTDIL 527 (757)
T ss_dssp EEEEEEEESSSCEEEEEEESCC
T ss_pred EEEEEecCCCCccceeEEeCCC
Confidence 99999 43 7899985
No 25
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.71 E-value=8.3e-17 Score=143.80 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=105.6
Q ss_pred CCCcEEEEEEEeeecCCCC--C-------CCCccEEEEEeeeCCCCCCCCC-CCCcchhHHHHHHHHHHHHhcCCCCCCc
Q 030980 1 MGSTDVIASVKAELGRPSA--M-------QPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGAGA 70 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~~--~-------~p~~G~i~~~v~~s~~~~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 70 (168)
+|+|+|+|+|+++...|.. + .+++|++.++++++|+++..+. .++++.++..++++++|.|+ .
T Consensus 349 ~G~T~Vl~~Vt~~~~~~~~~~d~~~~~l~~~~~g~~~~~y~~~P~st~e~~~~g~~~rREi~~~~Li~raLr-------~ 421 (630)
T 3u1k_A 349 RGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALY-------P 421 (630)
T ss_dssp ETTEEEEEEEEEECGGGGSCSSHHHHHHHCCCGGGEEEEEECCGGGGTCCCCCSSCCHHHHHHHHHHHHHHG-------G
T ss_pred ECCeEEEEEEEcCCCCchhcccccccccCCCCceEEEEEEEecCCcccccccCCCCChHHHHHHHHHHHHHH-------h
Confidence 4999999999998876643 1 3788999999999999987654 23456778889999999997 4
Q ss_pred cccccceeeecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCC
Q 030980 71 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGV 150 (168)
Q Consensus 71 ~id~~~LcI~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 150 (168)
+++. ++.|+|+||+.||++|||.++|++.|+.+||+++++| +.++
T Consensus 422 vi~~--------~~p~tI~V~~~VLesDGs~~~AsI~aa~lAL~dAGIP---------------------------l~~~ 466 (630)
T 3u1k_A 422 VIPR--------DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVP---------------------------ISSA 466 (630)
T ss_dssp GSCT--------TCSSEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCC---------------------------CSSC
T ss_pred hCcc--------cCCeEEEEEEEEEEcCCCHHHHHHHHHHHHHHhCCCC---------------------------cccc
Confidence 6763 2468999999999999999999999999999999877 4468
Q ss_pred cEEEEEEEeC------C-----eEEeeCC
Q 030980 151 PVITTLTKVP------F-----PLIVHNL 168 (168)
Q Consensus 151 Pi~vT~~~~~------~-----~~vvDp~ 168 (168)
+.++|+++++ + .+++||+
T Consensus 467 Vaavs~gli~~~~~~~g~~~~~~iLlD~~ 495 (630)
T 3u1k_A 467 VAGVAIGLVTKTDPEKGEIEDYRLLTDIL 495 (630)
T ss_dssp CEEEEEEEEEEECSSSSCEEEEEEEESCC
T ss_pred eEEEEEEEecCCCcccccccCceEEecCC
Confidence 8899999987 2 7889985
No 26
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.71 E-value=6.7e-17 Score=142.20 Aligned_cols=128 Identities=13% Similarity=0.079 Sum_probs=99.8
Q ss_pred CCCcEEEEEEEeeecCCC-----CCCCCccEEEEEeeeCCCCCCCCC-CCCcchhHHHHHHHHHHHHhcCCCCCCccccc
Q 030980 1 MGSTDVIASVKAELGRPS-----AMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~-----~~~p~~G~i~~~v~~s~~~~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~ 74 (168)
+|+|+|+|+|+.+..++. ...+++|++.++++++|+++..+. .+.++..+.+++++++|.|+ .+|++
T Consensus 345 ~G~T~Vl~~Vt~gp~~~~~~~~~l~~~~~g~~~~~y~~~P~st~e~~~~g~~~~Reie~~~li~raL~-------~vI~~ 417 (549)
T 3gme_A 345 RGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVL-------AVMPD 417 (549)
T ss_dssp ETTEEEEEEEEEEC---------------CCEEEEEECCGGGTTCCCCSSCCCSSHHHHHHHHHHHHT-------TTCCC
T ss_pred ECCeEEEEEEEecCcccccCccccCCCCceEEEEEEEeCCCCcCCcccCCCCChhHHHHHHHHHHHHH-------HhcCc
Confidence 499999999986653322 223578999999999999887643 23455678899999999997 57886
Q ss_pred cceeeecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEE
Q 030980 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154 (168)
