Query 030983
Match_columns 168
No_of_seqs 115 out of 231
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 11:40:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cly_B ATP synthase D chain, m 100.0 3.5E-53 1.2E-57 333.9 11.7 148 14-167 5-153 (160)
2 3oa7_A Head morphogenesis prot 60.8 22 0.00077 28.3 6.4 46 113-160 52-97 (206)
3 2cly_B ATP synthase D chain, m 60.4 53 0.0018 24.9 8.7 80 59-138 7-121 (160)
4 1t3j_A Mitofusin 1; coiled coi 60.1 19 0.00065 25.4 5.3 39 97-135 32-70 (96)
5 4dnd_A Syntaxin-10, SYN10; str 43.4 84 0.0029 22.9 6.8 59 102-162 64-122 (130)
6 1eq1_A Apolp-III, apolipophori 39.4 1.2E+02 0.0042 22.9 8.0 75 74-156 18-100 (166)
7 2lj9_A CP12 domain-containing 37.3 9.1 0.00031 27.3 0.6 56 99-155 28-93 (99)
8 4dzn_A Coiled-coil peptide CC- 36.4 45 0.0015 18.6 3.2 14 118-131 8-21 (33)
9 1zme_C Proline utilization tra 33.8 56 0.0019 20.2 4.0 23 113-135 45-67 (70)
10 2k53_A A3DK08 protein; NESG, C 33.0 25 0.00084 23.3 2.2 22 138-159 4-25 (76)
11 2k5e_A Uncharacterized protein 27.8 31 0.0011 22.6 2.0 22 138-159 6-27 (73)
12 1nlw_A MAD protein, MAX dimeri 27.1 1.4E+02 0.0047 19.8 6.4 29 105-133 40-68 (80)
13 2l5g_A GPS2 protein, G protein 26.5 91 0.0031 18.3 3.6 23 113-135 9-31 (38)
14 3e1k_B Lactose regulatory prot 25.8 27 0.00091 18.1 1.0 13 137-149 4-16 (22)
15 1t7s_A BAG-1 cochaperone; stru 25.8 1.1E+02 0.0039 22.8 4.9 63 73-135 68-135 (137)
16 2zqm_A Prefoldin beta subunit 25.6 1.6E+02 0.0055 20.0 9.0 56 76-133 43-98 (117)
17 3bts_E Regulatory protein GAL4 25.3 25 0.00086 18.9 0.9 12 138-149 3-14 (26)
18 3mfn_A Uncharacterized protein 24.4 1.7E+02 0.0057 22.2 5.6 53 47-101 80-136 (157)
19 2avr_X Adhesion A; antiparalle 24.1 1.2E+02 0.004 22.1 4.7 21 142-162 72-92 (119)
20 1ufm_A COP9 complex subunit 4; 23.5 54 0.0018 22.0 2.6 36 131-166 21-60 (84)
21 1hlo_A Protein (transcription 23.4 1.4E+02 0.0046 19.5 4.6 30 104-133 49-78 (80)
22 2pnv_A Small conductance calci 23.3 1.3E+02 0.0043 18.0 5.0 30 106-135 10-39 (43)
23 3etw_A Adhesin A; antiparallel 22.8 1.5E+02 0.0051 21.5 5.0 41 99-140 69-109 (119)
24 2fi0_A Conserved domain protei 22.6 42 0.0014 22.2 1.8 20 138-157 10-29 (81)
25 3htk_C E3 SUMO-protein ligase 22.4 81 0.0028 26.0 3.9 48 33-81 76-128 (267)
26 3nmd_A CGMP dependent protein 21.9 1.3E+02 0.0045 20.0 4.2 20 114-133 42-61 (72)
27 2avr_X Adhesion A; antiparalle 21.6 2.2E+02 0.0074 20.7 5.7 36 99-134 69-104 (119)
28 2w9y_A CE-FAR-7, fatty acid/re 21.5 1.8E+02 0.0061 21.7 5.3 13 29-41 16-28 (140)
29 1p3q_Q VPS9P, vacuolar protein 21.5 41 0.0014 21.2 1.5 20 142-161 15-34 (54)
30 3swf_A CGMP-gated cation chann 21.4 1.9E+02 0.0065 19.3 5.7 37 97-133 17-53 (74)
31 1am9_A Srebp-1A, protein (ster 21.0 1.8E+02 0.0063 19.0 5.1 31 105-135 43-73 (82)
32 3nr7_A DNA-binding protein H-N 20.9 2E+02 0.0069 19.5 6.6 42 107-149 40-81 (86)
33 2v71_A Nuclear distribution pr 20.9 2.5E+02 0.0084 21.9 6.3 22 65-86 13-36 (189)
34 1yf2_A Type I restriction-modi 20.8 1.1E+02 0.0039 24.6 4.5 10 83-92 158-167 (425)
No 1
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=100.00 E-value=3.5e-53 Score=333.95 Aligned_cols=148 Identities=26% Similarity=0.478 Sum_probs=115.8
Q ss_pred hhhhhccHHHHHhhcCCHHHHHHHHHHHhhHHHHHHHHhhhcCCCCCcCCHHHHhcccC-hHHHHHHHHHhhcccccccc
