Query 030981
Match_columns 168
No_of_seqs 138 out of 1277
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 11:38:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 4.1E-41 1.4E-45 216.6 0.5 74 2-75 1-74 (77)
2 3p57_A Myocyte-specific enhanc 100.0 5.7E-41 1.9E-45 220.9 0.9 79 2-80 1-79 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 7.2E-39 2.5E-43 214.3 -0.2 73 1-73 16-88 (100)
4 1hbx_A SRF, serum response fac 100.0 7.7E-39 2.6E-43 211.6 -0.8 71 1-71 10-80 (92)
5 1k6o_B SRF, serum response fac 100.0 4.7E-38 1.6E-42 211.6 -0.4 69 1-69 9-77 (103)
6 1j1d_C Troponin I, TNI; THIN f 92.1 1.2 4E-05 30.9 8.2 53 113-167 52-104 (133)
7 1ytz_T Troponin T; muscle, THI 89.4 0.68 2.3E-05 30.8 4.9 55 112-168 35-89 (107)
8 1j1d_B Troponin T, TNT; THIN f 89.0 0.66 2.2E-05 30.8 4.6 52 115-168 38-89 (106)
9 1j1e_C Troponin I, TNI; THIN f 87.2 2.8 9.4E-05 30.4 7.3 53 113-167 52-104 (180)
10 1ytz_I Troponin I; muscle, THI 78.6 12 0.00042 27.1 7.8 52 113-167 50-101 (182)
11 3nrf_A APAG protein; structura 69.0 1.1 3.9E-05 29.5 0.3 42 11-57 21-62 (106)
12 2ky6_A Mediator of RNA polymer 62.6 5 0.00017 28.5 2.6 36 36-71 116-159 (166)
13 3nmd_A CGMP dependent protein 59.2 23 0.0008 21.6 4.9 19 124-142 21-39 (72)
14 2oa5_A Hypothetical protein BQ 53.6 45 0.0015 22.0 7.7 58 85-142 8-67 (110)
15 1m2d_A [2Fe-2S] ferredoxin; th 52.4 8.7 0.0003 25.0 2.4 32 39-71 59-91 (110)
16 2v71_A Nuclear distribution pr 52.4 64 0.0022 23.4 9.1 6 55-60 3-8 (189)
17 1go4_E MAD1 (mitotic arrest de 49.8 15 0.0005 24.0 3.0 25 86-110 20-44 (100)
18 1ybx_A Conserved hypothetical 48.7 57 0.0019 22.6 6.1 67 87-161 43-132 (143)
19 1a93_B MAX protein, coiled coi 44.4 33 0.0011 17.7 3.4 23 88-110 10-32 (34)
20 2dfs_A Myosin-5A; myosin-V, in 42.6 1.2E+02 0.0042 27.9 9.0 16 147-162 1028-1043(1080)
21 2zvv_Y Cyclin-dependent kinase 41.2 7.4 0.00025 18.5 0.4 12 15-26 15-26 (26)
22 2yy0_A C-MYC-binding protein; 40.4 47 0.0016 18.8 3.9 24 85-108 19-42 (53)
23 2rpa_A Katanin P60 ATPase-cont 38.2 24 0.00082 21.8 2.6 35 29-74 16-50 (78)
24 3hvz_A Uncharacterized protein 35.9 20 0.00068 22.0 1.9 25 44-68 7-32 (78)
25 2l5g_A GPS2 protein, G protein 35.2 51 0.0017 17.3 3.4 22 121-142 10-31 (38)
26 1e52_A Excinuclease ABC subuni 34.1 73 0.0025 18.7 4.7 46 115-164 13-58 (63)
27 3rmq_A Uncharacterized protein 33.5 11 0.00036 25.1 0.4 13 33-45 30-42 (116)
28 3twe_A Alpha4H; unknown functi 30.7 48 0.0016 15.6 3.6 12 93-104 9-20 (27)
29 3gp4_A Transcriptional regulat 30.3 36 0.0012 23.2 2.7 9 33-41 6-14 (142)
30 3nzj_F Proteasome component C1 30.3 11 0.00037 29.2 0.0 21 36-56 3-23 (288)
31 3jrn_A AT1G72930 protein; TIR 29.8 24 0.00081 25.3 1.8 33 38-70 60-92 (176)
32 3h4p_A Proteasome subunit alph 28.9 13 0.00045 28.2 0.3 20 40-59 11-32 (264)
33 1m1j_B Fibrinogen beta chain; 28.9 97 0.0033 25.7 5.5 40 27-71 55-96 (464)
34 3sl9_C B-cell CLL/lymphoma 9 p 28.8 62 0.0021 17.9 3.0 22 112-133 3-24 (55)
35 1iru_G 20S proteasome; cell cy 27.3 14 0.00049 27.7 0.2 22 38-59 4-27 (254)
36 1ryp_E 20S proteasome; multica 26.9 13 0.00045 27.6 -0.1 15 44-58 3-19 (242)
37 1ryp_D 20S proteasome; multica 26.7 15 0.00051 27.3 0.3 17 42-58 3-21 (241)
38 2xdj_A Uncharacterized protein 25.8 65 0.0022 20.0 3.1 23 85-107 27-49 (83)
39 2phn_A F420-0:gamma-glutamyl l 25.0 11 0.00037 28.9 -0.9 27 34-60 138-164 (254)
40 3rrk_A V-type ATPase 116 kDa s 24.9 1.2E+02 0.0043 23.4 5.4 49 61-109 200-250 (357)
41 1ryp_B 20S proteasome; multica 24.9 17 0.00058 27.2 0.2 19 40-58 4-24 (250)
42 3gpv_A Transcriptional regulat 24.7 52 0.0018 22.5 2.7 13 31-43 18-30 (148)
43 2xus_A Breast cancer metastasi 24.4 1E+02 0.0034 17.2 4.2 16 151-166 27-42 (49)
44 2dm0_A Tyrosine-protein kinase 24.2 66 0.0022 21.1 3.1 42 33-74 52-104 (125)
45 1iru_B 20S proteasome; cell cy 23.9 18 0.00061 26.7 0.2 18 41-58 5-24 (233)
46 1iru_D 20S proteasome; cell cy 23.5 18 0.00063 27.0 0.2 17 42-58 4-22 (248)
47 2kmm_A Guanosine-3',5'-BIS(dip 23.4 54 0.0018 19.0 2.3 25 45-69 3-28 (73)
48 2k1v_A Insulin-like peptide IN 23.1 24 0.00081 17.0 0.5 9 32-40 14-22 (26)
49 2jmk_A Hypothetical protein TA 22.7 71 0.0024 20.5 2.8 34 40-73 63-104 (111)
50 1zps_A PRA-CH, phosphoribosyl- 22.5 23 0.00079 24.4 0.5 36 17-52 54-99 (138)
51 2ekx_A Cytoplasmic tyrosine-pr 21.9 80 0.0027 20.0 3.1 34 41-74 63-99 (110)
52 1g6u_A Domain swapped dimer; d 21.8 1E+02 0.0035 16.4 4.5 23 117-139 15-37 (48)
53 1dd4_C 50S ribosomal protein L 21.3 60 0.0021 17.2 2.0 22 114-135 8-29 (40)
54 2bzb_A Conserved domain protei 21.3 1.2E+02 0.0041 17.7 3.5 43 96-140 5-47 (62)
55 1yar_A Proteasome alpha subuni 21.2 23 0.00078 26.1 0.3 19 40-58 7-27 (233)
56 1ryp_A 20S proteasome; multica 21.2 19 0.00064 26.8 -0.2 17 42-58 4-22 (243)
57 1j8b_A YBAB; hypothetical prot 20.9 1.2E+02 0.0042 19.7 3.9 32 122-161 67-98 (112)
58 1ax8_A Obesity protein, leptin 20.6 1.9E+02 0.0065 20.0 4.9 56 48-110 41-96 (146)
59 1m1j_C Fibrinogen gamma chain; 20.5 3.4E+02 0.012 21.9 9.7 45 61-112 24-68 (409)
60 1iru_E 20S proteasome; cell cy 20.4 21 0.00071 26.5 -0.1 19 40-58 7-27 (241)
61 2vlg_A Sporulation kinase A; h 20.3 50 0.0017 20.9 1.8 26 41-67 8-33 (111)
62 1ryp_C 20S proteasome; multica 20.2 21 0.00072 26.4 -0.1 17 42-58 6-24 (244)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=4.1e-41 Score=216.56 Aligned_cols=74 Identities=47% Similarity=0.805 Sum_probs=70.3
Q ss_pred CccccceeEecCCCCcceeccccccchhhhhhhhccccCcceeeeeecCCCCcccccccchhhHHHHhhhcccc
Q 030981 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKD 75 (168)
Q Consensus 2 ~R~Ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~v~~ivfsp~gk~~~~~spsv~~il~ry~~~~~~ 75 (168)
