Query 030983
Match_columns 168
No_of_seqs 115 out of 231
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:30:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3366 Mitochondrial F1F0-ATP 100.0 5.5E-50 1.2E-54 316.7 14.2 151 13-167 6-158 (172)
2 PF05873 Mt_ATP-synt_D: ATP sy 100.0 3.5E-50 7.5E-55 318.2 10.8 142 15-159 6-149 (161)
3 PRK04778 septation ring format 80.3 8.4 0.00018 36.1 7.9 122 29-158 134-259 (569)
4 PF10444 Nbl1_Borealin_N: Nbl1 79.1 13 0.00027 24.5 6.4 53 98-150 6-59 (59)
5 PF07464 ApoLp-III: Apolipopho 78.4 6.5 0.00014 31.2 5.6 81 74-158 7-91 (155)
6 PLN00204 CP12 gene family prot 78.4 6.9 0.00015 30.1 5.5 55 99-155 57-120 (126)
7 TIGR03545 conserved hypothetic 71.1 20 0.00043 33.9 7.7 116 22-149 152-270 (555)
8 PF07106 TBPIP: Tat binding pr 67.3 54 0.0012 25.5 8.5 47 107-159 81-127 (169)
9 KOG3366 Mitochondrial F1F0-ATP 58.8 97 0.0021 25.1 8.8 97 17-149 51-154 (172)
10 PF06160 EzrA: Septation ring 58.7 20 0.00043 33.7 5.2 58 29-86 54-120 (560)
11 PF09177 Syntaxin-6_N: Syntaxi 57.8 36 0.00079 24.2 5.4 68 75-148 13-81 (97)
12 PF06698 DUF1192: Protein of u 56.2 18 0.00039 24.3 3.3 22 114-135 23-44 (59)
13 COG4197 Uncharacterized protei 54.9 5.8 0.00013 29.1 0.8 47 17-72 28-74 (96)
14 PTZ00200 cysteine proteinase; 53.5 79 0.0017 29.1 8.1 112 29-152 65-187 (448)
15 PF09424 YqeY: Yqey-like prote 52.3 60 0.0013 25.1 6.2 60 88-149 39-99 (143)
16 PF06160 EzrA: Septation ring 50.4 1.4E+02 0.003 28.0 9.4 50 30-87 131-181 (560)
17 PF02413 Caudo_TAP: Caudoviral 49.8 55 0.0012 24.5 5.6 32 29-64 94-125 (130)
18 PRK11415 hypothetical protein; 49.3 25 0.00055 24.2 3.3 51 115-165 20-70 (74)
19 smart00787 Spc7 Spc7 kinetocho 48.3 1.6E+02 0.0034 25.8 8.8 82 63-154 133-214 (312)
20 COG5509 Uncharacterized small 47.3 30 0.00065 23.5 3.3 23 113-135 26-48 (65)
21 PF05010 TACC: Transforming ac 47.3 1.5E+02 0.0031 24.6 8.0 60 103-163 145-204 (207)
22 PF08984 DUF1858: Domain of un 47.0 17 0.00036 23.6 2.0 20 140-159 4-23 (59)
23 PRK10947 global DNA-binding tr 45.1 91 0.002 24.1 6.2 42 106-148 36-77 (135)
24 PF04799 Fzo_mitofusin: fzo-li 44.1 69 0.0015 25.9 5.5 39 97-135 105-143 (171)
25 PF08317 Spc7: Spc7 kinetochor 43.7 1.6E+02 0.0036 25.5 8.3 50 105-154 170-219 (325)
26 PF08946 Osmo_CC: Osmosensory 42.8 73 0.0016 20.4 4.3 26 108-133 15-40 (46)
27 PRK04778 septation ring format 41.6 78 0.0017 29.7 6.3 114 27-143 55-189 (569)
28 PF05873 Mt_ATP-synt_D: ATP sy 41.1 1.3E+02 0.0029 23.7 6.7 27 60-86 8-37 (161)
29 PRK13454 F0F1 ATP synthase sub 40.8 91 0.002 24.8 5.8 14 56-69 19-32 (181)
30 PF07352 Phage_Mu_Gam: Bacteri 40.5 72 0.0016 24.5 5.0 47 99-145 19-65 (149)
31 cd08539 SAM_PNT-ESE-3-like Ste 40.0 29 0.00062 24.3 2.4 30 139-168 44-74 (74)
32 COG2841 Uncharacterized protei 38.5 27 0.00059 24.4 2.1 45 120-164 25-69 (72)
33 PHA01632 hypothetical protein 38.2 21 0.00045 24.0 1.4 24 142-165 29-52 (64)
34 PF01074 Glyco_hydro_38: Glyco 37.9 22 0.00047 29.6 1.8 24 143-166 52-75 (275)
35 PF02672 CP12: CP12 domain; I 35.9 24 0.00053 24.3 1.5 34 119-154 31-64 (71)
36 PRK09819 alpha-mannosidase; Pr 35.5 25 0.00054 34.7 2.1 43 124-166 33-81 (875)
37 PRK09174 F0F1 ATP synthase sub 35.0 91 0.002 25.5 5.0 74 59-133 44-119 (204)
38 cd08538 SAM_PNT-ESE-2-like Ste 33.5 36 0.00078 24.0 2.1 30 139-168 46-76 (78)
39 PF14698 ASL_C2: Argininosucci 32.9 25 0.00053 23.9 1.2 29 131-160 33-61 (70)
40 PF06518 DUF1104: Protein of u 32.0 58 0.0013 23.7 3.1 29 136-164 55-83 (93)
41 PF09403 FadA: Adhesion protei 31.7 2.4E+02 0.0051 21.6 8.4 36 100-135 88-123 (126)
42 PRK10328 DNA binding protein, 31.2 2E+02 0.0044 22.1 6.1 34 114-148 44-77 (134)
43 COG4477 EzrA Negative regulato 31.2 1.4E+02 0.003 28.4 6.1 27 26-52 53-80 (570)
44 PF05852 DUF848: Gammaherpesvi 30.0 1.5E+02 0.0033 23.3 5.3 58 105-163 54-111 (146)
45 PF09748 Med10: Transcription 29.8 72 0.0016 24.2 3.4 30 129-159 98-127 (128)
46 PF03310 Cauli_DNA-bind: Cauli 29.8 2E+02 0.0044 22.0 5.8 34 106-140 4-37 (121)
47 PF07889 DUF1664: Protein of u 29.4 2.1E+02 0.0046 21.9 5.9 54 97-154 46-99 (126)
48 COG1660 Predicted P-loop-conta 28.8 27 0.00058 30.4 0.9 36 1-41 9-44 (286)
49 COG0216 PrfA Protein chain rel 28.6 2.2E+02 0.0047 25.7 6.6 92 34-131 6-102 (363)
50 cd00179 SynN Syntaxin N-termin 28.2 2.5E+02 0.0054 20.8 7.8 19 148-166 125-144 (151)
51 PF10743 Phage_Cox: Regulatory 28.2 63 0.0014 23.4 2.6 29 137-165 9-37 (87)
52 PF09602 PhaP_Bmeg: Polyhydrox 28.1 3E+02 0.0064 22.2 6.7 52 75-135 49-101 (165)
53 PHA03161 hypothetical protein; 28.0 1.5E+02 0.0032 23.5 4.9 60 102-162 51-110 (150)
54 KOG2991 Splicing regulator [RN 27.7 2.6E+02 0.0055 24.5 6.6 46 114-160 231-276 (330)
55 PF13764 E3_UbLigase_R4: E3 ub 27.5 2.9E+02 0.0063 27.5 7.8 78 57-148 720-799 (802)
56 KOG3951 Uncharacterized conser 27.5 77 0.0017 27.6 3.5 62 16-77 103-168 (321)
57 cd05535 POLBc_epsilon DNA poly 27.2 23 0.0005 34.0 0.3 12 61-72 595-606 (621)
58 PF11831 Myb_Cef: pre-mRNA spl 27.0 3.3E+02 0.0071 22.6 7.2 99 32-148 115-230 (231)
59 PF06148 COG2: COG (conserved 26.9 83 0.0018 23.5 3.3 73 63-135 34-110 (133)
60 PLN02372 violaxanthin de-epoxi 26.8 2E+02 0.0044 26.6 6.2 12 73-84 360-371 (455)
61 COG3352 FlaC Putative archaeal 26.8 3.3E+02 0.0072 21.7 7.8 64 74-148 51-115 (157)
62 PF05508 Ran-binding: RanGTP-b 26.6 4.5E+02 0.0097 23.2 9.4 106 22-143 33-145 (302)
63 COG5293 Predicted ATPase [Gene 25.1 1.6E+02 0.0035 27.8 5.3 53 63-115 284-341 (591)
64 COG2306 Predicted RNA-binding 25.0 78 0.0017 25.8 2.9 35 131-167 128-162 (183)
65 PF12001 DUF3496: Domain of un 24.8 66 0.0014 24.2 2.3 35 116-150 4-38 (111)
66 PF13166 AAA_13: AAA domain 24.8 3.7E+02 0.008 25.4 7.9 52 34-85 328-381 (712)
67 PF13094 CENP-Q: CENP-Q, a CEN 24.6 2.7E+02 0.0058 21.4 5.9 10 81-90 4-13 (160)
68 PF05377 FlaC_arch: Flagella a 24.6 1.5E+02 0.0032 19.7 3.7 18 115-132 17-34 (55)
69 PF05478 Prominin: Prominin; 24.6 6.8E+02 0.015 24.6 10.2 46 29-88 587-640 (806)
70 PF02185 HR1: Hr1 repeat; Int 24.5 1.3E+02 0.0028 20.0 3.5 30 106-135 34-63 (70)
71 PF13234 rRNA_proc-arch: rRNA- 24.3 3.2E+02 0.007 22.7 6.7 67 54-129 195-266 (268)
72 KOG2620 Prohibitins and stomat 24.1 35 0.00075 29.8 0.8 35 134-168 107-143 (301)
73 COG2916 Hns DNA-binding protei 24.0 3.3E+02 0.0071 21.0 6.1 42 105-147 29-70 (128)
74 TIGR01764 excise DNA binding d 24.0 92 0.002 18.1 2.5 25 141-165 2-26 (49)
75 COG2442 Uncharacterized conser 23.5 55 0.0012 23.0 1.6 23 139-161 42-65 (79)
76 PF04977 DivIC: Septum formati 23.4 1.1E+02 0.0023 20.2 3.0 39 108-146 27-65 (80)
77 PRK10884 SH3 domain-containing 23.4 2.5E+02 0.0055 23.0 5.7 54 75-134 94-147 (206)
78 PF00804 Syntaxin: Syntaxin; 22.9 2.5E+02 0.0054 18.9 5.9 53 73-128 20-72 (103)
79 PF11043 DUF2856: Protein of u 22.8 2.1E+02 0.0046 20.6 4.5 64 73-157 20-84 (97)
80 COG4594 FecB ABC-type Fe3+-cit 22.7 2.6E+02 0.0057 24.5 5.8 57 93-152 143-205 (310)
81 KOG4603 TBP-1 interacting prot 22.2 4.2E+02 0.0092 21.8 6.6 19 134-152 142-160 (201)
82 PF12999 PRKCSH-like: Glucosid 22.1 1.9E+02 0.0042 23.4 4.7 28 105-132 146-173 (176)
83 PF05400 FliT: Flagellar prote 22.0 2.4E+02 0.0052 18.4 5.9 68 63-135 9-78 (84)
84 PF04255 DUF433: Protein of un 21.8 61 0.0013 20.8 1.5 21 139-159 30-51 (56)
85 PRK13729 conjugal transfer pil 21.6 2E+02 0.0043 26.9 5.2 23 112-134 97-119 (475)
86 KOG1319 bHLHZip transcription 20.9 3.7E+02 0.0079 22.5 6.1 57 76-132 74-132 (229)
87 PRK06771 hypothetical protein; 20.8 3.4E+02 0.0075 19.8 6.5 47 110-165 21-67 (93)
88 PF01267 F-actin_cap_A: F-acti 20.6 1.3E+02 0.0027 25.8 3.5 35 32-66 228-262 (271)
89 PRK09737 EcoKI restriction-mod 20.6 2.6E+02 0.0057 24.4 5.7 25 82-106 361-385 (461)
90 PF08657 DASH_Spc34: DASH comp 20.4 4.9E+02 0.011 22.2 7.1 82 31-131 176-258 (259)
91 PF06696 Strep_SA_rep: Strepto 20.4 1.7E+02 0.0036 16.3 2.8 17 118-134 4-20 (25)
92 PF14257 DUF4349: Domain of un 20.4 2.1E+02 0.0046 23.6 4.9 53 108-163 128-180 (262)
93 KOG3046 Transcription factor, 20.3 4.4E+02 0.0096 20.8 9.6 102 46-163 30-139 (147)
94 smart00595 MADF subfamily of S 20.1 2.9E+02 0.0062 18.6 4.9 49 20-69 29-80 (89)
No 1
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=100.00 E-value=5.5e-50 Score=316.69 Aligned_cols=151 Identities=36% Similarity=0.585 Sum_probs=146.5
Q ss_pred HhhhhhccHHHHHhhcCCHHHHHHHHHHHhhHHHHHHHHhhhcCCCCCcCCHHHHhcccC-hHHHHHHHHHhhccc-ccc
Q 030983 13 FKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIG-SRLVDMYKQAYESIE-VPK 90 (168)
Q Consensus 13 ~~a~~~idWa~~~~~lvp~~~~~~l~afK~r~~~~~~~l~~~~pe~pp~IDwa~Yk~~l~-~~lVD~feK~y~s~k-vp~ 90 (168)
+.|.++|||++++++ ||++|+++|.+||++|+++.++|+. ||++||+|||+|||++|+ .|+||.||++|++|+ +|+
T Consensus 6 ~aa~~~IdWa~lae~-v~~~~~~~~s~fk~~~~~~~~~l~~-lpe~~p~IDwa~Yrk~va~a~~VD~~ek~y~slk~v~~ 83 (172)
T KOG3366|consen 6 SAASSSIDWAKLAER-VPPNQAAEFSSFKSRNDEAVSRLLT-LPEQPPTIDWAYYRKVVANAGLVDKYEKKYDSLKPVPV 83 (172)
T ss_pred HHHhccccHHHHHHH-cCHHHHHHHHHHHHhhHHHHHHHHh-cccCCCccCHHHHHHHhhhhHHHHHHHHHHHhccccCC