Q 030983 14 KAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIG-SRLVDMYKQAYESIEVPKYV 92 (168)
Q Consensus 14 ~a~~~idWa~~~~~lvp~~~~~~l~afK~r~~~~~~~l~~~~pe~pp~IDwa~Yk~~l~-~~lVD~feK~y~s~kvp~~~ 92 (168)
+|+++|||++|+++ ||++|+++|++||++|++++++|.. ||++||+|||+|||++|+ ++|||+|||+|++|+||||+
T Consensus 5 ~a~~~idW~~l~~~-v~~~~~a~~~afK~~~d~~~~~v~~-lpe~pp~IDwa~Yk~~l~~~~lVD~fek~y~s~kvp~~~ 82 (160)
T 2cly_B 5 LALKTIDWVAFGEI-IPRNQKAVANSLKSWNETLTSRLAT-LPEKPPAIDWAYYKANVAKAGLVDDFEKKFNALKVPIPE 82 (160)
T ss_dssp CCCCCCCHHHHHTT-SCGGGHHHHHHHHHHHHHHHHHHHH-SCSSCCCCCHHHHHHTCSSTTHHHHHHHHHTTCCCCCCC
T ss_pred HHHhhccHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHh-cccCCCCCCHHHHHHhCCchHHHHHHHHHHhccCCCCCc
Confidence 45789999999999 9999999999999999999999998 799999999999999999 99999999999999999999
Q ss_pred CccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcchHHHHHHhhhCCCC
Q 030983 93 DKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWG 167 (168)
Q Consensus 93 d~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~~I~~g~Wg 167 (168)
|++++.|++++++++++|++++++|++||++|+++|++|+++| ||+|||||||+++||+++ +| .|+++.||
T Consensus 83 d~~~~~i~a~e~~~~~~a~~~~~~s~~ri~~lekeL~~i~~~~-P~~~mT~dd~~~a~Pe~~--~D-~i~~p~Wp 153 (160)
T 2cly_B 83 DKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMRNII-PFDQMTIEDLNEVFPETK--LD-KKKYPYWP 153 (160)
T ss_dssp CCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTC----------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHhCCHHHHHHhCchhc--cC-cccCCCCC
Confidence 9999999999999999999999999999999999999999999 999999999999999999 44 89999994
No 2
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=60.75 E-value=22 Score=28.31 Aligned_cols=46 Identities=11% Similarity=0.181 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcchHHHHHH
Q 030983 113 AEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDE 160 (168)
Q Consensus 113 ~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~~ 160 (168)
..+.+.+++.+|..-|++++... -+-+|.+.+..-||++.++..+-
T Consensus 52 s~~~l~ae~~~L~~~l~kLeGn~--se~ITfe~~~ks~p~i~ke~Y~~ 97 (206)
T 3oa7_A 52 SHNTLSKELDNLRSRFGNLEGNT--SERITIKNILQSRPDISAEECNF 97 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCG--GGCCCHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHccCCH--HhccCHHHHhhcCcccCHHHHhh
Confidence 34457788889999999999875 78899999999999999887653
No 3
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=60.45 E-value=53 Score=24.87 Aligned_cols=80 Identities=19% Similarity=0.156 Sum_probs=51.0
Q ss_pred CCcCCHHHHhcccC---hHHHHHHHHHhhccc--------cccccC--------ccchhhhhHHHH--------------
Q 030983 59 PEPIDWEYYRKGIG---SRLVDMYKQAYESIE--------VPKYVD--------KVTPEYKSKFDA-------------- 105 (168)
Q Consensus 59 pp~IDwa~Yk~~l~---~~lVD~feK~y~s~k--------vp~~~d--------~~~~~i~a~e~~-------------- 105 (168)
...|||+..-+.|+ ...+..|.+.++.+. -|-+.| .-...||.++++
T Consensus 7 ~~~idW~~l~~~v~~~~~a~~~afK~~~d~~~~~v~~lpe~pp~IDwa~Yk~~l~~~~lVD~fek~y~s~kvp~~~d~~~ 86 (160)
T 2cly_B 7 LKTIDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKAGLVDDFEKKFNALKVPIPEDKYT 86 (160)
T ss_dssp CCCCCHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHSCSSCCCCCHHHHHHTCSSTTHHHHHHHHHTTCCCCCCCCCCT