Q Consensus 75 ~~LcI~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~v 154 (168)
+.+ +.|+|+||+.||++|||.++|++.|+..||+++++| +.+++.++
T Consensus 418 ~~~------~P~tI~V~~~VLesDGs~~~AsI~aa~lAL~DAGvP---------------------------m~~~Vaav 464 (549)
T 3gme_A 418 MDK------FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVP---------------------------IKAAVAGI 464 (549)
T ss_dssp TTT------CCCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCC---------------------------CSSCCEEE
T ss_pred ccc------CCeEEEEEEEEEECCCCHHHHHHHHHHHHHHhCCCC---------------------------cccceeEE
Confidence 543 458999999999999999999999999999999877 44678899
Q ss_pred EEEEeCC----eEEeeCC
Q 030980 155 TLTKVPF----PLIVHNL 168 (168)
Q Consensus 155 T~~~~~~----~~vvDp~ 168 (168)
|++++++ .+++||+
T Consensus 465 s~Gli~~g~~~~iL~D~~ 482 (549)
T 3gme_A 465 AMGLVKEGDNYVVLSDIL 482 (549)
T ss_dssp EEEEEEETTEEEEEESCC
T ss_pred EEEEEcCCCceEEEecCC
Confidence 9999875 7888985
No 27
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans}
Probab=99.70 E-value=3.5e-19 Score=141.02 Aligned_cols=118 Identities=18% Similarity=0.137 Sum_probs=81.3
Q ss_pred CCCcEEEEEEEeeecCC-CCCCCCccEEEEEeeeCCCCCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCccccccceee
Q 030980 1 MGSTDVIASVKAELGRP-SAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVV 79 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p-~~~~p~~G~i~~~v~~s~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~~~LcI 79 (168)
+|+|+|+|+|+++...+ ..+.+++|.+ ++++.|+. +++.++ +++++|+|.|+ ..++++.+
T Consensus 26 ~G~T~Vl~~V~~~~e~~~~~~~~~~~~l--~v~~~p~~-----G~~~~~---e~~~li~r~l~-------~~i~~~~~-- 86 (222)
T 3krn_A 26 QGATCIWASCSGPGDVHASKASDEAMTL--DISYRANC-----GDNKFN---VLNNIIHSTLS-------NAINLELF-- 86 (222)
T ss_dssp BTTCEEECCCCSSCC---------------CCCSSCCC-----C--CCS---SCTTHHHHC---------CCSCC-----
T ss_pred ECCcEEEEEEECCCCCcccccCCceEEE--EEEEcCCC-----CCCCHH---HHHHHHHHHHH-------HhccHHhC--
Confidence 59999999999987533 3445666765 56777764 222222 78899999997 46777644
Q ss_pred ecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcEEEEEEEe
Q 030980 80 VEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159 (168)
Q Consensus 80 ~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi~vT~~~~ 159 (168)
| .|.|+|+++||++|||+++|++.|+.+||.++++| +.++|.++|++++
T Consensus 87 -p---~~~I~I~~~VL~~DG~~~~aai~aa~~AL~dagiP---------------------------~~~~v~avsvg~~ 135 (222)
T 3krn_A 87 -P---HTTISVTVHGIQDDGSMGAVAINGACFALLDNGMP---------------------------FETVFCGVLIVRV 135 (222)
T ss_dssp ------CCCCCCCEEEECCSCHHHHHHHGGGTTTTTTTCC---------------------------TTSCCCCCCCEEC
T ss_pred -C---CcEEEEEEEEEECCCChHHHHHHHHHHHHHHCCCC---------------------------ccCcEEEEEEEEE
Confidence 3 49999999999999999999999999999999887 3457788888888
Q ss_pred CCeEEeeCC
Q 030980 160 PFPLIVHNL 168 (168)
Q Consensus 160 ~~~~vvDp~ 168 (168)
++.+++||+
T Consensus 136 ~g~~llDpt 144 (222)
T 3krn_A 136 KDELIIDPT 144 (222)
T ss_dssp SSSEESSCC
T ss_pred CCEEEeCCC
Confidence 888888885
No 28
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.67 E-value=4.3e-16 Score=140.79 Aligned_cols=107 Identities=12% Similarity=0.076 Sum_probs=88.6
Q ss_pred CCCcEEEEEEEeeecCCC-----CCCCCccEEEEEeeeCCCCCCCCCC-CCcchhHHHHHHHHHHHHhcCCCCCCccccc
Q 030980 1 MGSTDVIASVKAELGRPS-----AMQPDKGKVAIFVDCSPTAEPTFEG-RGGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~-----~~~p~~G~i~~~v~~s~~~~~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~ 74 (168)
+|+|+|+|+|+.+-..|. ...+++|++.++++++|+++..+.. +.++.++.+++++++|.|+ .+++.