||+||+|++|+|+++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+|+.||+||...+++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999987654
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=5.7e-41 Score=220.92 Aligned_cols=79 Identities=44% Similarity=0.742 Sum_probs=75.5
Q ss_pred CccccceeEecCCCCcceeccccccchhhhhhhhccccCcceeeeeecCCCCcccccccchhhHHHHhhhcccccccCC
Q 030981 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINS 80 (168)
Q Consensus 2 ~R~Ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~v~~ivfsp~gk~~~~~spsv~~il~ry~~~~~~~~~~~ 80 (168)
||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+|+.||+||...+++.....
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~~~ 79 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRT 79 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCEEC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999888766543
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=7.2e-39 Score=214.32 Aligned_cols=73 Identities=42% Similarity=0.654 Sum_probs=70.5
Q ss_pred CCccccceeEecCCCCcceeccccccchhhhhhhhccccCcceeeeeecCCCCcccccccchhhHHHHhhhcc
Q 030981 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKT 73 (168)
Q Consensus 1 M~R~Ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~v~~ivfsp~gk~~~~~spsv~~il~ry~~~~ 73 (168)
|||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|++|+|+||++..|+++|....
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~~ 88 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRN 88 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCCc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999996643
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=7.7e-39 Score=211.56 Aligned_cols=71 Identities=37% Similarity=0.549 Sum_probs=69.1
Q ss_pred CCccccceeEecCCCCcceeccccccchhhhhhhhccccCcceeeeeecCCCCcccccccchhhHHHHhhh
Q 030981 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK 71 (168)
Q Consensus 1 M~R~Ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~v~~ivfsp~gk~~~~~spsv~~il~ry~~ 71 (168)
|||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||++..+|++|..
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G 80 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG 80 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999997754
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=4.7e-38 Score=211.64 Aligned_cols=69 Identities=38% Similarity=0.570 Sum_probs=67.9
Q ss_pred CCccccceeEecCCCCcceeccccccchhhhhhhhccccCcceeeeeecCCCCcccccccchhhHHHHh
Q 030981 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERY 69 (168)
Q Consensus 1 M~R~Ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~v~~ivfsp~gk~~~~~spsv~~il~ry 69 (168)
|||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+|..+|+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999974
No 6
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=92.06 E-value=1.2 Score=30.85 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=41.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHhc
Q 030981 113 GDGLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKVIT 167 (168)
Q Consensus 113 ge~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~~~~~~~~~ll~~~i~~l~~k~~~ 167 (168)
+-+++++|.++|+++-..|...+..+.+-+ +++...-..-..+|..|..++..
T Consensus 52 pL~id~ls~~~L~e~~keLh~~I~~LEeEK--YDlE~kvkkq~yEI~dL~~rV~D 104 (133)
T 1j1d_C 52 PLELAGLGFAELQDLARQLHARVDKVDEER--YDIEAKVTKNITEIADLTQKIFD 104 (133)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHcchHHHHHHHHHHH
Confidence 457999999999999999999999999988 55554444444578888877653
No 7
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=89.35 E-value=0.68 Score=30.83 Aligned_cols=55 Identities=15% Similarity=0.087 Sum_probs=44.0
Q ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHhcC
Q 030981 112 LGDGLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKVITF 168 (168)
Q Consensus 112 ~ge~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~~~~~~~~~ll~~~i~~l~~k~~~l 168 (168)
-+-++++||.++|.++-..|...+..+.+-| ++|...-..-.-+|..|..++..|
T Consensus 35 ~pL~id~l~~~~L~e~~keLh~~I~~lEeEK--YDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 35 KPLNIDHLNEDKLRDKAKELWDWLYQLQTEK--YDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp CCCCCSSSCSSHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHhhhhHHHHHHHHHHHh
Confidence 3457999999999999999999999999998 555544444456899998887653
No 8
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=89.05 E-value=0.66 Score=30.84 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHhcC
Q 030981 115 GLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKVITF 168 (168)
Q Consensus 115 ~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~~~~~~~~~ll~~~i~~l~~k~~~l 168 (168)
++++||.++|.++-..|...+..+.+-| ++|...-..-.-+|..|..++..|
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEK--YDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEK--FDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHhhhHHHHHHHHHHHHh
Confidence 7899999999999999999999999988 555544444456899998887654
No 9
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=87.17 E-value=2.8 Score=30.43 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=40.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHhc
Q 030981 113 GDGLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKVIT 167 (168)
Q Consensus 113 ge~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~~~~~~~~~ll~~~i~~l~~k~~~ 167 (168)
+-++++||.++|.++-..|...+..+.+-+ +.|...-..-..+|..|..++..