Confidence 334667999999999 9999999999999999999999998 699999999999999999 999999999999999 999
Q ss_pred ccCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcchHHHHHHhhhCCCC
Q 030983 91 YVDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWG 167 (168)
Q Consensus 91 ~~d~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~~I~~g~Wg 167 (168)
|.|+|+++|+++++.+++.|+++++.|.+||++|+++|++|+++| ||+|||||||+++|| |...|++|+++|.|+
T Consensus 84 ~~~ky~~~vda~~k~~~~~~ke~~~~s~~~iq~l~k~le~v~~~~-P~demT~ed~~ea~P-~~~k~d~~~k~g~W~ 158 (172)
T KOG3366|consen 84 DEDKYLKEVDAEEKAAVKEIKEYESLSKKRIQELEKELEKVKSAR-PFDEMTMEDLNEAFP-IEKKVDDMVKPGKWP 158 (172)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccccHHHHHHhCc-hhhcccccccCCCCC
Confidence 999999999999999999999999999999999999999999999 999999999999999 999999999999993
No 2
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=100.00 E-value=3.5e-50 Score=318.24 Aligned_cols=142 Identities=30% Similarity=0.540 Sum_probs=93.1
Q ss_pred hhhhccHHHHHhhcCCHHHHHHHHHHHhhHHHHHHHHhhhcCCCCCcCCHHHHhcccC--hHHHHHHHHHhhcccccccc
Q 030983 15 AGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIG--SRLVDMYKQAYESIEVPKYV 92 (168)
Q Consensus 15 a~~~idWa~~~~~lvp~~~~~~l~afK~r~~~~~~~l~~~~pe~pp~IDwa~Yk~~l~--~~lVD~feK~y~s~kvp~~~ 92 (168)
|+++|||++|+++ ||++|+++|++||+|||+++++|.. ||++||+|||+|||++|+ ++|||+|||+|++|+||||+
T Consensus 6 a~~aidWa~l~~~-vp~~~~~~~~afk~r~d~~~~~v~~-~pe~pp~IDwa~Yk~~l~~~~~lVD~feK~y~s~kip~p~ 83 (161)
T PF05873_consen 6 AASAIDWAKLAER-VPPEQKAQFQAFKKRSDEYKRRVSK-LPEQPPKIDWAHYKSVLKENPGLVDEFEKQYESFKIPYPV 83 (161)
T ss_dssp ------HHHHHTT-S-GGGHHHHHHHHHHHHHHHHHHHH-S-SS-----HHHHHHC-S-STTHHHHHHHHHCC-------
T ss_pred HHHHccHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHh-CcCCCCCCCHHHHHHHhhhhHHHHHHHHHHHhccCCCCCh
Confidence 3789999999999 8999999999999999999999997 799999999999999999 99999999999999999999
Q ss_pred CccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcchHHHHH
Q 030983 93 DKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDD 159 (168)
Q Consensus 93 d~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~ 159 (168)
|++++.|+++++++++++++++++|+.||++|+++|++|++++ ||+|||||||+++||+++.+++.
T Consensus 84 d~~~~~i~~~e~~~~~~~~~~~~~s~~~i~~l~keL~~i~~~~-P~e~mT~dd~~~a~Pe~~~d~~k 149 (161)
T PF05873_consen 84 DKQTKEIDAQEKEAIKEAKEFEAESKKRIAELEKELANIESAR-PFEQMTVDDYAAAFPEIALDINK 149 (161)
T ss_dssp -TTTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHhCCHHHHHHhCcccccccCC
Confidence 9999999999999999999999999999999999999999999 99999999999999999998653
No 3
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=80.32 E-value=8.4 Score=36.07 Aligned_cols=122 Identities=14% Similarity=0.249 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHHhhhcCCCCCcCCHHHHhcccC-hHHHHHHHHHhhccccccccCccch--hhhhHHHH
Q 030983 29 VSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIG-SRLVDMYKQAYESIEVPKYVDKVTP--EYKSKFDA 105 (168)
Q Consensus 29 vp~~~~~~l~afK~r~~~~~~~l~~~~pe~pp~IDwa~Yk~~l~-~~lVD~feK~y~s~kvp~~~d~~~~--~i~a~e~~ 105 (168)
.-..++..+..+|.+|.+++..++.. .|.|--+.=. ..-.+.+|..|..|.---..+.+.. .+-..-.+
T Consensus 134 ~e~~nr~~v~~l~~~y~~~rk~ll~~--------~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~ 205 (569)
T PRK04778 134 SEEKNREEVEQLKDLYRELRKSLLAN--------RFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEE 205 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--------CccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 34678899999999999999999876 3433333333 5667777777777763333333322 12222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccccccCCHHHhHHhCCcchHHHH
Q 030983 106 LLVELKEAEGKSLKESERLEKEI-AEVRELKEKISTMTAEEYFEKHPELKKKFD 158 (168)
Q Consensus 106 ~~~~a~~~~~~s~~rI~~l~~eL-~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~ 158 (168)
...........+=.-+.+++.++ ..|..+..-+.+|+.+.|.-.+=++..+|.
T Consensus 206 ~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~ 259 (569)
T PRK04778 206 ELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQ 259 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHH
Confidence 33444444444445556666666 666666666777776666433333444433
No 4
>PF10444 Nbl1_Borealin_N: Nbl1 / Borealin N terminal; InterPro: IPR018851 This entry represents the N-terminal domain of borealin, and is also found in the N-terminal-Borealin-like (NBL; YHR199C-A) protein from Saccharomyces cerevisiae (Baker's yeast). NBL is a subunit of the conserved chromosomal passenger complex (CPC; Ipl1p-Sli15p-Bir1p-Nbl1p), which regulates mitotic chromosome segregation. It is not required for the kinase activity of the complex and it mediates the interaction of Sli15p and Bir1p [].; PDB: 2RAW_B 2RAX_Y 2QFA_B.
Probab=79.12 E-value=13 Score=24.50 Aligned_cols=53 Identities=9% Similarity=0.111 Sum_probs=36.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccccccCCHHHhHHhC
Q 030983 98 EYKSKFDALLVELKEAEGKSLKESERLEKEIAE-VRELKEKISTMTAEEYFEKH 150 (168)
Q Consensus 98 ~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~-i~~~~~P~e~mT~dd~~~a~ 150 (168)
.|+.+..++...++...+..+.-+..+...++- |-.+|.....||+-||++.|
T Consensus 6 ~l~~fd~Ev~~r~~~lr~~~~~~~~~~~~~~~~~l~riP~~vR~m~~~d~~~~y 59 (59)
T PF10444_consen 6 FLQNFDLEVEERIRRLRAQYENLLQSLRNRLEMELLRIPKAVRKMTMRDFLEKY 59 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHTSBHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhCCHHHHhhcC
Confidence 466677777788888888888888887777664 33344345599999998754
No 5
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=78.45 E-value=6.5 Score=31.16 Aligned_cols=81 Identities=15% Similarity=0.243 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhccccccccCccchhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhccccccCCHHHhHHh
Q 030983 74 RLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKESER----LEKEIAEVRELKEKISTMTAEEYFEK 149 (168)
Q Consensus 74 ~lVD~feK~y~s~kvp~~~d~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~----l~~eL~~i~~~~~P~e~mT~dd~~~a 149 (168)
+.-..|.+++.++.---..+.....|...-..+..++..+...++.+|.. ++.-|..++.-. ++ |++++...
T Consensus 7 e~~~~~~~~~~~~~~~~~~~Ev~~aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl---~e-t~~~L~k~ 82 (155)
T PF07464_consen 7 EFQKEFQEQVNKLLGSQNQQEVVKAIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKL---EE-TAEKLRKA 82 (155)
T ss_dssp HHHHHHHHHHHHHTSS--SS-SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHH---HH-HHHGGGG-
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHH---HH-HHHHHHhc
Confidence 34456666666665323456778899999999999999999999999876 555555555544 55 89999999
Q ss_pred CCcchHHHH
Q 030983 150 HPELKKKFD 158 (168)
Q Consensus 150 ~Pe~~~~v~ 158 (168)
+||+.+.+.
T Consensus 83 ~Pev~~qa~ 91 (155)
T PF07464_consen 83 NPEVEKQAN 91 (155)
T ss_dssp SHHHHHT-S
T ss_pred ChHHHHHHH
Confidence 999887654
No 6
>PLN00204 CP12 gene family protein; Provisional
Probab=78.40 E-value=6.9 Score=30.11 Aligned_cols=55 Identities=25% Similarity=0.367 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcchH
Q 030983 99 YKSKFDALLVELKEAEGK---------SLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKK 155 (168)
Q Consensus 99 i~a~e~~~~~~a~~~~~~---------s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~~ 155 (168)
|+.+-.+.+++|.+..+. .=.++++|+++..+-+.-. | +...+|.||+.+||..+
T Consensus 57 L~e~Ie~aI~eArevCa~g~~S~eCaaAWDeVEELqAeasHqr~~~-~-~kt~lE~YCdeNPeA~E 120 (126)
T PLN00204 57 ISEKVEKSIKEAEETCADDPASGECVAAWDEVEELSAAASHARDKK-K-GSDPLEEYCKDNPETDE 120 (126)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHccccC-C-CCChHHHHHHHCCCchh
Confidence 444455556666665552 2346889999999998877 6 77799999999999754
No 7
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=71.11 E-value=20 Score=33.91 Aligned_cols=116 Identities=15% Similarity=0.203 Sum_probs=73.2
Q ss_pred HHHHhhcCCHHHHHHHHHHHhhHHHHHHHHhhhcCCCCCcCCHHHHhcccChHHHHHHHHHhhcccccccc---Cccchh
Q 030983 22 EGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYV---DKVTPE 98 (168)
Q Consensus 22 a~~~~~lvp~~~~~~l~afK~r~~~~~~~l~~~~pe~pp~IDwa~Yk~~l~~~lVD~feK~y~s~kvp~~~---d~~~~~ 98 (168)
.++..+ .+=.|......+++...+...+...++.+-|-.=+.+.|++.|. .+++ ..++-|-+- -..+..
T Consensus 152 ~eil~~-~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~-----~i~~--~~ik~p~~i~~~~~e~d~ 223 (555)
T TIGR03545 152 RALLKG-EDLKTVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLE-----AIKK--KDIKNPLELQKIKEEFDK 223 (555)
T ss_pred HHHhcc-CCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH-----HHHh--ccCCCHHHHHHHHHHHHH
Confidence 444555 44567788888888777777777665333334556777766543 2222 123323211 123455
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHh
Q 030983 99 YKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEK 149 (168)
Q Consensus 99 i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a 149 (168)
+..+.+.+...++.+..+.+.....++..++.+++++ +..++-+...