T Consensus 361 ~G~TkVl~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~~~P~st~er~~~g~~~~Reie~~~li~raL~-------~vI~~ 433 (726)
T 4aid_A 361 RGETQAIVVATLGTGDDEQFIDALEGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALR-------PMLPT 433 (726)
T ss_dssp ETTEEEEEEEEEECGGGSEEEEETTEEEEECEEEEEECCGGGGTCCCCCSSCCHHHHHHHHHHHHHHG-------GGSCC
T ss_pred eCCeEEEEEEEeCCCCcccccccccCCCceEEEEEEEeCCCcccccccCCCcchhhHHHHHHHHHHHH-------HhcCc
Confidence 499999999987655443 2246789999999999998876543 3467788999999999997 45653
Q ss_pred cceeeecCceEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCe
Q 030980 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120 (168)
Q Consensus 75 ~~LcI~~gk~~W~i~vdv~VL~~dGnl~Da~~lA~~aAL~~~~lP~ 120 (168)
. +++.|+|+||+.||++|||.++|++.|+..||+++++|.
T Consensus 434 ~------~~~P~tI~V~~~VLesDGs~~~AsI~aa~lAL~DAGIPm 473 (726)
T 4aid_A 434 K------EDFPYTIRLVSEITESNGSSSMATVCGSSLAMMDAGVPL 473 (726)
T ss_dssp T------TTCCCEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCC
T ss_pred c------ccCCeEEEEEEEEEEcCCcHHHHHHHHHHHHHHhcCCcc
Confidence 2 456799999999999999999999999999999999883
No 29
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.49 E-value=1e-13 Score=125.49 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=94.8
Q ss_pred CCCcEEEEEEEeeecCCCCCCCCccEEEEEeeeCCCCCC------CC--CCCCcchhHHHHHHHHHHHHhcCCCCCCccc
Q 030980 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEP------TF--EGRGGEELSAELSSALQHCLLGGKSGAGAGI 72 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~~~~p~~G~i~~~v~~s~~~~~------~~--~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~i 72 (168)
+|+|.|+|+++++. +|. |..+++-++|++.+.+.. +| +.+++++.+..++++|.|.|++
T Consensus 41 ~G~T~Vl~tv~~~~-~~~---~~~~f~pltv~y~ek~~a~g~ipg~f~kReGrpse~e~l~sRlIdR~lRp--------- 107 (723)
T 3cdi_A 41 MDDTAVFVTVVGQK-KAK---PGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRP--------- 107 (723)
T ss_dssp ETTEEEEEEEEECS-SCC---SSCCSCCEEEEEEECGGGGTCCCC-------CCCHHHHHHHHHHHHHHGG---------
T ss_pred ECCEEEEEEEEecC-CCC---CCCCeeeEEEEEeEeccccccCCCccccCCCCCChHHhHHHHHhCccchh---------
Confidence 59999999999994 443 345777788887765321 23 1235668899999999999982
Q ss_pred cccceeeecCceEEEEEEEEEEEcCCCCH-HH-HHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCC
Q 030980 73 DLSSLVVVEGKVCWDLYIDGLVISSDGNL-LD-ALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGV 150 (168)
Q Consensus 73 d~~~LcI~~gk~~W~i~vdv~VL~~dGnl-~D-a~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 150 (168)
++|..+.|.++|+++||++||+. +| ++.+|+.+||..+++| +...