T Consensus 52 PLnid~Lse~~L~e~ckELh~~I~~LEeEK--YDlE~kvkkqdyEI~dL~~rV~D 104 (180)
T 1j1e_C 52 PLELAGLGFAELQDLARQLHARVDKVDEER--YDIEAKVTKNITEIADLTQKIFD 104 (180)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHhcchhHHHHHHHHHH
Confidence 457899999999999999999999999988 45554333334578888777653
No 10
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=78.62 E-value=12 Score=27.07 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=40.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHhc
Q 030981 113 GDGLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKVIT 167 (168)
Q Consensus 113 ge~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~~~~~~~~~ll~~~i~~l~~k~~~ 167 (168)
+-++++ |.++|+++-..|...+..+.+-+ +.|......-..+|..|..++..
T Consensus 50 PLnid~-se~~L~e~ckELh~~I~~LEeEK--YDlE~kvkkq~yEI~dL~~rVnD 101 (182)
T 1ytz_I 50 PLSLPG-SMQELQELSKKLHAKIDSVDEER--YDTEVKLQKTNKELEDLSQKLFD 101 (182)
T ss_dssp CCCCCC-SHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTTTGG
T ss_pred CCCCCC-CHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHhhhHHHHHHHHHHHH
Confidence 457889 99999999999999999999998 55554444445578888776653
No 11
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=68.98 E-value=1.1 Score=29.55 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=32.2
Q ss_pred ecCCCCcceeccccccchhhhhhhhccccCcceeeeeecCCCCcccc
Q 030981 11 IENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF 57 (168)
Q Consensus 11 I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~v~~ivfsp~gk~~~~ 57 (168)
|.+......||.=.-..|.++.-+|+.+| ++.|+|.|+-|-.
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~l 62 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRL 62 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEe
Confidence 34455566677777788999999999777 9999999986543
No 12
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=62.56 E-value=5 Score=28.55 Aligned_cols=36 Identities=17% Similarity=0.504 Sum_probs=26.9
Q ss_pred ccccCcceeeeeecCCCCccc-cccc-------chhhHHHHhhh
Q 030981 36 SVLCDAEVALIIFSPRGKLYE-FSSC-------SINKTIERYQK 71 (168)
Q Consensus 36 s~LC~~~v~~ivfsp~gk~~~-~~sp-------sv~~il~ry~~ 71 (168)
+.-|++.|-+++|||+.+.|. |... .+..||+.++.
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~ 159 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQ 159 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 556999999999999999886 5443 36666666654
No 13
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=59.19 E-value=23 Score=21.56 Aligned_cols=19 Identities=26% Similarity=0.573 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 030981 124 LQQLENQLERSLSRIRARK 142 (168)
Q Consensus 124 L~~Le~~Le~~l~~Vr~RK 142 (168)
+.+|+..|......|+.+.
T Consensus 21 i~eLq~~L~~K~eELr~kd 39 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRD 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777777777777776665
No 14
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=53.64 E-value=45 Score=21.99 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=42.9
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHh--hCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 030981 85 DHSQHAKEETSNMMTKLEFLEVAKRKL--LGDGLEPCTIDELQQLENQLERSLSRIRARK 142 (168)
Q Consensus 85 ~~~~~l~~e~~kL~~~~e~l~~~~r~~--~ge~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK 142 (168)
...+.|..++.+|+-+|..|...++.- .+.+-.-|+..+=+.+....-.+|...-++|
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~K 67 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRK 67 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888999988888888766542 2245678999999999999999988888877
No 15
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=52.38 E-value=8.7 Score=25.04 Aligned_cols=32 Identities=16% Similarity=0.357 Sum_probs=22.9
Q ss_pred cCcceeeeeecCCCCccccccc-chhhHHHHhhh
Q 030981 39 CDAEVALIIFSPRGKLYEFSSC-SINKTIERYQK 71 (168)
Q Consensus 39 C~~~v~~ivfsp~gk~~~~~sp-sv~~il~ry~~ 71 (168)
|+---.|+|+ |+|..|...+| .+.+|++.+..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 5544445555 88888777776 79999998753
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=52.35 E-value=64 Score=23.39 Aligned_cols=6 Identities=50% Similarity=0.689 Sum_probs=2.8
Q ss_pred cccccc
Q 030981 55 YEFSSC 60 (168)
Q Consensus 55 ~~~~sp 60 (168)
+.|+||
T Consensus 3 ~~f~s~ 8 (189)
T 2v71_A 3 MDFSSL 8 (189)
T ss_dssp -CCSSH
T ss_pred CCCCCH
Confidence 446555
No 17
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=49.80 E-value=15 Score=23.98 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=16.2
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHH
Q 030981 86 HSQHAKEETSNMMTKLEFLEVAKRK 110 (168)
Q Consensus 86 ~~~~l~~e~~kL~~~~e~l~~~~r~ 110 (168)
.+..|..+..+|+++++.++..+-+
T Consensus 20 ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 20 KVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666667777777777766544
No 18
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=48.72 E-value=57 Score=22.56 Aligned_cols=67 Identities=12% Similarity=0.239 Sum_probs=43.9
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHh---------------hCC--------CCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 030981 87 SQHAKEETSNMMTKLEFLEVAKRKL---------------LGD--------GLEPCTIDELQQLENQLERSLSRIRARKF 143 (168)
Q Consensus 87 ~~~l~~e~~kL~~~~e~l~~~~r~~---------------~ge--------~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~ 143 (168)
...+-.+..+++++++.++.++... .|. +.+-+..+|...|+..|-.+++....+-
T Consensus 43 m~~mmkQAQkmQ~km~k~QeeL~~~eveg~sGgGlVkVtvnG~~ev~~I~Idp~lldpeD~E~LeDLI~aAvNdA~~ka- 121 (143)
T 1ybx_A 43 INNLVKQAQKMQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALRKA- 121 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEEEEETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEECHHHcCCcCHHHHHHHHHHHHHHHHHHH-
Confidence 4455556666777777777766552 111 1134555777888888888888888888
Q ss_pred cccccchhHHHHHHHHHH
Q 030981 144 RNLVFSQNQLFREQIEKL 161 (168)
Q Consensus 144 ~~~~~~~~~ll~~~i~~l 161 (168)
.+...+++..+
T Consensus 122 -------~e~~~e~M~~l 132 (143)
T 1ybx_A 122 -------DEMVTAEISKI 132 (143)
T ss_dssp -------HHHHHHHHHHH
T ss_pred -------HHHHHHHHHHH
Confidence 77777766554
No 19
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=44.43 E-value=33 Score=17.70 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=15.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHH
Q 030981 88 QHAKEETSNMMTKLEFLEVAKRK 110 (168)
Q Consensus 88 ~~l~~e~~kL~~~~e~l~~~~r~ 110 (168)
...+.++..|+.++..|+.+.|.
