BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030983
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FT52|ATP5H_ARATH ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana
GN=At3g52300 PE=1 SV=3
Length = 168
Score = 294 bits (753), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 141/168 (83%), Positives = 159/168 (94%)
Query: 1 MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60
MSGAGKKIADVAFKA RTIDW+GMAK+LV+DEAR+EF+ LRRAFDEVN+ LQTKFSQEPE
Sbjct: 1 MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60
Query: 61 PIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKE 120
PIDW+YYRKGIG+ +VD YK+AY+SIE+PKYVDKVTPEYK KFDALLVELKEAE KSLKE
Sbjct: 61 PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 120
Query: 121 SERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
SERLEKEIA+V+E+ +K+STMTA+EYFEKHPELKKKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168
>sp|O75947|ATP5H_HUMAN ATP synthase subunit d, mitochondrial OS=Homo sapiens GN=ATP5H PE=1
SV=3
Length = 161
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 27/173 (15%)
Query: 4 AGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPID 63
AG+K+A +TIDW A+++ ++ K A+ ++++E ++ + P ID
Sbjct: 2 AGRKLA------LKTIDWVAFAEIIPQNQ--KAIASSLKSWNETLTSRLAALPENPPAID 53
Query: 64 WEYYRKGIG-SRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKE-----AEGKS 117
W YY+ + + LVD +++ + +++VP DK Y ++ DA E KE AE S
Sbjct: 54 WAYYKANVAKAGLVDDFEKKFNALKVPVPEDK----YTAQVDA---EEKEDVKSCAEWVS 106
Query: 118 LKESERLEKEIAEVRELKEKIS--TMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
L ++ +E E E+ ++K I MT E+ E PE K D+ + YW +
Sbjct: 107 LSKARIVEYE-KEMEKMKNLIPFDQMTIEDLNEAFPETKL---DKKKYPYWPH 155
>sp|P31399|ATP5H_RAT ATP synthase subunit d, mitochondrial OS=Rattus norvegicus
GN=Atp5h PE=1 SV=3
Length = 161
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 4 AGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPID 63
AG+K+A +TIDW +++ ++ K ++++E T S++P ID
Sbjct: 2 AGRKLA------LKTIDWVSFVEIMPQNQ--KAIGNALKSWNETFHTRLASLSEKPPAID 53
Query: 64 WEYYRKGIGSR-LVDMYKQAYESIEVPKYVDKVT 96
W YYR + LVD +K Y ++++P DK T
Sbjct: 54 WAYYRANVDKPGLVDDFKNKYNALKIPVPEDKYT 87
>sp|Q24251|ATP5H_DROME ATP synthase subunit d, mitochondrial OS=Drosophila melanogaster
GN=ATPsyn-d PE=2 SV=2
Length = 178
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 15 AGRTIDWEGMAKMLVSDEARKEFATLRRAFD-EVNSTLQTKFSQEPEPIDWEYYRKGIG- 72
A +I+W +A+ + +++ + F + D V + L + P IDW Y+K +
Sbjct: 7 AQSSINWSALAERVPANQ-KSSFGAFKTKSDIYVRAVLAN--PECPPQIDWANYKKLVPV 63
Query: 73 SRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVR 132
+ LVD +++ YE+++VP DKV+ + ++ A E+ + S + + +KEIA ++
Sbjct: 64 AGLVDSFQKQYEALKVPYPQDKVSSQVDAEIKASQSEIDAYKKASEQRIQNYQKEIAHLK 123
Query: 133 ELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
L MT E+Y + P+ D + +W +
Sbjct: 124 SLL-PYDQMTMEDYRDAFPD--SALDPLNKPTFWPH 156
>sp|P13620|ATP5H_BOVIN ATP synthase subunit d, mitochondrial OS=Bos taurus GN=ATP5H PE=1
SV=2
Length = 161