T Consensus 108 ------lfp~~~~~~vqv~~~vls~Dg~~~~d~~ai~aAsaAL~~s~iP---------------------------~~~p 154 (723)
T 3cdi_A 108 ------LFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIP---------------------------FNGP 154 (723)
T ss_dssp ------GSCTTCCSCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTSS---------------------------CCCC
T ss_pred ------cccccCcceEEEEEEEEEcCCCCCHHHHHHHHHHHHHHhcCCC---------------------------CCCC
Confidence 35666779999999999999985 77 9999999999998887 2234
Q ss_pred cEEEEEEEeCCeEEeeCC
Q 030980 151 PVITTLTKVPFPLIVHNL 168 (168)
Q Consensus 151 Pi~vT~~~~~~~~vvDp~ 168 (168)
..+++++++++.+|+||+
T Consensus 155 v~av~vg~i~g~~v~nPt 172 (723)
T 3cdi_A 155 IGAARVGYINDQYVLNPT 172 (723)
T ss_dssp CCCEEEEEETTEEEESCC
T ss_pred eEEEEEEEECCEEEECcC
Confidence 678999999999999995
No 30
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.47 E-value=4.7e-13 Score=119.67 Aligned_cols=123 Identities=13% Similarity=0.055 Sum_probs=93.6
Q ss_pred CCCcEEEEEEEeeecCCCCCCCCccEEEEEeeeCCCCCC----CCCC--CCcchhHHHHHHHHHHHHhcCCCCCCccccc
Q 030980 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEP----TFEG--RGGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~~~~p~~G~i~~~v~~s~~~~~----~~~~--~~~~~~~~~l~~~l~~~l~~~~~~~~~~id~ 74 (168)
+|+|+|+|+|+++...|.. +..-|.++++..+.+.. +|.. +.+++.+..++++|.|.|+ ..+++
T Consensus 36 ~G~T~VL~tv~~~~~~~~~---df~pL~v~y~~~~~a~g~iPg~f~kRegrps~~e~lisRlIdR~lR-------p~~~~ 105 (630)
T 3u1k_A 36 SGDTAVMVTAVSKTKPSPS---QFMPLVVDYRQKAAAAGRIPTNYLRREVGTSDKEILTSRIIDRSIR-------PLFPA 105 (630)
T ss_dssp ETTEEEEEEEEECSSCCSS---SSCCEEEEEECSEETTTTEECTTC-----CCHHHHHHHHHHHHHHG-------GGSCT
T ss_pred ECCeEEEEEEEecCCCCCC---CeeEEEEEEEecccccCCCCccccccCCCCCHHHHHHHHHHhHHhh-------hcccc
Confidence 5999999999999874422 34447777776655431 2321 2366788999999999998 35553
Q ss_pred cceeeecCceEEEEEEEEEEEcCCCCH--HHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCCcE
Q 030980 75 SSLVVVEGKVCWDLYIDGLVISSDGNL--LDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPV 152 (168)
Q Consensus 75 ~~LcI~~gk~~W~i~vdv~VL~~dGnl--~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~Pi 152 (168)
.++|.+.|+++||++||+. ..|+..|+.+||.+..+| +.....