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHHHHh
Confidence 34566777777777777766553
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=42.62 E-value=1.2e+02 Score=27.88 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=8.0
Q ss_pred ccchhHHHHHHHHHHH
Q 030981 147 VFSQNQLFREQIEKLK 162 (168)
Q Consensus 147 ~~~~~~ll~~~i~~l~ 162 (168)
|.++++.|.++++.|.
T Consensus 1028 L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1028 LKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334455555555554
No 21
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=41.17 E-value=7.4 Score=18.50 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=8.7
Q ss_pred CCcceecccccc
Q 030981 15 TSRQVTFSKRRN 26 (168)
Q Consensus 15 ~~R~~tf~KRr~ 26 (168)
+.|++.|.||++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 567788888764
No 22
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.38 E-value=47 Score=18.78 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=17.0
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHH
Q 030981 85 DHSQHAKEETSNMMTKLEFLEVAK 108 (168)
Q Consensus 85 ~~~~~l~~e~~kL~~~~e~l~~~~ 108 (168)
.+++.|+.+...|+.+++.+...+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~ 42 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEEN 42 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777776554
No 23
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=38.19 E-value=24 Score=21.81 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=27.8
Q ss_pred hhhhhhhccccCcceeeeeecCCCCcccccccchhhHHHHhhhccc
Q 030981 29 LKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTK 74 (168)
Q Consensus 29 ~KKa~ELs~LC~~~v~~ivfsp~gk~~~~~spsv~~il~ry~~~~~ 74 (168)
.|+|.|.+.+++=|.|++.|. ++..-|.+|.....
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~-----------g~~~qI~k~l~~~~ 50 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ-----------GVLDQMNKYLYSVK 50 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH-----------HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHhcChHHHHHHHH-----------HHHHHHHHHHHhcC
Confidence 588999999999888888775 56677888877654
No 24
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=35.88 E-value=20 Score=22.04 Aligned_cols=25 Identities=12% Similarity=0.371 Sum_probs=19.1
Q ss_pred eeeeecCCCCccccccc-chhhHHHH
Q 030981 44 ALIIFSPRGKLYEFSSC-SINKTIER 68 (168)
Q Consensus 44 ~~ivfsp~gk~~~~~sp-sv~~il~r 68 (168)
-+.||.|+|.+.++|.. ++.+++..
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~~ 32 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAYA 32 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHHH
Confidence 36899999999999885 66666543
No 25
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=35.20 E-value=51 Score=17.27 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 030981 121 IDELQQLENQLERSLSRIRARK 142 (168)
Q Consensus 121 ~~eL~~Le~~Le~~l~~Vr~RK 142 (168)
++|...=...|+..+...++-|
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555
No 26
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=34.10 E-value=73 Score=18.71 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=30.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHH
Q 030981 115 GLEPCTIDELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEK 164 (168)
Q Consensus 115 ~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~~~~~~~~~ll~~~i~~l~~k 164 (168)
++..++.+++..+...|+..+...-+.- =+++-..++++|..|+..
T Consensus 13 ~~~~ls~~~~~~~i~~Le~~M~~AA~~l----eFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 13 VPMDMSPKALQQKIHELEGLMMQHAQNL----EFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp SSCCSCCSHHHHHHHHHHHHHHHHHHTT----CHHHHTTHHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777666554433 445566888888888765
No 27
>3rmq_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, zinc binding, unknown function; 1.85A {Saccharomonospora viridis} PDB: 3rms_A
Probab=33.47 E-value=11 Score=25.12 Aligned_cols=13 Identities=23% Similarity=0.439 Sum_probs=11.0
Q ss_pred hhhccccCcceee
Q 030981 33 FELSVLCDAEVAL 45 (168)
Q Consensus 33 ~ELs~LC~~~v~~ 45 (168)
..+.+|||++|-.
T Consensus 30 ~~ftaLCG~~VTp 42 (116)
T 3rmq_A 30 RPFTALCGETVTP 42 (116)
T ss_dssp CCEECTTSCEECC
T ss_pred CccccccCCeecC
Confidence 6789999999874
No 28
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=30.68 E-value=48 Score=15.55 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=4.6
Q ss_pred HhhhhHHHHHHH
Q 030981 93 ETSNMMTKLEFL 104 (168)
Q Consensus 93 e~~kL~~~~e~l 104 (168)
++..|++++..+
T Consensus 9 eledlqerlrkl 20 (27)
T 3twe_A 9 ELEDLQERLRKL 20 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333343333333
No 29
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=30.34 E-value=36 Score=23.19 Aligned_cols=9 Identities=22% Similarity=-0.086 Sum_probs=4.4
Q ss_pred hhhccccCc
Q 030981 33 FELSVLCDA 41 (168)
Q Consensus 33 ~ELs~LC~~ 41 (168)
+|+|-+||+
T Consensus 6 ~e~A~~~gv 14 (142)
T 3gp4_A 6 KEASEKSGV 14 (142)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHCc
Confidence 445555544
No 30
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=30.29 E-value=11 Score=29.20 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=15.7
Q ss_pred ccccCcceeeeeecCCCCccc
Q 030981 36 SVLCDAEVALIIFSPRGKLYE 56 (168)
Q Consensus 36 s~LC~~~v~~ivfsp~gk~~~ 56 (168)
|+-.+-|-++-+|||+|++|.
