Query 030982
Match_columns 168
No_of_seqs 107 out of 226
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 11:39:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 42.8 94 0.0032 23.5 7.3 21 86-106 115-135 (194)
2 3syn_E ATP-binding protein YLX 36.8 14 0.00047 18.7 1.0 10 154-163 12-21 (23)
3 3sjd_D Golgi to ER traffic pro 23.9 33 0.0011 20.5 1.3 11 154-164 20-30 (46)
4 2k9u_B Filamin-binding LIM pro 22.4 6.8 0.00023 20.7 -1.7 10 1-10 1-10 (26)
5 2vqe_T 30S ribosomal protein S 21.3 35 0.0012 24.0 1.3 15 1-15 6-21 (106)
6 3zs9_C Golgi to ER traffic pro 18.8 76 0.0026 18.2 2.1 11 154-164 10-20 (38)
7 1pp9_G Ubiquinol-cytochrome C 16.0 1E+02 0.0035 20.4 2.6 39 88-133 23-61 (81)
8 2rfp_A Putative NTP pyrophosph 15.6 56 0.0019 24.9 1.3 20 63-82 126-149 (171)
9 2v2f_A Penicillin binding prot 14.2 49 0.0017 16.7 0.5 11 72-82 9-19 (26)
10 3lxu_X Tripeptidyl-peptidase 2 13.1 66 0.0023 32.0 1.4 22 70-91 30-54 (1354)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=42.76 E-value=94 Score=23.50 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=10.5
Q ss_pred CCCCcchhHHHHHHHHHHHHH
Q 030982 86 MSTGGICGYLHDVIYITSFVQ 106 (168)
Q Consensus 86 L~~~Gl~ey~~Diiylt~~v~ 106 (168)
|-+.|+..|.=-=.|+..++.
T Consensus 115 Lvt~G~y~~vRHP~Y~G~~l~ 135 (194)
T 4a2n_B 115 LVKEGIYKNIRHPMYAHLWLW 135 (194)
T ss_dssp CCCSSTTTTBSSHHHHHHHHH
T ss_pred eeecCcchhccCccHHHHHHH
Confidence 333445555555555554443
No 2
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=36.78 E-value=14 Score=18.65 Aligned_cols=10 Identities=50% Similarity=0.644 Sum_probs=6.6
Q ss_pred HHHHHHHhhc
Q 030982 154 KREKMEKKTS 163 (168)
Q Consensus 154 rq~K~Ekr~~ 163 (168)
-+.|||||.+
T Consensus 12 lrakmekrer 21 (23)
T 3syn_E 12 LRAKMEKRER 21 (26)
T ss_pred HHHHHHHHhh
Confidence 4667777754
No 3
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=23.92 E-value=33 Score=20.52 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=5.1
Q ss_pred HHHHHHHhhcc
Q 030982 154 KREKMEKKTSR 164 (168)
Q Consensus 154 rq~K~Ekr~~k 164 (168)
++-.+|||++|
T Consensus 20 aRLrRERR~aK 30 (46)
T 3sjd_D 20 RRLLRERRQKK 30 (46)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444555444
No 4
>2k9u_B Filamin-binding LIM protein 1; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=22.42 E-value=6.8 Score=20.71 Aligned_cols=10 Identities=30% Similarity=0.368 Sum_probs=6.9
Q ss_pred CCchhHhhHH
Q 030982 1 MANQGAKKRK 10 (168)
Q Consensus 1 MA~~s~Kk~a 10 (168)
||++.+|+.+
T Consensus 1 ma~kpeKR~a 10 (26)
T 2k9u_B 1 MASKPEKRVA 10 (26)
T ss_dssp CCCCSSSSCE
T ss_pred CCCcchhhee
Confidence 7777777653
No 5
>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.7.6.1 PDB: 1gix_W* 1hnw_T* 1hnx_T* 1hnz_T* 1hr0_T 1j5e_T 1jgo_W* 1jgp_W* 1jgq_W* 1ml5_W* 1yl4_W 2b64_T* 2b9m_T* 2b9o_T* 2f4v_T* 2ow8_u* 2qnh_u* 2uxb_T* 1fjg_T* 2uxd_T* ...