T Consensus 106 --------~~~~~~qI~~~VLs~Dg~~~~~~aai~aAs~AL~~s~iP---------------------------~~~~va 150 (630)
T 3u1k_A 106 --------GYFYDTQVLCNLLAVDGVNEPDVLAINGASVALSLSDIP---------------------------WNGPVG 150 (630)
T ss_dssp --------TCCCCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHSSSC---------------------------CCCCCE
T ss_pred --------cCCCceEEEEEEEECCCCCCHHHHHHHHHHHHHhccCCC---------------------------cCCCeE
Confidence 2468888999999999987 568888999999987777 345667
Q ss_pred EEEEEEeCCeEEeeCC
Q 030980 153 ITTLTKVPFPLIVHNL 168 (168)
Q Consensus 153 ~vT~~~~~~~~vvDp~ 168 (168)
+++++++++.+|+||+
T Consensus 151 av~vg~i~g~~vldPt 166 (630)
T 3u1k_A 151 AVRIGIIDGEYVVNPT 166 (630)
T ss_dssp EEEEEEETTEEEESCC
T ss_pred EEEEEEECCEEEECCC
Confidence 9999999999999995
No 31
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.22 E-value=1.3e-10 Score=105.17 Aligned_cols=121 Identities=19% Similarity=0.088 Sum_probs=89.5
Q ss_pred CCCcEEEEEEEeeecCCCCCCCCccEEEEEeeeC---------CCCCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCcc
Q 030980 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS---------PTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAG 71 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~~~~p~~G~i~~~v~~s---------~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 71 (168)
+|+|+|+|+++++...| +..+++-+.++.. |.....+++ ++++...+++++|.|.|+ ..
T Consensus 49 ~GdT~VL~tv~~~~~~~----~g~df~pltveY~ek~~a~G~iPg~~~~REG-rps~~~~li~RlIdR~lR-------pl 116 (726)
T 4aid_A 49 MGETVVLATAVFAKSQK----PGQDFFPLTVNYQEKTFAAGKIPGGFFKREG-RPSEKETLVSRLIDRPIR-------PL 116 (726)
T ss_dssp ETTEEEEEEEEECSSCC----TTCCSCCEEEEEEECGGGGTCCCCSTTCSCC-SCCHHHHHHHHHHHHHHG-------GG
T ss_pred ECCeEEEEEEEecCCCC----CCCCCcCceeeeeeehhhcccCCCcccCCCC-CCCchhhhHHHHhCCccc-------cc
Confidence 49999999999987533 2234533444432 333334443 455788999999999998 45
Q ss_pred ccccceeeecCceEEEEEEEEEEEcCCCC-HHHH-HHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCC
Q 030980 72 IDLSSLVVVEGKVCWDLYIDGLVISSDGN-LLDA-LGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSG 149 (168)
Q Consensus 72 id~~~LcI~~gk~~W~i~vdv~VL~~dGn-l~Da-~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 149 (168)
+++.. .|.+.|+++||++||+ .+|+ +.+|+.+||....+| +..
T Consensus 117 f~~~~--------~~evqI~~~Vls~Dg~~~~d~~ai~gAs~AL~~s~iP---------------------------~~~ 161 (726)
T 4aid_A 117 FVKGF--------KNEVQVVVTVLQHDLENDPDILGMVAASAALCLSGAP---------------------------FMG 161 (726)
T ss_dssp BCTTC--------CSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCS---------------------------BCC
T ss_pred cccCC--------ccceEEEEEEEecCCCCChhHHHHHHHHHHHHhcCCC---------------------------cCC
Confidence 66553 3668899999999875 6675 779999999987776 335
Q ss_pred CcEEEEEEEeCCeEEeeCC
Q 030980 150 VPVITTLTKVPFPLIVHNL 168 (168)
Q Consensus 150 ~Pi~vT~~~~~~~~vvDp~ 168 (168)
..-+++++++++.+|+||+
T Consensus 162 ~vaaV~Vg~i~g~~vldPt 180 (726)
T 4aid_A 162 PIGAARVGWVDGAYVLNPT 180 (726)
T ss_dssp CCEEEEEEEETTEEEESCC
T ss_pred CeEEEEEEEECCEEEECCC
Confidence 6778899999999999995
No 32
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.20 E-value=2e-10 Score=101.11 Aligned_cols=121 Identities=17% Similarity=0.130 Sum_probs=85.1
Q ss_pred CCCcEEEEEEEeeecCCCCCCCCccEEEEEeeeC---------CCCCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCcc
Q 030980 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS---------PTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAG 71 (168)
Q Consensus 1 lG~T~Vi~~Vk~ev~~p~~~~p~~G~i~~~v~~s---------~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 71 (168)
+|+|+|+|+++++-..| +..+++-++|+.. |.....+++ ++++....++++|.|.|+ ..