T Consensus 3 ~~~~~yd~~~t~fSP~Grl~Q 23 (288)
T 3nzj_F 3 SIGTGYDLSNSVFSPDGRNFQ 23 (288)
T ss_dssp --CCCTTSSTTCCCTTSCCHH
T ss_pred CCcCCccCCcccCCCCCchHH
Confidence 344566778889999999985
No 31
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=29.76 E-value=24 Score=25.29 Aligned_cols=33 Identities=6% Similarity=0.035 Sum_probs=25.8
Q ss_pred ccCcceeeeeecCCCCcccccccchhhHHHHhh
Q 030981 38 LCDAEVALIIFSPRGKLYEFSSCSINKTIERYQ 70 (168)
Q Consensus 38 LC~~~v~~ivfsp~gk~~~~~spsv~~il~ry~ 70 (168)
.-++.+++|||||+=-...||-..+..|++...
T Consensus 60 Ie~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~ 92 (176)
T 3jrn_A 60 IEVSRFAVVVVSENYAASSWCLDELVTIMDFEK 92 (176)
T ss_dssp CTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCEEEEEecCCcCCChhHHHHHHHHHhhhc
Confidence 467889999999986555677778888887754
No 32
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=28.92 E-value=13 Score=28.24 Aligned_cols=20 Identities=35% Similarity=0.865 Sum_probs=12.6
Q ss_pred CcceeeeeecCCCCccc--ccc
Q 030981 40 DAEVALIIFSPRGKLYE--FSS 59 (168)
Q Consensus 40 ~~~v~~ivfsp~gk~~~--~~s 59 (168)
+-|-++-+|||+|++|. |+.
T Consensus 11 ~yd~~~t~fSp~Grl~QvEYA~ 32 (264)
T 3h4p_A 11 AYDRAITVFSPEGRLYQVEYAR 32 (264)
T ss_dssp -----CCCCCSSSSCHHHHHHH
T ss_pred ccCCCcceECCCCeeHHHHhHH
Confidence 45777889999999994 654
No 33
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.86 E-value=97 Score=25.70 Aligned_cols=40 Identities=20% Similarity=0.144 Sum_probs=17.5
Q ss_pred chhhhhhhhccccCcceeeeeecCCCCccccccc--chhhHHHHhhh
Q 030981 27 GLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC--SINKTIERYQK 71 (168)
Q Consensus 27 gL~KKa~ELs~LC~~~v~~ivfsp~gk~~~~~sp--sv~~il~ry~~ 71 (168)
|+-||..|.. -||+-|.+ +++..=.||+. .+.+.|.+|..
T Consensus 55 ~~~~~~~~~~--~~a~~c~~---~~~~~G~~CPTtC~l~D~L~k~q~ 96 (464)
T 1m1j_B 55 QAMKKGPIIY--PDAGGCKH---PLDELGVLCPTGCELQTTLLKQEK 96 (464)
T ss_dssp --------CC--CCCSCEEC---SSTTTCEEEECTTHHHHHHHHHHH
T ss_pred hhhccCcccC--CCCCCccc---cCCCccCcCCCccHHHHHHHHhhh
Confidence 4556666665 56665544 44444445532 46666766655
No 34
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=28.81 E-value=62 Score=17.94 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=15.1
Q ss_pred hCCCCCCCCHHHHHHHHHHHHH
Q 030981 112 LGDGLEPCTIDELQQLENQLER 133 (168)
Q Consensus 112 ~ge~l~~Ls~~eL~~Le~~Le~ 133 (168)
+|++-++||-++|..-+..|..
T Consensus 3 ~~~n~~gls~eqlehrerslqt 24 (55)
T 3sl9_C 3 LGENPDGLSQEQLEHRERSLQT 24 (55)
T ss_dssp ----CCCCCHHHHHHHHHHHHH
T ss_pred cccCCcccCHHHHHHHHHHHHH
Confidence 5788999999999888777654
No 35
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=27.27 E-value=14 Score=27.72 Aligned_cols=22 Identities=18% Similarity=0.519 Sum_probs=16.3
Q ss_pred ccCcceeeeeecCCCCccc--ccc
Q 030981 38 LCDAEVALIIFSPRGKLYE--FSS 59 (168)
Q Consensus 38 LC~~~v~~ivfsp~gk~~~--~~s 59 (168)
-.+=|-++-+|||.|++|. |+.
T Consensus 4 ~~~yd~~~t~fsp~Grl~QvEyA~ 27 (254)
T 1iru_G 4 GTGYDLSASTFSPDGRVFQVEYAM 27 (254)
T ss_dssp CSSTTSCTTCCCTTSCCHHHHHHH
T ss_pred ccccCCCCccCCcCCccHHHHhHH
Confidence 3455677789999999984 643
No 36
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=26.89 E-value=13 Score=27.60 Aligned_cols=15 Identities=40% Similarity=0.988 Sum_probs=11.8
Q ss_pred eeeeecCCCCccc--cc
Q 030981 44 ALIIFSPRGKLYE--FS 58 (168)
Q Consensus 44 ~~ivfsp~gk~~~--~~ 58 (168)
++-+|||+|++|. |+
T Consensus 3 ~~t~fsp~Grl~QvEyA 19 (242)
T 1ryp_E 3 GVSTFSPEGRLFQVEYS 19 (242)
T ss_dssp CTTCBCTTSCBHHHHHH
T ss_pred CCceECCCCcChHHHhH
Confidence 4568999999884 64
No 37
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=26.73 E-value=15 Score=27.26 Aligned_cols=17 Identities=41% Similarity=0.956 Sum_probs=13.3
Q ss_pred ceeeeeecCCCCccc--cc
Q 030981 42 EVALIIFSPRGKLYE--FS 58 (168)
Q Consensus 42 ~v~~ivfsp~gk~~~--~~ 58 (168)
|-++-+|||+|++|. |+
T Consensus 3 d~~~t~fsp~Grl~QvEya 21 (241)
T 1ryp_D 3 DRALSIFSPDGHIFQVEYA 21 (241)
T ss_dssp CCCCSCCBTTTBCHHHHHH
T ss_pred CCCceeECCCCcchHHHHH
Confidence 456779999999984 64
No 38
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=25.79 E-value=65 Score=20.04 Aligned_cols=23 Identities=0% Similarity=0.075 Sum_probs=14.9
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHH
Q 030981 85 DHSQHAKEETSNMMTKLEFLEVA 107 (168)
Q Consensus 85 ~~~~~l~~e~~kL~~~~e~l~~~ 107 (168)
..++.++.++..|+..++.+.-.