T ss_pred HhhccHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHhCCchHHHHHHHHHHhccCCCCCcchhH
Confidence 35699999999888 466677777766553 122222 223456666654
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030983 106 --LLVELKEAEGKSLKESERLEKEIAEVRELKEKI 138 (168)
Q Consensus 106 --~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~ 138 (168)
+...-++.+++..+-+++.+++|+.++..+.-+
T Consensus 87 ~~i~a~e~~~~~~a~~~~~~s~~ri~~lekeL~~i 121 (160)
T 2cly_B 87 AQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKM 121 (160)
T ss_dssp THHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666777777778888777766333
No 4
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=60.13 E-value=19 Score=25.43 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=31.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030983 97 PEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELK 135 (168)
Q Consensus 97 ~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~ 135 (168)
.+++.-+..+-..+..+..+.+.+|++|++++..|+.+.
T Consensus 32 qELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iq 70 (96)
T 1t3j_A 32 QEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQ 70 (96)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888888999999999999999999999988765
No 5
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=43.41 E-value=84 Score=22.89 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcchHHHHHHhh
Q 030983 102 KFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIR 162 (168)
Q Consensus 102 ~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~~I~ 162 (168)
+...+..+....+..++..|.+|++.+.-++..+.-| .++-.|+.. +=..-..+...|+
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF-~l~~~Ei~~-Rr~fV~~~r~~I~ 122 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKF-KLPAGDLQE-RKVFVERMREAVQ 122 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-CCCHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhc-CCCHHHHHH-HHHHHHHHHHHHH
Confidence 3345566677777888888889999999888888778 588777643 3344444444443
No 6
>1eq1_A Apolp-III, apolipophorin-III; five helix-bundle, "helix-short helix-helix" recognition motif, lipid binding protein; NMR {Manduca sexta} SCOP: a.63.1.1
Probab=39.45 E-value=1.2e+02 Score=22.87 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhccccccccCccchhhhhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhccccccCCHHH
Q 030983 74 RLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKES--------ERLEKEIAEVRELKEKISTMTAEE 145 (168)
Q Consensus 74 ~lVD~feK~y~s~kvp~~~d~~~~~i~a~e~~~~~~a~~~~~~s~~rI--------~~l~~eL~~i~~~~~P~e~mT~dd 145 (168)
++-..|..+|++|.--...-...+.+-.=..-.......+....+.-| ..|+..-.||+. |-++
T Consensus 18 EfqKTfSeQfNsl~nSKntQ~~nKA~KdGsDsvLqqls~~s~slq~al~dangkakeALEq~R~nlek--------tAee 89 (166)
T 1eq1_A 18 EFQKTFSEQFNSLVNSKNTQDFNKALKDGSDSVLQQLSAFSSSLQGAISDANGKAKEALEQARQNVEK--------TAEE 89 (166)
T ss_dssp HHHHHHHHHHHHHTSSCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSTHHHHHHHHHHHHHH--------HHHG
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH--------HHHH
Confidence 344456666777754433333333332222233333333333333333 344555555543 7789
Q ss_pred hHHhCCcchHH
Q 030983 146 YFEKHPELKKK 156 (168)
Q Consensus 146 ~~~a~Pe~~~~ 156 (168)
+..+|||+.+.