T Consensus 224 lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap----~~D~~~L~~~ 270 (555)
T TIGR03545 224 LKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAP----QNDLKRLENK 270 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc----HhHHHHHHHH
Confidence 5666677777888888899999999999999999988 4444444433
No 8
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=67.28 E-value=54 Score=25.50 Aligned_cols=47 Identities=32% Similarity=0.406 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcchHHHHH
Q 030983 107 LVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDD 159 (168)
Q Consensus 107 ~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~ 159 (168)
+....+-....+..+..|+.+|..+.+.+ |.+|+...-=++..++..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~------t~~el~~~i~~l~~e~~~ 127 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEP------TNEELREEIEELEEEIEE 127 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHHH
Confidence 44555566667777888888888888888 555555544444444443
No 9
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=58.80 E-value=97 Score=25.12 Aligned_cols=97 Identities=24% Similarity=0.323 Sum_probs=51.8
Q ss_pred hhccHHHHHhhcCCHHHHHHHHHHHhhHHHHHHHHhhhcCCCCCcCCHHHHhcccChHHHHHHHHHhhccccccccCccc
Q 030983 17 RTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVT 96 (168)
Q Consensus 17 ~~idWa~~~~~lvp~~~~~~l~afK~r~~~~~~~l~~~~pe~pp~IDwa~Yk~~l~~~lVD~feK~y~s~kvp~~~d~~~ 96 (168)
..|||+..-+. | ....-+..|.+.++.+ .|-+||=+-|= ..||.+++.- +
T Consensus 51 p~IDwa~Yrk~-v--a~a~~VD~~ek~y~sl----------k~v~~~~~ky~-----~~vda~~k~~------------~ 100 (172)
T KOG3366|consen 51 PTIDWAYYRKV-V--ANAGLVDKYEKKYDSL----------KPVPVDEDKYL-----KEVDAEEKAA------------V 100 (172)
T ss_pred CccCHHHHHHH-h--hhhHHHHHHHHHHHhc----------cccCCCHHHHH-----HHhhHHHHHH------------H
Confidence 46899988766 4 3444444444333222 12556655553 4677777652 2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhccccccCCHHHhHHh
Q 030983 97 PEYKSKFDALLVELKEAEGKSLKESERL-------EKEIAEVRELKEKISTMTAEEYFEK 149 (168)
Q Consensus 97 ~~i~a~e~~~~~~a~~~~~~s~~rI~~l-------~~eL~~i~~~~~P~e~mT~dd~~~a 149 (168)
..|. +.....++=+++.+++|+.+ +-|.+.+.... |++. -+|+.+..
T Consensus 101 ~~~k----e~~~~s~~~iq~l~k~le~v~~~~P~demT~ed~~ea~-P~~~-k~d~~~k~ 154 (172)
T KOG3366|consen 101 KEIK----EYESLSKKRIQELEKELEKVKSARPFDEMTMEDLNEAF-PIEK-KVDDMVKP 154 (172)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHhC-chhh-cccccccC
Confidence 2222 22333333333344444443 45888999999 9443 66666554
No 10
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=58.69 E-value=20 Score=33.66 Aligned_cols=58 Identities=14% Similarity=0.306 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHhhHHHHHHH-Hhhh------cCCCCCcCCHHHHhcccC--hHHHHHHHHHhhcc
Q 030983 29 VSDEARKEFATLRRAFDEVNST-LQTK------FSQEPEPIDWEYYRKGIG--SRLVDMYKQAYESI 86 (168)
Q Consensus 29 vp~~~~~~l~afK~r~~~~~~~-l~~~------~pe~pp~IDwa~Yk~~l~--~~lVD~feK~y~s~ 86 (168)
+.|++...|...++.++++... +... .-+......|-.-++.+. ...++.++....++
T Consensus 54 l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i 120 (560)
T PF06160_consen 54 LTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEI 120 (560)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999888843 2211 012223334444444444 45555555554443
No 11
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=57.82 E-value=36 Score=24.20 Aligned_cols=68 Identities=19% Similarity=0.183 Sum_probs=42.7
Q ss_pred HHHHHHHHhhccc-cccccCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHH
Q 030983 75 LVDMYKQAYESIE-VPKYVDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFE 148 (168)
Q Consensus 75 lVD~feK~y~s~k-vp~~~d~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~ 148 (168)
-++.++..|.... .+.+.+ -......+..+....+..+...|.+|+..+.-++..++-| .+|-+|+..
T Consensus 13 sl~~l~~~~~~~~~~~~~~~-----~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF-~l~~~Ei~~ 81 (97)
T PF09177_consen 13 SLDRLESLYRRWQRLRSDTS-----SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKF-NLSEEEISR 81 (97)
T ss_dssp HHHHHHHHHHHHHHHTTHCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-T-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCC-----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-CCCHHHHHH
Confidence 3455566665554 333333 2334445556667777777778888888888888887777 777777643
No 12
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=56.21 E-value=18 Score=24.27 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 030983 114 EGKSLKESERLEKEIAEVRELK 135 (168)
Q Consensus 114 ~~~s~~rI~~l~~eL~~i~~~~ 135 (168)
+.+.+.||+.|+.|++.++..+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAI 44 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777665
No 13
>COG4197 Uncharacterized protein conserved in bacteria, prophage-related [Function unknown]
Probab=54.92 E-value=5.8 Score=29.13 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=26.6
Q ss_pred hhccHHHHHhhcCCHHHHHHHHHHHhhHHHHHHHHhhhcCCCCCcCCHHHHhcccC
Q 030983 17 RTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIG 72 (168)
Q Consensus 17 ~~idWa~~~~~lvp~~~~~~l~afK~r~~~~~~~l~~~~pe~pp~IDwa~Yk~~l~ 72 (168)
..=.|.....+ +|+.....+..-- ...+.. -+--|.|||.||++.+.
T Consensus 28 ~vnQw~~g~r~-~~a~r~~aIerAt------~g~Vs~--~elrp~i~w~~~~~~~~ 74 (96)
T COG4197 28 SVNQWIKGRRQ-VAAERALAIERAT------SGQVSR--EELRPDIDWEYLRRSEC 74 (96)
T ss_pred HHHHHhhheee-cCcccchHHHHHh------cCCccH--HHHcccCCHHHHHHHHh
Confidence 34456666666 6666555543221 111221 23345999999998876
No 14
>PTZ00200 cysteine proteinase; Provisional
Probab=53.54 E-value=79 Score=29.08 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHHhhhcCCCCCcCCHHHHhcccChHHHHHHHHHhhccccccccCccchhhhhHHHHHHH
Q 030983 29 VSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLV 108 (168)
Q Consensus 29 vp~~~~~~l~afK~r~~~~~~~l~~~~pe~pp~IDwa~Yk~~l~~~lVD~feK~y~s~kvp~~~d~~~~~i~a~e~~~~~ 108 (168)
++=.-...+.+|| .++-+-+ ++ .-|.+| ...+...||++=..|+.=-|+.+.......+..|+.=..+
T Consensus 65 ~~~~~~~~~~~f~---~~~~~~~-~~---~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~e~e~~~~F~~f~~k 132 (448)
T PTZ00200 65 VLVSKSKMVKSFK---SDLEEHI-DK---DFPRLD-----KSKRDSYVDELTRLFKDGYISDDPKLEFEVYLEFEEFNKK 132 (448)
T ss_pred EEEEehHhHHhHH---HHHHHHH-hc---cCCCcC-----hhHHHHHHHHHHHHhhCCCcCCCccchHHHHHHHHHHHHH
Confidence 3444567788888 2333333 33 333444 4444788888888887777777776665555554444333
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHhc---------cccccCCHHHhHHhCCc
Q 030983 109 ELKEA--EGKSLKESERLEKEIAEVRELK---------EKISTMTAEEYFEKHPE 152 (168)
Q Consensus 109 ~a~~~--~~~s~~rI~~l~~eL~~i~~~~---------~P~e~mT~dd~~~a~Pe 152 (168)
--+.+ ..+-..|..-....+..|+..- -.|.+||-|||...++.
T Consensus 133 y~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~~~y~lgiN~FsDlT~eEF~~~~~~ 187 (448)
T PTZ00200 133 YNRKHATHAERLNRFLTFRNNYLEVKSHKGDEPYSKEINKFSDLTEEEFRKLFPV 187 (448)
T ss_pred hCCcCCCHHHHHHHHHHHHHHHHHHHHhcCcCCeEEeccccccCCHHHHHHHhcc
Confidence 33333 2233445556666666666432 28999999999877653
No 15
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=52.28 E-value=60 Score=25.12 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=40.0
Q ss_pred cccccCccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccCCHHHhHHh
Q 030983 88 VPKYVDKVTPEYKSKFDALLVELKEAEGKSLKES-ERLEKEIAEVRELKEKISTMTAEEYFEK 149 (168)
Q Consensus 88 vp~~~d~~~~~i~a~e~~~~~~a~~~~~~s~~rI-~~l~~eL~~i~~~~~P~e~mT~dd~~~a 149 (168)
.+.+.+..+..|..+-++....++.|.......+ +..+.|++-|++.. | .+||-||+...
T Consensus 39 ~~l~d~~v~~vi~k~iKqr~ea~e~y~~agR~dlae~e~~Ei~iL~~yL-P-~~lseeEi~~~ 99 (143)
T PF09424_consen 39 RELTDEEVIAVIRKEIKQRKEAAEQYEKAGRPDLAEKEQAEIEILEEYL-P-KQLSEEEIEAI 99 (143)
T ss_dssp S---HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHGGGS-------HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-c-CCCCHHHHHHH
Confidence 3555556677888888888888888887766554 56788999999999 9 69999887553
No 16
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=50.36 E-value=1.4e+02 Score=28.03 Aligned_cols=50 Identities=14% Similarity=0.333 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHhhhcCCCCCcCCHHHHhcccC-hHHHHHHHHHhhccc
Q 030983 30 SDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIG-SRLVDMYKQAYESIE 87 (168)
Q Consensus 30 p~~~~~~l~afK~r~~~~~~~l~~~~pe~pp~IDwa~Yk~~l~-~~lVD~feK~y~s~k 87 (168)
-..++..+..++.++.+++..+... .+.|-.+.=. ..-.+.++..|..|.
T Consensus 131 e~~nr~~i~~l~~~y~~lrk~ll~~--------~~~~G~a~~~Le~~L~~ie~~F~~f~ 181 (560)
T PF06160_consen 131 EEKNREEIEELKEKYRELRKELLAH--------SFSYGPAIEELEKQLENIEEEFSEFE 181 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--------hhhhchhHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888888865 3333322222 445556666665554
No 17
>PF02413 Caudo_TAP: Caudovirales tail fibre assembly protein; InterPro: IPR003458 This family contains Bacteriophage T4 gp38 and related bacterial prophage and phage proteins. Gene 38 of phage T4 codes for a protein containing 183 amino acid residues with molecular weight of 22.3 kDa. Together with genes 36 and 37, whose products are structural proteins of the fibre distal part, gene 38 forms one transcription unit. Gp38, is a chaperone, which is required for assembly of the distal part of the long fibres and which is absent from the mature phage particle. In the absence of gp38 gp37, which is a component of the distal part of the long tail fibre, fails to oligomerise. The carboxy-terminal region of gp37 forms the tip of the distal fibre that interacts with the cell receptors. Functionally the role of gp38 can be replaced by pTfa of Bacteriophage lambda [, , ]. The function of many of the other members of this family remain to be elucidated.
Probab=49.79 E-value=55 Score=24.54 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHHhhhcCCCCCcCCH
Q 030983 29 VSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDW 64 (168)
Q Consensus 29 vp~~~~~~l~afK~r~~~~~~~l~~~~pe~pp~IDw 64 (168)
.+++.++.|.+.| .++..|.+.=....|.|+|
T Consensus 94 atd~e~~~L~~Wk----~Yrv~L~rvD~s~apdI~W 125 (130)
T PF02413_consen 94 ATDEEKARLKAWK----KYRVALNRVDTSTAPDIDW 125 (130)
T ss_pred CChHHHHHHHHHH----HHHHHHhccCCCCCCCCCC
Confidence 7899999999999 8888888754455677998
No 18
>PRK11415 hypothetical protein; Provisional
Probab=49.25 E-value=25 Score=24.24 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcchHHHHHHhhhCC
Q 030983 115 GKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDY 165 (168)
Q Consensus 115 ~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~~I~~g~ 165 (168)
+....+-.+|+.++..++..++|.++..+..+-.-.=.++.++..++++++
T Consensus 20 ~~L~~~h~~Ld~~I~~lE~~~~~~~d~~i~~LKk~KL~LKDeI~~~L~~~~ 70 (74)
T PRK11415 20 MSLFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKDEMLKILQQES 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 344556678999999999988788888999999888888999988887653
No 19
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=48.34 E-value=1.6e+02 Score=25.82 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=53.1
Q ss_pred CHHHHhcccChHHHHHHHHHhhccccccccCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Q 030983 63 DWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMT 142 (168)
Q Consensus 63 Dwa~Yk~~l~~~lVD~feK~y~s~kvp~~~d~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT 142 (168)
+|=-+|..+-.||.+.++..++.++--+ ..-.+....+...+-.+..+...|+.++.++++..+++++-.