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~ 49 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQ 49 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 34566777777777777665543
No 39
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=24.99 E-value=11 Score=28.86 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=21.7
Q ss_pred hhccccCcceeeeeecCCCCccccccc
Q 030981 34 ELSVLCDAEVALIIFSPRGKLYEFSSC 60 (168)
Q Consensus 34 ELs~LC~~~v~~ivfsp~gk~~~~~sp 60 (168)
+|.-.+|++|+|||+.+.|+++..+.+
T Consensus 138 ~l~~~~G~~v~ViI~Dt~gr~~r~g~~ 164 (254)
T 2phn_A 138 RILELTGKRVGVIITDTNGRCFRRGVV 164 (254)
T ss_dssp HHHHHHSCCCEEEEEEEEEETTEEEEE
T ss_pred HHHHHHCCCEEEEEEcCCCchhhccCc
Confidence 344568999999999999988876665
No 40
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=24.87 E-value=1.2e+02 Score=23.45 Aligned_cols=49 Identities=8% Similarity=-0.046 Sum_probs=25.2
Q ss_pred chhhHHHHhhhcccccccCCc--chhhhhHHHHHHhhhhHHHHHHHHHHHH
Q 030981 61 SINKTIERYQKKTKDIGINSK--IVEDHSQHAKEETSNMMTKLEFLEVAKR 109 (168)
Q Consensus 61 sv~~il~ry~~~~~~~~~~~~--~~~~~~~~l~~e~~kL~~~~e~l~~~~r 109 (168)
.+..|++.|.-..-.-..... .....+..++.++..+...++.++.++.
T Consensus 200 ~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~ 250 (357)
T 3rrk_A 200 AARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVA 250 (357)
T ss_dssp HHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677766543222111011 1123456667777777777666665543
No 41
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=24.85 E-value=17 Score=27.18 Aligned_cols=19 Identities=37% Similarity=0.632 Sum_probs=14.6
Q ss_pred CcceeeeeecCCCCccc--cc
Q 030981 40 DAEVALIIFSPRGKLYE--FS 58 (168)
Q Consensus 40 ~~~v~~ivfsp~gk~~~--~~ 58 (168)
+-|-++-+|||+|++|. |+
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA 24 (250)
T 1ryp_B 4 RYSFSLTTFSPSGKLGQIDYA 24 (250)
T ss_dssp CCCSBSSCBCTTSCBHHHHHH
T ss_pred cccCCceeECCCCccHHHHhH
Confidence 34667789999999984 64
No 42
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=24.65 E-value=52 Score=22.48 Aligned_cols=13 Identities=0% Similarity=-0.008 Sum_probs=6.8
Q ss_pred hhhhhccccCcce
Q 030981 31 KAFELSVLCDAEV 43 (168)
Q Consensus 31 Ka~ELs~LC~~~v 43 (168)
+.+|+|-+||+-+
T Consensus 18 ~I~evA~~~gvs~ 30 (148)
T 3gpv_A 18 TIGQVAKMQHLTI 30 (148)
T ss_dssp CHHHHHHHTTCCH
T ss_pred eHHHHHHHHCcCH
Confidence 3455555555543
No 43
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=24.42 E-value=1e+02 Score=17.22 Aligned_cols=16 Identities=31% Similarity=0.696 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHh
Q 030981 151 NQLFREQIEKLKEKVI 166 (168)
Q Consensus 151 ~~ll~~~i~~l~~k~~ 166 (168)
++++.+.+.+++++..
T Consensus 27 EqlY~ERl~ql~~~Le 42 (49)
T 2xus_A 27 EKLFRERLSQLRLRLE 42 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777888888877654
No 44
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.22 E-value=66 Score=21.06 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=27.5
Q ss_pred hhhcccc--------CcceeeeeecCCCCcccccc---cchhhHHHHhhhccc
Q 030981 33 FELSVLC--------DAEVALIIFSPRGKLYEFSS---CSINKTIERYQKKTK 74 (168)
Q Consensus 33 ~ELs~LC--------~~~v~~ivfsp~gk~~~~~s---psv~~il~ry~~~~~ 74 (168)
.=||+.+ .+.-..|...++|..+.... +++.++|+-|...+.
T Consensus 52 y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~eLV~~y~~~~~ 104 (125)
T 2dm0_A 52 YTISVFMGARRSTEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQHNAA 104 (125)
T ss_dssp EEEEEECCCSSSSSCCEEEEEEEECTTCCEESSSSCCCSSHHHHHHHHTTCCC
T ss_pred EEEEEEeccccCCCCcEEEEEEEEcCCCCEEECCCCccCCHHHHHHHhhhCCC
Confidence 4566766 34455565667776554332 589999999988653
No 45
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=23.94 E-value=18 Score=26.66 Aligned_cols=18 Identities=39% Similarity=0.726 Sum_probs=14.1
Q ss_pred cceeeeeecCCCCccc--cc
Q 030981 41 AEVALIIFSPRGKLYE--FS 58 (168)
Q Consensus 41 ~~v~~ivfsp~gk~~~--~~ 58 (168)
-|-.+-+|||+|++|. |+
T Consensus 5 yd~~~t~fsp~Grl~QvEya 24 (233)
T 1iru_B 5 YSFSLTTFSPSGKLVQIEYA 24 (233)
T ss_dssp CCSBSCCCCTTSCCHHHHHH
T ss_pred ccCCceeECCCCeEehhHhH
Confidence 3566789999999984 64
No 46
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=23.53 E-value=18 Score=26.95 Aligned_cols=17 Identities=35% Similarity=0.962 Sum_probs=13.1
Q ss_pred ceeeeeecCCCCccc--cc
Q 030981 42 EVALIIFSPRGKLYE--FS 58 (168)
Q Consensus 42 ~v~~ivfsp~gk~~~--~~ 58 (168)
|-.+-+|||+|++|. |+
T Consensus 4 d~~~t~fsp~Grl~QvEYA 22 (248)
T 1iru_D 4 DRAITVFSPDGHLFQVEYA 22 (248)
T ss_dssp CCCCSCCCTTSCCHHHHHH
T ss_pred cCCCceECCCCcchHHHHH
Confidence 445678999999984 64
No 47
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=23.42 E-value=54 Score=18.96 Aligned_cols=25 Identities=12% Similarity=0.375 Sum_probs=19.2
Q ss_pred eeeecCCCCccccccc-chhhHHHHh
Q 030981 45 LIIFSPRGKLYEFSSC-SINKTIERY 69 (168)
Q Consensus 45 ~ivfsp~gk~~~~~sp-sv~~il~ry 69 (168)
+.|+-|+|+..+|+.+ ++.+++..+
T Consensus 3 i~i~~p~g~~~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGATALDFAYSL 28 (73)
T ss_dssp EEEECTTCCEEEECTTCBHHHHHHHH
T ss_pred EEEEcCCCCEEEcCCCCcHHHHHHHH
Confidence 4567789999888875 677787776
No 48
>2k1v_A Insulin-like peptide INSL5; peptide hormone, relaxin-3, chimera, cleavage on PAIR of basic residues, secreted, signaling protein; HET: PCA; NMR {Synthetic} PDB: 2kbc_A*
Probab=23.10 E-value=24 Score=16.98 Aligned_cols=9 Identities=44% Similarity=0.818 Sum_probs=6.7
Q ss_pred hhhhccccC
Q 030981 32 AFELSVLCD 40 (168)
Q Consensus 32 a~ELs~LC~ 40 (168)
-+|||.||.