T Consensus 90 LRkaHPdVE~q 100 (166)
T 1eq1_A 90 LRKAHPDVEKE 100 (166)
T ss_dssp GGGCSHHHHHT
T ss_pred HHHhCchHHHH
Confidence 99999987653
No 7
>2lj9_A CP12 domain-containing protein 2; helix, protein binding, intrinsically disordered protein; NMR {Arabidopsis thaliana}
Probab=37.30 E-value=9.1 Score=27.27 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHHHHHHHH---H------HHHHHHHHHHHHHHHHhcccc-ccCCHHHhHHhCCcchH
Q 030983 99 YKSKFDALLVELKEAEGK---S------LKESERLEKEIAEVRELKEKI-STMTAEEYFEKHPELKK 155 (168)
Q Consensus 99 i~a~e~~~~~~a~~~~~~---s------~~rI~~l~~eL~~i~~~~~P~-e~mT~dd~~~a~Pe~~~ 155 (168)
|+..-.+++++|.+..+. | =.++.+|+++...-+.-. |- +...+|.||+.+|+..+
T Consensus 28 L~e~Ie~ai~eAr~~Ca~g~~S~eCa~AWd~VEELqAeashqr~~~-~~~~~t~lE~yCdeNPea~E 93 (99)
T 2lj9_A 28 ISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKK-KADGSDPLEEYCKDNPETNE 93 (99)
T ss_dssp ---------------------------------------------------CCHHHHHHHHCTTTTS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhChhcc-ccCCCChHHHHHHHCCCchH
Confidence 444444555555555442 2 235788888888887766 52 25569999999999754
No 8
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=36.39 E-value=45 Score=18.57 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 030983 118 LKESERLEKEIAEV 131 (168)
Q Consensus 118 ~~rI~~l~~eL~~i 131 (168)
+.+|+.|+++++.+
T Consensus 8 kqeiaalkkeiaal 21 (33)
T 4dzn_A 8 KQEIAALKKEIAAL 21 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 9
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=33.79 E-value=56 Score=20.18 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 030983 113 AEGKSLKESERLEKEIAEVRELK 135 (168)
Q Consensus 113 ~~~~s~~rI~~l~~eL~~i~~~~ 135 (168)
++.....+|..|+..|..+++..
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888888754
No 10
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=33.02 E-value=25 Score=23.29 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=18.7
Q ss_pred cccCCHHHhHHhCCcchHHHHH
Q 030983 138 ISTMTAEEYFEKHPELKKKFDD 159 (168)
Q Consensus 138 ~e~mT~dd~~~a~Pe~~~~v~~ 159 (168)
..+||+.|+...+|+..+-+..
T Consensus 4 t~d~tI~eIv~~~P~~~~vf~~ 25 (76)
T 2k53_A 4 TKDMIIADVLQMDRGTAPIFIN 25 (76)
T ss_dssp CTTSBHHHHHHHCGGGHHHHHH
T ss_pred CCCCCHHHHHHHCHHHHHHHHH
Confidence 4589999999999999887753
No 11
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=27.79 E-value=31 Score=22.56 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=18.5
Q ss_pred cccCCHHHhHHhCCcchHHHHH
Q 030983 138 ISTMTAEEYFEKHPELKKKFDD 159 (168)
Q Consensus 138 ~e~mT~dd~~~a~Pe~~~~v~~ 159 (168)
..+||+.|+...+|+..+-+..
