Query 030982
Match_columns 168
No_of_seqs 107 out of 226
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 11:39:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030982.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030982hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b59b1 a.139.1.1 (B:104-163) 69.4 1.3 9.5E-05 26.6 2.1 29 66-102 20-48 (60)
2 d1s6la1 a.4.5.79 (A:21-80) Alk 35.8 6.6 0.00048 23.5 1.2 25 63-87 35-59 (60)
3 d2jn0a1 b.38.1.6 (A:4-53) Hypo 21.1 8.9 0.00065 22.1 -0.1 10 67-76 14-23 (50)
4 d1pvma3 g.41.13.1 (A:143-178) 18.7 15 0.0011 19.1 0.5 10 70-79 13-22 (36)
5 d2ra2a1 b.38.1.6 (A:4-56) Unch 18.6 13 0.00092 21.7 0.2 10 67-76 15-24 (53)
6 d2rd1a1 b.38.1.6 (A:22-73) Put 18.5 11 0.0008 21.9 -0.1 9 68-76 16-24 (52)
7 d2k57a1 b.38.1.6 (A:2-53) Unch 17.0 14 0.001 21.3 0.2 8 68-75 17-24 (52)
8 d3bdua1 b.38.1.6 (A:2-54) Unch 15.9 16 0.0012 21.1 0.2 10 67-76 16-25 (53)
9 d2rb6a1 b.38.1.6 (A:25-76) Unc 15.7 14 0.001 21.3 -0.1 10 67-76 16-25 (52)
10 d1hbnb2 d.58.31.2 (B:2-188) Be 11.6 26 0.0019 25.2 0.2 15 73-87 10-24 (187)
No 1
>d2b59b1 a.139.1.1 (B:104-163) Cellulosomal scaffolding protein A {Clostridium thermocellum [TaxId: 1515]}
Probab=69.39 E-value=1.3 Score=26.59 Aligned_cols=29 Identities=14% Similarity=0.457 Sum_probs=20.4
Q ss_pred HhhcCcccCCCCCcccccccCCCCcchhHHHHHHHHH
Q 030982 66 SAMAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYIT 102 (168)
Q Consensus 66 ~~~~rP~y~~~G~Lv~~G~DL~~~Gl~ey~~Diiylt 102 (168)
.+.+.|.|. .+.|||..|.+. |+|++++.
T Consensus 20 ~~~g~~~y~-------~~lDlN~dGaIn-m~Di~Iv~ 48 (60)
T d2b59b1 20 ATKGSANYV-------EELDINRNGAIN-MQDIMIVH 48 (60)
T ss_dssp CBTTSTTCC-------GGGSTTCSSBCS-HHHHHHHH
T ss_pred cccCCcchh-------hhcccccccccc-HHHHHHHH
Confidence 445566664 489999888664 78988763
No 2
>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}
Probab=35.80 E-value=6.6 Score=23.51 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=21.4
Q ss_pred HHHHhhcCcccCCCCCcccccccCC
Q 030982 63 QQLSAMAKPTYTDDGELIDGGFDMS 87 (168)
Q Consensus 63 ~~l~~~~rP~y~~~G~Lv~~G~DL~ 87 (168)
..|+++..-.||++|++|-.|.-|.
T Consensus 35 ~aL~~~p~tEyD~~G~ivG~GLTLR 59 (60)
T d1s6la1 35 AVLEQATSTEYDKDGNIIGYGLTLR 59 (60)
T ss_dssp HHHTTCCSSCEETTTEECCCCSSSS
T ss_pred HHHHhCCCceecCCCCEEeeeeeec
Confidence 3589999999999999999997664
No 3
>d2jn0a1 b.38.1.6 (A:4-53) Hypothetical lipoprotein YgdR {Escherichia coli [TaxId: 562]}
Probab=21.07 E-value=8.9 Score=22.09 Aligned_cols=10 Identities=40% Similarity=0.584 Sum_probs=6.8
Q ss_pred hhcCcccCCC
Q 030982 67 AMAKPTYTDD 76 (168)
Q Consensus 67 ~~~rP~y~~~ 76 (168)
.-++|++|++
T Consensus 14 T~gKP~~D~d 23 (50)
T d2jn0a1 14 TDGKPEIDDD 23 (50)
T ss_dssp BCCCCEEETT
T ss_pred eCCCccccCC
Confidence 3578888763
No 4
>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=18.70 E-value=15 Score=19.13 Aligned_cols=10 Identities=40% Similarity=1.109 Sum_probs=8.2