T Consensus 14 msDLs~lC~ 22 (26)
T 2k1v_A 14 MTDLSALCX 22 (26)
T ss_dssp HHHHTTTC-
T ss_pred HHHHHHHHh
Confidence 378999995
No 49
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=22.70 E-value=71 Score=20.47 Aligned_cols=34 Identities=29% Similarity=0.519 Sum_probs=25.3
Q ss_pred CcceeeeeecCCCCccc--cccc------chhhHHHHhhhcc
Q 030981 40 DAEVALIIFSPRGKLYE--FSSC------SINKTIERYQKKT 73 (168)
Q Consensus 40 ~~~v~~ivfsp~gk~~~--~~sp------sv~~il~ry~~~~ 73 (168)
|--|+.||.+.+.|+.+ |+.- +++.++.+|++..
T Consensus 63 DKTvGFvviN~dKK~mSvsFsd~~~~~K~~i~ei~kkykd~G 104 (111)
T 2jmk_A 63 DKTVGFVVVNADKKLMSVSFSDIDENMKKVIKATAEKFKNKG 104 (111)
T ss_dssp CEEEEEEEEETTTTEEEEEECSCCTTHHHHHHHHHHHGGGGC
T ss_pred CceeEEEEEecCCeEEEEEeehhhhhHHHHHHHHHHHhhcCC
Confidence 44588999999988775 5542 5888899998753
No 50
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=22.54 E-value=23 Score=24.40 Aligned_cols=36 Identities=19% Similarity=0.444 Sum_probs=27.2
Q ss_pred cceec-cccccch---------hhhhhhhccccCcceeeeeecCCC
Q 030981 17 RQVTF-SKRRNGL---------LKKAFELSVLCDAEVALIIFSPRG 52 (168)
Q Consensus 17 R~~tf-~KRr~gL---------~KKa~ELs~LC~~~v~~ivfsp~g 52 (168)
+.+|| |+=|..| +-+..|+.+-||-|+-++..-|.|
T Consensus 54 g~~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~LL~~V~q~G 99 (138)
T 1zps_A 54 GTAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKVEQEG 99 (138)
T ss_dssp SBCEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEEEEEEEESS
T ss_pred CcEEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEEEEEEEecC
Confidence 34444 6656644 556789999999999999998877
No 51
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=21.89 E-value=80 Score=20.01 Aligned_cols=34 Identities=24% Similarity=0.164 Sum_probs=22.5
Q ss_pred cceeeeeecCCCCcccccc---cchhhHHHHhhhccc
Q 030981 41 AEVALIIFSPRGKLYEFSS---CSINKTIERYQKKTK 74 (168)
Q Consensus 41 ~~v~~ivfsp~gk~~~~~s---psv~~il~ry~~~~~ 74 (168)
+.-..|...++|..+.... +++.++|+-|...+.
T Consensus 63 v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~~ 99 (110)
T 2ekx_A 63 VKHYHVHTNAENKLYLAENYCFDSIPKLIHYHQHNSA 99 (110)
T ss_dssp CEEEECEECTTCCEESSTTCCCSCHHHHHHHHHHSCC
T ss_pred EEEEEEEECCCCCEEECCCCccCCHHHHHHHHeeCCC
Confidence 4445555566776554332 589999999988763
No 52
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.84 E-value=1e+02 Score=16.36 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=16.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 030981 117 EPCTIDELQQLENQLERSLSRIR 139 (168)
Q Consensus 117 ~~Ls~~eL~~Le~~Le~~l~~Vr 139 (168)
++.|.+||-.||..|...-+...
T Consensus 15 egfspeelaaleselqalekkla 37 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLA 37 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Confidence 57889999988877665444333
No 53
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=21.34 E-value=60 Score=17.25 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=17.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q 030981 114 DGLEPCTIDELQQLENQLERSL 135 (168)
Q Consensus 114 e~l~~Ls~~eL~~Le~~Le~~l 135 (168)
+.+.+||+-|+.+|-+.|+...
T Consensus 8 e~i~~lTvlE~~eLvk~leekf 29 (40)
T 1dd4_C 8 EAIEKLTVSELAELVKKLEDKF 29 (40)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHhCcHHHHHHHHHHHHHHH
Confidence 3467899999999999998754
No 54
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=21.28 E-value=1.2e+02 Score=17.67 Aligned_cols=43 Identities=12% Similarity=0.197 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 030981 96 NMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRA 140 (168)
Q Consensus 96 kL~~~~e~l~~~~r~~~ge~l~~Ls~~eL~~Le~~Le~~l~~Vr~ 140 (168)
.|..+|+..+.++-.+... .|++-++...+.+.||..+...-.