T Consensus 133 ~WYeWR~kllegLk~~L~~~~~~l~~D~----------~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d 202 (312)
T smart00787 133 MWYEWRMKLLEGLKEGLDENLEGLKEDY----------KLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD 202 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 5555555555555555555554443111 111233344566777788888999999999999998888888
Q ss_pred HHHhHHhCCcch
Q 030983 143 AEEYFEKHPELK 154 (168)
Q Consensus 143 ~dd~~~a~Pe~~ 154 (168)
.+++..++=+|+
T Consensus 203 ~~eL~~lk~~l~ 214 (312)
T smart00787 203 PTELDRAKEKLK 214 (312)
T ss_pred HHHHHHHHHHHH
Confidence 888888774443
No 20
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=47.30 E-value=30 Score=23.50 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 030983 113 AEGKSLKESERLEKEIAEVRELK 135 (168)
Q Consensus 113 ~~~~s~~rI~~l~~eL~~i~~~~ 135 (168)
-+.+.++||+-|+.|++.++..+
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAEL 48 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777655
No 21
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=47.26 E-value=1.5e+02 Score=24.62 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcchHHHHHHhhh
Q 030983 103 FDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRN 163 (168)
Q Consensus 103 e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~~I~~ 163 (168)
-..+..++.........++..|++.|.+-+--...++. +++--..-.-||.+-||+.|.+
T Consensus 145 L~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~-~LeQK~kEn~ELtkICDeLI~k 204 (207)
T PF05010_consen 145 LEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEE-SLEQKTKENEELTKICDELISK 204 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555666666665554443322222 3344444556788888888865
No 22
>PF08984 DUF1858: Domain of unknown function (DUF1858); InterPro: IPR015077 This protein has no known function. It is found in various hypothetical bacterial proteins. ; PDB: 2K53_A 2K5E_A 2FI0_A.
Probab=47.00 E-value=17 Score=23.65 Aligned_cols=20 Identities=35% Similarity=0.394 Sum_probs=16.1
Q ss_pred cCCHHHhHHhCCcchHHHHH
Q 030983 140 TMTAEEYFEKHPELKKKFDD 159 (168)
Q Consensus 140 ~mT~dd~~~a~Pe~~~~v~~ 159 (168)
+||+.|+...||++.+-+-+
T Consensus 4 ~~~I~el~~~yP~~~~il~~ 23 (59)
T PF08984_consen 4 DMTIYELLEQYPELIEILVS 23 (59)
T ss_dssp TSBHHHHHHH-GGGHHHHHH
T ss_pred cCCHHHHHHHCHHHHHHHHH
Confidence 68999999999999876644
No 23
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=45.12 E-value=91 Score=24.11 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHH
Q 030983 106 LLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFE 148 (168)
Q Consensus 106 ~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~ 148 (168)
++.+-.+-.....+++++-+..|+.|+.++ --..+|++|++.
T Consensus 36 vv~er~ee~~~~~~~~~er~~kl~~~r~~m-~~~Gis~~eL~~ 77 (135)
T PRK10947 36 VVNERREEESAAAAEVEERTRKLQQYREML-IADGIDPNELLN 77 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHhc
Confidence 334444444455566777777888898888 778899999965
No 24
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=44.13 E-value=69 Score=25.89 Aligned_cols=39 Identities=28% Similarity=0.435 Sum_probs=26.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030983 97 PEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELK 135 (168)
Q Consensus 97 ~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~ 135 (168)
.+++.-+..+...+..+..+.+.+|++|+.+++.+++..
T Consensus 105 qeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~ 143 (171)
T PF04799_consen 105 QELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQ 143 (171)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667777778888888888888888888877764
No 25
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=43.68 E-value=1.6e+02 Score=25.47 Aligned_cols=50 Identities=28% Similarity=0.322 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcch
Q 030983 105 ALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELK 154 (168)
Q Consensus 105 ~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~ 154 (168)
+....+.+....+..+-+.|+.++.++++.....+....+++....=+|.
T Consensus 170 ~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~ 219 (325)
T PF08317_consen 170 KQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELA 219 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHH
Confidence 34445556666777777888888888888875677777777777665543
No 26
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=42.83 E-value=73 Score=20.38 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030983 108 VELKEAEGKSLKESERLEKEIAEVRE 133 (168)
Q Consensus 108 ~~a~~~~~~s~~rI~~l~~eL~~i~~ 133 (168)
.++++-++.++.+|++|++.-..+-+
T Consensus 15 d~IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 15 DNIEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777766554433
No 27
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=41.61 E-value=78 Score=29.68 Aligned_cols=114 Identities=18% Similarity=0.243 Sum_probs=68.7
Q ss_pred hc-CCHHHHHHHHHHHhhHHHHHHHHhhh-------cCCCCCcCCHHHHhcccC--hHHHHHHHHHhhccccccccCccc
Q 030983 27 ML-VSDEARKEFATLRRAFDEVNSTLQTK-------FSQEPEPIDWEYYRKGIG--SRLVDMYKQAYESIEVPKYVDKVT 96 (168)
Q Consensus 27 ~l-vp~~~~~~l~afK~r~~~~~~~l~~~-------~pe~pp~IDwa~Yk~~l~--~~lVD~feK~y~s~kvp~~~d~~~ 96 (168)
.| +.|++...|..+++.++++....... --+..-...|-.=+..+. -.+++..+..+..+.=-. ..+
T Consensus 55 ~l~l~Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l---~~l 131 (569)
T PRK04778 55 KLNLTGQSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEEL---QEL 131 (569)
T ss_pred cCCCCcccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 44 78999999999999998865433211 122333445555556665 567777777766553100 122
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhccccccCCH
Q 030983 97 PEYKSKFDALLVELKEAEGKSLKES-----------ERLEKEIAEVRELKEKISTMTA 143 (168)
Q Consensus 97 ~~i~a~e~~~~~~a~~~~~~s~~rI-----------~~l~~eL~~i~~~~~P~e~mT~ 143 (168)
...+..-...+..++..-..+.+.+ ..|++.|++|+...+-|+++|-
T Consensus 132 ~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~ 189 (569)
T PRK04778 132 LESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTE 189 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444455555555555555553 6788888888887777777764
No 28
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=41.10 E-value=1.3e+02 Score=23.66 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=15.0
Q ss_pred CcCCHHHHhcccC---hHHHHHHHHHhhcc
Q 030983 60 EPIDWEYYRKGIG---SRLVDMYKQAYESI 86 (168)
Q Consensus 60 p~IDwa~Yk~~l~---~~lVD~feK~y~s~ 86 (168)
..|||+..-+.|+ ..-+..|.+.+..+
T Consensus 8 ~aidWa~l~~~vp~~~~~~~~afk~r~d~~ 37 (161)
T PF05873_consen 8 SAIDWAKLAERVPPEQKAQFQAFKKRSDEY 37 (161)
T ss_dssp ----HHHHHTTS-GGGHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 4699999888887 35556666665544
No 29
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=40.79 E-value=91 Score=24.80 Aligned_cols=14 Identities=7% Similarity=0.273 Sum_probs=10.2
Q ss_pred CCCCCcCCHHHHhc
Q 030983 56 SQEPEPIDWEYYRK 69 (168)
Q Consensus 56 pe~pp~IDwa~Yk~ 69 (168)
-...|.|||.+|=+
T Consensus 19 ~~gmp~ld~~t~~~ 32 (181)
T PRK13454 19 APGMPQLDFSTFPN 32 (181)
T ss_pred CCCCCCCcHHhcch
Confidence 45678899987653
No 30
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=40.49 E-value=72 Score=24.48 Aligned_cols=47 Identities=13% Similarity=0.018 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHH
Q 030983 99 YKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEE 145 (168)
Q Consensus 99 i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd 145 (168)
++..+..+..++.+.....+.+++.|+..++.+++....|-+-..++
T Consensus 19 ~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~e 65 (149)
T PF07352_consen 19 IARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAEANRDE 65 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHh
Confidence 44455566666667777777777788888888877774443333333
No 31
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=39.99 E-value=29 Score=24.35 Aligned_cols=30 Identities=13% Similarity=0.314 Sum_probs=26.9
Q ss_pred ccCCHHHhHHhCCcchHHHHHHhhhCCC-CC
Q 030983 139 STMTAEEYFEKHPELKKKFDDEIRNDYW-GY 168 (168)
Q Consensus 139 e~mT~dd~~~a~Pe~~~~v~~~I~~g~W-gy 168 (168)
=.|+.|+|..+.|-.-.-....+...+| ||
T Consensus 44 C~ms~e~F~~~~p~~GdiLy~~l~~~~~~~~ 74 (74)
T cd08539 44 CSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQ 74 (74)
T ss_pred HccCHHHHhhcCCchHHHHHHHHHHHhcCCC
Confidence 3689999999999999999999999999 76
No 32
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.51 E-value=27 Score=24.37 Aligned_cols=45 Identities=11% Similarity=0.181 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhccccccCCHHHhHHhCCcchHHHHHHhhhC
Q 030983 120 ESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRND 164 (168)
Q Consensus 120 rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~~I~~g 164 (168)
+-.+|...+...+..++|.++++++.+.+..=.++.++..++.+-
T Consensus 25 ~hn~LDd~I~~~E~n~~~~s~~ev~~LKKqkL~LKDEi~~~L~~a 69 (72)
T COG2841 25 KHNELDDRIKRAEGNRQPGSDAEVSNLKKQKLQLKDEIASILQKA 69 (72)
T ss_pred HHhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 445788888999999999999999999999988988888888753
No 33
>PHA01632 hypothetical protein
Probab=38.18 E-value=21 Score=24.01 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=22.5
Q ss_pred CHHHhHHhCCcchHHHHHHhhhCC
Q 030983 142 TAEEYFEKHPELKKKFDDEIRNDY 165 (168)
Q Consensus 142 T~dd~~~a~Pe~~~~v~~~I~~g~ 165 (168)
|-+++...-|.+-++...||+||+
T Consensus 29 teeelrkvlpkilkdyanmie~gk 52 (64)
T PHA01632 29 TEEELRKVLPKILKDYANMIENGK 52 (64)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCc
Confidence 778999999999999999999996
No 34
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=37.90 E-value=22 Score=29.56 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=22.9
Q ss_pred HHHhHHhCCcchHHHHHHhhhCCC
Q 030983 143 AEEYFEKHPELKKKFDDEIRNDYW 166 (168)
Q Consensus 143 ~dd~~~a~Pe~~~~v~~~I~~g~W 166 (168)
++++.+.+|+..+++.+.|++|+|
T Consensus 52 ~~~~~~~~p~~~~~~~~lv~~Gri 75 (275)
T PF01074_consen 52 LEDYLEDAPEEFKRIKKLVKEGRI 75 (275)
T ss_dssp HHHHHHCSGHHHHHHHHHHHTTSE
T ss_pred HHHHHHhCCHHHHHHHHHHHhcee
Confidence 589999999999999999999999
No 35
>PF02672 CP12: CP12 domain; InterPro: IPR003823 This entry represents an uncharacterised domain in proteins of unknown function. This domain is found associated with CBS domains in some proteins IPR000644 from INTERPRO.; PDB: 3B1K_I 3B1J_D 3RVD_N 3QV1_I 2LJ9_A.
Probab=35.90 E-value=24 Score=24.31 Aligned_cols=34 Identities=32% Similarity=0.467 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcch
Q 030983 119 KESERLEKEIAEVRELKEKISTMTAEEYFEKHPELK 154 (168)
Q Consensus 119 ~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~ 154 (168)
.++.+|+....+-+... + +...++.||+.+|+-.
T Consensus 31 deVEELqa~~~h~~~~~-~-~~~~lE~yC~~nPea~ 64 (71)
T PF02672_consen 31 DEVEELQAEASHQRQEK-K-DKTPLELYCDENPEAD 64 (71)
T ss_dssp ---------------------TTCHHHHHHHSTTST
T ss_pred HHHHHHHHHHHHccccC-C-CCCHHHHHHHHCCCcH
Confidence 34678888888887777 6 6778999999999853
No 36
>PRK09819 alpha-mannosidase; Provisional
Probab=35.50 E-value=25 Score=34.69 Aligned_cols=43 Identities=16% Similarity=0.313 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcc-cc----ccC-CHHHhHHhCCcchHHHHHHhhhCCC
Q 030983 124 LEKEIAEVRELKE-KI----STM-TAEEYFEKHPELKKKFDDEIRNDYW 166 (168)
Q Consensus 124 l~~eL~~i~~~~~-P~----e~m-T~dd~~~a~Pe~~~~v~~~I~~g~W 166 (168)
+...|..|++-+. +| .|+ -++|+.+.+|++.++|...|++|+|
T Consensus 33 ~~~vl~lle~~p~~~f~~~d~q~~~l~~~~~~~Pe~~~~ik~lV~~Grl 81 (875)
T PRK09819 33 MEEILDRLEQDNDYKYYVLDGQTSLLEDYLAVKPEDKERVKKLVQAGKL 81 (875)
T ss_pred HHHHHHHHHhCCCcceEEEchhHHHHHHHHHhChHHHHHHHHHHHcCCE
Confidence 3445555665441 23 232 4688999999999999999999999
No 37
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=35.00 E-value=91 Score=25.49 Aligned_cols=74 Identities=12% Similarity=0.182 Sum_probs=39.2
Q ss_pred CCcCCHHHHhcccC-hHHH-HHHHHHhhccccccccCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030983 59 PEPIDWEYYRKGIG-SRLV-DMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRE 133 (168)
Q Consensus 59 pp~IDwa~Yk~~l~-~~lV-D~feK~y~s~kvp~~~d~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~ 133 (168)
.|++|+.+|=+.+- ..+. =-|==..+.|-+| |..+.+..-...-...+.+++....+.+..+.++++.|.+-+.