Q ss_pred CcccCCCCCc
Q 030982 70 KPTYTDDGEL 79 (168)
Q Consensus 70 rP~y~~~G~L 79 (168)
.|.||++|++
T Consensus 13 ~pvy~~kgei 22 (36)
T d1pvma3 13 EPVYNEKGEI 22 (36)
T ss_dssp EEEECTTSCE
T ss_pred EEeecCCCcE
Confidence 5899999964
No 5
>d2ra2a1 b.38.1.6 (A:4-56) Uncharacterized protein YgdI {Salmonella typhimurium [TaxId: 90371]}
Probab=18.60 E-value=13 Score=21.65 Aligned_cols=10 Identities=30% Similarity=0.464 Sum_probs=7.0
Q ss_pred hhcCcccCCC
Q 030982 67 AMAKPTYTDD 76 (168)
Q Consensus 67 ~~~rP~y~~~ 76 (168)
.-++|++|++
T Consensus 15 T~gKP~~D~d 24 (53)
T d2ra2a1 15 TDGKPQTDND 24 (53)
T ss_dssp CSSCCEECTT
T ss_pred eCCCccccCC
Confidence 4578888863
No 6
>d2rd1a1 b.38.1.6 (A:22-73) Putative outer membrane lipoprotein STM1585 {Salmonella typhimurium [TaxId: 90371]}
Probab=18.47 E-value=11 Score=21.86 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=6.3
Q ss_pred hcCcccCCC
Q 030982 68 MAKPTYTDD 76 (168)
Q Consensus 68 ~~rP~y~~~ 76 (168)
-++|++|++
T Consensus 16 ~gKP~~D~d 24 (52)
T d2rd1a1 16 QGKPQLDKE 24 (52)
T ss_dssp ESCCEEETT
T ss_pred CCCccccCC
Confidence 478888763
No 7
>d2k57a1 b.38.1.6 (A:2-53) Uncharacterized protein PSPPH2109 {Pseudomonas syringae [TaxId: 317]}
Probab=17.01 E-value=14 Score=21.29 Aligned_cols=8 Identities=25% Similarity=0.816 Sum_probs=5.9
Q ss_pred hcCcccCC
Q 030982 68 MAKPTYTD 75 (168)
Q Consensus 68 ~~rP~y~~ 75 (168)
-++|++|+
T Consensus 17 ~gkP~~d~ 24 (52)
T d2k57a1 17 VDTPKYDE 24 (52)
T ss_dssp SSCCEECT
T ss_pred CCCccccC
Confidence 46788886
No 8
>d3bdua1 b.38.1.6 (A:2-54) Uncharacterized protein ECA1013 {Erwinia carotovora [TaxId: 554]}
Probab=15.86 E-value=16 Score=21.12 Aligned_cols=10 Identities=40% Similarity=0.604 Sum_probs=7.0
Q ss_pred hhcCcccCCC
Q 030982 67 AMAKPTYTDD 76 (168)
Q Consensus 67 ~~~rP~y~~~ 76 (168)
.-++|++|++
T Consensus 16 T~gKP~~D~d 25 (53)
T d3bdua1 16 AEGKPKVDDE 25 (53)
T ss_dssp EESCCEECTT
T ss_pred eCCCceecCC
Confidence 3578888863
No 9
>d2rb6a1 b.38.1.6 (A:25-76) Uncharacterized protein SO0963 {Shewanella oneidensis [TaxId: 70863]}
Probab=15.69 E-value=14 Score=21.32 Aligned_cols=10 Identities=20% Similarity=0.355 Sum_probs=6.9
Q ss_pred hhcCcccCCC
Q 030982 67 AMAKPTYTDD 76 (168)
Q Consensus 67 ~~~rP~y~~~ 76 (168)
.-++|++|++
T Consensus 16 T~gKP~~D~d 25 (52)
T d2rb6a1 16 SDSKPKLDKT 25 (52)
T ss_dssp ESSCCEEETT
T ss_pred eCCCccccCC
Confidence 3578888863
No 10
>d1hbnb2 d.58.31.2 (B:2-188) Beta chain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=11.62 E-value=26 Score=25.24 Aligned_cols=15 Identities=27% Similarity=0.669 Sum_probs=13.6
Q ss_pred cCCCCCcccccccCC
Q 030982 73 YTDDGELIDGGFDMS 87 (168)
Q Consensus 73 y~~~G~Lv~~G~DL~ 87 (168)
||.+|+|+.++.+|.
T Consensus 10 Ydd~Gkll~s~VpLe 24 (187)
T d1hbnb2 10 YDDRGNLVEEQVPLE 24 (187)
T ss_dssp ECTTSCEEEEEEEGG
T ss_pred ecCCCceeccCCChh
Confidence 788999999999985
Done!