T Consensus 35 ~GdT~Vl~tv~~~~~~~----~g~df~Pltv~Y~e~~~a~G~iPg~~~~REG-rps~~~~l~~RlIdR~lR-------pl 102 (549)
T 3gme_A 35 MDDTAVFVTVVGQKKAK----PGQDFFPLTVNYQERTYAAGRIPGSFFRREG-RPSEGETLIARLIDRPIR-------PL 102 (549)
T ss_dssp ETTEEEEEEEEECSSCC----TTCCSCCEEEEEEECGGGTTCCCSCC------CCCHHHHHHHHHHHHHHG-------GG
T ss_pred ECCEEEEEEEEecCCCC----CCCCCccceeeeeeehhhcccCCCcCcCcCC-CCChhhhHHHHHhCCccc-------cc
Confidence 49999999999987533 2346744555543 222223333 455788999999999998 35
Q ss_pred ccccceeeecCceEEEEEEEEEEEcCCC-CHHHHH-HHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCC
Q 030980 72 IDLSSLVVVEGKVCWDLYIDGLVISSDG-NLLDAL-GAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSG 149 (168)
Q Consensus 72 id~~~LcI~~gk~~W~i~vdv~VL~~dG-nl~Da~-~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 149 (168)
+++.. .+.+.|+++||++|| |..|++ ..|+.+||....+| +..
T Consensus 103 fp~~~--------~~evqI~~~Vls~D~~~~pd~~ai~gAs~AL~~s~iP---------------------------~~g 147 (549)
T 3gme_A 103 FPEGF--------VNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIP---------------------------FNG 147 (549)
T ss_dssp SCTTC--------CSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHCSC---------------------------CCC
T ss_pred cccCC--------cccEEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCC---------------------------cCC
Confidence 65553 345788999999987 667754 79999999987776 334
Q ss_pred CcEEEEEEEeCCeEEeeCC
Q 030980 150 VPVITTLTKVPFPLIVHNL 168 (168)
Q Consensus 150 ~Pi~vT~~~~~~~~vvDp~ 168 (168)
..-+++++++++.+|+||+
T Consensus 148 pvaaV~Vg~i~g~~vlnPt 166 (549)
T 3gme_A 148 PIGAARVGYINDQYVLNPT 166 (549)
T ss_dssp CCEEEEEEEETTEEEESCC
T ss_pred CeeEEEEEEECCEEEECCC
Confidence 5667888888888888885
No 33
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.82 E-value=9.2e-08 Score=87.13 Aligned_cols=120 Identities=14% Similarity=0.072 Sum_probs=85.3
Q ss_pred CCcEEEEEEEeeecC-CC-CCCCCccEEEEEee-------eCCCCCCCCCCCCcchhHHHHHHHHHHHHhcCCCCCCccc
Q 030980 2 GSTDVIASVKAELGR-PS-AMQPDKGKVAIFVD-------CSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGI 72 (168)
Q Consensus 2 G~T~Vi~~Vk~ev~~-p~-~~~p~~G~i~~~v~-------~s~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~i 72 (168)
|+|+|+|++.++-.. |. ..-| |.++.. --|.....++++ +++.+..++++|.|.|+ ..+
T Consensus 60 G~T~Vl~tv~~~~~~~~~~df~p----Ltv~y~ek~~a~g~iPg~f~~REGr-ps~~e~l~~RlIdR~LR-------plf 127 (757)
T 1e3p_A 60 DDTMVLSATTASKNPKDQLDFFP----LTVDVEERMYAAGKIPGSFFRREGR-PSEDAILTCRLIDRPLR-------PSF 127 (757)
T ss_dssp TTEEEEEEEEEEEEECTTCSSCC----EEEEEEECGGGGTCCCCSTTSSCCS-CCHHHHHHHHHHHHHHG-------GGB
T ss_pred CCeEEEEEEEecCCCCCCCCCcc----EEEEEEecccccccCCCcccccCcC-CChHHHHHHHHHCCcch-------hcc
Confidence 899999999998663 32 1223 444443 112222233344 45678999999999998 456
Q ss_pred cccceeeecCceEEEEEEEEEEEcCCCC--HHHHHHHHHHHHHHhcCCCeEEecccccCCCCCceecCCcccccCCCCCC
Q 030980 73 DLSSLVVVEGKVCWDLYIDGLVISSDGN--LLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGV 150 (168)
Q Consensus 73 d~~~LcI~~gk~~W~i~vdv~VL~~dGn--l~Da~~lA~~aAL~~~~lP~v~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 150 (168)
++..+ -.+.|+++||++||+ ..-++..|+.+||....+| +...