T Consensus 44 ~p~~~~~~~~~~l~w~~I~FliL~~lL~k~~~~-pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~ 119 (204)
T PRK09174 44 FPPFDSTHYASQLLWLAITFGLFYLFMSRVILP-RIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARA 119 (204)
T ss_pred CCCCcchhccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999998876665 3221 0000011122222 4444444444444555566666666666666666666665543
No 38
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=33.54 E-value=36 Score=24.01 Aligned_cols=30 Identities=27% Similarity=0.241 Sum_probs=25.7
Q ss_pred ccCCHHHhHHhCCcchHHHHHHhhhCCC-CC
Q 030983 139 STMTAEEYFEKHPELKKKFDDEIRNDYW-GY 168 (168)
Q Consensus 139 e~mT~dd~~~a~Pe~~~~v~~~I~~g~W-gy 168 (168)
=.||.|||....|..-.-....+.+.+| |+
T Consensus 46 C~ms~eeF~~~~p~~GdvLy~~lq~~~~~~~ 76 (78)
T cd08538 46 CSMTQEEFIEAAGICGEYLYFILQNIRTQGY 76 (78)
T ss_pred HcCCHHHHHHHcccchHHHHHHHHHHHhcCc
Confidence 3689999999999988888888888888 53
No 39
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=32.95 E-value=25 Score=23.90 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=19.4
Q ss_pred HHHhccccccCCHHHhHHhCCcchHHHHHH
Q 030983 131 VRELKEKISTMTAEEYFEKHPELKKKFDDE 160 (168)
Q Consensus 131 i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~~ 160 (168)
++.-+ +++++|.+++....|.+.+++.+-
T Consensus 33 ~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~ 61 (70)
T PF14698_consen 33 EEEGK-PLSELTLEELQEISPEFEEDVREA 61 (70)
T ss_dssp HHTTS--GGGS-HHHHHHH-TT--GGGGGG
T ss_pred HHcCC-ChhhCCHHHHHHHhHHhHHHHHHH
Confidence 55667 899999999999999998776553
No 40
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=32.05 E-value=58 Score=23.65 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=19.9
Q ss_pred cccccCCHHHhHHhCCcchHHHHHHhhhC
Q 030983 136 EKISTMTAEEYFEKHPELKKKFDDEIRND 164 (168)
Q Consensus 136 ~P~e~mT~dd~~~a~Pe~~~~v~~~I~~g 164 (168)
.-++.||++|+.+..=++.+.+...|++.
T Consensus 55 kn~~~ms~~e~~k~~~ev~k~~~~~~~~m 83 (93)
T PF06518_consen 55 KNLSKMSVEERKKRREEVRKALEKRIKKM 83 (93)
T ss_dssp HHHTTS-HHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 36889999999988888888877766543
No 41
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=31.72 E-value=2.4e+02 Score=21.60 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030983 100 KSKFDALLVELKEAEGKSLKESERLEKEIAEVRELK 135 (168)
Q Consensus 100 ~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~ 135 (168)
..+.+++.++.+.+....++.|++.++.+.+++.+.
T Consensus 88 k~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~i~ 123 (126)
T PF09403_consen 88 KDEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEKIQ 123 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355588899999999999999999999999988664
No 42
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=31.25 E-value=2e+02 Score=22.14 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHH
Q 030983 114 EGKSLKESERLEKEIAEVRELKEKISTMTAEEYFE 148 (168)
Q Consensus 114 ~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~ 148 (168)
.+....+..+.+..|+.|+.+. --..+|++|++.
T Consensus 44 ~~~~~~~~~er~~~l~~i~~~~-~~~Git~eeL~~ 77 (134)
T PRK10328 44 EEQQQRELAERQEKINTWLELM-KADGINPEELLG 77 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhCCCHHHHhh
Confidence 3344455666777777788887 677889999964
No 43
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=31.25 E-value=1.4e+02 Score=28.45 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=21.5
Q ss_pred hhc-CCHHHHHHHHHHHhhHHHHHHHHh
Q 030983 26 KML-VSDEARKEFATLRRAFDEVNSTLQ 52 (168)
Q Consensus 26 ~~l-vp~~~~~~l~afK~r~~~~~~~l~ 52 (168)
+.| +.|++...|..-++.+++...++.
T Consensus 53 K~L~L~GQTe~~Fe~Wrq~W~di~~~~f 80 (570)
T COG4477 53 KKLHLTGQTETKFEEWRQKWDDIVTNSF 80 (570)
T ss_pred hcCcccCccHHHHHHHHHHHHHHHHhhc
Confidence 445 788999999999988888887654
No 44
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=30.01 E-value=1.5e+02 Score=23.33 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcchHHHHHHhhh
Q 030983 105 ALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRN 163 (168)
Q Consensus 105 ~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~~I~~ 163 (168)
+-....+..+...+.+|.+-+++|..+...= +..=--+|++.+.--|++++++.+|.-
T Consensus 54 r~~~~~~~~v~~~~~~i~~k~~El~~L~~~d-~~kv~~~E~L~d~v~eLkeel~~el~~ 111 (146)
T PF05852_consen 54 REECEIKNKVSSLETEISEKKKELSHLKKFD-RKKVEDLEKLTDRVEELKEELEFELER 111 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777788888888888888887754 555445788888888888888888753
No 45
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=29.84 E-value=72 Score=24.16 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=21.1
Q ss_pred HHHHHhccccccCCHHHhHHhCCcchHHHHH
Q 030983 129 AEVRELKEKISTMTAEEYFEKHPELKKKFDD 159 (168)
Q Consensus 129 ~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~ 159 (168)
.++.+++ -|.+.=.+++..+||++...++.
T Consensus 98 GK~~a~~-~fr~~L~~el~~~fPe~~~~~~~ 127 (128)
T PF09748_consen 98 GKMEAFK-SFRDVLAEELASAFPELKEDVRR 127 (128)
T ss_pred HHHHHHH-HHHHHHHHHHHHHChHHHHHHhh
Confidence 3444444 44465678999999999988763
No 46
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=29.82 E-value=2e+02 Score=21.99 Aligned_cols=34 Identities=9% Similarity=0.128 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 030983 106 LLVELKEAEGKSLKESERLEKEIAEVRELKEKIST 140 (168)
Q Consensus 106 ~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~ 140 (168)
.++++.++.++.++....+++.|+++.+.. ++.+
T Consensus 4 ~~kEi~~l~~~lk~~~~~i~ailek~~s~~-~~~e 37 (121)
T PF03310_consen 4 IIKEISELIQELKKIESDIKAILEKLQSTE-QDQE 37 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-chHH
Confidence 345555666666666667777777777666 5433
No 47
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=29.45 E-value=2.1e+02 Score=21.86 Aligned_cols=54 Identities=11% Similarity=0.250 Sum_probs=38.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcch
Q 030983 97 PEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELK 154 (168)
Q Consensus 97 ~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~ 154 (168)
+.+..+-.++-+....+......||..+...|+...+.- +.|-+|+.+.+-++.
T Consensus 46 ~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~----~~i~~eV~~v~~dv~ 99 (126)
T PF07889_consen 46 ASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEIS----KQIKDEVTEVREDVS 99 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHhhHH
Confidence 345555556666777788888888888888887777666 567777777665554
No 48
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=28.80 E-value=27 Score=30.44 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=23.1
Q ss_pred CCCchhHHHHHHHhhhhhccHHHHHhhcCCHHHHHHHHHHH
Q 030983 1 MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLR 41 (168)
Q Consensus 1 ~~~~~~~~~~~a~~a~~~idWa~~~~~lvp~~~~~~l~afK 41 (168)
|||+||.|+-.+.. -..|= .+.+ +||+-.+.|..+.
T Consensus 9 lSGAGKsvAl~~lE---DlGyy-cvDN-LPp~Llp~~~~~~ 44 (286)
T COG1660 9 LSGAGKSVALRVLE---DLGYY-CVDN-LPPQLLPKLADLM 44 (286)
T ss_pred CCCCcHHHHHHHHH---hcCee-eecC-CCHHHHHHHHHHH
Confidence 89999999932221 22221 1245 8998888888776
No 49
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=28.64 E-value=2.2e+02 Score=25.72 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=45.3
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcCCCCCcCCHHHHhcccC-----hHHHHHHHHHhhccccccccCccchhhhhHHHHHHH
Q 030983 34 RKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIG-----SRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLV 108 (168)
Q Consensus 34 ~~~l~afK~r~~~~~~~l~~~~pe~pp~IDwa~Yk~~l~-----~~lVD~feK~y~s~kvp~~~d~~~~~i~a~e~~~~~ 108 (168)
...|..+..|++++...|.. |+ ---|.+-|++.-+ ..+|+.|.+ |+...-..-..+..-. +..-.++..
T Consensus 6 ~~kl~~~~~r~~el~~~L~~--p~--v~~d~~~~~~lske~a~l~~iv~~~~~-~~~~~~~l~~a~~~l~-~~~D~em~e 79 (363)
T COG0216 6 LEKLESLLERYEELEALLSD--PE--VISDPDEYRKLSKEYAELEPIVEKYRE-YKKAQEDLEDAKEMLA-EEKDPEMRE 79 (363)
T ss_pred HHHHHHHHHHHHHHHHHhcC--cc--cccCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-ccCCHHHHH
Confidence 34567777777777777663 33 3457888877665 245554442 2221100000000000 000113334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030983 109 ELKEAEGKSLKESERLEKEIAEV 131 (168)
Q Consensus 109 ~a~~~~~~s~~rI~~l~~eL~~i 131 (168)
-+++=+.+.+.+|.+|+++|+.+
T Consensus 80 ma~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 80 MAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555666666667777666654
No 50
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=28.17 E-value=2.5e+02 Score=20.77 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=15.0
Q ss_pred HhCCcc-hHHHHHHhhhCCC
Q 030983 148 EKHPEL-KKKFDDEIRNDYW 166 (168)
Q Consensus 148 ~a~Pe~-~~~v~~~I~~g~W 166 (168)
=..|+. .++|+++|..|.|
T Consensus 125 i~~~~~tdeei~~~~~~~~~ 144 (151)
T cd00179 125 ITGGEATDEELEDMLESGNS 144 (151)
T ss_pred HcCCCCChHHHHHHHHcCCh
Confidence 356764 7889999999988
No 51
>PF10743 Phage_Cox: Regulatory phage protein cox; InterPro: IPR019679 Phage Cox proteins are expressed by Enterobacteria phages. The Cox protein is a 79-residue basic protein with a predicted strong helix-turn-helix DNA-binding motif. It inhibits integrative recombination and it activates site-specific excision of the HP1 genome from the Haemophilus influenzae chromosome, Hp1. Cox appears to function as a tetramer. Cox binding sites consist of two direct repeats of the consensus motif 5'-GGTMAWWWWA, one Cox tetramer binding to each motif. Cox binding interferes with the interaction of HP1 integrase with one of its binding sites, IBS5. This competition is central to directional control. Both Cox binding sites are needed for full inhibition of integration and for activating excision, because it plays a positive role in assembling the nucleoprotein complexes that produce excisive recombination, by inducing the formation of a critical conformation in those complexes [].
Probab=28.15 E-value=63 Score=23.39 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=26.7
Q ss_pred ccccCCHHHhHHhCCcchHHHHHHhhhCC
Q 030983 137 KISTMTAEEYFEKHPELKKKFDDEIRNDY 165 (168)
Q Consensus 137 P~e~mT~dd~~~a~Pe~~~~v~~~I~~g~ 165 (168)
|.+-+|++.|+..-=-...-|..||++|+
T Consensus 9 p~d~v~~~~FA~~IGKt~sAVr~Mi~~gK 37 (87)
T PF10743_consen 9 PSDAVTYEKFAEYIGKTPSAVRKMIKAGK 37 (87)
T ss_pred hccccCHHHHHHHHCCCHHHHHHHHHcCC
Confidence 88899999999998888899999999997
No 52
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=28.10 E-value=3e+02 Score=22.20 Aligned_cols=52 Identities=10% Similarity=0.198 Sum_probs=35.9
Q ss_pred HHHHHHHHhhccccccccCccchhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Q 030983 75 LVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVEL-KEAEGKSLKESERLEKEIAEVRELK 135 (168)
Q Consensus 75 lVD~feK~y~s~kvp~~~d~~~~~i~a~e~~~~~~a-~~~~~~s~~rI~~l~~eL~~i~~~~ 135 (168)
.|++||+....+ +........+.++.. +.+...+..+|-+++.++..|...+
T Consensus 49 ~veeLe~~~~q~---------~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i 101 (165)
T PF09602_consen 49 QVEELEKELKQF---------KREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKI 101 (165)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888887766 333444445555555 5677778888888888888877765
No 53
>PHA03161 hypothetical protein; Provisional
Probab=28.02 E-value=1.5e+02 Score=23.53 Aligned_cols=60 Identities=17% Similarity=0.100 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcchHHHHHHhh
Q 030983 102 KFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIR 162 (168)
Q Consensus 102 ~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~~I~ 162 (168)
..-+-...++..+..++.+|.+.++|++-+...= |=.=--+|++.++--|++.+++-+|.