T Consensus 6 ~~d~tI~eiv~~~P~~~~vf~~ 27 (73)
T 2k5e_A 6 TKDMTFAQALQTHPGVAGVLRS 27 (73)
T ss_dssp CSSSBHHHHHHHCTHHHHHHHH
T ss_pred CCCCCHHHHHHHCHHHHHHHHH
Confidence 3589999999999999887643
No 12
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=27.10 E-value=1.4e+02 Score=19.76 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030983 105 ALLVELKEAEGKSLKESERLEKEIAEVRE 133 (168)
Q Consensus 105 ~~~~~a~~~~~~s~~rI~~l~~eL~~i~~ 133 (168)
.+...|.+|+.....+...+..+.+.++.
T Consensus 40 ~iL~kA~~yI~~L~~~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 40 SLLTKAKLHIKKLEDSDRKAVHQIDQLQR 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777666654
No 13
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.50 E-value=91 Score=18.25 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 030983 113 AEGKSLKESERLEKEIAEVRELK 135 (168)
Q Consensus 113 ~~~~s~~rI~~l~~eL~~i~~~~ 135 (168)
+..+.+..|..++..|..+++.+
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777666543
No 14
>3e1k_B Lactose regulatory protein LAC9; transctiption, repressor, trans-activation, carbohydrate metabolism, DNA-binding, galactose metabolism; 3.00A {Kluyveromyces lactis}
Probab=25.82 E-value=27 Score=18.05 Aligned_cols=13 Identities=15% Similarity=0.302 Sum_probs=9.9
Q ss_pred ccccCCHHHhHHh
Q 030983 137 KISTMTAEEYFEK 149 (168)
Q Consensus 137 P~e~mT~dd~~~a 149 (168)
-|.+.||||+...
T Consensus 4 mfntttmddvyny 16 (22)
T 3e1k_B 4 LFNTTTMDDVYNY 16 (26)
T ss_pred ccccccHHHHHHH
Confidence 3778899998653
No 15
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=25.80 E-value=1.1e+02 Score=22.77 Aligned_cols=63 Identities=8% Similarity=0.057 Sum_probs=41.6
Q ss_pred hHHHHHHHHHhhccc-cccccC----ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030983 73 SRLVDMYKQAYESIE-VPKYVD----KVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELK 135 (168)
Q Consensus 73 ~~lVD~feK~y~s~k-vp~~~d----~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~ 135 (168)
.++.+.|.|..+.+. +..|.+ .|....-..-+-++..+..+....++-++.+...+..|.+-+
T Consensus 68 k~~~E~~MK~LE~LDsl~i~~~~t~~~q~~~~R~KRK~lV~~IQ~~L~~~D~l~~~i~~~~~~~~~~~ 135 (137)
T 1t7s_A 68 KYFNEEAERHLETLDGMNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRRLQEYQSVLNGDI 135 (137)
T ss_dssp HHHHHHHHHHHHHHHTEEECCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHhhcccCCcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 355677777776665 444444 345666677778888888898888888888888888888766
No 16
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=25.58 E-value=1.6e+02 Score=19.96 Aligned_cols=56 Identities=21% Similarity=0.174 Sum_probs=25.3
Q ss_pred HHHHHHHhhccccccccCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030983 76 VDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRE 133 (168)
Q Consensus 76 VD~feK~y~s~kvp~~~d~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~ 133 (168)
.++++..=+.-+|+++++..+-. .-..++....++-.+.++.+|..|++.+..++.