T Consensus 128 p~~~~--------~evqv~~~Vls~D~~~~~~~~ai~gAs~AL~~s~iP---------------------------~~~~ 172 (757)
T 1e3p_A 128 KKGLR--------NEIQVVATIMALNPDHLYDVVAINAASASTQLAGLP---------------------------FSGP 172 (757)
T ss_dssp CTTBC--------EEEEEEEEEEECCTTSCCHHHHHHHHHHHHHHTTSS---------------------------BCCC
T ss_pred ccCCC--------CceEEEEEEEEECCCCCHHHHHHHHHHHHHhccCCC---------------------------CCCc
Confidence 65543 248899999999874 4888999999999987777 3344
Q ss_pred cEEEEEEEeCCeEEeeCC
Q 030980 151 PVITTLTKVPFPLIVHNL 168 (168)
Q Consensus 151 Pi~vT~~~~~~~~vvDp~ 168 (168)
--+++++++++.+|+||+
T Consensus 173 vaav~vg~~~g~~vlnPt 190 (757)
T 1e3p_A 173 IGGVRVALIRGQWVAFPT 190 (757)
T ss_dssp CEEEEEEEETTEEEESCC
T ss_pred eEEEEEEEECCEEEECCC
Confidence 567888989999999985
No 34
>3em5_A Beta-1,3-glucanase; glycoprotein, rossmann fold, (beta-alpha)8-TIM-barrel, glyco hydrolase, allergen; HET: NAG FUC MAN; 2.50A {Hevea brasiliensis} SCOP: c.1.8.3 PDB: 3f55_A*
Probab=25.59 E-value=38 Score=27.40 Aligned_cols=25 Identities=36% Similarity=0.332 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHHhcCCCeEEec
Q 030980 100 NLLDALGAAIKAALSNTGIPSVHVA 124 (168)
Q Consensus 100 nl~Da~~lA~~aAL~~~~lP~v~~~ 124 (168)
|+|||..=|+++||.....|.+.+.
T Consensus 213 nlfDa~~Da~~~Al~~~g~~~~~v~ 237 (316)
T 3em5_A 213 NLFDATLDALYSALERASGGSLEVV 237 (316)
T ss_dssp SHHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCCceE
Confidence 9999999999999999998876554
No 35
>3g9k_L Capsule biosynthesis protein CAPD; CAPD protein, the great lakes regional C excellence, GLRCE, capsule biogenesis/degradation; HET: GLU; 1.79A {Bacillus anthracis} PDB: 3ga9_L*
Probab=20.83 E-value=30 Score=28.12 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=14.4
Q ss_pred EEcCCCCHHHHHHHHHHH
Q 030980 94 VISSDGNLLDALGAAIKA 111 (168)
Q Consensus 94 VL~~dGnl~Da~~lA~~a 111 (168)
||..+||-+||++.++.+
T Consensus 37 iL~~GGNAvDAAVA~a~~ 54 (323)
T 3g9k_L 37 VLKNGGSAVDAAIVVSYV 54 (323)
T ss_dssp HHHTTCCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHH
Confidence 688999999998766543
Done!