T Consensus 51 ~~~~~~~~i~~~v~~l~~~I~~k~kE~~~L~~fd-~kkl~~~E~L~drv~eLkeel~~ELe 110 (150)
T PHA03161 51 ENLKKQKSIEGMLQAVDLSIQEKKKELSLLKAFD-RHKLSAAEDLQDKILELKEDIHFEIE 110 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455677788888888989888888777643 22222367888888888888888873
No 54
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=27.66 E-value=2.6e+02 Score=24.53 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcchHHHHHH
Q 030983 114 EGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDE 160 (168)
Q Consensus 114 ~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~~ 160 (168)
...|+-||++|+.+|+--++.-+-+.. ..+++.+.--++.++|+-|
T Consensus 231 ~q~s~Gria~Le~eLAmQKs~seElks-sq~eL~dfm~eLdedVEgm 276 (330)
T KOG2991|consen 231 HQASEGRIAELEIELAMQKSQSEELKS-SQEELYDFMEELDEDVEGM 276 (330)
T ss_pred hhhhcccHHHHHHHHHHHHhhHHHHHH-hHHHHHHHHHHHHHHHhcc
Confidence 455778899999999866654422222 4455555555677777654
No 55
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=27.47 E-value=2.9e+02 Score=27.54 Aligned_cols=78 Identities=14% Similarity=0.071 Sum_probs=46.7
Q ss_pred CCCCcCCHHHHhcccC-hHHHHHHHHHhhccccccccCccchhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 030983 57 QEPEPIDWEYYRKGIG-SRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEG-KSLKESERLEKEIAEVREL 134 (168)
Q Consensus 57 e~pp~IDwa~Yk~~l~-~~lVD~feK~y~s~kvp~~~d~~~~~i~a~e~~~~~~a~~~~~-~s~~rI~~l~~eL~~i~~~ 134 (168)
.....=+|+-||.-|= -++||.+...++.....-..+.+.. .-.+++. ...+-++..++-|.-++++
T Consensus 720 ~~~~~~~f~~~KP~Lif~gLVD~l~~~fkk~~t~~~~~~w~~-----------~l~e~ir~Nd~~~l~~~~~ll~~~eEl 788 (802)
T PF13764_consen 720 ADKSEKLFAIYKPMLIFFGLVDQLYNMFKKNVTGNTEEGWPV-----------SLAEYIRHNDEAMLEAAKKLLEWFEEL 788 (802)
T ss_pred cccchhhHHHhhhHHHHHHHHHHHHHHHhcCCCCCCccchhH-----------HHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 4455568999999999 9999999988866542222222211 1122222 3333445555666666667
Q ss_pred ccccccCCHHHhHH
Q 030983 135 KEKISTMTAEEYFE 148 (168)
Q Consensus 135 ~~P~e~mT~dd~~~ 148 (168)
. |+++ ++||++
T Consensus 789 l-~~es--~~Ef~D 799 (802)
T PF13764_consen 789 L-PCES--FQEFCD 799 (802)
T ss_pred c-cCCC--HHHHhc
Confidence 7 7765 555554
No 56
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.46 E-value=77 Score=27.64 Aligned_cols=62 Identities=19% Similarity=0.151 Sum_probs=41.0
Q ss_pred hhhccHHHHHhhcCCHHHHHHHHHHHhhHHHHHHHHhhh--cCCCCCcC--CHHHHhcccChHHHH
Q 030983 16 GRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTK--FSQEPEPI--DWEYYRKGIGSRLVD 77 (168)
Q Consensus 16 ~~~idWa~~~~~lvp~~~~~~l~afK~r~~~~~~~l~~~--~pe~pp~I--Dwa~Yk~~l~~~lVD 77 (168)
...+=|+--.--|.|.++.+.=+++.|.+.++..-.++- |.-..|.| ||.|||..|+.-.|+
T Consensus 103 v~~llg~L~~~pl~~~~~l~~~QalaKQfAeil~F~LrFDelKM~tpaIqNDfSYYRRt~sr~rv~ 168 (321)
T KOG3951|consen 103 VPIILGSLSSGPLPLEEQLANKQALAKQFAEILHFTLRFDELKMRTPAIQNDFSYYRRTLSRMRVY 168 (321)
T ss_pred HHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHheehhhhhhccChhhccchHHHHHHHHHHHhc
Confidence 334555544444455677778888888888877655432 45566666 999999988844443
No 57
>cd05535 POLBc_epsilon DNA polymerase type-B epsilon subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase (Pol) epsilon has been proposed to play a role in elongation of the leading strand during DNA replication. Pol epsilon might also have a role in DNA repair. The structure of pol epsilon is characteristic of this family with the exception that it contains a large c-terminal domain with an unclear function. Phylogenetic analyses indicate that Pol epsilon is the ortholog to the archaeal Pol B3 rather than to Pol alpha, delta, or zeta. This might be because pol epsilon is ancestral to both archaea and eukaryotes DNA polymerases type B.
Probab=27.20 E-value=23 Score=34.02 Aligned_cols=12 Identities=50% Similarity=1.270 Sum_probs=10.6
Q ss_pred cCCHHHHhcccC
Q 030983 61 PIDWEYYRKGIG 72 (168)
Q Consensus 61 ~IDwa~Yk~~l~ 72 (168)
-|||+||+..|.
T Consensus 595 iiDW~YY~~rl~ 606 (621)
T cd05535 595 IIDWDYYIERLG 606 (621)
T ss_pred hhchHHHHHHHH
Confidence 489999999887
No 58
>PF11831 Myb_Cef: pre-mRNA splicing factor component; InterPro: IPR021786 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 73 to 279 amino acids in length.
Probab=27.00 E-value=3.3e+02 Score=22.64 Aligned_cols=99 Identities=20% Similarity=0.249 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhhcCCCCCcCCHH--------------HHhcccChHHHHHHHHHhhccccccccCc---
Q 030983 32 EARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWE--------------YYRKGIGSRLVDMYKQAYESIEVPKYVDK--- 94 (168)
Q Consensus 32 ~~~~~l~afK~r~~~~~~~l~~~~pe~pp~IDwa--------------~Yk~~l~~~lVD~feK~y~s~kvp~~~d~--- 94 (168)
.....-..|++|+..+++.|=| |..||=. .....|..+++.-+ .|.+++.|.+..+
T Consensus 115 ~~~~e~~e~~rRSqvvQR~LPR-----P~~v~~~~L~~~~~~~~~~~~~ae~lI~~Em~~Ll--~~D~~~~P~~~~~~~~ 187 (231)
T PF11831_consen 115 REEEEEKELKRRSQVVQRGLPR-----PSEVNESILRPAENPALTELDEAEELIKQEMATLL--KHDAIKYPVPGGKPKG 187 (231)
T ss_pred HHHHHHHHHHHhhHHHHccCCC-----CCcccHHHHHhhcccCCcchHHHHHHHHHHHHHHH--HhHhhhCCCCCCCCCC
Confidence 3445556777776666665543 3334422 22233333333333 2677777776554
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHH
Q 030983 95 VTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFE 148 (168)
Q Consensus 95 ~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~ 148 (168)
....++.+..+.+..|.+. +..|++.++... .-.+.+.|+|.+
T Consensus 188 ~~~~~e~~~~e~l~~A~~l----------i~~E~~~~~~~~-~~~~~~~~~~~~ 230 (231)
T PF11831_consen 188 KAPPYEDFSDEDLAEAREL----------IQAEMEVVKGGM-GHGDLSLEAYTQ 230 (231)
T ss_pred CCCCcCCCCHHHHHHHHHH----------HHHHHHHhcccc-ccccccHhhhhc
Confidence 2345666777777666654 456777777777 777777777653
No 59
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=26.87 E-value=83 Score=23.49 Aligned_cols=73 Identities=18% Similarity=0.358 Sum_probs=24.0
Q ss_pred CHHHHhcccChHHHHHHHHHhhccc-ccc---ccCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030983 63 DWEYYRKGIGSRLVDMYKQAYESIE-VPK---YVDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELK 135 (168)
Q Consensus 63 Dwa~Yk~~l~~~lVD~feK~y~s~k-vp~---~~d~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~ 135 (168)
|..-|.+.+..+||+-+-+.|..|= ..- ..+..+..+..--..+...+......+...+.+++..|+..+..+
T Consensus 34 dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~ 110 (133)
T PF06148_consen 34 DLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELR 110 (133)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888889988888888873 322 234455556666666666666777777777777777666666555
No 60
>PLN02372 violaxanthin de-epoxidase
Probab=26.81 E-value=2e+02 Score=26.59 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=7.7
Q ss_pred hHHHHHHHHHhh
Q 030983 73 SRLVDMYKQAYE 84 (168)
Q Consensus 73 ~~lVD~feK~y~ 84 (168)
|.|||.++|..+
T Consensus 360 p~l~~~l~~~~e 371 (455)
T PLN02372 360 PPLLERLEKDVE 371 (455)
T ss_pred chHHHHHHHHHH
Confidence 667777776643
No 61
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=26.80 E-value=3.3e+02 Score=21.75 Aligned_cols=64 Identities=11% Similarity=-0.011 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhcccccccc-CccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHH
Q 030983 74 RLVDMYKQAYESIEVPKYV-DKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFE 148 (168)
Q Consensus 74 ~lVD~feK~y~s~kvp~~~-d~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~ 148 (168)
+.-+.|+..+.+|++|+.- .+++ ..+.+-+...+.+|+.|..+-+..-+-.-||-..|-.+..-
T Consensus 51 er~~~ieNdlg~~~~~~~g~kk~~-----------~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~ 115 (157)
T COG3352 51 ERMTDIENDLGKVKIEIEGQKKQL-----------QDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRG 115 (157)
T ss_pred HHHHHHHhhcccccccccchhhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHH
Confidence 4557788888888887743 2333 33444455555666666666666655444776666555433
No 62
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=26.57 E-value=4.5e+02 Score=23.18 Aligned_cols=106 Identities=16% Similarity=0.175 Sum_probs=57.9
Q ss_pred HHHHhhcCCHHHHHHHHHHHhhHHHHHHHHhhhcCCCCCcCCH---HHHhcccC-h---HHHHHHHHHhhccccccccCc
Q 030983 22 EGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDW---EYYRKGIG-S---RLVDMYKQAYESIEVPKYVDK 94 (168)
Q Consensus 22 a~~~~~lvp~~~~~~l~afK~r~~~~~~~l~~~~pe~pp~IDw---a~Yk~~l~-~---~lVD~feK~y~s~kvp~~~d~ 94 (168)
+.|... +|++.+..+..++.+-+..-+- --|+||- ..-|.+.. . .|++.+.....+|.--
T Consensus 33 s~~l~~-ip~~~~~~l~~lq~~L~~kI~I-------vspAIDLIel~aaRGNt~Lesal~L~~~L~~eI~~f~~~----- 99 (302)
T PF05508_consen 33 SRFLKK-IPDKDRKELEKLQRRLESKIKI-------VSPAIDLIELIAARGNTSLESALPLTKDLRREIDSFDER----- 99 (302)
T ss_pred HHHHHh-CCHHHHHHHHHHHHHHHhhhhc-------cccHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHH-----
Confidence 567777 9999998888888655443333 2356663 33344433 2 3445555444333110
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCH
Q 030983 95 VTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTA 143 (168)
Q Consensus 95 ~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~ 143 (168)
+..+...+ +....-+.....++.-+..++.-|..|+... ||=+|.+
T Consensus 100 -l~~~~~~~-e~~~~~~~~~~~i~~V~~~ik~LL~rId~ai-PlinLal 145 (302)
T PF05508_consen 100 -LEEAAEKE-ELSKSSENQKESIKKVERYIKDLLARIDDAI-PLINLAL 145 (302)
T ss_pred -HHHHHHhh-hhccCcchhHHHHHHHHHHHHHHHHHHHhhc-chHHHHH
Confidence 00000000 0011223455556666777888899999999 9876643
No 63
>COG5293 Predicted ATPase [General function prediction only]
Probab=25.15 E-value=1.6e+02 Score=27.78 Aligned_cols=53 Identities=19% Similarity=0.134 Sum_probs=39.2
Q ss_pred CHHHHhcccC-hHH--HHHHHHHhhccccccc--cCccchhhhhHHHHHHHHHHHHHH
Q 030983 63 DWEYYRKGIG-SRL--VDMYKQAYESIEVPKY--VDKVTPEYKSKFDALLVELKEAEG 115 (168)
Q Consensus 63 Dwa~Yk~~l~-~~l--VD~feK~y~s~kvp~~--~d~~~~~i~a~e~~~~~~a~~~~~ 115 (168)
-|..|++.++ ..+ -|++++.|+.+-+-+| +-+-...+.+|-..++++=-.|.+
T Consensus 284 ~~~~~~~slk~~~~~~pd~i~~~ye~vg~~fpg~Vkk~~e~v~~F~r~~~e~R~~yl~ 341 (591)
T COG5293 284 HWKRVKTSLKEQILFCPDEIQVLYEEVGVLFPGQVKKDFEHVIAFNRAITEERHDYLQ 341 (591)
T ss_pred HHHHHhhcchhhccCChHHHHHHHHHhhhcChHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5889999998 443 3999999999987666 446677788888777766555443
No 64
>COG2306 Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]
Probab=25.01 E-value=78 Score=25.83 Aligned_cols=35 Identities=14% Similarity=0.271 Sum_probs=30.5
Q ss_pred HHHhccccccCCHHHhHHhCCcchHHHHHHhhhCCCC
Q 030983 131 VRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWG 167 (168)
Q Consensus 131 i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~~I~~g~Wg 167 (168)
++.+. ...++|-+++..|+- .+..|+.+++||..|
T Consensus 128 L~~Al-~~GlIT~~qf~~Ay~-~a~aVe~elr~g~~~ 162 (183)
T COG2306 128 LEDAL-RYGLITPEQFEKAYR-TANAVEAELRNGKFP 162 (183)
T ss_pred HHHHH-HcCCCCHHHHHHHHH-HHHHHHHHHhcCCcc
Confidence 55666 788999999999997 999999999999863
No 65
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=24.78 E-value=66 Score=24.19 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCHHHhHHhC
Q 030983 116 KSLKESERLEKEIAEVRELKEKISTMTAEEYFEKH 150 (168)
Q Consensus 116 ~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~ 150 (168)
...-+|.+|+.+|.+++..-..+..+-+|.|.+.|
T Consensus 4 QmElrIkdLeselsk~Ktsq~d~~~~eLEkYkqly 38 (111)
T PF12001_consen 4 QMELRIKDLESELSKMKTSQEDSNKTELEKYKQLY 38 (111)
T ss_pred HHHHHHHHHHHHHHHhHhHhhhhhHHHHHHHHHHH
Confidence 35678999999999999444377777777777666
No 66
>PF13166 AAA_13: AAA domain
Probab=24.76 E-value=3.7e+02 Score=25.37 Aligned_cols=52 Identities=19% Similarity=0.432 Sum_probs=25.5
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcCCCCCcCCHHHHhcccC--hHHHHHHHHHhhc
Q 030983 34 RKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIG--SRLVDMYKQAYES 85 (168)
Q Consensus 34 ~~~l~afK~r~~~~~~~l~~~~pe~pp~IDwa~Yk~~l~--~~lVD~feK~y~s 85 (168)
...+.+++...+.....|..+....-.+|++..+...+. ..+++.+....+.
