BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030984
         (168 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WSC|N Chain N, Improved Model Of Plant Photosystem I
 pdb|2WSE|N Chain N, Improved Model Of Plant Photosystem I
 pdb|2WSF|N Chain N, Improved Model Of Plant Photosystem I
          Length = 170

 Score =  208 bits (529), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 106/174 (60%), Positives = 127/174 (72%), Gaps = 10/174 (5%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVS---VSTPAVHGHKMPVIRAQQVDVSKESRG 57
           M+AMNS+VLACNYA SG    S+LNAK+ S   V++P +   K+P+I+A Q  V+ ES+ 
Sbjct: 1   MSAMNSTVLACNYARSGC---SDLNAKLTSMPSVASPQLSALKLPLIKAHQAKVT-ESKS 56

Query: 58  TDGRRXXXXXXXXXXXXXXXXXXXXXXXXGVIDEYLERSK---ELNDQKRLATSGANFAR 114
             GRR                        GVI+EYLE+SK   ELND+KRLAT+GANFAR
Sbjct: 57  DQGRRSALVYLAATLFTAAAAASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFAR 116

Query: 115 AYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 168
           AYTV+FG+CKFPENFTGCQDLAKQKKVPF+SDDL+LEC+GKDKYKCGSNVFWKW
Sbjct: 117 AYTVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEGKDKYKCGSNVFWKW 170


>pdb|2O01|N Chain N, The Structure Of A Plant Photosystem I Supercomplex At 3.4
           Angstrom Resolution
 pdb|3LW5|N Chain N, Improved Model Of Plant Photosystem I
          Length = 85

 Score =  159 bits (401), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 73/85 (85%), Positives = 82/85 (96%), Gaps = 3/85 (3%)

Query: 87  GVIDEYLERSK---ELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPF 143
           GVI+EYLE+SK   ELND+KRLAT+GANFARAYTV+FG+CKFPENFTGCQDLAKQKKVPF
Sbjct: 1   GVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPF 60

Query: 144 ISDDLELECKGKDKYKCGSNVFWKW 168
           +SDDL+LEC+GKDKYKCGSNVFWKW
Sbjct: 61  LSDDLDLECEGKDKYKCGSNVFWKW 85


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.130    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,158,206
Number of Sequences: 62578
Number of extensions: 135087
Number of successful extensions: 188
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 4
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)