BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030984
         (168 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P49107|PSAN_ARATH Photosystem I reaction center subunit N, chloroplastic
           OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2
          Length = 171

 Score =  245 bits (626), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 126/175 (72%), Positives = 145/175 (82%), Gaps = 11/175 (6%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESR 56
           MAAMNSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  
Sbjct: 1   MAAMNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVD 58

Query: 57  GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSK---ELNDQKRLATSGANFA 113
           G++GRR+AM  LA TLF+TA  A S+SANAGVIDEYLERSK   ELND+KRLATSGANFA
Sbjct: 59  GSNGRRSAMVFLAATLFSTA--AVSASANAGVIDEYLERSKTNKELNDKKRLATSGANFA 116

Query: 114 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 168
           RA+TVQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LEC+GKDKYKCGSNVFWKW
Sbjct: 117 RAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171


>sp|O65107|PSAN_MAIZE Photosystem I reaction center subunit N, chloroplastic (Fragment)
           OS=Zea mays GN=PSAN PE=3 SV=1
          Length = 112

 Score =  159 bits (402), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 72/91 (79%), Positives = 83/91 (91%), Gaps = 3/91 (3%)

Query: 81  SSSANAGVIDEYLERSK---ELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAK 137
           + SA A + DEYLE+SK   ELND+KRLATSGANFARAYTV+FG+C+FP NFTGCQDLAK
Sbjct: 22  TGSAKATIFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAK 81

Query: 138 QKKVPFISDDLELECKGKDKYKCGSNVFWKW 168
           QKKVPFISDDLE+EC+GK+K+KCGSNVFWKW
Sbjct: 82  QKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112


>sp|P31093|PSAN_HORVU Photosystem I reaction center subunit N, chloroplastic OS=Hordeum
           vulgare GN=PSAN PE=2 SV=1
          Length = 145

 Score =  157 bits (398), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/106 (75%), Positives = 91/106 (85%), Gaps = 3/106 (2%)

Query: 66  ALLAVTLFTTATAAASSSANAGVIDEYLERSK---ELNDQKRLATSGANFARAYTVQFGT 122
           ALL +     ATAA++ SA A V DEYLE+SK   ELND+KR ATSGANFARAYTVQFG+
Sbjct: 40  ALLGLAAVFAATAASAGSARASVFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGS 99

Query: 123 CKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 168
           CKFP NFTGCQDLAKQKKVPFI+DDLE+EC+GK+K+KCGSNVFWKW
Sbjct: 100 CKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145


>sp|Q9SBN5|PSAN_VOLCA Photosystem I reaction center subunit N, chloroplastic OS=Volvox
           carteri GN=PSAN PE=2 SV=1
          Length = 139

 Score = 89.7 bits (221), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 59/78 (75%), Gaps = 3/78 (3%)

Query: 88  VIDEYLERS---KELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFI 144
           V+++ L +S   K LN++KRLATS AN AR+ TV  GTC+FPENF GC++LA  K V +I
Sbjct: 55  VVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYI 114

Query: 145 SDDLELECKGKDKYKCGS 162
           ++DL++EC+GKD   CGS
Sbjct: 115 AEDLKIECEGKDAKSCGS 132


>sp|Q63135|CR1L_RAT Complement component receptor 1-like protein OS=Rattus norvegicus
           GN=Cr1l PE=1 SV=1
          Length = 559

 Score = 32.3 bits (72), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 123 CKFPENFTGCQDLAKQKKVPFISDDLELEC------KGKDKYKCGSNVFW 166
           CK P++ +G Q   + KK  +  D++ LEC      +G  + +C S+  W
Sbjct: 357 CKLPQDMSGFQKGLQMKKDYYYGDNVALECEDGYTLEGSSQSQCQSDASW 406



 Score = 32.3 bits (72), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 123 CKFPENFTGCQDLAKQKKVPFISDDLELEC------KGKDKYKCGSNVFW 166
           CK P++ +G Q   + KK  +  D++ LEC      +G  + +C S+  W
Sbjct: 419 CKLPQDMSGFQKGLQMKKDYYYGDNVALECEDGYTLEGSSQSQCQSDASW 468


>sp|Q7WCL8|ATKA_BORBR Potassium-transporting ATPase A chain OS=Bordetella bronchiseptica
           (strain ATCC BAA-588 / NCTC 13252 / RB50) GN=kdpA PE=3
           SV=1
          Length = 594

 Score = 30.8 bits (68), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%)

Query: 30  SVSTPAVHGHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVI 89
           S S         P +R  +  +  +    +G+ A   + A  LF T T AAS  A  G+ 
Sbjct: 328 SASAAYFEQQPTPALRQAEAALLADGGNLEGKEARFGVAATALFATVTTAASCGAVNGMH 387

Query: 90  DEY 92
           D +
Sbjct: 388 DSF 390


>sp|A2BID7|PRD10_DANRE PR domain zinc finger protein 10 OS=Danio rerio GN=prdm10 PE=3 SV=2
          Length = 1121

 Score = 30.4 bits (67), Expect = 5.2,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 2    AAMNSS-VLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPV 43
            AA+NSS V   +Y IS   G +EL+ K VSV + A  GH  P+
Sbjct: 1049 AAVNSSQVKTTHYVISD--GQTELDGKQVSVPSTATQGHPDPL 1089


>sp|Q7VVZ9|ATKA_BORPE Potassium-transporting ATPase A chain OS=Bordetella pertussis
           (strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=kdpA
           PE=3 SV=1
          Length = 594

 Score = 30.4 bits (67), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 42  PVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEY 92
           P +R  +  +  +    +G+ A   + A  LF T T AAS  A  G+ D +
Sbjct: 340 PALRQAEAALLADGGNLEGKEARFGVAATALFATVTTAASCGAVNGMHDSF 390


>sp|Q7W536|ATKA_BORPA Potassium-transporting ATPase A chain OS=Bordetella parapertussis
           (strain 12822 / ATCC BAA-587 / NCTC 13253) GN=kdpA PE=3
           SV=1
          Length = 594

 Score = 30.0 bits (66), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 42  PVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEY 92
           P +R  +  +  +    +G+ A   + A  LF T T AAS  A  G+ D +
Sbjct: 340 PALRQAEAALLADGGNLEGKEARFGVAATALFATVTTAASCGAVNGMHDSF 390


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.126    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,903,123
Number of Sequences: 539616
Number of extensions: 1928243
Number of successful extensions: 4805
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4785
Number of HSP's gapped (non-prelim): 18
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)