Probab=21.29 E-value=35 Score=24.01 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=9.8
Q ss_pred CCc-hhHhhHHHHHHH
Q 030982 1 MAN-QGAKKRKEENAR 15 (168)
Q Consensus 1 MA~-~s~Kk~a~~N~~ 15 (168)
||| +|++|+...|+.
T Consensus 6 MAN~KSA~KRirq~ek 21 (106)
T 2vqe_T 6 PKRNLSALKRHRQSLK 21 (106)
T ss_dssp --CCCTTHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH
Confidence 555 788888887765
No 6
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=18.77 E-value=76 Score=18.23 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=5.6
Q ss_pred HHHHHHHhhcc
Q 030982 154 KREKMEKKTSR 164 (168)
Q Consensus 154 rq~K~Ekr~~k 164 (168)
++-.+|||++|
T Consensus 10 aRlrRERR~aK 20 (38)
T 3zs9_C 10 RRLLRERRQKK 20 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44445555544
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=16.04 E-value=1e+02 Score=20.45 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=23.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 030982 88 TGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPAFGAYQSFGF 133 (168)
Q Consensus 88 ~~Gl~ey~~Diiylt~~v~~~~~~s~~~W~l~LvIP~y~~Ykl~~~ 133 (168)
|..+..+..|.|. .+.-=+.+.+ +|+++|..++|-++.-
T Consensus 23 Qr~~~g~~~~~i~-----n~~RR~~~~~--l~v~pPfv~~Y~i~~W 61 (81)
T 1pp9_G 23 QRAFPHYFSKGIP-----NVLRRTRACI--LRVAPPFVAFYLVYTW 61 (81)
T ss_dssp BCSSTTHHHHHHH-----HHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred cccccchHhhhhh-----HHHHHHHhcc--eeeehhHHHHHHHHHH
Confidence 4556666666543 2332233332 3889999999988764
No 8
>2rfp_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.74A {Exiguobacterium sibiricum} PDB: 3mqu_A 3nl9_A
Probab=15.58 E-value=56 Score=24.93 Aligned_cols=20 Identities=10% Similarity=0.526 Sum_probs=16.1
Q ss_pred HHHHhh---cCcccCC-CCCcccc
Q 030982 63 QQLSAM---AKPTYTD-DGELIDG 82 (168)
Q Consensus 63 ~~l~~~---~rP~y~~-~G~Lv~~ 82 (168)
.=|++. |+|.|++ +|+++++
T Consensus 126 SNmsKl~~dGkp~~r~~dgKvlK~ 149 (171)
T 2rfp_A 126 ANMAKLGPDGQPIFRESDQKVMKP 149 (171)
T ss_dssp HHHTTCCTTSSCCBCTTTCCBCCC
T ss_pred HhhhhcCCCCCeeecCCCCceeCC
Confidence 347777 7999999 9998874
No 9
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=14.18 E-value=49 Score=16.67 Aligned_cols=11 Identities=27% Similarity=0.601 Sum_probs=8.3
Q ss_pred ccCCCCCcccc
Q 030982 72 TYTDDGELIDG 82 (168)
Q Consensus 72 ~y~~~G~Lv~~ 82 (168)
-||.+|+++..
T Consensus 9 IYD~~g~~i~~ 19 (26)
T 2v2f_A 9 IYDNKNQLIAD 19 (26)
T ss_pred EEeCCCCEeee
Confidence 47889988764
No 10
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=13.09 E-value=66 Score=32.02 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=18.4
Q ss_pred CcccCCCC---CcccccccCCCCcc
Q 030982 70 KPTYTDDG---ELIDGGFDMSTGGI 91 (168)
Q Consensus 70 rP~y~~~G---~Lv~~G~DL~~~Gl 91 (168)
.|.||..| .++|.|.|....||
T Consensus 30 ~P~ydGrgv~iai~DtGVDP~a~gl 54 (1354)
T 3lxu_X 30 YPEYDGRDVTIAIFDSGVDPRATGL 54 (1354)
T ss_dssp STTCSSTTCEEEEEESCCCTTSTTS
T ss_pred CCCCCCCccEEEEEeCCCCCCCCcc
Confidence 49999999 57899999887776
Done!