T Consensus 43 ~~eL~~l~~d~~vy~~iG~vfv~--~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~ 98 (117)
T 2zqm_A 43 LDEIESLPDDAVVYKTVGTLIVK--TTKDKAVAELKEKIETLEVRLNALERQEKKLNE 98 (117)
T ss_dssp HHHHHTSCTTCCEEEEETTEEEE--ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcHhHHHhhHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555443444566666654322 222334444444444444444444444444443
No 17
>3bts_E Regulatory protein GAL4; eukaryotic transcription complex, NAD, rossmann fold, acetylation, carbohydrate metabolism, DNA-binding; HET: NAD; 2.70A {Saccharomyces cerevisiae}
Probab=25.26 E-value=25 Score=18.86 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=9.5
Q ss_pred cccCCHHHhHHh
Q 030983 138 ISTMTAEEYFEK 149 (168)
Q Consensus 138 ~e~mT~dd~~~a 149 (168)
|.+.||||++..
T Consensus 3 FNTTTMDDvyNy 14 (26)
T 3bts_E 3 FNTTTMDDVYNY 14 (26)
T ss_pred cccccHHHHHHH
Confidence 678899998753
No 18
>3mfn_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 2.02A {Dyadobacter fermentans}
Probab=24.37 E-value=1.7e+02 Score=22.16 Aligned_cols=53 Identities=17% Similarity=0.384 Sum_probs=35.6
Q ss_pred HHHHHhhhcCCCCCcCCHHHHhcccC---hHHHHHHHHHhhccc-cccccCccchhhhh
Q 030983 47 VNSTLQTKFSQEPEPIDWEYYRKGIG---SRLVDMYKQAYESIE-VPKYVDKVTPEYKS 101 (168)
Q Consensus 47 ~~~~l~~~~pe~pp~IDwa~Yk~~l~---~~lVD~feK~y~s~k-vp~~~d~~~~~i~a 101 (168)
+.+.+...=-..--+||| |++.|. +.++..|=..|+-+. .-++.......+-.
T Consensus 80 aLD~~lG~K~~grk~vDw--Y~~~L~k~DKk~L~~F~~AY~~LhlAM~YdG~~~a~v~K 136 (157)
T 3mfn_A 80 ALDHYFGKKTKGRKDVDW--YKSNLAQQDKKILNTFVSVYEQLHLVMAYDGVGDAEVVK 136 (157)
T ss_dssp HHHHHHCCCSSSCCCHHH--HHHHHHTTCHHHHHHHHHHHHHHCCCCCCTCCCBHHHHH
T ss_pred HHHHHhccccCCCCChHH--HHHHHHhcCHHHHHHHHHHHHHHHHHhhccCcchHHHHH
Confidence 344555431222345666 999996 899999999999998 56666666555544
No 19
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=24.10 E-value=1.2e+02 Score=22.11 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=12.2
Q ss_pred CHHHhHHhCCcchHHHHHHhh
Q 030983 142 TAEEYFEKHPELKKKFDDEIR 162 (168)
Q Consensus 142 T~dd~~~a~Pe~~~~v~~~I~ 162 (168)
+...+...|-++..+++..|+
T Consensus 72 eY~~L~KkYk~~~~~Ld~eI~ 92 (119)
T 2avr_X 72 QYQELASKYEDALKKLEAEME 92 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666665554
No 20
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=23.51 E-value=54 Score=21.98 Aligned_cols=36 Identities=14% Similarity=0.003 Sum_probs=27.1
Q ss_pred HHHhccccccCCHHHhHHhCC----cchHHHHHHhhhCCC
Q 030983 131 VRELKEKISTMTAEEYFEKHP----ELKKKFDDEIRNDYW 166 (168)
Q Consensus 131 i~~~~~P~e~mT~dd~~~a~P----e~~~~v~~~I~~g~W 166 (168)
|.....||..+|++.+...+= ++...+-.||.+|+-
T Consensus 21 l~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l 60 (84)
T 1ufm_A 21 LLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRM 60 (84)
T ss_dssp HHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcE
Confidence 333444999999999998873 567778888888763
No 21
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.36 E-value=1.4e+02 Score=19.49 Aligned_cols=30 Identities=10% Similarity=0.178 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030983 104 DALLVELKEAEGKSLKESERLEKEIAEVRE 133 (168)
Q Consensus 104 ~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~ 133 (168)
..+...|.+|+.....++.+|+.+++.++.