T Consensus 328 ~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~ 381 (712)
T PF13166_consen 328 KSAIEALKEELEELKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEE 381 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666665322223455544433332 3444444444433
No 67
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=24.63 E-value=2.7e+02 Score=21.37 Aligned_cols=10 Identities=10% Similarity=0.338 Sum_probs=3.9
Q ss_pred HHhhcccccc
Q 030983 81 QAYESIEVPK 90 (168)
Q Consensus 81 K~y~s~kvp~ 90 (168)
+.+..++||-
T Consensus 4 ~~l~~~~~Pp 13 (160)
T PF13094_consen 4 RRLARLPFPP 13 (160)
T ss_pred hhCCCCCCCc
Confidence 3344434333
No 68
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.63 E-value=1.5e+02 Score=19.67 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030983 115 GKSLKESERLEKEIAEVR 132 (168)
Q Consensus 115 ~~s~~rI~~l~~eL~~i~ 132 (168)
.-++.++.++.++++.|+
T Consensus 17 ~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 17 NTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444333
No 69
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=24.59 E-value=6.8e+02 Score=24.61 Aligned_cols=46 Identities=17% Similarity=0.335 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHHhhhcCCCCCcCCHHHHhcccC--------hHHHHHHHHHhhcccc
Q 030983 29 VSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIG--------SRLVDMYKQAYESIEV 88 (168)
Q Consensus 29 vp~~~~~~l~afK~r~~~~~~~l~~~~pe~pp~IDwa~Yk~~l~--------~~lVD~feK~y~s~kv 88 (168)
++++.+..|+.|+ ......||+..|...+. +.+.++++..-.++..
T Consensus 587 L~~~~~~~L~~~~--------------~s~l~~~~~~~~~~~l~~~~t~~dL~~~a~~L~~la~~~~~ 640 (806)
T PF05478_consen 587 LTPEEKRNLEDLR--------------NSGLSDIDFSLYLEQLCKPLTPVDLPSLANQLEALANSLPN 640 (806)
T ss_pred cCHHHHHHHHHHH--------------hCCCccCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 5666666666665 23455677777765443 3556777766655553
No 70
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=24.45 E-value=1.3e+02 Score=20.01 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030983 106 LLVELKEAEGKSLKESERLEKEIAEVRELK 135 (168)
Q Consensus 106 ~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~ 135 (168)
....|..-..+|+.+|.-|+.+|..+....
T Consensus 34 ~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~ 63 (70)
T PF02185_consen 34 VLSEAESQLRESNQKIELLREQLEKLQQRS 63 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567788889999999999999999998776
No 71
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=24.33 E-value=3.2e+02 Score=22.66 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=31.8
Q ss_pred hcCCCCCcCCH-HHHhc-ccC-hHHHHHHHHHhhccc-cccccCccch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030983 54 KFSQEPEPIDW-EYYRK-GIG-SRLVDMYKQAYESIE-VPKYVDKVTP-EYKSKFDALLVELKEAEGKSLKESERLEKEI 128 (168)
Q Consensus 54 ~~pe~pp~IDw-a~Yk~-~l~-~~lVD~feK~y~s~k-vp~~~d~~~~-~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL 128 (168)
++|..+|.+|+ ..-+= ... ..++..++...+.+. -|...+..+. .+..++++ ..+..+|..|+.+|
T Consensus 195 r~~~giP~LDPi~DmkI~d~~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k---------~~l~~~i~~Lk~~l 265 (268)
T PF13234_consen 195 RFPDGIPLLDPIKDMKIKDPEFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEK---------AELQEEIKALKRQL 265 (268)
T ss_dssp HSSS--TCHHCHHHH----HHHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred hCCCCCCccChHHhCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHH---------HHHHHHHHHHHHHH
Confidence 37999999998 44331 112 455555555554553 4555554332 22322222 33455566666555
Q ss_pred H
Q 030983 129 A 129 (168)
Q Consensus 129 ~ 129 (168)
.
T Consensus 266 ~ 266 (268)
T PF13234_consen 266 S 266 (268)
T ss_dssp H
T ss_pred h
Confidence 4
No 72
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=24.06 E-value=35 Score=29.76 Aligned_cols=35 Identities=26% Similarity=0.688 Sum_probs=28.9
Q ss_pred hccccccCCHHHhHHhCCcchHHHHHHhhh--CCCCC
Q 030983 134 LKEKISTMTAEEYFEKHPELKKKFDDEIRN--DYWGY 168 (168)
Q Consensus 134 ~~~P~e~mT~dd~~~a~Pe~~~~v~~~I~~--g~Wgy 168 (168)
||+-+--||+|++++-+-+|.+.|.++|.+ +-|||
T Consensus 107 mRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~ 143 (301)
T KOG2620|consen 107 MRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGY 143 (301)
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 444556899999999999999999999976 45665
No 73
>COG2916 Hns DNA-binding protein H-NS [General function prediction only]
Probab=24.03 E-value=3.3e+02 Score=21.02 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhH
Q 030983 105 ALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYF 147 (168)
Q Consensus 105 ~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~ 147 (168)
+++..=.+-.+....+|.+...++..|.+++ --+.+|.+++.
T Consensus 29 q~~~~r~~e~~~~~~~i~e~~~~~~~~~e~~-~k~~i~~~el~ 70 (128)
T COG2916 29 QVVQERQEEEAAAIAEIEERQEKYGTIRELL-IKDGITPEELL 70 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCHHHHh
Confidence 3344444555667778888999999999999 99999999983
No 74
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=23.99 E-value=92 Score=18.05 Aligned_cols=25 Identities=24% Similarity=0.042 Sum_probs=18.7
Q ss_pred CCHHHhHHhCCcchHHHHHHhhhCC
Q 030983 141 MTAEEYFEKHPELKKKFDDEIRNDY 165 (168)
Q Consensus 141 mT~dd~~~a~Pe~~~~v~~~I~~g~ 165 (168)
||+.|+++..-=-...+..+|++|.
T Consensus 2 lt~~e~a~~lgis~~ti~~~~~~g~ 26 (49)
T TIGR01764 2 LTVEEAAEYLGVSKDTVYRLIHEGE 26 (49)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHcCC
Confidence 6788888777655677888887775
No 75
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=23.48 E-value=55 Score=23.04 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=16.7
Q ss_pred ccCCHHHhHHhCCcc-hHHHHHHh
Q 030983 139 STMTAEEYFEKHPEL-KKKFDDEI 161 (168)
Q Consensus 139 e~mT~dd~~~a~Pe~-~~~v~~~I 161 (168)
.-+|.||+++.||++ .++|.+-+
T Consensus 42 ~G~s~eeil~dyp~Lt~~dI~aal 65 (79)
T COG2442 42 AGESIEEILADYPDLTLEDIRAAL 65 (79)
T ss_pred CCCCHHHHHHhCCCCCHHHHHHHH
Confidence 467999999999987 44454433
No 76
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.44 E-value=1.1e+02 Score=20.23 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHh
Q 030983 108 VELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEY 146 (168)
Q Consensus 108 ~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~ 146 (168)
.....-.+..+.++.+|+.+++.+++-+.-.+..=.+.+
T Consensus 27 ~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~l 65 (80)
T PF04977_consen 27 AELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKL 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 344555556666667777777776333323343333333
No 77
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.36 E-value=2.5e+02 Score=23.05 Aligned_cols=54 Identities=9% Similarity=0.124 Sum_probs=21.8
Q ss_pred HHHHHHHHhhccccccccCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030983 75 LVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVREL 134 (168)
Q Consensus 75 lVD~feK~y~s~kvp~~~d~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~ 134 (168)
.+..+|++...++ ..+..++....+-..+..+..+.++..|.+|+.+.+.++..
T Consensus 94 rlp~le~el~~l~------~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~ 147 (206)
T PRK10884 94 RVPDLENQVKTLT------DKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQ 147 (206)
T ss_pred HHHHHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555444 12222333333333333333334444444444444444433
No 78
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=22.94 E-value=2.5e+02 Score=18.93 Aligned_cols=53 Identities=23% Similarity=0.213 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhhccccccccCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030983 73 SRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEI 128 (168)
Q Consensus 73 ~~lVD~feK~y~s~kvp~~~d~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL 128 (168)
...|+++.+.+..+-.+.+.| ..+..+-..+..++......+..+|..+++..
T Consensus 20 ~~~~~~l~~l~~~~l~~~~~d---~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~ 72 (103)
T PF00804_consen 20 KEKLNELRKLHKKILSSPDQD---SELKRELDELTDEIKQLFQKIKKRLKQLSKDN 72 (103)
T ss_dssp HHHHHHHHHHHHHHHTSSSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888777665333322 33444444444444445555555555555443
No 79
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=22.83 E-value=2.1e+02 Score=20.61 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhhccc-cccccCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHhCC
Q 030983 73 SRLVDMYKQAYESIE-VPKYVDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHP 151 (168)
Q Consensus 73 ~~lVD~feK~y~s~k-vp~~~d~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~P 151 (168)
.++.|.|.+.|..|- .|- +.+ +.. .|--.+..- ..-+++.-+--+++ ||..-|.+.| |
T Consensus 20 sEVL~~~k~N~D~~~aL~~-ETK-----------aEr---~~R~~I~LA-~k~Ek~r~~~tsir-p~rkat~~~f----~ 78 (97)
T PF11043_consen 20 SEVLDNIKNNYDAFMALPP-ETK-----------AER---MYRRDIQLA-EKQEKERINQTSIR-PFRKATYTKF----P 78 (97)
T ss_pred HHHHHHHHHHHHHHHcCCh-hhH-----------HHH---HHHHHHHHH-HHHHHHHHHHhhcc-hHHHhhhhcc----c
Confidence 688999999999885 332 111 110 111111100 01233344456889 9999998764 5
Q ss_pred cchHHH
Q 030983 152 ELKKKF 157 (168)
Q Consensus 152 e~~~~v 157 (168)
||.+..