T Consensus 5 ~L~~~IE~kR~eL~~l~~k--~Gl~~~~vI~~SQeLD~LIn~Y~k 47 (62)
T 2bzb_A 5 QLKNKIENKKKELIQLVAR--HGLDHDKVLLFSRDLDKLINKFMN 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443332221 378888999999999998877654
No 55
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=21.23 E-value=23 Score=26.06 Aligned_cols=19 Identities=32% Similarity=0.810 Sum_probs=11.0
Q ss_pred CcceeeeeecCCCCccc--cc
Q 030981 40 DAEVALIIFSPRGKLYE--FS 58 (168)
Q Consensus 40 ~~~v~~ivfsp~gk~~~--~~ 58 (168)
+=|-.+-+|||+|++|. |+
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya 27 (233)
T 1yar_A 7 AYSRAITVFSPDGRLFQVEYA 27 (233)
T ss_dssp ------CCCCTTSCCHHHHHH
T ss_pred cCCCCCceECcCCeeHHHHhH
Confidence 34667789999999984 64
No 56
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=21.21 E-value=19 Score=26.76 Aligned_cols=17 Identities=41% Similarity=1.024 Sum_probs=13.2
Q ss_pred ceeeeeecCCCCccc--cc
Q 030981 42 EVALIIFSPRGKLYE--FS 58 (168)
Q Consensus 42 ~v~~ivfsp~gk~~~--~~ 58 (168)
|-.+-+|||+|++|. |+
T Consensus 4 d~~~t~fsp~Grl~QvEYA 22 (243)
T 1ryp_A 4 DRHITIFSPEGRLYQVEYA 22 (243)
T ss_dssp GGTSSSCCTTSCCHHHHHH
T ss_pred CCCCceECCCCeeHHHHHH
Confidence 455678999999984 64
No 57
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=20.89 E-value=1.2e+02 Score=19.75 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHH
Q 030981 122 DELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKL 161 (168)
Q Consensus 122 ~eL~~Le~~Le~~l~~Vr~RK~~~~~~~~~~ll~~~i~~l 161 (168)
+|...|+..|-.+++....+- .+...+++..+
T Consensus 67 ~d~E~LedlI~aA~ndA~~ka--------~~~~~e~m~~~ 98 (112)
T 1j8b_A 67 DDKEMLEDLIAAAFNDAVRRA--------EELQKEKMASV 98 (112)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 677778888888888888877 77766666543
No 58
>1ax8_A Obesity protein, leptin; helical cytokine, hematopoietic factor, diabetes, C; 2.40A {Homo sapiens} SCOP: a.26.1.1
Probab=20.56 E-value=1.9e+02 Score=19.98 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=38.4
Q ss_pred ecCCCCcccccccchhhHHHHhhhcccccccCCcchhhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 030981 48 FSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRK 110 (168)
Q Consensus 48 fsp~gk~~~~~spsv~~il~ry~~~~~~~~~~~~~~~~~~~~l~~e~~kL~~~~e~l~~~~r~ 110 (168)
|-|+.++. -+.++|.++++=|++.-...++ .++..+.+++.+|+.-++.+...+++
T Consensus 41 fiP~~~pi-~gLssm~~TL~~yQ~iL~sLp~------~~v~QI~~DlsnLr~lL~~l~~s~~C 96 (146)
T 1ax8_A 41 FIPGLHPI-LTLSKMDQTLAVYQQILTSMPS------RNVIQISNDLENLRDLLHVLAFSKSC 96 (146)
T ss_dssp SCCCSSCC-SSHHHHHHHHHHHHHHHHTSCC------HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCcCCCcc-ccHHHHHHHHHHHHHHHhcCCc------ccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 66776544 2446899999999997443332 45677788888888877776665444
No 59
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.46 E-value=3.4e+02 Score=21.95 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=23.2
Q ss_pred chhhHHHHhhhcccccccCCcchhhhhHHHHHHhhhhHHHHHHHHHHHHHhh
Q 030981 61 SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLL 112 (168)
Q Consensus 61 sv~~il~ry~~~~~~~~~~~~~~~~~~~~l~~e~~kL~~~~e~l~~~~r~~~ 112 (168)
.+.+.|.+|......+ -..++..-.++..+......+-..+...+
T Consensus 24 ~i~d~L~k~e~~V~~~-------l~~LE~~l~elsn~ts~v~~Lvk~iq~~~ 68 (409)
T 1m1j_C 24 GIADFFNKYRLTTDGE-------LLEIEGLLQQATNSTGSIEYLIQHIKTIY 68 (409)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHhcchhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6999999998743321 02233344444444444444444443333
No 60
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=20.38 E-value=21 Score=26.47 Aligned_cols=19 Identities=26% Similarity=0.754 Sum_probs=14.0
Q ss_pred CcceeeeeecCCCCccc--cc
Q 030981 40 DAEVALIIFSPRGKLYE--FS 58 (168)
Q Consensus 40 ~~~v~~ivfsp~gk~~~--~~ 58 (168)
+=|-.+-+|||+|++|. |+
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya 27 (241)
T 1iru_E 7 EYDRGVNTFSPEGRLFQVEYD 27 (241)
T ss_dssp -CCCCTTCBCTTSCBHHHHHH
T ss_pred CCCCCCceECCCCccHHHHHH
Confidence 34666779999999983 64
No 61
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=20.27 E-value=50 Score=20.88 Aligned_cols=26 Identities=8% Similarity=0.086 Sum_probs=17.1
Q ss_pred cceeeeeecCCCCcccccccchhhHHH
Q 030981 41 AEVALIIFSPRGKLYEFSSCSINKTIE 67 (168)
Q Consensus 41 ~~v~~ivfsp~gk~~~~~spsv~~il~ 67 (168)
+.-++++.+++| .+.|.||++..++.
T Consensus 8 ~~d~i~v~d~~G-~i~yvn~~~~~~lG 33 (111)
T 2vlg_A 8 KTDIHAVLASNG-RIIYISANSKLHLG 33 (111)
T ss_dssp -CCEEEEECTTS-BEEEECTTHHHHHS
T ss_pred CCCEEEEEcCCC-eEEEEChHHHHHhC
Confidence 344567778887 46688887766543
No 62
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=20.17 E-value=21 Score=26.45 Aligned_cols=17 Identities=41% Similarity=0.968 Sum_probs=13.5
Q ss_pred ceeeeeecCCCCccc--cc
Q 030981 42 EVALIIFSPRGKLYE--FS 58 (168)
Q Consensus 42 ~v~~ivfsp~gk~~~--~~ 58 (168)
|-.+-+|||+|++|. |+
T Consensus 6 d~~~t~fsp~Grl~QvEyA 24 (244)
T 1ryp_C 6 DSRTTIFSPEGRLYQVEYA 24 (244)
T ss_dssp CCCTTCBCTTSCBHHHHHH
T ss_pred CCCCceECcCCeeHHHHhH
Confidence 556778999999984 65
Done!