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 4 AGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPID 63
AG+K+A +TIDW +++ ++ K A ++++E ++ ++P ID
Sbjct: 2 AGRKLA------LKTIDWVAFGEIIPRNQ--KAVANSLKSWNETLTSRLATLPEKPPAID 53
Query: 64 WEYYRKGIG-SRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKESE 122
W YY+ + + LVD +++ + +++VP DK T + ++ + E +S +
Sbjct: 54 WAYYKANVAKAGLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQ 113
Query: 123 RLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
EKE+ ++R + MT E+ E PE K D+ + YW +
Sbjct: 114 EYEKELEKMRNII-PFDQMTIEDLNEVFPETKL---DKKKYPYWPH 155
>sp|Q9DCX2|ATP5H_MOUSE ATP synthase subunit d, mitochondrial OS=Mus musculus GN=Atp5h PE=1
SV=3
Length = 161
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 29/174 (16%)
Query: 4 AGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPID 63
AG+K+A +TIDW +++ ++ K ++++E S++P ID
Sbjct: 2 AGRKLA------LKTIDWVSFVEVMPQNQ--KAIGNALKSWNETFHARLASLSEKPPAID 53
Query: 64 WEYYRKGIGSR-LVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKE-- 120
W YYR + LVD +++ Y ++++P PE K+ AL+ + ++ + KS E
Sbjct: 54 WAYYRANVAKPGLVDDFEKKYNALKIP------VPE--DKYTALVDQEEKEDVKSCAEFV 105
Query: 121 ------SERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
+ EK++ ++R + MT ++ E PE K D+ + YW +
Sbjct: 106 SGSQLRIQEYEKQLEKMRNII-PFDQMTIDDLNEIFPETKL---DKKKYPYWPH 155
>sp|Q21313|EPI1_CAEEL Laminin-like protein epi-1 OS=Caenorhabditis elegans GN=epi-1 PE=1
SV=1
Length = 3672
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 20/106 (18%)
Query: 49 STLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQA-------YESIEV-PKYV-------D 93
+TL+ F + D S L D K A YE++ P + D
Sbjct: 2462 TTLRQTFDNNKDNTDQAVEAANAFSNLTDTLKNAKAQIDNAYEALSAEPAFAESVQNARD 2521
Query: 94 KVTP-EYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKI 138
K P E K K DAL + + LKE+E+L+K++ ++ EL EK+
Sbjct: 2522 KPFPDETKEKIDAL----SKTVSQDLKETEKLKKQLEQLTELSEKL 2563
>sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus NL63 GN=1a PE=1 SV=1
Length = 4060
Score = 33.1 bits (74), Expect = 0.78, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 26/151 (17%)
Query: 28 LVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDM------YKQ 81
+V D R+E + + F+EV L K +P + +R +G R++D
Sbjct: 1013 IVDDSVREEVDIIEQPFEEVEHVLSIK-----QPFSFS-FRDELGVRVLDQSDNNCWIST 1066
Query: 82 AYESIEVPKYVDKVTPE--YK-SKFDALL---VELKEAEGKSLKESERLEKEIAEVRELK 135
+++ K +D +K K D+++ EL SL +S +L E+ LK
Sbjct: 1067 TLVQLQLTKLLDDSIEMQLFKVGKVDSIVQKCYELSHLISGSLGDSGKLLSEL-----LK 1121
Query: 136 EKISTMTAEEYFEKHPELKKKFDDEIRNDYW 166
EK T FE + KKFDD++ +W
Sbjct: 1122 EK---YTCSITFEMSCDCGKKFDDQVGCLFW 1149
>sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus NL63 GN=rep PE=3 SV=1
Length = 6729
Score = 33.1 bits (74), Expect = 0.78, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 26/151 (17%)
Query: 28 LVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDM------YKQ 81
+V D R+E + + F+EV L K +P + +R +G R++D
Sbjct: 1013 IVDDSVREEVDIIEQPFEEVEHVLSIK-----QPFSFS-FRDELGVRVLDQSDNNCWIST 1066