T Consensus 49 ~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 49 AQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367788899999999999999999988764
No 22
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=23.27 E-value=1.3e+02 Score=18.00 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030983 106 LLVELKEAEGKSLKESERLEKEIAEVRELK 135 (168)
Q Consensus 106 ~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~ 135 (168)
++.+...--...++||..|+..|+.|....
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555667778888888888776543
No 23
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=22.81 E-value=1.5e+02 Score=21.52 Aligned_cols=41 Identities=22% Similarity=0.369 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 030983 99 YKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKIST 140 (168)
Q Consensus 99 i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~ 140 (168)
...+...+++.-+.+..+.+.+|+..++.+.+.+.+. .+.+
T Consensus 69 yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE~ik-~lr~ 109 (119)
T 3etw_A 69 YKSQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQ-ALRA 109 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHc
Confidence 3446678888899999999999999999999988877 5544
No 24
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=22.55 E-value=42 Score=22.18 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=17.1
Q ss_pred cccCCHHHhHHhCCcchHHH
Q 030983 138 ISTMTAEEYFEKHPELKKKF 157 (168)
Q Consensus 138 ~e~mT~dd~~~a~Pe~~~~v 157 (168)
..+||+-|+...||++.+-+
T Consensus 10 t~d~~I~elv~~~P~~~~vl 29 (81)
T 2fi0_A 10 DVSIPVAEVVDKHPEVLEIL 29 (81)
T ss_dssp ETTSBHHHHHHHCGGGHHHH
T ss_pred CCCCCHHHHHHHCHHHHHHH
Confidence 45889999999999998755
No 25
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.38 E-value=81 Score=26.01 Aligned_cols=48 Identities=21% Similarity=0.517 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhcCCCCCcCC---HHHHhcc-cC-hHHHHHHHH
Q 030983 33 ARKEFATLRRAFDEVNSTLQTKFSQEPEPID---WEYYRKG-IG-SRLVDMYKQ 81 (168)
Q Consensus 33 ~~~~l~afK~r~~~~~~~l~~~~pe~pp~ID---wa~Yk~~-l~-~~lVD~feK 81 (168)
+..+...|-++.++++..|.+. .++-|+|| |+-|++. +. |.|...|.+
T Consensus 76 ~~~~~~~~~~~~~~~K~~yk~~-~d~~~~~~~~twd~y~~~e~~ap~l~~~~~~ 128 (267)
T 3htk_C 76 YESESNSFDEHIKDLKKNFKQS-SDACPQIDLSTWDKYRTGELTAPKLSELYLN 128 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTSCCCCTTHHHHHHHTSSCCCCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hccCCCCCHHHHHHHhcCCcCCchHHHHHHh
Confidence 4455566666667788888764 77777776 8889888 66 999888884
No 26
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=21.92 E-value=1.3e+02 Score=19.97 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030983 114 EGKSLKESERLEKEIAEVRE 133 (168)
Q Consensus 114 ~~~s~~rI~~l~~eL~~i~~ 133 (168)
+.+.+++|.+.+.++.++++
T Consensus 42 I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 27
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=21.64 E-value=2.2e+02 Score=20.68 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030983 99 YKSKFDALLVELKEAEGKSLKESERLEKEIAEVREL 134 (168)
Q Consensus 99 i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~ 134 (168)
.-.+.+++++..+.+...++..|++.++.+.+.+.+
T Consensus 69 yK~eY~~L~KkYk~~~~~Ld~eI~~qe~iI~nFe~I 104 (119)
T 2avr_X 69 YKSQYQELASKYEDALKKLEAEMEQQKAVISDFEKI 104 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344558899999999999999999999999887765
No 28