T Consensus 79 eidprl 84 (97)
T PF11043_consen 79 EIDPRL 84 (97)
T ss_pred ccChHH
Confidence 555443
No 80
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=22.75 E-value=2.6e+02 Score=24.50 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=43.2
Q ss_pred CccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC------CHHHhHHhCCc
Q 030983 93 DKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTM------TAEEYFEKHPE 152 (168)
Q Consensus 93 d~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~m------T~dd~~~a~Pe 152 (168)
.+|-..|+++ ..+.++-.-..+.++||++-++.|+.|+..+ |++.- +.+..+..|++
T Consensus 143 ~dY~eni~s~--~tIakavgKekE~ekrLa~Hkk~ia~~k~~l-~k~~~~~~~Gvsr~~~f~l~~~ 205 (310)
T COG4594 143 EDYQENIDSF--KTIAKAVGKEKEMEKRLAKHKKKIAEIKKKL-PKGTNSLAIGVSRATQFNLHTE 205 (310)
T ss_pred ccHHHHHHHH--HHHHHHhCchHHHHHHHHHHHHHHHHHHHhC-cCCcceeeEEecchhheecccc
Confidence 4566777776 4455566667888999999999999999999 99886 55666666654
No 81
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=22.23 E-value=4.2e+02 Score=21.77 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=9.7
Q ss_pred hccccccCCHHHhHHhCCc
Q 030983 134 LKEKISTMTAEEYFEKHPE 152 (168)
Q Consensus 134 ~~~P~e~mT~dd~~~a~Pe 152 (168)
+++-..++|-+|.-..+-+
T Consensus 142 ~k~g~~~vtpedk~~v~~~ 160 (201)
T KOG4603|consen 142 IKAGTNHVTPEDKEQVYRE 160 (201)
T ss_pred HHHhcccCCHHHHHHHHHH
Confidence 3333366666665544433
No 82
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=22.10 E-value=1.9e+02 Score=23.41 Aligned_cols=28 Identities=36% Similarity=0.412 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030983 105 ALLVELKEAEGKSLKESERLEKEIAEVR 132 (168)
Q Consensus 105 ~~~~~a~~~~~~s~~rI~~l~~eL~~i~ 132 (168)
+++.++++...+...+|.+|+++|...+
T Consensus 146 ~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 146 ELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555555443
No 83
>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins. Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.
Probab=22.00 E-value=2.4e+02 Score=18.45 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=36.8
Q ss_pred CHHHHhcccC--hHHHHHHHHHhhccccccccCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030983 63 DWEYYRKGIG--SRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELK 135 (168)
Q Consensus 63 Dwa~Yk~~l~--~~lVD~feK~y~s~kvp~~~d~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~ 135 (168)
||+..-..+. ..+|+.+.. ................-..+...=.+.....+.+..++..+|..+..-+
T Consensus 9 dWe~l~~l~~~R~~ll~~l~~-----~~~~~~~~~~~~~~~~l~~Il~~d~~i~~ll~~~~~~l~~~l~~~~~~~ 78 (84)
T PF05400_consen 9 DWEELEELLDERQELLERLFE-----EQAALSPPEQEELRELLRRILELDQEIRALLQARRDELKQELRQLRKGR 78 (84)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH-----CHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhh-----ccccCChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6766666665 566666665 1111222233344444444555555666666677777777777666544
No 84
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=21.77 E-value=61 Score=20.82 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=12.3
Q ss_pred ccCCHHHhHHhCCcch-HHHHH
Q 030983 139 STMTAEEYFEKHPELK-KKFDD 159 (168)
Q Consensus 139 e~mT~dd~~~a~Pe~~-~~v~~ 159 (168)
..+|.||+.+.||.|. ++|++
T Consensus 30 ~G~s~eeI~~~yp~Lt~~~i~a 51 (56)
T PF04255_consen 30 AGESPEEIAEDYPSLTLEDIRA 51 (56)
T ss_dssp TT--HHHHHHHSTT--HHHHHH
T ss_pred cCCCHHHHHHHCCCCCHHHHHH
Confidence 4578999999999864 34443
No 85
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=21.56 E-value=2e+02 Score=26.94 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 030983 112 EAEGKSLKESERLEKEIAEVREL 134 (168)
Q Consensus 112 ~~~~~s~~rI~~l~~eL~~i~~~ 134 (168)
...+..+.+|++|+.+++.|+..
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666666554
No 86
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=20.88 E-value=3.7e+02 Score=22.45 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=26.0
Q ss_pred HHHHHHHhhccc--cccccCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030983 76 VDMYKQAYESIE--VPKYVDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVR 132 (168)
Q Consensus 76 VD~feK~y~s~k--vp~~~d~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~ 132 (168)
-|.+.+.|.+++ ||--.-....-..---+-+...+.+|+...+..+..-++++..++
T Consensus 74 RdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~ 132 (229)
T KOG1319|consen 74 RDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLR 132 (229)
T ss_pred HHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777 443111000000111123445556666666655555444444443
No 87
>PRK06771 hypothetical protein; Provisional
Probab=20.85 E-value=3.4e+02 Score=19.80 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcchHHHHHHhhhCC
Q 030983 110 LKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDY 165 (168)
Q Consensus 110 a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~~I~~g~ 165 (168)
..+..+..+.+++.++..|+.|-+-- .+.|.. |.+..++.+.|+.|+
T Consensus 21 l~~~~~~~~~~~k~ie~~L~~I~~~~------Gi~~~~---~~~~~e~~~Li~~Gk 67 (93)
T PRK06771 21 LTKIEKKTDARLKRMEDRLQLITKEM------GIVDRE---PPVNKELRQLMEEGQ 67 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc------CCCCCc---ccccHHHHHHHHcCC
Confidence 34556677789999999999988776 333322 678888888888886
No 88
>PF01267 F-actin_cap_A: F-actin capping protein alpha subunit; InterPro: IPR002189 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta (see IPR001698 from INTERPRO). Neither of the subunits shows sequence similarity to other filament-capping proteins []. The alpha subunit is a protein of about 268 to 286 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0008290 F-actin capping protein complex; PDB: 1MQ1_D 1MWN_X 2KBM_Y 2KZ7_A 3AAE_C 3AA6_A 3LK4_G 1IZN_A 3AA7_A 3AAA_A ....
Probab=20.64 E-value=1.3e+02 Score=25.81 Aligned_cols=35 Identities=9% Similarity=0.156 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhhcCCCCCcCCHHH
Q 030983 32 EARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEY 66 (168)
Q Consensus 32 ~~~~~l~afK~r~~~~~~~l~~~~pe~pp~IDwa~ 66 (168)
=|.+-...|..-++..-..|.|.||=+-.+|||.-
T Consensus 228 ~q~~L~e~~~~ls~~tFK~LRR~LPVTRsKi~W~k 262 (271)
T PF01267_consen 228 YQTSLNESYNNLSEKTFKALRRQLPVTRSKINWNK 262 (271)
T ss_dssp HHHHHHHHHHHHHHTHHHHHS-SS-TTTSS-SHHH
T ss_pred HHHHHHHHHHHhhHHHHHHhhhhCCCCCCcccccc
Confidence 34555566776667777788878999999999985
No 89
>PRK09737 EcoKI restriction-modification system protein HsdS; Provisional
Probab=20.62 E-value=2.6e+02 Score=24.38 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=13.6
Q ss_pred HhhccccccccCccchhhhhHHHHH
Q 030983 82 AYESIEVPKYVDKVTPEYKSKFDAL 106 (168)
Q Consensus 82 ~y~s~kvp~~~d~~~~~i~a~e~~~ 106 (168)
.+.++.||.|.-..-..|..+..++
T Consensus 361 ~l~~l~IplPpl~EQ~kI~~~l~~l 385 (461)
T PRK09737 361 ALANYPIRVPPLEEQAEIVRRVEQL 385 (461)
T ss_pred HHhcCcCCCCCHHHHHHHHHHHHHH
Confidence 3667777887644444444444343
No 90
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=20.41 E-value=4.9e+02 Score=22.20 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhhcCCCCCcCCHHHHhcccChHHHHHHHHHhhccccccc-cCccchhhhhHHHHHHHH
Q 030983 31 DEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKY-VDKVTPEYKSKFDALLVE 109 (168)
Q Consensus 31 ~~~~~~l~afK~r~~~~~~~l~~~~pe~pp~IDwa~Yk~~l~~~lVD~feK~y~s~kvp~~-~d~~~~~i~a~e~~~~~~ 109 (168)
+..+..+.+|+.+|......+.. |.+ .|.+-+.+.+....+.+ .+.+.... ........-
T Consensus 176 ~ga~eki~~Lr~~y~~l~~~i~~-------------lE~-----~VaeQ~~qL~~~n~~~~~~~~~~~~~-~~~~~~~~~ 236 (259)
T PF08657_consen 176 PGAREKIAALRQRYNQLSNSIAY-------------LEA-----EVAEQEAQLERMNRSSSDSSSDDEES-EESSEDSVD 236 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------------HHH-----HHHHHHHHHHHHhcCccccccccccc-ccccccchh
Confidence 48888899999888888887664 333 55555666666643222 11110000 111122223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030983 110 LKEAEGKSLKESERLEKEIAEV 131 (168)
Q Consensus 110 a~~~~~~s~~rI~~l~~eL~~i 131 (168)
..+.++.=..+|.+|+.++..+
T Consensus 237 ~de~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 237 TDEDIRREEEEIRELERKKREL 258 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555566677777777654
No 91
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=20.38 E-value=1.7e+02 Score=16.33 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 030983 118 LKESERLEKEIAEVREL 134 (168)
Q Consensus 118 ~~rI~~l~~eL~~i~~~ 134 (168)
++.++.++++|+.++..
T Consensus 4 qakla~YqaeLa~vqk~ 20 (25)
T PF06696_consen 4 QAKLAQYQAELARVQKA 20 (25)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45567788888877654
No 92
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.38 E-value=2.1e+02 Score=23.65 Aligned_cols=53 Identities=25% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcchHHHHHHhhh
Q 030983 108 VELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRN 163 (168)
Q Consensus 108 ~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~~I~~ 163 (168)
++.-+-.-..+.||+.++++.+++.++. -=.. |++|+.+..=+|. +|+.+|..
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll-~ka~-~~~d~l~ie~~L~-~v~~eIe~ 180 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELL-EKAK-TVEDLLEIERELS-RVRSEIEQ 180 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC-CHHHHHHHHHHHH-HHHHHHHH
No 93
>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]
Probab=20.26 E-value=4.4e+02 Score=20.81 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=60.9
Q ss_pred HHHHHHhhhcCCCCCcCCHHHHhcccC---hHHH--HHHHHHhhccccccccCccchh---hhhHHHHHHHHHHHHHHHH
Q 030983 46 EVNSTLQTKFSQEPEPIDWEYYRKGIG---SRLV--DMYKQAYESIEVPKYVDKVTPE---YKSKFDALLVELKEAEGKS 117 (168)
Q Consensus 46 ~~~~~l~~~~pe~pp~IDwa~Yk~~l~---~~lV--D~feK~y~s~kvp~~~d~~~~~---i~a~e~~~~~~a~~~~~~s 117 (168)
++-..+.. |+..++ ++.-.+|. .+++ +++..+++.++||-.+=.|+.. =+-..++. +
T Consensus 30 ~Lgl~vs~-F~~tsq----~~L~qrl~tLv~~L~~l~~~s~k~n~i~IPleVl~yIddGrNPd~ytke~----------l 94 (147)
T KOG3046|consen 30 QLGLIVSN-FQPTSQ----DALNQRLNTLVRGLQDLDKLSSKLNDIQIPLEVLEYIDDGRNPDLYTKEF----------L 94 (147)
T ss_pred HHhHhhhc-CCCCcH----HHHHHHHHHHHHHhhhhHHHHHhhccccCcHHHHHHHhcCCCccHHHHHH----------H
Confidence 44444443 566665 55555554 3444 7888889889998754332211 11122222 2
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcchHHHHHHhhh
Q 030983 118 LKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRN 163 (168)
Q Consensus 118 ~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~~I~~ 163 (168)
++-++.-+.+-.+|..++ -|..-=++++.++|||+...+++-+..
T Consensus 95 e~~~~kNq~vkGK~~~~K-~fr~~l~eEl~q~fPe~~~~yr~Ir~e 139 (147)
T KOG3046|consen 95 EKCLAKNQYVKGKIDAFK-KFRKHLAEELSQEFPELVDPYRSIRAE 139 (147)
T ss_pred HHHHHhhhHHhhhHHHHH-HHHHHHHHHHHHHChHHHHHHHHHHhc
Confidence 223445555556666666 666777899999999999888765543
No 94
>smart00595 MADF subfamily of SANT domain.
Probab=20.08 E-value=2.9e+02 Score=18.56 Aligned_cols=49 Identities=27% Similarity=0.591 Sum_probs=30.9
Q ss_pred cHHHHHhhc-C-CHHHHHHHHHHHhhHHHHHHHHhhhcCCCC-CcCCHHHHhc
Q 030983 20 DWEGMAKML-V-SDEARKEFATLRRAFDEVNSTLQTKFSQEP-EPIDWEYYRK 69 (168)
Q Consensus 20 dWa~~~~~l-v-p~~~~~~l~afK~r~~~~~~~l~~~~pe~p-p~IDwa~Yk~ 69 (168)
-|..|+..| . ..+-+.....||..+-....++... .... +...|-||..
T Consensus 29 aW~~Ia~~l~~~~~~~~~kw~~LR~~y~~e~~r~~~~-~~~~~~~~~w~~~~~ 80 (89)
T smart00595 29 AWEEIAEELGLSVEECKKRWKNLRDRYRRELKRLQNG-KSGGGKKSKWEYFDR 80 (89)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCCchhhHh
Confidence 799999997 3 4566777777776665555554322 1111 3568888854
Done!