Query: 82 AYESIEVPKYVDKVTPE--YK-SKFDALL---VELKEAEGKSLKESERLEKEIAEVRELK 135
+++ K +D +K K D+++ EL SL +S +L E+ LK
Sbjct: 1067 TLVQLQLTKLLDDSIEMQLFKVGKVDSIVQKCYELSHLISGSLGDSGKLLSEL-----LK 1121
Query: 136 EKISTMTAEEYFEKHPELKKKFDDEIRNDYW 166
EK T FE + KKFDD++ +W
Sbjct: 1122 EK---YTCSITFEMSCDCGKKFDDQVGCLFW 1149
>sp|E9Q557|DESP_MOUSE Desmoplakin OS=Mus musculus GN=Dsp PE=3 SV=1
Length = 2883
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 14/93 (15%)
Query: 84 ESIEVPKYVDKVTPEYK---SKFDALLVELKEA------EGKSLKESERLEKEIAEVREL 134
E+ K++D+ +Y+ S+F A LV L+E +GKS K++ L+K +++EL
Sbjct: 1062 ENCNKNKFLDQNLQKYQAECSQFKAKLVSLEELKRQAELDGKSAKQN--LDKCYGQIKEL 1119
Query: 135 KEKISTMTAEEYFEK--HPELKKKFDDEIRNDY 165
EKI+ +T E EK ++ +FD + +NDY
Sbjct: 1120 NEKITRLTYEIEDEKRRRKTVEDRFDQQ-KNDY 1151
>sp|Q07DW4|CTTB2_MUNRE Cortactin-binding protein 2 OS=Muntiacus reevesi GN=CTTNBP2 PE=3
SV=1
Length = 1642
Score = 33.1 bits (74), Expect = 0.92, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 106 LLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEK 149
L+ E K+ GK L+E+++LE+ +A++ E K+K S + E EK
Sbjct: 174 LVKECKQLSGKVLEEAQKLEEVMAKLEEEKKKTSALEEELATEK 217
>sp|Q09YJ3|CTTB2_MUNMU Cortactin-binding protein 2 OS=Muntiacus muntjak GN=CTTNBP2 PE=3
SV=1
Length = 1642
Score = 33.1 bits (74), Expect = 0.92, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 106 LLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEK 149
L+ E K+ GK L+E+++LE+ +A++ E K+K S + E EK
Sbjct: 174 LVKECKQLSGKVLEEAQKLEEVMAKLEEEKKKTSALEEELATEK 217
>sp|Q09YI1|CTTB2_SHEEP Cortactin-binding protein 2 OS=Ovis aries GN=CTTNBP2 PE=3 SV=1
Length = 1641
Score = 33.1 bits (74), Expect = 0.95, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 106 LLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEK 149
L+ E K+ GK L+E+++LE+ +A++ E K+K S + E EK
Sbjct: 174 LVKECKQLSGKVLEEAQKLEEVMAKLEEEKKKTSALEEELATEK 217
>sp|Q03611|CNG_CAEEL Cyclic nucleotide-gated cation channel OS=Caenorhabditis elegans
GN=tax-4 PE=2 SV=3
Length = 733
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 87 EVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTM 141
E+ ++++ +++ L+VE EGK +K E LEK ++ + L + TM
Sbjct: 636 EIAEHLNNAVKVLQTRMARLIVEHSSTEGKLMKRIEMLEKHLSRYKALARRQKTM 690
>sp|A0M8T5|CTTB2_FELCA Cortactin-binding protein 2 OS=Felis catus GN=CTTNBP2 PE=3 SV=1
Length = 1658
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 106 LLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEK 149
L+ E K+ GK ++E+++LE+ +A++ E K K S + E EK
Sbjct: 174 LVKECKQLSGKVIEEAQKLEEVMAKLEEEKTKTSALEEELSAEK 217
>sp|P15924|DESP_HUMAN Desmoplakin OS=Homo sapiens GN=DSP PE=1 SV=3
Length = 2871
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 14/93 (15%)
Query: 84 ESIEVPKYVDKVTPEYK---SKFDALLVELKEA------EGKSLKESERLEKEIAEVREL 134
E+ K++D+ +Y+ S+F A L L+E +GKS K++ L+K +++EL
Sbjct: 1050 ENCNKNKFLDQNLQKYQAECSQFKAKLASLEELKRQAELDGKSAKQN--LDKCYGQIKEL 1107
Query: 135 KEKISTMTAEEYFEK--HPELKKKFDDEIRNDY 165
EKI+ +T E EK ++ +FD + +NDY
Sbjct: 1108 NEKITRLTYEIEDEKRRRKSVEDRFDQQ-KNDY 1139