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=21.53 E-value=1.8e+02 Score=21.69 Aligned_cols=13 Identities=8% Similarity=0.038 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHHH
Q 030983 29 VSDEARKEFATLR 41 (168)
Q Consensus 29 vp~~~~~~l~afK 41 (168)
+|.+.+..+..|=
T Consensus 16 iP~ev~~f~~~Lt 28 (140)
T 2w9y_A 16 FPTEQLEFSSSIT 28 (140)
T ss_dssp CCHHHHHHHHHCC
T ss_pred CcHHHHHHHHcCC
Confidence 7777777766663
No 29
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=21.52 E-value=41 Score=21.21 Aligned_cols=20 Identities=10% Similarity=0.313 Sum_probs=15.5
Q ss_pred CHHHhHHhCCcchHHHHHHh
Q 030983 142 TAEEYFEKHPELKKKFDDEI 161 (168)
Q Consensus 142 T~dd~~~a~Pe~~~~v~~~I 161 (168)
+++.+...||++.++|=..|
T Consensus 15 ~~~~L~~MFP~lD~evI~~V 34 (54)
T 1p3q_Q 15 TLNTLQNMFPDMDPSLIEDV 34 (54)
T ss_dssp HHHHHHHHSTTSCHHHHHHH
T ss_pred HHHHHHHHcccCCHHHHHHH
Confidence 67888889999988775554
No 30
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=21.37 E-value=1.9e+02 Score=19.30 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=30.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030983 97 PEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRE 133 (168)
Q Consensus 97 ~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~ 133 (168)
..++..++.+..+-...-...+.||..|+..+..+..
T Consensus 17 d~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~~ 53 (74)
T 3swf_A 17 DLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLID 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3456677888999999999999999999998887543
No 31
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=21.05 E-value=1.8e+02 Score=19.05 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030983 105 ALLVELKEAEGKSLKESERLEKEIAEVRELK 135 (168)
Q Consensus 105 ~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~ 135 (168)
.+...|-+|+.....++..|+.+...++...
T Consensus 43 ~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 43 AVLRKAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777888888888888877777776544
No 32
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=20.95 E-value=2e+02 Score=19.46 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHh
Q 030983 107 LVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEK 149 (168)
Q Consensus 107 ~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a 149 (168)
+.+-.+-...-.+..++-+..|+.|..++ -=+-++++|+...
T Consensus 40 veERree~~~~~~~~~er~~Kl~~~~e~l-~~~GI~~eeL~~~ 81 (86)
T 3nr7_A 40 VNERREEESAAAAEVEERTRKLQQYREML-IADGIDPNELLNS 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHhh
Confidence 33333333334555666777788888888 7788999998653
No 33
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=20.94 E-value=2.5e+02 Score=21.87 Aligned_cols=22 Identities=5% Similarity=0.083 Sum_probs=10.3
Q ss_pred HHHhcccC--hHHHHHHHHHhhcc
Q 030983 65 EYYRKGIG--SRLVDMYKQAYESI 86 (168)
Q Consensus 65 a~Yk~~l~--~~lVD~feK~y~s~ 86 (168)
+|||+... ..-+++.+..|+-|
T Consensus 13 ~ywk~~~~~~~q~~~~le~El~EF 36 (189)
T 2v71_A 13 AYWKELSMKYKQSFQEARDELVEF 36 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45655443 34444444444433
No 34
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=20.79 E-value=1.1e+02 Score=24.57 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=6.0
Q ss_pred hhcccccccc
Q 030983 83 YESIEVPKYV 92 (168)
Q Consensus 83 y~s~kvp~~~ 92 (168)
++.+.||.|.
T Consensus 158 l~~~~i~lPp 167 (425)
T 1yf2_A 158 VKSFKIPLPP 167 (425)
T ss_dssp HHTCEECCCC
T ss_pred HhcCccCCCC
Confidence 4456667664
Done!