>sp|Q58943|Y1548_METJA UPF0331 protein MJ1548 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ1548 PE=3 SV=1
Length = 122
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 20 DWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMY 79
D+ + K+L D K+ ATL + ++ + + + K+ + ++ E ++G+ R+ ++Y
Sbjct: 37 DYTNIKKLLKHDVITKDEATLLKQYNRLRNAIVHKY----DKLNLEVVKEGL-KRIDELY 91
Query: 80 KQAYESIEVPK 90
+ AYES+ V K
Sbjct: 92 EIAYESMRVMK 102
>sp|Q04ZU3|ATPA_LEPBL ATP synthase subunit alpha OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550) GN=atpA PE=3 SV=1
Length = 503
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 15/92 (16%)
Query: 72 GSRLVDMYKQAYES--------IEV----PKYVDKV-TPEYKSKFDALLVELKEAEGKSL 118
G+R+V M KQ S +E+ ++DK+ P+ + LL +KE + L
Sbjct: 414 GNRIVQMLKQPVSSPFPVEEQVVEIFAVTRGFMDKIPVPKVQQYGKFLLTRIKEQHSEVL 473
Query: 119 KESERLEKEIAEVRELKEKISTMTAEEYFEKH 150
E+ R EK+I++ +L E +S + AEE+ KH
Sbjct: 474 -EAIRKEKKISDEEKLGEVLSAI-AEEFLRKH 503
>sp|Q04S16|ATPA_LEPBJ ATP synthase subunit alpha OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197) GN=atpA PE=3 SV=1
Length = 503
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 15/92 (16%)
Query: 72 GSRLVDMYKQAYES--------IEV----PKYVDKV-TPEYKSKFDALLVELKEAEGKSL 118
G+R+V M KQ S +E+ ++DK+ P+ + LL +KE + L
Sbjct: 414 GNRIVQMLKQPVSSPFPVEEQVVEIFAVTRGFMDKIPVPKVQQYGKFLLTRIKEQHSEVL 473
Query: 119 KESERLEKEIAEVRELKEKISTMTAEEYFEKH 150
E+ R EK+I++ +L E +S + AEE+ KH
Sbjct: 474 -EAIRKEKKISDEEKLGEVLSAI-AEEFLRKH 503
>sp|P40340|TBP7_YEAST Tat-binding homolog 7 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=YTA7 PE=1 SV=2
Length = 1379
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 16/106 (15%)
Query: 47 VNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDK---VTPEYKSKF 103
+N+ S+ P+PID Y+K I + +P VDK V PE
Sbjct: 1176 INTASIVNNSEVPQPIDTNLYKKEIPA-------------AIPSAVDKEKAVIPEDSGAN 1222
Query: 104 DALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEK 149
+ EL +A S ++ E+ E +E ++ + T EE F K
Sbjct: 1223 EEYTTELIQATCTSEITTDDDERARKEPKENEDSLQTQVTEENFSK 1268
>sp|Q9USR5|THOC5_SCHPO Uncharacterized THOC5 family protein OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC577.04 PE=3 SV=1
Length = 200
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 57 QEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGK 116
Q PE I + K + R + +++YE + K +T E+KS+ D + L+ + K
Sbjct: 36 QNPEQIKRQLMSKLLILR--EANRKSYEQLVQAK---TITAEHKSELDNARIRLQALQYK 90
Query: 117 SLKESERLEKEIAEVRELKEKIST----MTAEEYFEKHPELKKKFDDEI 161
L K I + E KE I T ++ EE+ ++HPE K D ++
Sbjct: 91 KLHL-----KTIIKNYEEKEHIYTALPLVSKEEFLKEHPEFKSSNDHDL 134
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,098,856
Number of Sequences: 539616
Number of extensions: 2625925
Number of successful extensions: 15470
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 362
Number of HSP's that attempted gapping in prelim test: 14793
Number of HSP's gapped (non-prelim): 969
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)